Psyllid ID: psy16201

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MPEQSSLAGINVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEFLNK
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccHHHHHHHHHHHHcccccEEEEEccccccccccHHHHHHccccEEEEccEEEEEEcHHHHHccccccEEEEEccccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHccHHHcHHHHcHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccEEEEcccHHHHHHHHHHHHcccccEEEEEccccHccccccccEEEccccccccccccccEEEccccccccHHHHHHHccEEEEEccccccccc
Coil and Loop (DISEMBL)
mpeqsslaginvftscslvnnfddikhttlSERGALKEASRclkcadapcqkscptqiDIKSFITSISHKNYYGAAkaifsdnplgltcgmvcptsdlcmggcnlyaaeegpiniggLQQFATEVFKdmgisqirppdakvdfpdtkialigcgpaslSCATFLsrmgydditiyEKNTYDmvtnvsprivkgttsrhlygpeqgsflNIELISEKTAYQWVYYSNCKVLSNTRTEFLNK
Flexible Loop (DISEMBL)
MPEQSSLAGINVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCkvlsntrteflnk
Low Complexity Region (SEG)
MPEQSSLAGINVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEFLNK
Disordered region (IsUnstruct)
*******AGINVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNT*******
Disordered Region (DISOPRED)
****************SLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQ**********PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSN*R******
Disordered Region (DISEMBL)
********GINVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEFLNK
Disordered Region (DISPRO)
***********VFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTE****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPEQSSLAGINVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEFLNK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q6NYG8	1022	Dihydropyrimidine dehydro	yes	N/A	0.720	0.169	0.75	8e-75
Q28007	1025	Dihydropyrimidine dehydro	yes	N/A	0.708	0.165	0.754	2e-73
Q12882	1025	Dihydropyrimidine dehydro	yes	N/A	0.708	0.165	0.754	3e-73
Q5R895	1025	Dihydropyrimidine dehydro	yes	N/A	0.708	0.165	0.748	8e-73
Q8CHR6	1025	Dihydropyrimidine dehydro	yes	N/A	0.708	0.165	0.748	1e-72
O89000	1025	Dihydropyrimidine dehydro	yes	N/A	0.708	0.165	0.748	2e-72
Q28943	1025	Dihydropyrimidine dehydro	yes	N/A	0.708	0.165	0.742	1e-70
A8XKG6	1053	Probable dihydropyrimidin	N/A	N/A	0.679	0.154	0.734	1e-67
Q18164	1059	Dihydropyrimidine dehydro	yes	N/A	0.679	0.153	0.716	1e-66
Q55FT1	1009	Dihydropyrimidine dehydro	yes	N/A	0.687	0.163	0.723	1e-66

>sp|Q6NYG8|DPYD_DANRE Dihydropyrimidine dehydrogenase [NADP(+)] OS=Danio rerio GN=dpyd PE=2 SV=1

 Score =  280 bits (715), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 138/184 (75%), Positives = 155/184 (84%), Gaps = 11/184 (5%)

Query: 2   PEQSSLAGINVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIK 61
           PE+S  + +N      L NNFDDIKHTTLSERGAL+EA RCLKCADAPCQKSCPT +DIK
Sbjct: 45  PERSCDSCVN------LENNFDDIKHTTLSERGALREALRCLKCADAPCQKSCPTNLDIK 98

Query: 62  SFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQF 121
           SFITSIS+KNYYGAAKAI SDNPLGLTCGMVCPTSDLC+GGCNLYA+EEGPINIGGLQQF
Sbjct: 99  SFITSISNKNYYGAAKAILSDNPLGLTCGMVCPTSDLCVGGCNLYASEEGPINIGGLQQF 158

Query: 122 ATEVFKDMGISQIRPPDAKV--DFPD---TKIALIGCGPASLSCATFLSRMGYDDITIYE 176
           ATEVF  MGI QIR P+     + P    T+IALIGCGPAS+SCA+FL+R+GYD+ITI+E
Sbjct: 159 ATEVFSKMGIPQIRNPELPTADNMPKSFHTRIALIGCGPASISCASFLARLGYDNITIFE 218

Query: 177 KNTY 180
           K  Y
Sbjct: 219 KQKY 222

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine.
Danio rerio (taxid: 7955)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 2

>sp|Q28007|DPYD_BOVIN Dihydropyrimidine dehydrogenase [NADP(+)] OS=Bos taurus GN=DPYD PE=1 SV=1

 Score =  275 bits (704), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/175 (75%), Positives = 146/175 (83%), Gaps = 5/175 (2%)

Query: 11  NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
           N F    L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSIS+K
Sbjct: 48  NCFNCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSISNK 107

Query: 71  NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
           NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNLYA EEGPINIGGLQQ+ATEVFK M 
Sbjct: 108 NYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQYATEVFKAMN 167

Query: 131 ISQIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           I QIR     PP+   +    KIAL+G GPAS+SCA+FL+R+GY+DITI+EK  Y
Sbjct: 168 IPQIRNPSLPPPEKMPEAYSAKIALLGAGPASISCASFLARLGYNDITIFEKQEY 222

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

>sp|Q12882|DPYD_HUMAN Dihydropyrimidine dehydrogenase [NADP(+)] OS=Homo sapiens GN=DPYD PE=1 SV=2

 Score =  275 bits (702), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 132/175 (75%), Positives = 144/175 (82%), Gaps = 5/175 (2%)

Query: 11  NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
           N F    L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSI++K
Sbjct: 48  NCFNCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANK 107

Query: 71  NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
           NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNLYA EEGPINIGGLQQFATEVFK M 
Sbjct: 108 NYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMS 167

Query: 131 ISQIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           I QIR     PP+   +    KIAL G GPAS+SCA+FL+R+GY DITI+EK  Y
Sbjct: 168 IPQIRNPSLPPPEKMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEY 222

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine. Also involved the degradation of the chemotherapeutic drug 5-fluorouracil.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

>sp|Q5R895|DPYD_PONAB Dihydropyrimidine dehydrogenase [NADP(+)] OS=Pongo abelii GN=DPYD PE=2 SV=1

 Score =  273 bits (698), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 131/175 (74%), Positives = 143/175 (81%), Gaps = 5/175 (2%)

Query: 11  NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
           N F    L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSI++K
Sbjct: 48  NCFNCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANK 107

Query: 71  NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
           NYYGAAK IFSDNPLGLTCGMVCPT DLC+GGCNLYA EEGPINIGGLQQFATEVFK M 
Sbjct: 108 NYYGAAKMIFSDNPLGLTCGMVCPTPDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMS 167

Query: 131 ISQIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           I QIR     PP+   +    KIAL G GPAS+SCA+FL+R+GY DITI+EK  Y
Sbjct: 168 IPQIRNPFLPPPEKMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEY 222

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

>sp|Q8CHR6|DPYD_MOUSE Dihydropyrimidine dehydrogenase [NADP(+)] OS=Mus musculus GN=Dpyd PE=2 SV=1

 Score =  272 bits (696), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/175 (74%), Positives = 146/175 (83%), Gaps = 5/175 (2%)

Query: 11  NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
           N FT   L +NFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSI++K
Sbjct: 48  NCFTCEKLESNFDDIKHTTLGERGALREAVRCLKCADAPCQKSCPTSLDIKSFITSIANK 107

Query: 71  NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
           NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNL+AAEEGPINIGGLQQFATEVFK M 
Sbjct: 108 NYYGAAKLIFSDNPLGLTCGMVCPTSDLCVGGCNLHAAEEGPINIGGLQQFATEVFKAMN 167

Query: 131 ISQIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           I QIR     PP+   +    KIAL G GPAS+SCA+FL+R+GY +ITI+EK  Y
Sbjct: 168 IPQIRNPSLPPPEHMPEAYSAKIALFGAGPASISCASFLARLGYSNITIFEKQEY 222

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

>sp|O89000|DPYD_RAT Dihydropyrimidine dehydrogenase [NADP(+)] OS=Rattus norvegicus GN=Dpyd PE=2 SV=1

 Score =  271 bits (694), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/175 (74%), Positives = 144/175 (82%), Gaps = 5/175 (2%)

Query: 11  NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
           N F    L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSI++K
Sbjct: 48  NCFICEKLENNFDDIKHTTLGERGALREAVRCLKCADAPCQKSCPTSLDIKSFITSIANK 107

Query: 71  NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
           NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNL+A EEGPINIGGLQQFATEVFK M 
Sbjct: 108 NYYGAAKLIFSDNPLGLTCGMVCPTSDLCVGGCNLHATEEGPINIGGLQQFATEVFKAMN 167

Query: 131 ISQIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           I QIR     PP+   +    KIAL G GPAS+SCA+FL+R+GY DITI+EK  Y
Sbjct: 168 IPQIRSPLLPPPEHMPEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEY 222

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

>sp|Q28943|DPYD_PIG Dihydropyrimidine dehydrogenase [NADP(+)] OS=Sus scrofa GN=DPYD PE=1 SV=1

 Score =  266 bits (679), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/175 (74%), Positives = 144/175 (82%), Gaps = 5/175 (2%)

Query: 11  NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
           N F    L NNF DIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSIS+K
Sbjct: 48  NCFHCEKLENNFGDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNK 107

Query: 71  NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
           NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNLYA EEG INIGGLQQFA+EVFK M 
Sbjct: 108 NYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMN 167

Query: 131 ISQIRPP--DAKVDFPD---TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           I QIR P   ++   P+    KIAL+G GPAS+SCA+FL+R+GY DITI+EK  Y
Sbjct: 168 IPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 222

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

>sp|A8XKG6|DPYD_CAEBR Probable dihydropyrimidine dehydrogenase [NADP(+)] OS=Caenorhabditis briggsae GN=dpyd-1 PE=3 SV=2

 Score =  256 bits (653), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/166 (73%), Positives = 141/166 (84%), Gaps = 3/166 (1%)

Query: 18  LVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAK 77
           L N+F DIKHTTLSERGALKEA RCLKCADAPCQKSCPTQ+DIKSFITSIS+KNYYGAA+
Sbjct: 70  LKNDFRDIKHTTLSERGALKEAMRCLKCADAPCQKSCPTQLDIKSFITSISNKNYYGAAR 129

Query: 78  AIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPP 137
           AI SDNPLGLTCGM+CPTSDLC+G CNL A+EEG INIGGLQQ+A +VFK M + QI   
Sbjct: 130 AILSDNPLGLTCGMICPTSDLCVGSCNLQASEEGAINIGGLQQYACDVFKQMNVRQIVSK 189

Query: 138 DAKVDFPDT---KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           + + +   +   +IALIGCGPAS+SCA+FL+R+GY DITIYEK  Y
Sbjct: 190 EVRENRNASHKEQIALIGCGPASISCASFLARLGYTDITIYEKRAY 235

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine. Also involved the degradation of the chemotherapeutic drug 5-fluorouracil.

Caenorhabditis briggsae (taxid: 6238)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

>sp|Q18164|DPYD_CAEEL Dihydropyrimidine dehydrogenase [NADP(+)] OS=Caenorhabditis elegans GN=dpyd-1 PE=3 SV=2

 Score =  253 bits (645), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 119/166 (71%), Positives = 140/166 (84%), Gaps = 3/166 (1%)

Query: 18  LVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAK 77
           L N+F DIKHTTLSERGALKEA RCLKCADAPCQKSCPTQ+D+KSFITSIS+KNYYGAA+
Sbjct: 70  LKNDFRDIKHTTLSERGALKEAMRCLKCADAPCQKSCPTQLDVKSFITSISNKNYYGAAR 129

Query: 78  AIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPP 137
            I SDNPLGLTCGM+CPTSDLC+G CNL A+EEG INIGGLQQ+A +VFK M + QI   
Sbjct: 130 QILSDNPLGLTCGMICPTSDLCVGSCNLQASEEGAINIGGLQQYACDVFKQMNVRQIVSK 189

Query: 138 DAKVDFPDT---KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           + + +   +   ++ALIGCGPAS+SCA+FL+R+GY DITIYEK  Y
Sbjct: 190 EVRENRNASHKEQVALIGCGPASISCASFLARLGYTDITIYEKRAY 235

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine (By similarity). Involved in the degradation of the chemotherapeutic drug 5-fluorouracil.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

>sp|Q55FT1|DPYD_DICDI Dihydropyrimidine dehydrogenase [NADP(+)] OS=Dictyostelium discoideum GN=pyd1 PE=2 SV=1

 Score =  252 bits (644), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/170 (72%), Positives = 137/170 (80%), Gaps = 5/170 (2%)

Query: 16  CSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGA 75
           C L N+F+D+K TTL+ERGAL E++RCLKCADAPCQK CPTQ+DIKSFI+SIS KNYYGA
Sbjct: 52  CELKNDFEDVKPTTLTERGALFESARCLKCADAPCQKGCPTQLDIKSFISSISTKNYYGA 111

Query: 76  AKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIR 135
           AK IFSDNPLGLTCGMVCP S LC  GCNL A EEGPINIGGLQQFATEVFK M I QIR
Sbjct: 112 AKTIFSDNPLGLTCGMVCPVSSLCQYGCNLAATEEGPINIGGLQQFATEVFKKMNIPQIR 171

Query: 136 PPDAK--VDFPDT---KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
            P        P++   KIALIGCGP S+SCATFL R+GY D+TI+EK  Y
Sbjct: 172 DPSLTPLSQLPESYKAKIALIGCGPTSISCATFLGRLGYTDVTIFEKEQY 221

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
380027208	1024	PREDICTED: dihydropyrimidine dehydrogena	0.679	0.159	0.815	7e-76
156543632	1025	PREDICTED: dihydropyrimidine dehydrogena	0.708	0.165	0.787	7e-76
110760297	1024	PREDICTED: dihydropyrimidine dehydrogena	0.708	0.166	0.787	8e-76
383863176	1027	PREDICTED: dihydropyrimidine dehydrogena	0.662	0.154	0.823	9e-76
307201146	962	Dihydropyrimidine dehydrogenase [NADP+]	0.658	0.164	0.815	3e-75
312383321	1672	hypothetical protein AND_03577 [Anophele	0.679	0.097	0.780	4e-74
157125488	1056	dihydropyrimidine dehydrogenase [Aedes a	0.695	0.158	0.798	5e-74
340720146	1022	PREDICTED: dihydropyrimidine dehydrogena	0.641	0.150	0.809	5e-74
157103945	1037	dihydropyrimidine dehydrogenase [Aedes a	0.695	0.161	0.798	5e-74
195130537	1035	GI15089 [Drosophila mojavensis] gi|19390	0.683	0.158	0.8	6e-74

>gi|380027208|ref|XP_003697321.1| PREDICTED: dihydropyrimidine dehydrogenase [NADP+]-like [Apis florea]

 Score =  289 bits (740), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 133/163 (81%), Positives = 149/163 (91%)

Query: 18  LVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAK 77
           L  NFDDIKHTTLSERGALKEA+RCLKCADAPCQKSCPTQ+DIKSFITSIS+KNYYGAAK
Sbjct: 57  LTKNFDDIKHTTLSERGALKEAARCLKCADAPCQKSCPTQLDIKSFITSISNKNYYGAAK 116

Query: 78  AIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPP 137
           AI SDNPLGLTCGMVCPTSDLC+GGCNL+A+EEGPINIGGLQQFAT++FK M ISQ R P
Sbjct: 117 AILSDNPLGLTCGMVCPTSDLCVGGCNLHASEEGPINIGGLQQFATDIFKQMNISQTRIP 176

Query: 138 DAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
             KV + DTKIAL+GCGPASLSCATFL+R+GY+++ I+EK  Y
Sbjct: 177 GQKVSYADTKIALLGCGPASLSCATFLARLGYNNVIIFEKQNY 219

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|156543632|ref|XP_001604620.1| PREDICTED: dihydropyrimidine dehydrogenase [NADP+]-like [Nasonia vitripennis]

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 137/174 (78%), Positives = 151/174 (86%), Gaps = 4/174 (2%)

Query: 11  NVFTSCS----LVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITS 66
           N+ + C     L  NFDDIKHTTLSERGAL EASRCLKCADAPCQKSCPTQ+DIKSFITS
Sbjct: 48  NIHSKCDSCTPLTKNFDDIKHTTLSERGALYEASRCLKCADAPCQKSCPTQLDIKSFITS 107

Query: 67  ISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVF 126
           IS+KNYYGAAKAIFSDNPLGLTCGMVCPTSDLC+GGCNL+A+EEGPINIGGLQQFAT++F
Sbjct: 108 ISNKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCVGGCNLFASEEGPINIGGLQQFATDIF 167

Query: 127 KDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           K M I Q R P   V   +TKIA+IGCGPASLSCATFL+R+GYDDITI+EK  Y
Sbjct: 168 KQMNIPQTRIPGQTVAHANTKIAMIGCGPASLSCATFLARLGYDDITIFEKQKY 221

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|110760297|ref|XP_393690.3| PREDICTED: dihydropyrimidine dehydrogenase [NADP+]-like isoform 1 [Apis mellifera]

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 137/174 (78%), Positives = 153/174 (87%), Gaps = 4/174 (2%)

Query: 11  NVFTSCS----LVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITS 66
           N+  +CS    L  NFDDIKHTTLSERGALKEA+RCLKCADAPCQKSCPTQ+DIKSFITS
Sbjct: 46  NINENCSKCPPLTKNFDDIKHTTLSERGALKEAARCLKCADAPCQKSCPTQLDIKSFITS 105

Query: 67  ISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVF 126
           IS+KNYYGAAKAI SDNPLGLTCGMVCPTSDLC+GGCNL+A+EEGPINIGGLQQFAT++F
Sbjct: 106 ISNKNYYGAAKAILSDNPLGLTCGMVCPTSDLCVGGCNLHASEEGPINIGGLQQFATDIF 165

Query: 127 KDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           K M ISQ R P   V   DTKIAL+GCGPASLSCATFL+R+GY++ITI+EK  Y
Sbjct: 166 KQMNISQTRIPGQNVSHADTKIALLGCGPASLSCATFLARLGYNNITIFEKQNY 219

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|383863176|ref|XP_003707058.1| PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)]-like [Megachile rotundata]

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 135/164 (82%), Positives = 147/164 (89%)

Query: 17  SLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAA 76
           SL  NFDDIKHTTLSERGALKEA+RCLKC DAPCQKSCPTQ+DIKSFITSIS+KNYYGAA
Sbjct: 55  SLTKNFDDIKHTTLSERGALKEAARCLKCTDAPCQKSCPTQLDIKSFITSISNKNYYGAA 114

Query: 77  KAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRP 136
           KAI SDNPLGLTCGMVCPTSDLC+GGCNL+A+EEGPINIGGLQQFAT++FK M I Q R 
Sbjct: 115 KAILSDNPLGLTCGMVCPTSDLCVGGCNLHASEEGPINIGGLQQFATDIFKQMNIPQTRI 174

Query: 137 PDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           P   V   DTKIALIGCGPASLSCATFL+R+GYDDITI+EK  +
Sbjct: 175 PGQSVPHADTKIALIGCGPASLSCATFLARLGYDDITIFEKQNH 218

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|307201146|gb|EFN81057.1| Dihydropyrimidine dehydrogenase [NADP+] [Harpegnathos saltator]

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 133/163 (81%), Positives = 145/163 (88%)

Query: 18  LVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAK 77
           L  NFDDIKHTTLSERGALKEA+RCLKC DAPCQKSCPTQ+DIKSFITSIS+KNYYGAAK
Sbjct: 20  LTKNFDDIKHTTLSERGALKEAARCLKCVDAPCQKSCPTQLDIKSFITSISNKNYYGAAK 79

Query: 78  AIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPP 137
           AI SDNPLGLTCGMVCPTSDLC+GGCNLYA EEGPINIGGLQ FA ++FK M I QIR P
Sbjct: 80  AILSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQHFAVDIFKRMNIPQIRIP 139

Query: 138 DAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           +  V   +TKIAL+GCGPASLSCATFL+R+GYDDITI+EK  Y
Sbjct: 140 NQTVSHANTKIALLGCGPASLSCATFLARLGYDDITIFEKEKY 182

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|312383321|gb|EFR28456.1| hypothetical protein AND_03577 [Anopheles darlingi]

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 128/164 (78%), Positives = 148/164 (90%), Gaps = 1/164 (0%)

Query: 18  LVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAK 77
           L N+F DIKHTTL ER AL+EASRCLKCADAPCQKSCPTQ+DIKSFITSI+++NYYGAAK
Sbjct: 687 LTNDFSDIKHTTLGERAALREASRCLKCADAPCQKSCPTQLDIKSFITSIANRNYYGAAK 746

Query: 78  AIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPP 137
           AIFSDNPLGLTCGMVCPTSDLC+GGCNL A EEGPINIGGLQQFAT+VF+ MG+ QIRPP
Sbjct: 747 AIFSDNPLGLTCGMVCPTSDLCVGGCNLAAVEEGPINIGGLQQFATDVFRRMGLRQIRPP 806

Query: 138 DAK-VDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           + + +  P+ +IAL+G GPASLSCATFL+R+GY DIT+YE+N Y
Sbjct: 807 NGRPLAHPNKRIALLGGGPASLSCATFLARLGYTDITVYERNAY 850

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125488|ref|XP_001654354.1| dihydropyrimidine dehydrogenase [Aedes aegypti] gi|108873619|gb|EAT37844.1| AAEL010204-PA [Aedes aegypti]

 Score =  283 bits (724), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 135/169 (79%), Positives = 152/169 (89%), Gaps = 2/169 (1%)

Query: 14  TSCS-LVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNY 72
           TSC+ L N+F DIKHTTLSER AL+EA+RCLKCADAPCQKSCPTQ+DIKSFITSI++KNY
Sbjct: 72  TSCTPLTNDFSDIKHTTLSERAALREAARCLKCADAPCQKSCPTQLDIKSFITSIANKNY 131

Query: 73  YGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGIS 132
           YGAAKAIFSDNPLGLTCGMVCPTSDLC+GGCNL AAEEG INIGGLQQFATEVFK MG+ 
Sbjct: 132 YGAAKAIFSDNPLGLTCGMVCPTSDLCVGGCNLQAAEEGAINIGGLQQFATEVFKRMGLH 191

Query: 133 QIRPPD-AKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           QI PP+ A + FP+ K+AL+G GPASLSCATFL R+GY DITIYE+ +Y
Sbjct: 192 QIVPPNVAPLKFPNKKVALLGGGPASLSCATFLGRLGYKDITIYERRSY 240

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720146|ref|XP_003398504.1| PREDICTED: dihydropyrimidine dehydrogenase [NADP+]-like isoform 2 [Bombus terrestris]

 Score =  283 bits (724), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 132/163 (80%), Positives = 144/163 (88%)

Query: 18  LVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAK 77
           L  NFDDIKHTTLSER ALKEA+RCLKC DAPCQKSCPTQ+DIKSFITSIS+KNYYGAAK
Sbjct: 57  LTKNFDDIKHTTLSERSALKEAARCLKCTDAPCQKSCPTQLDIKSFITSISNKNYYGAAK 116

Query: 78  AIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPP 137
           AI SDNPLGLTCGMVCPTSDLC+GGCNL+A+EEGPINIGGLQQFAT++FK M I Q R P
Sbjct: 117 AILSDNPLGLTCGMVCPTSDLCVGGCNLHASEEGPINIGGLQQFATDIFKQMNIPQTRIP 176

Query: 138 DAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
              V   DTKIAL GCGPASLSCA+FL+R+GYDDITI+EK  Y
Sbjct: 177 GQTVPHSDTKIALFGCGPASLSCASFLARLGYDDITIFEKENY 219

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|157103945|ref|XP_001648193.1| dihydropyrimidine dehydrogenase [Aedes aegypti] gi|108869301|gb|EAT33526.1| AAEL014199-PA [Aedes aegypti]

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 135/169 (79%), Positives = 152/169 (89%), Gaps = 2/169 (1%)

Query: 14  TSCS-LVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNY 72
           TSC+ L N+F DIKHTTLSER AL+EA+RCLKCADAPCQKSCPTQ+DIKSFITSI++KNY
Sbjct: 53  TSCTPLTNDFSDIKHTTLSERAALREAARCLKCADAPCQKSCPTQLDIKSFITSIANKNY 112

Query: 73  YGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGIS 132
           YGAAKAIFSDNPLGLTCGMVCPTSDLC+GGCNL AAEEG INIGGLQQFATEVFK MG+ 
Sbjct: 113 YGAAKAIFSDNPLGLTCGMVCPTSDLCVGGCNLQAAEEGAINIGGLQQFATEVFKRMGLH 172

Query: 133 QIRPPD-AKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           QI PP+ A + FP+ K+AL+G GPASLSCATFL R+GY DITIYE+ +Y
Sbjct: 173 QIVPPNVAPLKFPNKKVALLGGGPASLSCATFLGRLGYKDITIYERRSY 221

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195130537|ref|XP_002009708.1| GI15089 [Drosophila mojavensis] gi|193908158|gb|EDW07025.1| GI15089 [Drosophila mojavensis]

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 132/165 (80%), Positives = 151/165 (91%), Gaps = 1/165 (0%)

Query: 17  SLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAA 76
           +L NNF+DIKHTTLSERGAL+EA+RCLKCADAPCQKSCPTQ+DIKSFITSI++KN+YGAA
Sbjct: 56  TLANNFEDIKHTTLSERGALEEAARCLKCADAPCQKSCPTQLDIKSFITSIANKNFYGAA 115

Query: 77  KAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRP 136
           KAIFSDNPLGLTCGMVCPTSDLC+GGCNL A+E GPINIGGLQQFATEVFK MG+ Q R 
Sbjct: 116 KAIFSDNPLGLTCGMVCPTSDLCVGGCNLQASEAGPINIGGLQQFATEVFKQMGVHQRRA 175

Query: 137 PDAK-VDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           P+ K +  P+ KIALIG GPASLSCATFL+R+GYDD+TIYE+ +Y
Sbjct: 176 PNLKPLPQPNKKIALIGGGPASLSCATFLARLGYDDVTIYERRSY 220

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
ZFIN|ZDB-GENE-040426-2459	1022	dpydb "dihydropyrimidine dehyd	0.691	0.162	0.790	3.9e-87
UNIPROTKB|Q28007	1025	DPYD "Dihydropyrimidine dehydr	0.708	0.165	0.754	3.1e-83
UNIPROTKB|Q12882	1025	DPYD "Dihydropyrimidine dehydr	0.708	0.165	0.754	7.1e-83
UNIPROTKB|F1N549	1025	DPYD "Dihydropyrimidine dehydr	0.708	0.165	0.748	9.5e-83
UNIPROTKB|E2RSQ9	1029	DPYD "Uncharacterized protein"	0.695	0.162	0.757	1.8e-82
UNIPROTKB|Q5R895	1025	DPYD "Dihydropyrimidine dehydr	0.708	0.165	0.748	2.2e-82
MGI|MGI:2139667	1025	Dpyd "dihydropyrimidine dehydr	0.708	0.165	0.748	5e-82
RGD|621218	1025	Dpyd "dihydropyrimidine dehydr	0.708	0.165	0.748	5e-82
UNIPROTKB|O89000	1025	Dpyd "Dihydropyrimidine dehydr	0.708	0.165	0.748	5e-82
FB|FBgn0086450	1031	su(r) "suppressor of rudimenta	0.683	0.159	0.774	5.6e-82

ZFIN|ZDB-GENE-040426-2459 dpydb "dihydropyrimidine dehydrogenase b" [Danio rerio (taxid:7955)]

 Score = 714 (256.4 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
 Identities = 136/172 (79%), Positives = 151/172 (87%)

Query:    15 SC-SLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYY 73
             SC +L NNFDDIKHTTLSERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSIS+KNYY
Sbjct:    51 SCVNLENNFDDIKHTTLSERGALREALRCLKCADAPCQKSCPTNLDIKSFITSISNKNYY 110

Query:    74 GAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQ 133
             GAAKAI SDNPLGLTCGMVCPTSDLC+GGCNLYA+EEGPINIGGLQQFATEVF  MGI Q
Sbjct:   111 GAAKAILSDNPLGLTCGMVCPTSDLCVGGCNLYASEEGPINIGGLQQFATEVFSKMGIPQ 170

Query:   134 IRPPDAKV--DFPD---TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
             IR P+     + P    T+IALIGCGPAS+SCA+FL+R+GYD+ITI+EK  Y
Sbjct:   171 IRNPELPTADNMPKSFHTRIALIGCGPASISCASFLARLGYDNITIFEKQKY 222

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0004152 "dihydroorotate dehydrogenase activity" evidence=IEA

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0017113 "dihydropyrimidine dehydrogenase (NADP+) activity" evidence=IEA;ISS

GO:0006212 "uracil catabolic process" evidence=ISS

GO:0006214 "thymidine catabolic process" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

UNIPROTKB|Q28007 DPYD "Dihydropyrimidine dehydrogenase [NADP(+)]" [Bos taurus (taxid:9913)]

 Score = 698 (250.8 bits), Expect = 3.1e-83, Sum P(2) = 3.1e-83
 Identities = 132/175 (75%), Positives = 146/175 (83%)

Query:    11 NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
             N F    L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSIS+K
Sbjct:    48 NCFNCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSISNK 107

Query:    71 NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
             NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNLYA EEGPINIGGLQQ+ATEVFK M 
Sbjct:   108 NYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQYATEVFKAMN 167

Query:   131 ISQIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
             I QIR     PP+   +    KIAL+G GPAS+SCA+FL+R+GY+DITI+EK  Y
Sbjct:   168 IPQIRNPSLPPPEKMPEAYSAKIALLGAGPASISCASFLARLGYNDITIFEKQEY 222

GO:0017113 "dihydropyrimidine dehydrogenase (NADP+) activity" evidence=ISS;IDA

GO:0006214 "thymidine catabolic process" evidence=ISS

GO:0006212 "uracil catabolic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0050661 "NADP binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0019483 "beta-alanine biosynthetic process" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

UNIPROTKB|Q12882 DPYD "Dihydropyrimidine dehydrogenase [NADP(+)]" [Homo sapiens (taxid:9606)]

 Score = 695 (249.7 bits), Expect = 7.1e-83, Sum P(2) = 7.1e-83
 Identities = 132/175 (75%), Positives = 144/175 (82%)

Query:    11 NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
             N F    L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSI++K
Sbjct:    48 NCFNCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANK 107

Query:    71 NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
             NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNLYA EEGPINIGGLQQFATEVFK M 
Sbjct:   108 NYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMS 167

Query:   131 ISQIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
             I QIR     PP+   +    KIAL G GPAS+SCA+FL+R+GY DITI+EK  Y
Sbjct:   168 IPQIRNPSLPPPEKMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEY 222

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0019483 "beta-alanine biosynthetic process" evidence=IEA

GO:0017113 "dihydropyrimidine dehydrogenase (NADP+) activity" evidence=ISS;IMP;IDA;TAS

GO:0006212 "uracil catabolic process" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042803 "protein homodimerization activity" evidence=ISS;IDA

GO:0006145 "purine nucleobase catabolic process" evidence=IMP

GO:0006208 "pyrimidine nucleobase catabolic process" evidence=ISS;IMP

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISS

GO:0050661 "NADP binding" evidence=ISS

GO:0006210 "thymine catabolic process" evidence=IDA

GO:0006214 "thymidine catabolic process" evidence=IDA

GO:0006206 "pyrimidine nucleobase metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046135 "pyrimidine nucleoside catabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

UNIPROTKB|F1N549 DPYD "Dihydropyrimidine dehydrogenase [NADP(+)]" [Bos taurus (taxid:9913)]

 Score = 694 (249.4 bits), Expect = 9.5e-83, Sum P(2) = 9.5e-83
 Identities = 131/175 (74%), Positives = 145/175 (82%)

Query:    11 NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
             N F    L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSIS+K
Sbjct:    48 NCFNCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSISNK 107

Query:    71 NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
             NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNLYA EEGPINIGGLQQ+ATEVFK M 
Sbjct:   108 NYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQYATEVFKAMN 167

Query:   131 ISQIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
             I QIR     PP+   +    KI L+G GPAS+SCA+FL+R+GY+DITI+EK  Y
Sbjct:   168 IPQIRNPSLPPPEKMPEAYSAKIVLLGAGPASISCASFLARLGYNDITIFEKQEY 222

GO:0006214 "thymidine catabolic process" evidence=IEA

GO:0006212 "uracil catabolic process" evidence=IEA

GO:0006210 "thymine catabolic process" evidence=IEA

GO:0006145 "purine nucleobase catabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

UNIPROTKB|E2RSQ9 DPYD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 692 (248.7 bits), Expect = 1.8e-82, Sum P(2) = 1.8e-82
 Identities = 131/173 (75%), Positives = 145/173 (83%)

Query:    14 TSCS-LVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNY 72
             + C  L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSI++KNY
Sbjct:    24 SKCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNY 83

Query:    73 YGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGIS 132
             YGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNLYA EEGPINIGGLQQFATEVFK M I+
Sbjct:    84 YGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMNIT 143

Query:   133 QIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
             QIR     PP+   +    KIAL G GPAS+SCA+FL+R+GY DITI+EK  Y
Sbjct:   144 QIRNPSLPPPEKMPEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEY 196

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q5R895 DPYD "Dihydropyrimidine dehydrogenase [NADP(+)]" [Pongo abelii (taxid:9601)]

 Score = 690 (248.0 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
 Identities = 131/175 (74%), Positives = 143/175 (81%)

Query:    11 NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
             N F    L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSI++K
Sbjct:    48 NCFNCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANK 107

Query:    71 NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
             NYYGAAK IFSDNPLGLTCGMVCPT DLC+GGCNLYA EEGPINIGGLQQFATEVFK M 
Sbjct:   108 NYYGAAKMIFSDNPLGLTCGMVCPTPDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMS 167

Query:   131 ISQIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
             I QIR     PP+   +    KIAL G GPAS+SCA+FL+R+GY DITI+EK  Y
Sbjct:   168 IPQIRNPFLPPPEKMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEY 222

GO:0005737 "cytoplasm" evidence=ISS

GO:0006212 "uracil catabolic process" evidence=ISS

GO:0006214 "thymidine catabolic process" evidence=ISS

GO:0017113 "dihydropyrimidine dehydrogenase (NADP+) activity" evidence=ISS

MGI|MGI:2139667 Dpyd "dihydropyrimidine dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 687 (246.9 bits), Expect = 5.0e-82, Sum P(2) = 5.0e-82
 Identities = 131/175 (74%), Positives = 146/175 (83%)

Query:    11 NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
             N FT   L +NFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSI++K
Sbjct:    48 NCFTCEKLESNFDDIKHTTLGERGALREAVRCLKCADAPCQKSCPTSLDIKSFITSIANK 107

Query:    71 NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
             NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNL+AAEEGPINIGGLQQFATEVFK M 
Sbjct:   108 NYYGAAKLIFSDNPLGLTCGMVCPTSDLCVGGCNLHAAEEGPINIGGLQQFATEVFKAMN 167

Query:   131 ISQIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
             I QIR     PP+   +    KIAL G GPAS+SCA+FL+R+GY +ITI+EK  Y
Sbjct:   168 IPQIRNPSLPPPEHMPEAYSAKIALFGAGPASISCASFLARLGYSNITIFEKQEY 222

GO:0000166 "nucleotide binding" evidence=IEA

GO:0002058 "uracil binding" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004152 "dihydroorotate dehydrogenase activity" evidence=IEA

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006145 "purine nucleobase catabolic process" evidence=ISO

GO:0006208 "pyrimidine nucleobase catabolic process" evidence=ISO;IDA

GO:0006210 "thymine catabolic process" evidence=ISO

GO:0006212 "uracil catabolic process" evidence=ISO

GO:0006214 "thymidine catabolic process" evidence=ISO

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0007584 "response to nutrient" evidence=ISO

GO:0007623 "circadian rhythm" evidence=ISO

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0017113 "dihydropyrimidine dehydrogenase (NADP+) activity" evidence=ISO;IDA

GO:0019860 "uracil metabolic process" evidence=ISO

GO:0042493 "response to drug" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0050661 "NADP binding" evidence=ISO

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO;IDA

RGD|621218 Dpyd "dihydropyrimidine dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 687 (246.9 bits), Expect = 5.0e-82, Sum P(2) = 5.0e-82
 Identities = 131/175 (74%), Positives = 144/175 (82%)

Query:    11 NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
             N F    L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSI++K
Sbjct:    48 NCFICEKLENNFDDIKHTTLGERGALREAVRCLKCADAPCQKSCPTSLDIKSFITSIANK 107

Query:    71 NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
             NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNL+A EEGPINIGGLQQFATEVFK M 
Sbjct:   108 NYYGAAKLIFSDNPLGLTCGMVCPTSDLCVGGCNLHATEEGPINIGGLQQFATEVFKAMN 167

Query:   131 ISQIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
             I QIR     PP+   +    KIAL G GPAS+SCA+FL+R+GY DITI+EK  Y
Sbjct:   168 IPQIRSPLLPPPEHMPEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEY 222

GO:0002058 "uracil binding" evidence=IDA

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006145 "purine nucleobase catabolic process" evidence=ISO

GO:0006208 "pyrimidine nucleobase catabolic process" evidence=ISO;IDA;TAS

GO:0006210 "thymine catabolic process" evidence=ISO

GO:0006212 "uracil catabolic process" evidence=ISO;ISS

GO:0006214 "thymidine catabolic process" evidence=ISO;ISS

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0007584 "response to nutrient" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0017113 "dihydropyrimidine dehydrogenase (NADP+) activity" evidence=ISO;ISS;IDA

GO:0019483 "beta-alanine biosynthetic process" evidence=IEA

GO:0019860 "uracil metabolic process" evidence=IDA

GO:0042493 "response to drug" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=ISO;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IDA

GO:0051384 "response to glucocorticoid stimulus" evidence=IEP

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|O89000 Dpyd "Dihydropyrimidine dehydrogenase [NADP(+)]" [Rattus norvegicus (taxid:10116)]

 Score = 687 (246.9 bits), Expect = 5.0e-82, Sum P(2) = 5.0e-82
 Identities = 131/175 (74%), Positives = 144/175 (82%)

Query:    11 NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
             N F    L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSI++K
Sbjct:    48 NCFICEKLENNFDDIKHTTLGERGALREAVRCLKCADAPCQKSCPTSLDIKSFITSIANK 107

Query:    71 NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
             NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNL+A EEGPINIGGLQQFATEVFK M 
Sbjct:   108 NYYGAAKLIFSDNPLGLTCGMVCPTSDLCVGGCNLHATEEGPINIGGLQQFATEVFKAMN 167

Query:   131 ISQIR-----PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
             I QIR     PP+   +    KIAL G GPAS+SCA+FL+R+GY DITI+EK  Y
Sbjct:   168 IPQIRSPLLPPPEHMPEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEY 222

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

FB|FBgn0086450 su(r) "suppressor of rudimentary" [Drosophila melanogaster (taxid:7227)]

 Score = 688 (247.2 bits), Expect = 5.6e-82, Sum P(2) = 5.6e-82
 Identities = 127/164 (77%), Positives = 146/164 (89%)

Query:    17 SLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAA 76
             +L N+F DIKHTTLSERGAL+EA+RCLKCADAPCQKSCPTQ+DIKSFITSI++KN+YGAA
Sbjct:    56 TLANDFSDIKHTTLSERGALEEAARCLKCADAPCQKSCPTQLDIKSFITSIANKNFYGAA 115

Query:    77 KAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRP 136
             KAIFSDNPLGLTCGMVCPTSDLC+GGCNL A+E GPINIGGLQQFATEVFK MG+ Q R 
Sbjct:   116 KAIFSDNPLGLTCGMVCPTSDLCVGGCNLQASEAGPINIGGLQQFATEVFKKMGVRQRRT 175

Query:   137 PDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
             P A+ +    KIAL+G  PASLSCATFL+R+GY D+TIYE+ +Y
Sbjct:   176 PQAEANPLSQKIALVGGEPASLSCATFLARLGYRDVTIYERRSY 219

GO:0004159 "dihydrouracil dehydrogenase (NAD+) activity" evidence=TAS

GO:0017113 "dihydropyrimidine dehydrogenase (NADP+) activity" evidence=ISS;NAS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R895	DPYD_PONAB	1, ., 3, ., 1, ., 2	0.7485	0.7083	0.1658	yes	N/A
Q55FT1	DPYD_DICDI	1, ., 3, ., 1, ., 2	0.7235	0.6875	0.1635	yes	N/A
Q28007	DPYD_BOVIN	1, ., 3, ., 1, ., 2	0.7542	0.7083	0.1658	yes	N/A
Q28943	DPYD_PIG	1, ., 3, ., 1, ., 2	0.7428	0.7083	0.1658	yes	N/A
Q8CHR6	DPYD_MOUSE	1, ., 3, ., 1, ., 2	0.7485	0.7083	0.1658	yes	N/A
Q12882	DPYD_HUMAN	1, ., 3, ., 1, ., 2	0.7542	0.7083	0.1658	yes	N/A
Q6NYG8	DPYD_DANRE	1, ., 3, ., 1, ., 2	0.75	0.7208	0.1692	yes	N/A
O89000	DPYD_RAT	1, ., 3, ., 1, ., 2	0.7485	0.7083	0.1658	yes	N/A
Q18164	DPYD_CAEEL	1, ., 3, ., 1, ., 2	0.7168	0.6791	0.1539	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	240
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	1e-51
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	1e-36
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	6e-31
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	5e-30
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	7e-30
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	2e-28
TIGR01318	467	TIGR01318, gltD_gamma_fam, glutamate synthase smal	2e-22
PRK12775	1006	PRK12775, PRK12775, putative trifunctional 2-polyp	9e-22
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	8e-21
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	3e-20
PRK13984	604	PRK13984, PRK13984, putative oxidoreductase; Provi	1e-19
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	1e-19
PRK12769	654	PRK12769, PRK12769, putative oxidoreductase Fe-S b	1e-18
PRK12809	639	PRK12809, PRK12809, putative oxidoreductase Fe-S b	2e-18
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	4e-15
TIGR01317	485	TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH	8e-11
cd02940	299	cd02940, DHPD_FMN, Dihydropyrimidine dehydrogenase	5e-10
PRK12779	944	PRK12779, PRK12779, putative bifunctional glutamat	7e-10
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	3e-04
COG2907	447	COG2907, COG2907, Predicted NAD/FAD-binding protei	3e-04
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	7e-04
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	0.001
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	0.001
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	0.002
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	0.002

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score =  173 bits (441), Expect = 1e-51
 Identities = 67/163 (41%), Positives = 89/163 (54%), Gaps = 11/163 (6%)

Query: 18  LVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAK 77
              NFD++     +   A++EASRCL+C DAPC K+CP  IDI  FI  I+  N  GAA+
Sbjct: 19  RAQNFDEV-APGYTPEEAIEEASRCLQCKDAPCVKACPVSIDIPEFIRLIAEGNLKGAAE 77

Query: 78  AIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPP 137
            I   NPL   CG VCP   LC G C      E P+ IG L+++ T+   + G    +  
Sbjct: 78  TILETNPLPAVCGRVCPQERLCEGACVRGKKGE-PVAIGRLERYITDWAMETGWVLFKRA 136

Query: 138 DAKVDFPDT--KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
                 P T  K+A+IG GPA L+ A  L+R GY D+TI+E  
Sbjct: 137 ------PKTGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEAR 172

Length = 457

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score =  133 bits (337), Expect = 1e-36
 Identities = 62/158 (39%), Positives = 87/158 (55%), Gaps = 7/158 (4%)

Query: 19  VNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKA 78
             NF+++     +E  A+KEASRCL+C    C K CP  I+I  FI+ +   ++  AAK 
Sbjct: 20  ATNFEEV-CLGYNEEEAVKEASRCLQCKKPKCVKGCPVSINIPGFISKLKEGDFEEAAKI 78

Query: 79  IFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPD 138
           I   N L   CG VCP    C G C L    E P+ IG L++F  +  ++ GI      +
Sbjct: 79  IAKYNALPAVCGRVCPQESQCEGKCVLGIKGE-PVAIGKLERFVADWARENGIDLSETEE 137

Query: 139 AKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYE 176
            K      K+A+IG GPA L+CA  L++MGY D+TI+E
Sbjct: 138 KK----GKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFE 170

Length = 464

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score =  118 bits (297), Expect = 6e-31
 Identities = 55/159 (34%), Positives = 76/159 (47%), Gaps = 7/159 (4%)

Query: 19  VNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKA 78
             +F +          A+ EA+RCL C D PC   CP   DI   I  +     + A K 
Sbjct: 3   PKDFREA-VVGSGPEAAIYEAARCLDCGD-PCITGCPVHNDIPEPIGLVREGVDHEAIKL 60

Query: 79  IFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPD 138
           I   N L    G VCP  +LC G C L   EE P+NIG L++   +     G      P 
Sbjct: 61  IHKTNNLPAITGRVCPLGNLCEGACVLG-IEELPVNIGALERAIGDKADREGWIPGELPG 119

Query: 139 AKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177
           ++      K+A+IG GPA L+ A  LSR G+ D+T++E+
Sbjct: 120 SRTGK---KVAVIGAGPAGLAAADDLSRAGH-DVTVFER 154

Length = 457

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score =  117 bits (294), Expect = 5e-30
 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 17/164 (10%)

Query: 19  VNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKA 78
            N F+++ +  L++  A+ EA RCL C +  C + CP  IDI  FI +I   N+  AAK 
Sbjct: 309 HNRFEEV-NLGLTKEQAMTEAKRCLDCKNPGCVEGCPVGIDIPRFIKNIERGNFLEAAKI 367

Query: 79  IFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPD 138
           +   + L   CG VCP    C   C      E  + IG L++F  +  ++ G        
Sbjct: 368 LKETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESG-------- 419

Query: 139 AKVDFPDT------KIALIGCGPASLSCATFLSRMGYDDITIYE 176
             +  P+       K+A+IG GPA LS A  L++ GY D+T++E
Sbjct: 420 -NISVPEVAEKNGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFE 461

Length = 752

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score =  115 bits (289), Expect = 7e-30
 Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 9/151 (5%)

Query: 31  SERGALKEASRCLKCADA--PCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLT 88
           +E+ AL EA RCL C DA  PC K CP  + I  FI  I   ++ GA   I + + L   
Sbjct: 17  TEQLALVEAQRCLNCKDATKPCIKGCPVHVPIPEFIAKIQEGDFKGAVDIIKTTSLLPAI 76

Query: 89  CGMVCPTSDLCMGGCNLYAAEEG---PINIGGLQQFATEVFKDMGISQIRPPDAKVDFPD 145
           CG VCP    C G C +    +    P++IG L++F  +  +  GI        K     
Sbjct: 77  CGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETE---PEKAPSTH 133

Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYE 176
            K+A+IG GPA L+CA+ L++ G+  +T++E
Sbjct: 134 KKVAVIGAGPAGLACASELAKAGH-SVTVFE 163

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score =  111 bits (280), Expect = 2e-28
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 21  NFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIF 80
           +F +  +   SE  A  +A+RC+ C    C   CP    I  +   +    +  AA+ + 
Sbjct: 26  DFKEF-YEPFSEEQAKIQAARCMDCGIPFCHWGCPVHNYIPEWNDLVYRGRWEEAAERLH 84

Query: 81  SDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAK 140
             N      G VCP    C G C L     GP+ I  ++++  +   + G  +  PP  +
Sbjct: 85  QTNNFPEFTGRVCPAP--CEGACTL-NINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKR 141

Query: 141 VDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
                 K+A++G GPA L+ A  L+R G+  +T++E+ 
Sbjct: 142 TGK---KVAVVGSGPAGLAAADQLARAGH-KVTVFERA 175

Length = 471

>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial

 Score = 94.5 bits (235), Expect = 2e-22
 Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 5/147 (3%)

Query: 22  FDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFS 81
           F +I +       A  +A RCL C +  C+  CP    I  ++  +       AA+    
Sbjct: 23  FREI-YCPFDPGQAQYQADRCLYCGNPYCEWKCPVHNAIPQWLQLVQEGRIDEAAELSHQ 81

Query: 82  DNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKV 141
            N L   CG VCP   LC G C L   E G + IG L+++ T+    MG    RP  + V
Sbjct: 82  TNTLPEICGRVCPQDRLCEGACTL-NDEFGAVTIGNLERYITDTALAMG---WRPDLSHV 137

Query: 142 DFPDTKIALIGCGPASLSCATFLSRMG 168
                ++A+IG GPA L+CA  L+R G
Sbjct: 138 VPTGKRVAVIGAGPAGLACADILARAG 164

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467

>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

 Score = 93.5 bits (232), Expect = 9e-22
 Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 21/178 (11%)

Query: 1   MPEQSSLAGINVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDI 60
           MPE+ ++     F   +L  + +D          AL+EA RC++CA   C   CP QIDI
Sbjct: 302 MPERDAVERARNFKEVNLGYSLED----------ALQEAERCIQCAKPTCIAGCPVQIDI 351

Query: 61  KSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQ 120
             FI  +  +++ GA + I+  +     CG VCP    C   C + A +   + IG L++
Sbjct: 352 PVFIRHVVVRDFDGALEVIYEASIFPSICGRVCPQETQCEAQC-IIAKKHESVGIGRLER 410

Query: 121 FATEVFKDMGISQIRPPDAKVDFPDT--KIALIGCGPASLSCATFLSRMGYDDITIYE 176
           F       +G +    P     F     K+A+ G GPA L+ A  L + G  D+T+YE
Sbjct: 411 F-------VGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLVKYGV-DVTVYE 460

Length = 1006

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 90.3 bits (225), Expect = 8e-21
 Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 12/132 (9%)

Query: 49  PCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAA 108
           PC  +CP   DI+ ++  +   +Y  A + +  DNP     G VC     C  GCN    
Sbjct: 48  PCNAACPAGEDIRGWLALVRGGDYEYAWRRLTKDNPFPAVMGRVCYHP--CESGCN-RGQ 104

Query: 109 EEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDT--KIALIGCGPASLSCATFLSR 166
            +  + I  +++F      D  I+      A    PDT  ++A+IG GPA LS A  L R
Sbjct: 105 VDDAVGINAVERFLG----DYAIANGWKFPA--PAPDTGKRVAVIGGGPAGLSAAYHLRR 158

Query: 167 MGYDDITIYEKN 178
           MG+  +TI+E  
Sbjct: 159 MGH-AVTIFEAG 169

Length = 564

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 12/149 (8%)

Query: 45  CADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGC- 103
           C  APC  +CP   DI  +I  +    Y  A + I+  N L    G +C     C   C 
Sbjct: 444 CYVAPCVTACPINQDIPEYIRLVGEGRYAEALELIYQRNALPAITGHICDHQ--CQYNCT 501

Query: 104 -NLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCAT 162
              Y   +  +NI  L++ A E   D    +   P         K+A+IG GPA L+ A 
Sbjct: 502 RLDY---DEAVNIRELKKVALEKGWDEYKQRWHKPAGIGS--RKKVAVIGAGPAGLAAAY 556

Query: 163 FLSRMGYDDITIYEK--NTYDMVTNVSPR 189
           FL+R G+  +T++E+  N   +V N+ P+
Sbjct: 557 FLARAGH-PVTVFEREENAGGVVKNIIPQ 584

Length = 1019

>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional

 Score = 87.1 bits (216), Expect = 1e-19
 Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 8/146 (5%)

Query: 31  SERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCG 90
           S+  A++EA+RC++C    C  +CP  +DI  +I +I   +     + ++  NPL + CG
Sbjct: 176 SKEQAMQEAARCVECG--ICTDTCPAHMDIPQYIKAIYKDDLEEGLRWLYKTNPLSMVCG 233

Query: 91  MVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIAL 150
            VC  +  C   C++    E PI I  L+++  +       S+I   D + +  + K+A+
Sbjct: 234 RVC--THKCETVCSIGHRGE-PIAIRWLKRYIVDNVPVEKYSEIL--DDEPEKKNKKVAI 288

Query: 151 IGCGPASLSCATFLSRMGYDDITIYE 176
           +G GPA LS A FL+ MGY ++T+YE
Sbjct: 289 VGSGPAGLSAAYFLATMGY-EVTVYE 313

Length = 604

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 87.2 bits (216), Expect = 1e-19
 Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 8/165 (4%)

Query: 26  KHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPL 85
           K     E   L++      C  APC   CP   DI  +I  +  K Y  A + I+  NPL
Sbjct: 423 KEWRPVESRKLRKTLPLTDCYVAPCTTGCPINQDIPEYIRLVGEKRYLEALEVIYDKNPL 482

Query: 86  GLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPD 145
               G +C     C   C     +E  +NI  +++ A E   D   ++   P  K     
Sbjct: 483 PAITGTIC--DHQCQYKCTRLDYDE-SVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAH- 538

Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEK--NTYDMVTNVSP 188
            K+A+IG GPA LS   FL+R G+  +T++EK      +V N+ P
Sbjct: 539 -KVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEKPGGVVKNIIP 581

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed

 Score = 84.0 bits (208), Expect = 1e-18
 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 14/155 (9%)

Query: 19  VNNFDDIKHTTLSERGALKEASRCLKCAD-APCQKSCPTQIDIKSFITSISHKNYYGAAK 77
              FD+I         A +EASRCLKC + + C+ +CP    I  +I  +   N   A +
Sbjct: 205 KTGFDEIYLP-FRADQAQREASRCLKCGEHSICEWTCPLHNHIPQWIELVKAGNIDAAVE 263

Query: 78  AIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG----ISQ 133
                N L    G VCP   LC G C L   E G + IG ++++ ++     G    +SQ
Sbjct: 264 LSHQTNSLPEITGRVCPQDRLCEGACTL-RDEYGAVTIGNIERYISDQALAKGWRPDLSQ 322

Query: 134 IRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMG 168
           +   D +V       A+IG GPA L+CA  L+R G
Sbjct: 323 VTKSDKRV-------AIIGAGPAGLACADVLARNG 350

Length = 654

>gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit; Reviewed

 Score = 83.2 bits (205), Expect = 2e-18
 Identities = 52/150 (34%), Positives = 73/150 (48%), Gaps = 6/150 (4%)

Query: 20  NNFDDIKHTTLSERGALKEASRCLKCAD-APCQKSCPTQIDIKSFITSISHKNYYGAAKA 78
            +F +I +  L  + A  E+ RC+ CA+ A C   CP    I  +I  +       AA+ 
Sbjct: 189 THFGEI-YCGLDPQQATYESDRCVYCAEKANCNWHCPLHNAIPDYIRLVQEGKIIEAAEL 247

Query: 79  IFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPD 138
               + L   CG VCP   LC G C L     G ++IG L+++ T+    MG    RP  
Sbjct: 248 CHQTSSLPEICGRVCPQDRLCEGACTL-KDHSGAVSIGNLERYITDTALAMG---WRPDV 303

Query: 139 AKVDFPDTKIALIGCGPASLSCATFLSRMG 168
           +KV     K+A+IG GPA L CA  L+R G
Sbjct: 304 SKVVPRSEKVAVIGAGPAGLGCADILARAG 333

Length = 639

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 74.0 bits (182), Expect = 4e-15
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 18/145 (12%)

Query: 39  ASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDL 98
              C  C   PC+ +CP   +I  FI +I+  +   A + I    PL    G +CP    
Sbjct: 94  EQHCGDC-LGPCELACPAGCNIPGFIAAIARGDDREAIRIIKETIPLPGILGRICPAP-- 150

Query: 99  CMGGCNLYAAEEGPINIGGLQQFATEVFKDMG-----ISQIRPPDAKVDFPDTKIALIGC 153
           C   C  +  +E P++I  L+++A +  +DM      I +  P   K      K+A+IG 
Sbjct: 151 CEEACRRHGVDE-PVSICALKRYAAD--RDMESAERYIPERAPKSGK------KVAIIGA 201

Query: 154 GPASLSCATFLSRMGYDDITIYEKN 178
           GPA L+ A +L R G+ D+TI++ N
Sbjct: 202 GPAGLTAAYYLLRKGH-DVTIFDAN 225

Length = 652

>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit

 Score = 61.0 bits (148), Expect = 8e-11
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 10/162 (6%)

Query: 19  VNNFDDIKHTTLSERGALKEASRCLKCADAPCQKS--CPTQIDIKSFITSISHKNYYGAA 76
           + ++ +       +  A  +A+RC+ C    C     CP    I  F   +    +  A 
Sbjct: 22  LKDWKEF-TNPFDKESAKYQAARCMDCGTPFCHNDSGCPLNNLIPEFNDLVFRGRWKEAL 80

Query: 77  KAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRP 136
             + + N      G VCP    C G C L    E P+ I  +++   +     G  Q RP
Sbjct: 81  DRLHATNNFPEFTGRVCPAP--CEGACTL-GISEDPVGIKSIERIIIDKGFQEGWVQPRP 137

Query: 137 PDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
           P  +      K+A++G GPA L+ A  L+R G+  +T++E+ 
Sbjct: 138 PSKRTGK---KVAVVGSGPAGLAAADQLNRAGH-TVTVFERE 175

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485

>gnl|CDD|239244 cd02940, DHPD_FMN, Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

 Score = 58.1 bits (141), Expect = 5e-10
 Identities = 23/42 (54%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV 222
           D+VTNVSPRI +  TS    G  Q  F NIELISEK    W+
Sbjct: 50  DIVTNVSPRIARLRTS----GRGQIGFNNIELISEKPLEYWL 87

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. Length = 299

>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

 Score = 58.3 bits (141), Expect = 7e-10
 Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 24/157 (15%)

Query: 38  EASRCLKCADAPCQ------------KSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPL 85
           E  R  +C D PC+              CP +I I   +  + +  +  A + I S NPL
Sbjct: 186 EVMRDKQCDDKPCELGVLVQGKAEPKGGCPVKIHIPEMLDLLGNGKHREALELIESCNPL 245

Query: 86  GLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRP------PDA 139
               G VCP    C G C      + PI IG L+ +  +  K +  +          P A
Sbjct: 246 PNVTGRVCPQELQCQGVC---THTKRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWA 302

Query: 140 KVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYE 176
               P   IA++G GP+ L  A  L+  G+  +T++E
Sbjct: 303 AAVKP--PIAVVGSGPSGLINAYLLAVEGF-PVTVFE 336

Length = 944

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
           P   + +IG G   L+ A  L+R G   +T+ EKN 
Sbjct: 2   PMYDVVVIGAGLNGLAAAALLARAGL-KVTVLEKND 36

Length = 487

>gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only]

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           P  KIA+IG G + LS A  LSR    D+T++E +  
Sbjct: 7   PRRKIAVIGSGISGLSAAWLLSR--RHDVTLFEADRR 41

Length = 447

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
               +A++G GPA L+ A  L+R G  D+T+ E+  
Sbjct: 1   KMLDVAIVGAGPAGLALALALARAGL-DVTLLERAP 35

Length = 387

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 10/56 (17%)

Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEK----------NTYDMVTNVSPR 189
             T +A+IG G + L+ A  L + G  D  I+EK          N Y  +   SP+
Sbjct: 7   THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPK 62

Length = 443

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 14/31 (45%), Positives = 24/31 (77%), Gaps = 1/31 (3%)

Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEK 177
           K+A+IG GPA L+ A +L+ +GY ++ +Y+K
Sbjct: 20  KVAIIGAGPAGLAAAGYLACLGY-EVHVYDK 49

Length = 352

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 151 IGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           +G G + L  A  L++ G  D+ + EK   
Sbjct: 2   VGAGLSGLVAAYLLAKRGK-DVLVLEKRDR 30

Length = 66

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 10/39 (25%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           D+ +  +A++G GP+ L+ A +L++ G   + ++E+   
Sbjct: 22  DYLEVDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKLS 59

Length = 257

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
PRK12831	464	putative oxidoreductase; Provisional	100.0
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	100.0
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	100.0
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	100.0
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	100.0
PRK12779	944	putative bifunctional glutamate synthase subunit b	100.0
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	100.0
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	100.0
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	100.0
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	100.0
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	100.0
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	100.0
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	100.0
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	100.0
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	100.0
PRK12814	652	putative NADPH-dependent glutamate synthase small	100.0
PRK06567	1028	putative bifunctional glutamate synthase subunit b	100.0
KOG0399|consensus	2142		100.0
PRK13984	604	putative oxidoreductase; Provisional	100.0
PF14691	111	Fer4_20: Dihydroprymidine dehydrogenase domain II,	100.0
PLN02852	491	ferredoxin-NADP+ reductase	99.18
PTZ00188	506	adrenodoxin reductase; Provisional	99.17
KOG1800|consensus	468		99.09
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.39
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.36
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.3
PLN02487	569	zeta-carotene desaturase	98.28
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.28
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.22
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.21
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.17
COG3349	485	Uncharacterized conserved protein [Function unknow	98.15
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.14
KOG0029|consensus	501		98.13
KOG1399|consensus	448		98.11
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.08
PRK07233	434	hypothetical protein; Provisional	98.07
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.07
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.02
PLN02576	496	protoporphyrinogen oxidase	98.01
PRK08163	396	salicylate hydroxylase; Provisional	97.98
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.97
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.96
PLN02268	435	probable polyamine oxidase	97.96
PRK07045	388	putative monooxygenase; Reviewed	97.96
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.95
PRK06847	375	hypothetical protein; Provisional	97.94
PRK07208	479	hypothetical protein; Provisional	97.94
PRK06753	373	hypothetical protein; Provisional	97.93
PRK07236	386	hypothetical protein; Provisional	97.92
PRK06475	400	salicylate hydroxylase; Provisional	97.91
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.9
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	97.89
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.89
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	97.88
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	97.87
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.87
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	97.86
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.86
PRK13977	576	myosin-cross-reactive antigen; Provisional	97.86
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.85
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.85
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.85
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.84
PRK07588	391	hypothetical protein; Provisional	97.84
PRK09126	392	hypothetical protein; Provisional	97.83
KOG1276|consensus	491		97.83
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	97.83
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.82
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.81
PRK10157	428	putative oxidoreductase FixC; Provisional	97.81
PRK10015	429	oxidoreductase; Provisional	97.8
PRK06184	502	hypothetical protein; Provisional	97.79
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.79
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.79
PRK05868	372	hypothetical protein; Validated	97.79
PRK07538	413	hypothetical protein; Provisional	97.78
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.78
PRK08244	493	hypothetical protein; Provisional	97.78
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.76
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.76
PRK08013	400	oxidoreductase; Provisional	97.76
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.75
PRK10262	321	thioredoxin reductase; Provisional	97.75
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.75
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.74
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.72
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.71
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.71
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.7
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.69
PRK06126	545	hypothetical protein; Provisional	97.68
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.68
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.68
COG2081	408	Predicted flavoproteins [General function predicti	97.68
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.68
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	97.68
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.67
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.67
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.66
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.66
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.65
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.65
PRK06185	407	hypothetical protein; Provisional	97.65
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.64
PRK06370	463	mercuric reductase; Validated	97.64
PRK14694	468	putative mercuric reductase; Provisional	97.64
PRK06116	450	glutathione reductase; Validated	97.63
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.63
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.62
PLN02612	567	phytoene desaturase	97.62
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.61
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.61
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.61
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.61
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.6
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.59
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.59
PLN02529	738	lysine-specific histone demethylase 1	97.58
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.58
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.57
TIGR02053	463	MerA mercuric reductase. This model represents the	97.57
PLN02568	539	polyamine oxidase	97.56
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.53
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.52
PLN02463	447	lycopene beta cyclase	97.52
PRK06834	488	hypothetical protein; Provisional	97.52
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.52
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.51
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.51
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.5
PRK07190	487	hypothetical protein; Provisional	97.49
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.49
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.48
PRK11445	351	putative oxidoreductase; Provisional	97.48
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.48
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.48
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.48
PRK11728	393	hydroxyglutarate oxidase; Provisional	97.47
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.47
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.47
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.46
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.46
PRK08294	634	phenol 2-monooxygenase; Provisional	97.46
KOG0685|consensus	498		97.45
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	97.45
PLN02985	514	squalene monooxygenase	97.43
PRK13748	561	putative mercuric reductase; Provisional	97.43
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.43
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	97.41
KOG2614|consensus	420		97.4
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.39
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.39
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.38
PTZ00367	567	squalene epoxidase; Provisional	97.36
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.35
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.35
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	97.34
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.32
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.32
PLN02676	487	polyamine oxidase	97.3
PRK08274	466	tricarballylate dehydrogenase; Validated	97.29
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.29
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.28
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.27
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.26
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.26
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.25
PLN03000	881	amine oxidase	97.25
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.23
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.22
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.21
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.21
PRK07121	492	hypothetical protein; Validated	97.21
PLN02697	529	lycopene epsilon cyclase	97.18
PLN02661	357	Putative thiazole synthesis	97.18
PRK06996	398	hypothetical protein; Provisional	97.15
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.14
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.14
COG1152	772	CdhA CO dehydrogenase/acetyl-CoA synthase alpha su	97.14
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	97.12
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.12
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.12
PTZ00058	561	glutathione reductase; Provisional	97.12
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.11
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.1
PRK14727	479	putative mercuric reductase; Provisional	97.09
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.08
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.06
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.04
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.01
PRK12842	574	putative succinate dehydrogenase; Reviewed	97.01
PRK08401	466	L-aspartate oxidase; Provisional	97.01
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.01
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	97.0
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.99
PRK05257	494	malate:quinone oxidoreductase; Validated	96.98
PLN02507	499	glutathione reductase	96.97
PLN02464	627	glycerol-3-phosphate dehydrogenase	96.97
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.97
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	96.96
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.96
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	96.95
PTZ00052	499	thioredoxin reductase; Provisional	96.94
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	96.93
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	96.92
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.91
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	96.91
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	96.9
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	96.89
PRK06370	463	mercuric reductase; Validated	96.87
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	96.87
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	96.87
TIGR02053	463	MerA mercuric reductase. This model represents the	96.86
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.85
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	96.85
PRK09897	534	hypothetical protein; Provisional	96.85
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	96.81
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	96.8
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	96.78
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.78
PLN02546	558	glutathione reductase	96.77
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	96.77
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	96.77
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.76
PRK07804	541	L-aspartate oxidase; Provisional	96.76
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.75
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.74
PLN02976	1713	amine oxidase	96.74
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	96.72
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	96.72
PRK12839	572	hypothetical protein; Provisional	96.72
PRK13339	497	malate:quinone oxidoreductase; Reviewed	96.71
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.71
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.71
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.7
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.7
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.7
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.69
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	96.68
PTZ00383	497	malate:quinone oxidoreductase; Provisional	96.67
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.67
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	96.66
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	96.62
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.62
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	96.62
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	96.61
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	96.6
PRK06116	450	glutathione reductase; Validated	96.59
PLN02507	499	glutathione reductase	96.58
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.57
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	96.57
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	96.57
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.56
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	96.56
PRK07845	466	flavoprotein disulfide reductase; Reviewed	96.55
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	96.54
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.54
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	96.54
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	96.54
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	96.53
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	96.52
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	96.52
PRK12831	464	putative oxidoreductase; Provisional	96.52
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.52
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.51
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.5
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	96.49
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	96.49
PTZ00058	561	glutathione reductase; Provisional	96.49
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	96.48
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	96.47
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	96.47
PRK14694	468	putative mercuric reductase; Provisional	96.46
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	96.46
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	96.43
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.43
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	96.42
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.41
cd01916	731	ACS_1 Acetyl-CoA synthase (ACS), also known as ace	96.41
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.4
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	96.4
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.39
PRK08275	554	putative oxidoreductase; Provisional	96.38
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.38
PLN02546	558	glutathione reductase	96.37
KOG2820|consensus	399		96.37
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.37
PRK13748	561	putative mercuric reductase; Provisional	96.35
PRK10262	321	thioredoxin reductase; Provisional	96.32
PRK06175	433	L-aspartate oxidase; Provisional	96.32
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	96.29
COG0579	429	Predicted dehydrogenase [General function predicti	96.29
PRK07395	553	L-aspartate oxidase; Provisional	96.28
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	96.25
PRK14727	479	putative mercuric reductase; Provisional	96.24
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.24
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.23
COG1150	195	HdrC Heterodisulfide reductase, subunit C [Energy	96.22
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	96.18
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	96.17
PRK08071	510	L-aspartate oxidase; Provisional	96.17
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.16
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	96.16
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.16
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.16
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.13
PTZ00052	499	thioredoxin reductase; Provisional	96.13
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	96.12
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	96.11
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	96.09
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	96.06
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.05
KOG2852|consensus	380		96.03
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.99
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	95.95
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	95.94
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	95.94
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.9
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	95.9
PRK07846	451	mycothione reductase; Reviewed	95.89
PTZ00153	659	lipoamide dehydrogenase; Provisional	95.89
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.87
PRK09077	536	L-aspartate oxidase; Provisional	95.84
PRK02106	560	choline dehydrogenase; Validated	95.84
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	95.83
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	95.83
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	95.82
PLN02815	594	L-aspartate oxidase	95.81
KOG2415|consensus	621		95.77
TIGR00314	784	cdhA CO dehydrogenase/acetyl-CoA synthase complex,	95.76
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	95.76
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	95.76
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	95.74
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.67
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.66
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.61
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.61
PRK00941	781	acetyl-CoA decarbonylase/synthase complex subunit	95.61
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	95.6
KOG1298|consensus	509		95.59
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	95.58
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	95.55
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	95.55
PRK07512	513	L-aspartate oxidase; Provisional	95.52
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	95.5
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.5
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.49
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	95.47
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	95.45
PRK07846	451	mycothione reductase; Reviewed	95.41
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	95.39
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.39
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.38
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.35
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.33
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	95.32
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.29
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	95.27
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.26
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	95.24
PRK04148	134	hypothetical protein; Provisional	95.23
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.2
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	95.2
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.18
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.1
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.08
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.06
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.97
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.95
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	94.9
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.8
KOG1335|consensus	506		94.8
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.8
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	94.76
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	94.74
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	94.58
PRK09496	453	trkA potassium transporter peripheral membrane com	94.53
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.51
KOG1336|consensus	478		94.51
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	94.5
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.5
PRK12779	944	putative bifunctional glutamate synthase subunit b	94.48
COG1453	391	Predicted oxidoreductases of the aldo/keto reducta	94.48
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.48
COG3573	552	Predicted oxidoreductase [General function predict	94.45
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.45
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.37
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.34
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	94.33
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	94.25
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	94.23
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	94.2
KOG1335|consensus	506		94.16
KOG0404|consensus	322		94.14
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.12
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.12
PF13183	57	Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_	94.11
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.08
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.05
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	94.04
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	94.02
PRK10669	558	putative cation:proton antiport protein; Provision	93.95
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	93.95
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.95
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	93.92
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.92
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.9
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.89
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.87
PRK06259	486	succinate dehydrogenase/fumarate reductase iron-su	93.87
PRK08306	296	dipicolinate synthase subunit A; Reviewed	93.87
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	93.85
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.84
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	93.83
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	93.78
KOG4254|consensus	561		93.78
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	93.7
KOG2853|consensus	509		93.69
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	93.67
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	93.66
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.64
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	93.63
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	93.5
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	93.46
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.43
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.43
TIGR03290	144	CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, s	93.42
KOG2960|consensus	328		93.41
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.38
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.22
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.2
PLN02785	587	Protein HOTHEAD	93.18
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	93.14
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	93.09
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	93.09
KOG4716|consensus	503		93.09
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	93.09
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	93.08
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	93.07
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	93.04
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	93.03
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	93.03
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	92.96
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.94
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	92.91
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	92.85
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	92.73
PRK09496	453	trkA potassium transporter peripheral membrane com	92.72
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	92.68
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	92.68
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	92.64
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	92.64
PRK08328	231	hypothetical protein; Provisional	92.5
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	92.48
PRK03659	601	glutathione-regulated potassium-efflux system prot	92.46
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.43
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	92.36
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	92.36
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	92.34
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	92.32
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	92.28
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	92.26
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.25
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	92.22
PRK07417	279	arogenate dehydrogenase; Reviewed	92.21
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	92.19
KOG2404|consensus	477		92.16
PRK11730	715	fadB multifunctional fatty acid oxidation complex	92.15
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	92.14
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	92.12
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	92.05
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	91.98
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	91.96
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	91.96
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	91.94
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	91.91
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	91.91
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	91.89
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	91.85
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	91.82
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	91.79
TIGR00384	220	dhsB succinate dehydrogenase and fumarate reductas	91.78
PRK05035	695	electron transport complex protein RnfC; Provision	91.73
PRK08640	249	sdhB succinate dehydrogenase iron-sulfur subunit;	91.66
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	91.64
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	91.62
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	91.57
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	91.56
PF13746	69	Fer4_18: 4Fe-4S dicluster domain	91.52
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	91.48
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	91.47
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	91.41
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	91.4
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	91.39
PLN02494	477	adenosylhomocysteinase	91.33
PRK12480	330	D-lactate dehydrogenase; Provisional	91.29
KOG2495|consensus	491		91.2
KOG0024|consensus	354		91.19
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	91.18

>PRK12831 putative oxidoreductase; Provisional

Probab=100.00  E-value=5.9e-44  Score=339.08  Aligned_cols=207  Identities=32%  Similarity=0.542  Sum_probs=177.9

Q ss_pred             ccccccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCC
Q psy16201         15 SCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCP   94 (240)
Q Consensus        15 ~~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~   94 (240)
                      +.++.++|+++ ..+++.+++++|++||+.|..|||+.+||+|+|||+|++++++|||.+|+++|+++||||++||||||
T Consensus        16 ~~~r~~~~~e~-~~~~~~~~~~~ea~rc~~c~~~~C~~~CP~~~~i~~~~~~~~~~~~~~a~~~~~~~np~p~~~grvC~   94 (464)
T PRK12831         16 PEVRATNFEEV-CLGYNEEEAVKEASRCLQCKKPKCVKGCPVSINIPGFISKLKEGDFEEAAKIIAKYNALPAVCGRVCP   94 (464)
T ss_pred             HHHHhcChhhh-cCCCCHHHHHHHHHhhcCCCCCchhhhCCCCCCHHHHHHHHHCCCHHHHHHHHHHhCCchhhhhccCC
Confidence            33477999998 78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEE
Q psy16201         95 TSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI  174 (240)
Q Consensus        95 ~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v  174 (240)
                      ++++||.+|+|+.. |+||+|+.||||+.|++.+.++...    .+.+.++++|+|||+||+||++|++|+++|+ +|+|
T Consensus        95 ~~~~Ce~~C~r~~~-~~~v~I~~l~r~~~~~~~~~~~~~~----~~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v  168 (464)
T PRK12831         95 QESQCEGKCVLGIK-GEPVAIGKLERFVADWARENGIDLS----ETEEKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTI  168 (464)
T ss_pred             CCCChHHHhcCCCC-CCCeehhHHHHHHHHHHHHcCCCCC----CCcCCCCCEEEEECcCHHHHHHHHHHHhCCC-eEEE
Confidence            98899999999854 7899999999999999887776421    1245678999999999999999999999999 8999


Q ss_pred             EecCCC-ccccc-c-----c---------hHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEeccc
Q psy16201        175 YEKNTY-DMVTN-V-----S---------PRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCK  228 (240)
Q Consensus       175 ~e~~~~-~~~~~-~-----~---------~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~  228 (240)
                      ||+.+. +|... .     +         .+.++..|+.|.++..++.+++++.+...-.||+||+++..
T Consensus       169 ~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~~v~~~~~~~~~~~d~viiAtGa  238 (464)
T PRK12831        169 FEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGKTVTIDELLEEEGFDAVFIGSGA  238 (464)
T ss_pred             EecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECCcCCHHHHHhccCCCEEEEeCCC
Confidence            998764 33211 0     1         12346789999999999888888877543259999999875

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=100.00  E-value=3.8e-43  Score=333.68  Aligned_cols=206  Identities=26%  Similarity=0.462  Sum_probs=176.9

Q ss_pred             cccccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCC
Q psy16201         16 CSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPT   95 (240)
Q Consensus        16 ~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~   95 (240)
                      .++..+|.|+ +.+++.+++++|++||++|..|||+.+||+|+|||+||+++++|||.+|+++|+++||||++||||||+
T Consensus        17 ~~~~~~~~e~-~~~~~~~~~~~~~~~c~~c~~~~C~~~CP~~~~~~~~~~~~~~g~~~~a~~~~~~~np~~~~~grvC~~   95 (467)
T TIGR01318        17 EERKTHFREI-YCPFDPGQAQYQADRCLYCGNPYCEWKCPVHNAIPQWLQLVQEGRIDEAAELSHQTNTLPEICGRVCPQ   95 (467)
T ss_pred             HHHhcChHhh-cCCCCHHHHHHHHHhcccCCCccccccCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCCchHhhcccCCC
Confidence            3367899998 889999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEE
Q psy16201         96 SDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIY  175 (240)
Q Consensus        96 ~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~  175 (240)
                      +++||++|+|+. .|+||+|+.||||+.|++...+|.+...   +.+.++++|+|||+||+||++|.+|+++|+ +|+||
T Consensus        96 ~~~Ce~~C~~~~-~~~~v~i~~l~r~~~~~~~~~~~~~~~~---~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~  170 (467)
T TIGR01318        96 DRLCEGACTLND-EFGAVTIGNLERYITDTALAMGWRPDLS---HVVPTGKRVAVIGAGPAGLACADILARAGV-QVVVF  170 (467)
T ss_pred             CCChHHhCcCCC-CCCCccHHHHHHHHHHHHHHhCCCCCCC---CcCCCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEE
Confidence            889999999985 4789999999999999987766543221   124578999999999999999999999999 79999


Q ss_pred             ecCCCc-cccc--------------cchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201        176 EKNTYD-MVTN--------------VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       176 e~~~~~-~~~~--------------~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      |+.+.. |...              ...+.++..|+.++++..++.++.++.+..  .||+||+++...
T Consensus       171 e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~~~~~--~~D~vilAtGa~  237 (467)
T TIGR01318       171 DRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDISLDDLLE--DYDAVFLGVGTY  237 (467)
T ss_pred             ecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccCHHHHHh--cCCEEEEEeCCC
Confidence            998753 2211              112345788999999999888888887764  499999997654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=100.00  E-value=7.2e-43  Score=343.02  Aligned_cols=207  Identities=27%  Similarity=0.480  Sum_probs=178.8

Q ss_pred             ccccccCcccccccCCChhhhHhhhcccCcCC-CCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccC
Q psy16201         15 SCSLVNNFDDIKHTTLSERGALKEASRCLKCA-DAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVC   93 (240)
Q Consensus        15 ~~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~-~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC   93 (240)
                      +..+..+|+++ +..++..+++.||+||++|+ .|||+.+||+|+|||+|++++++|||.+|+++|+++||||++|||||
T Consensus       184 ~~~R~~~f~Ev-~~~~~~~~~~~ea~rC~~C~~~~~C~~~CP~~~~i~~~~~~~~~g~~~~a~~~~~~~np~p~~~grvC  262 (639)
T PRK12809        184 ASERKTHFGEI-YCGLDPQQATYESDRCVYCAEKANCNWHCPLHNAIPDYIRLVQEGKIIEAAELCHQTSSLPEICGRVC  262 (639)
T ss_pred             HHHHhcCHHHh-hccCCHHHHHHHHHHHhCCCCCCcccccCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCCcchhhcccC
Confidence            34467889998 77999999999999999996 89999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEE
Q psy16201         94 PTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDIT  173 (240)
Q Consensus        94 ~~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~  173 (240)
                      |++++||.+|+|+.. |+||+|+.||||+.|++.+.+|.+...   +.+.++++|+|||+||+||++|+.|+++|+ +|+
T Consensus       263 p~~~~Ce~~C~~~~~-~~~v~i~~l~r~~~d~~~~~~~~~~~~---~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vt  337 (639)
T PRK12809        263 PQDRLCEGACTLKDH-SGAVSIGNLERYITDTALAMGWRPDVS---KVVPRSEKVAVIGAGPAGLGCADILARAGV-QVD  337 (639)
T ss_pred             CCCCChHHhccCCCc-CCCcChhHHHHHHHHHHHHhCCCCCCC---cccCCCCEEEEECcCHHHHHHHHHHHHcCC-cEE
Confidence            988899999999854 789999999999999998887743221   123568999999999999999999999999 799


Q ss_pred             EEecCCC-cccccc--------------chHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201        174 IYEKNTY-DMVTNV--------------SPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       174 v~e~~~~-~~~~~~--------------~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      |||+.+. ++++.+              ....+...|++|.++..++.+++++.+..  .||+||+++...
T Consensus       338 v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~~l~~--~~DaV~latGa~  406 (639)
T PRK12809        338 VFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTS--EYDAVFIGVGTY  406 (639)
T ss_pred             EEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCCHHHHHh--cCCEEEEeCCCC
Confidence            9999885 332221              12345788999999999999999988765  499999997553

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=100.00  E-value=1e-42  Score=342.54  Aligned_cols=206  Identities=28%  Similarity=0.480  Sum_probs=176.8

Q ss_pred             cccccCcccccccCCChhhhHhhhcccCcCC-CCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCC
Q psy16201         16 CSLVNNFDDIKHTTLSERGALKEASRCLKCA-DAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCP   94 (240)
Q Consensus        16 ~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~-~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~   94 (240)
                      .++.++|+|+ +.+|+.++++.|++||++|+ .|||+.+||+|+|||+|++++++|||.+|+++|+++||||++||||||
T Consensus       202 ~~r~~~f~e~-~~~~~~~~a~~~~~rc~~C~~~~~C~~~CP~~~~i~~~~~~~~~g~~~~A~~~~~~~np~p~~~grvCp  280 (654)
T PRK12769        202 EARKTGFDEI-YLPFRADQAQREASRCLKCGEHSICEWTCPLHNHIPQWIELVKAGNIDAAVELSHQTNSLPEITGRVCP  280 (654)
T ss_pred             HHHhcCHHhh-cCCCCHHHHHHHHHhhhcCCCCCCccccCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCCchhHhcccCC
Confidence            3377899998 77899999999999999996 899999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEE
Q psy16201         95 TSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI  174 (240)
Q Consensus        95 ~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v  174 (240)
                      ++++||.+|+|+.. |+||+|+.||||+.|++.+.++.+.. +  +.+.++++|+|||+||+||++|++|+++|+ +|+|
T Consensus       281 ~~~~Ce~~C~~~~~-~~~v~I~~l~r~~~d~~~~~~~~~~~-~--~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V  355 (654)
T PRK12769        281 QDRLCEGACTLRDE-YGAVTIGNIERYISDQALAKGWRPDL-S--QVTKSDKRVAIIGAGPAGLACADVLARNGV-AVTV  355 (654)
T ss_pred             CCCChHHhccCCCC-CCCeecCHHHHHHHHHHHHhCCCCCC-c--ccccCCCEEEEECCCHHHHHHHHHHHHCCC-eEEE
Confidence            88899999999854 78999999999999998887764321 1  123578999999999999999999999999 7999


Q ss_pred             EecCCC-ccccc-cc-------------hHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201        175 YEKNTY-DMVTN-VS-------------PRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       175 ~e~~~~-~~~~~-~~-------------~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      ||+.+. +|+.. .+             ...++..|++|.++..+|.+++++.+..  .||+||+++...
T Consensus       356 ~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~~~~~~--~~DavilAtGa~  423 (654)
T PRK12769        356 YDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISLESLLE--DYDAVFVGVGTY  423 (654)
T ss_pred             EecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCHHHHHh--cCCEEEEeCCCC
Confidence            999875 33221 11             2344678999999999999899888765  499999997643

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=100.00  E-value=4.1e-42  Score=351.27  Aligned_cols=206  Identities=25%  Similarity=0.452  Sum_probs=177.8

Q ss_pred             cccccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCC
Q psy16201         16 CSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPT   95 (240)
Q Consensus        16 ~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~   95 (240)
                      .++.++|+++ ...++.++++.|+.||++|..+||+.+||+|+|||+|+++++.|||.+|+++|+++||||++||||||+
T Consensus       308 ~er~~~f~ev-~~~~~~~~~~~ea~rC~~c~~~~C~~~CP~~~dip~~~~~i~~g~~~~A~~~i~~~np~p~~~grvCp~  386 (1006)
T PRK12775        308 VERARNFKEV-NLGYSLEDALQEAERCIQCAKPTCIAGCPVQIDIPVFIRHVVVRDFDGALEVIYEASIFPSICGRVCPQ  386 (1006)
T ss_pred             HHHhhCHHHH-hccCCHHHHHHHHHhccCCCCccccCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHhCChHHHhcCcCCC
Confidence            3467899998 789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEE
Q psy16201         96 SDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIY  175 (240)
Q Consensus        96 ~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~  175 (240)
                      +.+||.+|+|+.. |+||+|+.||||++|++.+.++..   |.  .+.++++|+|||+||+||++|++|+++|+ +|+||
T Consensus       387 ~~~Ce~~C~~~~~-~~pv~I~~ler~~~d~~~~~~~~~---~~--~~~~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~  459 (1006)
T PRK12775        387 ETQCEAQCIIAKK-HESVGIGRLERFVGDNARAKPVKP---PR--FSKKLGKVAICGSGPAGLAAAADLVKYGV-DVTVY  459 (1006)
T ss_pred             CCCHHHhCcCCCC-CCCeeecHHHHHHHHHHHHcCCCC---CC--CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEE
Confidence            8899999999854 789999999999999987766532   21  23468899999999999999999999999 89999


Q ss_pred             ecCCCc-ccc-ccc-------------hHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201        176 EKNTYD-MVT-NVS-------------PRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       176 e~~~~~-~~~-~~~-------------~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      |+.+.. +.. ..+             ...+...|++|++|..+|.+++++.+.....||+||++++..
T Consensus       460 E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~~~~~~~l~~~~~yDaViIATGa~  528 (1006)
T PRK12775        460 EALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGKTFTVPQLMNDKGFDAVFLGVGAG  528 (1006)
T ss_pred             ecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCCccCHHHHhhccCCCEEEEecCCC
Confidence            998753 321 111             134568899999999999999999886323599999998763

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=100.00  E-value=4.3e-42  Score=348.96  Aligned_cols=207  Identities=25%  Similarity=0.359  Sum_probs=172.3

Q ss_pred             cccccCccccccc-------CCChhh----hHhhhcccCcCCCCcc------------ccCCCCCCChHHHHHHHhcCCH
Q psy16201         16 CSLVNNFDDIKHT-------TLSERG----ALKEASRCLKCADAPC------------QKSCPTQIDIKSFITSISHKNY   72 (240)
Q Consensus        16 ~~~~~~f~~~~~~-------~~~~~~----~~~ea~rC~~c~~~~C------------~~aCP~~~di~~~i~~i~~g~~   72 (240)
                      .++..+|+++...       +++..+    ++.||+||++|++|||            +.+||+|+|||+|++++++|||
T Consensus       153 ~~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ea~RC~~C~~p~C~~~~~~~~~~~~~~~CP~~~~Ip~~i~~i~~g~~  232 (944)
T PRK12779        153 EERAVDFDLVNQGYLGYQSLGYSVREVELFVWLEVMRDKQCDDKPCELGVLVQGKAEPKGGCPVKIHIPEMLDLLGNGKH  232 (944)
T ss_pred             HHHhhChHhhccccccccccCCCHHHhhhhHHHHHHHhcCCCCCCCCCCcccccccCcCCCCcCCCcHHHHHHHHHCCCH
Confidence            3467899998432       488877    6699999999999999            5799999999999999999999


Q ss_pred             HHHHHHHHhhCCCCccccccCCCCCchhhhccccccCCCccccchhhHHHHHHHHhhCCC---cCC---CCCCCCCCCCC
Q psy16201         73 YGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGIS---QIR---PPDAKVDFPDT  146 (240)
Q Consensus        73 ~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~---~~~---~p~~~~~~~~~  146 (240)
                      .+|+++|+++||||++||||||++.+||++|+++   ++||+|+.||||+.|++.+.+..   .+.   .|.  .+.+++
T Consensus       233 ~~A~~~i~~~np~p~~~GrVCp~~~~CE~~C~~~---~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~--~~~~gk  307 (944)
T PRK12779        233 REALELIESCNPLPNVTGRVCPQELQCQGVCTHT---KRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPW--AAAVKP  307 (944)
T ss_pred             HHHHHHHHHhCChhHHhcCcCCCccCHHHhccCC---CcCcchhHHHHHHHHHHHhhchhhhhccccccccc--ccCCCC
Confidence            9999999999999999999999988999999986   46999999999999986543321   111   111  235689


Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-ccc-cccch-------------HHHhccCceEEeCCccCcccCHH
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DMV-TNVSP-------------RIVKGTTSRHLYGPEQGSFLNIE  211 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~~-~~~~~-------------~~~~~~gv~~~~~~~vg~~i~~e  211 (240)
                      +|+|||+||+||+||++|+++|| +|+|||+.+. ||+ ..-+|             +.++..|++|++|..+|++++++
T Consensus       308 kVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~~  386 (944)
T PRK12779        308 PIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATLE  386 (944)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeHH
Confidence            99999999999999999999999 8999999874 432 11122             24567899999999999999999


Q ss_pred             HHHhhcCCcEEEEecccc
Q psy16201        212 LISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       212 ~L~~~s~~d~V~~s~~~~  229 (240)
                      +|... .||+||+++...
T Consensus       387 ~l~~~-~yDAV~LAtGA~  403 (944)
T PRK12779        387 DLKAA-GFWKIFVGTGAG  403 (944)
T ss_pred             Hhccc-cCCEEEEeCCCC
Confidence            98753 599999998764

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=100.00  E-value=2.9e-41  Score=319.22  Aligned_cols=206  Identities=29%  Similarity=0.499  Sum_probs=175.2

Q ss_pred             cccccCcccccccCCChhhhHhhhcccCcCC--CCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccC
Q psy16201         16 CSLVNNFDDIKHTTLSERGALKEASRCLKCA--DAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVC   93 (240)
Q Consensus        16 ~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~--~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC   93 (240)
                      .++.++|.++ +..+++.+++.|++||++|.  .|||+.+||+|+|||+|++++++|||.+|+++++++||||++|||||
T Consensus         3 ~~~~~~~~e~-~~~~~~~~~~~ea~rc~~c~~~~~~C~~~CP~~~~i~~~~~~~~~g~~~~A~~~~~~~~p~p~~~grvC   81 (449)
T TIGR01316         3 EERSKLFQEA-ALGYTEQLALVEAQRCLNCKDATKPCIKGCPVHVPIPEFIAKIQEGDFKGAVDIIKTTSLLPAICGRVC   81 (449)
T ss_pred             HHhhcChHhh-ccCcCHHHHHHHHhhCcCccCCCCChhhhCCCCCCHHHHHHHHHCCCHHHHHHHHHHhCChhHHhccCC
Confidence            3467899998 88999999999999999999  99999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhhccccc---cCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCC
Q psy16201         94 PTSDLCMGGCNLYA---AEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYD  170 (240)
Q Consensus        94 ~~~~~Ce~~C~r~~---~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~  170 (240)
                      |++.+||.+|+|+.   ..|+||+|+.|+||+.|+....++....   .+.+.++++|+|||+|++||++|++|+++|+ 
T Consensus        82 ~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~-  157 (449)
T TIGR01316        82 PQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEP---EKAPSTHKKVAVIGAGPAGLACASELAKAGH-  157 (449)
T ss_pred             CCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCC---CCCCCCCCEEEEECcCHHHHHHHHHHHHCCC-
Confidence            99889999999864   1478999999999999988766543211   1134678999999999999999999999999 


Q ss_pred             cEEEEecCCCc-ccccc------c--------hHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEeccc
Q psy16201        171 DITIYEKNTYD-MVTNV------S--------PRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCK  228 (240)
Q Consensus       171 ~V~v~e~~~~~-~~~~~------~--------~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~  228 (240)
                      +|+|||+.+.. +...+      .        .+.+...|++|+++..++.+++++.+...  ||+||+++..
T Consensus       158 ~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~~~~~~--yd~viiAtGa  228 (449)
T TIGR01316       158 SVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGKTATLEELFSQ--YDAVFIGTGA  228 (449)
T ss_pred             cEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCCcCCHHHHHhh--CCEEEEeCCC
Confidence            79999998643 22110      1        12346789999999988888888877654  9999999875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=100.00  E-value=4.1e-40  Score=312.91  Aligned_cols=205  Identities=23%  Similarity=0.427  Sum_probs=174.3

Q ss_pred             ccccccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCC
Q psy16201         15 SCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCP   94 (240)
Q Consensus        15 ~~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~   94 (240)
                      +.+++++|+|+ ..+++.+++.+|++||++|..+||+.+||.|+|+|+||+++++|||.+|+++|+++||||++||||||
T Consensus        20 ~~~~~~~~~e~-~~~~~~~~~~~~a~rc~~c~~~~C~~~CP~~~~~~~~~~~~~~~~~~~a~~~~~~~~p~~~~~g~vC~   98 (471)
T PRK12810         20 VAERIKDFKEF-YEPFSEEQAKIQAARCMDCGIPFCHWGCPVHNYIPEWNDLVYRGRWEEAAERLHQTNNFPEFTGRVCP   98 (471)
T ss_pred             HHHHHhchHhh-hcccCHHHHHHHHHhccCCCCCcccccCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCChhHHhcCcCC
Confidence            34477999998 77999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEE
Q psy16201         95 TSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI  174 (240)
Q Consensus        95 ~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v  174 (240)
                      +  +||.+|+|+. .|+||+|+.||||+.|+.....+..   |..+.+..+++|+|||+|++||++|.+|+++|+ +|+|
T Consensus        99 ~--~Ce~~C~~~~-~~~~v~i~~l~r~~~~~~~~~~~~~---~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~v  171 (471)
T PRK12810         99 A--PCEGACTLNI-NFGPVTIKNIERYIIDKAFEEGWVK---PDPPVKRTGKKVAVVGSGPAGLAAADQLARAGH-KVTV  171 (471)
T ss_pred             c--hhHHhccCCC-CCCCccHHHHHHHHHHHHHHcCCCC---CCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCC-cEEE
Confidence            9  8999999986 4789999999999999887665411   111234678899999999999999999999999 7999


Q ss_pred             EecCCCc-cccc--------------cchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201        175 YEKNTYD-MVTN--------------VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       175 ~e~~~~~-~~~~--------------~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      ||+.+.. +...              ...+.+...|+++.++..++.+++.+.+...  ||+||+++...
T Consensus       172 ie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~~~~~~~--~d~vvlAtGa~  239 (471)
T PRK12810        172 FERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDITAEELLAE--YDAVFLGTGAY  239 (471)
T ss_pred             EecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcCCHHHHHhh--CCEEEEecCCC
Confidence            9998753 2211              0123456789999999988877777776654  99999997654

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=8.5e-40  Score=326.34  Aligned_cols=205  Identities=29%  Similarity=0.536  Sum_probs=175.1

Q ss_pred             ccccC-cccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCC
Q psy16201         17 SLVNN-FDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPT   95 (240)
Q Consensus        17 ~~~~~-f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~   95 (240)
                      ++..+ |+++ ...++.++++.||+||++|+.++|+.+||.++|||+|++++++|||.+|+++|+++||||++||||||+
T Consensus       306 ~r~~~~f~ev-~~~~~~~~a~~ea~rC~~c~~~~C~~~Cp~~~~i~~~~~~~~~g~~~~a~~~~~~~~p~p~~~grvC~~  384 (752)
T PRK12778        306 YRAHNRFEEV-NLGLTKEQAMTEAKRCLDCKNPGCVEGCPVGIDIPRFIKNIERGNFLEAAKILKETSALPAVCGRVCPQ  384 (752)
T ss_pred             HHhcCChhhc-cCCCCHHHHHHHHHHhhcCCCCcccccCcCCCCHHHHHHHHHCCCHHHHHHHHHhhCCchhHhcCcCCC
Confidence            36677 9998 779999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhccccccCC-CccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEE
Q psy16201         96 SDLCMGGCNLYAAEE-GPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI  174 (240)
Q Consensus        96 ~~~Ce~~C~r~~~~~-~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v  174 (240)
                      +.+||++|+|+.. + .||+|+.||||+.|+..+..+...  |.. .+.++++|+|||+||+||++|.+|+++|+ +|+|
T Consensus       385 ~~~Ce~~c~~~~~-~~~~v~i~~l~r~~~d~~~~~~~~~~--~~~-~~~~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v  459 (752)
T PRK12778        385 EKQCESKCIHGKM-GEEAVAIGYLERFVADYERESGNISV--PEV-AEKNGKKVAVIGSGPAGLSFAGDLAKRGY-DVTV  459 (752)
T ss_pred             cCchHHhcccCCC-CCCCcCHHHHHHHHHHHHHHhCCCCC--CCC-CCCCCCEEEEECcCHHHHHHHHHHHHCCC-eEEE
Confidence            8899999999854 5 899999999999998765543221  211 34678999999999999999999999999 8999


Q ss_pred             EecCCC-cccccc-c-----h--------HHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEeccc
Q psy16201        175 YEKNTY-DMVTNV-S-----P--------RIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCK  228 (240)
Q Consensus       175 ~e~~~~-~~~~~~-~-----~--------~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~  228 (240)
                      ||+.+. +|...+ +     +        +.+...|++|.++..+|++++++.+... .||+||+++..
T Consensus       460 ~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~~l~~~-~ydavvlAtGa  527 (752)
T PRK12778        460 FEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGKTITIEELEEE-GFKGIFIASGA  527 (752)
T ss_pred             EecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCcCCHHHHhhc-CCCEEEEeCCC
Confidence            999764 332211 1     1        2346789999999999999999988543 59999999875

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=100.00  E-value=4e-39  Score=307.53  Aligned_cols=203  Identities=22%  Similarity=0.417  Sum_probs=172.7

Q ss_pred             ccccCcccccccCCChhhhHhhhcccCcCCCCcccc--CCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCC
Q psy16201         17 SLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQK--SCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCP   94 (240)
Q Consensus        17 ~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~--aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~   94 (240)
                      ++.++|.++ +.+++.+++.+|++||++|..|||+.  +||+|+|||+|++++.+|||.+|+++|+++||||.+||||||
T Consensus        20 ~~~~~~~~~-~~~~~~~~~~~~~~rc~~c~~~~C~~~~~CP~~~~i~~~~~~~~~g~~~~a~~~~~~~~p~p~~~grvC~   98 (485)
T TIGR01317        20 TRLKDWKEF-TNPFDKESAKYQAARCMDCGTPFCHNDSGCPLNNLIPEFNDLVFRGRWKEALDRLHATNNFPEFTGRVCP   98 (485)
T ss_pred             HHhhCHHHH-hCCCCHHHHHHHHHhccCCCCCCCCCCCCCCCCCcHHHHHHHHHCCCHHHHHHHHHhhCCchhHHhCcCC
Confidence            466899998 88999999999999999999999999  999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEE
Q psy16201         95 TSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI  174 (240)
Q Consensus        95 ~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v  174 (240)
                      +  +||.+|+|+.. ++||+|+.||||+.|+..+..+.....   +.+..+++|+|||+|++|+++|.+|+++|+ +|+|
T Consensus        99 ~--~Ce~~C~~~~~-~~~v~I~~l~r~~~~~~~~~~~~~~~~---~~~~~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v  171 (485)
T TIGR01317        99 A--PCEGACTLGIS-EDPVGIKSIERIIIDKGFQEGWVQPRP---PSKRTGKKVAVVGSGPAGLAAADQLNRAGH-TVTV  171 (485)
T ss_pred             h--hhHHhccCCCC-CCCcchhHHHHHHHHHHHHcCCCCCCC---CcCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEE
Confidence            9  99999999854 789999999999999877666533221   133567899999999999999999999999 7999


Q ss_pred             EecCCCcc--ccc----------c---chHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201        175 YEKNTYDM--VTN----------V---SPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       175 ~e~~~~~~--~~~----------~---~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      ||+.+..+  +..          .   ..+.++..|+++.++..++.+++.+.+...  ||+||+++...
T Consensus       172 ~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~~~~~~--~d~VilAtGa~  239 (485)
T TIGR01317       172 FEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVDISADELKEQ--FDAVVLAGGAT  239 (485)
T ss_pred             EecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCccCHHHHHhh--CCEEEEccCCC
Confidence            99887532  110          0   113446789999999988877777766544  99999997655

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=100.00  E-value=2.1e-38  Score=299.87  Aligned_cols=205  Identities=33%  Similarity=0.582  Sum_probs=173.0

Q ss_pred             cccccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCC
Q psy16201         16 CSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPT   95 (240)
Q Consensus        16 ~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~   95 (240)
                      .+++.+|.++ +.++++.+++.|++||++|..+||+.+||.|+|||+|++++++|||.+|+++++++||||.+||||||+
T Consensus        17 ~~r~~~~~e~-~~~~~~~~~~~e~~rc~~c~~~~c~~~cp~~~~~~~~~~~~~~~~~~~a~~~~~~~~p~~~~~g~vc~~   95 (457)
T PRK11749         17 EERAQNFDEV-APGYTPEEAIEEASRCLQCKDAPCVKACPVSIDIPEFIRLIAEGNLKGAAETILETNPLPAVCGRVCPQ   95 (457)
T ss_pred             HHHhcChHhh-cCCCCHHHHHHHHHHhhCCCCCcccccCCCcCCHHHHHHHHHCCCHHHHHHHHHHhCCchhhhcCcCCC
Confidence            3477899998 789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEE
Q psy16201         96 SDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIY  175 (240)
Q Consensus        96 ~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~  175 (240)
                      +..|+++|+|+.. +.||+|+.|++|+.++.....+..+.    +.+..+++|+|||+||+||++|..|+++|+ +|+||
T Consensus        96 ~~~C~~~C~~~~~-~~~v~i~~l~~~~~~~~~~~~~~~~~----~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~li  169 (457)
T PRK11749         96 ERLCEGACVRGKK-GEPVAIGRLERYITDWAMETGWVLFK----RAPKTGKKVAVIGAGPAGLTAAHRLARKGY-DVTIF  169 (457)
T ss_pred             ccCHHHHhcCCCC-CCCcchHHHHHHHHHHHHhcCCCCCC----CCccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEE
Confidence            4449999998754 68999999999999987765543211    134668899999999999999999999999 89999


Q ss_pred             ecCCCc-cccc--------------cchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201        176 EKNTYD-MVTN--------------VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       176 e~~~~~-~~~~--------------~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      |+.+.. +...              .....+...|++|.++..++..++++.+..  .||.|++++...
T Consensus       170 e~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~~~~~--~~d~vvlAtGa~  236 (457)
T PRK11749        170 EARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGRDITLDELRA--GYDAVFIGTGAG  236 (457)
T ss_pred             ccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECCccCHHHHHh--hCCEEEEccCCC
Confidence            998753 2111              111344678999999998887778776654  499999997653

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=3.9e-37  Score=291.40  Aligned_cols=203  Identities=30%  Similarity=0.457  Sum_probs=178.8

Q ss_pred             ccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCc
Q psy16201         19 VNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDL   98 (240)
Q Consensus        19 ~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~   98 (240)
                      .++|.+. ..+++..++..+++||++|++ +|+.+||++++||.|+.++++|++.+|++.|.++|+||++|||+||++..
T Consensus         3 ~~~~~e~-~~~~~~~~a~~~a~rCl~C~~-~C~~~cp~~~~IP~~~~lv~~g~~~~a~~~i~~tn~~p~~~gRvcp~~~~   80 (457)
T COG0493           3 PKDFREA-VVGSGPEAAIYEAARCLDCGD-PCITGCPVHNDIPEPIGLVREGVDHEAIKLIHKTNNLPAITGRVCPLGNL   80 (457)
T ss_pred             cccceee-ecCCCHHHHHHHHHHHHcCCC-ccccCCcCCCcCCCHHHHHhcCCcHHHHHHHHHhCCCccccCccCCCCCc
Confidence            3578887 789999999999999999999 99999999999999999999999999999999999999999999999667


Q ss_pred             hhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201         99 CMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus        99 Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ||++|+++. .+.||+|+.|++|+.|.++..+|.+..   .+...++++|+|||+||+||++|..|++.|| .|+|||+.
T Consensus        81 ceg~cv~~~-~~~~v~i~~le~~i~d~~~~~g~i~~~---~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~-~Vtv~e~~  155 (457)
T COG0493          81 CEGACVLGI-EELPVNIGALERAIGDKADREGWIPGE---LPGSRTGKKVAVIGAGPAGLAAADDLSRAGH-DVTVFERV  155 (457)
T ss_pred             eeeeeeecc-CCCchhhhhHHHHHhhHHHHhCCCCCC---CCCCCCCCEEEEECCCchHhhhHHHHHhCCC-eEEEeCCc
Confidence            999999874 478999999999999999988875443   2235678999999999999999999999999 89999999


Q ss_pred             CCcc--ccccch-------------HHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccch
Q psy16201        179 TYDM--VTNVSP-------------RIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVL  230 (240)
Q Consensus       179 ~~~~--~~~~~~-------------~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~~  230 (240)
                      +..+  +..-+|             ..++..|++|.+|..+|+++++++|.+.  ||+||+.+....
T Consensus       156 ~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~~L~~e--~Dav~l~~G~~~  220 (457)
T COG0493         156 ALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLEELLKE--YDAVFLATGAGK  220 (457)
T ss_pred             CCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHHHHHHh--hCEEEEeccccC
Confidence            8644  222122             3557889999999999999999999986  899999976553

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=100.00  E-value=8.5e-37  Score=308.98  Aligned_cols=199  Identities=26%  Similarity=0.405  Sum_probs=160.5

Q ss_pred             cCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCch
Q psy16201         20 NNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLC   99 (240)
Q Consensus        20 ~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~C   99 (240)
                      ++|++.+.+  .+...+.+..+|++|..|||+.+||+|+|||+|++++++|+|++|+++|+++||||++|||||||  +|
T Consensus       421 ~~~~~~~~~--~~~~~~~~~~p~~~c~~aPC~~~CP~~~dIp~yi~li~~g~~~~A~~~I~~~nPlP~icGrVCph--~C  496 (1019)
T PRK09853        421 EYTQKHWKP--VESRKVAEDLPLTDCYVAPCVTACPINQDIPEYIRLVGEGRYAEALELIYQRNALPAITGHICDH--QC  496 (1019)
T ss_pred             hhhhhhhhc--cccccccccCCccCCCCCccccCCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCChhhHhhCcCCc--hh
Confidence            556655333  25556778889999999999999999999999999999999999999999999999999999999  99


Q ss_pred             hhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        100 MGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       100 e~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      |.+|+|+.. |+||+|+.||||++|++.......+..|.  .+.++++|+|||+||+||++|++|+++|+ +|+|||+.+
T Consensus       497 e~~C~R~~~-d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~--~~~tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~  572 (1019)
T PRK09853        497 QYNCTRLDY-DEAVNIRELKKVALEKGWDEYKQRWHKPA--GIGSRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE  572 (1019)
T ss_pred             HHHhcCCCC-CCCeeccHHHHHHHhhHHHhcccccCCCC--ccCCCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence            999999864 78999999999999987654332221121  24678999999999999999999999999 899999986


Q ss_pred             C-cccc-ccch-------------HHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201        180 Y-DMVT-NVSP-------------RIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       180 ~-~~~~-~~~~-------------~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      . +|.. ..+|             +.+...|++|.+|..+  +++++.+... +||+||++++..
T Consensus       573 ~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V--di~le~L~~~-gYDaVILATGA~  634 (1019)
T PRK09853        573 NAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP--DLTVEQLKNE-GYDYVVVAIGAD  634 (1019)
T ss_pred             ccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee--EEEhhhheec-cCCEEEECcCCC
Confidence            4 3321 1111             2345779999999876  4667766543 599999997664

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=100.00  E-value=5.3e-36  Score=304.03  Aligned_cols=189  Identities=29%  Similarity=0.483  Sum_probs=152.7

Q ss_pred             hhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhccccccCCC
Q psy16201         32 ERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEG  111 (240)
Q Consensus        32 ~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~~~~~~  111 (240)
                      +...+.+..++.+|..+||+.+||+|+|||+||+++++|||++|+++|+++||||++|||||||  +||.+|+|+.. |+
T Consensus       429 ~~~~~~~~~p~~~c~~aPC~~~CP~~~dIp~yi~~i~~g~~~~A~~vi~~~nPlp~icGrVC~h--~Ce~~C~R~~~-d~  505 (1012)
T TIGR03315       429 ESRKLRKTLPLTDCYVAPCTTGCPINQDIPEYIRLVGEKRYLEALEVIYDKNPLPAITGTICDH--QCQYKCTRLDY-DE  505 (1012)
T ss_pred             cccchhccCccccCCCCccccCCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCChhhHhhCcCCc--chHHHhcCCCC-CC
Confidence            4455667788899999999999999999999999999999999999999999999999999999  99999999754 79


Q ss_pred             ccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc-c-ccccch-
Q psy16201        112 PINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD-M-VTNVSP-  188 (240)
Q Consensus       112 pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~-~-~~~~~~-  188 (240)
                      ||+|+.||||++|++.......+..|.  ++.++++|+|||+||+||+||++|+++|+ +|+|||+.+.. | +...+| 
T Consensus       506 pV~I~~Lkr~a~d~~~~~~~~~~~~~~--~~~~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~~lGG~l~~~IP~  582 (1012)
T TIGR03315       506 SVNIREMKKVAAEKGYDEYKTRWHKPQ--GKSSAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEKPGGVVKNIIPE  582 (1012)
T ss_pred             CCcccHHHHHHHhhHHHhcCccCCCCC--CCCCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEecccccCceeeecccc
Confidence            999999999999987654322221111  23567899999999999999999999999 89999998753 2 222111 


Q ss_pred             ------------HHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201        189 ------------RIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       189 ------------~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                                  +.+...|++|++|..  .+++++.+... +||+|+++++..
T Consensus       583 ~rlp~e~l~~~ie~l~~~GVe~~~g~~--~d~~ve~l~~~-gYDaVIIATGA~  632 (1012)
T TIGR03315       583 FRISAESIQKDIELVKFHGVEFKYGCS--PDLTVAELKNQ-GYKYVILAIGAW  632 (1012)
T ss_pred             cCCCHHHHHHHHHHHHhcCcEEEEecc--cceEhhhhhcc-cccEEEECCCCC
Confidence                        234567999998853  34566766543 699999997654

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=100.00  E-value=2.4e-35  Score=285.83  Aligned_cols=212  Identities=23%  Similarity=0.349  Sum_probs=168.9

Q ss_pred             ccccccccccccccccc---cCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHH
Q psy16201          3 EQSSLAGINVFTSCSLV---NNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAI   79 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~---~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i   79 (240)
                      .+.|+|+++++.+.+..   ++|.+.+.     .....-...+.++..|||+.+||+|+|||+|+++|++|||.+|++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~C~~~CP~~~~i~~~~~~~~~g~~~~a~~~~   78 (564)
T PRK12771          4 TDNSDCAIGYEAAFDALTLPDGFSDEIA-----TGPWRHKCPVYVDQTPPCNAACPAGEDIRGWLALVRGGDYEYAWRRL   78 (564)
T ss_pred             cccccCccccccccccccccccchHhhh-----ccccccccccccCCCCccccCCCCCCcHHHHHHHHHCCCHHHHHHHH
Confidence            47899999999998844   44444322     11112223346789999999999999999999999999999999999


Q ss_pred             HhhCCCCccccccCCCCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHH
Q psy16201         80 FSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLS  159 (240)
Q Consensus        80 ~~~np~p~~cgrvC~~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~  159 (240)
                      +++||||++||||||+  +||.+|+|+. .+.||+|+.++||+.|+....++...    .+....+++|+|||+||+||+
T Consensus        79 ~~~np~~~~~grvc~~--~ce~~C~r~~-~~~~v~i~~l~r~~~~~~~~~~~~~~----~~~~~~g~~V~VIGaGpaGL~  151 (564)
T PRK12771         79 TKDNPFPAVMGRVCYH--PCESGCNRGQ-VDDAVGINAVERFLGDYAIANGWKFP----APAPDTGKRVAVIGGGPAGLS  151 (564)
T ss_pred             HHhCCcchHhhCcCCc--hhHHhccCCC-CCCCcCHHHHHHHHHHHHHHcCCCCC----CCCCCCCCEEEEECCCHHHHH
Confidence            9999999999999999  9999999985 47899999999999998877665321    113467899999999999999


Q ss_pred             HHHHHHHcCCCcEEEEecCCCc-cccc-----------cc---hHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEE
Q psy16201        160 CATFLSRMGYDDITIYEKNTYD-MVTN-----------VS---PRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYY  224 (240)
Q Consensus       160 ~a~~L~~~G~~~V~v~e~~~~~-~~~~-----------~~---~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~  224 (240)
                      +|+.|+++|+ +|+|||+.+.. +...           ..   .+.+...|+.+.++..+|.++..+.+...  ||+||+
T Consensus       152 aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~~~~~~--~D~Vi~  228 (564)
T PRK12771        152 AAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITLEQLEGE--FDAVFV  228 (564)
T ss_pred             HHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCHHHHHhh--CCEEEE
Confidence            9999999999 79999988753 2211           01   12346789999999888777777776654  999999


Q ss_pred             ecccc
Q psy16201        225 SNCKV  229 (240)
Q Consensus       225 s~~~~  229 (240)
                      ++...
T Consensus       229 AtG~~  233 (564)
T PRK12771        229 AIGAQ  233 (564)
T ss_pred             eeCCC
Confidence            97543

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=100.00  E-value=3.1e-34  Score=282.54  Aligned_cols=181  Identities=24%  Similarity=0.450  Sum_probs=150.8

Q ss_pred             hcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhccccccCCCccccchh
Q psy16201         39 ASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGL  118 (240)
Q Consensus        39 a~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~~~~~~pV~I~~l  118 (240)
                      +.+|.+|. +||+.+||+|+|||+|++++++|||.+|+++|+++||||++||||||+  +||++|+|+.. ++||.|..|
T Consensus        94 ~~~c~~C~-~pC~~~CP~~~~~~~~~~~~~~g~~~~a~~~~~~~~p~p~~~grvC~~--~Ce~~C~r~~~-~~~v~i~~l  169 (652)
T PRK12814         94 EQHCGDCL-GPCELACPAGCNIPGFIAAIARGDDREAIRIIKETIPLPGILGRICPA--PCEEACRRHGV-DEPVSICAL  169 (652)
T ss_pred             hhcccccC-CccccCCCCCCcHHHHHHHHHCCCHHHHHHHHHhhCCccceeeCCcCc--hhhHHHcCCCC-CCCcchhHH
Confidence            45799997 789999999999999999999999999999999999999999999999  99999999754 789999999


Q ss_pred             hHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-cccccc-c---------
Q psy16201        119 QQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DMVTNV-S---------  187 (240)
Q Consensus       119 ~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~~~~~-~---------  187 (240)
                      ++|+.++.....+..  .|.. .+..+++|+|||+||+||++|++|+++|+ +|+|||+.+. +|.+.+ +         
T Consensus       170 ~r~~~~~~~~~~~~~--~~~~-~~~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~~~GG~l~~gip~~~~~~~~  245 (652)
T PRK12814        170 KRYAADRDMESAERY--IPER-APKSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANEQAGGMMRYGIPRFRLPESV  245 (652)
T ss_pred             HHHHHHHHHhcCccc--CCCC-CCCCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCceeeecCCCCCCCHHH
Confidence            999999876543321  1211 34567899999999999999999999999 7999999875 332221 1         


Q ss_pred             ----hHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201        188 ----PRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       188 ----~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                          ...+...|+++.++..++.+++++.+...  ||+||+++...
T Consensus       246 ~~~~~~~l~~~Gv~i~~~~~v~~dv~~~~~~~~--~DaVilAtGa~  289 (652)
T PRK12814        246 IDADIAPLRAMGAEFRFNTVFGRDITLEELQKE--FDAVLLAVGAQ  289 (652)
T ss_pred             HHHHHHHHHHcCCEEEeCCcccCccCHHHHHhh--cCEEEEEcCCC
Confidence                13446789999999988888888877654  99999997654

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=100.00  E-value=6.8e-34  Score=285.65  Aligned_cols=203  Identities=19%  Similarity=0.270  Sum_probs=163.0

Q ss_pred             cccCcccccccCCChhhhHhhhcccCcCCC------------------------------------------CccccCCC
Q psy16201         18 LVNNFDDIKHTTLSERGALKEASRCLKCAD------------------------------------------APCQKSCP   55 (240)
Q Consensus        18 ~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~------------------------------------------~~C~~aCP   55 (240)
                      ..+.|+.+ +..++.++++.|++.|+.|+.                                          +||+.+||
T Consensus       207 ~r~gf~lt-d~~~~~~~~~~~~~yci~ch~~~~d~cskg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~c~~~CP  285 (1028)
T PRK06567        207 ERVDFDYT-DSFLNLDEALNHSHYCIYCHKQDKDSCSKGLLQPQNRHCEERSDVAISGDLTRLPRSLQSLAMTDLKQGCP  285 (1028)
T ss_pred             hcCCcccc-CCCCCHHHHhhhCceEEEeecCCCCccccCCcccCCCccccccccccccccccccccccccCCCccccCCC
Confidence            56789987 889999999999999999962                                          18999999


Q ss_pred             CCCChHHHHHHHhcCCHHHHHHHHHhhCCCCcccc-ccCCCCCchhhhccccccCCCccccchhhHHHHHHHH-------
Q psy16201         56 TQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCG-MVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFK-------  127 (240)
Q Consensus        56 ~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cg-rvC~~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~-------  127 (240)
                      +|+|||+|+..+++|++.+|+++|+++||||++|| ||||   +||++|+|+  .|+||+|+.||||+.|...       
T Consensus       286 a~~~Ip~~~~~~~~g~~~~Al~ii~~~NP~p~~~G~RVCp---~CE~aC~r~--~dePV~I~~ler~i~d~~~~~~~~~e  360 (1028)
T PRK06567        286 LKQKISEMNYVKAQGFNLSALAIIVIDNPMVAATGHRICN---DCSKACIYQ--KQDPVNIPLIESNILEETLKLPYGLE  360 (1028)
T ss_pred             CCCcchHHHHHHHCCCHHHHHHHHHHhCCChHhhCCccCc---chHHHhcCC--CCCCeehhHHHHHHhhhhhhhccccc
Confidence            99999999999999999999999999999999999 9999   599999997  4789999999999998532       


Q ss_pred             ----hhCCCcC--CCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC----------------------
Q psy16201        128 ----DMGISQI--RPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT----------------------  179 (240)
Q Consensus       128 ----~~~~~~~--~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~----------------------  179 (240)
                          ..+|.+.  ..| .|.+.++++|+|||+||+||++|++|+++|| +|+|||+..                      
T Consensus       361 ~y~~~~~~~~~~~~~~-~~~~~tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L  438 (1028)
T PRK06567        361 IYLLLTRWNPLNIYAP-LPKEPTNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGLKITLLPFDVHKPIKFWHEYKNLL  438 (1028)
T ss_pred             ccccccccccccccCC-CCCCCCCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccccccccccccccccchhhhhccch
Confidence                1233221  112 1245689999999999999999999999999 799999853                      


Q ss_pred             -------Ccccccc-ch-----------HHHhcc--CceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201        180 -------YDMVTNV-SP-----------RIVKGT--TSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       180 -------~~~~~~~-~~-----------~~~~~~--gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                             .||+..+ ++           +.+...  +++|..|+.+|.+++++++... +||+||++++..
T Consensus       439 ~er~p~~~GG~~~yGIp~R~~k~~l~~i~~il~~g~~v~~~~gv~lG~dit~edl~~~-gyDAV~IATGA~  508 (1028)
T PRK06567        439 SERMPRGFGGVAEYGITVRWDKNNLDILRLILERNNNFKYYDGVALDFNITKEQAFDL-GFDHIAFCIGAG  508 (1028)
T ss_pred             hhhccccCCcccccCccccchHHHHHHHHHHHhcCCceEEECCeEECccCCHHHHhhc-CCCEEEEeCCCC
Confidence                   1221110 00           111223  4666669999999999998643 699999998763

>KOG0399|consensus

Probab=100.00  E-value=1e-33  Score=280.74  Aligned_cols=203  Identities=21%  Similarity=0.389  Sum_probs=177.8

Q ss_pred             ccccCcccccccCCChhhhHhhhcccCcCCCCcccc--CCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCC
Q psy16201         17 SLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQK--SCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCP   94 (240)
Q Consensus        17 ~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~--aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~   94 (240)
                      .+.++|+|++. ......+..++.||++|++|+|+.  +||++..||.|..++.+.+|++|+..++++|-||+.+|||||
T Consensus      1662 ~r~ndw~e~~~-~~~~~~~~~qtarcmdcgtpfc~~~~gcpl~n~ip~~nelvfk~~wk~al~~ll~tnnfpeftgrvcp 1740 (2142)
T KOG0399|consen 1662 ERLNDWKEVYD-FEAVSNLREQTARCMDCGTPFCQSDSGCPLGNIIPKFNELVFKNQWKEALEQLLETNNFPEFTGRVCP 1740 (2142)
T ss_pred             hhcccHHHhhh-hccchhhHHHhhHHhcCCCccccCCCCCccccccccHHHHHHHHHHHHHHHHHHhhCCCccccCccCC
Confidence            36689999854 445677889999999999999996  699999999999999999999999999999999999999999


Q ss_pred             CCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEE
Q psy16201         95 TSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITI  174 (240)
Q Consensus        95 ~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v  174 (240)
                      +  |||++|+.+. .+.||.|+.+++.+.|++++.+|..   |..|+..++++|+|||+||+||+||-+|.+.|| .|+|
T Consensus      1741 a--pcegactlgi-ie~pv~iksie~aiid~af~egwm~---p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh-~v~v 1813 (2142)
T KOG0399|consen 1741 A--PCEGACTLGI-IEPPVGIKSIECAIIDKAFEEGWMK---PCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGH-TVTV 1813 (2142)
T ss_pred             C--CcCcceeeec-ccCCccccchhhHHHHHHHHhcCCc---cCCcccccCcEEEEEccCchhhhHHHHHhhcCc-EEEE
Confidence            9  9999999875 4789999999999999999999964   433456889999999999999999999999999 7999


Q ss_pred             EecCCCcc--ccccch-------------HHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201        175 YEKNTYDM--VTNVSP-------------RIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       175 ~e~~~~~~--~~~~~~-------------~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      |||.++.|  +..-+|             +.+...|++|..|+++|+.+++++|...  +|+|+++....
T Consensus      1814 yer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~vs~d~l~~~--~daiv~a~gst 1881 (2142)
T KOG0399|consen 1814 YERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVSLDELKKE--NDAIVLATGST 1881 (2142)
T ss_pred             EEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccccHHHHhhc--cCeEEEEeCCC
Confidence            99998743  111111             3457899999999999999999999986  99999996544

>PRK13984 putative oxidoreductase; Provisional

Probab=100.00  E-value=2e-32  Score=267.24  Aligned_cols=201  Identities=27%  Similarity=0.507  Sum_probs=167.4

Q ss_pred             ccccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCC
Q psy16201         17 SLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTS   96 (240)
Q Consensus        17 ~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~   96 (240)
                      .+...|.++ ...++..++.+++.+|+.|+  +|+.+||.++++++|++++++|++.+|++.+++.||||++||||||+ 
T Consensus       163 ~r~~~~~~~-~~g~~~~~~~~~~~~C~~Cg--~C~~~CP~~~~i~~~~~~i~~~~~~~a~~~~~~~np~~~~~g~vC~~-  238 (604)
T PRK13984        163 ERVKSFIEI-VKGYSKEQAMQEAARCVECG--ICTDTCPAHMDIPQYIKAIYKDDLEEGLRWLYKTNPLSMVCGRVCTH-  238 (604)
T ss_pred             HHHhchhhh-ccCCCHHHHHHhhhhhcCCC--cccccCCCCCCHHHHHHHHHcCCHHHHHHHHHhcCCccchhhCcCCc-
Confidence            366778887 66778888999999999998  69999999999999999999999999999999999999999999999 


Q ss_pred             CchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEe
Q psy16201         97 DLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYE  176 (240)
Q Consensus        97 ~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e  176 (240)
                       +||++|+|+. .++||.|+.||||+.|+.....+.....+  +.+.++++|+|||+|++|+++|..|+++|+ +|+|||
T Consensus       239 -~Ce~~C~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie  313 (604)
T PRK13984        239 -KCETVCSIGH-RGEPIAIRWLKRYIVDNVPVEKYSEILDD--EPEKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYE  313 (604)
T ss_pred             -hHHHhhcccC-CCCCeEeCcHHHHHHhHHHHcCcccccCC--CcccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEe
Confidence             9999999975 47899999999999998664433211111  134578899999999999999999999999 899999


Q ss_pred             cCCCc-cccc--------------cchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEeccc
Q psy16201        177 KNTYD-MVTN--------------VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCK  228 (240)
Q Consensus       177 ~~~~~-~~~~--------------~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~  228 (240)
                      +.+.. +...              .....++..|+.++++..++.+++.+.+..  .||+||++++.
T Consensus       314 ~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~~~~~~--~yD~vilAtGa  378 (604)
T PRK13984        314 SLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKDIPLEELRE--KHDAVFLSTGF  378 (604)
T ss_pred             cCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCcCCHHHHHh--cCCEEEEEcCc
Confidence            88753 2111              012345778999999999988888887765  49999999764

>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B

Probab=100.00  E-value=7.5e-34  Score=221.69  Aligned_cols=110  Identities=37%  Similarity=0.755  Sum_probs=79.4

Q ss_pred             ccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCc
Q psy16201         19 VNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDL   98 (240)
Q Consensus        19 ~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~   98 (240)
                      .++|+++ ...++..+++.|++||++|.+|||+.+||+|+|||+||+++++|||++|+++++++||||++||||||++.+
T Consensus         2 ~~~f~e~-~~~~~~~~~~~ea~rC~~c~~~pC~~aCP~~~dip~~i~~i~~g~~~~A~~~i~~~np~p~vcGrvCp~p~~   80 (111)
T PF14691_consen    2 IKNFKEV-EKGYSEEEAIEEASRCLQCEDPPCQAACPAHIDIPEYIRLIREGNFKEAYELIREDNPFPAVCGRVCPHPKQ   80 (111)
T ss_dssp             ---------SS--HCCHHHHHHHS---TT-HHHHTSTT---HHHHHHHHHCT-HHHHHHHHHHH-TTHHHHHHH--GGGS
T ss_pred             CcCHHHH-hcCcCHHHHHHHHhhccCCCCCCcccCCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCCCcccccCCCCCcch
Confidence            5899998 779999999999999999999999999999999999999999999999999999999999999999999334


Q ss_pred             hhhhccccccCCCccccchhhHHHHHHHHhhCC
Q psy16201         99 CMGGCNLYAAEEGPINIGGLQQFATEVFKDMGI  131 (240)
Q Consensus        99 Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~  131 (240)
                      ||++|+|+ .. +||+|+.|+||++|++.+.+|
T Consensus        81 Ce~~C~r~-~~-~pV~I~~l~r~~~d~~~~~~~  111 (111)
T PF14691_consen   81 CESACRRG-KG-EPVAIRALERFIADYALEEGW  111 (111)
T ss_dssp             GGGG-GGG-ST--S--HHHHHHHHHHHHHHHT-
T ss_pred             HHHHccCC-CC-CCCcHHHHHHHHHHHHHHcCC
Confidence            99999998 44 899999999999999988876

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.18  E-value=7.3e-11  Score=113.46  Aligned_cols=85  Identities=16%  Similarity=0.208  Sum_probs=68.9

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHH--cCCCcEEEEecCCCcc--cccc--------------chHHHhccCceEEeCCc
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSR--MGYDDITIYEKNTYDM--VTNV--------------SPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~--~G~~~V~v~e~~~~~~--~~~~--------------~~~~~~~~gv~~~~~~~  203 (240)
                      ...+++|+|||+||+||++|..|++  .|+ +|+|||+.+.++  +...              ....+...+++|+.|+.
T Consensus        23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~  101 (491)
T PLN02852         23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVT  101 (491)
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEE
Confidence            3567899999999999999999987  799 899999998643  1110              11234567899999999


Q ss_pred             cCcccCHHHHHhhcCCcEEEEecccc
Q psy16201        204 QGSFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       204 vg~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      +|+++++++|...  ||+|++++...
T Consensus       102 vg~dvtl~~L~~~--yDaVIlAtGa~  125 (491)
T PLN02852        102 LGRDVSLSELRDL--YHVVVLAYGAE  125 (491)
T ss_pred             ECccccHHHHhhh--CCEEEEecCCC
Confidence            9999999999865  99999997654

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.17  E-value=8.7e-11  Score=112.54  Aligned_cols=84  Identities=20%  Similarity=0.319  Sum_probs=66.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHH-HcCCCcEEEEecCCCcc-ccc------------cch---HHHhccCceEEeCCccC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLS-RMGYDDITIYEKNTYDM-VTN------------VSP---RIVKGTTSRHLYGPEQG  205 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~-~~G~~~V~v~e~~~~~~-~~~------------~~~---~~~~~~gv~~~~~~~vg  205 (240)
                      ...++|+|||+||+||++|.+|+ +.|+ +|+|||+.+.++ +..            +..   ..+...+++|..|+.+|
T Consensus        37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG  115 (506)
T PTZ00188         37 AKPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVG  115 (506)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEec
Confidence            45689999999999999999765 6799 799999998744 111            111   12345788999999999


Q ss_pred             cccCHHHHHhhcCCcEEEEecccc
Q psy16201        206 SFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       206 ~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      .++++++|.+.  ||+||+++...
T Consensus       116 ~Dvt~eeL~~~--YDAVIlAtGA~  137 (506)
T PTZ00188        116 VDLKMEELRNH--YNCVIFCCGAS  137 (506)
T ss_pred             CccCHHHHHhc--CCEEEEEcCCC
Confidence            99999999875  99999997654

>KOG1800|consensus

Probab=99.09  E-value=2.6e-10  Score=105.15  Aligned_cols=86  Identities=17%  Similarity=0.265  Sum_probs=69.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCCcc-------------ccccch---HHHhccCceEEeCCccCc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTYDM-------------VTNVSP---RIVKGTTSRHLYGPEQGS  206 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~~~-------------~~~~~~---~~~~~~gv~~~~~~~vg~  206 (240)
                      ..+|.|||+||+|+.+|..|.++  ++ +|+|||+.+.++             +.|++.   ...++...+|..|+.+|+
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~-~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~   98 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNA-HVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGR   98 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCC-eeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceecc
Confidence            44999999999999999999885  57 899999998643             333333   344677889999999999


Q ss_pred             ccCHHHHHhhcCCcEEEEeccc-chhhH
Q psy16201        207 FLNIELISEKTAYQWVYYSNCK-VLSNT  233 (240)
Q Consensus       207 ~i~~e~L~~~s~~d~V~~s~~~-~~~~l  233 (240)
                      ++++.+|.+.  ||+|++++.. -+++|
T Consensus        99 dvsl~eL~~~--ydavvLaYGa~~dR~L  124 (468)
T KOG1800|consen   99 DVSLKELTDN--YDAVVLAYGADGDRRL  124 (468)
T ss_pred             cccHHHHhhc--ccEEEEEecCCCCccc
Confidence            9999999986  9999999744 45554

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.39  E-value=4.4e-07  Score=64.60  Aligned_cols=32  Identities=38%  Similarity=0.697  Sum_probs=29.1

Q ss_pred             EECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        150 LIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       150 ViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      |||+|++||++|+.|++.|+ +|+|||+.+..+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGY-RVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTS-EEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCC-cEEEEecCcccC
Confidence            89999999999999999999 899999998754

...

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.36  E-value=7.1e-07  Score=77.56  Aligned_cols=36  Identities=25%  Similarity=0.703  Sum_probs=33.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+||+||+||++|+++|. +|.|||++..
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g~-kV~i~E~~ls   64 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAGL-KVAIFERKLS   64 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCCc-eEEEEEeecc
Confidence            35699999999999999999999999 8999999875

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.30  E-value=8.7e-07  Score=84.81  Aligned_cols=46  Identities=26%  Similarity=0.432  Sum_probs=40.2

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC-Cccccccch
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT-YDMVTNVSP  188 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~-~~~~~~~~~  188 (240)
                      +...++|+|||+|++||++|.+|++.|+ +|+|||++. .||.|++.+
T Consensus         7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~~~vGG~W~~~~   53 (461)
T PLN02172          7 PINSQHVAVIGAGAAGLVAARELRREGH-TVVVFEREKQVGGLWVYTP   53 (461)
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecCCCCcceeecCC
Confidence            3457899999999999999999999999 899999987 578887643

>PLN02487 zeta-carotene desaturase

Probab=98.28  E-value=1.4e-06  Score=85.54  Aligned_cols=60  Identities=27%  Similarity=0.450  Sum_probs=47.0

Q ss_pred             hhhHHHHHHHHhh--CCCcCCCCCCCCCCC--CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        117 GLQQFATEVFKDM--GISQIRPPDAKVDFP--DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       117 ~l~r~~~~~~~~~--~~~~~~~p~~~~~~~--~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      .||||++|+....  ++.+   | .+...+  .++|+|||+|++||++|+.|++.|+ +|+|||+.+..
T Consensus        47 ~l~r~~~d~~~~~~~~~~~---~-~~~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~-~v~i~E~~~~~  110 (569)
T PLN02487         47 SLDSNVSDMSVNAPKGLFP---P-EPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRPFI  110 (569)
T ss_pred             HHHHHhhhhhccccccccC---C-CCcccCCCCCeEEEECCCHHHHHHHHHHHhCCC-eeEEEecCCCC
Confidence            7999999987654  3322   2 122333  3599999999999999999999999 89999998753

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.28  E-value=1.8e-06  Score=62.65  Aligned_cols=57  Identities=14%  Similarity=0.266  Sum_probs=47.2

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      +|+|||+|+.|+.+|..|++.|. +|+++++.+...      ......+.+++.|+++.++..+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v   63 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKV   63 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            68999999999999999999999 899999998654      1223345677889999998854

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.22  E-value=7.6e-06  Score=75.10  Aligned_cols=83  Identities=20%  Similarity=0.341  Sum_probs=57.6

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-ccc------c--------chHHHhccCceEEeCCccCc-
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-VTN------V--------SPRIVKGTTSRHLYGPEQGS-  206 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-~~~------~--------~~~~~~~~gv~~~~~~~vg~-  206 (240)
                      ..+++|+|||+|++|+++|..|++.|+ +|++||+.+..+ ...      .        ....+...++++.++..+-. 
T Consensus        16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~   94 (352)
T PRK12770         16 PTGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCG   94 (352)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence            457899999999999999999999999 799999987532 211      0        11233455888887765411 


Q ss_pred             --------------ccCHHHHHhhcCCcEEEEeccc
Q psy16201        207 --------------FLNIELISEKTAYQWVYYSNCK  228 (240)
Q Consensus       207 --------------~i~~e~L~~~s~~d~V~~s~~~  228 (240)
                                    ....+....  .||.|++++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~--~~d~lviAtGs  128 (352)
T PRK12770         95 EPLHEEEGDEFVERIVSLEELVK--KYDAVLIATGT  128 (352)
T ss_pred             cccccccccccccccCCHHHHHh--hCCEEEEEeCC
Confidence                          112332222  49999999765

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.21  E-value=2.1e-06  Score=74.48  Aligned_cols=35  Identities=29%  Similarity=0.692  Sum_probs=30.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+||++|++|++.|+ +|.|||++..
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~-kV~v~E~~~~   51 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGL-KVAVIERKLS   51 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS--EEEEESSSS
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCC-eEEEEecCCC
Confidence            5699999999999999999999999 8999999875

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.17  E-value=2.1e-06  Score=80.27  Aligned_cols=36  Identities=39%  Similarity=0.441  Sum_probs=32.5

Q ss_pred             CeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~~~  182 (240)
                      ++|+|||+|++||+||+.|++.|  + +|+|||++++.|
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~-~V~vlEa~~~~G   38 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDA-DITLLEASDRLG   38 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCC-CEEEEEcCCCCc
Confidence            47999999999999999999988  8 799999988643

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.15  E-value=2.1e-06  Score=82.22  Aligned_cols=36  Identities=36%  Similarity=0.552  Sum_probs=33.6

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      +||+|+|+|.+||++|+.|+..|+ +|||||++++.|
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~-~vt~~ea~~~~G   36 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGY-DVTLYEARDRLG   36 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-ceEEEeccCccC
Confidence            589999999999999999999999 799999999744

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.14  E-value=2.4e-06  Score=82.21  Aligned_cols=38  Identities=32%  Similarity=0.446  Sum_probs=35.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV  183 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~  183 (240)
                      .++|+|||+|+.||++|.+|+++|+ +|+|+||+..+|.
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~-~V~VlE~~~~~GG   40 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGL-KVTVLEKNDRVGG   40 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCC-EEEEEEecCCCCc
Confidence            5689999999999999999999999 8999999987653

>KOG0029|consensus

Probab=98.13  E-value=3e-06  Score=81.94  Aligned_cols=40  Identities=30%  Similarity=0.404  Sum_probs=36.1

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ....++|+|||+|++||+||.+|.+.|+ +|+|+|++++.|
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~-~V~VLEARdRvG   51 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDFGF-DVLVLEARDRVG   51 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHcCC-ceEEEeccCCcC
Confidence            3567799999999999999999999999 799999998744

>KOG1399|consensus

Probab=98.11  E-value=2.9e-06  Score=80.93  Aligned_cols=43  Identities=28%  Similarity=0.475  Sum_probs=38.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-ccccccc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DMVTNVS  187 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~~~~~~  187 (240)
                      ..++|+|||+|+|||++|..|.+.|+ +|++|||.+. ||+|.+.
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~-~v~vfEr~~~iGGlW~y~   48 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGH-EVVVFERTDDIGGLWKYT   48 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCC-CceEEEecCCccceEeec
Confidence            46799999999999999999999999 7999999874 7888855

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.08  E-value=4e-06  Score=81.66  Aligned_cols=39  Identities=31%  Similarity=0.524  Sum_probs=32.6

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-ccccc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DMVTN  185 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~~~~  185 (240)
                      |+|+|||+|++||+++..|.+.|+ ++++||+++. ||+|.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~-~~~~fE~~~~iGG~W~   41 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGL-EVTCFEKSDDIGGLWR   41 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT--EEEEEESSSSSSGGGC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-CCeEEecCCCCCccCe
Confidence            799999999999999999999999 8999999874 88886

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK07233 hypothetical protein; Provisional

Probab=98.07  E-value=4.2e-06  Score=77.66  Aligned_cols=35  Identities=34%  Similarity=0.506  Sum_probs=32.5

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      +|+|||+|++||++|++|++.|+ +|+|+|+++..|
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~-~v~vlE~~~~~G   35 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGH-EVTVFEADDQLG   35 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEeCCCCC
Confidence            68999999999999999999999 899999998644

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.07  E-value=4e-06  Score=74.73  Aligned_cols=34  Identities=41%  Similarity=0.696  Sum_probs=29.8

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|+|||+||+|+++|..|+++|+ +|+|||+.+.
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~i~E~~~~   35 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGI-DVTIIERRPD   35 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhccc-ccccchhccc
Confidence            379999999999999999999999 8999999874

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.02  E-value=7.2e-06  Score=76.17  Aligned_cols=37  Identities=24%  Similarity=0.325  Sum_probs=33.6

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ....+|+|||+||+|+++|..|++.|+ +|+|+|+.+.
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   52 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQPA   52 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCCc
Confidence            345799999999999999999999999 8999999864

>PLN02576 protoporphyrinogen oxidase

Probab=98.01  E-value=7.8e-06  Score=78.00  Aligned_cols=39  Identities=21%  Similarity=0.312  Sum_probs=34.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCCCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNTYDM  182 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~~~~  182 (240)
                      ....+|+|||+|++||++|++|.++ |+ +|+|+|++++.|
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~-~v~vlEa~~rvG   49 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGV-NVLVTEARDRVG   49 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCC-CEEEEecCCCCC
Confidence            3456899999999999999999999 99 799999998644

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.98  E-value=1.2e-05  Score=74.16  Aligned_cols=35  Identities=26%  Similarity=0.426  Sum_probs=32.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++||++|..|++.|+ +|+|||+.+.
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~-~v~v~Er~~~   38 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGI-KVKLLEQAAE   38 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCC-cEEEEeeCcc
Confidence            4689999999999999999999999 7999999874

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.97  E-value=9.5e-06  Score=75.76  Aligned_cols=37  Identities=30%  Similarity=0.534  Sum_probs=34.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+||+|++||+.|++.|+ +|.|+|+...++
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~G~-~VlvlEk~~~~G   39 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKAGL-DVLVLEKGSEPG   39 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHcCC-eEEEEecCCCCC
Confidence            4689999999999999999999999 899999988655

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.96  E-value=1.2e-05  Score=76.92  Aligned_cols=36  Identities=33%  Similarity=0.612  Sum_probs=33.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ++|+|||+|++||++|..|+++|+ +|+|+|++...|
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~-~v~vlE~~~~~G   37 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGY-RVTLLEQHAQPG   37 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCC
Confidence            589999999999999999999999 899999998644

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PLN02268 probable polyamine oxidase

Probab=97.96  E-value=9.3e-06  Score=76.24  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=32.9

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .+|+|||+|.+||++|+.|.+.|+ +|+|+|++++.|
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~-~v~vlEa~~r~G   36 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASF-KVTLLESRDRIG   36 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCCC
Confidence            379999999999999999999999 799999998644

>PRK07045 putative monooxygenase; Reviewed

Probab=97.96  E-value=1.3e-05  Score=74.02  Aligned_cols=35  Identities=23%  Similarity=0.383  Sum_probs=32.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+||++|..|+++|+ +|+|||+.+.
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G~-~v~v~E~~~~   39 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARGH-SVTVVERAAR   39 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcCC-cEEEEeCCCc
Confidence            4589999999999999999999999 8999999874

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.95  E-value=9.7e-06  Score=76.43  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=33.1

Q ss_pred             CeEEEECCChhHHHHHHHHHHc----CCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRM----GYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~----G~~~V~v~e~~~~~~  182 (240)
                      ++|+|||+|++||++|+.|.++    |+ +|+|+|++++.|
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~-~v~vlE~~~r~G   42 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPV-ELTLVEASDRVG   42 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCC-cEEEEEcCCcCc
Confidence            5899999999999999999999    99 899999998644

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK06847 hypothetical protein; Provisional

Probab=97.94  E-value=1.2e-05  Score=73.62  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=32.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .++|+|||+||+||++|..|++.|+ +|+|||+.+.
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~-~v~v~E~~~~   38 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGI-AVDLVEIDPE   38 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCC
Confidence            5689999999999999999999999 8999998863

>PRK07208 hypothetical protein; Provisional

Probab=97.94  E-value=1.3e-05  Score=76.27  Aligned_cols=38  Identities=32%  Similarity=0.525  Sum_probs=34.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..++|+|||+|++||++|+.|+++|+ +|+|+|+.+..|
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g~-~v~v~E~~~~~G   40 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRGY-PVTVLEADPVVG   40 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCC
Confidence            35689999999999999999999999 799999988633

>PRK06753 hypothetical protein; Provisional

Probab=97.93  E-value=1.1e-05  Score=73.83  Aligned_cols=34  Identities=38%  Similarity=0.682  Sum_probs=31.7

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|+|||+||+||++|..|+++|+ +|+|||+.+.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~-~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGH-EVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCc
Confidence            379999999999999999999999 7999999874

>PRK07236 hypothetical protein; Provisional

Probab=97.92  E-value=1.3e-05  Score=74.15  Aligned_cols=34  Identities=26%  Similarity=0.571  Sum_probs=32.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|++||++|..|++.|+ +|+|||+.+
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   39 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGW-DVDVFERSP   39 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            5799999999999999999999999 799999986

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.91  E-value=1.3e-05  Score=74.58  Aligned_cols=35  Identities=34%  Similarity=0.396  Sum_probs=32.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .++|+|||+|++||++|..|+++|+ +|+|||+.+.
T Consensus         2 ~~~V~IvGgGiaGl~~A~~L~~~G~-~V~i~E~~~~   36 (400)
T PRK06475          2 RGSPLIAGAGVAGLSAALELAARGW-AVTIIEKAQE   36 (400)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCc
Confidence            3789999999999999999999999 7999999863

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.90  E-value=1.3e-05  Score=76.71  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=31.7

Q ss_pred             EEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        148 IALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       148 VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      |+|||+|.+||++|.+|++.|+ +|+|+|+++..|
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~-~V~VlE~~~~~G   34 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGI-PVTVVEQRDKPG   34 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCC-cEEEEECCCCCc
Confidence            6899999999999999999999 899999998744

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR00292 thiazole biosynthesis enzyme

Probab=97.89  E-value=2.4e-05  Score=69.38  Aligned_cols=35  Identities=23%  Similarity=0.661  Sum_probs=32.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+||++|+.|++.|+ +|+|+||...
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~-~V~vlEk~~~   55 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGL-KVCVLERSLA   55 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            5689999999999999999999999 8999999875

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.89  E-value=1.2e-05  Score=73.38  Aligned_cols=33  Identities=30%  Similarity=0.466  Sum_probs=31.0

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +|+|||+||+|+++|+.|+++|+ +|+|||+.+.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~-~v~v~Er~~~   33 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGL-KIALIEATPA   33 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCC-EEEEEeCCCc
Confidence            58999999999999999999999 8999999874

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=97.88  E-value=2.6e-05  Score=69.19  Aligned_cols=35  Identities=26%  Similarity=0.752  Sum_probs=32.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+|+++|+.|++.|+ +|+|+|+...
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~~   59 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKLS   59 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence            5689999999999999999999999 8999999864

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=97.87  E-value=1.6e-05  Score=75.83  Aligned_cols=36  Identities=39%  Similarity=0.522  Sum_probs=32.5

Q ss_pred             CeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~~~  182 (240)
                      ++|+|||+|++||++|+.|++.+  + +|+|||+.++.|
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~-~i~lfE~~~r~G   38 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDV-EVTLFEADDRVG   38 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCC-cEEEEecCCCCC
Confidence            47999999999999999999999  8 799999987533

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.87  E-value=2.4e-05  Score=72.59  Aligned_cols=32  Identities=31%  Similarity=0.588  Sum_probs=30.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      .+|+|||+||+|+++|+.|++.|+ +|+++|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~-~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGI-ETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence            379999999999999999999999 79999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=97.86  E-value=2e-05  Score=70.36  Aligned_cols=32  Identities=38%  Similarity=0.571  Sum_probs=30.6

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||+|++|+++|++|++.|+ +|+|+|+..
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~   32 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGD   32 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeecc
Confidence            58999999999999999999999 899999985

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.86  E-value=1.7e-05  Score=75.17  Aligned_cols=36  Identities=25%  Similarity=0.469  Sum_probs=31.6

Q ss_pred             CeEEEECCChhHHHHHHHHHHc------CCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRM------GYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~------G~~~V~v~e~~~~~~  182 (240)
                      ++|+|||+|++||++|+.|.+.      |+ +|+|+|++++.|
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~-~V~vlEa~~r~G   43 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDL-NLILVEKEEYLG   43 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCc-cEEEEecCCCcc
Confidence            4799999999999999999986      37 799999998644

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=97.86  E-value=2.7e-05  Score=76.24  Aligned_cols=39  Identities=41%  Similarity=0.482  Sum_probs=34.6

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHc----CCCcEEEEecCCCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRM----GYDDITIYEKNTYDM  182 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~----G~~~V~v~e~~~~~~  182 (240)
                      ...++|+|||+|++||++|.+|.+.    |+ +|+|||+.+..|
T Consensus        20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~-~VtIlEk~~~~G   62 (576)
T PRK13977         20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGE-NITILEELDVPG   62 (576)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHccCCCCC-cEEEEeCCCCCC
Confidence            4568999999999999999999995    68 899999998744

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.85  E-value=2e-05  Score=69.22  Aligned_cols=35  Identities=29%  Similarity=0.459  Sum_probs=31.7

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      .+|+|||+|++||++|..|+++|+ +|+|+|+.+.+
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~g   35 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANL-KTLIIEGMEPG   35 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-CEEEEeccCCC
Confidence            379999999999999999999999 79999987643

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.85  E-value=1.7e-05  Score=73.67  Aligned_cols=33  Identities=15%  Similarity=0.350  Sum_probs=31.2

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||+||+|+++|..|+++|+ +|+|+|+.+
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~   35 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGL-EVLLLDGGP   35 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence            479999999999999999999999 899999876

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.85  E-value=1.6e-05  Score=75.06  Aligned_cols=36  Identities=25%  Similarity=0.322  Sum_probs=27.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .+|+|||+|++||.||+.|++.|+ +|+|+|+++..+
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~-~V~vlE~~~~~g   36 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGA-RVLVLERNKRVG   36 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSS-
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCcccc
Confidence            379999999999999999999999 899999998543

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.84  E-value=1.8e-05  Score=66.01  Aligned_cols=37  Identities=35%  Similarity=0.541  Sum_probs=28.8

Q ss_pred             EEECCChhHHHHHHHHHHcCCCc-EEEEecCCC-cccccc
Q psy16201        149 ALIGCGPASLSCATFLSRMGYDD-ITIYEKNTY-DMVTNV  186 (240)
Q Consensus       149 aViG~G~~Gl~~a~~L~~~G~~~-V~v~e~~~~-~~~~~~  186 (240)
                      +|||+||+||++|..|.++|. + |+|+|++.. |+.|..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~-~~v~v~e~~~~~Gg~w~~   39 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGI-DPVVVLERNDRPGGVWRR   39 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT----EEEEESSSSSTTHHHC
T ss_pred             CEECcCHHHHHHHHHHHhCCC-CcEEEEeCCCCCCCeeEE
Confidence            699999999999999999999 6 999999954 666663

...

>PRK07588 hypothetical protein; Provisional

Probab=97.84  E-value=1.9e-05  Score=72.99  Aligned_cols=34  Identities=32%  Similarity=0.448  Sum_probs=31.5

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|+|||+||+||++|..|++.|+ +|+|||+.+.
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~-~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGH-EPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC-ceEEEeCCCC
Confidence            379999999999999999999999 7999998864

>PRK09126 hypothetical protein; Provisional

Probab=97.83  E-value=1.9e-05  Score=72.83  Aligned_cols=35  Identities=34%  Similarity=0.619  Sum_probs=32.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+|+++|..|+++|+ +|+|+|+.+.
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGL-KVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCc
Confidence            3589999999999999999999999 8999999864

>KOG1276|consensus

Probab=97.83  E-value=2.4e-05  Score=73.72  Aligned_cols=77  Identities=23%  Similarity=0.324  Sum_probs=50.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCCCccccccch----HHHhccCceEEeCCccCcccCHHHHHhhc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTYDMVTNVSP----RIVKGTTSRHLYGPEQGSFLNIELISEKT  217 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~~~~~~~~~~----~~~~~~gv~~~~~~~vg~~i~~e~L~~~s  217 (240)
                      ..+.+|||+|+|++||++||+|++++-+ .|++||+.++.|.|-.+-    -++=+.|.+.......+.-.+++.+.+- 
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL-   87 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL-   87 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc-
Confidence            4578999999999999999999999873 356699999877666441    1112234333333433333456655543 


Q ss_pred             CCc
Q psy16201        218 AYQ  220 (240)
Q Consensus       218 ~~d  220 (240)
                      +-+
T Consensus        88 Gl~   90 (491)
T KOG1276|consen   88 GLE   90 (491)
T ss_pred             Ccc
Confidence            443

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=97.83  E-value=2.3e-05  Score=68.53  Aligned_cols=33  Identities=30%  Similarity=0.606  Sum_probs=31.2

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +|+|||+|++|+++|..|+++|+ +|+|+|+...
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~~   34 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGL-RVLLLEKKSF   34 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            69999999999999999999999 8999999864

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.82  E-value=2.1e-05  Score=74.24  Aligned_cols=34  Identities=32%  Similarity=0.555  Sum_probs=31.6

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      +|+|||+|++||++|+.|.++|+ +|+|+|+.+..
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~-~v~vlE~~~~~   34 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGH-TPIVLEARDVL   34 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCC
Confidence            58999999999999999999999 79999998753

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.81  E-value=2.3e-05  Score=72.92  Aligned_cols=35  Identities=34%  Similarity=0.637  Sum_probs=32.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+|+++|..|+++|+ +|+|+|+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCC-CEEEEECCCC
Confidence            3589999999999999999999999 7999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=97.81  E-value=2.6e-05  Score=73.66  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=33.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+||+|+++|+.|+++|+ +|+|+||...++
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~-~V~llEr~~~~g   41 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGA-QVLVIERGNSAG   41 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCC-eEEEEEcCCCCC
Confidence            4699999999999999999999999 899999987543

>PRK10015 oxidoreductase; Provisional

Probab=97.80  E-value=2.8e-05  Score=73.65  Aligned_cols=37  Identities=22%  Similarity=0.360  Sum_probs=33.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+||+|+++|+.|++.|+ +|+|+|+.+.++
T Consensus         5 ~~DViIVGgGpAG~~aA~~LA~~G~-~VlliEr~~~~g   41 (429)
T PRK10015          5 KFDAIVVGAGVAGSVAALVMARAGL-DVLVIERGDSAG   41 (429)
T ss_pred             ccCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCCCC
Confidence            4689999999999999999999999 799999987644

>PRK06184 hypothetical protein; Provisional

Probab=97.79  E-value=3.2e-05  Score=74.27  Aligned_cols=35  Identities=31%  Similarity=0.533  Sum_probs=32.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+||++|..|++.|+ +|+|+|+.+.
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi-~v~viE~~~~   37 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGV-SFRLIEKAPE   37 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            4689999999999999999999999 8999999864

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.79  E-value=3.6e-05  Score=71.86  Aligned_cols=34  Identities=24%  Similarity=0.436  Sum_probs=30.9

Q ss_pred             CeEEEECCChhHHHHHHHHHHcC-CCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMG-YDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~~  180 (240)
                      .+|+|||+|++||++|..|+++| + +|+|||+.+.
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~-~v~v~Er~~~   35 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHL-NVQLFEAAPA   35 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCC-CEEEEecCCc
Confidence            37999999999999999999998 7 7999999864

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.79  E-value=2.2e-05  Score=72.02  Aligned_cols=33  Identities=36%  Similarity=0.544  Sum_probs=30.8

Q ss_pred             eEEEECCChhHHHHHHHHHHcC-CCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMG-YDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~~  180 (240)
                      +|+|||+||+|+++|..|+++| + +|+|+|+.+.
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~-~v~v~E~~~~   34 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKI-KIALIEANSP   34 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCc-eEEEEeCCCc
Confidence            5899999999999999999999 9 8999999864

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK05868 hypothetical protein; Validated

Probab=97.79  E-value=2.6e-05  Score=72.21  Aligned_cols=34  Identities=26%  Similarity=0.487  Sum_probs=31.7

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ++|+|||+|++|+++|..|+++|+ +|+|||+.+.
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~-~v~viE~~~~   35 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGY-SVTMVERHPG   35 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Confidence            489999999999999999999999 7999999864

>PRK07538 hypothetical protein; Provisional

Probab=97.78  E-value=2.6e-05  Score=72.83  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=31.5

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|+|||+||+||++|..|+++|+ +|+|||+.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGI-EVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-cEEEEEcCCc
Confidence            379999999999999999999999 7999999863

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=97.78  E-value=2.7e-05  Score=72.07  Aligned_cols=36  Identities=19%  Similarity=0.389  Sum_probs=32.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+||+|+++|+.|+++|+ +|+|+|+.+.
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G~-~v~liE~~~~   40 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAGL-SVALVEGREP   40 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCC-EEEEEeCCCC
Confidence            45689999999999999999999999 7999999763

>PRK08244 hypothetical protein; Provisional

Probab=97.78  E-value=3.4e-05  Score=73.87  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=31.8

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|+|||+||+||++|..|+++|+ +|+|+|+.+.
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~-~v~viEr~~~   36 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGV-KTCVIERLKE   36 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            589999999999999999999999 8999999864

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.76  E-value=3e-05  Score=71.29  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=32.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+|+++|..|++.|+ +|+|+|+...
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~   39 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP   39 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence            4589999999999999999999999 8999999865

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.76  E-value=2.9e-05  Score=71.86  Aligned_cols=33  Identities=21%  Similarity=0.340  Sum_probs=31.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||+||+|+++|..|++.|+ +|+|||+.+
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~-~v~l~E~~~   36 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGR-SVAVIEGGE   36 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCC-cEEEEcCCC
Confidence            589999999999999999999999 899999874

>PRK08013 oxidoreductase; Provisional

Probab=97.76  E-value=3e-05  Score=72.27  Aligned_cols=35  Identities=20%  Similarity=0.330  Sum_probs=32.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+|+++|..|+++|+ +|+|+|+.+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~-~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGL-RVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCC-EEEEEeCCCC
Confidence            3689999999999999999999999 8999999864

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.75  E-value=3.9e-05  Score=73.25  Aligned_cols=36  Identities=28%  Similarity=0.429  Sum_probs=32.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ....+|+|||+||+|+++|..|+++|+ +|+++|+..
T Consensus        37 ~~~~DViIVGaGPAG~~aA~~LA~~G~-~VlllEr~~   72 (450)
T PLN00093         37 GRKLRVAVIGGGPAGACAAETLAKGGI-ETFLIERKL   72 (450)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            445799999999999999999999999 799999875

>PRK10262 thioredoxin reductase; Provisional

Probab=97.75  E-value=3.5e-05  Score=69.58  Aligned_cols=37  Identities=19%  Similarity=0.399  Sum_probs=32.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ..++|+|||+||+||++|..|+++|+ +++++|+...+
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~-~~~~ie~~~~g   41 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGMEKG   41 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC-CeEEEEeecCC
Confidence            46789999999999999999999999 79999965544

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.75  E-value=3.4e-05  Score=71.64  Aligned_cols=35  Identities=34%  Similarity=0.592  Sum_probs=32.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+||++|..|++.|+ +|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~-~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGI-DSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCC-CEEEEEcCCc
Confidence            3589999999999999999999999 7999999863

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.74  E-value=4e-05  Score=70.11  Aligned_cols=37  Identities=30%  Similarity=0.473  Sum_probs=33.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ...+|+|||+|++|+++|++|+++|+ +|+++|+...+
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~   39 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAG   39 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccC
Confidence            46799999999999999999999999 89999988753

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.72  E-value=3.7e-05  Score=70.87  Aligned_cols=35  Identities=37%  Similarity=0.563  Sum_probs=32.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+|+++|..|+++|+ +|+|+|+.+.
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~~   41 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEPP   41 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCCC
Confidence            4589999999999999999999999 8999999863

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.71  E-value=4.7e-05  Score=74.38  Aligned_cols=37  Identities=32%  Similarity=0.504  Sum_probs=33.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+||+||++|.+|+++|+ +|+|+|+...+|
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~-~V~liE~~~~GG   40 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKL-DTLIIEKDDFGG   40 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCc
Confidence            4689999999999999999999999 899999977554

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.71  E-value=3.9e-05  Score=71.28  Aligned_cols=33  Identities=39%  Similarity=0.696  Sum_probs=31.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ..+|+|||+||+||++|..|++.|+ +|+|+|+.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~-~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGL-DVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Confidence            4689999999999999999999999 89999998

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.70  E-value=4.1e-05  Score=71.67  Aligned_cols=32  Identities=31%  Similarity=0.568  Sum_probs=30.5

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||+||+|+++|+.|+++|+ +|+|+|+..
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~-~V~llE~~~   33 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGI-QTFLLERKP   33 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            79999999999999999999999 899999875

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.69  E-value=3.9e-05  Score=70.58  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=30.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc---CCCcEEEEecC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM---GYDDITIYEKN  178 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~---G~~~V~v~e~~  178 (240)
                      ..+|+|||+||+|+++|+.|+++   |+ +|+|||+.
T Consensus         3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~-~v~v~E~~   38 (395)
T PRK05732          3 RMDVIIVGGGMAGATLALALSRLSHGGL-PVALIEAF   38 (395)
T ss_pred             cCCEEEECcCHHHHHHHHHhhhcccCCC-EEEEEeCC
Confidence            45899999999999999999998   99 89999995

>PRK06126 hypothetical protein; Provisional

Probab=97.68  E-value=5e-05  Score=73.59  Aligned_cols=36  Identities=31%  Similarity=0.485  Sum_probs=32.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+||+||++|..|+++|+ +|+|+|+.+.
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~G~-~v~viEr~~~   41 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRRGV-DSILVERKDG   41 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            35689999999999999999999999 8999998863

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.68  E-value=0.00011  Score=70.32  Aligned_cols=73  Identities=16%  Similarity=0.268  Sum_probs=54.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV  222 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V  222 (240)
                      ..+++|+|||+|++|+++|..|+++|+ +|+++|+.+...... ..+.++..|+.+.++....       +..  .+|.|
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~-~~~~l~~~gv~~~~~~~~~-------~~~--~~D~V   82 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRA-LAAILEALGATVRLGPGPT-------LPE--DTDLV   82 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHH-HHHHHHHcCCEEEECCCcc-------ccC--CCCEE
Confidence            457799999999999999999999999 799999776432111 2345677899998876431       111  38889


Q ss_pred             EEec
Q psy16201        223 YYSN  226 (240)
Q Consensus       223 ~~s~  226 (240)
                      ++|.
T Consensus        83 v~s~   86 (480)
T PRK01438         83 VTSP   86 (480)
T ss_pred             EECC
Confidence            8885

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.68  E-value=7e-05  Score=72.74  Aligned_cols=36  Identities=19%  Similarity=0.461  Sum_probs=33.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+||+||++|..|++.|+ +|+|+|+.+.
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~-~v~viE~~~~   57 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGV-PVVLLDDDDT   57 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence            45689999999999999999999999 7999999873

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.68  E-value=5.2e-05  Score=70.95  Aligned_cols=36  Identities=25%  Similarity=0.385  Sum_probs=33.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ..+|+|||+||+||.||..+++.|+ +|+|||+.+..
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~-~V~lid~~~k~   38 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGR-RVLLIDKGPKL   38 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCC-EEEEEecCccc
Confidence            4689999999999999999999999 89999998853

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.68  E-value=5.8e-05  Score=71.94  Aligned_cols=43  Identities=28%  Similarity=0.379  Sum_probs=37.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCc-EEEEecCCC-cccccc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDD-ITIYEKNTY-DMVTNV  186 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~-V~v~e~~~~-~~~~~~  186 (240)
                      ....+|+|||+|++||++|+.|.+.|. . ++||||+.. |+.|+.
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~-~~~~i~Ek~~~~Gg~W~~   50 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGV-PDFVIFEKRDDVGGTWRY   50 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCC-CcEEEEEccCCcCCcchh
Confidence            457799999999999999999999999 6 999999964 666663

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=97.68  E-value=5.1e-05  Score=69.49  Aligned_cols=33  Identities=18%  Similarity=0.299  Sum_probs=30.8

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +|+|||+|++|+++|++|+++|+ +|+|+|+...
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~   34 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL   34 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            79999999999999999999999 8999999753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR02730 carot_isom carotene isomerase

Probab=97.67  E-value=5e-05  Score=72.86  Aligned_cols=35  Identities=26%  Similarity=0.300  Sum_probs=32.7

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      +|+|||+|.+||++|.+|+++|+ +|+|+||+..+|
T Consensus         2 dvvViGaG~~Gl~aA~~La~~G~-~V~vlE~~~~~G   36 (493)
T TIGR02730         2 DAIVIGSGIGGLVTATQLAVKGA-KVLVLERYLIPG   36 (493)
T ss_pred             cEEEECCcHHHHHHHHHHHHCCC-cEEEEECCCCCC
Confidence            69999999999999999999999 899999998754

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.67  E-value=5.2e-05  Score=70.56  Aligned_cols=33  Identities=30%  Similarity=0.685  Sum_probs=31.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|+|||+|.+|+++|++|++.|+ +|+|+|+..
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            489999999999999999999999 899999986

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.66  E-value=6e-05  Score=62.55  Aligned_cols=32  Identities=44%  Similarity=0.638  Sum_probs=30.2

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||+|++|+++|..|++.|+ +|+++|+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~-~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGA-KVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCC-eEEEEeccc
Confidence            68999999999999999999999 899999876

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.66  E-value=4.5e-05  Score=70.34  Aligned_cols=34  Identities=26%  Similarity=0.462  Sum_probs=31.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+||+|+++|..|++.|+ +|+|+|+..
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~   38 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGF-SVAVLEHAA   38 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence            4689999999999999999999999 899999875

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.65  E-value=0.00015  Score=68.78  Aligned_cols=75  Identities=13%  Similarity=0.175  Sum_probs=52.6

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEec
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSN  226 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~  226 (240)
                      +|+|||.|++|+++|..|+++|+ +|+++|+........ ....++..|+++.++...... .++.+..  .+|.|++|.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~~~~~-~~~~l~~~gi~~~~g~~~~~~-~~~~~~~--~~d~vv~s~   76 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSPELLE-RQQELEQEGITVKLGKPLELE-SFQPWLD--QPDLVVVSP   76 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCchhhHH-HHHHHHHcCCEEEECCccchh-hhhHHhh--cCCEEEECC
Confidence            69999999999999999999999 899999887654211 113456679998876632110 1112222  489999985

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.65  E-value=5.8e-05  Score=71.81  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=33.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+||+|+++|..|++.|+ +|+|+|+...||
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~-~V~liE~~~~GG   38 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGA-KALLVEAKKLGG   38 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-cEEEeccccccc
Confidence            4689999999999999999999999 899999976555

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06185 hypothetical protein; Provisional

Probab=97.65  E-value=6.1e-05  Score=69.87  Aligned_cols=35  Identities=34%  Similarity=0.639  Sum_probs=32.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...+|+|||+|++|+++|..|++.|+ +|+|+|+.+
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~   39 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA   39 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            35689999999999999999999999 899999875

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.64  E-value=5e-05  Score=70.12  Aligned_cols=32  Identities=25%  Similarity=0.572  Sum_probs=30.1

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      .+|+|||+||+|+++|..|++.|+ +|+|+|+.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~-~v~l~E~~   33 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGI-KTTIFESK   33 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCC-eEEEecCC
Confidence            379999999999999999999999 89999986

>PRK06370 mercuric reductase; Validated

Probab=97.64  E-value=6.6e-05  Score=71.41  Aligned_cols=37  Identities=19%  Similarity=0.286  Sum_probs=33.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+||+|+++|..|++.|+ +|+++|+...||
T Consensus         5 ~~DvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~~~GG   41 (463)
T PRK06370          5 RYDAIVIGAGQAGPPLAARAAGLGM-KVALIERGLLGG   41 (463)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-eEEEEecCccCC
Confidence            4799999999999999999999999 899999876544

>PRK14694 putative mercuric reductase; Provisional

Probab=97.64  E-value=7e-05  Score=71.42  Aligned_cols=39  Identities=26%  Similarity=0.346  Sum_probs=34.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ....+|+|||+||+|+++|..|++.|. +|+|+|+...||
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~g~-~v~lie~~~~GG   42 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATERGA-RVTLIERGTIGG   42 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCC-cEEEEEcccccc
Confidence            356799999999999999999999999 899999876554

>PRK06116 glutathione reductase; Validated

Probab=97.63  E-value=6.3e-05  Score=71.21  Aligned_cols=37  Identities=19%  Similarity=0.329  Sum_probs=33.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+||+|+++|..|+++|+ +|+|+|+...||
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~-~V~liE~~~~GG   40 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGA-KVALIEAKRLGG   40 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccchhh
Confidence            4689999999999999999999999 899999875544

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.63  E-value=6.9e-05  Score=71.11  Aligned_cols=38  Identities=24%  Similarity=0.424  Sum_probs=34.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ...+|+|||+||+|+++|..|++.|+ +|.++|+...||
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~-~V~liE~~~~GG   40 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGL-KVAIVEKEKLGG   40 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC-cEEEEecccccc
Confidence            35689999999999999999999999 899999987555

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.62  E-value=6.4e-05  Score=67.37  Aligned_cols=33  Identities=36%  Similarity=0.585  Sum_probs=31.0

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +|+|||+|++||+||+.|+..|+ +|+||||..-
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~-~vtV~eKg~G   35 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGR-EVTVFEKGRG   35 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCc-EEEEEEcCCC
Confidence            69999999999999999999999 7999999863

>PLN02612 phytoene desaturase

Probab=97.62  E-value=8.1e-05  Score=73.03  Aligned_cols=38  Identities=26%  Similarity=0.364  Sum_probs=34.5

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +...++|+|||+|++||++|++|+++|+ +|+|+|+.+.
T Consensus        90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g~-~~~~~e~~~~  127 (567)
T PLN02612         90 PAKPLKVVIAGAGLAGLSTAKYLADAGH-KPILLEARDV  127 (567)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEecCCC
Confidence            3456899999999999999999999999 7999999875

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.61  E-value=6.5e-05  Score=75.00  Aligned_cols=36  Identities=22%  Similarity=0.450  Sum_probs=33.2

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+..+|+|||+|++||++|..|+++|+ +|+|||+..
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi-~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGF-DVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEeccc
Confidence            456789999999999999999999999 899999975

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.61  E-value=7.3e-05  Score=68.32  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=32.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|++|+++|+ +|+|+|+...
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~   37 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP   37 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence            3579999999999999999999999 8999999764

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.61  E-value=6.1e-05  Score=70.13  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=31.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ..+|+|||+||+|+++|..|++.|+ +|+|+|+.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~-~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDL-RIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            4589999999999999999999999 89999986

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.61  E-value=7.2e-05  Score=70.94  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=33.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+||+|+++|..++++|+ +|+++|+...||
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~-~V~lie~~~~GG   38 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGA-KVAIAEEPRVGG   38 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCccCc
Confidence            4689999999999999999999999 899999865554

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.60  E-value=9.6e-05  Score=71.71  Aligned_cols=37  Identities=27%  Similarity=0.548  Sum_probs=33.7

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ....+|+|||+||+||++|..|++.|+ +|+|+|+...
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~-~v~v~Er~~~   44 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGV-RVLVLERWPT   44 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            446799999999999999999999999 8999999864

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.59  E-value=7.3e-05  Score=71.69  Aligned_cols=34  Identities=38%  Similarity=0.626  Sum_probs=31.6

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      +|+|||+|++||++|+.|++.|+ +|+|||+++..
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~-~v~v~E~~~~~   34 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGH-EVDIYESRSFI   34 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEecCCC
Confidence            58999999999999999999999 79999998863

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.59  E-value=9e-05  Score=70.71  Aligned_cols=38  Identities=21%  Similarity=0.391  Sum_probs=34.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ...+|+|||+||+|+++|..|++.|+ +|+++|+...||
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~~~GG   40 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGL-KTALVEKGKLGG   40 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-eEEEEEccCCCc
Confidence            35799999999999999999999999 899999876555

>PLN02529 lysine-specific histone demethylase 1

Probab=97.58  E-value=9.2e-05  Score=74.74  Aligned_cols=39  Identities=21%  Similarity=0.370  Sum_probs=35.1

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ...++|+|||+|++||++|..|+++|+ +|+|+|+++..|
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~g~-~v~v~E~~~~~G  196 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSFGF-KVVVLEGRNRPG  196 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHcCC-cEEEEecCccCc
Confidence            456799999999999999999999999 799999988633

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.58  E-value=9e-05  Score=67.74  Aligned_cols=33  Identities=24%  Similarity=0.462  Sum_probs=30.8

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +|+|||+|++|+++|+.|++.|+ +|+|+|+...
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~   34 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSR   34 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence            69999999999999999999999 7999998763

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.57  E-value=6.9e-05  Score=69.23  Aligned_cols=34  Identities=18%  Similarity=0.293  Sum_probs=30.8

Q ss_pred             CeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~  180 (240)
                      .+|+|||+||+||++|..|++.|  + +|+|+|+.+.
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~-~v~liE~~~~   37 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHL-PVTVVDAAPA   37 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCC-EEEEEeCCCc
Confidence            47999999999999999999996  9 8999999753

>TIGR02053 MerA mercuric reductase

Probab=97.57  E-value=8.8e-05  Score=70.49  Aligned_cols=37  Identities=19%  Similarity=0.398  Sum_probs=33.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV  183 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~  183 (240)
                      .+|+|||+||+|+++|..|++.|+ +|+++|+...||.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~-~v~lie~~~~GG~   37 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGA-SVAMVERGPLGGT   37 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCcccCC
Confidence            379999999999999999999999 8999999876653

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PLN02568 polyamine oxidase

Probab=97.56  E-value=0.0001  Score=71.99  Aligned_cols=37  Identities=27%  Similarity=0.395  Sum_probs=33.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC-----CCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG-----YDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G-----~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+|++||++|..|++.|     + +|+|||++...|
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~-~v~v~E~~~~~G   46 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTSSAANDMF-ELTVVEGGDRIG   46 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcccccCCc-eEEEEeCCCCcC
Confidence            468999999999999999999887     8 799999988644

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.53  E-value=0.00011  Score=69.70  Aligned_cols=37  Identities=24%  Similarity=0.442  Sum_probs=33.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC-Ccc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT-YDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~-~~~  182 (240)
                      ..+|+|||+||+|+++|..|++.|+ +|+++|+.+ .||
T Consensus         5 ~yDvvVIGaGpaG~~aA~~la~~G~-~v~liE~~~~~GG   42 (461)
T PRK05249          5 DYDLVVIGSGPAGEGAAMQAAKLGK-RVAVIERYRNVGG   42 (461)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-EEEEEeccccccc
Confidence            4689999999999999999999999 899999964 454

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.52  E-value=9.3e-05  Score=68.19  Aligned_cols=33  Identities=36%  Similarity=0.550  Sum_probs=30.5

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +|+|||+||+|+++|+.|++.|+ +|+|+|+.+.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~-~v~liE~~~~   33 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGL-RVQLIEPHPP   33 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCC
Confidence            58999999999999999999999 8999998763

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PLN02463 lycopene beta cyclase

Probab=97.52  E-value=0.00012  Score=69.95  Aligned_cols=36  Identities=22%  Similarity=0.398  Sum_probs=32.7

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ....+|+|||+||+|+++|..|++.|+ +|.|+|+.+
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~Gl-~V~liE~~~   61 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAGL-SVCCIDPSP   61 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCCC-eEEEeccCc
Confidence            445699999999999999999999999 899999875

>PRK06834 hypothetical protein; Provisional

Probab=97.52  E-value=0.00012  Score=70.64  Aligned_cols=35  Identities=29%  Similarity=0.475  Sum_probs=32.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+|+++|..|+++|+ +|+|+|+.+.
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~-~v~vlEr~~~   37 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGV-DVAIVERRPN   37 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            4689999999999999999999999 8999998763

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.52  E-value=0.00011  Score=69.93  Aligned_cols=34  Identities=26%  Similarity=0.425  Sum_probs=31.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ++|+|||+|++|+++|+.|+++|+ +|+|+|+.+.
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl-~V~LiE~rp~   36 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGV-PVELYEMRPV   36 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-cEEEEEccCc
Confidence            589999999999999999999999 7999997653

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.51  E-value=0.00011  Score=69.31  Aligned_cols=34  Identities=24%  Similarity=0.384  Sum_probs=31.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+||+|+++|..|++.|+ +|+|+|+..
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~-~V~liE~~~   36 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGK-KVALVEESK   36 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-EEEEEecCC
Confidence            4689999999999999999999999 899999975

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.51  E-value=0.00013  Score=74.21  Aligned_cols=39  Identities=23%  Similarity=0.407  Sum_probs=35.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ...++|+|||+|++||++|+.|+++|+ +|+|+|++...|
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~-~v~v~E~~~r~G  274 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGF-KVVVLEGRARPG  274 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeccccCC
Confidence            456789999999999999999999999 799999988643

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.50  E-value=0.00013  Score=72.57  Aligned_cols=34  Identities=35%  Similarity=0.571  Sum_probs=31.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|++|+++|+.|+++|+ +|+|+|+..
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~  293 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGW-QVTLYEADE  293 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            3589999999999999999999999 799999974

>PRK07190 hypothetical protein; Provisional

Probab=97.49  E-value=0.00014  Score=70.04  Aligned_cols=35  Identities=31%  Similarity=0.525  Sum_probs=32.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+||++|..|+++|+ +|+|+|+.+.
T Consensus         5 ~~dVlIVGAGPaGL~lA~~Lar~Gi-~V~llEr~~~   39 (487)
T PRK07190          5 VTDVVIIGAGPVGLMCAYLGQLCGL-NTVIVDKSDG   39 (487)
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCC-CEEEEeCCCc
Confidence            4689999999999999999999999 7999999874

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.49  E-value=0.00013  Score=68.88  Aligned_cols=34  Identities=24%  Similarity=0.478  Sum_probs=31.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+||+|+++|..|+++|+ +|+|+|+.+
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~-~V~lie~~~   36 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGW-RVALIEQSN   36 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCC-eEEEEcCCC
Confidence            4689999999999999999999999 899999874

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.48  E-value=0.0002  Score=69.39  Aligned_cols=34  Identities=21%  Similarity=0.462  Sum_probs=31.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK  177 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~  177 (240)
                      ...++|+|||+||+|+++|.+|++.|+ +|+|++.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~-~v~li~~  243 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGL-RTAMVAE  243 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEec
Confidence            345799999999999999999999999 8999985

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK11445 putative oxidoreductase; Provisional

Probab=97.48  E-value=0.00012  Score=67.22  Aligned_cols=32  Identities=28%  Similarity=0.471  Sum_probs=30.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||+||+|+++|..|++. + +|+|+|+.+
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~-~V~liE~~~   33 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-M-KVIAIDKKH   33 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-C-CEEEEECCC
Confidence            4799999999999999999999 9 899999876

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.48  E-value=0.00013  Score=69.85  Aligned_cols=39  Identities=26%  Similarity=0.341  Sum_probs=35.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .-.++++|||+|++|+++|..|+..|+ +|.++|+++..|
T Consensus       122 ~v~~svLVIGGGvAGitAAl~La~~G~-~v~LVEKepsiG  160 (622)
T COG1148         122 EVSKSVLVIGGGVAGITAALELADMGF-KVYLVEKEPSIG  160 (622)
T ss_pred             hhccceEEEcCcHHHHHHHHHHHHcCC-eEEEEecCCccc
Confidence            446899999999999999999999999 799999999744

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.48  E-value=0.00013  Score=69.02  Aligned_cols=36  Identities=22%  Similarity=0.413  Sum_probs=32.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .+|+|||+||+|+++|..|++.|+ +|+|+|+...||
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~-~v~lie~~~~GG   37 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGL-KVALVEKEYLGG   37 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCCCC
Confidence            479999999999999999999999 899999954454

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.48  E-value=0.00014  Score=68.91  Aligned_cols=39  Identities=23%  Similarity=0.423  Sum_probs=34.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcccc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVT  184 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~  184 (240)
                      ..+|+|||+||+|+++|..|++.|. +|.|+|+...||.+
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~GG~~   41 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGK-KVALIEKGPLGGTC   41 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCccccce
Confidence            3689999999999999999999999 89999996555533

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=97.47  E-value=0.00013  Score=67.67  Aligned_cols=33  Identities=33%  Similarity=0.450  Sum_probs=31.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRM--GYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~  179 (240)
                      .+|+|||+|++|+++|+.|+++  |+ +|+|+|+..
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~   37 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES   37 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence            4899999999999999999999  99 899999975

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.47  E-value=0.00014  Score=68.11  Aligned_cols=36  Identities=17%  Similarity=0.271  Sum_probs=32.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .+|+|||+|++|+++|..|++.|. +|+|+|+.+..|
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~-~V~viEk~~~iG   37 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNK-RVLVVEKRNHIG   37 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCCCC
Confidence            379999999999999999999999 899999977543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.47  E-value=0.00014  Score=69.23  Aligned_cols=37  Identities=19%  Similarity=0.423  Sum_probs=33.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+||+|+++|..|++.|+ +|+++|+...||
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~-~V~lie~~~~GG   40 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGL-KTAVVEKKYWGG   40 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCCCC
Confidence            3689999999999999999999999 899999875544

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.46  E-value=0.00023  Score=68.84  Aligned_cols=35  Identities=23%  Similarity=0.393  Sum_probs=31.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ....+|+|||+||+||++|.+|++.|+ +|+|++..
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~-~v~li~~~  243 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGI-RTGIVAER  243 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            345799999999999999999999999 79999864

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.46  E-value=0.00012  Score=69.09  Aligned_cols=32  Identities=19%  Similarity=0.436  Sum_probs=29.7

Q ss_pred             eEEEECCChhHHHHHHHHHH----cCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSR----MGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~----~G~~~V~v~e~~~  179 (240)
                      +|+|||+||+|+++|..|++    .|+ +|+|+|+.+
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~-~v~viE~~~   37 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDL-KVLLLDAVD   37 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCC-eEEEEeCCC
Confidence            69999999999999999998    799 899999943

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.46  E-value=0.00017  Score=71.67  Aligned_cols=36  Identities=31%  Similarity=0.572  Sum_probs=32.5

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+||+||++|..|++. |+ +|+|+|+.+.
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi-~v~IiE~~~~   67 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDI-TTRIVERKPG   67 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCC-cEEEEEcCCC
Confidence            467899999999999999999995 99 7999999863

>KOG0685|consensus

Probab=97.45  E-value=0.00018  Score=68.63  Aligned_cols=40  Identities=35%  Similarity=0.391  Sum_probs=35.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+.+|+|||+|.|||+||..|.+.|+.+|+|||..++-|
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG   58 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG   58 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence            3456999999999999999999988877999999998733

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=97.45  E-value=0.00015  Score=67.32  Aligned_cols=32  Identities=19%  Similarity=0.586  Sum_probs=30.4

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||+|.+|+++|++|+++|+ +|+|+|+..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            79999999999999999999999 899999974

>PLN02985 squalene monooxygenase

Probab=97.43  E-value=0.00018  Score=69.85  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ....+|+|||+|++|+++|..|++.|+ +|+|+|+..
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G~-~V~vlEr~~   76 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDGR-RVHVIERDL   76 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcCC-eEEEEECcC
Confidence            445689999999999999999999999 899999975

>PRK13748 putative mercuric reductase; Provisional

Probab=97.43  E-value=0.00017  Score=70.05  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=34.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ...+|+|||+||+|+++|..|++.|. +|.|+|+...||
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~-~v~lie~~~~GG  134 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGA-RVTLIERGTIGG  134 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCccee
Confidence            35799999999999999999999999 899999886555

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.43  E-value=0.0002  Score=68.02  Aligned_cols=39  Identities=28%  Similarity=0.396  Sum_probs=35.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+.+|+|||+|.+||++|+.|.+.|| +|+|+|.+++.|
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~-~v~ilEar~r~G   43 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGY-QVQILEARDRVG   43 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCc-EEEEEeccCCcC
Confidence            567899999999999999999999999 899999988644

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=97.41  E-value=0.00026  Score=67.41  Aligned_cols=36  Identities=17%  Similarity=0.378  Sum_probs=32.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|++|+++|++|+++  |. +|+|+|+...
T Consensus        23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~-~V~vlE~~~~   60 (460)
T TIGR03329        23 TQADVCIVGGGFTGLWTAIMIKQQRPAL-DVLVLEADLC   60 (460)
T ss_pred             ceeCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEeCCcc
Confidence            346899999999999999999998  89 8999998763

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>KOG2614|consensus

Probab=97.40  E-value=0.00018  Score=67.53  Aligned_cols=34  Identities=29%  Similarity=0.544  Sum_probs=31.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||||++||++|..|+|+|+ +|+|||+..
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~-~v~VlE~~e   35 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGI-DVVVLESRE   35 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCC-eEEEEeecc
Confidence            3589999999999999999999999 899999865

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.00021  Score=65.05  Aligned_cols=36  Identities=31%  Similarity=0.510  Sum_probs=31.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCc-EEEEecCCCc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDD-ITIYEKNTYD  181 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~-V~v~e~~~~~  181 (240)
                      ..+|+|||+||+||+||.++.|.|. + +.|+|+...+
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r~~l-~~~li~~~~~~g   39 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAARAGL-KVVLILEGGEPG   39 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHHcCC-CcEEEEecCCcC
Confidence            4689999999999999999999998 6 8888876444

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.39  E-value=0.00021  Score=67.67  Aligned_cols=34  Identities=26%  Similarity=0.520  Sum_probs=28.0

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      +|+|||+|++|++||+.+++.|. +|.++|+....
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~-~VlLiE~~~~l   34 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGA-KVLLIEKGGFL   34 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS--EEEE-SSSSS
T ss_pred             CEEEECccHHHHHHHHHHHHCCC-EEEEEECCccC
Confidence            58999999999999999999999 89999998853

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.38  E-value=0.0002  Score=68.40  Aligned_cols=37  Identities=22%  Similarity=0.387  Sum_probs=32.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC-CCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN-TYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~-~~~~  182 (240)
                      ..+|+|||+||+|+++|..++++|+ +|+++|+. ..||
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~-~V~liE~~~~~GG   40 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGL-KVACVEGRSTLGG   40 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCceee
Confidence            3689999999999999999999999 89999974 3444

>PTZ00367 squalene epoxidase; Provisional

Probab=97.36  E-value=0.00021  Score=70.21  Aligned_cols=36  Identities=22%  Similarity=0.285  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ....+|+|||+|++|+++|..|++.|+ +|+|+|+..
T Consensus        31 ~~~~dViIVGaGiaGlalA~aLar~G~-~V~VlEr~~   66 (567)
T PTZ00367         31 NYDYDVIIVGGSIAGPVLAKALSKQGR-KVLMLERDL   66 (567)
T ss_pred             ccCccEEEECCCHHHHHHHHHHHhcCC-EEEEEcccc
Confidence            346799999999999999999999999 899999975

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.35  E-value=0.00018  Score=66.61  Aligned_cols=35  Identities=46%  Similarity=0.675  Sum_probs=30.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|++||+||+.|+++ + +||+||....
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-h-dVTLfEA~~r   41 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-H-DVTLFEADRR   41 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-c-ceEEEecccc
Confidence            467999999999999999998654 5 6999999875

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.35  E-value=0.00024  Score=67.56  Aligned_cols=35  Identities=26%  Similarity=0.443  Sum_probs=32.4

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      +|+|||+||+|+++|..|++.|. +|+++|+...||
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~-~V~lie~~~~GG   36 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGK-NVTLIDEADLGG   36 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-cEEEEECCcccc
Confidence            79999999999999999999999 799999987654

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=97.34  E-value=0.0003  Score=65.37  Aligned_cols=37  Identities=24%  Similarity=0.496  Sum_probs=32.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~  179 (240)
                      ....+|+|||+|++|+++|++|+++ |..+|+|+|+..
T Consensus        28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            4567999999999999999999985 842799999975

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.32  E-value=0.00025  Score=67.51  Aligned_cols=33  Identities=27%  Similarity=0.383  Sum_probs=30.4

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +|+|||+|++|+++|+.|+++|+ +|+|||+.+.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGV-PVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-cEEEEecccc
Confidence            79999999999999999999999 8999997543

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.32  E-value=0.00023  Score=72.19  Aligned_cols=34  Identities=32%  Similarity=0.526  Sum_probs=31.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      .+|+|||+||+||++|..|++.  |+ +|+|+|+++.
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~-~V~vlEr~~~   36 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAH-EVTVVERNRP   36 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCC-eEEEEecCCC
Confidence            3799999999999999999998  89 8999999874

>PLN02676 polyamine oxidase

Probab=97.30  E-value=0.00033  Score=67.57  Aligned_cols=39  Identities=31%  Similarity=0.478  Sum_probs=34.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ....+|+|||+|++||++|+.|++.|+.+|+|+|+++..
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~   62 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI   62 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence            346689999999999999999999997249999998863

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=97.29  E-value=0.00033  Score=66.57  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=32.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|++||++|+.|++.|. +|+|+||..
T Consensus         4 ~~DVvVVG~G~aGl~AA~~aa~~G~-~V~vlEk~~   37 (466)
T PRK08274          4 MVDVLVIGGGNAALCAALAAREAGA-SVLLLEAAP   37 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            4689999999999999999999999 899999986

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.29  E-value=0.00037  Score=66.73  Aligned_cols=37  Identities=24%  Similarity=0.433  Sum_probs=33.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC-Ccc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT-YDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~-~~~  182 (240)
                      ..+|+|||+||+|+++|..|++.|+ +|+++|+.+ .||
T Consensus         4 ~~DvvVIG~GpaG~~aA~~aa~~G~-~V~lie~~~~~GG   41 (471)
T PRK06467          4 KTQVVVLGAGPAGYSAAFRAADLGL-ETVCVERYSTLGG   41 (471)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCcccc
Confidence            4799999999999999999999999 899999874 444

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.28  E-value=0.00081  Score=63.54  Aligned_cols=74  Identities=19%  Similarity=0.276  Sum_probs=52.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY  223 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~  223 (240)
                      .+++|+|+|+|.+|+++|..|++.|+ +|+++|+.....+.. ....+...++.+..+..     ..+ +..  .+|.||
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~-~~~~l~~~~~~~~~~~~-----~~~-~~~--~~d~vv   73 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKE-ALEELGELGIELVLGEY-----PEE-FLE--GVDLVV   73 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHH-HHHHHHhcCCEEEeCCc-----chh-Hhh--cCCEEE
Confidence            47899999999999999999999999 899999875332211 11234556777665542     212 222  489999


Q ss_pred             Eecc
Q psy16201        224 YSNC  227 (240)
Q Consensus       224 ~s~~  227 (240)
                      .+..
T Consensus        74 ~~~g   77 (450)
T PRK14106         74 VSPG   77 (450)
T ss_pred             ECCC
Confidence            9854

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.27  E-value=0.00032  Score=65.31  Aligned_cols=33  Identities=27%  Similarity=0.387  Sum_probs=29.6

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +|+|||+|.+||+||+.++++|. +|+|+||...
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~-~V~lvek~~~   33 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGA-KVLLVEKGPR   33 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT--EEEEESSSG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcC-eEEEEEeecc
Confidence            58999999999999999999999 8999999986

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.26  E-value=0.00099  Score=63.54  Aligned_cols=73  Identities=16%  Similarity=0.432  Sum_probs=53.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY  223 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~  223 (240)
                      .+++|.|+|.|.+|+++|..|.++|+ .|+++|.......... ...++..|+.+..+..     ..+.+.   .+|.|+
T Consensus        13 ~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~~-~~~l~~~gi~~~~~~~-----~~~~~~---~~dlVV   82 (458)
T PRK01710         13 KNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEEELGEV-SNELKELGVKLVLGEN-----YLDKLD---GFDVIF   82 (458)
T ss_pred             cCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCccchHH-HHHHHhCCCEEEeCCC-----ChHHhc---cCCEEE
Confidence            36799999999999999999999999 7999998764321111 1235667888876542     234443   489999


Q ss_pred             Eec
Q psy16201        224 YSN  226 (240)
Q Consensus       224 ~s~  226 (240)
                      .|.
T Consensus        83 ~Sp   85 (458)
T PRK01710         83 KTP   85 (458)
T ss_pred             ECC
Confidence            984

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.26  E-value=0.00042  Score=66.86  Aligned_cols=36  Identities=19%  Similarity=0.245  Sum_probs=33.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|+.|+++|+.|+++|+ +|.++|+.+.
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rG~-~V~LlEk~d~   40 (502)
T PRK13369          5 ETYDLFVIGGGINGAGIARDAAGRGL-KVLLCEKDDL   40 (502)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-cEEEEECCCC
Confidence            34689999999999999999999999 8999999874

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.25  E-value=0.00069  Score=63.78  Aligned_cols=34  Identities=38%  Similarity=0.568  Sum_probs=30.4

Q ss_pred             CeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~  180 (240)
                      ++|+|||+|++|+++|..|++.|  + +|+|+|+++.
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~-~Vtli~~~~~   36 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKEL-EITVYEKTDI   36 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCC-cEEEEECCCc
Confidence            47999999999999999999875  5 7999999874

>PLN03000 amine oxidase

Probab=97.25  E-value=0.00055  Score=70.12  Aligned_cols=39  Identities=23%  Similarity=0.459  Sum_probs=35.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ...++|+|||+|++||++|+.|.+.|+ +|+|+|+.+..|
T Consensus       182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~-~V~VlE~~~riG  220 (881)
T PLN03000        182 SSKSSVVIVGAGLSGLAAARQLMRFGF-KVTVLEGRKRPG  220 (881)
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCC-cEEEEEccCcCC
Confidence            356899999999999999999999999 799999988754

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.23  E-value=0.00036  Score=72.65  Aligned_cols=35  Identities=23%  Similarity=0.476  Sum_probs=32.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .++|+|||+||+||++|..|++.|+ +|+|+|+.+.
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~-~V~liD~~~~  197 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGA-RVILVDEQPE  197 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Confidence            5689999999999999999999999 8999998764

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.22  E-value=0.00044  Score=67.51  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=32.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|+.|+++|+.|+++|+ +|+|+|+.+.
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~   40 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDI   40 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCC
Confidence            4689999999999999999999999 8999999763

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.21  E-value=0.00047  Score=66.71  Aligned_cols=36  Identities=17%  Similarity=0.240  Sum_probs=33.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|..|+++|+.|+++|+ +|+++|+.+.
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rGl-~V~LvEk~d~   40 (508)
T PRK12266          5 ETYDLLVIGGGINGAGIARDAAGRGL-SVLLCEQDDL   40 (508)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence            34689999999999999999999999 8999999864

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.21  E-value=0.00041  Score=65.31  Aligned_cols=33  Identities=27%  Similarity=0.434  Sum_probs=30.9

Q ss_pred             eEEEECCChhHHHHHHHHHHcC-CCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMG-YDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~~  180 (240)
                      +|+|||+|.+|+++|+.++++| . +|+|+||...
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~-~V~vlEk~~~   34 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAA-NVVLLEKMPV   34 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCc-cEEEEecCCC
Confidence            5899999999999999999999 9 8999999875

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK07121 hypothetical protein; Validated

Probab=97.21  E-value=0.00073  Score=64.89  Aligned_cols=36  Identities=17%  Similarity=0.318  Sum_probs=33.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|.+||++|+.+++.|. +|+|+||...
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~-~VillEK~~~   54 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGA-RVLVLERAAG   54 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence            35689999999999999999999999 8999999874

>PLN02697 lycopene epsilon cyclase

Probab=97.18  E-value=0.00053  Score=66.91  Aligned_cols=33  Identities=27%  Similarity=0.646  Sum_probs=30.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ..+|+|||+||+|+++|..|++.|+ +|.++|+.
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl-~V~LIe~~  140 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGL-NVGLIGPD  140 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCC-cEEEecCc
Confidence            4689999999999999999999999 79999975

>PLN02661 Putative thiazole synthesis

Probab=97.18  E-value=0.00045  Score=64.18  Aligned_cols=36  Identities=36%  Similarity=0.611  Sum_probs=32.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|++|+++|+.|++. |+ +|+|+|+...
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~-kV~viEk~~~  127 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNV-KVAIIEQSVS  127 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCC-eEEEEecCcc
Confidence            356999999999999999999986 89 8999999875

>PRK06996 hypothetical protein; Provisional

Probab=97.15  E-value=0.00046  Score=64.22  Aligned_cols=36  Identities=33%  Similarity=0.640  Sum_probs=31.6

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcC----CCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMG----YDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G----~~~V~v~e~~~  179 (240)
                      ....+|+|||+||+|+++|..|++.|    . +|+++|+.+
T Consensus         9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~-~v~l~e~~~   48 (398)
T PRK06996          9 APDFDIAIVGAGPVGLALAGWLARRSATRAL-SIALIDARE   48 (398)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCcCCc-eEEEecCCC
Confidence            34569999999999999999999987    4 699999975

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.14  E-value=0.00084  Score=62.57  Aligned_cols=60  Identities=17%  Similarity=0.200  Sum_probs=46.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc-------cccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV-------TNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~-------~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .+++|+|||+|+.|+.+|..|++.|. +|+++++.+....       .....+.+++.|++++++..+
T Consensus       143 ~~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V  209 (396)
T PRK09754        143 PERSVVIVGAGTIGLELAASATQRRC-KVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAI  209 (396)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCee
Confidence            36799999999999999999999999 7999998775321       112234456789999887654

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.14  E-value=0.00041  Score=64.44  Aligned_cols=33  Identities=30%  Similarity=0.564  Sum_probs=29.9

Q ss_pred             eEEEECCChhHHHHHHHH--HHcCCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFL--SRMGYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L--~~~G~~~V~v~e~~~~  180 (240)
                      +|+|||+||+|+++|+.|  ++.|. +|.|+|+...
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~   35 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPK   35 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCcc
Confidence            589999999999999999  77899 8999998764

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]

Probab=97.14  E-value=0.00081  Score=65.46  Aligned_cols=80  Identities=19%  Similarity=0.520  Sum_probs=60.4

Q ss_pred             ccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhcccc
Q psy16201         27 HTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLY  106 (240)
Q Consensus        27 ~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~  106 (240)
                      ....+..+.++++.+|.+|+  -|+.+||-..+|++-+...++|+|.+- +-+.+      .| .-|-   .||+.|+++
T Consensus       387 ~~~p~~ee~~e~a~kc~~cG--~C~~~CP~~l~i~eam~~A~~Gd~~~l-~~l~d------~C-~~C~---rCEq~Cpk~  453 (772)
T COG1152         387 KEKPDDEEFMEYARKCTYCG--NCMRACPNELDIPEAMEYAAKGDFSKL-EDLHD------VC-IGCG---RCEQVCPKN  453 (772)
T ss_pred             cCCCChHHHHHHHHhccccc--chhccCCcccchHHHHHHhhcCChHHH-HHHHH------Hh-hhhh---hhhhhCccc
Confidence            34557889999999999999  699999999999999999999999754 33332      22 3454   699999975


Q ss_pred             ccCCCccccchhhHHHHH
Q psy16201        107 AAEEGPINIGGLQQFATE  124 (240)
Q Consensus       107 ~~~~~pV~I~~l~r~~~~  124 (240)
                      .    || +..+++....
T Consensus       454 i----pi-~nm~~~a~~~  466 (772)
T COG1152         454 I----PI-LNMIEKAAQK  466 (772)
T ss_pred             C----ch-hhHHHHHHHH
Confidence            3    33 4555555443

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=97.12  E-value=0.00066  Score=65.62  Aligned_cols=36  Identities=28%  Similarity=0.355  Sum_probs=33.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|.+|+++|+.+++.|. +|+|+||...
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga-~VivlEK~~~   95 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGM-NPVILEKMPV   95 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCC
Confidence            45689999999999999999999999 8999999874

>TIGR00275 flavoprotein, HI0933 family

Probab=97.12  E-value=0.00034  Score=65.58  Aligned_cols=31  Identities=35%  Similarity=0.494  Sum_probs=29.2

Q ss_pred             EEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        149 ALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       149 aViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +|||+|++||++|..|+++|+ +|+|+|+++.
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~-~V~llEk~~~   31 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGL-SVLLLEKNKK   31 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCC-cEEEEecCcc
Confidence            599999999999999999999 8999999875

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.12  E-value=0.00059  Score=65.16  Aligned_cols=36  Identities=31%  Similarity=0.584  Sum_probs=32.7

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ++|+|||+|++|+++|..|+++|. +|+++|+...+|
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~-~v~~~e~~~~gG   37 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGA-DVTVIERDGLGG   37 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-eEEEEEccCCCC
Confidence            479999999999999999999999 799999877544

>PTZ00058 glutathione reductase; Provisional

Probab=97.12  E-value=0.00064  Score=66.78  Aligned_cols=38  Identities=18%  Similarity=0.227  Sum_probs=34.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ...+|+|||+||+|+++|..+++.|. +|.++|+...||
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~-~ValIEk~~~GG   84 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKA-KVALVEKDYLGG   84 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCC-eEEEEecccccc
Confidence            45689999999999999999999999 899999876555

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.11  E-value=0.00076  Score=61.58  Aligned_cols=59  Identities=17%  Similarity=0.254  Sum_probs=47.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcccc-------ccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVT-------NVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~-------~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|+|+|+.||.+|.+|+++|+ +|+++|..+..+..       ......++..|++++++..+
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~-~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~  201 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGK-KVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKV  201 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCce
Confidence            4799999999999999999999999 89999999864321       12335667888888887754

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.10  E-value=0.00055  Score=65.97  Aligned_cols=32  Identities=28%  Similarity=0.516  Sum_probs=29.9

Q ss_pred             eEEEECCChhHHHHHHHHHHc--CCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRM--GYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~  179 (240)
                      +|+|||+|++|+++|+.|++.  |. +|+|+|+..
T Consensus         2 DVvIIGgGI~G~a~A~~L~~~~~g~-~V~VlEk~~   35 (483)
T TIGR01320         2 DVVLIGAGIMSATLGVLLRELEPNW-SITLIERLD   35 (483)
T ss_pred             cEEEECchHHHHHHHHHHHHhCCCC-eEEEEEcCC
Confidence            699999999999999999997  89 899999965

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK14727 putative mercuric reductase; Provisional

Probab=97.09  E-value=0.0007  Score=64.90  Aligned_cols=39  Identities=26%  Similarity=0.312  Sum_probs=34.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC-CCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN-TYDM  182 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~-~~~~  182 (240)
                      ....+|+|||+|++|+++|..|++.|. +|+++|+. ..||
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~-~v~~ie~~~~~GG   53 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGA-RVTIIEGADVIGG   53 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEEccCccee
Confidence            345789999999999999999999999 89999987 4444

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.08  E-value=0.00078  Score=64.45  Aligned_cols=32  Identities=22%  Similarity=0.469  Sum_probs=30.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEK  177 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~  177 (240)
                      ..+|+|||+||+|+++|.++++.|. +|.|+|+
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~-~v~lie~   35 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGL-KVACIEA   35 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCC-eEEEEec
Confidence            4689999999999999999999999 8999998

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.06  E-value=0.0012  Score=61.13  Aligned_cols=82  Identities=11%  Similarity=0.043  Sum_probs=51.9

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCCC-----ccccc-----c---------chHHHhccCceEEeCCccC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY-----DMVTN-----V---------SPRIVKGTTSRHLYGPEQG  205 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~~-----~~~~~-----~---------~~~~~~~~gv~~~~~~~vg  205 (240)
                      ++|+|||+|++|+++|..|++.+.+ +|+|+++.+.     +.+..     .         ...+.+..++++.++..+-
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   82 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT   82 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence            5899999999999999999886543 7999988663     11100     0         1123356688888776542


Q ss_pred             c-c-----cCHHHHHhhcCCcEEEEecccc
Q psy16201        206 S-F-----LNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       206 ~-~-----i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      . +     +..+.-  .-.||.+++++...
T Consensus        83 ~id~~~~~v~~~~~--~~~yd~LVlATG~~  110 (377)
T PRK04965         83 DIDAEAQVVKSQGN--QWQYDKLVLATGAS  110 (377)
T ss_pred             EEECCCCEEEECCe--EEeCCEEEECCCCC
Confidence            2 1     111110  11499999997654

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.04  E-value=0.00068  Score=63.02  Aligned_cols=32  Identities=25%  Similarity=0.306  Sum_probs=29.8

Q ss_pred             eEEEECCChhHHHHHHHHHHc--CCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRM--GYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~  179 (240)
                      +|+|||+|++|+++|+.|++.  |+ +|.++|+.+
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~-~V~lle~~~   34 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDF-RIRVIEAGR   34 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCC
Confidence            589999999999999999987  99 799999976

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.01  E-value=0.0012  Score=62.21  Aligned_cols=59  Identities=15%  Similarity=0.341  Sum_probs=45.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|++|+.+|..|++.|. +|+++++.+...      ......+.++..|+++.++..+
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~-~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V  221 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGS-KVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHT  221 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEE
Confidence            5689999999999999999999999 799999876421      1122334567789998877543

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=97.01  E-value=0.00087  Score=65.80  Aligned_cols=35  Identities=29%  Similarity=0.542  Sum_probs=32.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++||++|+.++++|+ +|+|+||...
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~-~v~llEk~~~   43 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGL-DVVVLEKEPV   43 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCC-eEEEEecCCC
Confidence            5689999999999999999999999 8999999874

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.01  E-value=0.00082  Score=64.28  Aligned_cols=34  Identities=32%  Similarity=0.557  Sum_probs=31.4

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ++|+|||+|.+||++|..+++.|. +|+|+||...
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~-~V~liek~~~   35 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGF-DVTIIGPGIK   35 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence            589999999999999999999999 8999999753

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.01  E-value=0.0012  Score=62.91  Aligned_cols=59  Identities=20%  Similarity=0.380  Sum_probs=45.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|++|+.+|..|++.|. +|+++|+.+...      +.....+.++..|++++++..+
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~-~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v  244 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGV-EVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKV  244 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEE
Confidence            4799999999999999999999999 799999876421      1122334567789998887643

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=97.00  E-value=0.0016  Score=62.22  Aligned_cols=71  Identities=18%  Similarity=0.290  Sum_probs=51.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEE
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYY  224 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~  224 (240)
                      +++|+|+|-|.+|+++|.+|.++|+ .|+++|.++...  +.....+...++++..+.     ...+++.   .+|.||+
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~-~v~v~D~~~~~~--~~~~~~~~~~~i~~~~g~-----~~~~~~~---~~d~vV~   75 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGA-EVTVSDDRPAPE--GLAAQPLLLEGIEVELGS-----HDDEDLA---EFDLVVK   75 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCC-eEEEEcCCCCcc--chhhhhhhccCceeecCc-----cchhccc---cCCEEEE
Confidence            8899999999999999999999999 899999777652  111122335677777655     2233333   4899999


Q ss_pred             ec
Q psy16201        225 SN  226 (240)
Q Consensus       225 s~  226 (240)
                      |.
T Consensus        76 SP   77 (448)
T COG0771          76 SP   77 (448)
T ss_pred             CC
Confidence            83

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.99  E-value=0.00092  Score=62.30  Aligned_cols=85  Identities=11%  Similarity=0.173  Sum_probs=54.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCCCc-----cccc-------------cchHHHhccCceEEeCCccC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTYD-----MVTN-------------VSPRIVKGTTSRHLYGPEQG  205 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~~~-----~~~~-------------~~~~~~~~~gv~~~~~~~vg  205 (240)
                      .++|+|||+|++|+++|..|++.|++ +|+++++....     .+..             ....++...+++++++..+-
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            46899999999999999999999864 79999987531     1110             01233456688888775431


Q ss_pred             c------ccCHHHHHhhcCCcEEEEecccch
Q psy16201        206 S------FLNIELISEKTAYQWVYYSNCKVL  230 (240)
Q Consensus       206 ~------~i~~e~L~~~s~~d~V~~s~~~~~  230 (240)
                      .      .+.++.=.. -.||.+++++....
T Consensus        83 ~id~~~~~v~~~~g~~-~~yd~LViATGs~~  112 (396)
T PRK09754         83 TLGRDTRELVLTNGES-WHWDQLFIATGAAA  112 (396)
T ss_pred             EEECCCCEEEECCCCE-EEcCEEEEccCCCC
Confidence            1      111111001 14899999976554

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=96.98  E-value=0.00096  Score=64.57  Aligned_cols=36  Identities=31%  Similarity=0.496  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|+.|+++|++|++.  |. +|+|+||...
T Consensus         4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~-~V~VlEk~~~   41 (494)
T PRK05257          4 SKTDVVLIGGGIMSATLGTLLKELEPEW-SITMFERLDG   41 (494)
T ss_pred             ccceEEEECcHHHHHHHHHHHHHhCCCC-eEEEEEcCCc
Confidence            356899999999999999999985  78 8999999763

>PLN02507 glutathione reductase

Probab=96.97  E-value=0.0011  Score=64.08  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=31.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK  177 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~  177 (240)
                      ....+|+|||+||+|+++|..+++.|. +|.++|+
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~-~V~liE~   56 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGA-KVGICEL   56 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence            346789999999999999999999999 8999996

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=96.97  E-value=0.001  Score=66.16  Aligned_cols=35  Identities=14%  Similarity=0.324  Sum_probs=32.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|+.|+++|+.|+++|+ +|+++|+.+.
T Consensus        71 ~~DVvVIGGGi~Ga~~A~~lA~rGl-~V~LvE~~d~  105 (627)
T PLN02464         71 PLDVLVVGGGATGAGVALDAATRGL-RVGLVEREDF  105 (627)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-EEEEEecccc
Confidence            4689999999999999999999999 8999999864

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.97  E-value=0.0036  Score=53.76  Aligned_cols=74  Identities=11%  Similarity=0.161  Sum_probs=50.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV  222 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V  222 (240)
                      -.+++|+|||+|..|..-+..|.+.|. +|+|++......+    ....+...+.+..+.     ...+++.   +++.|
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~~l----~~l~~~~~i~~~~~~-----~~~~dl~---~~~lV   73 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELESEL----TLLAEQGGITWLARC-----FDADILE---GAFLV   73 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCHHH----HHHHHcCCEEEEeCC-----CCHHHhC---CcEEE
Confidence            457899999999999999999999999 8999987644321    122222344544333     3444443   48999


Q ss_pred             EEecccc
Q psy16201        223 YYSNCKV  229 (240)
Q Consensus       223 ~~s~~~~  229 (240)
                      |.++.+.
T Consensus        74 i~at~d~   80 (205)
T TIGR01470        74 IAATDDE   80 (205)
T ss_pred             EECCCCH
Confidence            9886553

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=96.96  E-value=0.0014  Score=62.83  Aligned_cols=61  Identities=13%  Similarity=0.262  Sum_probs=48.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCccC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQG  205 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~vg  205 (240)
                      -.++++|||+|+.|+..|..+++.|. +|||+|+.+...      +.....+.+++.|+.++++..+.
T Consensus       172 lP~~lvIiGgG~IGlE~a~~~~~LG~-~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~  238 (454)
T COG1249         172 LPKSLVIVGGGYIGLEFASVFAALGS-KVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVT  238 (454)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEE
Confidence            45789999999999999999999999 799999998632      33344456666778888877543

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.96  E-value=0.00093  Score=61.16  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=28.6

Q ss_pred             eEEEECCChhHHHHHHHHHHc---CCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRM---GYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~---G~~~V~v~e~~~~  180 (240)
                      +|+|||+|++|+.+|..|.++   ++ +|+|+|+++.
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~-~I~li~~~~~   36 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGV-RVTLINPSST   36 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCC-EEEEECCCCC
Confidence            589999999999999999654   57 7999998874

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=96.95  E-value=0.0014  Score=60.08  Aligned_cols=35  Identities=20%  Similarity=0.278  Sum_probs=31.9

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      .+++|||+|.+|+..|..|+++|. +|.|+||++..
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk-~VLIvekR~HI   36 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGK-RVLIVEKRNHI   36 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCC-EEEEEeccccC
Confidence            468999999999999999999999 89999998863

>PTZ00052 thioredoxin reductase; Provisional

Probab=96.94  E-value=0.0009  Score=64.61  Aligned_cols=32  Identities=16%  Similarity=0.366  Sum_probs=30.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEK  177 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~  177 (240)
                      ..+|+|||+||+|+++|..|+++|. +|+|+|+
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~-~V~lie~   36 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGK-KVALFDY   36 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-eEEEEec
Confidence            4689999999999999999999999 8999996

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.93  E-value=0.0019  Score=61.70  Aligned_cols=60  Identities=15%  Similarity=0.231  Sum_probs=46.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|+.|+..|..|++.|. +|+++|+.+...      ......+.++..|++++++..+
T Consensus       173 ~~~~vvIIGgG~ig~E~A~~l~~~G~-~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V  238 (466)
T PRK06115        173 VPKHLVVIGAGVIGLELGSVWRRLGA-QVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKV  238 (466)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEE
Confidence            35799999999999999999999999 799999876421      1222334566789998887643

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=96.92  E-value=0.0011  Score=64.88  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +|+|||+|.+||+||..+++.|. +|+|+||...
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~-~V~lleK~~~   33 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGL-NTAVISKVYP   33 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCC-cEEEEeccCC
Confidence            58999999999999999999999 8999999764

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.91  E-value=0.0019  Score=59.70  Aligned_cols=60  Identities=15%  Similarity=0.181  Sum_probs=46.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .+++|+|||+|++|+.+|..|++.|. +|+++++.+...       +.....+.+++.|+++.++..+
T Consensus       140 ~~~~vvViGgG~~g~e~A~~L~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v  206 (377)
T PRK04965        140 DAQRVLVVGGGLIGTELAMDLCRAGK-AVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQL  206 (377)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeE
Confidence            46799999999999999999999999 799999876422       1112334557788888876644

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=96.91  E-value=0.0012  Score=63.84  Aligned_cols=34  Identities=18%  Similarity=0.356  Sum_probs=31.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+| +||++|+.+++.|. +|+|+||...
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~-~V~vlEk~~~   40 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGL-SVALVEATDK   40 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCC-cEEEEecCCC
Confidence            5689999999 99999999999999 8999999874

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=96.90  E-value=0.0012  Score=65.53  Aligned_cols=33  Identities=24%  Similarity=0.389  Sum_probs=31.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ..+|+|||+|++|++||+.+++.|. +|.++|+.
T Consensus         4 ~yDVIVVGGGpAG~eAA~~aAR~G~-kV~LiE~~   36 (618)
T PRK05192          4 EYDVIVVGGGHAGCEAALAAARMGA-KTLLLTHN   36 (618)
T ss_pred             cceEEEECchHHHHHHHHHHHHcCC-cEEEEecc
Confidence            4689999999999999999999999 89999987

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.89  E-value=0.0019  Score=61.60  Aligned_cols=59  Identities=24%  Similarity=0.299  Sum_probs=46.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|+.|+.+|..|++.|. +|+++|+.+...      +.....+.++..|+++.++..+
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~-~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v  236 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGV-DVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKV  236 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC-eEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEE
Confidence            4799999999999999999999999 799999876422      2223345567789998887644

>PRK06370 mercuric reductase; Validated

Probab=96.87  E-value=0.002  Score=61.34  Aligned_cols=59  Identities=20%  Similarity=0.310  Sum_probs=46.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|+.|+.+|..|++.|. +|+++++.+...      ......+.++..|+++.++..+
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~-~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V  235 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGS-EVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAEC  235 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence            5799999999999999999999999 799999877422      1223344567788998887543

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=96.87  E-value=0.002  Score=61.04  Aligned_cols=59  Identities=19%  Similarity=0.314  Sum_probs=45.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|++|+.+|..|++.|. +|+++|+.+...      +.....+.+++.|+++.++..+
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v  234 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGS-KVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKV  234 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence            4799999999999999999999999 799999877421      1222334556778888887644

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.87  E-value=0.002  Score=61.12  Aligned_cols=59  Identities=19%  Similarity=0.298  Sum_probs=45.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|++|+.+|..|++.|. +|+++++.+...      +.....+.++..|+++.++..+
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~-~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V  236 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGA-EVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKA  236 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence            4799999999999999999999999 799999877532      1122334566788988887643

>TIGR02053 MerA mercuric reductase

Probab=96.86  E-value=0.0018  Score=61.54  Aligned_cols=59  Identities=15%  Similarity=0.291  Sum_probs=45.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|++|+.+|..|++.|. +|+++++.+...      +.....+.++..|++++++..+
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~-~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V  230 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGS-EVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQV  230 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEE
Confidence            4799999999999999999999999 799999886421      1122334566788988887643

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.85  E-value=0.002  Score=61.06  Aligned_cols=59  Identities=15%  Similarity=0.059  Sum_probs=46.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|+.|+..|..|++.|. +|+++++.+...      +.....+.+++.|++++++..+
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v  212 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGL-HPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEI  212 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-cEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeE
Confidence            4799999999999999999999999 799999876421      2223345667789999887654

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=96.85  E-value=0.002  Score=61.29  Aligned_cols=58  Identities=9%  Similarity=0.151  Sum_probs=45.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      .++|+|||+|.+|+..|..|++.|. +|+++++.+...      +.....+.++..|+++.++..
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~  229 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGS-ETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSK  229 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCE
Confidence            4799999999999999999999999 799999886532      112233456678888887753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK09897 hypothetical protein; Provisional

Probab=96.85  E-value=0.0015  Score=63.80  Aligned_cols=34  Identities=29%  Similarity=0.487  Sum_probs=29.9

Q ss_pred             CeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~  180 (240)
                      ++|+|||+|++|+++|..|.+.+  . +|+|||+...
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l-~V~lfEp~~~   37 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPL-SISIFEQADE   37 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCC-cEEEEecCCC
Confidence            48999999999999999998864  5 7999999764

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=96.81  E-value=0.0024  Score=60.83  Aligned_cols=59  Identities=17%  Similarity=0.302  Sum_probs=45.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|++|+.+|..|.+.|. +|+++++.+...      +.....+.+++.|++++++..+
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V  234 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGT-KVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAAL  234 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEE
Confidence            4689999999999999999999999 799999876432      1122334567789998887644

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.80  E-value=0.0017  Score=64.09  Aligned_cols=34  Identities=18%  Similarity=0.317  Sum_probs=31.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|+|||+|.+||+||..+++.|. +|+|+||...
T Consensus         4 ~DVlVVG~G~AGl~AAi~Aa~~G~-~V~lieK~~~   37 (589)
T PRK08641          4 GKVIVVGGGLAGLMATIKAAEAGV-HVDLFSLVPV   37 (589)
T ss_pred             ccEEEECchHHHHHHHHHHHHcCC-cEEEEEccCC
Confidence            389999999999999999999999 8999998764

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=96.78  E-value=0.0026  Score=60.35  Aligned_cols=60  Identities=10%  Similarity=0.187  Sum_probs=45.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|+.|+..|..|++.|. +|+++++.+...      +.....+.++..|+++.++..+
T Consensus       174 ~~~~v~IiGgG~~g~E~A~~l~~~g~-~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v  239 (461)
T PRK05249        174 LPRSLIIYGAGVIGCEYASIFAALGV-KVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEV  239 (461)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEE
Confidence            35799999999999999999999999 799999887422      1122334556778888776543

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.78  E-value=0.0043  Score=59.85  Aligned_cols=69  Identities=17%  Similarity=0.230  Sum_probs=50.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV  222 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V  222 (240)
                      ..+++|+|+|.|.+|++++..|.+.|+ +|+++|.....      ...+++.|+.+..+.     ...+.+.   .+|.|
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~------~~~l~~~g~~~~~~~-----~~~~~l~---~~D~V   74 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDA------LRPHAERGVATVSTS-----DAVQQIA---DYALV   74 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHH------HHHHHhCCCEEEcCc-----chHhHhh---cCCEE
Confidence            357899999999999999999999999 79999965321      122455687766433     2333343   38999


Q ss_pred             EEec
Q psy16201        223 YYSN  226 (240)
Q Consensus       223 ~~s~  226 (240)
                      |.|.
T Consensus        75 V~Sp   78 (488)
T PRK03369         75 VTSP   78 (488)
T ss_pred             EECC
Confidence            9995

>PLN02546 glutathione reductase

Probab=96.77  E-value=0.002  Score=63.31  Aligned_cols=33  Identities=24%  Similarity=0.403  Sum_probs=30.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEK  177 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~  177 (240)
                      .+.+|+|||+||+|+.+|..++++|. +|.++|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~-~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGA-SAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence            35789999999999999999999999 8999996

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.77  E-value=0.0017  Score=64.56  Aligned_cols=35  Identities=23%  Similarity=0.376  Sum_probs=32.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||+||..+++.|. +|+|+||...
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~-~V~lieK~~~   42 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGL-RVAVVCKSLF   42 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCC-CEEEEeccCC
Confidence            4589999999999999999999999 8999999764

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=96.77  E-value=0.0026  Score=59.69  Aligned_cols=59  Identities=15%  Similarity=0.214  Sum_probs=45.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      +++|+|||+|++|+.+|..|++.|. +|+++++.+...       +.....+.++..|+++.++..+
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v  202 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGK-NVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEV  202 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-cEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence            5799999999999999999999999 799999876431       1222334567788988876643

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.76  E-value=0.0071  Score=57.28  Aligned_cols=69  Identities=14%  Similarity=0.223  Sum_probs=49.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhc--cCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKG--TTSRHLYGPEQGSFLNIELISEKTAYQWV  222 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~--~gv~~~~~~~vg~~i~~e~L~~~s~~d~V  222 (240)
                      +++|+|+|.|.+|+++|..|+++|+ .|+++|.......    ...++.  .|+.+..+..     ..+ +..  .+|.|
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~~~~----~~~l~~~~~gi~~~~g~~-----~~~-~~~--~~d~v   71 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELKPER----VAQIGKMFDGLVFYTGRL-----KDA-LDN--GFDIL   71 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCchh----HHHHhhccCCcEEEeCCC-----CHH-HHh--CCCEE
Confidence            6799999999999999999999999 7999997665321    112333  4777776542     222 222  49999


Q ss_pred             EEec
Q psy16201        223 YYSN  226 (240)
Q Consensus       223 ~~s~  226 (240)
                      ++|.
T Consensus        72 v~sp   75 (445)
T PRK04308         72 ALSP   75 (445)
T ss_pred             EECC
Confidence            9995

>PRK07804 L-aspartate oxidase; Provisional

Probab=96.76  E-value=0.0017  Score=63.37  Aligned_cols=35  Identities=23%  Similarity=0.404  Sum_probs=32.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||.||..+++.|. +|+|+||...
T Consensus        16 ~~DVlVIG~G~AGl~AAi~aae~G~-~VilleK~~~   50 (541)
T PRK07804         16 AADVVVVGSGVAGLTAALAARRAGR-RVLVVTKAAL   50 (541)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCC-eEEEEEccCC
Confidence            5689999999999999999999999 8999999874

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.75  E-value=0.0041  Score=59.20  Aligned_cols=58  Identities=12%  Similarity=0.154  Sum_probs=43.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc--cccchHHHhccCceEEeCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV--TNVSPRIVKGTTSRHLYGP  202 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~--~~~~~~~~~~~gv~~~~~~  202 (240)
                      .+++|+|||+|..|+.+|..|++.|. +|+++++......  +....+.+++.|+.|+++.
T Consensus       271 ~gk~VvVIGgG~~a~d~A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~  330 (449)
T TIGR01316       271 AGKSVVVIGGGNTAVDSARTALRLGA-EVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLC  330 (449)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-EEEEEeecCcccCCCCHHHHHHHHhCCCEEEecc
Confidence            45899999999999999999999999 7999998754221  1111234567788887654

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.74  E-value=0.0062  Score=57.49  Aligned_cols=73  Identities=14%  Similarity=0.338  Sum_probs=50.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY  223 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~  223 (240)
                      .+++|+|+|+|.+|+++|..|++.|+ +|++.|+...... . ....++..|+.+..+.     ...+.+..  .+|.||
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~~-~-~~~~l~~~g~~~~~~~-----~~~~~~~~--~~d~vV   73 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSEN-P-EAQELLEEGIKVICGS-----HPLELLDE--DFDLMV   73 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccch-h-HHHHHHhcCCEEEeCC-----CCHHHhcC--cCCEEE
Confidence            36789999999999999999999999 7999997653211 1 1233556687776544     12232222  388888


Q ss_pred             Eec
Q psy16201        224 YSN  226 (240)
Q Consensus       224 ~s~  226 (240)
                      .|.
T Consensus        74 ~s~   76 (447)
T PRK02472         74 KNP   76 (447)
T ss_pred             ECC
Confidence            885

>PLN02976 amine oxidase

Probab=96.74  E-value=0.002  Score=68.96  Aligned_cols=38  Identities=34%  Similarity=0.622  Sum_probs=34.2

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ...++|+|||+|++|+++|+.|.+.|+ +|+|||+....
T Consensus       691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~-~V~VlEa~~~v  728 (1713)
T PLN02976        691 VDRKKIIVVGAGPAGLTAARHLQRQGF-SVTVLEARSRI  728 (1713)
T ss_pred             CCCCcEEEECchHHHHHHHHHHHHCCC-cEEEEeeccCC
Confidence            446789999999999999999999999 89999998753

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=96.72  E-value=0.0018  Score=63.15  Aligned_cols=34  Identities=24%  Similarity=0.474  Sum_probs=32.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|.+||++|..+++.|. +|+|+||..
T Consensus         4 ~~DVvVVG~G~AGl~AAl~Aa~~G~-~VivlEK~~   37 (549)
T PRK12834          4 DADVIVVGAGLAGLVAAAELADAGK-RVLLLDQEN   37 (549)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            4589999999999999999999999 799999987

>TIGR02462 pyranose_ox pyranose oxidase

Probab=96.72  E-value=0.0019  Score=63.29  Aligned_cols=33  Identities=18%  Similarity=0.370  Sum_probs=31.2

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +|+|||+||+|+++|+.|+++|+ +|.++|+...
T Consensus         2 dv~ivg~Gp~G~~~a~~l~~~g~-~v~~~e~~~~   34 (544)
T TIGR02462         2 DVFIAGSGPIGCTYARLCVDAGL-KVAMVEIGAA   34 (544)
T ss_pred             cEEEECCchHHHHHHHHHHHCCC-eEEEEeccCc
Confidence            79999999999999999999999 8999999875

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK12839 hypothetical protein; Provisional

Probab=96.72  E-value=0.0024  Score=62.79  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=33.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ....+|+|||+|.+|+++|+.|+++|. +|+|+|+...
T Consensus         6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~-~v~~iek~~~   42 (572)
T PRK12839          6 THTYDVVVVGSGAGGLSAAVAAAYGGA-KVLVVEKAST   42 (572)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            446789999999999999999999999 7999999764

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=96.71  E-value=0.0023  Score=62.11  Aligned_cols=36  Identities=19%  Similarity=0.418  Sum_probs=32.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~  179 (240)
                      ....+|+|||+|++|+++|+.|++.  |. +|+|+||.+
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~-~V~vlEr~~   41 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDW-NIEVVERLD   41 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCC-eEEEEEcCC
Confidence            4456899999999999999999998  88 899999944

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.71  E-value=0.0032  Score=60.97  Aligned_cols=60  Identities=18%  Similarity=0.186  Sum_probs=45.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhc-cCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKG-TTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~-~gv~~~~~~~v  204 (240)
                      .+++|+|||+|+.|+.+|..|++.|. +|+++++.+.........+.++. .|+.+.++..+
T Consensus       351 ~~k~VvViGgG~~g~E~A~~L~~~g~-~Vtli~~~~~l~~~~~l~~~l~~~~gV~i~~~~~v  411 (515)
T TIGR03140       351 KGKDVAVIGGGNSGIEAAIDLAGIVR-HVTVLEFADELKADKVLQDKLKSLPNVDILTSAQT  411 (515)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCc-EEEEEEeCCcCChhHHHHHHHhcCCCCEEEECCee
Confidence            46899999999999999999999999 79999987654322223344444 58888887643

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.71  E-value=0.0021  Score=63.02  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=32.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|..+++.|. +|+|+||...
T Consensus         7 ~~DvvVvG~G~aG~~aA~~aa~~G~-~v~llEk~~~   41 (557)
T PRK07843          7 EYDVVVVGSGAAGMVAALTAAHRGL-STVVVEKAPH   41 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            4689999999999999999999999 8999999764

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.70  E-value=0.0038  Score=54.77  Aligned_cols=59  Identities=14%  Similarity=0.311  Sum_probs=44.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhcc-CceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGT-TSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~-gv~~~~~~~  203 (240)
                      .+++|+|||+|++|+..|..|++.+. +|+++++.+.........+.+++. ++++.++..
T Consensus       140 ~~~~v~ViG~G~~~~e~a~~l~~~~~-~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~~~~~  199 (300)
T TIGR01292       140 KNKEVAVVGGGDSAIEEALYLTRIAK-KVTLVHRRDKFRAEKILLDRLRKNPNIEFLWNST  199 (300)
T ss_pred             CCCEEEEECCChHHHHHHHHHHhhcC-EEEEEEeCcccCcCHHHHHHHHhCCCeEEEeccE
Confidence            46799999999999999999999999 799999876432222233445555 888876653

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.70  E-value=0.005  Score=59.06  Aligned_cols=71  Identities=11%  Similarity=-0.003  Sum_probs=48.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY  223 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~  223 (240)
                      .+++|+|+|.|.+|.++|..|.+.|+ +|+++|.+.......  ...++. ++.+.++.     .+.+.+.   .+|.||
T Consensus         7 ~~~~v~v~G~G~sG~~~~~~l~~~g~-~v~~~d~~~~~~~~~--~~~l~~-~~~~~~~~-----~~~~~~~---~~d~vV   74 (468)
T PRK04690          7 EGRRVALWGWGREGRAAYRALRAHLP-AQALTLFCNAVEARE--VGALAD-AALLVETE-----ASAQRLA---AFDVVV   74 (468)
T ss_pred             CCCEEEEEccchhhHHHHHHHHHcCC-EEEEEcCCCcccchH--HHHHhh-cCEEEeCC-----CChHHcc---CCCEEE
Confidence            37899999999999999999999999 799999765422111  112433 44444443     2334343   389999


Q ss_pred             Eec
Q psy16201        224 YSN  226 (240)
Q Consensus       224 ~s~  226 (240)
                      +|.
T Consensus        75 ~Sp   77 (468)
T PRK04690         75 KSP   77 (468)
T ss_pred             ECC
Confidence            984

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.70  E-value=0.0022  Score=63.28  Aligned_cols=35  Identities=20%  Similarity=0.395  Sum_probs=32.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||++|+.+++.|. +|+|+||...
T Consensus        11 ~~DVvVVG~G~AGl~AA~~aae~G~-~VivlEk~~~   45 (584)
T PRK12835         11 EVDVLVVGSGGGGMTAALTAAARGL-DTLVVEKSAH   45 (584)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCC-cEEEEEcCCC
Confidence            5689999999999999999999999 8999999874

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.69  E-value=0.0059  Score=58.60  Aligned_cols=70  Identities=16%  Similarity=0.265  Sum_probs=50.7

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV  222 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V  222 (240)
                      -.+++|.|+|.|.+|+++|..|.++|+ .|+++|+....     ....++..|+.+..+.     ...+.+.   .+|.|
T Consensus        13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~-----~~~~l~~~gi~~~~~~-----~~~~~~~---~~d~v   78 (473)
T PRK00141         13 ELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNETA-----RHKLIEVTGVADISTA-----EASDQLD---SFSLV   78 (473)
T ss_pred             ccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCChHH-----HHHHHHhcCcEEEeCC-----CchhHhc---CCCEE
Confidence            456789999999999999999999999 89999965322     1223455688877643     1223332   38999


Q ss_pred             EEec
Q psy16201        223 YYSN  226 (240)
Q Consensus       223 ~~s~  226 (240)
                      |+|.
T Consensus        79 V~Sp   82 (473)
T PRK00141         79 VTSP   82 (473)
T ss_pred             EeCC
Confidence            9984

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=96.68  E-value=0.0033  Score=60.16  Aligned_cols=59  Identities=22%  Similarity=0.292  Sum_probs=45.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|+.|+.+|..|++.|. +|+++++.+...      +.....+.++..|+++.++..+
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~-~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v  247 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGA-EVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKI  247 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEE
Confidence            5799999999999999999999999 799999876421      1122234556778888877543

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=96.67  E-value=0.0022  Score=62.20  Aligned_cols=35  Identities=17%  Similarity=0.278  Sum_probs=31.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMG--YDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~  179 (240)
                      ...+|+|||+|+.|+++|++|++.+  . +|+|+||..
T Consensus        44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~-~V~VlEk~~   80 (497)
T PTZ00383         44 DVYDVVIVGGGVTGTALFYTLSKFTNLK-KIALIERRS   80 (497)
T ss_pred             CcccEEEECccHHHHHHHHHHHhhCCCC-EEEEEecCc
Confidence            4579999999999999999999964  6 799999975

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.67  E-value=0.0023  Score=60.64  Aligned_cols=34  Identities=32%  Similarity=0.590  Sum_probs=30.2

Q ss_pred             CeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      ++|+|||+|++|+++|..|++.  ++ +|+++|+.+.
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~-~I~li~~~~~   37 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKES-DIIIFEKDRD   37 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCC-CEEEEECCCC
Confidence            4899999999999999999887  57 7999999863

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.66  E-value=0.0022  Score=63.24  Aligned_cols=35  Identities=17%  Similarity=0.410  Sum_probs=31.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...+|+|||+|.+||.||..+++.|. +|+|+||..
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~-~V~vleK~~   45 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGL-SVAVLSKVF   45 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCC-cEEEEeccC
Confidence            35689999999999999999999999 799999974

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.62  E-value=0.003  Score=63.02  Aligned_cols=35  Identities=23%  Similarity=0.494  Sum_probs=31.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...+|+|||+|.+||+||..+++.|. +|+|+|+..
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~-~VilieK~~   68 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGY-NVKVFCYQD   68 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC-cEEEEecCC
Confidence            35689999999999999999999999 799999854

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.62  E-value=0.0029  Score=62.03  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=32.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+|+++|..+++.|. +|+|+|+...
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~G~-~v~liEk~~~   40 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADSGL-EPLIVEKQDK   40 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            5589999999999999999999999 8999999853

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.62  E-value=0.0025  Score=62.57  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=31.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|.+||+||..+++.|. +|+|+||..
T Consensus         5 ~~DVvVVG~G~AGl~AAl~Aae~G~-~V~lveK~~   38 (566)
T PRK06452          5 EYDAVVIGGGLAGLMSAHEIASAGF-KVAVISKVF   38 (566)
T ss_pred             cCcEEEECccHHHHHHHHHHHHCCC-cEEEEEccC
Confidence            4589999999999999999999999 899999985

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=96.61  E-value=0.0022  Score=52.34  Aligned_cols=32  Identities=31%  Similarity=0.623  Sum_probs=28.1

Q ss_pred             EEECCChhHHHHHHHHHHc-----CCCcEEEEecCCCc
Q psy16201        149 ALIGCGPASLSCATFLSRM-----GYDDITIYEKNTYD  181 (240)
Q Consensus       149 aViG~G~~Gl~~a~~L~~~-----G~~~V~v~e~~~~~  181 (240)
                      ||||+|++|++++..|.+.     .. +|+|||+...+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~-~I~vfd~~~~G   37 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPL-EITVFDPSPFG   37 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCC-EEEEEcCCCcc
Confidence            6999999999999999887     35 89999997764

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=96.60  E-value=0.0024  Score=61.09  Aligned_cols=33  Identities=27%  Similarity=0.494  Sum_probs=27.7

Q ss_pred             eEEEECCChhHHHHHHHHHHcC---CCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMG---YDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G---~~~V~v~e~~~~  180 (240)
                      +|+|||+|++|..+|..|++.+   + +|+++|+...
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~-~v~lie~~~~   36 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDAL-SVTLIESPDI   36 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSS-EEEEEE-SSS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCc-EEEEEecCCC
Confidence            6999999999999999999998   8 8999999874

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK06116 glutathione reductase; Validated

Probab=96.59  E-value=0.0041  Score=58.90  Aligned_cols=59  Identities=12%  Similarity=0.241  Sum_probs=45.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|++|+..|..|++.|. +|+++++.+...      +.....+.++..|+++.++..+
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V  231 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGS-ETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVP  231 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEE
Confidence            5799999999999999999999999 799999876421      1122334567788888877644

>PLN02507 glutathione reductase

Probab=96.58  E-value=0.0041  Score=60.13  Aligned_cols=59  Identities=14%  Similarity=0.250  Sum_probs=45.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|+.|+..|..|++.|. +|+++++.+...      +.....+.+++.|++++++..+
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~-~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V  267 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGA-TVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNL  267 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence            5799999999999999999999999 799999876432      1122234567789999887643

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.57  E-value=0.0045  Score=58.23  Aligned_cols=60  Identities=15%  Similarity=0.183  Sum_probs=46.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|++|+.+|..|.+.|. +|+++++.+...       +.....+.++..|++++++..+
T Consensus       148 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v  214 (444)
T PRK09564        148 EIKNIVIIGAGFIGLEAVEAAKHLGK-NVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFV  214 (444)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC-cEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEE
Confidence            35799999999999999999999999 799999876421       2223345567788988877644

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=96.57  E-value=0.0038  Score=63.65  Aligned_cols=60  Identities=22%  Similarity=0.238  Sum_probs=47.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .+++|+|||+|+.|+.+|..|++.|. +|+|+++.+...       ......+.++..|++++++..+
T Consensus       139 ~~k~vvVVGgG~~GlE~A~~L~~~G~-~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v  205 (785)
T TIGR02374       139 RFKKAAVIGGGLLGLEAAVGLQNLGM-DVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDT  205 (785)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCce
Confidence            35789999999999999999999999 799999876532       1122344567889999888743

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.57  E-value=0.0027  Score=62.38  Aligned_cols=35  Identities=17%  Similarity=0.310  Sum_probs=31.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC---CCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG---YDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G---~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||+||..+++.|   . +|+|+||...
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~-~V~lleK~~~   42 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAERSGGKL-SVAVVSKTQP   42 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCC-cEEEEEcccC
Confidence            357999999999999999999998   8 7999999763

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.56  E-value=0.0026  Score=63.09  Aligned_cols=35  Identities=31%  Similarity=0.330  Sum_probs=31.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||+||..+++.  |. +|+|+||...
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~-~V~lieK~~~   47 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDL-KVLIVEKANI   47 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCC-eEEEEECCCc
Confidence            45899999999999999999998  99 8999999863

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=96.56  E-value=0.0029  Score=62.87  Aligned_cols=35  Identities=26%  Similarity=0.309  Sum_probs=32.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||+||..+++.|. +|+|+||...
T Consensus        29 ~~DVlVIG~G~AGl~AAi~Aa~~G~-~V~lveK~~~   63 (617)
T PTZ00139         29 TYDAVVVGAGGAGLRAALGLVELGY-KTACISKLFP   63 (617)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCC-cEEEEeccCC
Confidence            5689999999999999999999999 7999999864

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=96.55  E-value=0.0043  Score=59.25  Aligned_cols=58  Identities=12%  Similarity=0.215  Sum_probs=45.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      .++|+|||+|..|+..|..|++.|. +|+++++.+...      ......+.++..|+++.++..
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~-~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~  240 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGV-KVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSR  240 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCE
Confidence            4689999999999999999999999 799999876422      112233556778898887763

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=96.54  E-value=0.0033  Score=60.70  Aligned_cols=34  Identities=12%  Similarity=0.262  Sum_probs=30.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKN  178 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~  178 (240)
                      +..+|+|||+||+|+.+|..+++. |. +|.++|+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~-~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKK-RVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCC-EEEEEecc
Confidence            356899999999999999999997 89 89999973

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.54  E-value=0.0023  Score=63.31  Aligned_cols=31  Identities=23%  Similarity=0.484  Sum_probs=29.5

Q ss_pred             EEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        148 IALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       148 VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      |+|||+|.+||+||..+++.|. +|+|+||..
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~-~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGY-HVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCC-CEEEEEecC
Confidence            6899999999999999999999 799999987

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.54  E-value=0.0037  Score=61.71  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=31.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|.+||+||..+++.|. +|+|+||..
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~G~-~V~lleK~~   40 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQSGQ-SCALLSKVF   40 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCC-cEEEEEccC
Confidence            5689999999999999999999999 799999985

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.54  E-value=0.003  Score=62.43  Aligned_cols=34  Identities=18%  Similarity=0.277  Sum_probs=31.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|.+||+||..+++.|. +|+|+||..
T Consensus        12 ~~DVvVIG~G~AGl~AAl~Aa~~G~-~V~lveK~~   45 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEAGL-KTACITKVF   45 (598)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCC-cEEEEEccC
Confidence            5689999999999999999999999 899999975

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.53  E-value=0.0053  Score=58.00  Aligned_cols=60  Identities=13%  Similarity=0.283  Sum_probs=46.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|+.|+..|..|++.|. +|+++++.+...      +.....+.+++.|+++.++..+
T Consensus       157 ~~~~v~ViGgG~~g~E~A~~l~~~g~-~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v  222 (441)
T PRK08010        157 LPGHLGILGGGYIGVEFASMFANFGS-KVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHV  222 (441)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence            34699999999999999999999999 799999876421      1112234567789998887643

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=96.52  E-value=0.0031  Score=62.85  Aligned_cols=35  Identities=26%  Similarity=0.295  Sum_probs=32.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||.||..+++.|. +|+|+||...
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~-~VilveK~~~   84 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFP   84 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCC-cEEEEEcCCC
Confidence            4689999999999999999999999 8999999863

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=96.52  E-value=0.004  Score=61.30  Aligned_cols=37  Identities=27%  Similarity=0.393  Sum_probs=33.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ....+|+|||+|.+|+++|..++++|+ +|+|+|+...
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~-~v~~iek~~~   46 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGL-KVIVVEKDPV   46 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence            346789999999999999999999999 8999999763

>PRK12831 putative oxidoreductase; Provisional

Probab=96.52  E-value=0.007  Score=58.01  Aligned_cols=58  Identities=16%  Similarity=0.175  Sum_probs=42.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccch--HHHhccCceEEeCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSP--RIVKGTTSRHLYGP  202 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~--~~~~~~gv~~~~~~  202 (240)
                      .+++|+|||+|..|+.+|..|.+.|. +|+++.+.....+.....  ..+.+.|++|+++.
T Consensus       280 ~gk~VvVIGgG~va~d~A~~l~r~Ga-~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~  339 (464)
T PRK12831        280 VGKKVAVVGGGNVAMDAARTALRLGA-EVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLT  339 (464)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCC-EEEEEeecCcccCCCCHHHHHHHHHcCCEEEecc
Confidence            46899999999999999999999999 699998865432222111  12355777776554

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.52  E-value=0.004  Score=64.02  Aligned_cols=60  Identities=18%  Similarity=0.170  Sum_probs=47.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++++|||+|+.|+.+|..|++.|. +|+|++..+...       ....+.+.+++.|++++++..+
T Consensus       144 ~~k~vvVIGgG~iGlE~A~~L~~~G~-~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v  210 (847)
T PRK14989        144 RSKRGAVVGGGLLGLEAAGALKNLGV-ETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNT  210 (847)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeE
Confidence            35789999999999999999999999 799999877422       1223445677889999887644

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.51  E-value=0.0053  Score=59.48  Aligned_cols=59  Identities=15%  Similarity=0.158  Sum_probs=44.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHh-ccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVK-GTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~-~~gv~~~~~~~  203 (240)
                      .+++|+|||+|.+|+.+|..|+..|. +|+++++.+.........+.+. ..|++++++..
T Consensus       350 ~gk~VvVVGgG~~g~e~A~~L~~~~~-~Vtlv~~~~~l~~~~~l~~~l~~~~gI~i~~~~~  409 (517)
T PRK15317        350 KGKRVAVIGGGNSGVEAAIDLAGIVK-HVTVLEFAPELKADQVLQDKLRSLPNVTIITNAQ  409 (517)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEEECccccccHHHHHHHhcCCCcEEEECcE
Confidence            57899999999999999999999999 8999998765433333333443 35888877653

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.50  E-value=0.0034  Score=59.20  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=33.2

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+.++|+|||+|.+|+.+|..|.+.++ +|+++|+++.
T Consensus         7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~-~ItlI~~~~~   44 (424)
T PTZ00318          7 RLKKPNVVVLGTGWAGAYFVRNLDPKKY-NITVISPRNH   44 (424)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHhCcCCC-eEEEEcCCCC
Confidence            3456799999999999999999987788 7999998874

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=96.49  E-value=0.0052  Score=58.27  Aligned_cols=59  Identities=15%  Similarity=0.216  Sum_probs=45.5

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      ..++|+|||+|++|+.+|..|++.|. +|+++++.+...      +.....+.+++.|+.+.++..
T Consensus       165 ~~~~vvVIGgG~~g~E~A~~l~~~G~-~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~  229 (446)
T TIGR01424       165 LPKSILILGGGYIAVEFAGIWRGLGV-QVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTS  229 (446)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCE
Confidence            35789999999999999999999999 799999876421      111233456678999888764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=96.49  E-value=0.0032  Score=59.35  Aligned_cols=28  Identities=25%  Similarity=0.433  Sum_probs=25.3

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEE
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIY  175 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~  175 (240)
                      +|+|||+|.+|.+||+.++++|+ +|.++
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~-~V~Li   28 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGA-KVLLI   28 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT---EEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CEEEE
Confidence            58999999999999999999999 79999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PTZ00058 glutathione reductase; Provisional

Probab=96.49  E-value=0.0049  Score=60.61  Aligned_cols=59  Identities=14%  Similarity=0.237  Sum_probs=45.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|..|+..|..|++.|. +|+++++.+...      +.....+.+++.|+++.++..+
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~-~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V  301 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGA-ESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANV  301 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC-cEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            6799999999999999999999999 799999876421      1222334566789988877643

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.48  E-value=0.0034  Score=61.70  Aligned_cols=34  Identities=21%  Similarity=0.376  Sum_probs=30.5

Q ss_pred             CeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~  180 (240)
                      .+|+|||+|.+||+||+.+++.|  . +|+|+||...
T Consensus         4 ~DVlVIG~G~AGl~AAi~aa~~g~g~-~V~vleK~~~   39 (575)
T PRK05945          4 HDVVIVGGGLAGCRAALEIKRLDPSL-DVAVVAKTHP   39 (575)
T ss_pred             ccEEEECccHHHHHHHHHHHHhcCCC-cEEEEeccCC
Confidence            47999999999999999999874  7 7999999864

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=96.47  E-value=0.0036  Score=59.48  Aligned_cols=34  Identities=24%  Similarity=0.352  Sum_probs=31.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|++|+++|..|++.|. +|+++|+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~-~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGK-RVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCC-cEEEEECCC
Confidence            3589999999999999999999999 799999864

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=96.47  E-value=0.0052  Score=58.25  Aligned_cols=58  Identities=24%  Similarity=0.413  Sum_probs=43.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      ..++|+|||+|++|+..|..|++.|. +|+++++.+...      +.....+.++.. +++.++..
T Consensus       168 ~~k~v~VIGgG~~g~E~A~~l~~~g~-~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~  231 (460)
T PRK06292        168 LPKSLAVIGGGVIGLELGQALSRLGV-KVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAK  231 (460)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCE
Confidence            35799999999999999999999999 799999877432      112223344556 77777653

>PRK14694 putative mercuric reductase; Provisional

Probab=96.46  E-value=0.0057  Score=58.37  Aligned_cols=59  Identities=15%  Similarity=0.225  Sum_probs=44.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc-----cccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD-----MVTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~-----~~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|++|+..|..|++.|. +|+++++....     .+.....+.++..|+++.++..+
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~-~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v  241 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGS-RVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQA  241 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence            5799999999999999999999999 79999874321     12223345567789998887543

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=96.46  E-value=0.0038  Score=59.72  Aligned_cols=37  Identities=19%  Similarity=0.264  Sum_probs=33.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-cc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~  182 (240)
                      ..+|+|||+|.+|+.+|..|++.|. +|.++|+++. ||
T Consensus         4 ~~DViViGtGL~e~ilAa~Ls~~Gk-kVLhlD~n~~yGG   41 (443)
T PTZ00363          4 TYDVIVCGTGLKECILSGLLSVNGK-KVLHMDRNPYYGG   41 (443)
T ss_pred             cceEEEECCChHHHHHHhhhhhCCC-EEEEecCCCCcCc
Confidence            4689999999999999999999999 8999999986 44

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=96.43  E-value=0.0036  Score=55.48  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=28.5

Q ss_pred             eEEEECCChhHHHHHHHHHHcC-CCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMG-YDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~~  180 (240)
                      +++|||+|.+|..+|..|++.| . +|.|+|+...
T Consensus         2 D~iIVGsG~~G~v~A~rLs~~~~~-~VlvlEaG~~   35 (296)
T PF00732_consen    2 DYIIVGSGAGGSVVASRLSEAGNK-KVLVLEAGPR   35 (296)
T ss_dssp             EEEEES-SHHHHHHHHHHTTSTTS--EEEEESSBS
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCC-cEEEEEcccc
Confidence            6899999999999999999997 6 7999999864

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.43  E-value=0.0041  Score=62.32  Aligned_cols=33  Identities=21%  Similarity=0.503  Sum_probs=31.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ..+|+|||+||+|+++|..+++.|. +|.|+|+.
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~-kV~lie~~  148 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGL-KVIIFTGD  148 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            5689999999999999999999999 89999975

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=96.42  E-value=0.0046  Score=59.33  Aligned_cols=38  Identities=24%  Similarity=0.459  Sum_probs=34.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC-CCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN-TYDM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~-~~~~  182 (240)
                      ...+++|||+||+|..+|..+++.|. +|.++|+. ..||
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~-kvalvE~~~~lGG   41 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGL-KVALVEKGERLGG   41 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CEEEEeecCCcCc
Confidence            35789999999999999999999999 59999999 4665

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.41  E-value=0.004  Score=50.96  Aligned_cols=32  Identities=31%  Similarity=0.568  Sum_probs=30.2

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|+|+|..|.+.|..|+++|+ +|++|.+..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccH
Confidence            69999999999999999999999 899999875

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA

Probab=96.41  E-value=0.03  Score=56.66  Aligned_cols=64  Identities=23%  Similarity=0.543  Sum_probs=48.2

Q ss_pred             CChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhcccc
Q psy16201         30 LSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLY  106 (240)
Q Consensus        30 ~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~  106 (240)
                      ++..+.....++|+.|+  -|+.+||.+..+...+..+..|++.....       +...| -.|.   .|++.|+.+
T Consensus       355 p~~~el~~~~~kCI~CG--~Cv~aCP~~l~i~e~i~~~~~G~~~~l~~-------~~~~C-t~CG---~C~evCP~g  418 (731)
T cd01916         355 PTDEEFQELAAKCTDCG--WCTRACPNSLRIKEAMEAAKEGDFSGLAD-------LFDQC-VGCG---RCEQECPKE  418 (731)
T ss_pred             CchHHHHHhhhcCCCCC--cccccCCCCCcHHHHHHHHhcCChhhhhh-------hHhhh-hhhh---HHhhhCCCC
Confidence            45677788999999999  79999999998888888888887643211       12344 4566   599999964

ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.40  E-value=0.0082  Score=55.05  Aligned_cols=59  Identities=12%  Similarity=0.122  Sum_probs=44.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCc-EEEEecCCCcc--ccccchHHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDD-ITIYEKNTYDM--VTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~-V~v~e~~~~~~--~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      .+++|+|||+|+.|+.+|..|++.|. + |+|+++.....  ........++..|+++.++..
T Consensus       171 ~g~~vvViG~G~~g~e~A~~l~~~g~-~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~  232 (352)
T PRK12770        171 EGKKVVVVGAGLTAVDAALEAVLLGA-EKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVT  232 (352)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeecchhhCCCCHHHHHHHHHcCCEEeeccC
Confidence            47899999999999999999999998 6 99999765321  112223456778888877654

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=96.40  E-value=0.0041  Score=62.24  Aligned_cols=35  Identities=26%  Similarity=0.270  Sum_probs=32.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||.||..+++.|. +|+|+|+...
T Consensus         5 ~~DVlVIG~G~AGl~AAi~Aae~G~-~VivleK~~~   39 (657)
T PRK08626          5 YTDALVIGAGLAGLRVAIAAAQRGL-DTIVLSLVPA   39 (657)
T ss_pred             eccEEEECccHHHHHHHHHHHHcCC-CEEEEeCCCC
Confidence            4589999999999999999999999 7999998764

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.39  E-value=0.013  Score=56.41  Aligned_cols=69  Identities=16%  Similarity=0.305  Sum_probs=48.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhcc--CceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGT--TSRHLYGPEQGSFLNIELISEKTAYQWV  222 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~--gv~~~~~~~vg~~i~~e~L~~~s~~d~V  222 (240)
                      +++|.|+|.|.+|+++|..|.++|+ +|+++|......    ....++..  |+++..+.     ...+.+.   .+|.|
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~~~----~~~~L~~~~~~~~~~~g~-----~~~~~~~---~~d~v   73 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHGA-RLRVADTREAPP----NLAALRAELPDAEFVGGP-----FDPALLD---GVDLV   73 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCCCCch----hHHHHHhhcCCcEEEeCC-----CchhHhc---CCCEE
Confidence            6789999999999999999999999 799999765321    11224444  55665543     2233333   38899


Q ss_pred             EEec
Q psy16201        223 YYSN  226 (240)
Q Consensus       223 ~~s~  226 (240)
                      ++|.
T Consensus        74 v~sp   77 (498)
T PRK02006         74 ALSP   77 (498)
T ss_pred             EECC
Confidence            9884

>PRK08275 putative oxidoreductase; Provisional

Probab=96.38  E-value=0.0038  Score=61.04  Aligned_cols=35  Identities=26%  Similarity=0.306  Sum_probs=31.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||+||..+++.  |. +|+|+||...
T Consensus         9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~-~VilveK~~~   45 (554)
T PRK08275          9 ETDILVIGGGTAGPMAAIKAKERNPAL-RVLLLEKANV   45 (554)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHhCCCC-eEEEEeCCCC
Confidence            45899999999999999999987  68 7999999874

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.38  E-value=0.004  Score=59.98  Aligned_cols=31  Identities=19%  Similarity=0.347  Sum_probs=29.7

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEK  177 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~  177 (240)
                      .+|+|||+||+|+.+|..+++.|. +|.++|+
T Consensus         3 yDvvVIG~G~aG~~aA~~aa~~G~-~v~lie~   33 (484)
T TIGR01438         3 YDLIVIGGGSGGLAAAKEAADYGA-KVMLLDF   33 (484)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence            589999999999999999999999 8999997

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PLN02546 glutathione reductase

Probab=96.37  E-value=0.0064  Score=59.77  Aligned_cols=59  Identities=15%  Similarity=0.211  Sum_probs=45.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      ..++|+|||+|+.|+..|..|++.|. +|+++++.+...      +.....+.++..|+++.++..
T Consensus       251 ~~k~V~VIGgG~iGvE~A~~L~~~g~-~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~  315 (558)
T PLN02546        251 KPEKIAIVGGGYIALEFAGIFNGLKS-DVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEES  315 (558)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCE
Confidence            45799999999999999999999999 799999876421      112233456778999887754

>KOG2820|consensus

Probab=96.37  E-value=0.0044  Score=57.25  Aligned_cols=38  Identities=24%  Similarity=0.336  Sum_probs=33.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      .....|+|||+|+.|+++|+.|+++|. ++.++|+.+.+
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~g~-killLeqf~~p   42 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKRGD-KILLLEQFPLP   42 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhcCC-eEEEEeccCCC
Confidence            345689999999999999999999999 89999998743

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.37  E-value=0.011  Score=56.32  Aligned_cols=69  Identities=20%  Similarity=0.253  Sum_probs=50.7

Q ss_pred             CCCCeEEEECCChhHHH-HHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcE
Q psy16201        143 FPDTKIALIGCGPASLS-CATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQW  221 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~-~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~  221 (240)
                      ..+++|.|+|.|-+|++ +|..|.++|+ +|+++|......     ...++..|+.+.++.      ..+.+.   .+|.
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~~~~-----~~~l~~~gi~~~~~~------~~~~~~---~~d~   69 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKESAV-----TQRLLELGAIIFIGH------DAENIK---DADV   69 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCCChH-----HHHHHHCCCEEeCCC------CHHHCC---CCCE
Confidence            34678999999999999 6999999999 799999876431     223566788876522      233332   3899


Q ss_pred             EEEec
Q psy16201        222 VYYSN  226 (240)
Q Consensus       222 V~~s~  226 (240)
                      |++|.
T Consensus        70 vv~sp   74 (461)
T PRK00421         70 VVYSS   74 (461)
T ss_pred             EEECC
Confidence            99884

>PRK13748 putative mercuric reductase; Provisional

Probab=96.35  E-value=0.0068  Score=58.97  Aligned_cols=59  Identities=19%  Similarity=0.294  Sum_probs=44.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-----ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-----VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-----~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|+.|+..|..|++.|. +|+++++.....     +.....+.++..|+++.++..+
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v  333 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGS-KVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQA  333 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-EEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEE
Confidence            4799999999999999999999999 899999754211     1122334567788988877643

>PRK10262 thioredoxin reductase; Provisional

Probab=96.32  E-value=0.0067  Score=54.65  Aligned_cols=59  Identities=15%  Similarity=0.162  Sum_probs=43.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc----ccccchHHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM----VTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~----~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      .+++|+|||+|.+|+..|..|++.|. +|+++++.+...    ......+.++..++++..+..
T Consensus       145 ~g~~vvVvGgG~~g~e~A~~l~~~~~-~Vtlv~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~  207 (321)
T PRK10262        145 RNQKVAVIGGGNTAVEEALYLSNIAS-EVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRT  207 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhCC-EEEEEEECCccCCCHHHHHHHHhhccCCCeEEEeCCE
Confidence            47899999999999999999999999 799999876321    111122334567788777653

>PRK06175 L-aspartate oxidase; Provisional

Probab=96.32  E-value=0.0047  Score=58.65  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=30.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||+||..+. .|. +|+|+||...
T Consensus         4 ~~DVvVVG~G~AGl~AA~~a~-~G~-~V~lleK~~~   37 (433)
T PRK06175          4 YADVLIVGSGVAGLYSALNLR-KDL-KILMVSKGKL   37 (433)
T ss_pred             cccEEEECchHHHHHHHHHhc-cCC-CEEEEecCCC
Confidence            458999999999999999974 799 8999999864

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=96.29  E-value=0.0048  Score=61.34  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=30.0

Q ss_pred             eEEEECCChhHHHHHHHHH----HcCCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLS----RMGYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~----~~G~~~V~v~e~~~~  180 (240)
                      +|+|||+|.+||+||..++    +.|. +|+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~-~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGL-KIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCC-eEEEEEccCC
Confidence            5899999999999999998    6799 8999999764

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=96.29  E-value=0.0054  Score=58.44  Aligned_cols=37  Identities=24%  Similarity=0.275  Sum_probs=33.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+|+.|+++|+.|.+.+  . +|+|+||....+
T Consensus         3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~-~V~llEk~~~~a   41 (429)
T COG0579           3 DYDVVIIGGGIMGAATAYELSEYEPDL-SVALLEKEDGVA   41 (429)
T ss_pred             ceeEEEECCcHHHHHHHHHHHHhCCCc-eEEEEEccCccc
Confidence            468999999999999999999998  8 899999988543

>PRK07395 L-aspartate oxidase; Provisional

Probab=96.28  E-value=0.0052  Score=60.24  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=30.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|.+||+||..++ .|. +|+|+||...
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~-~G~-~V~lieK~~~   42 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLP-SHL-RVGLITKDTL   42 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhh-cCC-CEEEEEccCC
Confidence            4568999999999999999986 599 8999999864

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.25  E-value=0.0047  Score=60.19  Aligned_cols=34  Identities=26%  Similarity=0.366  Sum_probs=30.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||+||..+ +.|. +|+|+||...
T Consensus         7 ~~DVlVVG~G~AGl~AAi~A-~~G~-~VilleK~~~   40 (543)
T PRK06263          7 ITDVLIIGSGGAGARAAIEA-ERGK-NVVIVSKGLF   40 (543)
T ss_pred             ccCEEEECccHHHHHHHHHH-hcCC-CEEEEEccCC
Confidence            45899999999999999999 8999 8999999753

>PRK14727 putative mercuric reductase; Provisional

Probab=96.24  E-value=0.0084  Score=57.49  Aligned_cols=59  Identities=15%  Similarity=0.199  Sum_probs=44.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc-c----ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD-M----VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~-~----~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|+.|+..|..|++.|. +|+++++.... .    +.....+.++..|+++.++..+
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~-~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V  251 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGS-RVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQA  251 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-EEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEE
Confidence            4799999999999999999999999 89999875321 1    1122334556788888877644

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.24  E-value=0.022  Score=53.98  Aligned_cols=71  Identities=18%  Similarity=0.235  Sum_probs=51.1

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhc--cCceEEeCCccCcccCHHHHHhhcCCc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKG--TTSRHLYGPEQGSFLNIELISEKTAYQ  220 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~--~gv~~~~~~~vg~~i~~e~L~~~s~~d  220 (240)
                      ..+.-|+|+|.|-+|+++|..|.++|+ +|++.|......    ....++.  .|+.+..+.     .+.+.+.   .+|
T Consensus         4 ~~~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~~~----~~~~l~~~~~g~~~~~~~-----~~~~~~~---~~d   70 (448)
T PRK03803          4 QSDGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSREQPP----GLDTLAREFPDVELRCGG-----FDCELLV---QAS   70 (448)
T ss_pred             ccCCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCCCCch----hHHHHHhhcCCcEEEeCC-----CChHHhc---CCC
Confidence            346689999999999999999999999 899999765321    1123444  478777653     2334443   389


Q ss_pred             EEEEec
Q psy16201        221 WVYYSN  226 (240)
Q Consensus       221 ~V~~s~  226 (240)
                      .|++|.
T Consensus        71 ~vV~sp   76 (448)
T PRK03803         71 EIIISP   76 (448)
T ss_pred             EEEECC
Confidence            999985

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.23  E-value=0.0085  Score=57.72  Aligned_cols=58  Identities=19%  Similarity=0.276  Sum_probs=43.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-cc----ccccchHHHhccCceEEeCCc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DM----VTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~----~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      .++++|||+|+.|+.+|..|++.|. +|+++++... +.    +.....+.++..|+++.++..
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~-~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~  242 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGL-DVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFV  242 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCC-cEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCce
Confidence            4589999999999999999999999 7999997421 11    122334456778999888763

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]

Probab=96.22  E-value=0.0086  Score=51.05  Aligned_cols=58  Identities=21%  Similarity=0.424  Sum_probs=43.8

Q ss_pred             hcccCcCCCCccccCCCCCC----ChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhccccc
Q psy16201         39 ASRCLKCADAPCQKSCPTQI----DIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYA  107 (240)
Q Consensus        39 a~rC~~c~~~~C~~aCP~~~----di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~~  107 (240)
                      -.+|++|+  .|+.+||++.    ..+.+|+++..|.-+   .++.+  +....| -.|.   -|..-|||+.
T Consensus        38 l~~C~QCG--~CT~sCPs~r~t~y~pR~ii~~~~~g~~d---~il~~--~~lW~C-~tCy---tC~eRCPr~v   99 (195)
T COG1150          38 LEGCYQCG--TCTGSCPSGRFTDYSPRKIIRKARLGLVD---LILSS--ESLWAC-VTCY---TCTERCPRGV   99 (195)
T ss_pred             HhHhhccC--cccCCCCCcccCCCCHHHHHHHHHcccHH---HHhcC--Ccceee-eech---hhhhhCCCCC
Confidence            34599999  6999999875    678999999999987   33333  334555 4666   5999999863

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.18  E-value=0.0092  Score=57.15  Aligned_cols=57  Identities=16%  Similarity=0.283  Sum_probs=41.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      .++|+|||+|+.|+..|..|++.|. +|+++|+.+...      +.....+.++.. +.+.++..
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~-~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~  236 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGS-EVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETK  236 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCE
Confidence            4799999999999999999999999 799999887421      111222334444 67666543

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=96.17  E-value=0.0069  Score=59.59  Aligned_cols=35  Identities=29%  Similarity=0.585  Sum_probs=32.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+|+++|..++++|+ +|+|+|+...
T Consensus        16 ~~dvvvvG~G~aG~~aa~~~~~~g~-~v~l~ek~~~   50 (578)
T PRK12843         16 EFDVIVIGAGAAGMSAALFAAIAGL-KVLLVERTEY   50 (578)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            4589999999999999999999999 8999999764

>PRK08071 L-aspartate oxidase; Provisional

Probab=96.17  E-value=0.0058  Score=59.22  Aligned_cols=34  Identities=32%  Similarity=0.520  Sum_probs=30.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||.||..+++ |. +|+|+||...
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~-~V~lveK~~~   36 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EY-NVIIITKKTK   36 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CC-CEEEEeccCC
Confidence            4589999999999999999976 98 7999999874

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.16  E-value=0.0075  Score=50.64  Aligned_cols=33  Identities=33%  Similarity=0.749  Sum_probs=28.7

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +|+|||+|..|...|..+++.|+ +|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChH
Confidence            68999999999999999999999 8999998763

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=96.16  E-value=0.0094  Score=57.53  Aligned_cols=58  Identities=12%  Similarity=0.207  Sum_probs=43.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc---CCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM---GYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~---G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      .++|+|||+|+.|+..|..+...   |. +|+++++.+...      +.....+.++..|+++.++..
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~-~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~  253 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGG-KVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNEN  253 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCC-eEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCE
Confidence            57999999999999999877554   89 899999877421      222334566788999888764

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.16  E-value=0.013  Score=55.74  Aligned_cols=60  Identities=15%  Similarity=0.226  Sum_probs=44.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccc--cchHHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTN--VSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~--~~~~~~~~~gv~~~~~~~  203 (240)
                      .+++|+|||+|..|+.+|..|.+.|.++|+++++.....+..  .....+++.|+++.++..
T Consensus       272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~  333 (457)
T PRK11749        272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWLAA  333 (457)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEecCC
Confidence            468999999999999999999999975699999865322111  112344677888877653

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.16  E-value=0.01  Score=58.03  Aligned_cols=60  Identities=17%  Similarity=0.227  Sum_probs=44.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc-cccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV-TNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~-~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .+++|+|||+|..|+..|..|++.|. +|+++++.+.... .....+.+...|+++.++..+
T Consensus       142 ~g~~VvVIGgG~~g~E~A~~L~~~g~-~Vtli~~~~~~~~~~~~~~~~~~~~gV~i~~~~~V  202 (555)
T TIGR03143       142 TGMDVFVIGGGFAAAEEAVFLTRYAS-KVTVIVREPDFTCAKLIAEKVKNHPKIEVKFNTEL  202 (555)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHccCC-EEEEEEeCCccccCHHHHHHHHhCCCcEEEeCCEE
Confidence            57899999999999999999999999 7999998764211 111222334568888776643

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.13  E-value=0.0081  Score=59.07  Aligned_cols=36  Identities=22%  Similarity=0.470  Sum_probs=32.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ....+|+|||+| +|+++|..+++.|. +|.|+||.+.
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~-~v~v~Ek~~~   49 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGL-SVLIVEKSSY   49 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCC-cEEEEecCCC
Confidence            346799999999 89999999999999 8999999864

>PTZ00052 thioredoxin reductase; Provisional

Probab=96.13  E-value=0.011  Score=57.26  Aligned_cols=58  Identities=21%  Similarity=0.271  Sum_probs=43.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc-c----ccccchHHHhccCceEEeCCc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD-M----VTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~-~----~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      .++|+|||+|+.|+..|..|++.|. +|+++++.... .    +.....+.++..|+++.++..
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~-~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~  244 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGF-DVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVV  244 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCe
Confidence            4589999999999999999999999 79999874321 1    112233456678888887753

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=96.12  E-value=0.0071  Score=64.27  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=33.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|.+||+||..+++.|. +|+|+||...
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga-~VivlEK~~~  443 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGA-QVILLEKEAK  443 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEEccCC
Confidence            45789999999999999999999999 8999999864

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=96.11  E-value=0.0071  Score=59.66  Aligned_cols=35  Identities=29%  Similarity=0.353  Sum_probs=30.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||.||..+++.  |. +|+|+||...
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~-~V~lveK~~~   39 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHL-DVALISKVYP   39 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCC-cEEEEEccCC
Confidence            34799999999999999999987  57 7999999763

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=96.09  E-value=0.0074  Score=59.49  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=30.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||.||..+++.|  . +|+|+||...
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~-~V~lleK~~~   40 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNL-KIALISKVYP   40 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCCCC-cEEEEEccCC
Confidence            358999999999999999999874  7 7999999853

>TIGR00551 nadB L-aspartate oxidase

Probab=96.06  E-value=0.0079  Score=57.86  Aligned_cols=33  Identities=30%  Similarity=0.478  Sum_probs=30.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|+|||+|.+||++|..+++.|.  |+|+||...
T Consensus         3 ~DVlVVG~G~AGl~AA~~aa~~G~--V~lleK~~~   35 (488)
T TIGR00551         3 CDVVVIGSGAAGLSAALALADQGR--VIVLSKAPV   35 (488)
T ss_pred             ccEEEECccHHHHHHHHHHHhCCC--EEEEEccCC
Confidence            479999999999999999999886  999999853

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.05  E-value=0.014  Score=60.11  Aligned_cols=83  Identities=14%  Similarity=0.161  Sum_probs=53.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc----CCCcEEEEecCCCcc-----ccc------------cchHHHhccCceEEeCCc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM----GYDDITIYEKNTYDM-----VTN------------VSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~----G~~~V~v~e~~~~~~-----~~~------------~~~~~~~~~gv~~~~~~~  203 (240)
                      .++|+|||+|++|+.+|..|.++    ++ +|+||++.+...     +..            ..+..++..+++++.+..
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~-~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~   81 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANF-DITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGER   81 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCC-eEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCE
Confidence            35899999999999999999764    47 799999887532     111            112345667888888764


Q ss_pred             cCc-c-----cCHHHHHhhcCCcEEEEecccc
Q psy16201        204 QGS-F-----LNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       204 vg~-~-----i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      +-. +     +..+.=.. -.||.+++++...
T Consensus        82 V~~Id~~~~~V~~~~G~~-i~yD~LVIATGs~  112 (847)
T PRK14989         82 AITINRQEKVIHSSAGRT-VFYDKLIMATGSY  112 (847)
T ss_pred             EEEEeCCCcEEEECCCcE-EECCEEEECCCCC
Confidence            321 1     11110001 1489999997654

>KOG2852|consensus

Probab=96.03  E-value=0.0032  Score=57.17  Aligned_cols=38  Identities=29%  Similarity=0.462  Sum_probs=33.6

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcC------CCcEEEEecCCC
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMG------YDDITIYEKNTY  180 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G------~~~V~v~e~~~~  180 (240)
                      ..+.++|+|||+|+.|..+|++|++++      + .|++||+...
T Consensus         7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~-~ItifEs~~I   50 (380)
T KOG2852|consen    7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGEL-DITIFESKEI   50 (380)
T ss_pred             cCCceEEEEECCCceeeeeehhhhcCCccCCCce-eEEEEeeccc
Confidence            345689999999999999999999987      7 7999998763

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.99  E-value=0.0085  Score=50.64  Aligned_cols=33  Identities=30%  Similarity=0.370  Sum_probs=26.9

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|+|+|.|..||..|..|+++|+ +|+.||.+.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~   33 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDE   33 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-H
T ss_pred             CEEEEECCCcchHHHHHHHHhCCC-EEEEEeCCh
Confidence            489999999999999999999999 899999876

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=95.95  E-value=0.013  Score=55.31  Aligned_cols=59  Identities=14%  Similarity=0.167  Sum_probs=44.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHH--------------cCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSR--------------MGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~--------------~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|++|+..|..|+.              .+. +|+++++.+...      +.+...+.+++.|+++.++..+
T Consensus       173 ~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~-~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v  251 (424)
T PTZ00318        173 LLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEEC-KVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAV  251 (424)
T ss_pred             cCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccC-EEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeE
Confidence            3599999999999999988875              367 799999876421      2233445678899999987754

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=95.94  E-value=0.014  Score=59.50  Aligned_cols=80  Identities=14%  Similarity=0.155  Sum_probs=52.1

Q ss_pred             EEEECCChhHHHHHHHHHHc---CCCcEEEEecCCCcc-----ccc-------------cchHHHhccCceEEeCCccCc
Q psy16201        148 IALIGCGPASLSCATFLSRM---GYDDITIYEKNTYDM-----VTN-------------VSPRIVKGTTSRHLYGPEQGS  206 (240)
Q Consensus       148 VaViG~G~~Gl~~a~~L~~~---G~~~V~v~e~~~~~~-----~~~-------------~~~~~~~~~gv~~~~~~~vg~  206 (240)
                      |+|||+|++|+++|..|.+.   ++ +|+||++.+...     +..             .....++..+++++++..+-.
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~-~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~   79 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMF-EITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQ   79 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCC-eEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEE
Confidence            68999999999999998775   47 799999887532     111             112345677899998865432


Q ss_pred             -c-----cCHHHHHhhcCCcEEEEecccc
Q psy16201        207 -F-----LNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       207 -~-----i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                       +     +..+.=.. -.||.+++++...
T Consensus        80 Id~~~k~V~~~~g~~-~~yD~LVlATGs~  107 (785)
T TIGR02374        80 IDTDQKQVITDAGRT-LSYDKLILATGSY  107 (785)
T ss_pred             EECCCCEEEECCCcE-eeCCEEEECCCCC
Confidence             1     11110001 1499999997654

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.94  E-value=0.0094  Score=58.74  Aligned_cols=34  Identities=15%  Similarity=0.155  Sum_probs=30.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||+||+.+++. . +|+|+||...
T Consensus         5 ~~DVlVIG~G~AGl~AAl~aa~~-~-~VilleK~~~   38 (583)
T PRK08205          5 RYDVVIVGAGGAGMRAAIEAGPR-A-RTAVLTKLYP   38 (583)
T ss_pred             eccEEEECccHHHHHHHHHHHhC-C-CEEEEeCCCC
Confidence            45899999999999999999876 7 8999999753

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.90  E-value=0.042  Score=47.03  Aligned_cols=35  Identities=17%  Similarity=0.356  Sum_probs=31.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      -.+++|+|||+|-.|...+..|.+.|+ +|+|+.+.
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~   42 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPE   42 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            468999999999999999999999999 89999864

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=95.90  E-value=0.0089  Score=61.85  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=32.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||.+|..+++.|. +|+|+||...
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~-~V~lleK~~~   47 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGA-NVLLLEKAHV   47 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCC-eEEEEecccc
Confidence            4589999999999999999999999 8999999763

>PRK07846 mycothione reductase; Reviewed

Probab=95.89  E-value=0.015  Score=55.34  Aligned_cols=58  Identities=12%  Similarity=0.201  Sum_probs=42.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc--c----cccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM--V----TNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~--~----~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|+.|+.+|..|++.|. +|+++++.+...  .    .....+ +...+++++++..+
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~-~Vtli~~~~~ll~~~d~~~~~~l~~-l~~~~v~i~~~~~v  229 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGV-RVTVVNRSGRLLRHLDDDISERFTE-LASKRWDVRLGRNV  229 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCCccccccCHHHHHHHHH-HHhcCeEEEeCCEE
Confidence            4799999999999999999999999 799999877432  1    111111 12356777776543

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=95.89  E-value=0.013  Score=58.65  Aligned_cols=59  Identities=15%  Similarity=0.271  Sum_probs=44.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHH-HhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRI-VKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~-~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|+.|+..|..|++.|. +|+++|+.+...      +.....+. ++..|++++++..+
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~-eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V  377 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGS-EVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLI  377 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCC-eEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEE
Confidence            4689999999999999999999999 799999887532      11112222 35678888877643

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.87  E-value=0.04  Score=52.26  Aligned_cols=67  Identities=13%  Similarity=0.201  Sum_probs=48.2

Q ss_pred             CeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201        146 TKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY  223 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~  223 (240)
                      ++|.|+|.|-+|++++..|.+.  |+ +|++.|......    ..+.++. |+.+.++.     .+.+.+.   .+|.|+
T Consensus         8 ~~v~viG~G~sG~s~~~~l~~~~~~~-~v~~~D~~~~~~----~~~~l~~-g~~~~~g~-----~~~~~~~---~~d~vV   73 (438)
T PRK04663          8 KNVVVVGLGITGLSVVKHLRKYQPQL-TVKVIDTRETPP----GQEQLPE-DVELHSGG-----WNLEWLL---EADLVV   73 (438)
T ss_pred             ceEEEEeccHHHHHHHHHHHhcCCCC-eEEEEeCCCCch----hHHHhhc-CCEEEeCC-----CChHHhc---cCCEEE
Confidence            6899999999999999999887  58 799999765321    1123443 88887654     2334442   389999


Q ss_pred             Eec
Q psy16201        224 YSN  226 (240)
Q Consensus       224 ~s~  226 (240)
                      +|.
T Consensus        74 ~Sp   76 (438)
T PRK04663         74 TNP   76 (438)
T ss_pred             ECC
Confidence            985

>PRK09077 L-aspartate oxidase; Provisional

Probab=95.84  E-value=0.011  Score=57.77  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=30.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||++|..+++. . +|+|+||...
T Consensus         8 ~~DVlVVG~G~AGl~AA~~aa~~-~-~VilveK~~~   41 (536)
T PRK09077          8 QCDVLIIGSGAAGLSLALRLAEH-R-RVAVLSKGPL   41 (536)
T ss_pred             cCCEEEECchHHHHHHHHHHHHC-C-CEEEEeccCC
Confidence            45899999999999999999876 7 7999999763

>PRK02106 choline dehydrogenase; Validated

Probab=95.84  E-value=0.012  Score=57.60  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=31.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHH-cCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSR-MGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~-~G~~~V~v~e~~~  179 (240)
                      ..+++|||+|.+|+.+|..|++ .|+ +|.|+|+..
T Consensus         5 ~~D~iIVG~G~aG~vvA~rLae~~g~-~VlvlEaG~   39 (560)
T PRK02106          5 EYDYIIIGAGSAGCVLANRLSEDPDV-SVLLLEAGG   39 (560)
T ss_pred             cCcEEEECCcHHHHHHHHHHHhCCCC-eEEEecCCC
Confidence            4689999999999999999999 799 799999985

>TIGR03452 mycothione_red mycothione reductase

Probab=95.83  E-value=0.017  Score=54.99  Aligned_cols=35  Identities=23%  Similarity=0.393  Sum_probs=32.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .++|+|||+|+.|+..|..|++.|. +|+++++.+.
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~-~Vtli~~~~~  203 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGT-RVTIVNRSTK  203 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEEccCc
Confidence            5799999999999999999999999 7999998764

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=95.83  E-value=0.012  Score=56.03  Aligned_cols=32  Identities=34%  Similarity=0.516  Sum_probs=30.1

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||+|++|+++|..|+++|+ +|.|+|+..
T Consensus         2 Dv~IIGgG~aGl~~A~~l~~~g~-~v~lv~~~~   33 (419)
T TIGR03378         2 DVIIIGGGLAGLSCALRLAEAGK-KCAIIAAGQ   33 (419)
T ss_pred             CEEEECchHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            69999999999999999999999 799999875

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=95.82  E-value=0.024  Score=57.53  Aligned_cols=59  Identities=19%  Similarity=0.231  Sum_probs=42.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccch--HHHhccCceEEeCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSP--RIVKGTTSRHLYGP  202 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~--~~~~~~gv~~~~~~  202 (240)
                      .+++|+|||+|..|+.+|..|.+.|.++|+++++.....+.....  ..+.+.|++|.++.
T Consensus       569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~~  629 (752)
T PRK12778        569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLH  629 (752)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEecC
Confidence            468999999999999999999999983399999875422111111  23456788776554

>PLN02815 L-aspartate oxidase

Probab=95.81  E-value=0.011  Score=58.48  Aligned_cols=34  Identities=26%  Similarity=0.334  Sum_probs=30.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||++|..+++.| + |+|+||...
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~-VvlleK~~~   62 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-T-VAIITKDEP   62 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-C-EEEEECCCC
Confidence            458999999999999999999999 4 999999774

>KOG2415|consensus

Probab=95.77  E-value=0.011  Score=56.31  Aligned_cols=40  Identities=28%  Similarity=0.435  Sum_probs=31.7

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHc----CCC-cEEEEecCCCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRM----GYD-DITIYEKNTYDM  182 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~----G~~-~V~v~e~~~~~~  182 (240)
                      ....+|+|||+||+||++|..|.+.    +.+ +|.|+|+....|
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~G  118 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVG  118 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccC
Confidence            4467899999999999999988663    322 899999987543

>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit

Probab=95.76  E-value=0.036  Score=56.22  Aligned_cols=64  Identities=17%  Similarity=0.541  Sum_probs=47.6

Q ss_pred             CChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhcccc
Q psy16201         30 LSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLY  106 (240)
Q Consensus        30 ~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~  106 (240)
                      .+..++...+++|+.|+  .|+.+||.+..+...+.....|++... ..      +...| ..|-   .|++.|+.+
T Consensus       389 P~~eeLl~~~~kCI~CG--~Cv~aCP~~l~i~e~i~~a~~G~l~~l-~~------~~d~C-~~CG---~C~evCP~g  452 (784)
T TIGR00314       389 PDDEELMELANKCTQCG--NCVRTCPNSLRVDEAMAHAQKGDLSKL-EQ------LEEQC-YACG---RCEQACPKN  452 (784)
T ss_pred             ChHHHHhhhcccCCCcc--cchhhCCCCcchHHHHHHHhcCCcccc-cc------CHhhh-hhhh---HHhccCCCC
Confidence            35678888999999999  699999999888888888888876422 11      12234 4565   699999964

Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=95.76  E-value=0.0077  Score=56.78  Aligned_cols=30  Identities=30%  Similarity=0.371  Sum_probs=28.2

Q ss_pred             EECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        150 LIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       150 ViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      |||+|.+|+++|..+++.|. +|+|+||.+.
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga-~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGA-SVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence            79999999999999999999 8999999873

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.76  E-value=0.013  Score=57.29  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=33.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||||+.|+..|..++.+|+ +|.++|+.+.
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl-~v~LvE~~D~   46 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGL-KVALVEKGDL   46 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCC-eEEEEecCcc
Confidence            56799999999999999999999999 8999999884

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=95.74  E-value=0.031  Score=52.61  Aligned_cols=69  Identities=22%  Similarity=0.283  Sum_probs=47.8

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHh-ccCceEEeCCccCcccCHHHHHhhcCCcEEEEe
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVK-GTTSRHLYGPEQGSFLNIELISEKTAYQWVYYS  225 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~-~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s  225 (240)
                      +|.|||.|-+|+++|..|.++|+ .|++.|......... ....++ ..|+.+..+.      ..+.+.   .+|.|++|
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~-~V~~sD~~~~~~~~~-~~~~~~~~~gi~~~~g~------~~~~~~---~~d~vv~s   69 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGA-EVTVTDLKPNEELEP-SMGQLRLNEGSVLHTGL------HLEDLN---NADLVVKS   69 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCC-EEEEEeCCCCccchh-HHHHHhhccCcEEEecC------chHHhc---cCCEEEEC
Confidence            48999999999999999999999 799999765432111 011223 3588877643      233342   48999998


Q ss_pred             c
Q psy16201        226 N  226 (240)
Q Consensus       226 ~  226 (240)
                      .
T Consensus        70 p   70 (433)
T TIGR01087        70 P   70 (433)
T ss_pred             C
Confidence            5

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.67  E-value=0.047  Score=51.53  Aligned_cols=68  Identities=22%  Similarity=0.284  Sum_probs=47.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEE
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYY  224 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~  224 (240)
                      +++|.|+|.|-+|++++..|++.|+ +|+++|......    ....++. |+.+..+.     ...+.+.   .+|.||.
T Consensus         6 ~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~~~~~----~~~~l~~-g~~~~~~~-----~~~~~~~---~~d~vv~   71 (438)
T PRK03806          6 GKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTRITPP----GLDKLPE-NVERHTGS-----LNDEWLL---AADLIVA   71 (438)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCCCch----hHHHHhc-CCEEEeCC-----CCHHHhc---CCCEEEE
Confidence            6789999999999999999999999 899999765321    1112333 77766543     1222232   3788888


Q ss_pred             ec
Q psy16201        225 SN  226 (240)
Q Consensus       225 s~  226 (240)
                      |.
T Consensus        72 sp   73 (438)
T PRK03806         72 SP   73 (438)
T ss_pred             CC
Confidence            74

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.66  E-value=0.029  Score=53.69  Aligned_cols=59  Identities=12%  Similarity=0.163  Sum_probs=41.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccc-------c-----chHHHhccCceEEeCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTN-------V-----SPRIVKGTTSRHLYGP  202 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~-------~-----~~~~~~~~gv~~~~~~  202 (240)
                      .+++|+|||+|..|+.+|..+.+.|.++|++++....+....       .     ....+.+.|+.+.++.
T Consensus       280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~  350 (471)
T PRK12810        280 KGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNV  350 (471)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEecc
Confidence            468999999999999999999999864688877655432111       0     1223456788887765

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.61  E-value=0.017  Score=47.97  Aligned_cols=36  Identities=19%  Similarity=0.485  Sum_probs=30.1

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|||+|-+++.+|..|++.|. +|+++=|.+
T Consensus       165 ~~~k~V~VVG~G~SA~d~a~~l~~~g~-~V~~~~R~~  200 (203)
T PF13738_consen  165 FKGKRVVVVGGGNSAVDIAYALAKAGK-SVTLVTRSP  200 (203)
T ss_dssp             CTTSEEEEE--SHHHHHHHHHHTTTCS-EEEEEESS-
T ss_pred             cCCCcEEEEcChHHHHHHHHHHHhhCC-EEEEEecCC
Confidence            457999999999999999999999997 899998764

...

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.61  E-value=0.026  Score=45.03  Aligned_cols=37  Identities=27%  Similarity=0.503  Sum_probs=33.2

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|+|+|-+|-++++.|...|.++|+|+.|..
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            4589999999999999999999999995699999864

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated

Probab=95.61  E-value=0.012  Score=59.77  Aligned_cols=65  Identities=18%  Similarity=0.433  Sum_probs=50.5

Q ss_pred             CCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhcccc
Q psy16201         29 TLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLY  106 (240)
Q Consensus        29 ~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~  106 (240)
                      -++..+...++++|+.|+  -|+.+||.+..+...++...+|++... ..      ++..| -.|.   .|++.|+.+
T Consensus       393 ~~s~eEl~~eadrCI~CG--~Cv~aCP~~l~i~~~I~~a~~G~~~~l-~~------l~~~C-t~CG---~CeeVCPtg  457 (781)
T PRK00941        393 LPTDEELKELAKKCTECG--WCVRVCPNELPIPEAMEAAAKGDLSKL-ED------LYDKC-IGCG---RCEQVCPKN  457 (781)
T ss_pred             cCcHHHHHHhhhhCcCCC--CccccCCCCcchhHHHHHHhcCChhhh-hh------hhhhc-cchh---HHhhhCCCC
Confidence            346788999999999999  699999999999999999888876431 11      23445 4666   599999964

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.60  E-value=0.015  Score=53.87  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=31.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...|.|||+|.+|-.+||.++++|+ .|.+||-++.
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv-~V~L~EMRp~   37 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGV-PVILYEMRPV   37 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCC-cEEEEEcccc
Confidence            4579999999999999999999999 7999998763

>KOG1298|consensus

Probab=95.59  E-value=0.015  Score=54.74  Aligned_cols=36  Identities=19%  Similarity=0.349  Sum_probs=32.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|.+|.+.|+.|++.|- +|+|+||...
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGR-rVhVIERDl~   79 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGR-RVHVIERDLS   79 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCc-EEEEEecccc
Confidence            34579999999999999999999999 8999999864

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=95.58  E-value=0.032  Score=53.00  Aligned_cols=65  Identities=20%  Similarity=0.243  Sum_probs=47.9

Q ss_pred             eEEEECCChhHHH-HHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEe
Q psy16201        147 KIALIGCGPASLS-CATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYS  225 (240)
Q Consensus       147 ~VaViG~G~~Gl~-~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s  225 (240)
                      ++.+||.|-+|++ +|..|+++|+ +|+++|.....     ....++..|+.+..+.      +.+.+.   .+|.|++|
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~-~v~~~D~~~~~-----~~~~l~~~gi~~~~g~------~~~~~~---~~d~vV~s   65 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGY-QVSGSDIAENA-----TTKRLEALGIPIYIGH------SAENLD---DADVVVVS   65 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCC-eEEEECCCcch-----HHHHHHHCcCEEeCCC------CHHHCC---CCCEEEEC
Confidence            4789999999998 8999999999 79999976543     2234666788876542      223332   38999988


Q ss_pred             c
Q psy16201        226 N  226 (240)
Q Consensus       226 ~  226 (240)
                      .
T Consensus        66 p   66 (448)
T TIGR01082        66 A   66 (448)
T ss_pred             C
Confidence            4

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=95.55  E-value=0.016  Score=57.49  Aligned_cols=32  Identities=28%  Similarity=0.361  Sum_probs=30.0

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||+|++|+.+|..++++|. +|+++|+..
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~-~v~Lie~~~   33 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGA-KTLLLTLNL   33 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCC-CEEEEeccc
Confidence            69999999999999999999999 799999863

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=95.55  E-value=0.013  Score=56.21  Aligned_cols=39  Identities=8%  Similarity=0.054  Sum_probs=35.0

Q ss_pred             hhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHH
Q psy16201         37 KEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAK   77 (240)
Q Consensus        37 ~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~   77 (240)
                      .+...|+.|+  -|+.+||.++.+-.+++++..+++++|-+
T Consensus       371 ~~~~~CI~Cg--~C~~vCP~~L~P~~l~ra~~~~d~~~~e~  409 (448)
T PRK05352        371 GSERAMVPIG--NYERVMPLDILPTQLLRALIVGDTDEAQA  409 (448)
T ss_pred             CCCcceeecC--cHhhcCCCCCCHHHHHHHHHcCCHHHHHH
Confidence            4567899999  69999999999999999999999988754

>PRK07512 L-aspartate oxidase; Provisional

Probab=95.52  E-value=0.016  Score=56.21  Aligned_cols=33  Identities=18%  Similarity=0.246  Sum_probs=29.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||+||..++  |. +|+|+||...
T Consensus         9 ~~DVlVIG~G~AGl~AAl~Aa--~~-~V~lleK~~~   41 (513)
T PRK07512          9 TGRPVIVGGGLAGLMAALKLA--PR-PVVVLSPAPL   41 (513)
T ss_pred             cCCEEEECchHHHHHHHHHhC--cC-CEEEEECCCC
Confidence            569999999999999999986  67 7999999875

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=95.50  E-value=0.02  Score=56.43  Aligned_cols=36  Identities=22%  Similarity=0.342  Sum_probs=33.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|.+||.||..++.+|. +|.++||...
T Consensus         5 ~~~DvvVIG~G~AGl~AAi~aa~~g~-~V~l~~K~~~   40 (562)
T COG1053           5 HEFDVVVIGGGGAGLRAAIEAAEAGL-KVALLSKAPP   40 (562)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhcCC-cEEEEEcccc
Confidence            35689999999999999999999999 8999999874

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.50  E-value=0.11  Score=39.53  Aligned_cols=74  Identities=16%  Similarity=0.215  Sum_probs=49.0

Q ss_pred             EEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHh--hcCCcEEEEe
Q psy16201        148 IALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISE--KTAYQWVYYS  225 (240)
Q Consensus       148 VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~--~s~~d~V~~s  225 (240)
                      |+|+|.|..|...+..|.+.+. +|+++|..+.-      ...++..++.+..|..    .+.+.|.+  .+..++|+..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~------~~~~~~~~~~~i~gd~----~~~~~l~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPER------VEELREEGVEVIYGDA----TDPEVLERAGIEKADAVVIL   69 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHH------HHHHHHTTSEEEES-T----TSHHHHHHTTGGCESEEEEE
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHH------HHHHHhcccccccccc----hhhhHHhhcCccccCEEEEc
Confidence            6899999999999999999887 79999977532      2334556777776653    23333332  2246777777


Q ss_pred             cccchhh
Q psy16201        226 NCKVLSN  232 (240)
Q Consensus       226 ~~~~~~~  232 (240)
                      +.....+
T Consensus        70 ~~~d~~n   76 (116)
T PF02254_consen   70 TDDDEEN   76 (116)
T ss_dssp             SSSHHHH
T ss_pred             cCCHHHH
Confidence            6555443

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.49  E-value=0.017  Score=52.21  Aligned_cols=33  Identities=21%  Similarity=0.513  Sum_probs=30.8

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|+|||+|..|.+.|..|+++|+ +|++||+.+
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~   35 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP   35 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence            379999999999999999999999 899999875

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=95.47  E-value=0.014  Score=55.21  Aligned_cols=60  Identities=18%  Similarity=0.225  Sum_probs=46.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC-------------CCcEEEEecCCCc--c----ccccchHHHhccCceEEeCCccC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG-------------YDDITIYEKNTYD--M----VTNVSPRIVKGTTSRHLYGPEQG  205 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G-------------~~~V~v~e~~~~~--~----~~~~~~~~~~~~gv~~~~~~~vg  205 (240)
                      -..|+|+|+|++|...|-.|+.+-             . +|+++|+.+.-  .    +..+..+.++++||++.++..|-
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~-~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt  233 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSEL-RVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVT  233 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCcccc-EEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceE
Confidence            357999999999999987765531             3 69999998852  1    44455678899999999988664

>TIGR03452 mycothione_red mycothione reductase

Probab=95.45  E-value=0.019  Score=54.65  Aligned_cols=35  Identities=23%  Similarity=0.236  Sum_probs=29.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+||+|..+|..  ..|. +|.++|+...||
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~-~V~lie~~~~GG   36 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADK-RIAIVEKGTFGG   36 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCC-eEEEEeCCCCCC
Confidence            4689999999999988654  4699 899999977665

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07846 mycothione reductase; Reviewed

Probab=95.41  E-value=0.02  Score=54.63  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=28.8

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .+|+|||+||+|.++|..  +.|. +|.++|+...||
T Consensus         2 yD~vVIG~G~~g~~aa~~--~~G~-~V~lie~~~~GG   35 (451)
T PRK07846          2 YDLIIIGTGSGNSILDER--FADK-RIAIVEKGTFGG   35 (451)
T ss_pred             CCEEEECCCHHHHHHHHH--HCCC-eEEEEeCCCCCC
Confidence            479999999999988865  4699 899999977665

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=95.39  E-value=0.024  Score=53.72  Aligned_cols=35  Identities=31%  Similarity=0.521  Sum_probs=31.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~  180 (240)
                      .++|+|||+|.+|+.++..|.++-  + +|+++|+++.
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~-~itLVd~~~~   39 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDV-EITLVDRRDY   39 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCC-cEEEEeCCCc
Confidence            579999999999999999999974  8 7999999884

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.39  E-value=0.02  Score=51.17  Aligned_cols=34  Identities=18%  Similarity=0.343  Sum_probs=31.1

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ++|+|||+|..|...|..|+++|+ +|+++|+++.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~   35 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQE   35 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHH
Confidence            479999999999999999999999 7999998753

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.38  E-value=0.022  Score=49.56  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=31.4

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ++++|+|+|..|.+.|..|.+.|+ +|+++|+...
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~   34 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEE   34 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHH
Confidence            479999999999999999999999 8999998763

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.35  E-value=0.044  Score=52.13  Aligned_cols=66  Identities=17%  Similarity=0.179  Sum_probs=45.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY  223 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~  223 (240)
                      .+++|.|+|.|-+|+++|.+|.++|+ +|+++|......      ..++..|+++..       ...+.+.   .+|.|+
T Consensus         8 ~~~~i~viG~G~~G~~~a~~l~~~G~-~v~~~D~~~~~~------~~l~~~g~~~~~-------~~~~~~~---~~d~vv   70 (460)
T PRK01390          8 AGKTVAVFGLGGSGLATARALVAGGA-EVIAWDDNPASR------AKAAAAGITTAD-------LRTADWS---GFAALV   70 (460)
T ss_pred             CCCEEEEEeecHhHHHHHHHHHHCCC-EEEEECCChhhH------HHHHhcCccccC-------CChhHHc---CCCEEE
Confidence            46799999999999999999999999 799999653211      123445665321       1122232   489999


Q ss_pred             Eec
Q psy16201        224 YSN  226 (240)
Q Consensus       224 ~s~  226 (240)
                      .|.
T Consensus        71 ~sp   73 (460)
T PRK01390         71 LSP   73 (460)
T ss_pred             ECC
Confidence            885

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.33  E-value=0.022  Score=52.37  Aligned_cols=34  Identities=18%  Similarity=0.226  Sum_probs=31.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -++|+|||+|..|..-|..++..|+ +|++||..+
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~   40 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAP   40 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            4689999999999999999999999 899999875

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.32  E-value=0.044  Score=56.09  Aligned_cols=66  Identities=23%  Similarity=0.279  Sum_probs=49.6

Q ss_pred             CeEEEECCChhHHHH-HHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEE
Q psy16201        146 TKIALIGCGPASLSC-ATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYY  224 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~-a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~  224 (240)
                      ++|.|+|.|-+|+++ |..|+++|+ +|++.|......     ...++..|+.+..+..      .+.+.   .+|.|++
T Consensus         5 ~~i~viG~G~sG~salA~~L~~~G~-~V~~sD~~~~~~-----~~~L~~~gi~~~~g~~------~~~~~---~~d~vV~   69 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHILLDRGY-SVSGSDLSEGKT-----VEKLKAKGARFFLGHQ------EEHVP---EDAVVVY   69 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHHHHCCC-eEEEECCCCChH-----HHHHHHCCCEEeCCCC------HHHcC---CCCEEEE
Confidence            479999999999999 999999999 799999765432     2236667888876541      13332   3899998


Q ss_pred             ec
Q psy16201        225 SN  226 (240)
Q Consensus       225 s~  226 (240)
                      |.
T Consensus        70 Sp   71 (809)
T PRK14573         70 SS   71 (809)
T ss_pred             CC
Confidence            85

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.29  E-value=0.018  Score=43.79  Aligned_cols=36  Identities=19%  Similarity=0.422  Sum_probs=31.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -++++|+|||+|..|..-+..|.+.|. +|+|+....
T Consensus         5 l~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~   40 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI   40 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch
Confidence            358899999999999999999999999 899998664

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=95.27  E-value=0.013  Score=56.14  Aligned_cols=40  Identities=8%  Similarity=0.131  Sum_probs=35.4

Q ss_pred             hhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHH
Q psy16201         37 KEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKA   78 (240)
Q Consensus        37 ~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~   78 (240)
                      .+...|+.|+  -|+.+||+++.+..+++++..+|+++|.++
T Consensus       370 ~~~~aCI~CG--~C~~vCPm~L~P~~L~~a~~~~d~d~a~~l  409 (447)
T TIGR01936       370 GGERAMIPIG--IYERVMPLDIPPTLLLKALIAGDFDKAQRL  409 (447)
T ss_pred             CCccceeECC--hHhhcCCCCCCHHHHHHHHHcCCHHHHHHC
Confidence            4566799999  699999999999999999999999987554

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.26  E-value=0.05  Score=54.41  Aligned_cols=59  Identities=19%  Similarity=0.234  Sum_probs=40.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccch--HHHhccCceEEeCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSP--RIVKGTTSRHLYGP  202 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~--~~~~~~gv~~~~~~  202 (240)
                      .+++|+|||+|..|+.+|..|.+.|.++|+++.+.....+.....  ......|++|.++.
T Consensus       322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~~~  382 (652)
T PRK12814        322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRELA  382 (652)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEecc
Confidence            468999999999999999999999974699998765422111111  11134677776654

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=95.24  E-value=0.02  Score=51.59  Aligned_cols=28  Identities=32%  Similarity=0.464  Sum_probs=25.1

Q ss_pred             hhHHHHHHHHHHcCCCcEEEEecCCCccc
Q psy16201        155 PASLSCATFLSRMGYDDITIYEKNTYDMV  183 (240)
Q Consensus       155 ~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~  183 (240)
                      ++||+||+.|+++|+ +|+|||+.++.|.
T Consensus         1 iaGL~aA~~L~~~G~-~v~vlEa~~r~GG   28 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGY-DVTVLEASDRVGG   28 (450)
T ss_dssp             HHHHHHHHHHHHTTT-EEEEEESSSSSBT
T ss_pred             ChHHHHHHHHHhCCC-CEEEEEcCCCCCc
Confidence            589999999999999 8999999997553

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK04148 hypothetical protein; Provisional

Probab=95.23  E-value=0.023  Score=45.85  Aligned_cols=35  Identities=26%  Similarity=0.428  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ++++|++||.| +|...|..|++.|+ +|+.+|.++.
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~   50 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK   50 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH
Confidence            35789999999 99999999999999 8999997764

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.20  E-value=0.023  Score=51.06  Aligned_cols=34  Identities=21%  Similarity=0.492  Sum_probs=31.4

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ++|+|||+|..|...|..+++.|+ +|++||..+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~   39 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEE   39 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHH
Confidence            489999999999999999999999 8999998764

>TIGR01810 betA choline dehydrogenase

Probab=95.20  E-value=0.019  Score=55.71  Aligned_cols=32  Identities=25%  Similarity=0.215  Sum_probs=29.6

Q ss_pred             eEEEECCChhHHHHHHHHHHcC-CCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMG-YDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~  179 (240)
                      +++|||+|.+|+.+|..|++.| + +|.|+|+..
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~-~VlvlEaG~   33 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSN-SVLVLEAGG   33 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCC-eEEEEecCC
Confidence            4799999999999999999998 8 799999975

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.18  E-value=0.026  Score=50.44  Aligned_cols=33  Identities=24%  Similarity=0.424  Sum_probs=30.7

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|+|||+|..|.+.|..|++.|+ +|+++|...
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            489999999999999999999999 799999875

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.10  E-value=0.032  Score=44.21  Aligned_cols=35  Identities=26%  Similarity=0.490  Sum_probs=31.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +++|+|+|+|-.|...|..|++.|..+++++|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            57999999999999999999999987899999765

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.08  E-value=0.032  Score=49.88  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=31.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -++|+|||+|..|...|..|+++|+ +|+++|+..
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~   37 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSA   37 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            3589999999999999999999999 799999875

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.06  E-value=0.039  Score=45.54  Aligned_cols=35  Identities=17%  Similarity=0.441  Sum_probs=29.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...+|+|+|+|.+|..|+..|...|+ +|+++|...
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCH
Confidence            35799999999999999999999999 899999754

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.97  E-value=0.031  Score=50.06  Aligned_cols=34  Identities=29%  Similarity=0.521  Sum_probs=31.2

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ++|+|||+|..|...|..|++.|+ +|+++|+.+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHH
Confidence            579999999999999999999999 8999998753

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.95  E-value=0.063  Score=53.59  Aligned_cols=59  Identities=10%  Similarity=0.231  Sum_probs=41.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc--cccchHHHhccCceEEeCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV--TNVSPRIVKGTTSRHLYGP  202 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~--~~~~~~~~~~~gv~~~~~~  202 (240)
                      .+++|+|||+|..|+.+|..+.+.|.++|+++.+.+....  +......+.+.|++|.++.
T Consensus       467 ~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~  527 (654)
T PRK12769        467 AGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNV  527 (654)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEEecc
Confidence            4689999999999999999999999756999887653211  1111123456777776654

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=94.90  E-value=0.11  Score=48.03  Aligned_cols=37  Identities=22%  Similarity=0.442  Sum_probs=33.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|+|||+|-.|..+|..|++.|+.+++|+|...
T Consensus        22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            3567999999999999999999999987899999875

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.80  E-value=0.086  Score=50.55  Aligned_cols=59  Identities=12%  Similarity=0.258  Sum_probs=41.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcccccc--chHHHhccCceEEeCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNV--SPRIVKGTTSRHLYGP  202 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~--~~~~~~~~gv~~~~~~  202 (240)
                      .+++|+|||+|..|+.+|..+.+.|.++|+|+++.+...+...  .-..+.+.|+.|.++.
T Consensus       281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~  341 (467)
T TIGR01318       281 EGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANAREEGVEFLFNV  341 (467)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHHHHHHhcCCEEEecC
Confidence            4689999999999999999999999636999998654221110  1122346677776664

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG1335|consensus

Probab=94.80  E-value=0.038  Score=52.11  Aligned_cols=36  Identities=25%  Similarity=0.393  Sum_probs=33.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+.+|+|||+||.|..+|...++.|+ ....+|++..
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGl-kTacvEkr~~   73 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGL-KTACVEKRGT   73 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcc-eeEEEeccCc
Confidence            57899999999999999999999999 7999999764

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.80  E-value=0.051  Score=44.71  Aligned_cols=35  Identities=20%  Similarity=0.281  Sum_probs=31.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      -.+++|+|||+|..|..-+..|.+.|+ +|+|+...
T Consensus        11 l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~   45 (157)
T PRK06719         11 LHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPE   45 (157)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCc
Confidence            568999999999999999999999999 89999533

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=94.76  E-value=0.04  Score=53.25  Aligned_cols=36  Identities=39%  Similarity=0.523  Sum_probs=31.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc----CCCcEEEEecCCCc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM----GYDDITIYEKNTYD  181 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~----G~~~V~v~e~~~~~  181 (240)
                      ++++-|||+|+++|++|.+|-|-    |- +|+|+|+.+..
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~-nIhIlE~~~~~   41 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGE-NIHILEELDVP   41 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCcc-ceEEEeCCCCC
Confidence            57889999999999999999885    45 89999998853

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=94.74  E-value=0.042  Score=50.88  Aligned_cols=34  Identities=29%  Similarity=0.530  Sum_probs=29.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +.+|+|||+|.+|++|+..|.++|. ++.|+-+..
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk-~c~iv~~gQ   35 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGK-RCAIVNRGQ   35 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCC-cEEEEeCCh
Confidence            3579999999999999999999999 677776543

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=94.58  E-value=0.004  Score=60.93  Aligned_cols=41  Identities=37%  Similarity=0.790  Sum_probs=34.0

Q ss_pred             ccccCcccccccCCChhhhHhhhcccCcCCC----CccccCCCCCC
Q psy16201         17 SLVNNFDDIKHTTLSERGALKEASRCLKCAD----APCQKSCPTQI   58 (240)
Q Consensus        17 ~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~----~~C~~aCP~~~   58 (240)
                      ++..+|.++ ...+++.++..++.||+.|..    ..|+..||.+.
T Consensus       482 ~r~~~f~~~-~~~~~~~~~~~~~~rCl~C~~c~~C~~C~~~Cp~~a  526 (564)
T PRK12771        482 ERVGDFDEV-LGGLTEEEARQEAARCLSCGNCFECDNCYGACPQDA  526 (564)
T ss_pred             HHhcChhhh-hccCChhhhhhhcccCcccccccccchhhhhCChhh
Confidence            467889987 779999999999999999931    35999999764

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.53  E-value=0.21  Score=47.05  Aligned_cols=76  Identities=17%  Similarity=0.151  Sum_probs=46.5

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEe
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYS  225 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s  225 (240)
                      ++|+|+|+|..|...|..|.+.|+ .|+++|++...     .....+..++++..+... ....++.+. ....++|+.+
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~~-----~~~~~~~~~~~~~~gd~~-~~~~l~~~~-~~~a~~vi~~   72 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEER-----LRRLQDRLDVRTVVGNGS-SPDVLREAG-AEDADLLIAV   72 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHHH-----HHHHHhhcCEEEEEeCCC-CHHHHHHcC-CCcCCEEEEe
Confidence            379999999999999999999999 79999986431     111112245665554321 111122221 1246777776


Q ss_pred             cccc
Q psy16201        226 NCKV  229 (240)
Q Consensus       226 ~~~~  229 (240)
                      +.+.
T Consensus        73 ~~~~   76 (453)
T PRK09496         73 TDSD   76 (453)
T ss_pred             cCCh
Confidence            5443

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.51  E-value=0.17  Score=47.86  Aligned_cols=33  Identities=24%  Similarity=0.455  Sum_probs=30.7

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|.|+|+|..||+.|.-|++.|| +|+.+|...
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GH-eVv~vDid~   33 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGH-EVVCVDIDE   33 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCC-eEEEEeCCH
Confidence            379999999999999999999999 799999876

>KOG1336|consensus

Probab=94.51  E-value=0.069  Score=51.26  Aligned_cols=59  Identities=12%  Similarity=0.137  Sum_probs=47.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc-------cccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV-------TNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~-------~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      +.+|+++|+|..|+.+|..|..+++ +||++++.+....       ...+...+++.|+.|.+++.+
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~-~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~  278 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAK-SVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVV  278 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCc-eEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecce
Confidence            5679999999999999999999999 8999999886432       223345668899999887743

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=94.50  E-value=0.099  Score=54.94  Aligned_cols=59  Identities=14%  Similarity=0.236  Sum_probs=41.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccch--HHHhccCceEEeCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSP--RIVKGTTSRHLYGP  202 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~--~~~~~~gv~~~~~~  202 (240)
                      .+++|+|||+|..|+-+|..+.+.|.+.|+++.+...........  +.+.+.|+.|.++.
T Consensus       570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~~~~  630 (1006)
T PRK12775        570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFFLH  630 (1006)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecC
Confidence            468999999999999999999999985588777654322211111  23456677776654

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.50  E-value=0.059  Score=44.17  Aligned_cols=33  Identities=33%  Similarity=0.686  Sum_probs=28.7

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.|||.|..|...|..|.++|+ +|++||+..
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~   34 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSP   34 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccch
Confidence            489999999999999999999999 899999775

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=94.48  E-value=0.091  Score=54.85  Aligned_cols=35  Identities=26%  Similarity=0.436  Sum_probs=31.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++|+|||+|..|+-+|..+.+.|. +|+++.+..
T Consensus       446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga-~Vtlv~rr~  480 (944)
T PRK12779        446 KGKEVFVIGGGNTAMDAARTAKRLGG-NVTIVYRRT  480 (944)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEecC
Confidence            46899999999999999999999999 799998765

>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]

Probab=94.48  E-value=0.086  Score=49.20  Aligned_cols=75  Identities=20%  Similarity=0.344  Sum_probs=47.2

Q ss_pred             ccCcCCCCccccCCCCCCChHHHHHHHhc----CCHHHH---HHHHHhh-CCCCcccc--ccCCCCCchhhhccccccCC
Q psy16201         41 RCLKCADAPCQKSCPTQIDIKSFITSISH----KNYYGA---AKAIFSD-NPLGLTCG--MVCPTSDLCMGGCNLYAAEE  110 (240)
Q Consensus        41 rC~~c~~~~C~~aCP~~~di~~~i~~i~~----g~~~~A---~~~i~~~-np~p~~cg--rvC~~~~~Ce~~C~r~~~~~  110 (240)
                      .|..|.  .|+- ||.++|||.+.++...    ++.+.|   +..+... --||+--|  -.|.....|+..||.     
T Consensus       294 ~Ct~C~--yC~P-CP~gInIP~~f~lyN~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~g~as~CieCgqCl~~CPq-----  365 (391)
T COG1453         294 PCTGCR--YCLP-CPSGINIPEIFRLYNLAVAFDDVDYAKFRYNMLENGGHWFPGPKGKASDCIECGQCLEKCPQ-----  365 (391)
T ss_pred             CCcccc--ccCc-CCCCCChHHHHHHHHHHHhhccchhhHHHHHHHhccCccCCCCcccccccchhhhhhhcCCC-----
Confidence            499998  7888 9999999999887643    666555   2333332 11333322  233344579999995     


Q ss_pred             CccccchhhHHHHH
Q psy16201        111 GPINIGGLQQFATE  124 (240)
Q Consensus       111 ~pV~I~~l~r~~~~  124 (240)
                       .+.|..+-+-+.+
T Consensus       366 -~l~Ip~~Lk~v~~  378 (391)
T COG1453         366 -HLDIPELLKEVHE  378 (391)
T ss_pred             -cCcHHHHHHHHHH
Confidence             3557766555544

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.48  E-value=0.064  Score=42.77  Aligned_cols=31  Identities=29%  Similarity=0.479  Sum_probs=28.8

Q ss_pred             EEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        148 IALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       148 VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      |+|+|+|-.|...|+.|++.|+ +|+++.+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc
Confidence            7899999999999999999999 899998765

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=94.45  E-value=0.051  Score=50.62  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=32.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||.+|..|+..|. +|.|+|+...
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~-~V~ildQEge   39 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGK-RVLILDQEGE   39 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCc-eEEEEccccc
Confidence            5689999999999999999999999 8999998763

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.45  E-value=0.051  Score=48.37  Aligned_cols=34  Identities=26%  Similarity=0.448  Sum_probs=30.9

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ++|+|||+|..|...|..|++.|+ +|+++|.++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHH
Confidence            479999999999999999999999 7999997653

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.37  E-value=0.049  Score=51.60  Aligned_cols=33  Identities=21%  Similarity=0.244  Sum_probs=31.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|+|||.|..|+..|..|+++|+ +|++||+++
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~   36 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQ   36 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCH
Confidence            589999999999999999999999 899999865

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.34  E-value=0.069  Score=45.69  Aligned_cols=35  Identities=20%  Similarity=0.346  Sum_probs=32.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ...+|+|||+|-.|...|..|++.|+.+++++|..
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46799999999999999999999998569999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.33  E-value=0.063  Score=51.63  Aligned_cols=35  Identities=29%  Similarity=0.351  Sum_probs=29.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHcC-CC-cEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMG-YD-DITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G-~~-~V~v~e~~~~  180 (240)
                      ++|||||+|++|+.+|.+|.+.- .. .|.|||+...
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~   38 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN   38 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence            58999999999999999998852 21 4999998875

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=94.25  E-value=0.32  Score=35.69  Aligned_cols=74  Identities=18%  Similarity=0.157  Sum_probs=47.7

Q ss_pred             eEEEECCChhHHHHHHHHHHcC---CCcEEEE-ecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201        147 KIALIGCGPASLSCATFLSRMG---YDDITIY-EKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV  222 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G---~~~V~v~-e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V  222 (240)
                      +|.|||+|-.|.+.+.-|.+.|   + +|+++ ++++..     ..+..+..++.+..       .+..++.+.  .|.|
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~-----~~~~~~~~~~~~~~-------~~~~~~~~~--advv   65 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEK-----AAELAKEYGVQATA-------DDNEEAAQE--ADVV   65 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHH-----HHHHHHHCTTEEES-------EEHHHHHHH--TSEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHH-----HHHHHHhhcccccc-------CChHHhhcc--CCEE
Confidence            6899999999999999999999   8 79855 766532     12233445555442       133444444  8999


Q ss_pred             EEec-ccchhhHHH
Q psy16201        223 YYSN-CKVLSNTRT  235 (240)
Q Consensus       223 ~~s~-~~~~~~l~~  235 (240)
                      |++- .+....+-.
T Consensus        66 ilav~p~~~~~v~~   79 (96)
T PF03807_consen   66 ILAVKPQQLPEVLS   79 (96)
T ss_dssp             EE-S-GGGHHHHHH
T ss_pred             EEEECHHHHHHHHH
Confidence            9994 555544443

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.23  E-value=0.079  Score=45.20  Aligned_cols=36  Identities=19%  Similarity=0.300  Sum_probs=32.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|+|.|-.|..+|..|.+.|+ +|+++|.+.
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~   61 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINE   61 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            457899999999999999999999999 799999764

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=94.20  E-value=0.1  Score=47.73  Aligned_cols=83  Identities=16%  Similarity=0.147  Sum_probs=51.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHH----cC--CCcEEEEecCCC-c----cccccchHHHhccCceEEeCCccCcc----c
Q psy16201        144 PDTKIALIGCGPASLSCATFLSR----MG--YDDITIYEKNTY-D----MVTNVSPRIVKGTTSRHLYGPEQGSF----L  208 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~----~G--~~~V~v~e~~~~-~----~~~~~~~~~~~~~gv~~~~~~~vg~~----i  208 (240)
                      ..++|+|||+|++|+..|..|++    +|  . +|+++..... .    .+.....+.+++.|+++.++..+-..    +
T Consensus       144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~-~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v  222 (364)
T TIGR03169       144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRG-QVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGAL  222 (364)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHHHHhcCCCc-eEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCCeE
Confidence            35799999999999999998875    35  4 6999943221 1    12223345667889999887644221    1


Q ss_pred             CHHHHHhhcCCcEEEEeccc
Q psy16201        209 NIELISEKTAYQWVYYSNCK  228 (240)
Q Consensus       209 ~~e~L~~~s~~d~V~~s~~~  228 (240)
                      .+++=.. -.+|.|+++...
T Consensus       223 ~~~~g~~-i~~D~vi~a~G~  241 (364)
T TIGR03169       223 ILADGRT-LPADAILWATGA  241 (364)
T ss_pred             EeCCCCE-EecCEEEEccCC
Confidence            1110001 136888888643

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG1335|consensus

Probab=94.16  E-value=0.036  Score=52.28  Aligned_cols=60  Identities=20%  Similarity=0.325  Sum_probs=48.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-cc-----ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DM-----VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~-----~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      -.++.+|||+|..||..+-.-.+.|- +||++|-.+. ++     +.....+.+...|+.|.+++.+
T Consensus       210 vPk~~~viG~G~IGLE~gsV~~rLGs-eVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv  275 (506)
T KOG1335|consen  210 VPKKLTVIGAGYIGLEMGSVWSRLGS-EVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKV  275 (506)
T ss_pred             CcceEEEEcCceeeeehhhHHHhcCC-eEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEE
Confidence            35789999999999999999899999 7999998774 22     3334567788899999888754

>KOG0404|consensus

Probab=94.14  E-value=0.052  Score=47.94  Aligned_cols=34  Identities=24%  Similarity=0.507  Sum_probs=30.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+||++-++|.++++... +-++||.--
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaarael-kPllfEG~~   41 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAEL-KPLLFEGMM   41 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhccc-CceEEeeee
Confidence            4589999999999999999999999 799999743

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.12  E-value=0.088  Score=47.64  Aligned_cols=35  Identities=23%  Similarity=0.489  Sum_probs=31.5

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...+|+|||+|-.|...|..|++.|+ +|+++.+..
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~   38 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD   38 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence            34689999999999999999999999 799998764

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.12  E-value=0.064  Score=52.27  Aligned_cols=36  Identities=22%  Similarity=0.440  Sum_probs=32.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+.+|+|+|+|++|+.++..+...|. .|+++|.++
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~  198 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRP  198 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            457899999999999999999999999 799999765

>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N

Probab=94.11  E-value=0.0059  Score=41.05  Aligned_cols=56  Identities=20%  Similarity=0.557  Sum_probs=29.2

Q ss_pred             hhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhcccc
Q psy16201         38 EASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLY  106 (240)
Q Consensus        38 ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~  106 (240)
                      |.++|+.|+  -|+.+||+......+....+.+......+..       ..| ..|-   .|+..||.+
T Consensus         1 d~~~Ci~Cg--~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~-------~~C-~~C~---~C~~~CP~~   56 (57)
T PF13183_consen    1 DLSKCIRCG--ACTSVCPVYRNTGRFSHPPRDRRSAVLREEA-------WSC-TTCG---ACSEVCPVG   56 (57)
T ss_dssp             HHHC--S-S--HHHHCSHHHHHHHHHHTSTTS--HHHHHHHH-------GG---------HHHHH-TT-
T ss_pred             CHHHccCcc--ChHHHChhhhcccccccCcchhHHHhhcccc-------cCC-cCcC---CccCcCccc
Confidence            467899998  7999999877777666555555444211111       333 3555   699999853

...

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.08  E-value=0.074  Score=47.22  Aligned_cols=32  Identities=28%  Similarity=0.464  Sum_probs=29.5

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||+|..|...|..|++.|+ +|+++++..
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCh
Confidence            69999999999999999999999 799999843

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.05  E-value=0.072  Score=47.96  Aligned_cols=34  Identities=21%  Similarity=0.418  Sum_probs=30.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -++|+|||+|..|...|..|++.|+ +|+++|+..
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~   37 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARKGL-QVVLIDVME   37 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            3589999999999999999999999 799999765

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=94.04  E-value=0.092  Score=47.01  Aligned_cols=34  Identities=18%  Similarity=0.393  Sum_probs=31.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -++|+|||+|..|...|..|++.|+ +|+++|+..
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~   37 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP   37 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            3579999999999999999999999 899999875

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=94.02  E-value=0.061  Score=52.72  Aligned_cols=36  Identities=22%  Similarity=0.301  Sum_probs=32.7

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ....+++|||+|.+|..+|..|+..|+ +|.|+|+..
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~-~VllLEaG~   40 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGL-SVLVLEAGG   40 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCC-eEEEEeCCC
Confidence            446799999999999999999999999 899999884

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=93.95  E-value=0.34  Score=47.49  Aligned_cols=75  Identities=15%  Similarity=0.180  Sum_probs=49.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHh--hcCCcEE
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISE--KTAYQWV  222 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~--~s~~d~V  222 (240)
                      .-+|+|+|.|..|...|..|.++|+ +|+++|+++.-      -+..++.|.....|..    -+.+.|.+  -+..|+|
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~------~~~~~~~g~~~i~GD~----~~~~~L~~a~i~~a~~v  485 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTR------VDELRERGIRAVLGNA----ANEEIMQLAHLDCARWL  485 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHH------HHHHHHCCCeEEEcCC----CCHHHHHhcCccccCEE
Confidence            4689999999999999999999999 79999987531      1223345666666552    12222221  1135666


Q ss_pred             EEecccch
Q psy16201        223 YYSNCKVL  230 (240)
Q Consensus       223 ~~s~~~~~  230 (240)
                      +.+..+..
T Consensus       486 iv~~~~~~  493 (558)
T PRK10669        486 LLTIPNGY  493 (558)
T ss_pred             EEEcCChH
Confidence            66654443

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=93.95  E-value=0.1  Score=54.65  Aligned_cols=58  Identities=14%  Similarity=0.093  Sum_probs=44.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      .+++|+|||+|+.|+..|..|++.|.+.|+|+|..+...  ....+.++..|++++.+..
T Consensus       316 ~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~--~~l~~~L~~~GV~i~~~~~  373 (985)
T TIGR01372       316 PGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS--PEARAEARELGIEVLTGHV  373 (985)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh--HHHHHHHHHcCCEEEcCCe
Confidence            468999999999999999999999953689999765431  1133456777888877653

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.95  E-value=0.085  Score=50.14  Aligned_cols=36  Identities=19%  Similarity=0.333  Sum_probs=32.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|+|.|+.|+.+|..+...|. +|+++|..+
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~  235 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP  235 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence            358899999999999999999999999 799998765

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=93.92  E-value=0.092  Score=47.25  Aligned_cols=36  Identities=22%  Similarity=0.446  Sum_probs=32.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++|+|+|+|-+|.++++.|++.|..+|+|++|..
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            468999999999999999999999986799999874

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.92  E-value=0.33  Score=42.45  Aligned_cols=74  Identities=16%  Similarity=0.139  Sum_probs=49.2

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcE
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQW  221 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~  221 (240)
                      ...+++|+|||||..++.=+..|.+.|. +|+|+-..-.+.+    ........+++...     ....++|.   +++.
T Consensus        22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~el----~~l~~~~~i~~~~r-----~~~~~dl~---g~~L   88 (223)
T PRK05562         22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSKEF----LDLKKYGNLKLIKG-----NYDKEFIK---DKHL   88 (223)
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCHHH----HHHHhCCCEEEEeC-----CCChHHhC---CCcE
Confidence            3568899999999999999999999999 7999965433221    11222233454432     24555553   4888


Q ss_pred             EEEeccc
Q psy16201        222 VYYSNCK  228 (240)
Q Consensus       222 V~~s~~~  228 (240)
                      ||.++.+
T Consensus        89 ViaATdD   95 (223)
T PRK05562         89 IVIATDD   95 (223)
T ss_pred             EEECCCC
Confidence            8888643

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.90  E-value=0.071  Score=50.21  Aligned_cols=32  Identities=34%  Similarity=0.520  Sum_probs=30.1

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||.|..|+..|..|++.|+ +|++||+..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCC-eEEEEECCH
Confidence            69999999999999999999999 799999865

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.89  E-value=0.086  Score=46.97  Aligned_cols=30  Identities=27%  Similarity=0.440  Sum_probs=28.7

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEK  177 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~  177 (240)
                      +|+|+|+|..|...|..|++.|+ +|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence            69999999999999999999999 7999997

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.87  E-value=0.091  Score=49.09  Aligned_cols=35  Identities=23%  Similarity=0.402  Sum_probs=31.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...+|+|+|+|.+|+.++..|.+.|. +|+++|+..
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~  200 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINI  200 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence            45679999999999999999999999 799999764

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional

Probab=93.87  E-value=0.29  Score=47.08  Aligned_cols=25  Identities=24%  Similarity=0.812  Sum_probs=19.8

Q ss_pred             hhhhHhhhcccCcCCCCccccCCCCCC
Q psy16201         32 ERGALKEASRCLKCADAPCQKSCPTQI   58 (240)
Q Consensus        32 ~~~~~~ea~rC~~c~~~~C~~aCP~~~   58 (240)
                      ..+...+...|+.|+  -|+.+||+-.
T Consensus       125 ~~~~~~~~~~Ci~CG--~C~~~CP~~~  149 (486)
T PRK06259        125 DIEDIKKLRGCIECL--SCVSTCPARK  149 (486)
T ss_pred             HHHHHhCchhcccCc--cccccCCCCc
Confidence            334556778999999  7999999764

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=93.87  E-value=0.097  Score=47.38  Aligned_cols=35  Identities=17%  Similarity=0.436  Sum_probs=32.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++|.|+|.|.+|..++..|.+.|. +|+++++..
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~  185 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKS  185 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            57899999999999999999999999 899999875

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=93.85  E-value=0.15  Score=46.42  Aligned_cols=60  Identities=17%  Similarity=0.257  Sum_probs=43.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhcc-CceEEeCCc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGT-TSRHLYGPE  203 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~-gv~~~~~~~  203 (240)
                      ..+++|+|||+|-+++.-|.+|++.+- +|+++=|.+.......+.+.+.+. .+.+.++..
T Consensus       141 ~~~k~v~ViGgG~sAve~Al~L~~~a~-~Vtlv~r~~~~ra~~~~~~~l~~~~~i~~~~~~~  201 (305)
T COG0492         141 FKGKDVVVIGGGDSAVEEALYLSKIAK-KVTLVHRRDEFRAEEILVERLKKNVKIEVLTNTV  201 (305)
T ss_pred             ccCCeEEEEcCCHHHHHHHHHHHHhcC-eEEEEecCcccCcCHHHHHHHHhcCCeEEEeCCc
Confidence            467899999999999999999999999 799998887543222233333333 666666643

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.84  E-value=0.071  Score=51.06  Aligned_cols=34  Identities=26%  Similarity=0.482  Sum_probs=30.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++|+|+|.|.+|.+++..|. +|+ +|+++|...
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~-~g~-~v~v~D~~~   38 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQ-NKY-DVIVYDDLK   38 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHh-CCC-EEEEECCCC
Confidence            4689999999999999999998 499 899999543

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=93.83  E-value=0.086  Score=47.92  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=29.8

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      .+|+|||+|..|...|..|++.|+ +|+++++.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence            479999999999999999999999 79999975

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=93.78  E-value=0.094  Score=50.74  Aligned_cols=50  Identities=20%  Similarity=0.244  Sum_probs=37.0

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGP  202 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~  202 (240)
                      +|+|||+|.+||++|..|.+. + +|+|+-|...+.    ...++..-|+...++.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~-~V~vltk~~~~~----~sS~~AQGGIAa~~~~   58 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-F-RVTVLTKGPLGE----SSSYWAQGGIAAALSE   58 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-C-cEEEEeCCCCCC----ccchhhcCceEeeeCC
Confidence            799999999999999999888 8 799999887653    1223334455544433

>KOG4254|consensus

Probab=93.78  E-value=0.064  Score=51.48  Aligned_cols=37  Identities=27%  Similarity=0.559  Sum_probs=33.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ++..+++|||+|.-||.+|.+|+|.|- +|.|+|++..
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~g~-~V~vlerrhv   48 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARYGQ-SVAVLERRHV   48 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhcCc-ceEEEEEeee
Confidence            557799999999999999999999999 8999999854

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=93.70  E-value=0.12  Score=45.01  Aligned_cols=37  Identities=24%  Similarity=0.456  Sum_probs=33.2

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCC--cEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYD--DITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~--~V~v~e~~~  179 (240)
                      ..+++|+|+|+|-+|..+|..|.+.|.+  +|+++|+..
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            3568999999999999999999999996  699999983

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>KOG2853|consensus

Probab=93.69  E-value=0.077  Score=49.51  Aligned_cols=35  Identities=23%  Similarity=0.449  Sum_probs=30.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHc----CCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRM----GYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~----G~~~V~v~e~~~  179 (240)
                      ....|+|||+|.+|.+.|+.|.++    |+ +|.|+|+.+
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl-~VvVVErdd  123 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGL-NVVVVERDD  123 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCc-eEEEEeccC
Confidence            456899999999999999998663    68 899999987

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=93.67  E-value=0.083  Score=51.15  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=30.7

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|+|||+|..|...|..|++.|+ +|++||+.+
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~   37 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHP   37 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            479999999999999999999999 899999875

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.66  E-value=0.2  Score=49.98  Aligned_cols=58  Identities=10%  Similarity=0.215  Sum_probs=41.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchH---HHhccCceEEeCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPR---IVKGTTSRHLYGP  202 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~---~~~~~gv~~~~~~  202 (240)
                      .+++|+|||+|..|+.+|..+.+.|.++|+++.+.+...... .+.   ...+.|++|+++.
T Consensus       450 ~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~e~~~a~~eGv~~~~~~  510 (639)
T PRK12809        450 EGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRKEVVNAREEGVEFQFNV  510 (639)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHHHHHHHHcCCeEEecc
Confidence            468999999999999999999999964799998765322111 111   2245677777654

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.64  E-value=0.11  Score=46.91  Aligned_cols=34  Identities=21%  Similarity=0.399  Sum_probs=31.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +.+|.|||+|-.|.+.|..|++.|+ +|+++++..
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~~   37 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRRS   37 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            5689999999999999999999999 799999875

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.63  E-value=0.091  Score=49.13  Aligned_cols=37  Identities=24%  Similarity=0.353  Sum_probs=31.2

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -.+|+|+|||+|-+|+.+|..|+---. .||++|=.+.
T Consensus       352 F~gK~VAVIGGGNSGvEAAIDLAGiv~-hVtllEF~~e  388 (520)
T COG3634         352 FKGKRVAVIGGGNSGVEAAIDLAGIVE-HVTLLEFAPE  388 (520)
T ss_pred             cCCceEEEECCCcchHHHHHhHHhhhh-eeeeeecchh
Confidence            468999999999999999999976544 6999986654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=93.50  E-value=0.12  Score=46.70  Aligned_cols=36  Identities=14%  Similarity=0.377  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|+|+|.|..|...|..|...|+ +|+++++..
T Consensus       149 l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~  184 (287)
T TIGR02853       149 IHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSS  184 (287)
T ss_pred             CCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            357899999999999999999999999 899999875

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=93.46  E-value=0.28  Score=44.45  Aligned_cols=37  Identities=16%  Similarity=0.275  Sum_probs=33.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+.+|+|+|+|-.|..+|..|+..|..+++|+|....
T Consensus        18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~v   54 (286)
T cd01491          18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPC   54 (286)
T ss_pred             hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Confidence            4679999999999999999999999888999997653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.43  E-value=0.13  Score=43.81  Aligned_cols=37  Identities=22%  Similarity=0.451  Sum_probs=33.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|+|||+|-.|..+|..|++.|..+++++|...
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            3578999999999999999999999987899999764

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.43  E-value=0.13  Score=46.66  Aligned_cols=34  Identities=15%  Similarity=0.411  Sum_probs=30.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|..|...|..|++.|+ +|+++++..
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~   37 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGV-PVRLWARRP   37 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            3589999999999999999999999 799999854

>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C

Probab=93.42  E-value=0.1  Score=42.09  Aligned_cols=56  Identities=21%  Similarity=0.417  Sum_probs=34.2

Q ss_pred             cccCcCCCCccccCCCCC----CChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhcccc
Q psy16201         40 SRCLKCADAPCQKSCPTQ----IDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLY  106 (240)
Q Consensus        40 ~rC~~c~~~~C~~aCP~~----~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~  106 (240)
                      .+|++|+  -|+.+||+.    ..+..+++.+..|...+.   +.+  .....| -.|-   .|+..|+.+
T Consensus         2 ~~Ci~CG--~C~~~CP~~~~~~~~~~~~~~~~~~g~~~~~---~~~--~~~~~C-~~Cg---~C~~~CP~~   61 (144)
T TIGR03290         2 KACYQCG--TCTGSCPSGRRTSYRTRLIIRKALLGLKDEV---ISD--DDLWMC-TTCY---TCQERCPRD   61 (144)
T ss_pred             ccccCCC--CCcCcCCCccccCCCHHHHHHHHHccchhhh---ccC--CCCCcC-cCcC---chhhhcCCC
Confidence            5899999  799999975    344455555555532211   111  122334 4565   599999974

The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.

>KOG2960|consensus

Probab=93.41  E-value=0.042  Score=48.19  Aligned_cols=37  Identities=22%  Similarity=0.425  Sum_probs=31.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+|.+||++||+.+++.  . +|.|+|..-.+|
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdl-kvaIIE~SVaPG  114 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDL-KVAIIESSVAPG  114 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCc-eEEEEEeeecCC
Confidence            458999999999999999998765  5 799999876543

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.38  E-value=0.12  Score=46.30  Aligned_cols=37  Identities=30%  Similarity=0.503  Sum_probs=33.2

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+.+|+|+|+|-.|..+|..|++.|..+++|+|...
T Consensus        28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            3577999999999999999999999976899999765

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.22  E-value=0.12  Score=50.31  Aligned_cols=35  Identities=20%  Similarity=0.366  Sum_probs=31.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -++|+|||+|..|...|..|++.|+ .|+++|+...
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~e   39 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRAE   39 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHH
Confidence            3579999999999999999999999 7999998753

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.20  E-value=0.4  Score=47.79  Aligned_cols=76  Identities=11%  Similarity=0.212  Sum_probs=52.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhh--cCCcEE
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEK--TAYQWV  222 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~--s~~d~V  222 (240)
                      ..+|+|+|.|..|...|..|.++|+ +++++|+++.-      -+..++.|....+|..    -..+.|.+.  ...++|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~------v~~~~~~g~~v~~GDa----t~~~~L~~agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDH------IETLRKFGMKVFYGDA----TRMDLLESAGAAKAEVL  468 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHH------HHHHHhcCCeEEEEeC----CCHHHHHhcCCCcCCEE
Confidence            5689999999999999999999999 79999987531      1223446777766653    234444331  135677


Q ss_pred             EEecccchh
Q psy16201        223 YYSNCKVLS  231 (240)
Q Consensus       223 ~~s~~~~~~  231 (240)
                      +.+..+...
T Consensus       469 vv~~~d~~~  477 (621)
T PRK03562        469 INAIDDPQT  477 (621)
T ss_pred             EEEeCCHHH
Confidence            777655433

>PLN02785 Protein HOTHEAD

Probab=93.18  E-value=0.12  Score=51.30  Aligned_cols=34  Identities=21%  Similarity=0.362  Sum_probs=30.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+++|||+|.+|+.+|..|++ ++ +|.|+|+...
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~-~~-~VLllE~G~~   88 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ-NF-SVLLLERGGV   88 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc-CC-cEEEEecCCC
Confidence            4789999999999999999998 68 7999998863

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=93.14  E-value=0.25  Score=51.87  Aligned_cols=37  Identities=19%  Similarity=0.382  Sum_probs=31.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~~  180 (240)
                      .+++|+|||+|..|+.+|..+.+. |.++|+++.+...
T Consensus       667 ~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~  704 (1019)
T PRK09853        667 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK  704 (1019)
T ss_pred             CCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCc
Confidence            468999999999999999998887 5337999988753

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=93.09  E-value=0.15  Score=44.16  Aligned_cols=36  Identities=14%  Similarity=0.445  Sum_probs=32.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+.+|+|||+|-.|...|..|++.|..+++++|...
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            467999999999999999999999988899998764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=93.09  E-value=0.16  Score=44.77  Aligned_cols=37  Identities=16%  Similarity=0.427  Sum_probs=33.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|+|||+|..|..+|..|++.|..+++++|...
T Consensus        30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            4578999999999999999999999987899999764

>KOG4716|consensus

Probab=93.09  E-value=0.12  Score=48.25  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=31.9

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK  177 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~  177 (240)
                      .+.+.+.+|||+|.+||+||..+++.|. +|.++|-
T Consensus        16 ~sydyDLIviGgGSgGLacaKeAa~~G~-kV~~lDf   50 (503)
T KOG4716|consen   16 SSYDYDLIVIGGGSGGLACAKEAADLGA-KVACLDF   50 (503)
T ss_pred             ccCCccEEEEcCCcchhhHHHHHHhcCC-cEEEEee
Confidence            3567899999999999999999999999 7999984

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=93.09  E-value=0.15  Score=44.78  Aligned_cols=38  Identities=16%  Similarity=0.452  Sum_probs=33.7

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -.+.+|+|+|+|-.|..+|..|++.|..+++++|....
T Consensus        22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v   59 (240)
T TIGR02355        22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV   59 (240)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence            34679999999999999999999999888999997653

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=93.08  E-value=0.11  Score=50.53  Aligned_cols=35  Identities=20%  Similarity=0.375  Sum_probs=31.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -++|+|||+|..|...|..|++.|+ .|+++|+...
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~e   41 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARAG   41 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHH
Confidence            4689999999999999999999999 7999998763

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=93.07  E-value=0.26  Score=51.78  Aligned_cols=37  Identities=19%  Similarity=0.382  Sum_probs=31.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~~  180 (240)
                      .+++|+|||+|..|+.+|..+.+. |.++|+++.+...
T Consensus       665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~  702 (1012)
T TIGR03315       665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK  702 (1012)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCc
Confidence            478999999999999999998886 8647999988763

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.04  E-value=0.084  Score=49.39  Aligned_cols=31  Identities=23%  Similarity=0.430  Sum_probs=26.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEE
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITI  174 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v  174 (240)
                      +...+|.|||+||+|-++|.|.+|+|. +.-+
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGi-RTGl  239 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGI-RTGL  239 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcc-hhhh
Confidence            445789999999999999999999998 4433

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=93.03  E-value=0.15  Score=45.83  Aligned_cols=32  Identities=34%  Similarity=0.620  Sum_probs=29.9

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||+|..|...|..|++.|+ +|+++++..
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            79999999999999999999999 799999864

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=93.03  E-value=0.16  Score=40.38  Aligned_cols=33  Identities=30%  Similarity=0.437  Sum_probs=30.3

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||+|-.|...+..|++.|+.+++++|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            589999999999999999999987799999764

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=92.96  E-value=0.18  Score=41.99  Aligned_cols=36  Identities=17%  Similarity=0.286  Sum_probs=32.2

Q ss_pred             CCCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|||+|- +|..+|.+|.++|. +|++..+..
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~   78 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT   78 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc
Confidence            4689999999996 69999999999999 799999874

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.94  E-value=0.16  Score=45.99  Aligned_cols=33  Identities=18%  Similarity=0.317  Sum_probs=30.2

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|+|+|..|...|.+|++.|+ +|+++.+..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEech
Confidence            479999999999999999999999 799999853

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=92.91  E-value=0.17  Score=48.87  Aligned_cols=37  Identities=22%  Similarity=0.344  Sum_probs=31.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+++|+|||+|..|+.+|..+.+.|...|+++|..+.
T Consensus       282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~  318 (485)
T TIGR01317       282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK  318 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence            5689999999999999998888888647999987653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=92.85  E-value=0.16  Score=48.19  Aligned_cols=36  Identities=17%  Similarity=0.225  Sum_probs=32.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|+|.|+.|..+|..|...|. +|+++|..+
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp  228 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP  228 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence            458899999999999999999999999 899998765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=92.73  E-value=0.26  Score=36.02  Aligned_cols=35  Identities=14%  Similarity=0.402  Sum_probs=30.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK  177 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~  177 (240)
                      ..+++++|+|.|-.|...+..|.+.|..+|.++++
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            34679999999999999999999984337999987

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=92.72  E-value=0.67  Score=43.60  Aligned_cols=35  Identities=23%  Similarity=0.577  Sum_probs=32.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..++|+|+|.|..|...+..|.+.|+ +|+++|+.+
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~  264 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDP  264 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            46789999999999999999999999 799999775

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=92.68  E-value=0.2  Score=43.20  Aligned_cols=37  Identities=19%  Similarity=0.387  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -...+|+|||+|-.|...|..|++.|..+++++|...
T Consensus        26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            3567999999999999999999999986799999764

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=92.68  E-value=0.24  Score=45.90  Aligned_cols=31  Identities=13%  Similarity=0.314  Sum_probs=28.6

Q ss_pred             eEEEECCChhHHHHHHHHHHcC--------CCcEEEEecC
Q psy16201        147 KIALIGCGPASLSCATFLSRMG--------YDDITIYEKN  178 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G--------~~~V~v~e~~  178 (240)
                      +|+|||+|..|-+.|..|+++|        + +|+++.+.
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~-~V~lw~~~   39 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEE-SVRMWVFE   39 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCc-eEEEEEec
Confidence            5899999999999999999999        8 79999874

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=92.64  E-value=0.2  Score=45.02  Aligned_cols=36  Identities=28%  Similarity=0.422  Sum_probs=32.5

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++|+|||+|-+|.++++.|++.|.++|+|+.|..
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~  159 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP  159 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            478999999999999999999999986799999864

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=92.64  E-value=0.54  Score=39.13  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=29.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++++|+|=|..|-.+|..|+.+|. +|+|+|..+
T Consensus        21 l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DP   56 (162)
T PF00670_consen   21 LAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDP   56 (162)
T ss_dssp             -TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSH
T ss_pred             eCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECCh
Confidence            458999999999999999999999999 899999887

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK08328 hypothetical protein; Provisional

Probab=92.50  E-value=0.2  Score=43.66  Aligned_cols=37  Identities=24%  Similarity=0.468  Sum_probs=33.1

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+.+|+|+|+|-.|..+|..|++.|..+++++|...
T Consensus        25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            3567999999999999999999999987899998665

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=92.48  E-value=0.14  Score=45.76  Aligned_cols=32  Identities=22%  Similarity=0.426  Sum_probs=29.7

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|.|||.|..|...|..|++.|+ +|++|++..
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            58999999999999999999999 899999875

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=92.46  E-value=0.59  Score=46.43  Aligned_cols=77  Identities=13%  Similarity=0.219  Sum_probs=51.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHh--hcCCcEE
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISE--KTAYQWV  222 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~--~s~~d~V  222 (240)
                      ..+|+|+|.|..|...+..|.+.|+ +++++|.++.-      -+..++.|....+|..    -+.+.|.+  -...++|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~------v~~~~~~g~~v~~GDa----t~~~~L~~agi~~A~~v  468 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISA------VNLMRKYGYKVYYGDA----TQLELLRAAGAEKAEAI  468 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHH------HHHHHhCCCeEEEeeC----CCHHHHHhcCCccCCEE
Confidence            4689999999999999999999999 79999977531      1233456777776652    22333332  1135677


Q ss_pred             EEecccchhh
Q psy16201        223 YYSNCKVLSN  232 (240)
Q Consensus       223 ~~s~~~~~~~  232 (240)
                      +.+..+...+
T Consensus       469 v~~~~d~~~n  478 (601)
T PRK03659        469 VITCNEPEDT  478 (601)
T ss_pred             EEEeCCHHHH
Confidence            7776555443

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.43  E-value=0.18  Score=45.67  Aligned_cols=32  Identities=25%  Similarity=0.454  Sum_probs=29.6

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||+|..|.+.|..|++.|+ +|+++.+..
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCH
Confidence            69999999999999999999999 799999854

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=92.36  E-value=0.36  Score=45.92  Aligned_cols=72  Identities=22%  Similarity=0.244  Sum_probs=48.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHh-hcCCcEE
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISE-KTAYQWV  222 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~-~s~~d~V  222 (240)
                      .+++|+|||+|=.|--+|.+|.++|+..|+|.-|...-     ..+..+..|.+         .+++++|.. ...+|.|
T Consensus       177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~er-----A~~La~~~~~~---------~~~l~el~~~l~~~DvV  242 (414)
T COG0373         177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLER-----AEELAKKLGAE---------AVALEELLEALAEADVV  242 (414)
T ss_pred             ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHH-----HHHHHHHhCCe---------eecHHHHHHhhhhCCEE
Confidence            58899999999999999999999997688888766422     12222333422         244444332 2248988


Q ss_pred             EEecccc
Q psy16201        223 YYSNCKV  229 (240)
Q Consensus       223 ~~s~~~~  229 (240)
                      |.|+...
T Consensus       243 issTsa~  249 (414)
T COG0373         243 ISSTSAP  249 (414)
T ss_pred             EEecCCC
Confidence            8886554

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=92.36  E-value=0.4  Score=43.90  Aligned_cols=70  Identities=11%  Similarity=0.077  Sum_probs=44.8

Q ss_pred             eEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201        147 KIALIGC-GPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY  223 (240)
Q Consensus       147 ~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~  223 (240)
                      +|+|.|+ |..|--++..|.+.|+ +|+|+|-...+-.+.     +...-.+|..+. +...--++.+.+....|+|+
T Consensus         2 ~iLVtGGAGYIGSHtv~~Ll~~G~-~vvV~DNL~~g~~~~-----v~~~~~~f~~gD-i~D~~~L~~vf~~~~idaVi   72 (329)
T COG1087           2 KVLVTGGAGYIGSHTVRQLLKTGH-EVVVLDNLSNGHKIA-----LLKLQFKFYEGD-LLDRALLTAVFEENKIDAVV   72 (329)
T ss_pred             eEEEecCcchhHHHHHHHHHHCCC-eEEEEecCCCCCHHH-----hhhccCceEEec-cccHHHHHHHHHhcCCCEEE
Confidence            6788877 9999999999999999 899999776553222     221114555544 22222344444444567665

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=92.34  E-value=0.2  Score=47.78  Aligned_cols=36  Identities=19%  Similarity=0.400  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|+|.|..|..+|..|...|. +|+++|..+
T Consensus       210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp  245 (425)
T PRK05476        210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP  245 (425)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence            358899999999999999999999999 899999765

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=92.32  E-value=0.21  Score=45.38  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=31.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++|+|||+|..|..++..|..+|..+|+++++..
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~  212 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY  212 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            578999999999999999999887744799999764

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=92.28  E-value=0.23  Score=41.39  Aligned_cols=33  Identities=21%  Similarity=0.452  Sum_probs=30.1

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||+|-.|...|..|++.|+.+++++|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999999986699999765

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=92.26  E-value=0.2  Score=42.62  Aligned_cols=37  Identities=27%  Similarity=0.296  Sum_probs=33.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+.+|+|+|+|..|...+..|++.|..+++++|....
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v   56 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV   56 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence            4779999999999999999999999878999997653

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.25  E-value=0.19  Score=47.38  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=31.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .++|+|||.|.+|+++|..|.++|+ .|+++|....
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~-~V~g~D~~~~   37 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGV-YVIGVDKSLE   37 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCC-EEEEEeCCcc
Confidence            3589999999999999999999999 7999997643

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=92.22  E-value=0.2  Score=48.19  Aligned_cols=36  Identities=11%  Similarity=0.278  Sum_probs=32.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|||+|.+|+..|..|++.+. +|+++.+..
T Consensus       202 ~~gk~VvVVG~G~Sg~diA~~L~~~a~-~V~l~~r~~  237 (461)
T PLN02172        202 FKNEVVVVIGNFASGADISRDIAKVAK-EVHIASRAS  237 (461)
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHHhCC-eEEEEEeec
Confidence            468999999999999999999999988 799998754

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=92.21  E-value=0.2  Score=44.68  Aligned_cols=32  Identities=22%  Similarity=0.242  Sum_probs=29.6

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|.|||.|..|.+.|..|.++|+ +|+++++..
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            69999999999999999999999 799999764

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=92.19  E-value=0.2  Score=47.92  Aligned_cols=38  Identities=21%  Similarity=0.468  Sum_probs=34.3

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .-.+|+|+|||+|-+|...+..|++.|. +|+++=|.+.
T Consensus       172 ~~~GKrV~VIG~GaSA~di~~~l~~~ga-~vt~~qRs~~  209 (443)
T COG2072         172 DLRGKRVLVIGAGASAVDIAPELAEVGA-SVTLSQRSPP  209 (443)
T ss_pred             ccCCCeEEEECCCccHHHHHHHHHhcCC-eeEEEecCCC
Confidence            3578999999999999999999999997 8999988763

>KOG2404|consensus

Probab=92.16  E-value=0.18  Score=46.78  Aligned_cols=33  Identities=27%  Similarity=0.319  Sum_probs=30.5

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .|+|||+|.+||+++-.+..+|- .|+++|++..
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg-~V~llek~~s   43 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGG-IVILLEKAGS   43 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCC-eEEEEeccCC
Confidence            69999999999999999999988 7999999874

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.15  E-value=0.18  Score=51.03  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=31.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -++|+|||+|..|...|..+++.|+ +|+++|....
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~  347 (715)
T PRK11730        313 VKQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQK  347 (715)
T ss_pred             cceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHH
Confidence            3689999999999999999999999 8999998763

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=92.14  E-value=0.25  Score=44.58  Aligned_cols=36  Identities=17%  Similarity=0.247  Sum_probs=32.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++|+|+|+|-++.++++.|++.|.++++|++|..
T Consensus       126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~  161 (283)
T PRK14027        126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            478999999999999999999999986799999864

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=92.12  E-value=0.31  Score=40.52  Aligned_cols=38  Identities=18%  Similarity=0.397  Sum_probs=33.5

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .-.+++|.|||.|-.|...|..|...|. +|..|++...
T Consensus        33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~   70 (178)
T PF02826_consen   33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPK   70 (178)
T ss_dssp             -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCH
T ss_pred             ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCC
Confidence            3568999999999999999999999999 8999998875

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=92.05  E-value=0.26  Score=46.80  Aligned_cols=37  Identities=24%  Similarity=0.397  Sum_probs=32.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|+|+|..|..++..|...|+.+|+++++..
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~  216 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL  216 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence            4578999999999999999999999975799998864

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=91.98  E-value=0.24  Score=44.93  Aligned_cols=33  Identities=27%  Similarity=0.406  Sum_probs=29.5

Q ss_pred             eEEEECCChhHHHHHHHHHHcCC-CcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGY-DDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~-~~V~v~e~~~  179 (240)
                      +|+|||+|..|.++|+.|+++|. ..|.++|+..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            79999999999999999999993 2799999865

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=91.96  E-value=0.21  Score=46.14  Aligned_cols=33  Identities=15%  Similarity=0.463  Sum_probs=29.1

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|+|+||.||.++..+...|.+.|++.|..+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~  203 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP  203 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence            899999999999998888888976788888765

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=91.96  E-value=0.22  Score=46.87  Aligned_cols=31  Identities=19%  Similarity=0.333  Sum_probs=27.7

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||.|..|+..|..++. || +|+++|...
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~-~VigvD~d~   32 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NH-EVVALDILP   32 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CC-cEEEEECCH
Confidence            69999999999999987774 99 799999876

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=91.94  E-value=0.26  Score=41.96  Aligned_cols=36  Identities=31%  Similarity=0.422  Sum_probs=32.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+.+|+|||+|-.|..+|..|++.|..+++++|...
T Consensus        18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485          18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            467999999999999999999999987899999765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=91.91  E-value=0.21  Score=44.96  Aligned_cols=32  Identities=28%  Similarity=0.482  Sum_probs=30.0

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|.|||.|..|...|..|+++|+ +|++|++..
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            79999999999999999999999 799999865

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=91.91  E-value=0.22  Score=45.11  Aligned_cols=34  Identities=32%  Similarity=0.492  Sum_probs=31.4

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|++||-|..|...|..|.+.|| .|++|++.+.
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~   34 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPE   34 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChh
Confidence            379999999999999999999999 7999999863

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=91.89  E-value=0.26  Score=45.52  Aligned_cols=37  Identities=24%  Similarity=0.502  Sum_probs=33.2

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -...+|+|||+|-.|..+|.+|++.|..+++++|...
T Consensus        22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            3467999999999999999999999987899999864

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=91.85  E-value=0.26  Score=48.17  Aligned_cols=36  Identities=22%  Similarity=0.419  Sum_probs=32.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+.+|+|+|+|+.|+.++..+...|. .|+++|.+..
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~  198 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPE  198 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence            46799999999999999999999999 7999997653

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=91.82  E-value=0.3  Score=40.87  Aligned_cols=35  Identities=20%  Similarity=0.434  Sum_probs=31.0

Q ss_pred             CCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++++|+|+ |..|...+..|++.|+ +|+++.|+.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~   62 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDL   62 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            4689999997 9999999999999999 899998763

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=91.79  E-value=0.4  Score=44.82  Aligned_cols=36  Identities=22%  Similarity=0.368  Sum_probs=32.3

Q ss_pred             CCCCeEEEEC-CChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIG-CGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG-~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +..++|+||| .|..|-+.|..|.+.|+ .|+++++.+
T Consensus        96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~~  132 (374)
T PRK11199         96 PDLRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQDD  132 (374)
T ss_pred             cccceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCCc
Confidence            4568999999 89999999999999999 799999764

>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein

Probab=91.78  E-value=0.14  Score=44.39  Aligned_cols=25  Identities=36%  Similarity=0.707  Sum_probs=20.2

Q ss_pred             hhhHhhhcccCcCCCCccccCCCCCCC
Q psy16201         33 RGALKEASRCLKCADAPCQKSCPTQID   59 (240)
Q Consensus        33 ~~~~~ea~rC~~c~~~~C~~aCP~~~d   59 (240)
                      .....+...|+.|+  -|+.+||+...
T Consensus       131 ~~~~~~~~~Ci~CG--~C~~~CP~~~~  155 (220)
T TIGR00384       131 REKLDQLSGCILCG--CCYSSCPAFWW  155 (220)
T ss_pred             HHHHhhhhhccccc--cccccCCCCcc
Confidence            34556889999999  79999998743

Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=91.73  E-value=0.096  Score=52.93  Aligned_cols=58  Identities=19%  Similarity=0.482  Sum_probs=41.5

Q ss_pred             hhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhcccc
Q psy16201         37 KEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLY  106 (240)
Q Consensus        37 ~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~  106 (240)
                      .+...|+.|+  -|+.+||.++.+..+.+.+..+++..+..+    +.  .-| --|.   .|...|+-+
T Consensus       367 ~~e~~CI~CG--~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~----~~--~~C-ieCG---~C~~vCPs~  424 (695)
T PRK05035        367 PPEQPCIRCG--ACADACPASLLPQQLYWFAKAEEHDKAQEY----NL--FDC-IECG---ACAYVCPSN  424 (695)
T ss_pred             CchhhcCCcc--cHHHHCCccchhhhHHHhhhccccchhhhc----Ch--hhc-cccC---cccccCCCC
Confidence            4678899999  699999999988888777888888764322    11  123 2255   588888853

>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed

Probab=91.66  E-value=0.54  Score=41.67  Aligned_cols=85  Identities=20%  Similarity=0.341  Sum_probs=46.5

Q ss_pred             hhhHhhhcccCcCCCCccccCCCCCCChHHHH-----HHHhc------CC--HHHHHHHHHhhCCCCccccccCCCCCch
Q psy16201         33 RGALKEASRCLKCADAPCQKSCPTQIDIKSFI-----TSISH------KN--YYGAAKAIFSDNPLGLTCGMVCPTSDLC   99 (240)
Q Consensus        33 ~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i-----~~i~~------g~--~~~A~~~i~~~np~p~~cgrvC~~~~~C   99 (240)
                      .....+...|+.|+  -|..+||+....++|+     ..+..      ++  .++-++.+...+- -..| ..|-   .|
T Consensus       145 ~~~~~~~~~CI~CG--~C~saCP~~~~~~~f~GP~~l~ka~r~~~d~~rd~~~~~rl~~l~~~~g-~~~C-~~Cg---~C  217 (249)
T PRK08640        145 RQWAYELSKCMTCG--CCLEACPNVNEKSDFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDGG-IADC-GNAQ---NC  217 (249)
T ss_pred             HHHHhhhhhccCcC--cccccCCCCccCCCccChHHHHHHHHHhcCcCcCccHHHHHHHhhcCCC-eeCC-cCcC---cc
Confidence            34556788899999  7999999776533333     22221      32  2222222222111 1222 3444   59


Q ss_pred             hhhccccccCCCcc-ccchhhHHHHHHHH
Q psy16201        100 MGGCNLYAAEEGPI-NIGGLQQFATEVFK  127 (240)
Q Consensus       100 e~~C~r~~~~~~pV-~I~~l~r~~~~~~~  127 (240)
                      ...|+.+..   +. .|..+++.+...+.
T Consensus       218 ~~vCPkgI~---~~~~I~~lr~~~~~~g~  243 (249)
T PRK08640        218 VRVCPKGIP---LTTSIAAMNRETTKQSF  243 (249)
T ss_pred             cccCCCCCC---HHHHHHHHHHHHHHHHH
Confidence            999997531   22 47777777665443

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=91.64  E-value=0.32  Score=44.22  Aligned_cols=34  Identities=24%  Similarity=0.329  Sum_probs=29.8

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||+|..|...|+.|+.+|+.+|+++|...
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~   35 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE   35 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            4899999999999999999998863599999854

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.62  E-value=0.93  Score=42.43  Aligned_cols=37  Identities=11%  Similarity=0.213  Sum_probs=31.6

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcC-------CCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMG-------YDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G-------~~~V~v~e~~~~  180 (240)
                      ....+|+|||+|.-|-+.|..|+++|       + +|+++.++..
T Consensus         9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~-~V~lw~~~~~   52 (365)
T PTZ00345          9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHN-EVRMWVLEEI   52 (365)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCC-eEEEEEeccc
Confidence            34568999999999999999999997       7 7999977653

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=91.57  E-value=0.37  Score=38.33  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=30.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcC-CCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMG-YDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~  179 (240)
                      ++++|+|+|+|..|.+.+..|.+.| + .|+++++..
T Consensus        18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~-~v~v~~r~~   53 (155)
T cd01065          18 KGKKVLILGAGGAARAVAYALAELGAA-KIVIVNRTL   53 (155)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCC-EEEEEcCCH
Confidence            4679999999999999999999986 6 799999764

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=91.56  E-value=0.32  Score=43.37  Aligned_cols=37  Identities=24%  Similarity=0.425  Sum_probs=32.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|+|+|-+|.+.++.|+..|..+|+|+.|..
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~  157 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV  157 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            3568999999999999999999999944899999864

>PF13746 Fer4_18: 4Fe-4S dicluster domain

Probab=91.52  E-value=0.072  Score=37.90  Aligned_cols=24  Identities=33%  Similarity=0.890  Sum_probs=20.5

Q ss_pred             HhhhcccCcCCCCccccCCCCCCChH
Q psy16201         36 LKEASRCLKCADAPCQKSCPTQIDIK   61 (240)
Q Consensus        36 ~~ea~rC~~c~~~~C~~aCP~~~di~   61 (240)
                      ......|++|+  -|+.+||++|||.
T Consensus        46 ~~~~~~CVgCg--rCv~~CP~~Idir   69 (69)
T PF13746_consen   46 RYGEGDCVGCG--RCVRVCPAGIDIR   69 (69)
T ss_pred             hcCCccCCCcC--hHhhhcCCCCCcC
Confidence            34677899999  7999999999984

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=91.48  E-value=0.25  Score=44.09  Aligned_cols=33  Identities=27%  Similarity=0.589  Sum_probs=30.2

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|.|||.|..|...|..|++.|+ +|++|+++.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~   35 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNP   35 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            479999999999999999999999 799999765

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=91.47  E-value=0.3  Score=46.29  Aligned_cols=37  Identities=30%  Similarity=0.354  Sum_probs=32.1

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|+|+|..|..++..|...|..+|+++++..
T Consensus       178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~  214 (417)
T TIGR01035       178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY  214 (417)
T ss_pred             ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4568999999999999999999999943799998764

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=91.41  E-value=0.31  Score=44.14  Aligned_cols=34  Identities=26%  Similarity=0.422  Sum_probs=30.1

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      ++|+|||+|-.|.+.|+.|+.+|.. ++.++|+..
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~   35 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE   35 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            3799999999999999999999942 799999865

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=91.40  E-value=0.32  Score=43.10  Aligned_cols=36  Identities=22%  Similarity=0.408  Sum_probs=32.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|+|+|-+|.+.+..|++.|+ +|+++++..
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~  150 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTV  150 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            346799999999999999999999999 899998764

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=91.39  E-value=0.3  Score=49.60  Aligned_cols=37  Identities=19%  Similarity=0.115  Sum_probs=32.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..-++|+|||+|..|..-|..+++.|+ +|+++|....
T Consensus       311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~  347 (714)
T TIGR02437       311 KDVKQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQH  347 (714)
T ss_pred             cccceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHH
Confidence            345689999999999999999999999 7999998763

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PLN02494 adenosylhomocysteinase

Probab=91.33  E-value=0.32  Score=47.03  Aligned_cols=36  Identities=17%  Similarity=0.344  Sum_probs=32.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|+|.|..|..+|..|...|. +|+++|..+
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp  287 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP  287 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            358999999999999999999999999 899998765

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=91.29  E-value=0.33  Score=44.65  Aligned_cols=36  Identities=25%  Similarity=0.449  Sum_probs=32.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|.|||.|..|...|..|...|+ +|.+|++..
T Consensus       144 l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~  179 (330)
T PRK12480        144 VKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYP  179 (330)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCh
Confidence            467899999999999999999999999 899999764

>KOG2495|consensus

Probab=91.20  E-value=0.17  Score=48.22  Aligned_cols=84  Identities=10%  Similarity=0.112  Sum_probs=0.0

Q ss_pred             hhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHH--------------cCCCcEEEEecCCCcc
Q psy16201        117 GLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSR--------------MGYDDITIYEKNTYDM  182 (240)
Q Consensus       117 ~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~--------------~G~~~V~v~e~~~~~~  182 (240)
                      +|.+-+.+.......+....|+.   .+-.+++||||||.|+..|..|+.              .-. +||++|+.+.-.
T Consensus       193 eIR~~~~~~le~a~~~~l~~eer---kRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i-~vtLiEA~d~iL  268 (491)
T KOG2495|consen  193 EIRRKVIDNLEKAELPGLSDEER---KRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDI-KVTLIEAADHIL  268 (491)
T ss_pred             HHHHHHHHHHHHhhcCCCChHHh---hheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhhe-EEEeeccchhHH


Q ss_pred             ------ccccchHHHhccCceEEeCCcc
Q psy16201        183 ------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       183 ------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                            +..+....+...++.+.+++-|
T Consensus       269 ~mFdkrl~~yae~~f~~~~I~~~~~t~V  296 (491)
T KOG2495|consen  269 NMFDKRLVEYAENQFVRDGIDLDTGTMV  296 (491)
T ss_pred             HHHHHHHHHHHHHHhhhccceeecccEE

>KOG0024|consensus

Probab=91.19  E-value=0.35  Score=44.64  Aligned_cols=37  Identities=24%  Similarity=0.410  Sum_probs=32.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+.+|+|.|+||.||.+...+...|.++|.+.|-.+
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~  204 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA  204 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH
Confidence            4578999999999999999999999988899988543

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=91.18  E-value=0.33  Score=49.15  Aligned_cols=57  Identities=21%  Similarity=0.244  Sum_probs=46.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGP  202 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~  202 (240)
                      .++-+|||+|.-||.+|.-|.+.|. +++|++-.+...       ..+.+.+.++++|++|+++.
T Consensus       145 ~~~avVIGGGLLGlEaA~~L~~~Gm-~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~  208 (793)
T COG1251         145 KKKAVVIGGGLLGLEAARGLKDLGM-EVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEK  208 (793)
T ss_pred             cCCcEEEccchhhhHHHHHHHhCCC-ceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeeccc
Confidence            4457899999999999999999999 799998776532       33455667789999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
1h7x_A	1025	Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ter		1e-72
1h7x_A	1025	Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ter		2e-12
1h7w_A	1025	Dihydropyrimidine Dehydrogenase (Dpd) From Pig Leng		1e-72
1h7w_A	1025	Dihydropyrimidine Dehydrogenase (Dpd) From Pig Leng		2e-12
2vdc_G	456	The 9.5 A Resolution Structure Of Glutamate Synthas		2e-08

>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary Complex Of A Mutant Enzyme (C671a), Nadph And 5- Fluorouracil Length = 1025

Iteration: 1
 Score =  269 bits (687), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/175 (74%), Positives = 145/175 (82%), Gaps = 5/175 (2%)
Query: 11  NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
           N F    L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSIS+K
Sbjct: 48  NCFHCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNK 107
Query: 71  NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
           NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNLYA EEG INIGGLQQFA+EVFK M 
Sbjct: 108 NYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMN 167
Query: 131 ISQIRPP--DAKVDFPD---TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           I QIR P   ++   P+    KIAL+G GPAS+SCA+FL+R+GY DITI+EK  Y
Sbjct: 168 IPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 222

>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary Complex Of A Mutant Enzyme (C671a), Nadph And 5- Fluorouracil Length = 1025

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 42/57 (73%), Gaps = 5/57 (8%)
Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEF 237
           D+VTNVSPRIV+GTTS  +YGP Q SFLNIELISEKTA  W     C+ ++  + +F
Sbjct: 581 DIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYW-----CQSVTELKADF 632

>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig Length = 1025

Iteration: 1
 Score =  269 bits (687), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/175 (74%), Positives = 145/175 (82%), Gaps = 5/175 (2%)
Query: 11  NVFTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHK 70
           N F    L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSIS+K
Sbjct: 48  NCFHCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNK 107
Query: 71  NYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMG 130
           NYYGAAK IFSDNPLGLTCGMVCPTSDLC+GGCNLYA EEG INIGGLQQFA+EVFK M 
Sbjct: 108 NYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMN 167
Query: 131 ISQIRPP--DAKVDFPD---TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           I QIR P   ++   P+    KIAL+G GPAS+SCA+FL+R+GY DITI+EK  Y
Sbjct: 168 IPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 222

>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig Length = 1025

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 42/57 (73%), Gaps = 5/57 (8%)
Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEF 237
           D+VTNVSPRIV+GTTS  +YGP Q SFLNIELISEKTA  W     C+ ++  + +F
Sbjct: 581 DIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYW-----CQSVTELKADF 632

>pdb|2VDC|G Chain G, The 9.5 A Resolution Structure Of Glutamate Synthase From Cryo-Electron Microscopy And Its Oligomerization Behavior In Solution: Functional Implications. Length = 456

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 7/162 (4%)
Query: 20  NNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAI 79
            +F +I +   S+  A ++A+RC +C    CQ  CP   +I  ++   S      A +  
Sbjct: 1   QDFAEI-YARFSDERANEQANRCSQCGVPFCQVHCPVSNNIPDWLKLTSEGRLEEAYEVS 59
Query: 80  FSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDA 139
            + N     CG +CP   LC G C +  +  G + IG ++++  +   D G  + R P  
Sbjct: 60  QATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSR 119
Query: 140 KVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181
           ++      + +IG GPA L+ A  L   GY ++ +Y++  YD
Sbjct: 120 ELGL---SVGVIGAGPAGLAAAEELRAKGY-EVHVYDR--YD 155

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	2e-80
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	4e-14
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	2e-26
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	4e-07
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	2e-05
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	3e-05
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	7e-05
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	9e-05
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	2e-04
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	2e-04
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	2e-04
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	3e-04
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	4e-04
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	5e-04
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	6e-04

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score =  258 bits (662), Expect = 2e-80
 Identities = 127/166 (76%), Positives = 138/166 (83%), Gaps = 5/166 (3%)

Query: 18  LVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAK 77
           L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSIS+KNYYGAAK
Sbjct: 55  LENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAK 114

Query: 78  AIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPP 137
            IFSDNPLGLTCGMVCPTSDLC+GGCNLYA EEG INIGGLQQFA+EVFK M I QIR P
Sbjct: 115 MIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNP 174

Query: 138 DAKVDFP-----DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
                         KIAL+G GPAS+SCA+FL+R+GY DITI+EK 
Sbjct: 175 CLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQ 220

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 70.2 bits (172), Expect = 4e-14
 Identities = 34/60 (56%), Positives = 43/60 (71%), Gaps = 5/60 (8%)

Query: 181 DMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSNTRTEFLNK 240
           D+VTNVSPRIV+GTTS  +YGP Q SFLNIELISEKTA  W     C+ ++  + +F + 
Sbjct: 581 DIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYW-----CQSVTELKADFPDN 635

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score =  105 bits (264), Expect = 2e-26
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 5/158 (3%)

Query: 21  NFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIF 80
           +F +I +   S+  A ++A+RC +C    CQ  CP   +I  ++   S      A +   
Sbjct: 2   DFAEI-YARFSDERANEQANRCSQCGVPFCQVHCPVSNNIPDWLKLTSEGRLEEAYEVSQ 60

Query: 81  SDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAK 140
           + N     CG +CP   LC G C +  +  G + IG ++++  +   D G  + R P  +
Sbjct: 61  ATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSRE 120

Query: 141 VDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
           +      + +IG GPA L+ A  L   GY ++ +Y++ 
Sbjct: 121 L---GLSVGVIGAGPAGLAAAEELRAKGY-EVHVYDRY 154

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 49.1 bits (117), Expect = 4e-07
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
            D++IA+IG GPA L+   +L + G+ D TI E+ 
Sbjct: 5   KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERT 39

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
           KI +IG GP  L  A  L+ +GY +  +YE N
Sbjct: 11  KIVIIGAGPTGLGAAVRLTELGYKNWHLYECN 42

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 43.2 bits (101), Expect = 3e-05
 Identities = 22/129 (17%), Positives = 36/129 (27%), Gaps = 18/129 (13%)

Query: 53  SCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGP 112
           S      + + +           A        L      + PT              E  
Sbjct: 4   SVLEPQSVPTLVNVGLKAVGRNDAPVERDARGLSKPLLELMPTLGT--DAFTFSPIREST 61

Query: 113 INIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYD-D 171
           ++    +++    F D+               +T I ++G G   LS A  LS +  D  
Sbjct: 62  VSRAMTRRY----FADL-----------DAHAETDIVIVGAGSCGLSAAYVLSTLRPDLR 106

Query: 172 ITIYEKNTY 180
           ITI E    
Sbjct: 107 ITIVEAGVA 115

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
           +  ++G G   L    FL+R G+ +I + EK+
Sbjct: 2   RAVVVGAGLGGLLAGAFLARNGH-EIIVLEKS 32

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 122 ATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK 177
           ++          +          D  +A+IG GP  L+ A  L + G  D+++YE+
Sbjct: 3   SSHHHHHHSSGLVPRGSHMNLLSDKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYER 57

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           K  +IG G   L  A  LS+ G+ ++ ++E+   
Sbjct: 2   KTVVIGAGLGGLLSAARLSKAGH-EVEVFERLPI 34

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 4/62 (6%)

Query: 122 ATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD 181
            +        S + P  +       +I ++G G A L    FL +    D+T+Y     D
Sbjct: 2   GSSHHHHHHSSGLVPRGSH---MKKRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRKPD 57

Query: 182 MV 183
             
Sbjct: 58  EY 59

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 46/292 (15%), Positives = 92/292 (31%), Gaps = 93/292 (31%)

Query: 10  INVFTSCSLVNNFDDIKHTTLSERGALKEA------------SRCLKCADAPCQKSCPTQ 57
           ++VF   + V+NFD  K      +  L +             S  L+       K    +
Sbjct: 22  LSVFED-AFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK--QEE 77

Query: 58  IDIKSFITSISHKNYYGAAKAIFSDN--PLGLTCGMVCPTSDLCMGGCNLYAAEEGPINI 115
           + ++ F+  +   NY      I ++   P  +T                +Y  +   +  
Sbjct: 78  M-VQKFVEEVLRINYKFLMSPIKTEQRQPSMMT---------------RMYIEQRDRLYN 121

Query: 116 GGLQQFATEVFKDMGISQIRPPDA------KVDFPDTKIAL---IGCGPASL---SCATF 163
                   +VF    +S+++P         ++  P   + +   +G G   +    C ++
Sbjct: 122 DN------QVFAKYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 164 LSRMGYDD----ITIYEKNTYD----MVTNVSPRIVKGTTSR--HLYGPEQGSFLNIELI 213
             +   D     + +   N+ +    M+  +  +I    TSR  H    +    L I  I
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK----LRIHSI 230

Query: 214 SEKTAYQW--------------VYYSN--------CKVLSNTR----TEFLN 239
             +                   V  +         CK+L  TR    T+FL+
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKN 178
           KI +IG GPA L  A+ L +      I I EKN
Sbjct: 2   KILVIGAGPAGLVFASQLKQARPLWAIDIVEKN 34

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
             + +IG GP  L  A  L+++      I + N
Sbjct: 11  VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSN 43

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
           P  +I ++G G A L     L+R G+ D+TI E N 
Sbjct: 43  PPKRILIVGAGIAGLVAGDLLTRAGH-DVTILEANA 77

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 15/87 (17%)

Query: 94  PTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGC 153
            ++   +        +E  ++    ++       DM           + + +T + ++G 
Sbjct: 3   GSAGYDLNAFTFDPIKESIVS----REMTRRYMTDM-----------ITYAETDVVVVGA 47

Query: 154 GPASLSCATFLSRMGYDDITIYEKNTY 180
           G A LS A  +S+     + I E++  
Sbjct: 48  GSAGLSAAYEISKNPNVQVAIIEQSVS 74

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEK 177
            I + G G   LSCA  L + G   +T+ E 
Sbjct: 6   DILIAGAGIGGLSCALALHQAGIGKVTLLES 36

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	100.0
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	100.0
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.52
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.24
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.03
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.0
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.94
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.93
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.8
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.74
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.74
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.57
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.56
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.55
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.42
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.37
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.36
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.28
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.25
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.25
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.22
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.15
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.12
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.11
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.1
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.09
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.08
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.07
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.07
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.07
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.04
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.02
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.01
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.99
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.98
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.98
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.98
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	97.97
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	97.96
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.96
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.96
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.95
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.95
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.95
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.95
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.94
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	97.93
3dme_A	369	Conserved exported protein; structural genomics, P	97.93
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.92
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.92
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	97.9
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.89
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.89
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.89
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.88
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.88
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.87
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.86
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	97.86
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.85
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.85
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.85
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	97.85
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.84
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.84
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.84
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.83
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	97.83
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.83
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	97.83
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.81
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	97.81
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	97.8
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.8
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.79
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.79
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.79
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	97.78
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.78
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	97.77
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.77
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.77
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.76
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.76
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	97.76
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.75
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.75
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.75
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.75
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.75
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.75
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.75
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.74
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.74
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.73
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	97.72
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.72
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.72
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.71
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.71
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.71
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.7
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.7
4dna_A	463	Probable glutathione reductase; structural genomic	97.7
2cul_A	232	Glucose-inhibited division protein A-related PROT	97.7
3atr_A	453	Conserved archaeal protein; saturating double bond	97.69
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.69
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.69
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.68
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.67
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.67
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	97.66
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.66
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	97.65
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	97.64
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.64
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.64
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.63
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.62
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.62
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	97.62
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.61
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.61
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.6
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.59
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.59
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.58
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.57
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.57
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.57
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	97.57
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.57
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.57
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.56
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.56
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.56
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.53
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.53
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.53
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.52
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.52
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.52
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.52
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.51
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.51
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.51
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.51
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.5
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.49
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.48
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.47
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.47
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.46
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.45
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.45
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.45
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	97.45
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.44
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.44
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.44
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.44
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.44
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.44
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.43
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.41
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.4
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.39
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.39
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.36
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.35
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.35
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.34
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.34
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.33
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.33
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.31
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.3
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.3
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.3
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.29
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.29
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.28
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.27
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.27
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.27
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.26
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.25
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.21
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.2
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.2
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.2
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.19
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.18
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.18
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.15
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.15
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.15
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.15
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.15
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.15
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.14
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.14
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.14
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.12
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.12
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.1
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.1
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.09
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.08
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.08
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.07
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.07
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.07
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.06
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.05
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.05
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.05
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.04
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.02
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	96.99
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	96.97
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	96.96
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	96.96
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	96.96
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	96.95
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.94
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	96.93
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	96.93
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.93
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	96.92
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.91
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.91
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.9
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	96.87
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	96.86
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	96.85
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	96.84
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	96.83
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	96.82
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	96.82
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.81
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	96.77
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.77
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	96.77
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	96.77
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	96.77
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	96.76
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	96.76
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	96.75
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	96.75
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.73
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	96.72
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.72
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	96.71
1fec_A	490	Trypanothione reductase; redox-active center, oxid	96.7
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	96.68
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	96.65
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.62
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	96.6
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	96.59
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.55
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	96.54
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	96.54
3r9u_A	315	Thioredoxin reductase; structural genomics, center	96.53
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	96.47
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.46
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.46
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	96.45
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.45
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.42
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.4
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	96.4
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.39
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	96.38
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.35
4dna_A	463	Probable glutathione reductase; structural genomic	96.35
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.34
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.32
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	96.31
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.25
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	96.17
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.09
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	96.03
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.02
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	96.01
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.96
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.92
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.88
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	95.85
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.83
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	95.81
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.78
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	95.78
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	95.76
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	95.68
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.66
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	95.61
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	95.6
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	95.49
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.43
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	95.4
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	95.4
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	95.39
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.39
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	95.36
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.36
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	95.35
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	95.33
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	95.3
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.26
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	95.25
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	95.21
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.16
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	95.12
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.09
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.08
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.99
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	94.87
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	94.82
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.69
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	94.68
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	94.67
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.65
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.65
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	94.63
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.56
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.53
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.53
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	94.52
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.42
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.34
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	94.33
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.32
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.32
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.2
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.18
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.17
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	94.17
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.15
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.12
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	94.04
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	94.02
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	94.02
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	93.97
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	93.97
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	93.93
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	93.9
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.85
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.76
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	93.76
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	93.74
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	93.74
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	93.74
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	93.72
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	93.66
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	93.66
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	93.61
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	93.61
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	93.6
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	93.59
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	93.53
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.51
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	93.4
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	93.36
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.33
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	93.3
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	93.27
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	93.25
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	93.23
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	93.22
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	93.22
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	93.19
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	93.16
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	93.15
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	93.13
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	93.12
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	93.11
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	93.06
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	93.05
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	93.04
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	93.01
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	92.97
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	92.94
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	92.89
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	92.8
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	92.79
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	92.78
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	92.77
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	92.76
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	92.75
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	92.75
4ezb_A	317	Uncharacterized conserved protein; structural geno	92.71
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	92.69
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	92.66
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	92.61
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	92.58
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	92.58
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	92.55
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	92.55
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	92.52
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	92.46
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	92.44
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	92.42
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	92.38
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	92.34
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	92.33
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	92.33
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	92.32
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	92.32
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	92.31
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	92.26
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	92.24
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	92.22
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	92.18
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	92.12
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	92.09
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	92.06
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	92.04
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	92.02
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	92.02
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	92.02
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	92.0
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	92.0
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	91.99
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	91.98
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	91.96
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	91.94
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	91.93
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	91.92
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	91.9
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	91.89
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	91.88
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	91.84
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	91.84
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.82
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	91.82
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	91.8
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	91.8
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	91.79
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	91.78
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	91.72
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	91.72
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	91.7
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	91.69
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	91.69
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	91.69
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	91.66
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	91.62
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	91.58
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	91.57
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	91.53
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	91.51
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	91.5
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	91.45
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	91.42
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	91.4
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	91.33
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	91.31
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	91.3
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	91.28
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	91.28
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	91.25
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	91.21
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	91.19
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	91.13
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	91.09
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	91.04
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	91.03
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	91.0
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	90.97
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	90.94
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	90.93
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	90.93
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	90.91
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	90.91
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	90.9
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	90.88
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	90.87
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	90.74
3tl2_A	315	Malate dehydrogenase; center for structural genomi	90.72
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	90.64
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	90.63
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	90.62
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	90.59
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	90.53
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	90.53
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	90.52
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	90.5
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	90.48
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	90.43
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	90.42
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	90.34
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	90.33
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	90.33
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	90.26
1j6u_A	469	UDP-N-acetylmuramate-alanine ligase MURC; structur	90.25
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	90.24
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	90.23
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	90.2

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=100.00  E-value=3.8e-43  Score=331.00  Aligned_cols=203  Identities=22%  Similarity=0.390  Sum_probs=175.5

Q ss_pred             cCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCch
Q psy16201         20 NNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLC   99 (240)
Q Consensus        20 ~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~C   99 (240)
                      ++|+|+ +.+++..++..|++||++|+.|||+.+||+|+|||+|++++++|||++|+++|+++||||++||||||+|.+|
T Consensus         1 ~~~~e~-~~~~~~~~~~~~a~rc~~c~~~~C~~~CP~~~~i~~~~~~~~~g~~~~A~~~~~~~n~~p~~~grvCp~~~~C   79 (456)
T 2vdc_G            1 QDFAEI-YARFSDERANEQANRCSQCGVPFCQVHCPVSNNIPDWLKLTSEGRLEEAYEVSQATNNFPEICGRICPQDRLC   79 (456)
T ss_dssp             CCCCCC-CSSCCCTTHHHHHHHSCCCSSCHHHHTSTTCCCHHHHHHHHHHTCHHHHHHHHHHHCSCHHHHHHHCCGGGSG
T ss_pred             CChhhh-hccCCHHHHHHHHHhhhcCCCchhhcCCCCCCcHHHHHHHHHCCCHHHHHHHHHhhCCCCccccccCCCCcch
Confidence            479998 7899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        100 MGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       100 e~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      |++|+|+...++||+|+.|++|+.|++++.+|.+...   +.+..+++|+|||+||+||++|+.|+++|+ +|+|||+.+
T Consensus        80 e~~C~~~~~~~~~v~I~~le~~~~~~~~~~~~~~~~~---~~~~~~~~V~IIGgGpAGl~aA~~L~~~G~-~V~v~e~~~  155 (456)
T 2vdc_G           80 EGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRT---PSRELGLSVGVIGAGPAGLAAAEELRAKGY-EVHVYDRYD  155 (456)
T ss_dssp             GGGCGGGGSSSCSCCHHHHHHHHHHHHHHHTCCCCCC---SCSSCCCCEEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred             HHhcccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCC---CcCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            9999998643789999999999999988877753221   233567899999999999999999999999 799999987


Q ss_pred             C-cccccc--------------chHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201        180 Y-DMVTNV--------------SPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       180 ~-~~~~~~--------------~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      . ++.+.+              ..+.++..|++|+++..++.+++++.+..  .||+||+++...
T Consensus       156 ~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~~~~~--~~d~vvlAtG~~  218 (456)
T 2vdc_G          156 RMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGRDASLPELRR--KHVAVLVATGVY  218 (456)
T ss_dssp             SCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBTTTBCHHHHHS--SCSEEEECCCCC
T ss_pred             CCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEeccEEEhhHhHh--hCCEEEEecCCC
Confidence            4 332221              11344678999999999998888888764  499999997653

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=100.00  E-value=1.4e-39  Score=332.47  Aligned_cols=212  Identities=62%  Similarity=1.028  Sum_probs=178.0

Q ss_pred             cccccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCC
Q psy16201         16 CSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPT   95 (240)
Q Consensus        16 ~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~   95 (240)
                      ..+.++|+|+++.++++++++.||+||++|++|||+.+||+|+|||+|++++++|+|++|+++|+++||||++||||||+
T Consensus        53 ~~~~~~f~e~~~~~~~~~~~~~~a~rc~~c~~~~C~~~CP~~~~ip~~~~~~~~g~~~~A~~~~~~~n~~p~~~grvCp~  132 (1025)
T 1gte_A           53 EKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPT  132 (1025)
T ss_dssp             CCCTTCCCCCCSSCCCHHHHHHHHHHSCCCTTCHHHHTSTTCCCHHHHHHHHHTTCHHHHHHHHHHHCTTHHHHHHHCCG
T ss_pred             hhhhcCcchhccCCCCHHHHHHHHHHhcCCCCCccccCCCCCCCHHHHHHHHHCCCHHHHHHHHHhcCChhHhhcCCCCC
Confidence            45889999986789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCC-----CCCCCCeEEEECCChhHHHHHHHHHHcCCC
Q psy16201         96 SDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAK-----VDFPDTKIALIGCGPASLSCATFLSRMGYD  170 (240)
Q Consensus        96 ~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~-----~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~  170 (240)
                      +++||++|+|+...++||+|+.||||+.|+..+.++.....|..+     +..++++|+|||+||+||++|..|+++|+.
T Consensus       133 ~~~Ce~~C~~~~~~~~pv~I~~le~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~VvVIGgGpAGl~aA~~L~~~G~~  212 (1025)
T 1gte_A          133 SDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYS  212 (1025)
T ss_dssp             GGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHHTCCCCCCTTSCCGGGSCGGGGCCEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             hhhHHhhCccCCCCCCCccHhHHHHHHHHHHHHhCCccccCccccccccCCccCCCEEEEECccHHHHHHHHHHHhcCCC
Confidence            889999999976556899999999999999877776543333211     113578999999999999999999999992


Q ss_pred             cEEEEecCCC-ccccc------cc--------hHHHhccCceEEeCCccCc-ccCHHHHHhhcCCcEEEEeccc
Q psy16201        171 DITIYEKNTY-DMVTN------VS--------PRIVKGTTSRHLYGPEQGS-FLNIELISEKTAYQWVYYSNCK  228 (240)
Q Consensus       171 ~V~v~e~~~~-~~~~~------~~--------~~~~~~~gv~~~~~~~vg~-~i~~e~L~~~s~~d~V~~s~~~  228 (240)
                      +|+|||+.+. +|...      ..        .+.++..|++|+++..++. .++++.+... .||+||+++..
T Consensus       213 ~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~v~~~~~~~~-~~d~vvlAtGa  285 (1025)
T 1gte_A          213 DITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEE-GYKAAFIGIGL  285 (1025)
T ss_dssp             CEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTSBCHHHHHHT-TCCEEEECCCC
T ss_pred             cEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEeccceEEhhhcCcc-CCCEEEEecCC
Confidence            3999999864 33211      01        1345678999999998885 6788776543 69999999765

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.52  E-value=3.1e-16  Score=148.51  Aligned_cols=109  Identities=17%  Similarity=0.141  Sum_probs=79.9

Q ss_pred             HHhcCCHHHHHHHHHhhCCCCccccccCCC-CCchhhhccccccCCCccccchhhHHHHHHH----Hhh-----CCCcCC
Q psy16201         66 SISHKNYYGAAKAIFSDNPLGLTCGMVCPT-SDLCMGGCNLYAAEEGPINIGGLQQFATEVF----KDM-----GISQIR  135 (240)
Q Consensus        66 ~i~~g~~~~A~~~i~~~np~p~~cgrvC~~-~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~----~~~-----~~~~~~  135 (240)
                      .+.+|+|++|+++|+++||||++|||+||+ +++|+..|.+.  .+.||.|..+++++.++.    ...     ...+..
T Consensus         8 ~~~~~~~~~a~~~~~~~~~~~~~~~rvc~~~~~l~~~~g~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (497)
T 2bry_A            8 HMASPASTNPAHDHFETFVQAQLCQDVLSSFQGLCRALGVES--GGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQ   85 (497)
T ss_dssp             -------CCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTCCT--TCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGG
T ss_pred             hhccccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCCC--CCCcEeehhhHHHHHHHHHHHhhhhhhhhhcccccc
Confidence            457899999999999999999999999997 45799999984  368999999988765421    111     000010


Q ss_pred             CCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        136 PPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       136 ~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                       +  ......++|+|||+|++||++|..|++.|+ +|+|+|+.+.
T Consensus        86 -~--~~~~~~~dVvIVGgG~aGl~aA~~La~~G~-~V~liEk~~~  126 (497)
T 2bry_A           86 -Q--GQACTNTKCLVVGAGPCGLRAAVELALLGA-RVVLVEKRIK  126 (497)
T ss_dssp             -G--GTTTTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCSS
T ss_pred             -C--ccccCCCCEEEECccHHHHHHHHHHHHCCC-eEEEEEeccc
Confidence             0  012456899999999999999999999999 8999999864

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=99.24  E-value=8.5e-12  Score=110.96  Aligned_cols=118  Identities=12%  Similarity=0.064  Sum_probs=78.4

Q ss_pred             HhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCC
Q psy16201         67 ISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDT  146 (240)
Q Consensus        67 i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~  146 (240)
                      ........+.+..++.||+...|.++|++  .++.++.     -.||.+..+.|++.+..++.-          ......
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~----------~~~~~~   66 (326)
T 3fpz_A            4 TSTATSTSASQLHLNSTPVTHCLSDIVKK--EDWSDFK-----FAPIRESTVSRAMTSRYFKDL----------DKFAVS   66 (326)
T ss_dssp             ------------CGGGSCCCCTTTTTCCS--TTCTTCC-----CCCCCHHHHHHHHHHHHHHHH----------HHTTEE
T ss_pred             cCCCCchhhhHHHhhcCCchhhhhhhccc--ccccccc-----cCCccHHHHHHHHHHHHHhhh----------hhccCC
Confidence            34455667888889999999999999998  4555543     268999999999988655421          113467


Q ss_pred             eEEEECCChhHHHHHHHHHH--cCCCcEEEEecCCCccc--cc------------cchHHHhccCceEEeCC
Q psy16201        147 KIALIGCGPASLSCATFLSR--MGYDDITIYEKNTYDMV--TN------------VSPRIVKGTTSRHLYGP  202 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~--~G~~~V~v~e~~~~~~~--~~------------~~~~~~~~~gv~~~~~~  202 (240)
                      +|+|||+||+||+||++|++  .|+ +|+|||+.+..|.  +.            -...++++.|++|..+.
T Consensus        67 DV~IIGaGPAGlsAA~~la~~r~G~-~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~~~~  137 (326)
T 3fpz_A           67 DVIIVGAGSSGLSAAYVIAKNRPDL-KVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEG  137 (326)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCEECS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCC-eEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEEECC
Confidence            89999999999999999975  599 7999999875431  11            11234566777766554

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.03  E-value=2e-10  Score=110.44  Aligned_cols=128  Identities=19%  Similarity=0.186  Sum_probs=86.3

Q ss_pred             ccCcCCCCccccCCCCCCC----hHHHHHHHhcCCHHHHHHH--HHhhCCCCcc-ccccCCCCCchhhhccccccCCCcc
Q psy16201         41 RCLKCADAPCQKSCPTQID----IKSFITSISHKNYYGAAKA--IFSDNPLGLT-CGMVCPTSDLCMGGCNLYAAEEGPI  113 (240)
Q Consensus        41 rC~~c~~~~C~~aCP~~~d----i~~~i~~i~~g~~~~A~~~--i~~~np~p~~-cgrvC~~~~~Ce~~C~r~~~~~~pV  113 (240)
                      .|..|+.+. ...  ...+    ..+.... -.++++++++.  +.+.||+|.. +|++     +| .+|.+. +.+.++
T Consensus        15 ~C~~CH~~~-~~~--~~~~~~~~~~~~C~~-CH~~~~~~~~~~~~~~~np~~~~~~g~v-----~C-~~Ch~~-~~~~~~   83 (572)
T 1d4d_A           15 GCDSCHVSD-KGG--VTNDNLTHENGQCVS-CHGDLKELAAAAPKDKVSPHKSHLIGEI-----AC-TSCHKG-HEKSVA   83 (572)
T ss_dssp             CSTTTSSSS-SCC--CSSTTCHHHHHHHHH-HHCCHHHHHHHCC---CBTTBSSCCSCC-----CG-GGTSCS-SSCCCC
T ss_pred             ChhhhCCCC-cCC--Ccccccccccchhhh-hCCCHHHhhhhccccccCCchhhcCCCC-----Cc-cccccc-ccCCCC
Confidence            899998763 000  0011    2333333 33788889888  8999999999 6988     59 999976 447899


Q ss_pred             ccchhhHHHHHHHHhhCCCcCCCCCC-----------CCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        114 NIGGLQQFATEVFKDMGISQIRPPDA-----------KVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       114 ~I~~l~r~~~~~~~~~~~~~~~~p~~-----------~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .|...++|..+......|.....|..           +.+....+|+|||+|++||++|+.|++.|+ +|+|+|+.+.
T Consensus        84 ~c~~ch~~~~d~p~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~aa~~~~~~g~-~v~~~e~~~~  160 (572)
T 1d4d_A           84 YCDACHSFGFDMPFGGKWERKFVPVDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGA-KVILLEKEPI  160 (572)
T ss_dssp             GGGGTCCCCCCCTTCCCCCCCCCCTTSSHHHHHHHHHSCCCEECSEEEECCSHHHHHHHHHHHSSSC-CEEEECSSSS
T ss_pred             cccccccccccCCCccccccCCccccccHHHHHHHhhccCCCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            99999998654322223332221210           011235689999999999999999999999 7999999874

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.00  E-value=4.3e-10  Score=111.05  Aligned_cols=126  Identities=16%  Similarity=0.126  Sum_probs=79.1

Q ss_pred             ccccCCCCCchhhhcccc-ccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHc
Q psy16201         89 CGMVCPTSDLCMGGCNLY-AAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRM  167 (240)
Q Consensus        89 cgrvC~~~~~Ce~~C~r~-~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~  167 (240)
                      +.|.|++   |++ |.++ .. +.++.+..+..++.+ +.+.++.+.   ..++....++|+|||+|++||++|..|+++
T Consensus       341 ~~~~ci~---Cn~-C~~~~~~-~~~~~~C~~n~~~g~-e~~~~~~~~---~~~~~~~~~~VvIIGgGpAGl~aA~~L~~~  411 (729)
T 1o94_A          341 DIRVCIG---CNV-CISRWEI-GGPPMICTQNATAGE-EYRRGWHPE---KFRQTKNKDSVLIVGAGPSGSEAARVLMES  411 (729)
T ss_dssp             GCCCCCC---CCH-HHHHHHH-SSSCCCCSSCTTTTT-HHHHCCCTT---CCCCCSSCCEEEEECCSHHHHHHHHHHHHT
T ss_pred             ccccccc---cch-hcccccc-cCCceeeccCccccc-ccccccccc---ccccccCCceEEEECCCHHHHHHHHHHHHC
Confidence            4588995   885 9865 33 345555555555543 222333221   111335678999999999999999999999


Q ss_pred             CCCcEEEEecCCC-cccccc---c-------------hHHHhc------cCceEEeCCccCcccCHHHHHhhcCCcEEEE
Q psy16201        168 GYDDITIYEKNTY-DMVTNV---S-------------PRIVKG------TTSRHLYGPEQGSFLNIELISEKTAYQWVYY  224 (240)
Q Consensus       168 G~~~V~v~e~~~~-~~~~~~---~-------------~~~~~~------~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~  224 (240)
                      |+ +|+|||+.+. ++.+..   .             ...++.      .++.+..+.    .++++..... .||.|++
T Consensus       412 G~-~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~~~----~v~~~~~~~~-~~d~vvi  485 (729)
T 1o94_A          412 GY-TVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQK----PMTADDVLQY-GADKVII  485 (729)
T ss_dssp             TC-EEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEECSCC----CCCHHHHHTS-CCSEEEE
T ss_pred             CC-eEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEEEeCe----EEehhhcccc-CCCEEEE
Confidence            99 8999999864 332211   0             011121      255655443    4677665443 5999999


Q ss_pred             ecccc
Q psy16201        225 SNCKV  229 (240)
Q Consensus       225 s~~~~  229 (240)
                      ++...
T Consensus       486 AtG~~  490 (729)
T 1o94_A          486 ATGAR  490 (729)
T ss_dssp             CCCEE
T ss_pred             cCCCC
Confidence            98654

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.94  E-value=7.9e-10  Score=108.37  Aligned_cols=82  Identities=17%  Similarity=0.248  Sum_probs=60.6

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-ccccc----------------cchHHHhcc-CceEEeCCc
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DMVTN----------------VSPRIVKGT-TSRHLYGPE  203 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~~~~----------------~~~~~~~~~-gv~~~~~~~  203 (240)
                      ....++|+|||+|++||++|+.|+++|+ +|+|||+.+. ++.+.                +....+... ++++.++..
T Consensus       388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~-~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~  466 (690)
T 3k30_A          388 KESDARVLVVGAGPSGLEAARALGVRGY-DVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESP  466 (690)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCC
T ss_pred             ccccceEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCe
Confidence            3567899999999999999999999999 8999999764 33211                112233455 899888775


Q ss_pred             cCcccCHHHHHhhcCCcEEEEecccc
Q psy16201        204 QGSFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       204 vg~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                          ++.+..... .||.|++++...
T Consensus       467 ----v~~~~~~~~-~~d~lvlAtG~~  487 (690)
T 3k30_A          467 ----MTGDDIVEF-GFEHVITATGAT  487 (690)
T ss_dssp             ----CCHHHHHHT-TCCEEEECCCEE
T ss_pred             ----ecHHHHhhc-CCCEEEEcCCCc
Confidence                566655443 599999997654

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.93  E-value=1e-09  Score=110.39  Aligned_cols=93  Identities=18%  Similarity=0.167  Sum_probs=71.6

Q ss_pred             HHhhCCCCccccccCCCCCchhhhccccccCCCccccchhhHHHHHHHHhh-CCCcCCCCCCCCCCCCCeEEEECCChhH
Q psy16201         79 IFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDM-GISQIRPPDAKVDFPDTKIALIGCGPAS  157 (240)
Q Consensus        79 i~~~np~p~~cgrvC~~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~-~~~~~~~p~~~~~~~~~~VaViG~G~~G  157 (240)
                      ++.+||.+.+++.      .|+..|.|... ++||.|+.+++|+.++.... ++.....+  +....+++|+|||+|++|
T Consensus       220 ~w~~~P~~a~~~~------~~~~~~~r~~~-~~p~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~viG~G~aG  290 (852)
T 2xag_A          220 LWLDNPKIQLTFE------ATLQQLEAPYN-SDTVLVHRVHSYLERHGLINFGIYKRIKP--LPTKKTGKVIIIGSGVSG  290 (852)
T ss_dssp             HHHTCTTBCCCHH------HHHHHCCTTTT-SCHHHHHHHHHHHHHTTSSSCSSCBCSSC--CCSSCCCEEEEECCSHHH
T ss_pred             HHhcCCHHHhhHH------HHHHhCCCccc-CCcHHHHHHHHHHHHHHHHhcCcccccCC--cccCCCCeEEEECCCHHH
Confidence            3668999997753      47788888654 68999999999999875433 33211111  123567899999999999


Q ss_pred             HHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        158 LSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       158 l~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      |++|+.|+++|+ +|+|||+.+..
T Consensus       291 l~~A~~l~~~g~-~v~v~E~~~~~  313 (852)
T 2xag_A          291 LAAARQLQSFGM-DVTLLEARDRV  313 (852)
T ss_dssp             HHHHHHHHHTTC-EEEEECSSSSS
T ss_pred             HHHHHHHHHCCC-cEEEEEecCcC
Confidence            999999999999 89999998753

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.80  E-value=6e-09  Score=101.78  Aligned_cols=97  Identities=18%  Similarity=0.159  Sum_probs=73.0

Q ss_pred             HHHHHHhhCCCCccccccCCCCCchhhhccccccCCCccccchhhHHHHHHHHhh-CCCcCCCCCCCCCCCCCeEEEECC
Q psy16201         75 AAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDM-GISQIRPPDAKVDFPDTKIALIGC  153 (240)
Q Consensus        75 A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~-~~~~~~~p~~~~~~~~~~VaViG~  153 (240)
                      ....++..||...++-    .  .|+..+.|... ++||.|+.+++|+.+++... ++.....+  +....+++|+|||+
T Consensus        45 ~~~~~w~~~~~~~~~~----~--~~~~~~~r~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~viG~  115 (662)
T 2z3y_A           45 RTLQLWLDNPKIQLTF----E--ATLQQLEAPYN-SDTVLVHRVHSYLERHGLINFGIYKRIKP--LPTKKTGKVIIIGS  115 (662)
T ss_dssp             HHHHHHHTCTTBCCCH----H--HHHHHSCTTGG-GCHHHHHHHHHHHHHTTSSSCSSCBCSSC--CCSSCCCEEEEECC
T ss_pred             HHHHHHHHCCCcccCH----H--HHHHhcCCCcc-CChHHHHHHHHHHHHHHHHhcCCccccCC--CcccCCCeEEEECc
Confidence            4455688999877773    2  47777777644 68999999999999875433 33221111  13356789999999


Q ss_pred             ChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        154 GPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       154 G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      |++||++|+.|+++|+ +|+|||+.+..
T Consensus       116 G~~gl~~a~~l~~~g~-~v~~~e~~~~~  142 (662)
T 2z3y_A          116 GVSGLAAARQLQSFGM-DVTLLEARDRV  142 (662)
T ss_dssp             BHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred             CHHHHHHHHHHHHCCC-eEEEEecCCCC
Confidence            9999999999999999 89999998753

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.74  E-value=3.2e-09  Score=103.61  Aligned_cols=79  Identities=18%  Similarity=0.257  Sum_probs=58.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-ccccc---cc-------------hHHHhccCceEEeCCccC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DMVTN---VS-------------PRIVKGTTSRHLYGPEQG  205 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~~~~---~~-------------~~~~~~~gv~~~~~~~vg  205 (240)
                      ...++|+|||+|++|+++|..|+++|+ +|+|+|+.+. ++.+.   ..             ...++..+++++++..+.
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~-~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  449 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT  449 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEec
Confidence            456899999999999999999999999 8999999864 33221   11             123356789999988653


Q ss_pred             cccCHHHHHhhcCCcEEEEecccc
Q psy16201        206 SFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       206 ~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      .    +.+.   .||.|++++...
T Consensus       450 ~----~~~~---~~d~lviAtG~~  466 (671)
T 1ps9_A          450 A----DQLQ---AFDETILASGIV  466 (671)
T ss_dssp             S----SSSC---CSSEEEECCCEE
T ss_pred             H----HHhh---cCCEEEEccCCC
Confidence            2    2221   399999997653

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.74  E-value=9.5e-09  Score=83.40  Aligned_cols=36  Identities=33%  Similarity=0.483  Sum_probs=33.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .+|+|||+||+||++|+.|+++|+ +|+||||.+..|
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~-~V~v~Ek~~~~G   38 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGH-QVHLFDKSRGSG   38 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCCCC
Confidence            479999999999999999999999 899999987643

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.57  E-value=1.5e-07  Score=88.12  Aligned_cols=83  Identities=19%  Similarity=0.293  Sum_probs=64.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCCcc-ccc---------------cchHHHhccCceEEeCCccC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTYDM-VTN---------------VSPRIVKGTTSRHLYGPEQG  205 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~~~-~~~---------------~~~~~~~~~gv~~~~~~~vg  205 (240)
                      ..++|+|||+|++|+++|..|++.|  + +|+|||+.+..+ .+.               ...+.++..+++|+++..++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~-~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   83 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG   83 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCC-CEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe
Confidence            4579999999999999999999998  8 899999987532 111               11233457899999999998


Q ss_pred             cccCHHHHHhhcCCcEEEEecccc
Q psy16201        206 SFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       206 ~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      +.+.++.+...  ||.|++++...
T Consensus        84 ~~V~~~~~~~~--~d~lVlAtGs~  105 (460)
T 1cjc_A           84 RDVTVQELQDA--YHAVVLSYGAE  105 (460)
T ss_dssp             TTBCHHHHHHH--SSEEEECCCCC
T ss_pred             eEEEeccceEE--cCEEEEecCcC
Confidence            88888776544  99999997654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.56  E-value=1.1e-08  Score=98.18  Aligned_cols=104  Identities=12%  Similarity=0.124  Sum_probs=79.7

Q ss_pred             CccccCCCCCCChHHHHHHHhc-------------CCHHHHHHHHHhhCCCCccccccCCCCCchhhhccccccCCCccc
Q psy16201         48 APCQKSCPTQIDIKSFITSISH-------------KNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPIN  114 (240)
Q Consensus        48 ~~C~~aCP~~~di~~~i~~i~~-------------g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~~~~~~pV~  114 (240)
                      -++...||....+..|++....             +++.++++.+...+++|.+   .|..  .|..+|..   ..+++.
T Consensus        22 vy~~~~Cp~C~~~k~~L~~~~i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~v---~i~g--~~igG~~~---l~~~~~   93 (598)
T 2x8g_A           22 LFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQM---FVRG--KFIGDSQT---VLKYYS   93 (598)
T ss_dssp             EEECTTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCEE---EETT--EEEECHHH---HHHHHH
T ss_pred             EEECCCChhHHHHHHHHHHCCCCcEEEEcccCcchHHHHHHHHHHhCCceeCEE---EECC--EEEEeeeh---hhhhhh
Confidence            3567799999999999987643             4556777777888899988   3443  45555431   136788


Q ss_pred             cchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201        115 IGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEK  177 (240)
Q Consensus       115 I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~  177 (240)
                      ++.|++++.+.                 ...++|+|||+||+|+++|..|++.|+ +|+|||+
T Consensus        94 ~g~L~~~l~~~-----------------~~~~dvvVIG~GpAGl~aA~~l~~~g~-~v~liE~  138 (598)
T 2x8g_A           94 NDELAGIVNES-----------------KYDYDLIVIGGGSGGLAAGKEAAKYGA-KTAVLDY  138 (598)
T ss_dssp             TTCHHHHHHCC-----------------SSSEEEEEECCSHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             cCcchhhcccc-----------------cccccEEEECCCccHHHHHHHHHhCCC-eEEEEec
Confidence            88898887631                 235699999999999999999999999 7999997

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.55  E-value=1.5e-07  Score=88.01  Aligned_cols=82  Identities=18%  Similarity=0.238  Sum_probs=64.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHH-c------CCCcEEEEecCCCc-cccc------------c---chHHHhccCceEEeC
Q psy16201        145 DTKIALIGCGPASLSCATFLSR-M------GYDDITIYEKNTYD-MVTN------------V---SPRIVKGTTSRHLYG  201 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~-~------G~~~V~v~e~~~~~-~~~~------------~---~~~~~~~~gv~~~~~  201 (240)
                      .++|+|||+||+|+++|..|++ .      |+ +|+|||+.+.. +.+.            +   ..+.++..+++|..+
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~-~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~   81 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDM-AVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGN   81 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCE-EEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCC-eEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEee
Confidence            4689999999999999999999 7      99 89999998643 2111            1   113345678999999


Q ss_pred             CccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201        202 PEQGSFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       202 ~~vg~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      +.+++.+.++.....  ||.|++++...
T Consensus        82 v~v~~~v~~~~~~~~--~d~lViAtG~~  107 (456)
T 1lqt_A           82 VVVGEHVQPGELSER--YDAVIYAVGAQ  107 (456)
T ss_dssp             CCBTTTBCHHHHHHH--SSEEEECCCCC
T ss_pred             EEECCEEEECCCeEe--CCEEEEeeCCC
Confidence            988888888776544  99999998664

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.42  E-value=3.8e-08  Score=88.97  Aligned_cols=69  Identities=16%  Similarity=0.280  Sum_probs=51.9

Q ss_pred             CccccchhhHHHHHHHHhhCCCcCCCCCCCCC-----------------CCCCeEEEECCChhHHHHHHHHHHc--CCCc
Q psy16201        111 GPINIGGLQQFATEVFKDMGISQIRPPDAKVD-----------------FPDTKIALIGCGPASLSCATFLSRM--GYDD  171 (240)
Q Consensus       111 ~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~-----------------~~~~~VaViG~G~~Gl~~a~~L~~~--G~~~  171 (240)
                      -+|+|+.|+||+.|++...+|..+..+.. ..                 ....+|+|||+|++|+++|+.|+++  |+ +
T Consensus        15 ~~v~~~~~er~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~dv~IiG~G~aGl~aA~~la~~~~g~-~   92 (326)
T 2gjc_A           15 LHLNSTPVTHCLSDIVKKEDWSDFKFAPI-RESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDL-K   92 (326)
T ss_dssp             -CGGGSCCCCTTTTTCCSTTCTTCCCCCC-CHHHHHHHHHHHHHHHHHHTTEESEEEECCSHHHHHHHHHHHHHCTTS-C
T ss_pred             cccchHHHHHHHHHHHHhcCCCccccccc-cccccchhhhhhhhhhhcccCcCCEEEECccHHHHHHHHHHHhcCCCC-e
Confidence            46889999999999877777754322111 00                 1123899999999999999999999  99 8


Q ss_pred             EEEEecCCCc
Q psy16201        172 ITIYEKNTYD  181 (240)
Q Consensus       172 V~v~e~~~~~  181 (240)
                      |+|+|+....
T Consensus        93 V~v~e~~~~~  102 (326)
T 2gjc_A           93 VCIIESSVAP  102 (326)
T ss_dssp             EEEECSSSSC
T ss_pred             EEEEecCccc
Confidence            9999997753

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.37  E-value=4.1e-07  Score=86.11  Aligned_cols=72  Identities=15%  Similarity=0.157  Sum_probs=53.6

Q ss_pred             CCCccccchhhHHHHHHHHhhCCCcCCCCCC-CCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC-Ccc
Q psy16201        109 EEGPINIGGLQQFATEVFKDMGISQIRPPDA-KVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT-YDM  182 (240)
Q Consensus       109 ~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~-~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~-~~~  182 (240)
                      .|.+|+|+.+++|+.+.....+...+ .+.. +.+...++|+|||+|++|+++|..|++.|+ +|+|+|+.. .++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~~~GG   80 (523)
T 1mo9_A            7 RNDHLTINQWATRIDEILEAPDGGEV-IYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWPFLGG   80 (523)
T ss_dssp             TTCCCCHHHHHHHHHHHHHCTTCCCE-EEECCTTCCSCBSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSC
T ss_pred             ccchhhccchhhhhHHHhhccccchh-hhccCCCCCCcCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCCCCC
Confidence            37899999999998876554221111 0111 123456799999999999999999999999 799999988 444

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.36  E-value=2.2e-07  Score=86.39  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=31.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      |+|+|||+|++||+||++|+++|+ +|+|+|+++..|
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~-~V~VlEa~~~~G   37 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGI-PVLLLEQRDKPG   37 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTC-CEEEECCC----
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCC-cEEEEccCCCCC
Confidence            689999999999999999999999 899999998744

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.28  E-value=6.3e-07  Score=79.41  Aligned_cols=34  Identities=21%  Similarity=0.454  Sum_probs=31.9

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|+|||+||+||++|+.|+++|+ +|+|+||.+.
T Consensus         5 yDViIVGaGpaGl~~A~~La~~G~-~V~v~Er~~~   38 (397)
T 3oz2_A            5 YDVLVVGGGPGGSTAARYAAKYGL-KTLMIEKRPE   38 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            589999999999999999999999 8999999764

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.25  E-value=5.6e-07  Score=83.44  Aligned_cols=57  Identities=21%  Similarity=0.160  Sum_probs=41.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCCCccccccchHHHhccCceEEeCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGP  202 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~  202 (240)
                      ....+|+|||+|++||+||++|+++ |+ +|+|+|+++..|.+-.+  .....|..|..|.
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~-~V~VlE~~~~~GG~~~T--~~~~~G~~~D~G~   65 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGP-SWMIVDSNETPGGLAST--DVTPEGFLYDVGG   65 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCS-CEEEEESSSSCCGGGCE--EECTTSCEEESSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCC-CEEEEECCCCCcCCeee--EEecCCEEEEeCc
Confidence            3457899999999999999999985 99 89999999875533221  1122455555444

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.25  E-value=1.5e-06  Score=79.71  Aligned_cols=37  Identities=38%  Similarity=0.604  Sum_probs=33.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC-CC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN-TY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~-~~  180 (240)
                      ...++|+|||+|++||++|+.|.++|+ +|+|||++ +.
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~-~V~VlE~~~~~   79 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGH-DVTILEANANR   79 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSC-EEEEECSCSSC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCC-cEEEEeccccc
Confidence            456799999999999999999999999 89999998 54

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.22  E-value=1.1e-06  Score=78.55  Aligned_cols=34  Identities=32%  Similarity=0.540  Sum_probs=31.8

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|+|||+||+||++|..|+++|+ +|+||||.+.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~-~v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGI-KVTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-CEEEEecCCC
Confidence            589999999999999999999999 8999999764

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.15  E-value=1.7e-06  Score=75.40  Aligned_cols=38  Identities=32%  Similarity=0.506  Sum_probs=33.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      +..+|+|||+||+||+||.+|+|+|+ +|+|||+...++
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar~g~-~v~lie~~~~gg   42 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGRARK-QIALFDNNTNRN   42 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSCCGG
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCCCC
Confidence            45689999999999999999999999 799999976543

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.12  E-value=1.7e-06  Score=74.95  Aligned_cols=35  Identities=29%  Similarity=0.484  Sum_probs=32.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -++|+|||+||+||+||.+|+++|+ +|+|||+...
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~-~v~liE~~~~   38 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSL-KPVMYEGFMA   38 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCSSG
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCC
Confidence            3689999999999999999999999 7999999764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.11  E-value=2.4e-06  Score=74.42  Aligned_cols=37  Identities=32%  Similarity=0.535  Sum_probs=33.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      +.+|+|||+||+||+||..|+++|+ +|+|||+...++
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~-~V~liE~~~~gG   42 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANL-KTVMIERGIPGG   42 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCTTG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCC
Confidence            5799999999999999999999999 799999876544

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.10  E-value=1.2e-06  Score=87.22  Aligned_cols=104  Identities=17%  Similarity=0.150  Sum_probs=67.4

Q ss_pred             HHHHHHHHHhhCCCCccccccCCCCCchhhhcccccc-CCCccccchhhHHHHHHHHhh-CCCcC--CCCCCCCCCCCCe
Q psy16201         72 YYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAA-EEGPINIGGLQQFATEVFKDM-GISQI--RPPDAKVDFPDTK  147 (240)
Q Consensus        72 ~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~~~-~~~pV~I~~l~r~~~~~~~~~-~~~~~--~~p~~~~~~~~~~  147 (240)
                      ...++..++..||+..++...|..  .+..   |+.. ......|..+++|+.+..... ++...  ..+..+....+++
T Consensus       264 irn~il~~w~~np~~~l~~~~~~~--~~~~---r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (776)
T 4gut_A          264 LRNLILALWYTNCKEALTPQKCIP--HIIV---RGLVRIRCVQEVERILYFMTRKGLINTGVLSVGADQYLLPKDYHNKS  338 (776)
T ss_dssp             HHHHHHHHHHHCTTSCCCHHHHGG--GCCC---SSTHHHHHHHHHHHHHHHHHHHTSSSCTTCCCCGGGCSSCGGGTSCE
T ss_pred             ehHHHHHHHHHCCceeeeHHHhhh--hccc---ccccccccHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCCCe
Confidence            345666778899999888776643  2221   2211 012345778888888764321 11110  0011112245689


Q ss_pred             EEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        148 IALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       148 VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      |+|||+|++||++|+.|++.|+ +|+|+|+.+..
T Consensus       339 v~viG~G~~Gl~aA~~l~~~g~-~v~v~E~~~~~  371 (776)
T 4gut_A          339 VIIIGAGPAGLAAARQLHNFGI-KVTVLEAKDRI  371 (776)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEecccce
Confidence            9999999999999999999999 89999997753

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.09  E-value=2.5e-06  Score=77.25  Aligned_cols=37  Identities=32%  Similarity=0.405  Sum_probs=32.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+..+|+|||+|++||++|+.|+++|+ +|+|+|+...
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~E~~~~   57 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSGI-DCDVYEAVKE   57 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            456799999999999999999999999 8999999874

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.08  E-value=3.6e-06  Score=76.41  Aligned_cols=37  Identities=41%  Similarity=0.701  Sum_probs=33.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcC-CCcEEEEecCCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMG-YDDITIYEKNTYD  181 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~~~  181 (240)
                      ..++|+|||+|++||++|+.|+++| + +|+|+|+.+..
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~-~v~v~E~~~~~   42 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFH-DYTILERTDHV   42 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCC-CEEEECSSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCC-cEEEEECCCCC
Confidence            4579999999999999999999999 9 79999998764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.07  E-value=3.8e-06  Score=72.91  Aligned_cols=35  Identities=26%  Similarity=0.267  Sum_probs=32.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .++|+|||+|++||++|..|+++|+ +|+|+|+.+.
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~   41 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQA-SVKIIESLPQ   41 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence            3689999999999999999999999 7999999864

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.07  E-value=3e-06  Score=76.74  Aligned_cols=36  Identities=28%  Similarity=0.443  Sum_probs=32.9

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ++|+|||+|++||++|+.|+++|+ +|+|+|+.+..|
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~-~V~vlE~~~~~G   36 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGH-EVEVFERLPITG   36 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSSSSB
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-ceEEEeCCCCCC
Confidence            479999999999999999999999 899999987643

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.07  E-value=3.2e-06  Score=76.92  Aligned_cols=35  Identities=29%  Similarity=0.521  Sum_probs=32.4

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ++|+|||+|++||++|+.|+++|+ +|+|+|+.+..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~-~V~vlE~~~~~   35 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGH-EIIVLEKSAMI   35 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence            479999999999999999999999 89999998754

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.04  E-value=2.8e-06  Score=73.90  Aligned_cols=36  Identities=31%  Similarity=0.550  Sum_probs=32.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...++|+|||+|++||++|..|+++|+ +|+|+|+.+
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~-~v~vie~~~   55 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEI-KPILYEGMM   55 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            456799999999999999999999999 799999954

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.02  E-value=4.8e-06  Score=77.24  Aligned_cols=39  Identities=31%  Similarity=0.472  Sum_probs=35.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ...++|+|||+|++||++|+.|+++|+ +|+|||+.+..|
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~-~v~v~E~~~~~G   47 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGY-KVTVLEARTRPG   47 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeccCCCC
Confidence            346799999999999999999999999 899999988643

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.01  E-value=5.7e-06  Score=75.49  Aligned_cols=84  Identities=18%  Similarity=0.209  Sum_probs=57.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-----cc-------------ccchHHHhccCceEEeCCccC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-----VT-------------NVSPRIVKGTTSRHLYGPEQG  205 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-----~~-------------~~~~~~~~~~gv~~~~~~~vg  205 (240)
                      ...+|+|||+|++|+++|..|.+.++ +|+|||+.+...     +.             ....+.++..+++++++.++-
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~-~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~   86 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCD-DITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFAT   86 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCS-CEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEE
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCC-EEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEE
Confidence            35699999999999999999987889 799999987522     10             112344567789998886552


Q ss_pred             c------ccCHHHHHhhcCCcEEEEecccc
Q psy16201        206 S------FLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       206 ~------~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      .      .+.++.-.. -.||.+++++...
T Consensus        87 ~id~~~~~v~~~~g~~-~~yd~lvlAtG~~  115 (385)
T 3klj_A           87 SIDPNNKLVTLKSGEK-IKYEKLIIASGSI  115 (385)
T ss_dssp             EEETTTTEEEETTSCE-EECSEEEECCCEE
T ss_pred             EEECCCCEEEECCCCE-EECCEEEEecCCC
Confidence            2      122221111 1489999997653

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.99  E-value=2.8e-06  Score=77.54  Aligned_cols=36  Identities=19%  Similarity=0.373  Sum_probs=32.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC------CCcEEEEecCCCc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG------YDDITIYEKNTYD  181 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G------~~~V~v~e~~~~~  181 (240)
                      .++|+|||+|++||++|+.|+++|      + +|+|+|+.+..
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~-~V~vlEa~~~~   46 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPL-ELTLVEASPRV   46 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSE-EEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCC-CEEEEECCCCC
Confidence            468999999999999999999999      9 89999998653

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.98  E-value=6e-06  Score=72.09  Aligned_cols=34  Identities=29%  Similarity=0.527  Sum_probs=31.8

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|+|||+|++|+++|..|+++|+ +|+|+|+.+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~-~v~vie~~~~   37 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGL-SYVILDAEAS   37 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSC-CEEEECCSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCC
Confidence            589999999999999999999999 7999999864

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.98  E-value=4.9e-06  Score=78.17  Aligned_cols=37  Identities=30%  Similarity=0.378  Sum_probs=34.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC-CCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG-YDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~~~~  182 (240)
                      .++|+|||+|++||+||+.|++.| + +|+|+|++++.|
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~-~V~VlEa~~riG   45 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQ-DCLVLEARDRVG   45 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCC-SEEEECSSSSSB
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCC-CEEEEeCCCCCC
Confidence            468999999999999999999999 9 899999998644

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=97.97  E-value=6.2e-06  Score=77.38  Aligned_cols=37  Identities=16%  Similarity=0.362  Sum_probs=33.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .++|+|||+|++||++|+.|+++|+ +|+|+|+++..|
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~-~V~vlE~~~~~G   40 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGL-NVVVLEARDRVG   40 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTC-CEEEECSSSSSB
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCCCC
Confidence            4589999999999999999999999 899999988643

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=97.96  E-value=5.9e-06  Score=73.60  Aligned_cols=38  Identities=18%  Similarity=0.291  Sum_probs=33.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ....+|+|||+|++|+++|+.|+++|+ +|+|+|+...+
T Consensus        15 ~~~~dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~~~~   52 (382)
T 1ryi_A           15 KRHYEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   52 (382)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCCC
Confidence            345689999999999999999999999 89999997643

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.96  E-value=5.6e-06  Score=75.55  Aligned_cols=84  Identities=12%  Similarity=0.194  Sum_probs=55.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCCCcc-----cc-c-------------cchHHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTYDM-----VT-N-------------VSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~~~~-----~~-~-------------~~~~~~~~~gv~~~~~~~  203 (240)
                      ..++|+|||+|++|+++|..|+++|++ +|+++|+.+...     ++ .             .....+...++++.++..
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   87 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAE   87 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCE
Confidence            457899999999999999999999982 399999976421     11 0             112344677888888754


Q ss_pred             cCc------ccCHHHHHhhcCCcEEEEeccc
Q psy16201        204 QGS------FLNIELISEKTAYQWVYYSNCK  228 (240)
Q Consensus       204 vg~------~i~~e~L~~~s~~d~V~~s~~~  228 (240)
                      +..      .+.++.-.. -.||.+++++..
T Consensus        88 v~~id~~~~~v~~~~g~~-~~~d~lvlAtG~  117 (415)
T 3lxd_A           88 VVSLDPAAHTVKLGDGSA-IEYGKLIWATGG  117 (415)
T ss_dssp             EEEEETTTTEEEETTSCE-EEEEEEEECCCE
T ss_pred             EEEEECCCCEEEECCCCE-EEeeEEEEccCC
Confidence            422      122211111 138888888654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.96  E-value=9.9e-06  Score=74.06  Aligned_cols=83  Identities=16%  Similarity=0.214  Sum_probs=55.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCCCcc-----ccc-------------cchHHHhccCceEEeCCccCc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTYDM-----VTN-------------VSPRIVKGTTSRHLYGPEQGS  206 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~~~~-----~~~-------------~~~~~~~~~gv~~~~~~~vg~  206 (240)
                      ++|+|||+|++|+++|..|+++|++ +|+++|+.+...     +..             .....+...+++++++..+-.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   82 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA   82 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence            4899999999999999999999982 399999987421     111             112334567889988854421


Q ss_pred             ------ccCHHHHHhhcCCcEEEEecccc
Q psy16201        207 ------FLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       207 ------~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                            .+.++.-.. -.||.+++++...
T Consensus        83 id~~~~~v~~~~g~~-~~~d~lvlAtG~~  110 (410)
T 3ef6_A           83 LDVQTRTISLDDGTT-LSADAIVIATGSR  110 (410)
T ss_dssp             EETTTTEEEETTSCE-EECSEEEECCCEE
T ss_pred             EECCCCEEEECCCCE-EECCEEEEccCCc
Confidence                  122111111 1489999997644

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.95  E-value=6.1e-06  Score=76.06  Aligned_cols=39  Identities=23%  Similarity=0.301  Sum_probs=33.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ...++|+|||+|++||++|+.|+++|+ +|+|+|+.+..|
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~-~v~v~E~~~~~G   52 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRSRGT-DAVLLESSARLG   52 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHTTTC-CEEEECSSSSSB
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCCCCC
Confidence            346799999999999999999999999 899999998643

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.95  E-value=7.2e-06  Score=70.71  Aligned_cols=33  Identities=18%  Similarity=0.393  Sum_probs=31.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      .++|+|||+|++|+++|+.|+++|+ +|+|+|+.
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~   47 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYML-KTLVIGET   47 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCC-cEEEEecc
Confidence            4699999999999999999999999 79999997

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.95  E-value=8.1e-06  Score=75.78  Aligned_cols=38  Identities=18%  Similarity=0.191  Sum_probs=34.5

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ...+|+|||+|++||++|..|++.|+ +|+|+|+++..|
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~-~V~vlE~~~~~G   47 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGK-KVLHIDKQDHYG   47 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCCCCC
Confidence            35689999999999999999999999 799999998644

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.95  E-value=6.8e-06  Score=70.78  Aligned_cols=37  Identities=32%  Similarity=0.498  Sum_probs=32.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEE-EecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITI-YEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v-~e~~~~~~  182 (240)
                      .++|+|||+|++||++|..|+++|+ +|+| +|+...++
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~li~e~~~~gG   41 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGL-KNVVMFEKGMPGG   41 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTC-SCEEEECSSSTTG
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-CeEEEEeCCCCCc
Confidence            4689999999999999999999999 7999 99955444

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.94  E-value=9.6e-06  Score=65.14  Aligned_cols=33  Identities=30%  Similarity=0.629  Sum_probs=31.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||+|++|+++|..|++.|. +|+++|+.+
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~-~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGL-KVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            379999999999999999999999 799999876

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=97.93  E-value=7.6e-06  Score=74.33  Aligned_cols=34  Identities=21%  Similarity=0.284  Sum_probs=31.6

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|+|||+|++||++|+.|++.|+ +|+|+|+++.
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~-~V~vlE~~~~   35 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGK-KVLLLEGGER   35 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCC-eEEEEecCCC
Confidence            379999999999999999999999 8999999764

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=97.93  E-value=8.2e-06  Score=71.70  Aligned_cols=34  Identities=26%  Similarity=0.378  Sum_probs=31.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|++|+++|+.|+++|+ +|+|+|+.+
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~-~V~vlE~~~   37 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGH-EVLVAEAAE   37 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCC
Confidence            4589999999999999999999999 899999985

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.92  E-value=6.5e-06  Score=75.77  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=32.8

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~~~~  182 (240)
                      ++|+|||+|++||++|++|+++|+. +|+|+|+.+..|
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~G   40 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLG   40 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSB
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence            5899999999999999999999983 499999987643

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.92  E-value=1.2e-05  Score=73.23  Aligned_cols=35  Identities=20%  Similarity=0.409  Sum_probs=32.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      +++|+|||+|++|+++|..|++.|++ +|+|+|+.+
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~   36 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEK   36 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSS
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence            36899999999999999999999984 699999987

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.89  E-value=1.3e-05  Score=75.80  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=31.6

Q ss_pred             CeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      ++|+|||+|++||++|..|++.  |+ +|+|||+.+.
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~-~V~lie~~~~   37 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETA-EIIMFERGEY   37 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSS-EEEEECSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCC-CEEEEECCCC
Confidence            5899999999999999999998  78 8999999875

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.89  E-value=9.6e-06  Score=75.30  Aligned_cols=36  Identities=19%  Similarity=0.245  Sum_probs=33.4

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .+|+|||+|++||++|+.|+++|+ +|+|+|+.+..|
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~-~v~v~E~~~~~G   75 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGF-KTLLLEARDRIG   75 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTC-CEEEECSSSBSB
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCC-CEEEEeCCCCCC
Confidence            689999999999999999999999 899999998644

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.89  E-value=1.1e-05  Score=72.88  Aligned_cols=35  Identities=29%  Similarity=0.564  Sum_probs=32.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++||++|..|++.|+ +|+|||+.+.
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   39 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSPQ   39 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCC
Confidence            4699999999999999999999999 8999999764

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.88  E-value=1.3e-05  Score=73.25  Aligned_cols=38  Identities=13%  Similarity=0.145  Sum_probs=34.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNTYDM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~~~~  182 (240)
                      ...+|+|||+|++||++|+.|+++ |+ +|+|+|+++..|
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~-~v~v~E~~~~~G   44 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDK-RVLVLERRPHIG   44 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCC-CEEEECSSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCC-CEEEEeCCCCCC
Confidence            357899999999999999999999 99 899999987643

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.88  E-value=1e-05  Score=75.12  Aligned_cols=38  Identities=26%  Similarity=0.444  Sum_probs=34.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..++|+|||+|++||++|+.|+++|+ +|+|+|+.+..|
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~-~v~v~E~~~~~G   49 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEGKAG   49 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-cEEEEEeCCCCC
Confidence            35799999999999999999999999 899999998643

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.87  E-value=1.1e-05  Score=68.95  Aligned_cols=33  Identities=27%  Similarity=0.323  Sum_probs=31.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|+|||+|++||++|..|+++|+ +|+|+|+..
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   35 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARK-NILLVDAGE   35 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            589999999999999999999999 899999865

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.86  E-value=1.1e-05  Score=73.92  Aligned_cols=36  Identities=28%  Similarity=0.569  Sum_probs=33.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      .++|+|||+|++||++|+.|+++|+ +|+|+|+++..
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~-~v~v~E~~~~~   40 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGL-SVAVIEARDRV   40 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-cEEEEECCCCC
Confidence            4589999999999999999999999 79999998753

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=97.86  E-value=1.3e-05  Score=72.04  Aligned_cols=35  Identities=23%  Similarity=0.459  Sum_probs=32.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      .+|+|||+|++|+++|+.|+++|+ +|+|+|+...+
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~-~V~vlE~~~~~   39 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGH-RVLVLERHTFF   39 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence            589999999999999999999999 79999998643

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.85  E-value=1.5e-05  Score=74.10  Aligned_cols=38  Identities=26%  Similarity=0.402  Sum_probs=34.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ...++|+|||+|++||++|+.|+++|+ +|+|+|+.+..
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~-~v~vlE~~~~~   68 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASERP   68 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEECCCCC
Confidence            346799999999999999999999999 89999998753

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.85  E-value=1.3e-05  Score=70.04  Aligned_cols=38  Identities=32%  Similarity=0.453  Sum_probs=33.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..++|+|||+|++|+++|..|++.|+ +|+++|+...++
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~gg   44 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQL-STLILEKGMPGG   44 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCTTG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCC-cEEEEeCCCCCc
Confidence            35689999999999999999999999 799999985443

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.85  E-value=9.9e-06  Score=74.60  Aligned_cols=34  Identities=29%  Similarity=0.626  Sum_probs=31.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .++|+|||+||+||++|+.|+++|+ +|+|+|+..
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~-~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence            4689999999999999999999999 899999876

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=97.85  E-value=1.2e-05  Score=72.64  Aligned_cols=34  Identities=29%  Similarity=0.655  Sum_probs=31.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|++|+++|+.|+++|+ +|+|+|+..
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~-~V~v~E~~~   38 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGF-KVKIVEKQK   38 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            3689999999999999999999999 899999986

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.84  E-value=1.4e-05  Score=72.25  Aligned_cols=36  Identities=36%  Similarity=0.764  Sum_probs=32.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|++||++|..|++.|+ +|+|||+.+.
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   60 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDND   60 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            35699999999999999999999999 8999999763

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.84  E-value=8.8e-06  Score=71.96  Aligned_cols=34  Identities=21%  Similarity=0.476  Sum_probs=31.4

Q ss_pred             CeEEEECCChhHHHHHHHHHH---cCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSR---MGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~---~G~~~V~v~e~~~~  180 (240)
                      ++|+|||+|++|+++|+.|++   .|+ +|+|||+...
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~-~V~v~Ek~~~   38 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPL-YLAVWDKADD   38 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCE-EEEEECSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCc-eEEEEECCCC
Confidence            379999999999999999999   999 8999999864

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.84  E-value=1.5e-05  Score=71.49  Aligned_cols=37  Identities=27%  Similarity=0.385  Sum_probs=33.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ...+|+|||+|++|+++|..|++.|+ +|+|+|+....
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~-~v~viE~~~~~   46 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGW-DVRLHEKSSEL   46 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCC
Confidence            35799999999999999999999999 89999998643

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.83  E-value=1.9e-05  Score=70.21  Aligned_cols=35  Identities=29%  Similarity=0.620  Sum_probs=32.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...+|+|||+|++|+++|+.|+++|+ +|+|+|+..
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~-~V~vle~~~   39 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGY-SVHILARDL   39 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccC
Confidence            35699999999999999999999999 899999865

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=97.83  E-value=1.6e-05  Score=70.83  Aligned_cols=36  Identities=11%  Similarity=0.262  Sum_probs=32.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ..+|+|||+|++|+++|+.|+++|+ +|+|+|+...+
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~-~V~vie~~~~~   38 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFDPP   38 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCC
Confidence            3589999999999999999999999 79999998653

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.83  E-value=1.6e-05  Score=69.17  Aligned_cols=38  Identities=26%  Similarity=0.556  Sum_probs=33.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..++|+|||+|++|+++|..|++.|+ +|+|+|+...++
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~gg   52 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGF-SVAILDKAVAGG   52 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSTTG
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCCCc
Confidence            34689999999999999999999999 799999965433

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=97.83  E-value=1.4e-05  Score=70.83  Aligned_cols=34  Identities=24%  Similarity=0.349  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..++|+|||+|++|+++|+.|+ +|+ +|+|+|+.+
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~G~-~V~vlE~~~   41 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-AHG-RVVVLEREA   41 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-TTS-CEEEECSSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-CCC-CEEEEECCC
Confidence            4679999999999999999999 699 899999985

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.81  E-value=1.4e-05  Score=71.73  Aligned_cols=34  Identities=38%  Similarity=0.647  Sum_probs=31.7

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|+|||+|++|+++|..|++.|+ +|+|+|+...
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   36 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQTP   36 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCH
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            589999999999999999999999 7999998763

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=97.81  E-value=2.7e-05  Score=74.25  Aligned_cols=60  Identities=18%  Similarity=0.253  Sum_probs=45.1

Q ss_pred             CccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        111 GPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       111 ~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .++.+..+++|.........      +   .+....+|+|||+|++||++|+.|+++|+ +|+|+|+.+.
T Consensus       101 ~~~~~~~l~~a~~~~~~~~~------~---~~~~~~DVvVVGaG~aGl~aA~~la~~G~-~V~vlEk~~~  160 (571)
T 1y0p_A          101 DEPTIAELAKDKSERQAALA------S---APHDTVDVVVVGSGGAGFSAAISATDSGA-KVILIEKEPV  160 (571)
T ss_dssp             CCCCTTGGGGGHHHHHHHHH------S---CCSEECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CCcchhHHHHHHHHhhhhhc------c---CCCCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            46667777777665433211      0   12335699999999999999999999999 8999999875

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.80  E-value=2e-05  Score=70.20  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=32.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|+.|+++|+ +|+|+|+...
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~-~V~lle~~~~   39 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGE-EVTVIEKRFI   39 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSST
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence            4689999999999999999999999 7999999853

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.80  E-value=1.5e-05  Score=71.75  Aligned_cols=34  Identities=44%  Similarity=0.568  Sum_probs=31.5

Q ss_pred             CeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      ++|+|||+|++||++|..|++.  |+ +|+|+|+.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~-~V~v~E~~~~   36 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLW-AIDIVEKNDE   36 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTS-EEEEECSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCC-CEEEEECCCC
Confidence            4799999999999999999999  99 8999999764

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.79  E-value=2.2e-05  Score=71.28  Aligned_cols=35  Identities=31%  Similarity=0.524  Sum_probs=32.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCc-EEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDD-ITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~-V~v~e~~~~  180 (240)
                      ..+|+|||+|++||++|..|++.|+ + |+|+|+.+.
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~-~~v~v~E~~~~   39 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGI-GKVTLLESSSE   39 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CeEEEEECCCC
Confidence            4689999999999999999999999 9 999999764

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.79  E-value=1.9e-05  Score=72.85  Aligned_cols=35  Identities=23%  Similarity=0.419  Sum_probs=32.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++||++|++|+++|  + +|+|+|+.+.
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~-~v~v~E~~~~   40 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDL-NITLLEAGER   40 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTS-EEEEECSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCC-CEEEEECCCC
Confidence            468999999999999999999999  9 8999999775

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.79  E-value=1.9e-05  Score=69.02  Aligned_cols=35  Identities=17%  Similarity=0.398  Sum_probs=32.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .++|+|||+|++|+++|..|++.|+ +|+|+|+.+.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~   39 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGL-SFRFVDPLPE   39 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            4689999999999999999999999 7999999764

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=97.78  E-value=2e-05  Score=72.91  Aligned_cols=36  Identities=19%  Similarity=0.442  Sum_probs=32.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|++|+++|+.|+++|+ +|+|+|+.+.
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~-~V~llEk~~~   61 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGR-RVLVIDHARA   61 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            35689999999999999999999999 8999999875

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.78  E-value=2.1e-05  Score=72.96  Aligned_cols=38  Identities=29%  Similarity=0.461  Sum_probs=33.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..++|+|||+|++|+++|..|++.|+ +|+|+|+...|+
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~~~GG   40 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGA-QVTLIERGTIGG   40 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSTTH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCCc
Confidence            35799999999999999999999999 899999985443

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=97.77  E-value=1.8e-05  Score=70.24  Aligned_cols=35  Identities=14%  Similarity=0.385  Sum_probs=32.1

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      .+|+|||+|++|+++|+.|+++|+ +|+|+|+...+
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~-~V~vle~~~~~   37 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGL-NVLMTDAHMPP   37 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTC-CEEEECSSCSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCC
Confidence            489999999999999999999999 79999998643

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.77  E-value=3.3e-05  Score=71.39  Aligned_cols=58  Identities=19%  Similarity=0.238  Sum_probs=43.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCCcc-----ccc--------------cchHHHhccCceEEeCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTYDM-----VTN--------------VSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~~~-----~~~--------------~~~~~~~~~gv~~~~~~~v  204 (240)
                      ++|+|||+|++|+++|..|+++  |+ +|+|+|+.+..+     ...              .....+...++.++++.++
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~-~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V   81 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQA-EISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREV   81 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSS-EEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCC-cEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEE
Confidence            5899999999999999999998  89 899999987432     110              1224445678887776654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.77  E-value=3.3e-05  Score=73.68  Aligned_cols=37  Identities=27%  Similarity=0.428  Sum_probs=33.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      ...++|+|||+|++||++|..|++.  |+ +|+|||+.+.
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~-~V~vie~~~~   72 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEED-EIIMVERGEY   72 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSS-EEEEECSSSC
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCC-CEEEEECCCC
Confidence            4568999999999999999999998  89 8999999875

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.76  E-value=2.1e-05  Score=70.79  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=32.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|..|+++|+ +|+|+|+...
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~-~V~viE~~~~   40 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGH-RVVVVEQARR   40 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence            3589999999999999999999999 7999999764

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.76  E-value=2.6e-05  Score=75.92  Aligned_cols=35  Identities=31%  Similarity=0.454  Sum_probs=32.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...+|+|||+|++|+++|+.|+++|+ +|+|+|+..
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~~G~-~V~vlEk~~  305 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLRRGW-QVTLYCADE  305 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            44799999999999999999999999 899999964

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=97.76  E-value=2.2e-05  Score=70.34  Aligned_cols=37  Identities=24%  Similarity=0.404  Sum_probs=33.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHH-cC-CCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSR-MG-YDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~-~G-~~~V~v~e~~~~  180 (240)
                      ....+|+|||+|++|+++|+.|++ +| + +|+|+|+...
T Consensus        19 ~~~~dVvIIG~G~~Gl~~A~~La~~~G~~-~V~vlE~~~~   57 (405)
T 2gag_B           19 KKSYDAIIVGGGGHGLATAYFLAKNHGIT-NVAVLEKGWL   57 (405)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHHHCCC-CEEEECSSST
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHhcCCC-cEEEEeCCCC
Confidence            345689999999999999999999 99 9 8999999874

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.75  E-value=1.9e-05  Score=73.67  Aligned_cols=37  Identities=22%  Similarity=0.365  Sum_probs=33.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+|++||++|+.|+++|+ +|+|+|+...||
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~-~V~liEk~~~GG   62 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGK-RVAIAEEYRIGG   62 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCTTH
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcC-EEEEEeCCCCCC
Confidence            4689999999999999999999999 899999966555

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.75  E-value=1.9e-05  Score=72.66  Aligned_cols=81  Identities=11%  Similarity=0.167  Sum_probs=52.4

Q ss_pred             CeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCC----ccc-----cc--------cchHHHhccCceEEeCCccC-
Q psy16201        146 TKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTY----DMV-----TN--------VSPRIVKGTTSRHLYGPEQG-  205 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~----~~~-----~~--------~~~~~~~~~gv~~~~~~~vg-  205 (240)
                      |+|+|||+|++|+++|..|++.+  + +|||+|+++.    +.+     ..        -....++..+++|..+.-.+ 
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~-~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~I   81 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDL-KITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESI   81 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTC-EEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCC-eEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEE
Confidence            68999999999999999999876  6 8999999873    110     00        11234456688887654111 


Q ss_pred             ----cccCHHHHHhhcCCcEEEEeccc
Q psy16201        206 ----SFLNIELISEKTAYQWVYYSNCK  228 (240)
Q Consensus       206 ----~~i~~e~L~~~s~~d~V~~s~~~  228 (240)
                          +.+.++.-.+. .||.+++++..
T Consensus        82 d~~~~~V~~~~g~~i-~YD~LViAtG~  107 (430)
T 3hyw_A           82 DPDANTVTTQSGKKI-EYDYLVIATGP  107 (430)
T ss_dssp             ETTTTEEEETTCCEE-ECSEEEECCCC
T ss_pred             ECCCCEEEECCCCEE-ECCEEEEeCCC
Confidence                11222221111 39999999754

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.75  E-value=2.9e-05  Score=71.69  Aligned_cols=38  Identities=18%  Similarity=0.167  Sum_probs=34.1

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ....+|+|||+|++||++|+.|+++|+ +|+|+|+.+..
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~-~v~v~E~~~~~   64 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQ-RVLIVDRRPHI   64 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCC-ceEEEeccCCC
Confidence            345799999999999999999999999 79999998753

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.75  E-value=2.4e-05  Score=69.35  Aligned_cols=36  Identities=19%  Similarity=0.204  Sum_probs=32.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..++|+|||+|++|+++|..|++.|+ +|+|+|+.+.
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~   48 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNI-SCRIIESMPQ   48 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCC
Confidence            35689999999999999999999999 7999999764

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.75  E-value=2e-05  Score=69.27  Aligned_cols=39  Identities=23%  Similarity=0.497  Sum_probs=33.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ...++|+|||+|++|+++|..|++.|+ +|+|+|+...++
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~gg   50 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQL-APLVFEGTSFGG   50 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTC-CCEEECCSSCSC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCCCC
Confidence            346799999999999999999999999 799999764443

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.75  E-value=2.3e-05  Score=70.72  Aligned_cols=36  Identities=19%  Similarity=0.413  Sum_probs=32.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~~  180 (240)
                      +|||+|||+|++|+++|.+|++.|.. +|+|+|+++.
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            78999999999999999999987743 7999999874

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.75  E-value=2.9e-05  Score=74.53  Aligned_cols=35  Identities=29%  Similarity=0.533  Sum_probs=32.5

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..++|+|||+|++|+++|+.|++.|+ +|+|+|+..
T Consensus       106 ~~~DVVIVGgGpaGL~aA~~La~~G~-kV~VlEr~~  140 (549)
T 3nlc_A          106 LTERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERGK  140 (549)
T ss_dssp             CCCCCEEECCSHHHHHHHHHHHHTTC-CCEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-eEEEEEccC
Confidence            45799999999999999999999999 899999985

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.74  E-value=2.7e-05  Score=76.07  Aligned_cols=35  Identities=34%  Similarity=0.380  Sum_probs=32.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...+|+|||+|++|+++|+.|+++|+ +|+|+|+..
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~G~-~V~vlEk~~  297 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRRGA-VVTLYCADA  297 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTTTC-CEEEEESSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            35799999999999999999999999 899999975

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.74  E-value=2.8e-05  Score=72.48  Aligned_cols=39  Identities=26%  Similarity=0.513  Sum_probs=34.8

Q ss_pred             CeEEEECCChhHHHHHHHHHH---cCCCc---EEEEecCC-Cccccc
Q psy16201        146 TKIALIGCGPASLSCATFLSR---MGYDD---ITIYEKNT-YDMVTN  185 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~---~G~~~---V~v~e~~~-~~~~~~  185 (240)
                      ++|+|||+|++||++|..|++   .|+ +   |+|||+.+ .||.|.
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~-~~~~V~v~E~~~~~GG~w~   48 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGA-EIPELVCFEKQADWGGQWN   48 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTC-CCCEEEEECSSSSSCGGGS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCC-CCCcEEEEEcCCCCCCEee
Confidence            589999999999999999999   999 8   99999986 466665

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.73  E-value=2e-05  Score=68.32  Aligned_cols=37  Identities=19%  Similarity=0.372  Sum_probs=32.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .++|+|||+|++|+++|..|++.|+ +|+++|+...++
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~gg   41 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANL-QPVLITGMEKGG   41 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCSSTTG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-cEEEEccCCCCc
Confidence            4689999999999999999999999 799999764433

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=97.72  E-value=3.6e-05  Score=70.14  Aligned_cols=38  Identities=24%  Similarity=0.469  Sum_probs=33.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ...+|+|||+|++|+++|+.|+++|+++|+|+|+...+
T Consensus         5 ~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~   42 (438)
T 3dje_A            5 KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVP   42 (438)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            35689999999999999999999998339999998754

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.72  E-value=2.8e-05  Score=73.27  Aligned_cols=37  Identities=24%  Similarity=0.421  Sum_probs=33.7

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ....+|+|||+||+||++|..|++.|+ +|+|+|+.+.
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~-~v~vlE~~~~   45 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGV-EVVVLERLVE   45 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCCC
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            456789999999999999999999999 7999999864

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.72  E-value=2.8e-05  Score=73.24  Aligned_cols=37  Identities=30%  Similarity=0.423  Sum_probs=33.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ....+|+|||+||+||++|..|++.|+ +|+|+|+.+.
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~-~v~vlE~~~~   46 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGV-DVMVLEQLPQ   46 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCC
Confidence            456799999999999999999999999 7999999764

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.71  E-value=2.5e-05  Score=72.59  Aligned_cols=39  Identities=18%  Similarity=0.263  Sum_probs=34.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV  183 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~  183 (240)
                      ..++|+|||+|++|+++|..|++.|+ +|+|+|+...||.
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~-~V~liE~~~~GG~   57 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGA-RAAVVESHKLGGT   57 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCTTHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCCCCc
Confidence            35789999999999999999999999 7999998876653

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.71  E-value=2.5e-05  Score=72.45  Aligned_cols=34  Identities=24%  Similarity=0.443  Sum_probs=32.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|++|+++|..|++.|+ +|+|+|+..
T Consensus         3 ~~DVvVIGgG~aGl~aA~~la~~G~-~V~liEk~~   36 (476)
T 3lad_A            3 KFDVIVIGAGPGGYVAAIKSAQLGL-KTALIEKYK   36 (476)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTC-CEEEEECCB
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCC-EEEEEeCCC
Confidence            5689999999999999999999999 899999986

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.71  E-value=3.1e-05  Score=71.35  Aligned_cols=43  Identities=33%  Similarity=0.354  Sum_probs=35.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC-Ccccccc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT-YDMVTNV  186 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~-~~~~~~~  186 (240)
                      ..++|+|||+|++||++|..|++.|+. +|+|||+.+ .++.|..
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~   49 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   49 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecC
Confidence            357999999999999999999999972 499999985 4566654

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.70  E-value=3.2e-05  Score=69.97  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=32.1

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      .+|+|||+|++||++|+.|+++|+ +|+|+|+.+..
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~-~v~v~E~~~~~   36 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNK-KVLVIEKRNHI   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTC-CEEEECSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCC-cEEEEecCCCC
Confidence            479999999999999999999999 79999998753

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.70  E-value=3.4e-05  Score=70.21  Aligned_cols=36  Identities=19%  Similarity=0.264  Sum_probs=33.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .+|+|||+|++|+++|+.|+++|+ +|+|+|+.+..|
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~-~v~v~E~~~~~G   39 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRDHIG   39 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEEecCCcC
Confidence            689999999999999999999999 899999987643

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.70  E-value=2.3e-05  Score=72.63  Aligned_cols=37  Identities=22%  Similarity=0.403  Sum_probs=33.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+|++|+++|..|++.|+ +|+|+|+...||
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~-~V~liEk~~~GG   41 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGK-KVAIAEEFRYGG   41 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTC-CEEEEESSCTTH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCC-EEEEEeCCCCCC
Confidence            4689999999999999999999999 899999966555

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=97.70  E-value=3.7e-05  Score=64.79  Aligned_cols=33  Identities=15%  Similarity=0.388  Sum_probs=31.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ..+|+|||+|++|+++|..|+++|. +|+++|+.
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~-~v~lie~~   35 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGV-RVGLLTQS   35 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEecC
Confidence            3589999999999999999999999 79999987

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=97.69  E-value=2.2e-05  Score=72.48  Aligned_cols=35  Identities=31%  Similarity=0.430  Sum_probs=32.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|..|++.|+ +|+|+|+...
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~-~V~vlE~~~~   40 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGL-KILLVDSKPW   40 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSC-CEEEECSSCG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCC
Confidence            3589999999999999999999999 7999999864

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.69  E-value=2.4e-05  Score=69.29  Aligned_cols=33  Identities=27%  Similarity=0.447  Sum_probs=30.8

Q ss_pred             CeEEEECCChhHHHHHHHHHHcC------CCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMG------YDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G------~~~V~v~e~~~  179 (240)
                      ++|+|||+|++|+++|+.|+++|      + +|+|+|+..
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~-~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPL-DIKVYADRF   39 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSC-EEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCc-eEEEEECCC
Confidence            47999999999999999999998      8 899999986

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.69  E-value=6.7e-05  Score=69.90  Aligned_cols=74  Identities=18%  Similarity=0.393  Sum_probs=54.7

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV  222 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V  222 (240)
                      ..+++|+|||.|.+|+++|..|+++|+ +|+++|.+....  ....+.++..|+++.+|..     ..+.+..  .+|.|
T Consensus         7 ~~~k~v~viG~G~sG~s~A~~l~~~G~-~V~~~D~~~~~~--~~~~~~L~~~gi~~~~g~~-----~~~~~~~--~~d~v   76 (451)
T 3lk7_A            7 FENKKVLVLGLARSGEAAARLLAKLGA-IVTVNDGKPFDE--NPTAQSLLEEGIKVVCGSH-----PLELLDE--DFCYM   76 (451)
T ss_dssp             TTTCEEEEECCTTTHHHHHHHHHHTTC-EEEEEESSCGGG--CHHHHHHHHTTCEEEESCC-----CGGGGGS--CEEEE
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEeCCcccC--ChHHHHHHhCCCEEEECCC-----hHHhhcC--CCCEE
Confidence            357899999999999999999999999 899999875311  1123456778999988763     2222221  28999


Q ss_pred             EEec
Q psy16201        223 YYSN  226 (240)
Q Consensus       223 ~~s~  226 (240)
                      ++|.
T Consensus        77 v~sp   80 (451)
T 3lk7_A           77 IKNP   80 (451)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            9985

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.68  E-value=4.4e-05  Score=71.58  Aligned_cols=37  Identities=35%  Similarity=0.579  Sum_probs=33.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcC-CCcEEEEecCCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMG-YDDITIYEKNTYD  181 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~~~  181 (240)
                      ...+|+|||+|++||++|+.|+++| . +|+|+|+.+..
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~-~v~v~E~~~~~   45 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYK-NWHLYECNDTP   45 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCC-SEEEEESSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCC-CEEEEeCCCCC
Confidence            3579999999999999999999998 7 79999998753

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.67  E-value=3.3e-05  Score=71.82  Aligned_cols=38  Identities=18%  Similarity=0.288  Sum_probs=34.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV  183 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~  183 (240)
                      ..+|+|||+|++|+++|..|++.|+ +|+|+|+...++.
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~-~V~liE~~~~GG~   41 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGK-RVALIESKALGGT   41 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCTTHH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCC-cEEEEcCCCCCCc
Confidence            4689999999999999999999999 8999999865553

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.67  E-value=3.9e-05  Score=71.65  Aligned_cols=38  Identities=24%  Similarity=0.480  Sum_probs=32.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-cc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~  182 (240)
                      ..++|+|||+|++|+++|..|++.|+ +|+|+|+.+. ||
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G~-~V~liEk~~~~GG   62 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLGM-KVAVVEKRSTYGG   62 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCC
Confidence            35789999999999999999999999 7999998654 44

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=97.66  E-value=4.5e-05  Score=73.65  Aligned_cols=36  Identities=39%  Similarity=0.755  Sum_probs=33.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|++|+++|+.|++.|+ +|+|+|+...
T Consensus        22 ~~~DVvIVGgG~AGl~aA~~Lar~G~-~V~LiEr~~~   57 (591)
T 3i3l_A           22 TRSKVAIIGGGPAGSVAGLTLHKLGH-DVTIYERSAF   57 (591)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHcCCC-CEEEEcCCCC
Confidence            45799999999999999999999999 8999999864

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.66  E-value=4e-05  Score=66.66  Aligned_cols=35  Identities=29%  Similarity=0.485  Sum_probs=32.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|+.|++. |. +|+|+|+...
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~-~V~viEk~~~   74 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSVS   74 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSSS
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCC-eEEEEECCCC
Confidence            45899999999999999999997 99 7999999874

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=97.65  E-value=4.1e-05  Score=70.22  Aligned_cols=35  Identities=29%  Similarity=0.613  Sum_probs=32.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|+.|+++|+ +|+|+|+.+.
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~-~V~vlEk~~~   38 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKK   38 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            3589999999999999999999999 8999999874

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=97.64  E-value=4.8e-05  Score=70.34  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=32.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|++|+++|+.|++.|+ +|+|+|+.+.
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~-~V~llEk~~~   60 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGNK   60 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCC-CEEEEECCCC
Confidence            34689999999999999999999999 8999999874

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.64  E-value=3.6e-05  Score=72.54  Aligned_cols=35  Identities=29%  Similarity=0.546  Sum_probs=32.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+||++|+.|+++|+ +|+|+|+...
T Consensus         5 ~~dVlIVGaG~aGl~~A~~La~~G~-~v~viEr~~~   39 (535)
T 3ihg_A            5 EVDVLVVGAGLGGLSTAMFLARQGV-RVLVVERRPG   39 (535)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTC-CEEEECSSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            4689999999999999999999999 7999999864

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.64  E-value=3e-05  Score=70.40  Aligned_cols=59  Identities=27%  Similarity=0.329  Sum_probs=43.4

Q ss_pred             CccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        111 GPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       111 ~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      .||....+.|++.+..+....          .....+|+|||+|++||++|+.|+++  |+ +|+|+|+...
T Consensus        55 ~~i~~~~isra~~~~~~~~~~----------~~~~~DVvIVGgG~AGL~aA~~La~~~~G~-~V~LiEk~~~  115 (344)
T 3jsk_A           55 SPIRESTVSRAMTRRYFADLD----------AHAETDIVIVGAGSCGLSAAYVLSTLRPDL-RITIVEAGVA  115 (344)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHH----------HHHBCSEEEECCSHHHHHHHHHHHHHCTTS-CEEEEESSSS
T ss_pred             ccccHHHHHHHHHHhhhhhhc----------ccCcCCEEEECccHHHHHHHHHHHhcCCCC-EEEEEeCCCc
Confidence            466666666766554332110          01246899999999999999999998  99 8999999864

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.63  E-value=3.9e-05  Score=71.54  Aligned_cols=39  Identities=15%  Similarity=0.192  Sum_probs=34.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV  183 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~  183 (240)
                      ...+|+|||+|++|+++|..|++.|+ +|+|+|+...++.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~-~V~liE~~~~GG~   48 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGA-KTLLVEAKALGGT   48 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSC-CEEEEESSCTTHH
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCC-cEEEEeCCCcCCc
Confidence            35689999999999999999999999 7999999876553

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.62  E-value=3.1e-05  Score=71.70  Aligned_cols=38  Identities=13%  Similarity=0.167  Sum_probs=34.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV  183 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~  183 (240)
                      ..+|+|||+|++|+++|..|++.|+ +|+|+|+...++.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~liE~~~~GG~   41 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQ-KCALIEAKELGGT   41 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC-CEEEEESSCTTHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEcCCCCCCc
Confidence            4689999999999999999999999 8999999865553

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.62  E-value=4.2e-05  Score=71.92  Aligned_cols=35  Identities=23%  Similarity=0.504  Sum_probs=32.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|+.|+++|+ +|+|+|+...
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~-~V~liE~~~~   41 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGH-RVLLLEREAF   41 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCC-CEEEEccCCC
Confidence            4689999999999999999999999 8999999873

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=97.62  E-value=0.00012  Score=67.84  Aligned_cols=70  Identities=19%  Similarity=0.214  Sum_probs=53.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY  223 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~  223 (240)
                      .+++|+|||.|.+|+++|..|+++|+ +|+++|.......    ..+++ .|+++.+|..     ..+.+.   ++|.|+
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~-~v~~~D~~~~~~~----~~~l~-~G~~~~~g~~-----~~~~~~---~~d~vV   69 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMTPPG----LDKLP-EAVERHTGSL-----NDEWLM---AADLIV   69 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTC-CCEEEESSSSCTT----GGGSC-TTSCEEESSC-----CHHHHH---TCSEEE
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCC-EEEEEECCCCcch----hHHhh-CCCEEEECCC-----cHHHhc---cCCEEE
Confidence            46799999999999999999999999 7999998765321    13456 7888887652     344454   389999


Q ss_pred             Eecc
Q psy16201        224 YSNC  227 (240)
Q Consensus       224 ~s~~  227 (240)
                      +|..
T Consensus        70 ~s~g   73 (439)
T 2x5o_A           70 ASPG   73 (439)
T ss_dssp             ECTT
T ss_pred             eCCC
Confidence            9953

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.61  E-value=6e-05  Score=65.11  Aligned_cols=37  Identities=32%  Similarity=0.519  Sum_probs=31.8

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .+|+|||+|++|+++|..|+++|+++|+|+|+...++
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg   38 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGG   38 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTC
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCc
Confidence            4799999999999999999999982399999975443

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.61  E-value=4.2e-05  Score=71.76  Aligned_cols=37  Identities=19%  Similarity=0.306  Sum_probs=33.6

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV  183 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~  183 (240)
                      .+|+|||+|++|+++|..|++.|+ +|+|+|+...++.
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~g~-~V~liE~~~~GG~   39 (500)
T 1onf_A            3 YDLIVIGGGSGGMAAARRAARHNA-KVALVEKSRLGGT   39 (500)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSTTHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCcCcc
Confidence            589999999999999999999999 7999999876553

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.60  E-value=5.9e-05  Score=69.76  Aligned_cols=35  Identities=26%  Similarity=0.508  Sum_probs=32.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..++|+|||+|++|+++|..|++.|+ +|+|+|+.+
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~-~V~liE~~~   39 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRG   39 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTC-CEEEEECSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            45789999999999999999999999 899999985

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.59  E-value=4.8e-05  Score=69.02  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=31.6

Q ss_pred             CeEEEECCChhHHHHHHHHHH---cCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSR---MGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~---~G~~~V~v~e~~~~  180 (240)
                      ++|+|||+|++|+++|..|++   .|+ +|+|+|+++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~-~V~vie~~~~   38 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKA-DVKVINKSRF   38 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGS-EEEEEESSSE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCC-eEEEEeCCCC
Confidence            489999999999999999999   899 8999999873

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.59  E-value=0.00013  Score=66.37  Aligned_cols=77  Identities=14%  Similarity=0.026  Sum_probs=57.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc-------cccchHHHhccCceEEeCCccCcccCHHHHHhhc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV-------TNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKT  217 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~-------~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s  217 (240)
                      +++|+|||+|.+|+.+|..|++.|. +|+++++.+....       .....+.+++.|+++.++..+-..  -+.+    
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i--g~~~----  218 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGT-PASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM--GDLI----  218 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC--HHHH----
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-eEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc--CeEE----
Confidence            5799999999999999999999999 7999999875421       223345667889999998865321  1222    


Q ss_pred             CCcEEEEeccc
Q psy16201        218 AYQWVYYSNCK  228 (240)
Q Consensus       218 ~~d~V~~s~~~  228 (240)
                      ..|.|+++...
T Consensus       219 ~~D~vv~a~G~  229 (385)
T 3klj_A          219 RSSCVITAVGV  229 (385)
T ss_dssp             HHSEEEECCCE
T ss_pred             ecCeEEECcCc
Confidence            27899988643

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.58  E-value=5.6e-05  Score=70.86  Aligned_cols=37  Identities=19%  Similarity=0.384  Sum_probs=33.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+||+|+++|..|++.|+ +|+|+|+...||
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~-~V~liE~~~~GG   44 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTD-KVVLIEGGAYGT   44 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCS-CEEEEESSCSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCCCCC
Confidence            3689999999999999999999999 899999987665

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.57  E-value=5.2e-05  Score=70.25  Aligned_cols=35  Identities=20%  Similarity=0.344  Sum_probs=32.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|..|++.|+ +|+|+|+.+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~~~   36 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGM-KTACVEKRGA   36 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence            3589999999999999999999999 8999999853

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.57  E-value=4.8e-05  Score=70.56  Aligned_cols=37  Identities=22%  Similarity=0.361  Sum_probs=33.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .++|+|||+|++|+++|..|++.|+ +|+|+|+...+|
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~~~GG   41 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQALGG   41 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCTTH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-EEEEEccCCCCC
Confidence            4689999999999999999999999 899999965554

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.57  E-value=4.6e-05  Score=72.71  Aligned_cols=36  Identities=17%  Similarity=0.469  Sum_probs=33.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|++||++|+.|++.|+ +|+|+|+.+.
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~-~V~vlEk~~~  155 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGA-NVILVDKAPF  155 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            34689999999999999999999999 8999999874

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=97.57  E-value=5.7e-05  Score=72.51  Aligned_cols=35  Identities=29%  Similarity=0.347  Sum_probs=31.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+||++|..|++.|+ +|+|+|+.+.
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~-~V~VlEr~~~   83 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGV-GALVLEKLVE   83 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTC-CEEEEBSCSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEcCCCC
Confidence            4689999999999999999999999 8999999764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.57  E-value=5.7e-05  Score=66.73  Aligned_cols=35  Identities=40%  Similarity=0.634  Sum_probs=31.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|++|+++|..|++.|+.+|+|+|+..
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            35899999999999999999999982399999986

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.57  E-value=6e-05  Score=68.51  Aligned_cols=35  Identities=26%  Similarity=0.551  Sum_probs=32.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|+.|+++  |+ +|+|+|+...
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~-~V~vlE~~~~   72 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGR-SLLLVEEGGL   72 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSCS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCC-eEEEEeCCCC
Confidence            36899999999999999999999  99 7999999753

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.56  E-value=6.4e-05  Score=71.04  Aligned_cols=35  Identities=29%  Similarity=0.441  Sum_probs=32.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHH---cCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSR---MGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~---~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|+.|++   .|+ +|+|+|+...
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~~   42 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQA-NITLIESAAI   42 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSC-EEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCC-EEEEECCCCC
Confidence            4689999999999999999999   999 8999999763

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.56  E-value=6.3e-05  Score=71.54  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=32.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+||++|..|++.|+ +|+|+|+.+.
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~-~V~vlEr~~~   60 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQV-GHLVVEQTDG   60 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            3589999999999999999999999 7999999864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.56  E-value=4.2e-05  Score=66.73  Aligned_cols=32  Identities=25%  Similarity=0.606  Sum_probs=30.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEK  177 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~  177 (240)
                      .++|+|||+|++|+++|+.|++.|+ +|+|+|+
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~lie~   39 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAEL-KPLLFEG   39 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CCEEECC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-eEEEEec
Confidence            4689999999999999999999999 7999998

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.53  E-value=5.4e-05  Score=70.25  Aligned_cols=35  Identities=14%  Similarity=0.230  Sum_probs=30.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      .++|+|||+|++||++|..|+++  |+ +|+|||+.+.
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~-~Vtvie~~~~   39 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEA-HVTMIDQASR   39 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTS-EEEEECCC--
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCC-CEEEEECCCc
Confidence            36899999999999999999998  89 8999999875

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.53  E-value=5.9e-05  Score=70.05  Aligned_cols=37  Identities=19%  Similarity=0.332  Sum_probs=33.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .++|+|||+|++|+++|..|++.|+ +|+|+|+...|+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~-~V~lie~~~~GG   42 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGL-KVLAVEAGEVGG   42 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCTTH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCCCCC
Confidence            4689999999999999999999999 899999987554

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.53  E-value=7.5e-05  Score=70.23  Aligned_cols=35  Identities=20%  Similarity=0.412  Sum_probs=32.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++||++|+.|++.|+ +|+|+||...
T Consensus        41 ~~DVvVVGaG~AGl~AA~~aa~~G~-~V~vlEk~~~   75 (510)
T 4at0_A           41 EADVVVAGYGIAGVAASIEAARAGA-DVLVLERTSG   75 (510)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            4589999999999999999999999 7999999875

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.52  E-value=6.9e-05  Score=69.16  Aligned_cols=37  Identities=27%  Similarity=0.471  Sum_probs=33.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+|++|+++|..|++.|+ +|+|+|+...++
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~~~gG   39 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGNLGG   39 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCTTH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEECCCCCC
Confidence            3589999999999999999999999 899999985443

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.52  E-value=6.5e-05  Score=69.71  Aligned_cols=38  Identities=18%  Similarity=0.283  Sum_probs=33.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC-Cccc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT-YDMV  183 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~-~~~~  183 (240)
                      ..+|+|||+|++|+++|..|++.|+ +|+++|+.+ .||.
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~-~V~liEk~~~~GG~   42 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKY-NVLMADPKGELGGN   42 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECTTSSSSHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCC-eEEEEECCCCCCCc
Confidence            3589999999999999999999999 899999665 4543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.52  E-value=9.8e-05  Score=68.10  Aligned_cols=38  Identities=16%  Similarity=0.274  Sum_probs=34.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ...+|+|||+|++|+++|..|++.|+ +|+|+|+++..|
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~-~v~~~e~~~~~g   42 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGK-KVLHMDRNPYYG   42 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCcc
Confidence            35689999999999999999999999 799999987643

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.52  E-value=6.9e-05  Score=70.67  Aligned_cols=35  Identities=29%  Similarity=0.353  Sum_probs=32.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHH------------cCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSR------------MGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~------------~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|..|++            .|+ +|+|+|+...
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~-~V~liE~~~~   53 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKL-NITLIESPDV   53 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSC-EEEEEECSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCC-eEEEEeCCCC
Confidence            4689999999999999999999            899 8999998764

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.51  E-value=6.9e-05  Score=69.35  Aligned_cols=36  Identities=19%  Similarity=0.404  Sum_probs=32.6

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .+|+|||+|++|+++|..|++.|+ +|+|+|+...++
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~~G~-~V~liE~~~~gG   39 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQLGL-STAIVEPKYWGG   39 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCTTH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCCC
Confidence            589999999999999999999999 899999985443

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.51  E-value=7.3e-05  Score=70.02  Aligned_cols=31  Identities=13%  Similarity=0.263  Sum_probs=29.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHH-cCCCcEEEEe
Q psy16201        145 DTKIALIGCGPASLSCATFLSR-MGYDDITIYE  176 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~-~G~~~V~v~e  176 (240)
                      ..+|+|||+|++|+++|+.|++ .|+ +|+|+|
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~-~V~liE   34 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKK-RVAVID   34 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCC-CEEEEE
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCC-EEEEEe
Confidence            4689999999999999999999 999 799999

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.51  E-value=5.2e-05  Score=70.89  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=29.8

Q ss_pred             CeEEEECCChhHHHHHHHHHH---cCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSR---MGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~---~G~~~V~v~e~~~~  180 (240)
                      .+|+|||+|++|+++|+.|++   .|+ +|+|+|+...
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~-~V~lvE~~~~   39 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRI-DVTLVESGNV   39 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGS-EEEEEEC---
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCC-EEEEEecCCC
Confidence            589999999999999999999   999 8999999763

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.51  E-value=7.5e-05  Score=71.78  Aligned_cols=35  Identities=31%  Similarity=0.599  Sum_probs=32.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc------CCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM------GYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~------G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++||++|..|++.      |+ +|+|+||...
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~-~V~vlEk~~~   75 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAAH   75 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCC-cEEEEeCCCC
Confidence            46899999999999999999999      99 7999999864

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.50  E-value=8.9e-05  Score=70.43  Aligned_cols=35  Identities=29%  Similarity=0.416  Sum_probs=32.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHH---cCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSR---MGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~---~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|..|++   .|+ +|+|+|+...
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~~   62 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTA-DITLLQAPDI   62 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSS-EEEEEECCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCC-cEEEEeCCCC
Confidence            5689999999999999999999   999 8999999753

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.49  E-value=7.4e-05  Score=68.98  Aligned_cols=33  Identities=24%  Similarity=0.498  Sum_probs=31.1

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||+|++|+++|..|++.|+ +|+|+|+.+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~~   34 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGM-KVGVVEKEK   34 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CCEEEECCChhHHHHHHHHHHCCC-eEEEEeCCC
Confidence            479999999999999999999999 899999985

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.48  E-value=7.5e-05  Score=69.30  Aligned_cols=34  Identities=29%  Similarity=0.585  Sum_probs=32.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|++|+++|..|++.|+ +|+|+|+.+
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~liE~~~   39 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGF-KTVCIEKNE   39 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCC
Confidence            4689999999999999999999999 899999985

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.47  E-value=0.00017  Score=68.23  Aligned_cols=34  Identities=21%  Similarity=0.457  Sum_probs=31.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ...+|+|||+||+|+++|.+|+++|+ +|+++|+.
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~-~v~lie~~  244 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGI-RTGLMGER  244 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCC-eEEEEECC
Confidence            35689999999999999999999999 79999974

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.46  E-value=0.0003  Score=62.74  Aligned_cols=70  Identities=14%  Similarity=0.181  Sum_probs=52.4

Q ss_pred             CCeEEEECCChhHHH-HHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201        145 DTKIALIGCGPASLS-CATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY  223 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~-~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~  223 (240)
                      .++|.|||.|.+|++ +|..|+++|+ +|+++|+.....    ..+.++..|+.+.+|..      .+.+.. ..+|.|+
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~-~V~~~D~~~~~~----~~~~L~~~gi~v~~g~~------~~~l~~-~~~d~vV   71 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGF-EVSGCDAKMYPP----MSTQLEALGIDVYEGFD------AAQLDE-FKADVYV   71 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTC-EEEEEESSCCTT----HHHHHHHTTCEEEESCC------GGGGGS-CCCSEEE
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCC-EEEEEcCCCCcH----HHHHHHhCCCEEECCCC------HHHcCC-CCCCEEE
Confidence            478999999999997 7889999999 899999876532    23456778999887642      233320 1389999


Q ss_pred             Eec
Q psy16201        224 YSN  226 (240)
Q Consensus       224 ~s~  226 (240)
                      +|.
T Consensus        72 ~Sp   74 (326)
T 3eag_A           72 IGN   74 (326)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            984

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.45  E-value=9.9e-05  Score=70.00  Aligned_cols=36  Identities=17%  Similarity=0.318  Sum_probs=32.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|++|+++|..|++.|+ +|+|+|+.+.
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~v~iiE~~~~   50 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGR-SVHVIETAGD   50 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            35689999999999999999999999 8999999763

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.45  E-value=0.0001  Score=69.12  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=32.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|+.|+++|+ +|+|+|+.+.
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~llE~~~~   37 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGRGL-SVLMLEAQDL   37 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSST
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCC-CEEEEECCCC
Confidence            3589999999999999999999999 7999999763

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.45  E-value=7.3e-05  Score=69.97  Aligned_cols=35  Identities=23%  Similarity=0.411  Sum_probs=32.2

Q ss_pred             CeEEEECCChhHHHHHHHHHHc---CCCcEEEEecCCCc
Q psy16201        146 TKIALIGCGPASLSCATFLSRM---GYDDITIYEKNTYD  181 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~---G~~~V~v~e~~~~~  181 (240)
                      .+|+|||+|++|+++|+.|++.   |+ +|+|+|+...|
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~-~V~liE~~~~G   40 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETT-QVTVIDCDGIG   40 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTE-EEEEEESSCTT
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcC-EEEEEeCCCcC
Confidence            5899999999999999999999   99 89999998643

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=97.45  E-value=8.4e-05  Score=67.99  Aligned_cols=32  Identities=16%  Similarity=0.314  Sum_probs=30.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC-CCcEEEEec
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG-YDDITIYEK  177 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~  177 (240)
                      ..+|+|||+|++|+++|+.|+++| + +|+|+|+
T Consensus        23 ~~dVvIIGgGiaGls~A~~La~~G~~-~V~vlE~   55 (448)
T 3axb_A           23 RFDYVVVGAGVVGLAAAYYLKVWSGG-SVLVVDA   55 (448)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCS-CEEEEES
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCC-cEEEEcc
Confidence            468999999999999999999999 9 8999999

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.44  E-value=0.00012  Score=67.93  Aligned_cols=34  Identities=26%  Similarity=0.513  Sum_probs=31.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|++|+++|..|++.|+ +|+|+|+.+
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~   38 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGF-NTACVEKRG   38 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            3589999999999999999999999 899999954

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.44  E-value=0.0001  Score=67.88  Aligned_cols=35  Identities=29%  Similarity=0.632  Sum_probs=32.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      .++|+|||+|++|+++|..|++.  |+ +|+|+|+.+.
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~-~V~vie~~~~   39 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEW-DVKVFEATEW   39 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTS-EEEEECSSSC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCC-CEEEEECCCc
Confidence            46999999999999999999998  78 8999999874

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.44  E-value=8.3e-05  Score=68.33  Aligned_cols=35  Identities=17%  Similarity=0.320  Sum_probs=32.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC-----CCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG-----YDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G-----~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++||++|..|++.|     + +|+|+|+.+.
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~-~v~liE~~~~   69 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGAL-EVLFLDKQGD   69 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCC-CEEEEESCSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcc-cEEEEecCCC
Confidence            358999999999999999999999     9 7999999874

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.44  E-value=7.2e-05  Score=70.24  Aligned_cols=31  Identities=16%  Similarity=0.350  Sum_probs=29.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHH-cCCCcEEEEe
Q psy16201        145 DTKIALIGCGPASLSCATFLSR-MGYDDITIYE  176 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~-~G~~~V~v~e  176 (240)
                      ..+|+|||+|++|+++|..|++ .|+ +|+|+|
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~-~V~liE   38 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGK-RVAVVD   38 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCC-CEEEEE
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCC-eEEEEe
Confidence            5689999999999999999999 999 899999

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.44  E-value=0.00013  Score=71.36  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=32.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHH-----cCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSR-----MGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~-----~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+||++|..|++     .|+ +|+|+|+.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi-~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCC-CEEEEeCCCC
Confidence            4589999999999999999999     999 8999998763

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.44  E-value=9e-05  Score=71.86  Aligned_cols=35  Identities=29%  Similarity=0.510  Sum_probs=32.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHH-cCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSR-MGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~-~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+||++|..|++ .|+ +|+|+|+.+.
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~G~-~V~viEr~~~   67 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFPDI-RTCIVEQKEG   67 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCTTS-CEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            4589999999999999999999 999 8999999864

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.43  E-value=9.6e-05  Score=63.76  Aligned_cols=32  Identities=22%  Similarity=0.489  Sum_probs=29.7

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      .+|+|||+|++|+++|..|++.|+ +|+|+|+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~-~v~li~~~   33 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGI-RTGLMGER   33 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            479999999999999999999999 79999864

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.41  E-value=0.00018  Score=64.80  Aligned_cols=83  Identities=16%  Similarity=0.142  Sum_probs=52.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc------------------cccchHHHhccCceEEeCCccC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV------------------TNVSPRIVKGTTSRHLYGPEQG  205 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~------------------~~~~~~~~~~~gv~~~~~~~vg  205 (240)
                      .+.+|+|||+|++|+++|..|++.|  +|+|+|+.+....                  .......++..+++++++..+-
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g--~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~   84 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY--EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAK   84 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS--EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC--CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEE
Confidence            4679999999999999999999999  5999999874210                  0011234456788888775431


Q ss_pred             c-c---cCH-HHHHhhcCCcEEEEecccc
Q psy16201        206 S-F---LNI-ELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       206 ~-~---i~~-e~L~~~s~~d~V~~s~~~~  229 (240)
                      . +   ..+ +.-.. -.||.+++++...
T Consensus        85 ~id~~~~~V~~~g~~-~~~d~lViATGs~  112 (367)
T 1xhc_A           85 LIDRGRKVVITEKGE-VPYDTLVLATGAR  112 (367)
T ss_dssp             EEETTTTEEEESSCE-EECSEEEECCCEE
T ss_pred             EEECCCCEEEECCcE-EECCEEEECCCCC
Confidence            1 1   001 00001 1389999997643

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.40  E-value=0.00013  Score=68.83  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ...+|+|||+||+|+++|..|++.|+ +|+|+|+.
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~-~V~liEk~   64 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGK-KVMVLDFV   64 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTC-CEEEECCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEecc
Confidence            45799999999999999999999999 79999985

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.39  E-value=0.001  Score=51.58  Aligned_cols=78  Identities=13%  Similarity=0.113  Sum_probs=53.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHh--hcCCc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISE--KTAYQ  220 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~--~s~~d  220 (240)
                      ....+|+|+|.|..|...|..|.+.|+ +|+++|++..-      .+.++..|+.+..+..    -..+.|.+  ....|
T Consensus         5 ~~~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~------~~~~~~~g~~~i~gd~----~~~~~l~~a~i~~ad   73 (140)
T 3fwz_A            5 DICNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTR------VDELRERGVRAVLGNA----ANEEIMQLAHLECAK   73 (140)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHH------HHHHHHTTCEEEESCT----TSHHHHHHTTGGGCS
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHH------HHHHHHcCCCEEECCC----CCHHHHHhcCcccCC
Confidence            446789999999999999999999999 79999987531      1223446777666542    23333332  12478


Q ss_pred             EEEEecccchh
Q psy16201        221 WVYYSNCKVLS  231 (240)
Q Consensus       221 ~V~~s~~~~~~  231 (240)
                      +|+.+......
T Consensus        74 ~vi~~~~~~~~   84 (140)
T 3fwz_A           74 WLILTIPNGYE   84 (140)
T ss_dssp             EEEECCSCHHH
T ss_pred             EEEEECCChHH
Confidence            88888665443

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.39  E-value=0.00011  Score=69.50  Aligned_cols=36  Identities=14%  Similarity=0.355  Sum_probs=33.1

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...++|+|||+|++|+++|..|.+.++ +|+|+|+++
T Consensus        40 ~~KprVVIIGgG~AGl~~A~~L~~~~~-~VtLId~~~   75 (502)
T 4g6h_A           40 SDKPNVLILGSGWGAISFLKHIDTKKY-NVSIISPRS   75 (502)
T ss_dssp             CSSCEEEEECSSHHHHHHHHHSCTTTC-EEEEEESSS
T ss_pred             CCCCCEEEECCcHHHHHHHHHhhhCCC-cEEEECCCC
Confidence            456799999999999999999999999 899999986

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.36  E-value=0.00017  Score=68.90  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=32.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|++|+++|..|++.|+ +|+|+|+++.
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~-~v~iiE~~~~   43 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGM-KVLGIEAGED   43 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            35689999999999999999999999 7999999853

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.35  E-value=0.00016  Score=69.18  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=32.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|+.|+++|+ +|+|+|+.+.
T Consensus        18 ~~DVvVIGgGi~Gl~~A~~La~~G~-~V~LlEk~d~   52 (561)
T 3da1_A           18 QLDLLVIGGGITGAGIALDAQVRGI-QTGLVEMNDF   52 (561)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTC-CEEEEESSST
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-cEEEEECCCC
Confidence            4699999999999999999999999 8999999864

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.35  E-value=0.00014  Score=69.56  Aligned_cols=35  Identities=17%  Similarity=0.366  Sum_probs=32.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...+|+|||+|++|+++|..|++.|+ +|+|+|+.+
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~v~iiE~~~   54 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGL-TVRAFEAAS   54 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            34689999999999999999999999 899999965

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.34  E-value=0.00013  Score=66.95  Aligned_cols=83  Identities=11%  Similarity=0.210  Sum_probs=53.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHH---cCCCcEEEEecCCCcc-----------------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSR---MGYDDITIYEKNTYDM-----------------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~---~G~~~V~v~e~~~~~~-----------------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      -++|+|||+|++|+++|..|++   .|+ +|+|+|+.+.-.                 +.....+.++..++++..+.-.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~-~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v~   82 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGH-EVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAE   82 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGS-EEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcC-EEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEEE
Confidence            3689999999999999999999   899 899999987421                 0011234455678887654211


Q ss_pred             C-----cccCHHHHHhhcCCcEEEEecccc
Q psy16201        205 G-----SFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       205 g-----~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      +     ..+.++.-.. -.||.+++++...
T Consensus        83 ~id~~~~~V~~~~g~~-i~~d~lviAtG~~  111 (437)
T 3sx6_A           83 QIDAEAQNITLADGNT-VHYDYLMIATGPK  111 (437)
T ss_dssp             EEETTTTEEEETTSCE-EECSEEEECCCCE
T ss_pred             EEEcCCCEEEECCCCE-EECCEEEECCCCC
Confidence            1     1122221111 1489999997543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.34  E-value=0.00019  Score=66.91  Aligned_cols=35  Identities=23%  Similarity=0.418  Sum_probs=31.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|..|++.|+ +|+|+|+.+.
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~-~V~liE~~~~   40 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGL-KVAIVERYKT   40 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCC
Confidence            4689999999999999999999999 7999999543

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.33  E-value=0.00015  Score=67.43  Aligned_cols=33  Identities=27%  Similarity=0.376  Sum_probs=30.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEK  177 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~  177 (240)
                      ...+|+|||+|++|+++|..|++.|+ +|+|+|+
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~-~V~liEk   40 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGA-RVACLDF   40 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-EEEEEEe
Confidence            45799999999999999999999999 7999994

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.33  E-value=0.00014  Score=67.79  Aligned_cols=33  Identities=21%  Similarity=0.487  Sum_probs=30.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEK  177 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~  177 (240)
                      ...+|+|||+|++|+++|..|++.|+ +|+|+|+
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~-~V~liEk   37 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGK-KVAVADY   37 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC-eEEEEEe
Confidence            35689999999999999999999999 8999997

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.31  E-value=0.0002  Score=65.95  Aligned_cols=34  Identities=21%  Similarity=0.404  Sum_probs=31.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      ++|+|||+|++|+++|..|++.  |+ +|+|+|+.+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~-~V~lie~~~~   36 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDA-EIQWYEKGDF   36 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTS-EEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCC-eEEEEECCCc
Confidence            4799999999999999999998  89 8999999874

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.30  E-value=0.0002  Score=68.64  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=32.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|+.|+++|+ +|+|+|+.+.
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~-~V~LlE~~~~   66 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGI-KTGLIEMQDF   66 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSST
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            4589999999999999999999999 7999999763

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.30  E-value=0.00018  Score=66.23  Aligned_cols=34  Identities=26%  Similarity=0.350  Sum_probs=31.4

Q ss_pred             CeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      ++|+|||+|++|+++|..|++.  |+ +|+|+|+.+.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~V~lie~~~~   36 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDA-DVTAYEMNDN   36 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTC-EEEEEESSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCC-cEEEEECCCC
Confidence            4799999999999999999998  99 8999999874

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.30  E-value=0.00021  Score=66.81  Aligned_cols=32  Identities=38%  Similarity=0.513  Sum_probs=30.1

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||+|++||++|+.|++.|+ +|+|+||..
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~-~V~viek~~   32 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGK-KVTLISKRI   32 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CEEEECSST
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            58999999999999999999999 899999983

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.29  E-value=0.0002  Score=68.23  Aligned_cols=35  Identities=17%  Similarity=0.283  Sum_probs=32.0

Q ss_pred             CCeEEEECCChhHHHHHHHHH-HcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLS-RMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~-~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|..|+ +.|+ +|+|+|+.+.
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~-~v~viE~~~~   43 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGL-TTVGFDKADG   43 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-CEEEEESSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCC-CEEEEECCCC
Confidence            468999999999999999999 8999 8999999753

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.29  E-value=0.00023  Score=65.75  Aligned_cols=37  Identities=27%  Similarity=0.428  Sum_probs=32.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ..+|+|||+|++||++|+.|++.|+.+|+|+|+.+..
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~   40 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI   40 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence            5689999999999999999999997249999998753

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.28  E-value=0.00022  Score=66.41  Aligned_cols=33  Identities=24%  Similarity=0.480  Sum_probs=31.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|+|||+|++|+.+|+.|+++|+ +|+++|++.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~-~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGV-PVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCC-cEEEEeccC
Confidence            479999999999999999999999 899999865

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.27  E-value=0.0001  Score=72.90  Aligned_cols=37  Identities=27%  Similarity=0.486  Sum_probs=33.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcC--------CCcEEEEecCC-Cc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMG--------YDDITIYEKNT-YD  181 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G--------~~~V~v~e~~~-~~  181 (240)
                      ..++|+|||+|++||++|+.|.++|        + +|+|||+.+ ..
T Consensus        55 ~~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~-~V~v~E~~~~r~  100 (721)
T 3ayj_A           55 GNYRIAIVGGGAGGIAALYELGRLAATLPAGSGI-DVQIYEADPDSF  100 (721)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEE-EEEEECCCTTBG
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCcccccCCCc-eEEEEeccCccc
Confidence            3578999999999999999999999        9 899999987 54

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.27  E-value=0.00024  Score=64.87  Aligned_cols=85  Identities=16%  Similarity=0.199  Sum_probs=53.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCCCcc-----ccc-cc----hH-----HHhccCceEEeCCccCc-
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTYDM-----VTN-VS----PR-----IVKGTTSRHLYGPEQGS-  206 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~~~~-----~~~-~~----~~-----~~~~~gv~~~~~~~vg~-  206 (240)
                      ..++|+|||+|++|+++|..|++.|++ +|+++|+.+...     ... +.    +.     .++..+++++++..+-. 
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   85 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSF   85 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEE
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEE
Confidence            457899999999999999999999983 499999987421     111 10    00     23456788887764321 


Q ss_pred             -----ccCHHHHHhhcCCcEEEEecccc
Q psy16201        207 -----FLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       207 -----~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                           .+.++.-.. -.||.+++++...
T Consensus        86 ~~~~~~v~~~~g~~-~~~d~lviAtG~~  112 (408)
T 2gqw_A           86 DPQAHTVALSDGRT-LPYGTLVLATGAA  112 (408)
T ss_dssp             ETTTTEEEETTSCE-EECSEEEECCCEE
T ss_pred             ECCCCEEEECCCCE-EECCEEEECCCCC
Confidence                 111111001 1389999887543

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.27  E-value=0.0002  Score=66.15  Aligned_cols=34  Identities=32%  Similarity=0.631  Sum_probs=30.4

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCC-cEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~~  180 (240)
                      ||+|||+|++|+++|..|++.|.+ +|+|+|+.+.
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~   36 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRD   36 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCC
Confidence            799999999999999999999853 6999998763

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.26  E-value=0.00023  Score=68.50  Aligned_cols=35  Identities=23%  Similarity=0.295  Sum_probs=32.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++||++|+.|++.|+ +|+|+||...
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~G~-~V~vlEK~~~   41 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQSGQ-TCALLSKVFP   41 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            4589999999999999999999999 8999999864

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.25  E-value=0.00045  Score=63.51  Aligned_cols=60  Identities=15%  Similarity=0.214  Sum_probs=47.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc-------cccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV-------TNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~-------~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|++|+.+|..|++.|. +|+++|+.+....       .....+.+++.|++++++..+
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v  214 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETV  214 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEE
Confidence            46799999999999999999999999 8999998875321       122334557789999887644

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.21  E-value=0.00036  Score=64.69  Aligned_cols=59  Identities=17%  Similarity=0.245  Sum_probs=46.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|++|+.+|..|++.|. +|+++|+.+...      +.....+.+++.|++++++..+
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v  233 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGA-EVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKA  233 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEE
Confidence            5799999999999999999999999 899999887532      1222345567789998887543

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.20  E-value=0.00031  Score=65.05  Aligned_cols=60  Identities=13%  Similarity=0.173  Sum_probs=46.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|++|+.+|..|++.|. +|+++++.+...      +.....+.+++.|++++++..+
T Consensus       170 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v  235 (458)
T 1lvl_A          170 LPQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSV  235 (458)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEE
T ss_pred             cCCeEEEECcCHHHHHHHHHHHHCCC-eEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECCEE
Confidence            35799999999999999999999999 899999987532      1122334556789998887644

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.20  E-value=0.00029  Score=63.47  Aligned_cols=35  Identities=14%  Similarity=0.268  Sum_probs=31.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      .++|+|||+|++|+++|..|++.|++ +|+++|++.
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            46899999999999999999999942 699999875

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.20  E-value=0.00029  Score=68.43  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=32.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++||++|+.|++.|+ +|+|+||...
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~G~-~V~vlEK~~~   52 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEAGF-NTACVTKLFP   52 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCG
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCC-cEEEEeccCC
Confidence            3589999999999999999999999 8999999763

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.19  E-value=0.00058  Score=62.23  Aligned_cols=83  Identities=13%  Similarity=0.147  Sum_probs=57.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCccCcc----cCHHH
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQGSF----LNIEL  212 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~vg~~----i~~e~  212 (240)
                      .+++|+|||+|.+|+.+|..|++.|. +|+++++.+...       +.....+.+++.|++++++..+-..    +.++.
T Consensus       144 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~v~~~~  222 (408)
T 2gqw_A          144 PQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDD  222 (408)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEETTEEEETT
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCC-EEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEECCEEEECC
Confidence            36899999999999999999999999 899999987532       1122345567889999988654221    11110


Q ss_pred             HHhhcCCcEEEEeccc
Q psy16201        213 ISEKTAYQWVYYSNCK  228 (240)
Q Consensus       213 L~~~s~~d~V~~s~~~  228 (240)
                      =.. -.+|.|+++...
T Consensus       223 g~~-i~~D~vi~a~G~  237 (408)
T 2gqw_A          223 GTR-IAADMVVVGIGV  237 (408)
T ss_dssp             SCE-EECSEEEECSCE
T ss_pred             CCE-EEcCEEEECcCC
Confidence            000 137888888543

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.18  E-value=0.0004  Score=64.37  Aligned_cols=59  Identities=19%  Similarity=0.277  Sum_probs=46.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|++|+.+|..|++.|. +|+++++.+...      +.....+.+++.|++++++..+
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v  247 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKV  247 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCC-EEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            5899999999999999999999999 899999987532      1223345567789999887543

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.18  E-value=0.00064  Score=61.17  Aligned_cols=59  Identities=22%  Similarity=0.305  Sum_probs=46.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|++|+.+|..|++.|. +|+++|+.+...       +.....+.++..|++++++..+
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v  210 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGY-QLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVL  210 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-eEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence            6799999999999999999999999 899999887532       1122334567789999887654

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.15  E-value=0.00034  Score=66.01  Aligned_cols=36  Identities=22%  Similarity=0.448  Sum_probs=33.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|++|+++|+.|++.|+ +|+++|+++.
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~-~v~~~e~~~~   54 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGK-KILVLDRNPY   54 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeccCC
Confidence            45689999999999999999999999 7999999975

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.15  E-value=0.00049  Score=63.40  Aligned_cols=60  Identities=15%  Similarity=0.181  Sum_probs=46.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|++|+.+|..|++.|. +|+++|+.+...      +.....+.+++.|++++++..+
T Consensus       169 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v  234 (455)
T 1ebd_A          169 VPKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALA  234 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            35799999999999999999999999 899999886532      1122334567789999887543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.15  E-value=0.00034  Score=65.15  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=31.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      .++|+|||+|++|+++|..|++.  |+ +|+|+|+.+.
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~-~V~lie~~~~   72 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENA-NVVTLEKGEI   72 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSSSC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCC-cEEEEECCCC
Confidence            46999999999999999999996  89 8999999874

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.15  E-value=0.00034  Score=67.86  Aligned_cols=37  Identities=22%  Similarity=0.519  Sum_probs=33.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+|++|+++|+.|++.|+ +|+|+|+....+
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~G~-~V~liE~~~~~g   82 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEIDS   82 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCC-cEEEEeccCCCC
Confidence            4689999999999999999999999 899999987543

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.15  E-value=0.00047  Score=63.51  Aligned_cols=60  Identities=17%  Similarity=0.253  Sum_probs=46.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|++|+.+|..|++.|. +|+++|+.+...      +.....+.+++.|++++++..+
T Consensus       166 ~~~~vvIiGgG~~g~e~A~~l~~~g~-~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V  231 (455)
T 2yqu_A          166 VPKRLIVVGGGVIGLELGVVWHRLGA-EVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRV  231 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-EEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEE
Confidence            35799999999999999999999999 899999886521      1222334556789999887654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.15  E-value=0.0027  Score=49.90  Aligned_cols=75  Identities=19%  Similarity=0.289  Sum_probs=48.7

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHh-ccCceEEeCCccCcccCHHHHHh--hcCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVK-GTTSRHLYGPEQGSFLNIELISE--KTAY  219 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~-~~gv~~~~~~~vg~~i~~e~L~~--~s~~  219 (240)
                      ..+.+|+|+|+|..|...|..|.+.|+ +|+++|+...-.      ..+. ..|..+..+..    .+.+.+.+  ....
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~------~~~~~~~g~~~~~~d~----~~~~~l~~~~~~~a   85 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAF------HRLNSEFSGFTVVGDA----AEFETLKECGMEKA   85 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGG------GGSCTTCCSEEEESCT----TSHHHHHTTTGGGC
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHH------HHHHhcCCCcEEEecC----CCHHHHHHcCcccC
Confidence            457799999999999999999999999 899999864321      1112 34554443321    12233322  1247


Q ss_pred             cEEEEeccc
Q psy16201        220 QWVYYSNCK  228 (240)
Q Consensus       220 d~V~~s~~~  228 (240)
                      |+|+.+...
T Consensus        86 d~Vi~~~~~   94 (155)
T 2g1u_A           86 DMVFAFTND   94 (155)
T ss_dssp             SEEEECSSC
T ss_pred             CEEEEEeCC
Confidence            888887654

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.14  E-value=0.0003  Score=66.93  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=31.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++||++|+.|++ |+ +|+|+||...
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~-~V~vlEk~~~   41 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QH-QVIVLSKGPV   41 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TS-CEEEECSSCT
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CC-cEEEEECCCC
Confidence            4689999999999999999999 99 8999999874

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.14  E-value=0.00029  Score=66.08  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=32.6

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      ...++|+|||+|++|+++|..|++.  |+ +|+|+|+.+.
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~-~V~lie~~~~   47 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGA-RVLIVSEDPE   47 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTC-EEEEEESSSS
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCC-eEEEEeCCCC
Confidence            3457899999999999999999887  78 8999999864

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.14  E-value=0.00026  Score=66.09  Aligned_cols=56  Identities=14%  Similarity=0.161  Sum_probs=40.4

Q ss_pred             CccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcC---CCcEEEEecCCC
Q psy16201        111 GPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMG---YDDITIYEKNTY  180 (240)
Q Consensus       111 ~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G---~~~V~v~e~~~~  180 (240)
                      .++.|+.+.|++.++     +    .    .....++|+|||+|++|+++|..|++.|   + +|+|+|+.+.
T Consensus        14 ~~~~~~~~~~~~~~~-----m----~----~~~m~~dvvIIGaG~aGl~aA~~l~~~g~~~~-~V~lie~~~~   72 (490)
T 2bc0_A           14 SMTGGQQMGRTLYDD-----D----D----KDRWGSKIVVVGANHAGTACIKTMLTNYGDAN-EIVVFDQNSN   72 (490)
T ss_dssp             ----CCCCSCCTTCC-----C----C----TTCCCCEEEEECCSHHHHHHHHHHHHHHGGGS-EEEEECSSSC
T ss_pred             cccchhhhccccccc-----c----c----hhccCCcEEEECCCHHHHHHHHHHHhcCCCCC-eEEEEECCCC
Confidence            577788888775421     1    1    1123579999999999999999999988   9 8999999874

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.12  E-value=0.00036  Score=68.30  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=31.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|++|+++|+.|++.|. +|+|+|+..
T Consensus        28 ~yDVIVIGgG~AGl~AAlaLAr~G~-kVlLIEk~~   61 (651)
T 3ces_A           28 PFDVIIIGGGHAGTEAAMAAARMGQ-QTLLLTHNI   61 (651)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESCG
T ss_pred             cCCEEEECChHHHHHHHHHHHhCCC-CEEEEeecc
Confidence            4689999999999999999999999 799999873

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.12  E-value=0.00033  Score=71.17  Aligned_cols=35  Identities=29%  Similarity=0.515  Sum_probs=32.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .++|+|||+||+|+++|..|++.|+ +|+|||+.+.
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~-~V~lie~~~~  162 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGA-RVMLLDERAE  162 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence            4679999999999999999999999 8999999864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.10  E-value=0.0026  Score=48.92  Aligned_cols=74  Identities=9%  Similarity=0.082  Sum_probs=49.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHh--hcCCcEE
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISE--KTAYQWV  222 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~--~s~~d~V  222 (240)
                      .++|+|+|+|..|...|..|.+.|+ +|+++|+++..      .+.+...+..+..+..    -+.+.+.+  ....|+|
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~------~~~~~~~~~~~~~gd~----~~~~~l~~~~~~~~d~v   74 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEK------IELLEDEGFDAVIADP----TDESFYRSLDLEGVSAV   74 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHH------HHHHHHTTCEEEECCT----TCHHHHHHSCCTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHH------HHHHHHCCCcEEECCC----CCHHHHHhCCcccCCEE
Confidence            4689999999999999999999999 79999976421      1223345666555431    23333332  1247888


Q ss_pred             EEecccc
Q psy16201        223 YYSNCKV  229 (240)
Q Consensus       223 ~~s~~~~  229 (240)
                      +.+....
T Consensus        75 i~~~~~~   81 (141)
T 3llv_A           75 LITGSDD   81 (141)
T ss_dssp             EECCSCH
T ss_pred             EEecCCH
Confidence            8876644

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.10  E-value=0.00022  Score=66.91  Aligned_cols=34  Identities=26%  Similarity=0.509  Sum_probs=31.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .++|+|||+|++|+++|+.|++. + +|+|+|+.+.
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~-~V~vie~~~~  141 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-L-TVALIEERGW  141 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-C-CEEEECTTSS
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-C-CEEEEeCCCC
Confidence            35899999999999999999999 8 8999999875

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.09  E-value=0.00043  Score=67.55  Aligned_cols=33  Identities=27%  Similarity=0.470  Sum_probs=31.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ..+|+|||+|++|+++|+.|++.|. +|+|+|+.
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~-kVlLIEk~   59 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGA-KTAMFVLN   59 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-CEEEEEec
Confidence            4689999999999999999999999 89999987

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.08  E-value=0.00045  Score=68.77  Aligned_cols=36  Identities=25%  Similarity=0.486  Sum_probs=32.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++|+++|+.|+++|+.+|+|+|+...
T Consensus         4 ~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~   39 (830)
T 1pj5_A            4 TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL   39 (830)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            468999999999999999999999724999999874

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.08  E-value=0.00053  Score=61.75  Aligned_cols=80  Identities=14%  Similarity=0.123  Sum_probs=55.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc-----cccchHHHhccCceEEeCCccCcc----cCHHHHHh
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV-----TNVSPRIVKGTTSRHLYGPEQGSF----LNIELISE  215 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~-----~~~~~~~~~~~gv~~~~~~~vg~~----i~~e~L~~  215 (240)
                      +++|+|||+|++|+.+|..|++.|. +|+++++.+....     .....+.+++.|+++.++..+-..    +.++. .+
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~v~~~~-g~  220 (367)
T 1xhc_A          143 SGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEEGVLTNS-GF  220 (367)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECSCCEEEECSSEEEETT-EE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCCeeccCCHHHHHHHHHHHHHCCCEEEcCCEEEEEEeeEEEECC-CE
Confidence            4799999999999999999999999 8999998875321     122335567889999888654221    11110 00


Q ss_pred             hcCCcEEEEecc
Q psy16201        216 KTAYQWVYYSNC  227 (240)
Q Consensus       216 ~s~~d~V~~s~~  227 (240)
                       -.+|.|+++..
T Consensus       221 -i~~D~vi~a~G  231 (367)
T 1xhc_A          221 -IEGKVKICAIG  231 (367)
T ss_dssp             -EECSCEEEECC
T ss_pred             -EEcCEEEECcC
Confidence             13788888754

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.07  E-value=0.00053  Score=63.81  Aligned_cols=60  Identities=18%  Similarity=0.173  Sum_probs=47.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|..|+.+|..|++.|. +|+++|+.+...      +.....+.+++.|++++++..+
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~G~-~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v  249 (482)
T 1ojt_A          184 VPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKT  249 (482)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEECCccccccCHHHHHHHHHHHHhcCCEEEECCEE
Confidence            36899999999999999999999999 899999987532      1223345567788998887644

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.07  E-value=0.00068  Score=62.58  Aligned_cols=59  Identities=8%  Similarity=0.226  Sum_probs=46.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|++|+.+|..|++.|. +|+++|+.+...      +.....+.+++.|++++++..+
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v  231 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIP  231 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC-EEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            5799999999999999999999999 899999886422      1222334567789999887644

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.07  E-value=0.00088  Score=62.50  Aligned_cols=60  Identities=13%  Similarity=0.267  Sum_probs=47.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|.+|+.+|..|++.|. +|+++++.+...       +.....+.+++.|+++.++..+
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v  259 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGK-EVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETV  259 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEETCCE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCC-eEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEEeCCEE
Confidence            46899999999999999999999999 899999887532       1122334567889999887654

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.06  E-value=0.00038  Score=68.05  Aligned_cols=35  Identities=20%  Similarity=0.177  Sum_probs=32.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|.+||++|+.|++.|+ +|+|+||...
T Consensus         5 ~~DVvVIGgG~AGL~AAl~aae~G~-~V~vlEK~~~   39 (660)
T 2bs2_A            5 YCDSLVIGGGLAGLRAAVATQQKGL-STIVLSLIPV   39 (660)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCG
T ss_pred             cccEEEECchHHHHHHHHHHHHCCC-cEEEEeccCC
Confidence            3589999999999999999999999 8999999764

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.05  E-value=0.00046  Score=66.62  Aligned_cols=33  Identities=24%  Similarity=0.368  Sum_probs=31.1

Q ss_pred             CeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMG--YDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~  179 (240)
                      .+|+|||+|++||++|+.|++.|  . +|+|+|+..
T Consensus         6 ~DVvIVG~G~AGl~aAl~la~~G~~~-~V~vlEk~~   40 (602)
T 1kf6_A            6 ADLAIVGAGGAGLRAAIAAAQANPNA-KIALISKVY   40 (602)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTC-CEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCCC-cEEEEeCCC
Confidence            58999999999999999999999  9 799999975

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.05  E-value=0.0006  Score=62.66  Aligned_cols=84  Identities=14%  Similarity=0.203  Sum_probs=54.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCCC-cc----cc-c-------------cchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY-DM----VT-N-------------VSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~~-~~----~~-~-------------~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|++|+++|..|++.|+. +|+++|+.+. +.    +. .             ...+.++..+++++++..+
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            46899999999999999999999984 5999998753 21    00 0             0123456678888887653


Q ss_pred             Cc------ccCHHHHHhhcCCcEEEEecccc
Q psy16201        205 GS------FLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       205 g~------~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      -.      .+.++.-.. -.||.+++++...
T Consensus        84 ~~i~~~~~~v~~~~g~~-~~~d~lviAtG~~  113 (431)
T 1q1r_A           84 TAINRDRQQVILSDGRA-LDYDRLVLATGGR  113 (431)
T ss_dssp             EEEETTTTEEEETTSCE-EECSEEEECCCEE
T ss_pred             EEEECCCCEEEECCCCE-EECCEEEEcCCCC
Confidence            21      122111001 1389999987543

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.05  E-value=0.00077  Score=61.40  Aligned_cols=60  Identities=17%  Similarity=0.223  Sum_probs=47.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .+++|+|||+|.+|+.+|..|++.|. +|+++++.+...       +.....+.+++.|++++++..+
T Consensus       142 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v  208 (410)
T 3ef6_A          142 SATRLLIVGGGLIGCEVATTARKLGL-SVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGV  208 (410)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            36899999999999999999999999 899999987532       1223345567789999887654

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.04  E-value=0.00047  Score=67.35  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=32.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...+|+|||+|++|+++|+.|+++|. +|+|+|+..
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~-kVlLIEk~~   54 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGL-HCLLITSDL   54 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESCG
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCC-cEEEEEecc
Confidence            35799999999999999999999999 799999873

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.02  E-value=0.00096  Score=61.52  Aligned_cols=81  Identities=12%  Similarity=0.058  Sum_probs=56.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCccCc----ccCHHHHH
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQGS----FLNIELIS  214 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~vg~----~i~~e~L~  214 (240)
                      .++|+|||+|+.|+..|..|++.|. +|+++++.+...      ......+.+++.|++++++..+-.    .+.++.=.
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~~v~~~~g~  225 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGL-HPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFKSGK  225 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETTEEEETTSC
T ss_pred             CcEEEEECCccchhhhHHHHHhcCC-cceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEecCCeeeecCCe
Confidence            5689999999999999999999999 899999887421      222344566788999998876532    11111101


Q ss_pred             hhcCCcEEEEecc
Q psy16201        215 EKTAYQWVYYSNC  227 (240)
Q Consensus       215 ~~s~~d~V~~s~~  227 (240)
                      .. ..|.|+++..
T Consensus       226 ~~-~~D~vl~a~G  237 (437)
T 4eqs_A          226 VE-HYDMIIEGVG  237 (437)
T ss_dssp             EE-ECSEEEECCC
T ss_pred             EE-eeeeEEEEec
Confidence            11 2688887753

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.00  E-value=0.00078  Score=62.21  Aligned_cols=60  Identities=20%  Similarity=0.218  Sum_probs=46.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|.+|+..|..|++.|. +|+++++.+...      +.....+.+++.|++++++..+
T Consensus       170 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v  235 (464)
T 2a8x_A          170 LPKSIIIAGAGAIGMEFGYVLKNYGV-DVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKV  235 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEECSCEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEEeCcEE
Confidence            35799999999999999999999999 899999887532      1122335567789998887643

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=96.99  E-value=0.00099  Score=61.77  Aligned_cols=59  Identities=14%  Similarity=0.206  Sum_probs=46.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|.+|+.+|..|++.|. +|+++++.+...      +.....+.+++.|++++++..+
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~-~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v  230 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGS-EVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAV  230 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            5799999999999999999999999 899999886422      1222334567789999887654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.97  E-value=0.00086  Score=62.80  Aligned_cols=59  Identities=20%  Similarity=0.303  Sum_probs=47.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|++|+..|..|++.|. +|+++++.+...      +.....+.+++.|+++.++..+
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~~v  240 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADV  240 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCE
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCC-eEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEECCEE
Confidence            6799999999999999999999999 899999977532      1223345567889999887644

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=96.96  E-value=0.0011  Score=57.96  Aligned_cols=59  Identities=25%  Similarity=0.357  Sum_probs=46.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccch-HHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSP-RIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~-~~~~~~gv~~~~~~~  203 (240)
                      .+++|+|||+|.+|+..|..|++.|. +|+++++.+......... +.++..|+++.++..
T Consensus       154 ~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~l~~~~~~~~~~~~~~~~~~~~~gV~v~~~~~  213 (335)
T 2a87_A          154 RDQDIAVIGGGDSAMEEATFLTRFAR-SVTLVHRRDEFRASKIMLDRARNNDKIRFLTNHT  213 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHHTTTCS-EEEEECSSSSCSSCTTHHHHHHHCTTEEEECSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCC-eEEEEEcCCcCCccHHHHHHHhccCCcEEEeCce
Confidence            46899999999999999999999999 899999887543233233 445678888877654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=96.96  E-value=0.0012  Score=59.88  Aligned_cols=59  Identities=17%  Similarity=0.244  Sum_probs=47.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      +++|+|||+|.+|+.+|..|++.|. +|+++++.+...       +.....+.+++.|++++++..+
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v  217 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGV-NVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAM  217 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC-eEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEE
Confidence            6799999999999999999999999 899999987532       1223345567889999887654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=96.96  E-value=0.001  Score=61.12  Aligned_cols=60  Identities=13%  Similarity=0.212  Sum_probs=46.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc-------cccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV-------TNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~-------~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .+++|+|||+|++|+.+|..|++.|. +|+++++.+....       .....+.+++.|+++.++..+
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l~~~G~-~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v  214 (431)
T 1q1r_A          148 ADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQV  214 (431)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCC-EEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEE
Confidence            46899999999999999999999999 8999998765321       112334557789998887644

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.00094  Score=62.14  Aligned_cols=60  Identities=10%  Similarity=0.108  Sum_probs=47.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|..|+..|..|++.|. +|+++++.+...      +.....+.++..|+++.++..+
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v  249 (479)
T 2hqm_A          184 QPKKVVVVGAGYIGIELAGVFHGLGS-ETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKI  249 (479)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTC-EEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEEeCCccccccCHHHHHHHHHHHHhCCeEEEeCCEE
Confidence            35799999999999999999999999 899999887522      1222334567789999887654

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=96.94  E-value=0.00065  Score=65.98  Aligned_cols=35  Identities=29%  Similarity=0.379  Sum_probs=31.8

Q ss_pred             CCeEEEECCChhHHHHHHHHH---H-cCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLS---R-MGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~---~-~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++||++|+.|+   + .|. +|+|+||...
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~-~V~vlEK~~~   60 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGL-KVTLVEKAAV   60 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTC-CEEEECSSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCC-eEEEEeCcCC
Confidence            458999999999999999999   6 899 7999999874

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.93  E-value=0.00065  Score=62.68  Aligned_cols=60  Identities=17%  Similarity=0.243  Sum_probs=46.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|++|+.+|..|++.|. +|+++++.+...      +.....+.+++.|++++++..+
T Consensus       176 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v  241 (470)
T 1dxl_A          176 IPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKV  241 (470)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEE
Confidence            35799999999999999999999999 899999987532      1222345567789998887543

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=96.93  E-value=0.0015  Score=61.47  Aligned_cols=69  Identities=17%  Similarity=0.179  Sum_probs=51.9

Q ss_pred             CCCCeEEEECCChhHHH-HHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcE
Q psy16201        143 FPDTKIALIGCGPASLS-CATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQW  221 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~-~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~  221 (240)
                      ...++|.|||.|-+|++ +|..|.++|+ +|+++|.....     ..+.++..|+.+.+|..      .+.+.   .+|.
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~-~V~~~D~~~~~-----~~~~l~~~gi~~~~g~~------~~~~~---~~d~   84 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGY-QISGSDLAPNS-----VTQHLTALGAQIYFHHR------PENVL---DASV   84 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTC-EEEEECSSCCH-----HHHHHHHTTCEEESSCC------GGGGT---TCSE
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCC-eEEEEECCCCH-----HHHHHHHCCCEEECCCC------HHHcC---CCCE
Confidence            45689999999999997 6999999999 89999976432     23456778999887642      22232   4899


Q ss_pred             EEEec
Q psy16201        222 VYYSN  226 (240)
Q Consensus       222 V~~s~  226 (240)
                      |++|.
T Consensus        85 vV~Sp   89 (494)
T 4hv4_A           85 VVVST   89 (494)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            99995

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.93  E-value=0.0038  Score=50.19  Aligned_cols=75  Identities=9%  Similarity=0.029  Sum_probs=48.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHh---hcC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISE---KTA  218 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~---~s~  218 (240)
                      ..+.+|+|+|.|..|...|..|.+. |+ +|+++|++..-      .+.+...|..+..+..    -+.+.+.+   ...
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~------~~~~~~~g~~~~~gd~----~~~~~l~~~~~~~~  105 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEA------AQQHRSEGRNVISGDA----TDPDFWERILDTGH  105 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHH------HHHHHHTTCCEEECCT----TCHHHHHTBCSCCC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHH------HHHHHHCCCCEEEcCC----CCHHHHHhccCCCC
Confidence            3467899999999999999999999 99 79999986421      1223345655544331    12232322   124


Q ss_pred             CcEEEEeccc
Q psy16201        219 YQWVYYSNCK  228 (240)
Q Consensus       219 ~d~V~~s~~~  228 (240)
                      .|+|+.+...
T Consensus       106 ad~vi~~~~~  115 (183)
T 3c85_A          106 VKLVLLAMPH  115 (183)
T ss_dssp             CCEEEECCSS
T ss_pred             CCEEEEeCCC
Confidence            6777776543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=96.92  E-value=0.001  Score=57.82  Aligned_cols=59  Identities=17%  Similarity=0.347  Sum_probs=45.5

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccch-HHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSP-RIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~-~~~~~~gv~~~~~~~  203 (240)
                      .+++|+|||+|.+|+..|..|++.|. +|+++++.+......... +.++..|+++.++..
T Consensus       158 ~~~~v~VvG~G~~g~e~A~~l~~~g~-~V~lv~~~~~~~~~~~~~~~~~~~~gv~i~~~~~  217 (333)
T 1vdc_A          158 RNKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSS  217 (333)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSS-EEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEE
T ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC-eEEEEecCCcCCccHHHHHHHHhCCCeeEecCCc
Confidence            46899999999999999999999999 899999887543222222 344677888877653

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.91  E-value=0.00074  Score=66.07  Aligned_cols=35  Identities=17%  Similarity=0.239  Sum_probs=31.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc------CCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM------GYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~------G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++||++|+.|++.      |. +|+|+||...
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~-~V~vleK~~~   62 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEA-KILLVDKASL   62 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTC-CEEEECSSCT
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCC-cEEEEEecCC
Confidence            35899999999999999999998      99 7999999753

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.91  E-value=0.0028  Score=53.97  Aligned_cols=75  Identities=11%  Similarity=0.038  Sum_probs=52.6

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcE
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQW  221 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~  221 (240)
                      .-.+++|+|||+|..|...+..|.+.|. +|+|++......    +.......++.+..+.     ...++|.   ++|.
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~----l~~l~~~~~i~~i~~~-----~~~~dL~---~adL   94 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSAE----INEWEAKGQLRVKRKK-----VGEEDLL---NVFF   94 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCHH----HHHHHHTTSCEEECSC-----CCGGGSS---SCSE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCHH----HHHHHHcCCcEEEECC-----CCHhHhC---CCCE
Confidence            3568999999999999999999999999 799998754332    1222233455655433     3444443   4899


Q ss_pred             EEEecccc
Q psy16201        222 VYYSNCKV  229 (240)
Q Consensus       222 V~~s~~~~  229 (240)
                      ||.++.+.
T Consensus        95 VIaAT~d~  102 (223)
T 3dfz_A           95 IVVATNDQ  102 (223)
T ss_dssp             EEECCCCT
T ss_pred             EEECCCCH
Confidence            99887544

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.90  E-value=0.0011  Score=57.09  Aligned_cols=59  Identities=15%  Similarity=0.196  Sum_probs=44.5

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhc-cCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKG-TTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~-~gv~~~~~~~  203 (240)
                      .+++|+|||+|++|+.+|..|++.|. +|+++++.+.........+.+.. .|+++.++..
T Consensus       143 ~~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~  202 (310)
T 1fl2_A          143 KGKRVAVIGGGNSGVEAAIDLAGIVE-HVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQ  202 (310)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBS-EEEEECSSSSCCSCHHHHHHHHTCTTEEEESSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCC-EEEEEEeCcccCccHHHHHHHhhCCCeEEecCCc
Confidence            46899999999999999999999999 89999988754322222333444 5888877643

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=96.87  E-value=0.00092  Score=62.20  Aligned_cols=60  Identities=15%  Similarity=0.170  Sum_probs=46.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|++|+.+|..|++.|. +|+++++.+...      +.....+.++..|+++.++..+
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v  250 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGK-KVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENV  250 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTC-EEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEE
Confidence            46899999999999999999999999 899999876422      1122334567789998887654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=96.86  E-value=0.0012  Score=61.05  Aligned_cols=59  Identities=19%  Similarity=0.193  Sum_probs=46.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc-------cccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV-------TNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~-------~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|++|+.+|..|++.|. +|+++++.+....       .....+.+++.|++++++..+
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v  243 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGA-DVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKV  243 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCC-EEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceE
Confidence            5799999999999999999999999 8999998875321       112334567789998887543

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=96.85  E-value=0.0015  Score=59.23  Aligned_cols=60  Identities=20%  Similarity=0.277  Sum_probs=47.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .+++|+|||+|.+|+.+|..|.+.|. +|+++++.+...       +.....+.+++.|++++++..+
T Consensus       141 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v  207 (404)
T 3fg2_P          141 DKKHVVVIGAGFIGLEFAATARAKGL-EVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRA  207 (404)
T ss_dssp             GCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEE
Confidence            36799999999999999999999999 899999887532       1222334567889999887654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=96.84  E-value=0.0017  Score=61.20  Aligned_cols=59  Identities=15%  Similarity=0.206  Sum_probs=46.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|.+|+.+|..|++.|. +|+++++.+...      +.....+.++..|+++.++..+
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v  215 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGI-KTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTAL  215 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC-cEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeE
Confidence            5799999999999999999999999 899999887532      1122334567889999887654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=96.83  E-value=0.0015  Score=60.07  Aligned_cols=59  Identities=15%  Similarity=0.268  Sum_probs=46.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|.+|+..|..|++.|. +|+++++.+...       +.....+.+++.|++++++..+
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v  214 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNY-NVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKV  214 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCE
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCC-EEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCee
Confidence            5799999999999999999999999 899999876432       1122345567889999888754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=96.82  E-value=0.0015  Score=60.27  Aligned_cols=60  Identities=20%  Similarity=0.272  Sum_probs=47.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHH-hccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIV-KGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~-~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|.+|+..|..|++.|. +|+++++.+...      +.....+.+ +..|++++++..+
T Consensus       173 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v  239 (468)
T 2qae_A          173 VPKTMVVIGGGVIGLELGSVWARLGA-EVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKV  239 (468)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhCC-EEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEE
Confidence            35799999999999999999999999 899999887532      122334566 7889999887644

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=96.82  E-value=0.0015  Score=60.37  Aligned_cols=60  Identities=18%  Similarity=0.285  Sum_probs=46.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-----ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-----VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-----~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|++|+.+|..|++.|. +|+++++.+...     +.....+.+++.|++++++..+
T Consensus       175 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~Gv~i~~~~~v  239 (467)
T 1zk7_A          175 IPERLAVIGSSVVALELAQAFARLGS-KVTVLARNTLFFREDPAIGEAVTAAFRAEGIEVLEHTQA  239 (467)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTTTSCHHHHHHHHHHHHHTTCEEETTCCE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEECCccCCCCHHHHHHHHHHHHhCCCEEEcCCEE
Confidence            36799999999999999999999999 899999887532     1122334567789999887654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.81  E-value=0.0078  Score=47.01  Aligned_cols=80  Identities=9%  Similarity=0.083  Sum_probs=51.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHh--hcCCcEE
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISE--KTAYQWV  222 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~--~s~~d~V  222 (240)
                      .++|+|+|+|..|...+..|.+.|+ +|+++|+.+...... .. .....++.+..+..    -+.+.|.+  -...|+|
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~-~~-~~~~~~~~~i~gd~----~~~~~l~~a~i~~ad~v   75 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQ-LE-QRLGDNADVIPGDS----NDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHH-HH-HHHCTTCEEEESCT----TSHHHHHHHTTTTCSEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHH-HH-HhhcCCCeEEEcCC----CCHHHHHHcChhhCCEE
Confidence            5689999999999999999999999 799999864211000 01 11234667666542    22333332  2257888


Q ss_pred             EEecccchh
Q psy16201        223 YYSNCKVLS  231 (240)
Q Consensus       223 ~~s~~~~~~  231 (240)
                      +.++.....
T Consensus        76 i~~~~~d~~   84 (153)
T 1id1_A           76 LALSDNDAD   84 (153)
T ss_dssp             EECSSCHHH
T ss_pred             EEecCChHH
Confidence            888655433

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=96.77  E-value=0.0015  Score=56.36  Aligned_cols=61  Identities=20%  Similarity=0.335  Sum_probs=45.7

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHH-hccCceEEeCCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIV-KGTTSRHLYGPEQ  204 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~-~~~gv~~~~~~~v  204 (240)
                      ..+++|+|||+|++|+.+|..|++.|. +|+++++...........+.+ +..|+++.++..+
T Consensus       171 ~~~~~v~vvG~G~~g~e~a~~l~~~g~-~v~~v~~~~~~~~~~~~~~~l~~~~gv~i~~~~~v  232 (338)
T 3itj_A          171 FRNKPLAVIGGGDSACEEAQFLTKYGS-KVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVA  232 (338)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSS-EEEEECSSSSCCSCHHHHHHHHHCTTEEEECSEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEEcCCccCCCHHHHHHHHhcCCeEEeeccee
Confidence            357899999999999999999999999 899999887543222223334 3458888876543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.77  E-value=0.0018  Score=56.88  Aligned_cols=60  Identities=17%  Similarity=0.126  Sum_probs=42.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc-------------cccchHHHhccC-ceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV-------------TNVSPRIVKGTT-SRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~-------------~~~~~~~~~~~g-v~~~~~~~v  204 (240)
                      .+++|+|||+|.+|+.+|..|++.|. +|+++++.+....             .....+.+++.| +++..+..+
T Consensus       165 ~~~~vvVvG~G~~g~e~a~~l~~~g~-~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v  238 (369)
T 3d1c_A          165 NKGQYVVIGGNESGFDAAYQLAKNGS-DIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTV  238 (369)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTC-EEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhcCC-eEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEE
Confidence            46799999999999999999999999 8999998764220             012233445665 888876543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=96.77  E-value=0.0013  Score=56.97  Aligned_cols=59  Identities=19%  Similarity=0.175  Sum_probs=44.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      .+++|+|||+|++|+..|..|++.|. +|+++++.+.........+.+...|+++.++..
T Consensus       154 ~~~~v~viG~G~~g~e~a~~l~~~g~-~V~~i~~~~~~~~~~~l~~~l~~~gv~i~~~~~  212 (319)
T 3cty_A          154 KGKRVVTIGGGNSGAIAAISMSEYVK-NVTIIEYMPKYMCENAYVQEIKKRNIPYIMNAQ  212 (319)
T ss_dssp             BTSEEEEECCSHHHHHHHHHHTTTBS-EEEEECSSSSCCSCHHHHHHHHHTTCCEECSEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhCC-cEEEEEcCCccCCCHHHHHHHhcCCcEEEcCCe
Confidence            36899999999999999999999999 899999876532222233445567888776643

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=96.77  E-value=0.0016  Score=55.95  Aligned_cols=59  Identities=10%  Similarity=0.157  Sum_probs=43.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHH-hccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIV-KGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~-~~~gv~~~~~~~  203 (240)
                      .+++|+|||+|++|+..|..|++.|. +|+++++.+.........+.+ +..|+++.++..
T Consensus       142 ~~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~  201 (311)
T 2q0l_A          142 KNKEVAVLGGGDTAVEEAIYLANICK-KVYLIHRRDGFRCAPITLEHAKNNDKIEFLTPYV  201 (311)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHTTSS-EEEEECSSSSCCSCHHHHHHHHTCTTEEEETTEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEeeCCccCCCHHHHHHHhhCCCeEEEeCCE
Confidence            46899999999999999999999999 899999887542211122223 356888877653

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=96.77  E-value=0.0014  Score=60.67  Aligned_cols=59  Identities=12%  Similarity=0.189  Sum_probs=46.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      ..++|+|||+|.+|+..|..|++.|. +|+++++.+...      +.....+.+++.|+++.++..
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~  250 (478)
T 3dk9_A          186 LPGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQ  250 (478)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEE
T ss_pred             cCccEEEECCCHHHHHHHHHHHHcCC-eEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCE
Confidence            35799999999999999999999999 899999876422      222334566778998887653

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=96.76  E-value=0.0019  Score=60.56  Aligned_cols=60  Identities=13%  Similarity=0.242  Sum_probs=47.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHc---CCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRM---GYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~---G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|..|+..|..|++.   |. +|+++++.+...      +.....+.+++.|++++++..+
T Consensus       190 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~-~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v  258 (495)
T 2wpf_A          190 PPRRVLTVGGGFISVEFAGIFNAYKPPGG-KVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENP  258 (495)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTC-EEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEESCCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhCCCCC-eEEEEEcCCccccccCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence            357999999999999999999999   99 899999987522      1222345567889999888654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=96.76  E-value=0.0022  Score=61.23  Aligned_cols=59  Identities=19%  Similarity=0.273  Sum_probs=46.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-----ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-----VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-----~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++++|||+|+.|+..|..+++.|. +|||+++.....     +.....+.++..|+.+.++..+
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~-~VTii~~~~~L~~~D~ei~~~l~~~l~~~gi~~~~~~~v  286 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGY-DVTVAVRSIVLRGFDQQCAVKVKLYMEEQGVMFKNGILP  286 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTC-CEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETCCE
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCC-eEEEecccccccccchhHHHHHHHHHHhhcceeecceEE
Confidence            4789999999999999999999999 799999754321     2223345667889999887654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=96.75  E-value=0.0016  Score=56.05  Aligned_cols=60  Identities=15%  Similarity=0.144  Sum_probs=45.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcccc----ccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVT----NVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~----~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .+++|+|||+|.+|+..|..|++.|. +|+++++.+.....    ....+.+++.|+++.++..+
T Consensus       144 ~~~~v~ViG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v  207 (320)
T 1trb_A          144 RNQKVAVIGGGNTAVEEALYLSNIAS-EVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTL  207 (320)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSS-EEEEECSSSSCCCCHHHHHHHHHHHHTSSEEEECSCEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEEeCCccccCHHHHHHHHHhcccCCeEEEcCcee
Confidence            46899999999999999999999999 89999987653211    11223345678888877643

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=96.75  E-value=0.0017  Score=60.48  Aligned_cols=60  Identities=17%  Similarity=0.244  Sum_probs=46.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|++|+..|..|++.|. +|+++++.+...      +.....+.++..|+++.++..+
T Consensus       197 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~v  262 (491)
T 3urh_A          197 VPASMIVVGGGVIGLELGSVWARLGA-KVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKV  262 (491)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC-EEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEECCeE
Confidence            46799999999999999999999999 899999887532      1223345567789998877543

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.73  E-value=0.0013  Score=56.85  Aligned_cols=37  Identities=22%  Similarity=0.412  Sum_probs=33.5

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      .+++|+|||+|+.|+.+|..|++.|. +|+++++.+..
T Consensus       144 ~~k~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~  180 (312)
T 4gcm_A          144 KNKRLFVIGGGDSAVEEGTFLTKFAD-KVTIVHRRDEL  180 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHTTTCS-EEEEECSSSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEeccccc
Confidence            35799999999999999999999999 89999988753

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=96.72  E-value=0.0024  Score=58.79  Aligned_cols=60  Identities=15%  Similarity=0.311  Sum_probs=47.5

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|.+|+.+|..|++.|. +|+++++.+...       +.....+.+++.|+++.++..+
T Consensus       146 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v  212 (452)
T 3oc4_A          146 NSQTVAVIGAGPIGMEAIDFLVKMKK-TVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETV  212 (452)
T ss_dssp             TCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence            35799999999999999999999999 899999887532       1123345567889999887654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=96.72  E-value=0.0023  Score=59.17  Aligned_cols=60  Identities=22%  Similarity=0.359  Sum_probs=47.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|++|+..|..|++.|. +|+++++.+...      +.....+.++..|++++++..+
T Consensus       179 ~~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~v  244 (476)
T 3lad_A          179 VPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARV  244 (476)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEECCEE
Confidence            45799999999999999999999999 899999887432      1223345567789999887644

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=96.71  E-value=0.0013  Score=62.18  Aligned_cols=36  Identities=22%  Similarity=0.402  Sum_probs=32.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+++|||+|++|+.+|..|++.|+ +|.|+|+...
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~-~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCCC
Confidence            45689999999999999999999999 7999999863

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=96.70  E-value=0.0021  Score=60.05  Aligned_cols=60  Identities=8%  Similarity=0.099  Sum_probs=47.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHc---CCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRM---GYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~---G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|+.|+..|..|++.   |. +|+++++.+...      +.....+.++..|++++++..+
T Consensus       186 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~-~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v  254 (490)
T 1fec_A          186 APKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENP  254 (490)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhccCcC-eEEEEEcCCCcccccCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence            357999999999999999999999   99 899999987522      1222345567889999888654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=96.68  E-value=0.0012  Score=63.08  Aligned_cols=34  Identities=21%  Similarity=0.404  Sum_probs=31.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +.+|+|||+||+|+++|..+++.|. +|.++|+..
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~-kValIE~~~   75 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGA-RVLLFDYVK   75 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTC-CEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence            4689999999999999999999999 799999643

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=96.65  E-value=0.0023  Score=55.54  Aligned_cols=59  Identities=15%  Similarity=0.342  Sum_probs=43.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccc-cchHHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTN-VSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~-~~~~~~~~~gv~~~~~~~  203 (240)
                      .+++|+|||+|.+|+..|..|++.|. +|+++++.+...... ...+..+..|+++.++..
T Consensus       151 ~~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~~~~~~~l~~~~gv~i~~~~~  210 (325)
T 2q7v_A          151 KGKKVVVIGGGDAAVEEGMFLTKFAD-EVTVIHRRDTLRANKVAQARAFANPKMKFIWDTA  210 (325)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHTTTCS-EEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEeCCCcCCcchHHHHHHHhcCCceEecCCc
Confidence            36899999999999999999999999 899999876532211 112233456888877653

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.62  E-value=0.0046  Score=57.54  Aligned_cols=62  Identities=8%  Similarity=0.201  Sum_probs=45.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccc--hHHHhccCceEEeCCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVS--PRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~--~~~~~~~gv~~~~~~~v  204 (240)
                      ..+++|+|||+|.+|+.+|..+.+.|.++|+++++.+...+....  ...+.+.|++|.++..+
T Consensus       262 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~~~~~~~Gv~~~~~~~~  325 (456)
T 2vdc_G          262 AAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAP  325 (456)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHHHHHHHHTTCEEECCSSS
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHHHHHHHHCCCEEEeCCCc
Confidence            357899999999999999999999998459999987643211111  12346678888876643

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=96.60  E-value=0.0025  Score=60.07  Aligned_cols=59  Identities=8%  Similarity=0.141  Sum_probs=46.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      +++|+|||+|.+|+..|..|++.|. +|+++++.+...      +...+.+.+++.|++++++..+
T Consensus       214 g~~vvViGgG~~g~E~A~~l~~~G~-~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V  278 (523)
T 1mo9_A          214 GSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNV  278 (523)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEecCcccccccHHHHHHHHHHHHhCCcEEEECCEE
Confidence            4899999999999999999999999 899999887422      1122345567889999887644

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=96.59  E-value=0.0029  Score=60.20  Aligned_cols=83  Identities=12%  Similarity=0.117  Sum_probs=56.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCccCcc------cCHH
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQGSF------LNIE  211 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~vg~~------i~~e  211 (240)
                      ..++|+|||+|.+|+.+|..|++.|. +|+++++.+...      +.....+.++..|+++.++..+-..      +.++
T Consensus       186 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~~  264 (588)
T 3ics_A          186 KPRHATVIGGGFIGVEMVENLRERGI-EVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAVVRLK  264 (588)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTEEEET
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCCEEEEC
Confidence            36799999999999999999999999 899999876422      1222345567889999887654221      1111


Q ss_pred             HHHhhcCCcEEEEeccc
Q psy16201        212 LISEKTAYQWVYYSNCK  228 (240)
Q Consensus       212 ~L~~~s~~d~V~~s~~~  228 (240)
                      .=.. -.+|.|+++...
T Consensus       265 ~g~~-i~~D~Vi~a~G~  280 (588)
T 3ics_A          265 SGSV-IQTDMLILAIGV  280 (588)
T ss_dssp             TSCE-EECSEEEECSCE
T ss_pred             CCCE-EEcCEEEEccCC
Confidence            0000 137888888643

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.55  E-value=0.0079  Score=49.81  Aligned_cols=75  Identities=15%  Similarity=0.134  Sum_probs=51.0

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHh--hcCCcEEEE
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISE--KTAYQWVYY  224 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~--~s~~d~V~~  224 (240)
                      +|+|+|+|..|...|..|.+.|+ +|+++|+++.-     .....+..+..+..+..    .+.+.|.+  -...|+|+.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~-----~~~l~~~~~~~~i~gd~----~~~~~l~~a~i~~ad~vi~   71 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDREL-----CEEFAKKLKATIIHGDG----SHKEILRDAEVSKNDVVVI   71 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHH-----HHHHHHHSSSEEEESCT----TSHHHHHHHTCCTTCEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHH-----HHHHHHHcCCeEEEcCC----CCHHHHHhcCcccCCEEEE
Confidence            79999999999999999999999 79999976431     12222335677666552    23333333  124788888


Q ss_pred             ecccchh
Q psy16201        225 SNCKVLS  231 (240)
Q Consensus       225 s~~~~~~  231 (240)
                      +..+...
T Consensus        72 ~~~~d~~   78 (218)
T 3l4b_C           72 LTPRDEV   78 (218)
T ss_dssp             CCSCHHH
T ss_pred             ecCCcHH
Confidence            8765543

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=96.54  E-value=0.003  Score=58.89  Aligned_cols=60  Identities=10%  Similarity=0.146  Sum_probs=47.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|..|+..|..|++.|. +|+++++.+...      +.....+.++..|++++++..+
T Consensus       181 ~~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~V  246 (499)
T 1xdi_A          181 LPDHLIVVGSGVTGAEFVDAYTELGV-PVTVVASQDHVLPYEDADAALVLEESFAERGVRLFKNARA  246 (499)
T ss_dssp             CCSSEEEESCSHHHHHHHHHHHHTTC-CEEEECSSSSSSCCSSHHHHHHHHHHHHHTTCEEETTCCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            35799999999999999999999999 799999887532      1223345567889999887654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=96.54  E-value=0.0027  Score=59.31  Aligned_cols=59  Identities=14%  Similarity=0.161  Sum_probs=44.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|++|+.+|..|++.|. +|+++++.+...      +.....+.++.. +++.++..+
T Consensus       173 ~~k~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~~v  237 (492)
T 3ic9_A          173 LPKSVAVFGPGVIGLELGQALSRLGV-IVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARV  237 (492)
T ss_dssp             CCSEEEEESSCHHHHHHHHHHHHTTC-EEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTCEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECCEE
Confidence            46899999999999999999999999 899999987532      111223344455 788776543

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=96.53  E-value=0.0031  Score=53.82  Aligned_cols=60  Identities=13%  Similarity=0.225  Sum_probs=46.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc-cccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV-TNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~-~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .+++|+|||+|++|+.+|..|++.|. +|+++++.+.... .....+.++..|+++.++..+
T Consensus       146 ~~~~v~viG~g~~~~e~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v  206 (315)
T 3r9u_A          146 KNKEVAVLGGGDTALEEALYLANICS-KIYLIHRRDEFRAAPSTVEKVKKNEKIELITSASV  206 (315)
T ss_dssp             TTSEEEEECCBHHHHHHHHHHHTTSS-EEEEECSSSSCBSCHHHHHHHHHCTTEEEECSCEE
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhhCC-EEEEEEeCCCCCCCHHHHHHHHhcCCeEEEeCcEE
Confidence            46899999999999999999999999 8999998875321 122234456788888877644

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=96.47  E-value=0.004  Score=57.51  Aligned_cols=60  Identities=22%  Similarity=0.197  Sum_probs=47.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCCCccc-------cccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNTYDMV-------TNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~~~~~-------~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|.+|+.+|..|++. |. +|+++++.+....       .....+.+++.|+++.++..+
T Consensus       158 ~~~~vvViGgG~~g~e~A~~l~~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v  225 (472)
T 3iwa_A          158 EVSKAVIVGGGFIGLEMAVSLADMWGI-DTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKV  225 (472)
T ss_dssp             SCSEEEEECCSHHHHHHHHHHHHHHCC-EEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCC-cEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEE
Confidence            367999999999999999999999 99 8999998774321       122334567889999887654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.46  E-value=0.0042  Score=57.79  Aligned_cols=58  Identities=21%  Similarity=0.363  Sum_probs=44.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-----ccccchHHHhccCceEEeCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-----VTNVSPRIVKGTTSRHLYGP  202 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-----~~~~~~~~~~~~gv~~~~~~  202 (240)
                      ..++|+|||+|++|+..|..|++.|. +|+++++.....     +.....+.+++.|++++++.
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~gv~~~~~~  246 (488)
T 3dgz_A          184 SPGKTLVVGASYVALECAGFLTGIGL-DTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGC  246 (488)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEEcCcccccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence            35689999999999999999999999 799999864211     12223455678899998774

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.46  E-value=0.004  Score=59.41  Aligned_cols=57  Identities=19%  Similarity=0.250  Sum_probs=43.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc-c----ccccchHHHhccCceEEeCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD-M----VTNVSPRIVKGTTSRHLYGP  202 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~-~----~~~~~~~~~~~~gv~~~~~~  202 (240)
                      .++|+|||+|.+|+.+|..|++.|. +|+++++.... .    +.....+.+++.|+++.++.
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~  347 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGG-DVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLC  347 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-EEEEEECCcCcCcCCHHHHHHHHHHHHhCCCEEEECC
Confidence            5689999999999999999999999 79999987311 1    11222345567899988764

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=96.45  E-value=0.0065  Score=57.61  Aligned_cols=70  Identities=17%  Similarity=0.141  Sum_probs=51.8

Q ss_pred             CCCeEEEECCChhHHHH-HHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201        144 PDTKIALIGCGPASLSC-ATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV  222 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~-a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V  222 (240)
                      ..++|.|||.|-+|+++ |..|.++|+ +|++.|......    ..+.++..|+.+.+|..      .+.+..  ..|.|
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~-~V~~sD~~~~~~----~~~~L~~~gi~~~~G~~------~~~~~~--~~d~v   84 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALGH-TVTGSDANIYPP----MSTQLEQAGVTIEEGYL------IAHLQP--APDLV   84 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCCTT----HHHHHHHTTCEEEESCC------GGGGCS--CCSEE
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCCC-EEEEECCCCCcH----HHHHHHHCCCEEECCCC------HHHcCC--CCCEE
Confidence            46799999999999984 888899999 899999875432    23467778999887642      122222  38999


Q ss_pred             EEec
Q psy16201        223 YYSN  226 (240)
Q Consensus       223 ~~s~  226 (240)
                      |+|.
T Consensus        85 V~Sp   88 (524)
T 3hn7_A           85 VVGN   88 (524)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            9984

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.45  E-value=0.0029  Score=59.67  Aligned_cols=59  Identities=17%  Similarity=0.205  Sum_probs=44.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhc-cCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKG-TTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~-~gv~~~~~~~  203 (240)
                      .+++|+|||+|.+|+.+|..|++.|. +|+++++.+.........+.+.. .|+++.++..
T Consensus       354 ~~k~V~ViGgG~~g~E~A~~L~~~g~-~Vtlv~~~~~l~~~~~l~~~l~~~~gV~v~~~~~  413 (521)
T 1hyu_A          354 KGKRVAVIGGGNSGVEAAIDLAGIVE-HVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQ  413 (521)
T ss_dssp             BTSEEEEECCSHHHHHHHHHHHHHBS-EEEEECSSSSCCSCHHHHHHHTTCTTEEEECSEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhCC-EEEEEEeCcccCcCHHHHHHHhcCCCcEEEeCCE
Confidence            46899999999999999999999999 89999988754322223344444 5888776643

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.42  E-value=0.0026  Score=55.26  Aligned_cols=59  Identities=14%  Similarity=0.091  Sum_probs=44.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc----ccccchHHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM----VTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~----~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      .+++|+|||+|.+|+..|..|++.|. +|+++++.+...    ....+.+.+++.|+++.++..
T Consensus       151 ~~~~v~viG~G~~g~e~a~~l~~~g~-~V~~v~~~~~~~~~~~~~~~l~~~l~~~gv~v~~~~~  213 (335)
T 2zbw_A          151 QGKRVLIVGGGDSAVDWALNLLDTAR-RITLIHRRPQFRAHEASVKELMKAHEEGRLEVLTPYE  213 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHTTTTSS-EEEEECSSSSCCSCHHHHHHHHHHHHTTSSEEETTEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhCC-EEEEEEcCCccCccHHHHHHHHhccccCCeEEecCCc
Confidence            46899999999999999999999999 899999876422    111223344556888877643

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.40  E-value=0.0058  Score=56.02  Aligned_cols=59  Identities=14%  Similarity=0.160  Sum_probs=45.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc-------cccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV-------TNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~-------~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .+++|+|||+|.+|+.+|..|++.|. +|+++++.+....       .....+.++.. +++.++..+
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v  212 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQGK-NVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEIT  212 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC-eEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeE
Confidence            46799999999999999999999999 8999998875321       11223445566 888877644

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=96.40  E-value=0.0027  Score=54.47  Aligned_cols=37  Identities=22%  Similarity=0.448  Sum_probs=33.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+++|+|||+|..|+.+|..|++.|. +|+++++...
T Consensus       150 ~~~~~vvViGgG~ig~e~A~~l~~~G~-~Vt~v~~~~~  186 (314)
T 4a5l_A          150 FRNKVLMVVGGGDAAMEEALHLTKYGS-KVIILHRRDA  186 (314)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSS-EEEEECSSSS
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHhCC-eeeeeccccc
Confidence            346899999999999999999999999 8999998764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.39  E-value=0.0033  Score=55.20  Aligned_cols=37  Identities=27%  Similarity=0.369  Sum_probs=33.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+++|+|||+|..|+..+..|.+.|+ +|+|++....
T Consensus        11 l~~k~VLVVGgG~va~rka~~Ll~~Ga-~VtViap~~~   47 (274)
T 1kyq_A           11 LKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLH   47 (274)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEEC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHhCCC-EEEEEcCCCC
Confidence            468999999999999999999999999 8999997643

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=96.38  E-value=0.0049  Score=58.01  Aligned_cols=57  Identities=19%  Similarity=0.299  Sum_probs=43.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc-c----ccccchHHHhccCceEEeCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD-M----VTNVSPRIVKGTTSRHLYGP  202 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~-~----~~~~~~~~~~~~gv~~~~~~  202 (240)
                      .++|+|||+|.+|+..|..|++.|. +|+++++.... .    +.....+.+++.|+++.++.
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~-~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~v~~~~  271 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGL-DVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQF  271 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEESE
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC-eEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence            4579999999999999999999999 79999985321 1    12223345678899988774

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.35  E-value=0.0037  Score=53.77  Aligned_cols=59  Identities=14%  Similarity=0.193  Sum_probs=45.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      .+++|+|||+|.+|+.+|..|++.|. +|+++++.+.........+.++..|+++.++..
T Consensus       153 ~~~~v~vvG~g~~~~e~a~~l~~~~~-~v~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~  211 (332)
T 3lzw_A          153 AGRRVAILGGGDSAVDWALMLEPIAK-EVSIIHRRDKFRAHEHSVENLHASKVNVLTPFV  211 (332)
T ss_dssp             BTCEEEEECSSHHHHHHHHHHTTTBS-EEEEECSSSSCSSCHHHHHHHHHSSCEEETTEE
T ss_pred             CCCEEEEECCCHhHHHHHHHHHhhCC-eEEEEEecCcCCccHHHHHHHhcCCeEEEeCce
Confidence            46899999999999999999999999 899999887532222123345678888877643

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=96.35  E-value=0.0053  Score=56.59  Aligned_cols=60  Identities=13%  Similarity=0.106  Sum_probs=47.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|++|+..|..|++.|. +|+++++.+...      +.....+.++..|++++++..+
T Consensus       169 ~~~~v~ViGgG~~g~e~A~~l~~~g~-~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v  234 (463)
T 4dna_A          169 LPESILIAGGGYIAVEFANIFHGLGV-KTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDII  234 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCEE
Confidence            46799999999999999999999999 899999876422      1222334567889999887654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.34  E-value=0.0044  Score=46.80  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=30.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +.+|+|+|+|..|...|..|.+.|+ +|+++|+..
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            5689999999999999999999999 899999754

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.32  E-value=0.0054  Score=52.39  Aligned_cols=59  Identities=15%  Similarity=0.180  Sum_probs=44.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcccc-ccchHHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVT-NVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~-~~~~~~~~~~gv~~~~~~~  203 (240)
                      .+++|+|||+|++|+.+|..|.+.|. +|+++++.+..... ....+..+..|+++.++..
T Consensus       153 ~~~~v~vvG~G~~~~e~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~  212 (323)
T 3f8d_A          153 KNRVVAVIGGGDSALEGAEILSSYST-KVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSV  212 (323)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHSS-EEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCC-eEEEEEeCCCCCcCHHHHHHHHhCCCcEEEeCCE
Confidence            46899999999999999999999999 89999988753221 1222333455888877653

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=96.31  E-value=0.0052  Score=56.99  Aligned_cols=60  Identities=20%  Similarity=0.309  Sum_probs=45.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc-c----ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD-M----VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~-~----~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|++|+..|..|++.|. +|+++++.... .    +.....+.+++.|++++++..+
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v  250 (483)
T 3dgh_A          186 EPGKTLVVGAGYIGLECAGFLKGLGY-EPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVP  250 (483)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCSSTTSCHHHHHHHHHHHHHTTCCEEETEEE
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence            35789999999999999999999999 89999985321 1    1222335567789998887543

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.25  E-value=0.01  Score=55.41  Aligned_cols=74  Identities=14%  Similarity=0.121  Sum_probs=52.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV  222 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V  222 (240)
                      -.+++|+|||+|..|...+..|.+.|. +|+|++......    ........++.+..+.     ...++|.   +++.|
T Consensus        10 l~~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~~~~~~----~~~l~~~~~i~~~~~~-----~~~~~l~---~~~lV   76 (457)
T 1pjq_A           10 LRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIPQ----FTVWANEGMLTLVEGP-----FDETLLD---SCWLA   76 (457)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCHH----HHHHHTTTSCEEEESS-----CCGGGGT---TCSEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcCCCCHH----HHHHHhcCCEEEEECC-----CCccccC---CccEE
Confidence            458899999999999999999999999 899999754332    1222233456666543     3444443   48999


Q ss_pred             EEecccc
Q psy16201        223 YYSNCKV  229 (240)
Q Consensus       223 ~~s~~~~  229 (240)
                      |.++...
T Consensus        77 i~at~~~   83 (457)
T 1pjq_A           77 IAATDDD   83 (457)
T ss_dssp             EECCSCH
T ss_pred             EEcCCCH
Confidence            9887554

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=96.17  E-value=0.006  Score=56.62  Aligned_cols=60  Identities=12%  Similarity=0.227  Sum_probs=46.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|++|+..|..|++.|. +|+++++.+...      +.....+.++..|++++++..+
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V  255 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANIFHGLGV-KTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATV  255 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            46799999999999999999999999 899999886421      1222334556789998887654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.09  E-value=0.0052  Score=54.11  Aligned_cols=59  Identities=14%  Similarity=0.156  Sum_probs=44.5

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc----ccccchHHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM----VTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~----~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      .+++|+|||+|.+|+..|..|++.|. +|+++++.+...    ....+.+.++..|++++++..
T Consensus       162 ~~~~vvVvG~G~~g~e~A~~l~~~g~-~V~lv~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~  224 (360)
T 3ab1_A          162 KGKRVVIVGGGDSALDWTVGLIKNAA-SVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETE  224 (360)
T ss_dssp             TTCEEEEECSSHHHHHHHHHTTTTSS-EEEEECSSSSCSSCSHHHHSSHHHHHHTSEEEESSEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCC-EEEEEEcCCCCCCCHHHHHHHHHHhhcCceEEEcCcC
Confidence            46899999999999999999999999 899999876422    122233445566788877643

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=96.03  E-value=0.0061  Score=57.20  Aligned_cols=34  Identities=21%  Similarity=0.221  Sum_probs=31.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|||+|++|+.+|..|++.|+ +|.|+|+..
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~~-~v~~~e~~~   38 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAGV-QTLMLEMGQ   38 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence            4589999999999999999999999 799999876

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.02  E-value=0.0085  Score=56.00  Aligned_cols=59  Identities=19%  Similarity=0.183  Sum_probs=44.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHH----cCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSR----MGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~----~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      +++|+|||+|++|+.+|..|++    .|. +|+++++.+...       +.....+.++..|++++++..+
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~-~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V  249 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIV  249 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCC-EEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCEE
Confidence            6799999999999999999877    478 799998765321       1222334567889999888654

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=96.01  E-value=0.0042  Score=57.84  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHH-cCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSR-MGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~-~G~~~V~v~e~~~~  180 (240)
                      ...+++|||+|++|+.+|..|++ .|+ +|.|+|+...
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~-~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDS-RVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTS-CEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCC-eEEEEcCCCC
Confidence            36799999999999999999997 689 7999998753

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.96  E-value=0.0077  Score=44.01  Aligned_cols=34  Identities=21%  Similarity=0.412  Sum_probs=31.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC-CCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG-YDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~  179 (240)
                      .++|+|+|+|..|...+..|.+.| + +|+++++..
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~-~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNY-SVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSE-EEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCH
Confidence            568999999999999999999999 8 799999864

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.92  E-value=0.021  Score=52.59  Aligned_cols=76  Identities=9%  Similarity=0.192  Sum_probs=51.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhh--cCCcEE
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEK--TAYQWV  222 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~--s~~d~V  222 (240)
                      +.+|+|+|.|..|...|..|.+.|+ .|+++|+++.-      -+.++..|+.+.+|..    -..+.|...  ...++|
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~------v~~~~~~g~~vi~GDa----t~~~~L~~agi~~A~~v   72 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDH------IETLRKFGMKVFYGDA----TRMDLLESAGAAKAEVL   72 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHH------HHHHHHTTCCCEESCT----TCHHHHHHTTTTTCSEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHH------HHHHHhCCCeEEEcCC----CCHHHHHhcCCCccCEE
Confidence            4589999999999999999999999 79999977531      1223445666666552    233333321  236777


Q ss_pred             EEecccchh
Q psy16201        223 YYSNCKVLS  231 (240)
Q Consensus       223 ~~s~~~~~~  231 (240)
                      +.+..+...
T Consensus        73 iv~~~~~~~   81 (413)
T 3l9w_A           73 INAIDDPQT   81 (413)
T ss_dssp             EECCSSHHH
T ss_pred             EECCCChHH
Confidence            777655433

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.88  E-value=0.0091  Score=46.21  Aligned_cols=70  Identities=16%  Similarity=0.187  Sum_probs=46.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEE
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYY  224 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~  224 (240)
                      +++|+|||+|..|...+..|.+.|+ +|+++++...-     ...+.+..+..+..-      -+++++..  ..|.|+.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~-----~~~~a~~~~~~~~~~------~~~~~~~~--~~Divi~   86 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDH-----VRAFAEKYEYEYVLI------NDIDSLIK--NNDVIIT   86 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHH-----HHHHHHHHTCEEEEC------SCHHHHHH--TCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHH-----HHHHHHHhCCceEee------cCHHHHhc--CCCEEEE
Confidence            7799999999999999999999999 69999986431     112223334332211      23344333  3888888


Q ss_pred             eccc
Q psy16201        225 SNCK  228 (240)
Q Consensus       225 s~~~  228 (240)
                      ++..
T Consensus        87 at~~   90 (144)
T 3oj0_A           87 ATSS   90 (144)
T ss_dssp             CSCC
T ss_pred             eCCC
Confidence            7643

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=95.85  E-value=0.0085  Score=56.31  Aligned_cols=36  Identities=22%  Similarity=0.192  Sum_probs=32.6

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ....+++|||+|++|+.+|..|++.|. +|.|+|+..
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~-~v~~~e~~~   44 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGI-PTQIVEMGR   44 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCC-cEEEEECCC
Confidence            345789999999999999999999999 799999875

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.83  E-value=0.034  Score=48.73  Aligned_cols=37  Identities=14%  Similarity=0.314  Sum_probs=32.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..-.+|.|||.|..|...|..|++.|+ +|+++|+...
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~   55 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLS   55 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGG
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHH
Confidence            445789999999999999999999999 8999998753

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=95.81  E-value=0.0056  Score=58.04  Aligned_cols=34  Identities=21%  Similarity=0.416  Sum_probs=31.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+++|||+|.+|+.+|..|++ |. +|.|+|+...
T Consensus        26 ~yD~IIVGsG~AG~v~A~rLse-g~-~VlvLEaG~~   59 (536)
T 1ju2_A           26 SYDYVIVGGGTSGCPLAATLSE-KY-KVLVLERGSL   59 (536)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT-TS-CEEEECSSBC
T ss_pred             cccEEEECccHHHHHHHHHHhc-CC-cEEEEecCCC
Confidence            4689999999999999999999 99 8999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.78  E-value=0.01  Score=44.90  Aligned_cols=34  Identities=29%  Similarity=0.384  Sum_probs=30.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .++|+|+|+|..|...+..|.+.|+ +|+++|+..
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            4689999999999999999999999 799999753

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=95.78  E-value=0.0074  Score=61.30  Aligned_cols=56  Identities=9%  Similarity=0.083  Sum_probs=45.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~  203 (240)
                      .+++|+|||+|+.|+.+|..|++.|. +|+|+++.+.....   .+.++..|++++++..
T Consensus       283 ~gk~vvViGgG~~g~E~A~~L~~~G~-~Vtvv~~~~~~~~~---~~~l~~~GV~v~~~~~  338 (965)
T 2gag_A          283 AGARIAVATTNDSAYELVRELAATGG-VVAVIDARSSISAA---AAQAVADGVQVISGSV  338 (965)
T ss_dssp             SCSSEEEEESSTTHHHHHHHHGGGTC-CSEEEESCSSCCHH---HHHHHHTTCCEEETEE
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEECCCccchh---HHHHHhCCeEEEeCCE
Confidence            36799999999999999999999999 79999988754321   4556778888887753

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=95.76  E-value=0.0074  Score=56.78  Aligned_cols=59  Identities=15%  Similarity=0.198  Sum_probs=44.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc--------------CCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM--------------GYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~--------------G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..+++|||+|++|+..|..|+..              +. +|+++|..+...      +.....+.+++.|+++++|..+
T Consensus       217 ~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~-~V~lve~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~v  295 (502)
T 4g6h_A          217 LLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEV-QIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAV  295 (502)
T ss_dssp             HTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHC-EEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEETTEEE
T ss_pred             ccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccc-eeEEeccccccccCCCHHHHHHHHHHHHhcceeeecCceE
Confidence            35899999999999999887653              35 699999987522      2233456778899999887654

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=95.68  E-value=0.0098  Score=58.48  Aligned_cols=58  Identities=16%  Similarity=0.010  Sum_probs=44.7

Q ss_pred             CCCeEEEEC--CChhHHHHHHHHHHcCCCcEEEEecCCCccc----c---ccchHHHhccCceEEeCCc
Q psy16201        144 PDTKIALIG--CGPASLSCATFLSRMGYDDITIYEKNTYDMV----T---NVSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       144 ~~~~VaViG--~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~----~---~~~~~~~~~~gv~~~~~~~  203 (240)
                      .+++|+|||  +|..|+.+|..|++.|. +|+++++.+ ...    .   ....+.+++.|+++.++..
T Consensus       527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G~-~Vtlv~~~~-l~~~~~~~~~~~~~~~~l~~~GV~i~~~~~  593 (729)
T 1o94_A          527 IGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH-LANYMHFTLEYPNMMRRLHELHVEELGDHF  593 (729)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC-TTHHHHHTTCHHHHHHHHHHTTCEEECSEE
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcCC-EEEEEeccc-ccccccccccHHHHHHHHHhCCCEEEcCcE
Confidence            367999999  89999999999999999 899999877 211    1   1223445678999887753

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.66  E-value=0.036  Score=47.80  Aligned_cols=34  Identities=26%  Similarity=0.434  Sum_probs=31.2

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ++|.|||.|..|...|..|++.|+ +|+++++...
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHH
Confidence            589999999999999999999999 8999998753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=95.61  E-value=0.017  Score=53.32  Aligned_cols=36  Identities=25%  Similarity=0.327  Sum_probs=33.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..++|+|||+|++|+..|..|++.|. +|+++++.+.
T Consensus       171 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~  206 (466)
T 3l8k_A          171 LPQDMVIIGAGYIGLEIASIFRLMGV-QTHIIEMLDR  206 (466)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-EEEEEEeCCc
Confidence            45799999999999999999999999 8999998775

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=95.60  E-value=0.015  Score=49.02  Aligned_cols=54  Identities=17%  Similarity=0.235  Sum_probs=42.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEe
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLY  200 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~  200 (240)
                      .+++|+|||+|++|+..|..|++.|  +|+++++... .+.....+.++..|+++..
T Consensus       140 ~~~~v~vvG~G~~~~e~a~~l~~~g--~v~~v~~~~~-~~~~~~~~~l~~~gv~i~~  193 (297)
T 3fbs_A          140 DQGKIGVIAASPMAIHHALMLPDWG--ETTFFTNGIV-EPDADQHALLAARGVRVET  193 (297)
T ss_dssp             TTCEEEEECCSTTHHHHHHHGGGTS--EEEEECTTTC-CCCHHHHHHHHHTTCEEEC
T ss_pred             cCCEEEEEecCccHHHHHHHhhhcC--cEEEEECCCC-CCCHHHHHHHHHCCcEEEc
Confidence            4689999999999999999999998  4999997765 2233345566778888764

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=95.49  E-value=0.012  Score=55.85  Aligned_cols=37  Identities=16%  Similarity=0.323  Sum_probs=34.1

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+++|+|||+|.+|+.+|..|++.|. +|+++++.+.
T Consensus       176 ~~~krV~VIG~G~sgve~a~~l~~~~~-~Vtv~~r~~~  212 (540)
T 3gwf_A          176 LAGRRVGVIGTGSTGQQVITSLAPEVE-HLTVFVRTPQ  212 (540)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHTTTCS-EEEEEESSCC
T ss_pred             cccceEEEECCCchHHHHHHHHHhhCC-EEEEEECCCC
Confidence            467899999999999999999999999 8999999875

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.43  E-value=0.015  Score=52.04  Aligned_cols=35  Identities=17%  Similarity=0.455  Sum_probs=31.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...+|+|||+|..|..-|..+++.|+ +|+++|..+
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~   39 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEP   39 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            35689999999999999999999999 799999765

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=95.40  E-value=0.04  Score=47.47  Aligned_cols=34  Identities=29%  Similarity=0.515  Sum_probs=31.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ++|.|||.|..|...|..|++.|+ +|+++++...
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHH
Confidence            479999999999999999999999 7999998753

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=95.40  E-value=0.012  Score=55.91  Aligned_cols=37  Identities=11%  Similarity=0.476  Sum_probs=34.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+++|+|||+|.+|+.+|..|++.|. +|++|++.+.
T Consensus       189 ~~~krV~VIG~G~sgve~a~~l~~~~~-~Vtv~~r~~~  225 (549)
T 4ap3_A          189 FTGKRVGVIGTGSSGIQSIPIIAEQAE-QLFVFQRSAN  225 (549)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBS-EEEEEESSCC
T ss_pred             cCCCEEEEECCCchHHHHHHHHHhhCC-EEEEEECCCC
Confidence            457899999999999999999999999 8999999874

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=95.39  E-value=0.042  Score=51.17  Aligned_cols=68  Identities=25%  Similarity=0.230  Sum_probs=51.7

Q ss_pred             CCCeEEEECCChhHHH-HHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201        144 PDTKIALIGCGPASLS-CATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV  222 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~-~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V  222 (240)
                      ..++|.|||.|-+|++ +|..|.++|+ +|++.|.....     ..+.++..|+.+..|..    .  +.+ .  +.++|
T Consensus        17 ~~~~i~viG~G~sG~s~~A~~l~~~G~-~V~~~D~~~~~-----~~~~l~~~gi~~~~g~~----~--~~~-~--~a~~v   81 (475)
T 1p3d_A           17 RVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGV-----VTQRLAQAGAKIYIGHA----E--EHI-E--GASVV   81 (475)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSH-----HHHHHHHTTCEEEESCC----G--GGG-T--TCSEE
T ss_pred             cCCEEEEEeecHHHHHHHHHHHHhCCC-EEEEECCCCCH-----HHHHHHhCCCEEECCCC----H--HHc-C--CCCEE
Confidence            4578999999999998 8899999999 89999986632     23456778998876642    1  223 2  48999


Q ss_pred             EEec
Q psy16201        223 YYSN  226 (240)
Q Consensus       223 ~~s~  226 (240)
                      ++|.
T Consensus        82 v~s~   85 (475)
T 1p3d_A           82 VVSS   85 (475)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            9985

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.39  E-value=0.042  Score=48.41  Aligned_cols=35  Identities=26%  Similarity=0.538  Sum_probs=32.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..++|.|||.|..|...|..|++.|+ +|+++++..
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   64 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTP   64 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCH
Confidence            45799999999999999999999999 899999764

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=95.36  E-value=0.012  Score=56.03  Aligned_cols=37  Identities=11%  Similarity=0.434  Sum_probs=33.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+++|+|||+|.+|+.+|..|++.+. +|++|++.+.
T Consensus       183 ~~~krV~VIG~G~tgve~a~~la~~~~-~Vtv~~r~~~  219 (545)
T 3uox_A          183 FTGKRVGVIGTGATGVQIIPIAAETAK-ELYVFQRTPN  219 (545)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHTTTBS-EEEEEESSCC
T ss_pred             cCCCeEEEECCCccHHHHHHHHHhhCC-EEEEEEcCCC
Confidence            457899999999999999999999999 8999999874

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.36  E-value=0.025  Score=57.72  Aligned_cols=58  Identities=17%  Similarity=0.261  Sum_probs=42.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcccccc--chHHHhccCceEEeCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNV--SPRIVKGTTSRHLYGP  202 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~--~~~~~~~~gv~~~~~~  202 (240)
                      +++|+|||+|..|+.+|..|++.|.++|+++++.+...+...  ....+++.|++|+++.
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~~~~~~~Gv~~~~~~  391 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFL  391 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHHHHHHHTTCEEECSE
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHHHHHHHcCCEEEeCC
Confidence            569999999999999999999999646999998864221111  1134466788876654

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=95.35  E-value=0.041  Score=51.48  Aligned_cols=69  Identities=17%  Similarity=0.183  Sum_probs=52.0

Q ss_pred             CCCCeEEEECCChhHHH-HHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcE
Q psy16201        143 FPDTKIALIGCGPASLS-CATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQW  221 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~-~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~  221 (240)
                      ...++|.|||.|-+|++ +|..|.++|+ +|++.|.....     ..+.++..|+.+..|..    .  +.+ .  +.++
T Consensus        17 ~~~~~v~viGiG~sG~s~~A~~l~~~G~-~V~~~D~~~~~-----~~~~l~~~gi~~~~g~~----~--~~~-~--~a~~   81 (491)
T 2f00_A           17 RRVRHIHFVGIGGAGMGGIAEVLANEGY-QISGSDLAPNP-----VTQQLMNLGATIYFNHR----P--ENV-R--DASV   81 (491)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHTTC-EEEEECSSCCH-----HHHHHHHTTCEEESSCC----G--GGG-T--TCSE
T ss_pred             ccCCEEEEEEcCHHHHHHHHHHHHhCCC-eEEEECCCCCH-----HHHHHHHCCCEEECCCC----H--HHc-C--CCCE
Confidence            34578999999999998 8899999999 89999986632     23456778998876542    1  223 2  4899


Q ss_pred             EEEec
Q psy16201        222 VYYSN  226 (240)
Q Consensus       222 V~~s~  226 (240)
                      |++|.
T Consensus        82 vv~s~   86 (491)
T 2f00_A           82 VVVSS   86 (491)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            99985

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=95.33  E-value=0.018  Score=56.01  Aligned_cols=60  Identities=13%  Similarity=0.095  Sum_probs=46.6

Q ss_pred             CCCeEEEEC--CChhHHHHHHHHHHcCCCcEEEEecCCCccc-------cccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIG--CGPASLSCATFLSRMGYDDITIYEKNTYDMV-------TNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG--~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~-------~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .+++|+|||  +|.+|+.+|..|++.|. +|+++++.+....       .....+.+++.|+++..+..+
T Consensus       522 ~g~~VvViG~ggG~~g~e~A~~L~~~g~-~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V  590 (690)
T 3k30_A          522 DGKKVVVYDDDHYYLGGVVAELLAQKGY-EVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAV  590 (690)
T ss_dssp             SSSEEEEEECSCSSHHHHHHHHHHHTTC-EEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEE
T ss_pred             CCCEEEEEcCCCCccHHHHHHHHHhCCC-eeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEE
Confidence            457899999  89999999999999999 8999998765221       112345567889999887654

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=95.30  E-value=0.013  Score=55.62  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=32.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~~  180 (240)
                      ..+++|||+|++|+.+|..|++. |. +|.|+|+...
T Consensus        13 ~~d~~ivG~G~~G~~~a~~l~~~~~~-~v~~~e~g~~   48 (546)
T 2jbv_A           13 EFDYIVVGGGSAGAAVAARLSEDPAV-SVALVEAGPD   48 (546)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTS-CEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCC-CEEEEecCCc
Confidence            46899999999999999999998 89 7999999864

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.26  E-value=0.018  Score=49.87  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=31.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -++|+|||+|..|...|..|++.|+ +|+++|+..
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~   37 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINT   37 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            3689999999999999999999999 899999875

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=95.25  E-value=0.016  Score=55.68  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=32.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHH-cCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSR-MGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~-~G~~~V~v~e~~~~  180 (240)
                      ..+++|||+|++|+++|..|++ .|. +|.|+|+...
T Consensus        24 ~~d~iivG~G~~g~~~a~~l~~~~~~-~v~~~e~g~~   59 (587)
T 1gpe_A           24 TYDYIIAGGGLTGLTVAAKLTENPKI-KVLVIEKGFY   59 (587)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTC-CEEEEESSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCC-cEEEEecCCc
Confidence            4689999999999999999999 799 7999999864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=95.21  E-value=0.02  Score=53.06  Aligned_cols=36  Identities=17%  Similarity=0.129  Sum_probs=33.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+++|+|||+|.+|+..|..|++.|. +|+++++.+.
T Consensus       196 ~~k~VvVVG~G~sg~eiA~~l~~~g~-~V~li~~~~~  231 (464)
T 2xve_A          196 KDKTVLLVGSSYSAEDIGSQCYKYGA-KKLISCYRTA  231 (464)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTC-SEEEEECSSC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHHhCC-eEEEEEECCC
Confidence            57899999999999999999999999 7999998764

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.16  E-value=0.021  Score=52.72  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=32.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+.+|+|+|+|+.|+.+|..|...|. +|+++|+...
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~  224 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPA  224 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHH
Confidence            46799999999999999999999999 8999998763

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=95.12  E-value=0.016  Score=55.68  Aligned_cols=35  Identities=20%  Similarity=0.199  Sum_probs=31.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC-CCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG-YDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~~  180 (240)
                      ..+++|||+|.+|+.+|..|++.| . +|.|+|+...
T Consensus         6 ~yDyIVVGgG~AG~v~A~rLse~~~~-~VLllEaG~~   41 (577)
T 3q9t_A            6 HFDFVIVGGGTAGNTVAGRLAENPNV-TVLIVEAGIG   41 (577)
T ss_dssp             EEEEEEESCSHHHHHHHHHHTTSTTS-CEEEECSSCS
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCC-cEEEEecCCC
Confidence            468999999999999999999988 7 7999999765

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.08  E-value=0.021  Score=49.68  Aligned_cols=33  Identities=15%  Similarity=0.324  Sum_probs=30.8

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|+|||+|..|...|..|++.|+ +|+++|+..
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            589999999999999999999999 899999874

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.99  E-value=0.022  Score=52.25  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=32.5

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+.+|+|+|+|..|+.+|..|...|. +|+++|+..
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            46899999999999999999999999 899999875

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=94.87  E-value=0.024  Score=51.85  Aligned_cols=36  Identities=8%  Similarity=0.024  Sum_probs=33.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCc-EEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDD-ITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~-V~v~e~~~~  180 (240)
                      .+++|+|||+|.+|+..|..|++.|. + |+++++...
T Consensus       211 ~~k~VvVvG~G~sg~e~A~~l~~~~~-~~V~l~~r~~~  247 (447)
T 2gv8_A          211 VGESVLVVGGASSANDLVRHLTPVAK-HPIYQSLLGGG  247 (447)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSC-SSEEEECTTCC
T ss_pred             CCCEEEEEccCcCHHHHHHHHHHHhC-CcEEEEeCCCC
Confidence            57899999999999999999999999 7 999998753

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=94.82  E-value=0.018  Score=52.50  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=32.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      .+++|+|||+|.+|+.+|..|++.  |. +|+++++...
T Consensus       226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~-~Vt~v~r~~~  263 (463)
T 3s5w_A          226 KPMKIAIIGGGQSAAEAFIDLNDSYPSV-QADMILRASA  263 (463)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHCTTE-EEEEECSSSS
T ss_pred             CCCeEEEECCCHhHHHHHHHHHhcCCCC-eEEEEEeCCC
Confidence            478999999999999999999998  88 8999998873

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.69  E-value=0.036  Score=46.88  Aligned_cols=36  Identities=31%  Similarity=0.523  Sum_probs=31.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...++|.|||.|..|.+.|..|++.|+ +|+++++..
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~   52 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDP   52 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            457899999999999999999999999 899999864

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=94.68  E-value=0.035  Score=47.24  Aligned_cols=33  Identities=24%  Similarity=0.431  Sum_probs=30.5

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +|+|||+|..|...|..|++.|+ +|+++++...
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCcc
Confidence            79999999999999999999999 8999998753

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=94.67  E-value=0.025  Score=54.46  Aligned_cols=35  Identities=17%  Similarity=0.273  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHc-CCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRM-GYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~-G~~~V~v~e~~~  179 (240)
                      ...+++|||+|.+|+.+|..|++. |+ +|.|+|+..
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~-~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNI-SVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTC-CEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCC-cEEEEecCC
Confidence            357999999999999999999975 78 799999876

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.65  E-value=0.031  Score=51.24  Aligned_cols=35  Identities=23%  Similarity=0.461  Sum_probs=32.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+.+|+|+|+|.+|+.++..|...|. +|+++|+..
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~  205 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRP  205 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            47899999999999999999999999 899999865

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.65  E-value=0.03  Score=52.18  Aligned_cols=35  Identities=26%  Similarity=0.480  Sum_probs=32.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||.|..|+..|..|+++|+ +|++||++..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~-~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGH-EVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence            4699999999999999999999999 8999998763

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=94.63  E-value=0.036  Score=50.32  Aligned_cols=36  Identities=19%  Similarity=0.361  Sum_probs=32.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+++|+|+|+|.+|+.++..+...|. +|+++|+...
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~  206 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAA  206 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence            57899999999999999999999999 7999998753

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.56  E-value=0.053  Score=50.58  Aligned_cols=79  Identities=19%  Similarity=0.166  Sum_probs=51.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhh--cCCcE
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEK--TAYQW  221 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~--s~~d~  221 (240)
                      ...+|+|+|+|..|...|..|...|+ +|+|+|+++.-     ..+..+..++....|..    -+.+.|.+.  ...|+
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~~-~v~vId~d~~~-----~~~~~~~~~~~~i~Gd~----~~~~~L~~Agi~~ad~   71 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGENN-DITIVDKDGDR-----LRELQDKYDLRVVNGHA----SHPDVLHEAGAQDADM   71 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTTE-EEEEEESCHHH-----HHHHHHHSSCEEEESCT----TCHHHHHHHTTTTCSE
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHH-----HHHHHHhcCcEEEEEcC----CCHHHHHhcCCCcCCE
Confidence            35689999999999999999999999 89999977431     12223345666665552    233334331  23677


Q ss_pred             EEEecccchhh
Q psy16201        222 VYYSNCKVLSN  232 (240)
Q Consensus       222 V~~s~~~~~~~  232 (240)
                      ++..+...-.+
T Consensus        72 ~ia~t~~De~N   82 (461)
T 4g65_A           72 LVAVTNTDETN   82 (461)
T ss_dssp             EEECCSCHHHH
T ss_pred             EEEEcCChHHH
Confidence            66666554333

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.53  E-value=0.041  Score=45.51  Aligned_cols=35  Identities=17%  Similarity=0.312  Sum_probs=30.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...+|+|||+|..|.+.|..|++.|+ +|+++++..
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~~   52 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSKD   52 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            45689999999999999999999999 899999864

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.53  E-value=0.035  Score=48.94  Aligned_cols=34  Identities=15%  Similarity=0.238  Sum_probs=30.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..++|+|||+|..|...|..|+ .|+ +|+++|+.+
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCH
Confidence            4689999999999999999999 999 899999875

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=94.52  E-value=0.02  Score=54.81  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=30.6

Q ss_pred             CeEEEECCChhHHHHHHHHHH-cCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSR-MGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~-~G~~~V~v~e~~~~  180 (240)
                      .+++|||+|.+|+.+|..|++ .|+ +|.|+|+...
T Consensus         3 yD~IIVG~G~aG~v~A~rLse~~~~-~VlllEaG~~   37 (566)
T 3fim_B            3 FDYVVVGAGNAGNVVAARLTEDPDV-SVLVLEAGVS   37 (566)
T ss_dssp             EEEEESCCSTTHHHHHHHHTTSTTC-CEEEECSSBC
T ss_pred             cCEEEECCcHHHHHHHHHHHhCcCC-cEEEEecCCc
Confidence            479999999999999999998 689 7999998753

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.42  E-value=0.038  Score=51.87  Aligned_cols=34  Identities=21%  Similarity=0.465  Sum_probs=31.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||.|..|+..|..|++.|+ +|+++|+..
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            5699999999999999999999999 899999864

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.34  E-value=0.043  Score=48.20  Aligned_cols=33  Identities=18%  Similarity=0.377  Sum_probs=30.7

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||+|..|.+.|..|++.|+ +|+++++..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH-CVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC-EEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCh
Confidence            589999999999999999999999 899999864

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=94.33  E-value=0.031  Score=49.01  Aligned_cols=34  Identities=26%  Similarity=0.584  Sum_probs=28.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+||.|||.|..|...|..|.++|| +|++||+..
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~-~V~v~dr~~   38 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGY-ELVVWNRTA   38 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTC-EEEEC----
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            3589999999999999999999999 899999875

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.32  E-value=0.049  Score=50.89  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=32.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..-.+|+|||.|..||..|..|+++|+ +|+.||-+.
T Consensus        19 ~~m~~IaViGlGYVGLp~A~~~A~~G~-~V~g~Did~   54 (444)
T 3vtf_A           19 SHMASLSVLGLGYVGVVHAVGFALLGH-RVVGYDVNP   54 (444)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCH
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCC-cEEEEECCH
Confidence            345689999999999999999999999 899999764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.32  E-value=0.043  Score=47.11  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=30.4

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||+|..|...|..|++.|+ +|+++++..
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCH
Confidence            489999999999999999999999 899999764

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.20  E-value=0.13  Score=45.02  Aligned_cols=34  Identities=29%  Similarity=0.448  Sum_probs=30.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ..+|.|||.|..|...|..|++.|+.+|+++++.
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4689999999999999999999998459999986

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.18  E-value=0.047  Score=46.66  Aligned_cols=36  Identities=19%  Similarity=0.518  Sum_probs=32.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++|+|||+|-.|..+|..|++.|..+++|+|...
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            367999999999999999999999976799999876

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.17  E-value=0.044  Score=51.04  Aligned_cols=33  Identities=24%  Similarity=0.466  Sum_probs=30.9

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||+|..|+..|..|++.|+ +|+++|+..
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCH
Confidence            589999999999999999999999 899999875

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=94.17  E-value=0.058  Score=52.25  Aligned_cols=26  Identities=38%  Similarity=0.706  Sum_probs=23.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGY  169 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~  169 (240)
                      .+++|+|||+|.+|+.+|..|++.|.
T Consensus       493 ~~~~VvVIGgG~~g~E~A~~l~~~G~  518 (671)
T 1ps9_A          493 VGNKVAIIGCGGIGFDTAMYLSQPGE  518 (671)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSS
T ss_pred             CCCeEEEECCChhHHHHHHHHHhcCC
Confidence            46799999999999999999998874

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.15  E-value=0.041  Score=47.89  Aligned_cols=35  Identities=23%  Similarity=0.315  Sum_probs=32.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .++|.|||.|..|...|..|++.|+ +|++||+...
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT-CEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHH
Confidence            4689999999999999999999999 7999998764

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.12  E-value=0.052  Score=47.23  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|.|||.|..|...|..|++.|+ +|+++++..
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence            4689999999999999999999999 899999864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=94.04  E-value=0.062  Score=44.54  Aligned_cols=35  Identities=26%  Similarity=0.431  Sum_probs=30.5

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...+|+|||+|..|...|..|.+.|+ +|+++++..
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~~   61 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGF-KVVVGSRNP   61 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            45689999999999999999999999 799999764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=94.02  E-value=0.059  Score=48.85  Aligned_cols=36  Identities=25%  Similarity=0.465  Sum_probs=32.7

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|+|+|+|..|+.+|..|...|+ +|+++|+..
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~  201 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINI  201 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            357899999999999999999999999 899999764

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=94.02  E-value=0.05  Score=47.60  Aligned_cols=33  Identities=27%  Similarity=0.523  Sum_probs=30.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||+|-.|.+.|..|++.|+ +|+++++..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE-DVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC-CEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcCc
Confidence            589999999999999999999999 799999864

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=93.97  E-value=0.065  Score=50.24  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=32.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -++|+|||+|..|...|..|++.|+ +|+++|+...
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e   88 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNEQ   88 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcHH
Confidence            4689999999999999999999999 8999998764

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=93.97  E-value=0.012  Score=55.24  Aligned_cols=34  Identities=29%  Similarity=0.379  Sum_probs=27.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCC-------------CcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGY-------------DDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~-------------~~V~v~e~~~  179 (240)
                      .+|+|||+||+||++|..|.+.|.             ..+..||+.+
T Consensus        40 ~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~   86 (501)
T 4b63_A           40 HDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQK   86 (501)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSS
T ss_pred             CcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccC
Confidence            589999999999999999987542             1467788875

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=93.93  E-value=0.063  Score=48.26  Aligned_cols=34  Identities=21%  Similarity=0.443  Sum_probs=31.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +++|+|+|+|.+|+.++..|...|. +|+++++..
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            4899999999999999999999999 899999864

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=93.90  E-value=0.059  Score=48.70  Aligned_cols=37  Identities=24%  Similarity=0.421  Sum_probs=31.9

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .....+|.|||.|..|...|..|++.|+ +|++|++..
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~   55 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNV   55 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            3456799999999999999999999999 899999864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.85  E-value=0.066  Score=48.21  Aligned_cols=35  Identities=23%  Similarity=0.419  Sum_probs=32.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++|+|+|+|..|+.+|..|...|+ +|+++|+..
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~  199 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNH  199 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            46899999999999999999999999 899999764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=93.76  E-value=0.072  Score=46.42  Aligned_cols=36  Identities=14%  Similarity=0.440  Sum_probs=32.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|.|||.|..|..+|..|...|+ +|+++++..
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~  190 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSS  190 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            457899999999999999999999999 899999864

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=93.74  E-value=0.31  Score=42.73  Aligned_cols=35  Identities=17%  Similarity=0.269  Sum_probs=31.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC----CCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG----YDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G----~~~V~v~e~~~~  180 (240)
                      ..+|.|||+|-.|.+.|..|.+.|    + +|+++++...
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~-~V~v~~r~~~   60 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAH-KIMASSPDMD   60 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGG-GEEEECSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcc-eEEEECCCcc
Confidence            458999999999999999999999    8 7999998753

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=93.74  E-value=0.075  Score=46.23  Aligned_cols=36  Identities=17%  Similarity=0.411  Sum_probs=32.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|.|||.|..|..+|..|...|+ +|+++++..
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~  188 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARES  188 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            357899999999999999999999999 899999864

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=93.74  E-value=0.069  Score=49.77  Aligned_cols=35  Identities=20%  Similarity=0.431  Sum_probs=31.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .-++|+|||+|..|...|..|++.|+ +|+++|+..
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~   70 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVGI-SVVAVESDP   70 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            34689999999999999999999999 899999875

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=93.72  E-value=0.063  Score=47.45  Aligned_cols=33  Identities=21%  Similarity=0.332  Sum_probs=30.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ..+|+|||+|-.|.+.|..|++.|+ +|+++++.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGE-AINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTC-CEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-EEEEEECh
Confidence            3589999999999999999999999 79999974

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=93.66  E-value=0.064  Score=47.21  Aligned_cols=33  Identities=30%  Similarity=0.492  Sum_probs=31.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.+||-|..|...|..|.+.|| +|++|++..
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~-~v~v~dr~~   36 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQ   36 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCC-eEEEEcCCH
Confidence            489999999999999999999999 899999875

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=93.66  E-value=0.067  Score=49.57  Aligned_cols=37  Identities=16%  Similarity=0.199  Sum_probs=31.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHH--------------------HcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLS--------------------RMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~--------------------~~G~~~V~v~e~~~~  180 (240)
                      .+++|+|||+|..|+.+|..|+                    +.|.++|+|+++...
T Consensus       144 ~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          144 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            4789999999999999999998                    568746999998763

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=93.61  E-value=0.082  Score=46.21  Aligned_cols=35  Identities=20%  Similarity=0.397  Sum_probs=31.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..++|.|||.|..|...|..|++.|+ +|+++++..
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   42 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSP   42 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            45689999999999999999999999 799999875

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=93.61  E-value=0.079  Score=45.60  Aligned_cols=35  Identities=31%  Similarity=0.421  Sum_probs=31.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++|+|+|+|-.|.+++..|++.|. +|+|+++..
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~  152 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTV  152 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCH
Confidence            46899999999999999999999998 899998764

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=93.60  E-value=0.061  Score=49.50  Aligned_cols=32  Identities=25%  Similarity=0.436  Sum_probs=29.9

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||+|..|+..|..|++.|+ +|+++|+..
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~-~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            79999999999999999999999 899999864

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=93.59  E-value=0.23  Score=44.72  Aligned_cols=36  Identities=14%  Similarity=0.229  Sum_probs=33.2

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|.|||.|..|...|..|...|+ +|+.|++..
T Consensus       162 l~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~  197 (351)
T 3jtm_A          162 LEGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQ  197 (351)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSC
T ss_pred             ccCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCc
Confidence            468999999999999999999999999 899999875

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=93.53  E-value=0.072  Score=46.80  Aligned_cols=33  Identities=18%  Similarity=0.406  Sum_probs=30.4

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||+|..|...|..|++.|+ +|+++++..
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            589999999999999999999999 799999764

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.51  E-value=0.19  Score=41.60  Aligned_cols=73  Identities=10%  Similarity=0.167  Sum_probs=47.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHh--hcCCcE
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISE--KTAYQW  221 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~--~s~~d~  221 (240)
                      ..++|+|+|+|..|...|..|.+.|+  |+++|+++.-     . ..+. .++.+..+..    -+.+.|.+  ....|+
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~~~-----~-~~~~-~~~~~i~gd~----~~~~~l~~a~i~~ad~   74 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV--FVLAEDENVR-----K-KVLR-SGANFVHGDP----TRVSDLEKANVRGARA   74 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGGGH-----H-HHHH-TTCEEEESCT----TCHHHHHHTTCTTCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCHHH-----H-HHHh-cCCeEEEcCC----CCHHHHHhcCcchhcE
Confidence            35689999999999999999998888  8999976431     1 1122 5666665442    23333332  124678


Q ss_pred             EEEecccc
Q psy16201        222 VYYSNCKV  229 (240)
Q Consensus       222 V~~s~~~~  229 (240)
                      |+.++...
T Consensus        75 vi~~~~~d   82 (234)
T 2aef_A           75 VIVDLESD   82 (234)
T ss_dssp             EEECCSCH
T ss_pred             EEEcCCCc
Confidence            88776554

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=93.40  E-value=0.092  Score=51.27  Aligned_cols=40  Identities=23%  Similarity=0.239  Sum_probs=35.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-cccc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DMVT  184 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~~~  184 (240)
                      ...+|+|||+|..|...|..|++.|. +|.++|+++. ||-|
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~-~vl~id~~~~~gg~~   47 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQ-RVLHVDSRSYYGGNW   47 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCGGG
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCC-EEEEEcCCCcccCcc
Confidence            35799999999999999999999999 8999999985 5533

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=93.36  E-value=0.092  Score=43.25  Aligned_cols=37  Identities=16%  Similarity=0.265  Sum_probs=32.1

Q ss_pred             CCCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+++|+|.|+ |..|...+..|+++|+ +|+++.+...
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~   56 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEE   56 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGG
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChH
Confidence            45789999998 8999999999999999 8999998753

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.33  E-value=0.088  Score=48.34  Aligned_cols=35  Identities=20%  Similarity=0.475  Sum_probs=32.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      .+.+|+|+|+|-+|..+|..|...|.++|+++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            57899999999999999999999998679999987

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=93.30  E-value=0.088  Score=45.00  Aligned_cols=36  Identities=19%  Similarity=0.436  Sum_probs=32.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+.+|+|||+|-.|..+|..|++.|..+++|+|...
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            467999999999999999999999987899999765

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=93.27  E-value=0.076  Score=46.24  Aligned_cols=30  Identities=17%  Similarity=0.389  Sum_probs=28.7

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEK  177 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~  177 (240)
                      +|+|||+|..|...|..|++.|+ +|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-eEEEEEc
Confidence            79999999999999999999999 8999998

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=93.25  E-value=0.38  Score=41.50  Aligned_cols=35  Identities=26%  Similarity=0.403  Sum_probs=30.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCC--cEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYD--DITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~--~V~v~e~~~  179 (240)
                      .++|.|||+|-.|.+.|..|.+.|+.  +|++++++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            46899999999999999999999972  599999875

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=93.23  E-value=0.23  Score=43.00  Aligned_cols=38  Identities=13%  Similarity=0.155  Sum_probs=30.5

Q ss_pred             CCCCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        142 DFPDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       142 ~~~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+++|+|.|+ |..|...+..|+++|+ +|+++++...
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~   54 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLRPS   54 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESSCC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCCC
Confidence            356789999998 9999999999999999 7999998764

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=93.22  E-value=0.085  Score=47.52  Aligned_cols=34  Identities=24%  Similarity=0.453  Sum_probs=31.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|..|.+.|..|++.|+ +|+++++.+
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            4689999999999999999999999 799999864

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=93.22  E-value=0.082  Score=49.68  Aligned_cols=34  Identities=21%  Similarity=0.396  Sum_probs=31.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -++|+|||+|..|...|..|++.|+ +|+++|++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~-~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGH-QVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence            3589999999999999999999999 799999875

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=93.19  E-value=0.078  Score=45.96  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=30.6

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||+|-.|.+.|..|++.|+ +|+++++..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLP-HTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCT-TCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEecc
Confidence            589999999999999999999999 799999875

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=93.16  E-value=0.25  Score=43.84  Aligned_cols=38  Identities=13%  Similarity=0.317  Sum_probs=34.1

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .-.+++|.|||.|..|...|..|...|+ +|+.|++...
T Consensus       136 ~l~g~tvGIiG~G~IG~~vA~~l~~~G~-~V~~~dr~~~  173 (315)
T 3pp8_A          136 TREEFSVGIMGAGVLGAKVAESLQAWGF-PLRCWSRSRK  173 (315)
T ss_dssp             CSTTCCEEEECCSHHHHHHHHHHHTTTC-CEEEEESSCC
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCch
Confidence            3568999999999999999999999999 7999998754

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=93.15  E-value=0.19  Score=42.19  Aligned_cols=34  Identities=24%  Similarity=0.408  Sum_probs=29.9

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCC---CcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGY---DDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~---~~V~v~e~~~  179 (240)
                      ++|.|||.|..|...|..|.+.|+   .+|++++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            589999999999999999999997   1499999864

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=93.13  E-value=0.097  Score=46.10  Aligned_cols=34  Identities=15%  Similarity=0.403  Sum_probs=30.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|.|||+|..|.+.|..|++.|+ +|+++++..
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGE-EVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            4589999999999999999999999 899999763

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=93.12  E-value=0.23  Score=42.80  Aligned_cols=38  Identities=16%  Similarity=0.134  Sum_probs=31.3

Q ss_pred             CCCCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        142 DFPDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       142 ~~~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +..+++|+|.|+ |..|...+..|.+.|+ +|+++++...
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   49 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRS   49 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCS
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCc
Confidence            466889999998 8999999999999999 8999998754

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=93.11  E-value=0.098  Score=48.15  Aligned_cols=80  Identities=21%  Similarity=0.228  Sum_probs=53.2

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC-----C-cccccc----------------chHHHhccCceEEe
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT-----Y-DMVTNV----------------SPRIVKGTTSRHLY  200 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~-----~-~~~~~~----------------~~~~~~~~gv~~~~  200 (240)
                      -...+|+|+|+|.+|..+|..|...|.++|+++|+..     + ..+...                +.+.++  +..+..
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~--~ADV~I  263 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALE--GADIFI  263 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHH--TTCSEE
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhc--cCCEEE
Confidence            3467999999999999999999999987899999873     1 111110                111111  234455


Q ss_pred             CCccCcccCHHHHHhhcCCcEEEEe
Q psy16201        201 GPEQGSFLNIELISEKTAYQWVYYS  225 (240)
Q Consensus       201 ~~~vg~~i~~e~L~~~s~~d~V~~s  225 (240)
                      |.+-+.-++-|.++.. ..+.|++.
T Consensus       264 G~Sapgl~T~EmVk~M-a~~pIIfa  287 (398)
T 2a9f_A          264 GVSAPGVLKAEWISKM-AARPVIFA  287 (398)
T ss_dssp             ECCSTTCCCHHHHHTS-CSSCEEEE
T ss_pred             ecCCCCCCCHHHHHhh-CCCCEEEE
Confidence            6655566788877765 35666655

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=93.06  E-value=0.12  Score=45.43  Aligned_cols=35  Identities=23%  Similarity=0.405  Sum_probs=31.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|..|.+.|..|++.|+.+|+++|...
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            46899999999999999999999973499999875

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=93.05  E-value=0.098  Score=45.83  Aligned_cols=36  Identities=17%  Similarity=0.230  Sum_probs=32.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++|+|+|+|.+|.+++..|++.|+.+|+|++|..
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            468999999999999999999999975799998864

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=93.04  E-value=0.1  Score=46.19  Aligned_cols=34  Identities=21%  Similarity=0.376  Sum_probs=30.9

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      |+|+|+|+|..|..+++.+.+.|+ +|.++|.++.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~-~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGM-KVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence            689999999999999999999999 8999997653

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=93.01  E-value=0.11  Score=45.18  Aligned_cols=35  Identities=14%  Similarity=0.350  Sum_probs=32.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +++|+|+|+|-+|.++++.|++.|. +|+|+.|...
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence            7899999999999999999999997 8999998754

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=92.97  E-value=0.085  Score=49.67  Aligned_cols=36  Identities=11%  Similarity=0.521  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|||+|.+|+..|..|++.|. +|+++++.+
T Consensus       184 ~~gk~V~VIG~G~sg~e~a~~l~~~~~-~vtv~~r~~  219 (542)
T 1w4x_A          184 FSGQRVGVIGTGSSGIQVSPQIAKQAA-ELFVFQRTP  219 (542)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBS-EEEEEESSC
T ss_pred             cCCCEEEEECCCccHHHHHHHHhhcCc-eEEEEEcCC
Confidence            357999999999999999999999999 899999876

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=92.94  E-value=0.1  Score=45.85  Aligned_cols=33  Identities=21%  Similarity=0.462  Sum_probs=29.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ...+|+|||+|-.|.+.|..|++.|+ +|+++ +.
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~   50 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGH-EVILI-AR   50 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CC
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-Ec
Confidence            45799999999999999999999999 89999 54

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=92.89  E-value=0.086  Score=45.43  Aligned_cols=35  Identities=17%  Similarity=0.331  Sum_probs=32.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++|+|+|+|-+|.+.+..|++.|. +|+|++|..
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~-~v~v~~R~~  152 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRTF  152 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            46899999999999999999999998 899999874

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=92.80  E-value=0.089  Score=48.92  Aligned_cols=34  Identities=18%  Similarity=0.268  Sum_probs=30.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .-.+|+|||.|..|+..|..|++ |+ +|+++|+..
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G~-~V~~~D~~~   68 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-NH-EVVALDIVQ   68 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-TS-EEEEECSCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-CC-eEEEEecCH
Confidence            34589999999999999999998 99 899999875

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=92.79  E-value=0.24  Score=42.96  Aligned_cols=81  Identities=15%  Similarity=0.082  Sum_probs=46.1

Q ss_pred             CCCCeEEEECC-ChhHHHHHHHHHHcC--CCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCC
Q psy16201        143 FPDTKIALIGC-GPASLSCATFLSRMG--YDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAY  219 (240)
Q Consensus       143 ~~~~~VaViG~-G~~Gl~~a~~L~~~G--~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~  219 (240)
                      ...++|+|.|+ |..|...+..|++.|  + .|+++++.................++.+..+. +...-.++.+.+....
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~-~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~D-l~d~~~~~~~~~~~~~   99 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETY-KIINFDALTYSGNLNNVKSIQDHPNYYFVKGE-IQNGELLEHVIKERDV   99 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTE-EEEEEECCCTTCCGGGGTTTTTCTTEEEEECC-TTCHHHHHHHHHHHTC
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCc-EEEEEeccccccchhhhhhhccCCCeEEEEcC-CCCHHHHHHHHhhcCC
Confidence            34678999999 999999999999999  5 67777766532211111222223456655433 2111123333322247


Q ss_pred             cEEEEe
Q psy16201        220 QWVYYS  225 (240)
Q Consensus       220 d~V~~s  225 (240)
                      |+||-.
T Consensus       100 d~Vih~  105 (346)
T 4egb_A          100 QVIVNF  105 (346)
T ss_dssp             CEEEEC
T ss_pred             CEEEEC
Confidence            888765

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=92.78  E-value=0.14  Score=44.42  Aligned_cols=34  Identities=26%  Similarity=0.519  Sum_probs=31.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|..|...|..|++.|+ +|+++++..
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~   63 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTA   63 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            4689999999999999999999999 799999864

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=92.77  E-value=0.12  Score=46.61  Aligned_cols=36  Identities=28%  Similarity=0.402  Sum_probs=33.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+.+|+|||+|-.|..+|.+|++.|..+++++|...
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            578999999999999999999999988899999765

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=92.76  E-value=0.12  Score=44.35  Aligned_cols=32  Identities=28%  Similarity=0.471  Sum_probs=29.7

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|.|||.|..|...|..|.+.|+ +|+++++..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            69999999999999999999999 799999865

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=92.75  E-value=0.14  Score=45.66  Aligned_cols=35  Identities=20%  Similarity=0.330  Sum_probs=31.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|..|.+.|..|++.|+.+|+++|...
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            46899999999999999999999972499999875

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=92.75  E-value=0.32  Score=42.41  Aligned_cols=81  Identities=14%  Similarity=0.069  Sum_probs=48.2

Q ss_pred             CCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCCccccc-cchHHHhccCceEEeCCccCcccCHHHHHhhcCCcE
Q psy16201        144 PDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTYDMVTN-VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQW  221 (240)
Q Consensus       144 ~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~-~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~  221 (240)
                      ..++|+|.|+ |..|...+..|.+.|+ +|+++.|........ .....+...++.+..+. +...-.+..+.+..+.|.
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~D-l~d~~~l~~~~~~~~~d~   86 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHR-PTYILARPGPRSPSKAKIFKALEDKGAIIVYGL-INEQEAMEKILKEHEIDI   86 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSSCCCHHHHHHHHHHHHTTCEEEECC-TTCHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCCCCChhHHHHHHHHHhCCcEEEEee-cCCHHHHHHHHhhCCCCE
Confidence            3568999999 9999999999999999 799999876221000 00112334567665433 211112333333224787


Q ss_pred             EEEec
Q psy16201        222 VYYSN  226 (240)
Q Consensus       222 V~~s~  226 (240)
                      ||-..
T Consensus        87 Vi~~a   91 (346)
T 3i6i_A           87 VVSTV   91 (346)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            77653

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=92.71  E-value=0.092  Score=46.27  Aligned_cols=34  Identities=32%  Similarity=0.312  Sum_probs=31.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC-CCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG-YDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~  179 (240)
                      ..+|.|||.|..|...|..|++.| + +|+++++..
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~-~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAA-RLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCS-EEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCC-eEEEEeCCC
Confidence            468999999999999999999999 9 899999875

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=92.69  E-value=0.098  Score=46.14  Aligned_cols=38  Identities=18%  Similarity=0.425  Sum_probs=33.7

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -.+.+|+|||+|-.|..+|.+|++.|..+++|+|....
T Consensus        34 L~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~V   71 (292)
T 3h8v_A           34 IRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKV   71 (292)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             HhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            35679999999999999999999999878999997653

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=92.66  E-value=0.089  Score=48.01  Aligned_cols=31  Identities=35%  Similarity=0.420  Sum_probs=28.8

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||.|..|+..|..|++ |+ +|+++|+..
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~-~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QN-EVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TS-EEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CC-EEEEEECCH
Confidence            79999999999999999999 99 899999864

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=92.61  E-value=0.43  Score=42.52  Aligned_cols=37  Identities=11%  Similarity=0.201  Sum_probs=33.8

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .-.+++|.|||.|..|...|..|...|+ +|+.|++..
T Consensus       137 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~  173 (324)
T 3hg7_A          137 GLKGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSG  173 (324)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             ccccceEEEEEECHHHHHHHHHHHhCCC-EEEEEcCCh
Confidence            3568999999999999999999999999 899999875

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=92.58  E-value=0.13  Score=41.86  Aligned_cols=32  Identities=25%  Similarity=0.435  Sum_probs=29.5

Q ss_pred             eEEEEC-CChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIG-CGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG-~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|+| +|..|...+..|++.|+ +|+++++..
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            799999 99999999999999999 899999864

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=92.58  E-value=0.36  Score=41.90  Aligned_cols=37  Identities=8%  Similarity=0.021  Sum_probs=32.6

Q ss_pred             CCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        144 PDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       144 ~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      .+++|+|.|+ |..|...+..|.++|+ +|+++.+....
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~   61 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTG   61 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCC
Confidence            3679999996 9999999999999999 89999987653

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=92.55  E-value=0.1  Score=44.99  Aligned_cols=35  Identities=20%  Similarity=0.391  Sum_probs=31.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++|+|||+|-.|.+.|..|.+.|+ +|+++++..
T Consensus       128 ~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~~  162 (275)
T 2hk9_A          128 KEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRTK  162 (275)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECCH
Confidence            46799999999999999999999999 899999864

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=92.55  E-value=0.15  Score=45.36  Aligned_cols=36  Identities=19%  Similarity=0.363  Sum_probs=32.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|.|||.|..|...|..|...|+ +|+++++..
T Consensus       153 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~  188 (330)
T 2gcg_A          153 LTQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQ  188 (330)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSS
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            467899999999999999999999999 799999764

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=92.52  E-value=0.17  Score=42.88  Aligned_cols=34  Identities=29%  Similarity=0.463  Sum_probs=31.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .++|+|.|+|..|...+..|.+.|+ +|+++.+..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~   36 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGH-EVTGLRRSA   36 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            4689999999999999999999999 799999875

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=92.46  E-value=0.13  Score=44.83  Aligned_cols=34  Identities=29%  Similarity=0.508  Sum_probs=31.1

Q ss_pred             CCeEEEEC-CChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIG-CGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG-~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .++|.||| .|..|.+.|..|++.|+ +|+++++..
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~~   55 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGY-PISILDRED   55 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECCc
Confidence            46899999 99999999999999999 799999765

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=92.44  E-value=0.15  Score=45.42  Aligned_cols=37  Identities=19%  Similarity=0.245  Sum_probs=33.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+++|.|||.|..|...|..|+..|+ +|+++++...
T Consensus       148 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~  184 (334)
T 2dbq_A          148 VYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRK  184 (334)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcc
Confidence            467899999999999999999999999 8999998753

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=92.42  E-value=0.12  Score=44.00  Aligned_cols=32  Identities=25%  Similarity=0.495  Sum_probs=29.1

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.|||+|..|...|..|.+ |+ +|+++++..
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~~   33 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRTF   33 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TS-CEEEECSST
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CC-eEEEEeCCH
Confidence            379999999999999999999 99 799999865

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=92.38  E-value=0.11  Score=48.83  Aligned_cols=35  Identities=17%  Similarity=0.402  Sum_probs=31.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc-CC-CcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM-GY-DDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~-G~-~~V~v~e~~~~  180 (240)
                      -.+|+|||.|..|+..|..|+++ |+ + |+++|+...
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~-V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEK-VLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCE-EEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCe-EEEEECChh
Confidence            35899999999999999999999 99 7 999998765

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=92.34  E-value=0.16  Score=44.37  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=32.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|+|+|-+|.+++..|++.|..+|+|+.|..
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            3578999999999999999999999985599998874

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=92.33  E-value=0.14  Score=43.48  Aligned_cols=32  Identities=28%  Similarity=0.278  Sum_probs=29.5

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|.|||+|..|.+.|..|.+.|+ +|+++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            79999999999999999999999 899998764

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=92.33  E-value=0.14  Score=43.99  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=30.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|.|||.|..|...|..|.+.|+ +|+++++..
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            3589999999999999999999999 899999764

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=92.32  E-value=0.14  Score=46.11  Aligned_cols=37  Identities=19%  Similarity=0.528  Sum_probs=33.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+.+|+|||+|-.|..+|.+|++.|..+++|+|....
T Consensus       117 ~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~V  153 (353)
T 3h5n_A          117 KNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQI  153 (353)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcC
Confidence            4779999999999999999999999878999997653

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=92.32  E-value=0.074  Score=47.33  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=29.9

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||+|..|.+.|..|++.|+ +|+++++..
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~-~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEE-EEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            89999999999999999999999 899999764

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=92.31  E-value=0.13  Score=47.52  Aligned_cols=36  Identities=22%  Similarity=0.405  Sum_probs=31.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHc--------------------CCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRM--------------------GYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~--------------------G~~~V~v~e~~~  179 (240)
                      .+++|+|||+|.+|+.+|..|++.                    |..+|+++++..
T Consensus       146 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~  201 (456)
T 1lqt_A          146 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG  201 (456)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCC
Confidence            578999999999999999999874                    543799999876

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=92.26  E-value=0.12  Score=47.87  Aligned_cols=35  Identities=20%  Similarity=0.396  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+.+..|||.|..|+..|..|+++|| +|++||++.
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~-~V~~~D~~~   44 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGV-DVLGVDINQ   44 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            46789999999999999999999999 899999876

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=92.24  E-value=0.14  Score=43.04  Aligned_cols=32  Identities=25%  Similarity=0.423  Sum_probs=29.5

Q ss_pred             eEEEECCChhHHHHHHHHHHcC-CCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMG-YDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~  179 (240)
                      +|.|||+|..|...|..|++.| + +|+++++..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~-~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGY-RIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSC-EEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCC-eEEEECCCH
Confidence            7999999999999999999999 9 899999764

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=92.22  E-value=0.14  Score=43.95  Aligned_cols=33  Identities=24%  Similarity=0.492  Sum_probs=30.2

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||+|..|...|..|.+.|+ +|+++++..
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            489999999999999999999999 899999764

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=92.18  E-value=0.14  Score=44.51  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=30.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      ..+|+|||+|..|...|..|++.|+. +|+++|+..
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            46899999999999999999999972 499999864

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=92.12  E-value=0.17  Score=43.90  Aligned_cols=37  Identities=16%  Similarity=0.340  Sum_probs=32.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++++|+|+|-+|.++++.|++.|..+|+|+.|..
T Consensus       118 l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          118 LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            4588999999999999999999999964799998764

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=92.09  E-value=0.18  Score=44.87  Aligned_cols=37  Identities=19%  Similarity=0.367  Sum_probs=32.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++++|+|+|-+|.+++..|++.|.++|+|+.|..
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            3578999999999999999999999985699999873

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=92.06  E-value=0.17  Score=44.24  Aligned_cols=37  Identities=19%  Similarity=0.295  Sum_probs=32.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++++|+|+|-+|.++++.|.+.|.++|+|+.|..
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            3578999999999999999999999986799998764

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=92.04  E-value=0.16  Score=47.90  Aligned_cols=34  Identities=15%  Similarity=0.304  Sum_probs=31.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|.|||.|..|...|..|+++|+ +|+++++..
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~dr~~   43 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGF-TVCAYNRTQ   43 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            4589999999999999999999999 799999875

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=92.02  E-value=0.12  Score=47.94  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=30.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRM--GYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~  179 (240)
                      .+|+|||.|..|+..|..|++.  |+ +|+++|+..
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~-~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEI-RVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTS-EEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCC-EEEEEECCH
Confidence            5899999999999999999999  89 799999864

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=92.02  E-value=0.13  Score=48.27  Aligned_cols=35  Identities=17%  Similarity=0.426  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..++|.|||.|..|...|..|+++|+ +|+++++..
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~~r~~   48 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESRGY-TVSIFNRSR   48 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTTTC-CEEEECSSH
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            35689999999999999999999999 799999864

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=92.02  E-value=0.16  Score=48.00  Aligned_cols=36  Identities=19%  Similarity=0.368  Sum_probs=32.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|+|+|+|..|..+|..|+..|. +|+++|+.+
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~  298 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDP  298 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            358999999999999999999999999 899999764

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=92.00  E-value=0.17  Score=45.98  Aligned_cols=36  Identities=14%  Similarity=0.254  Sum_probs=32.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|+|.|..|..+|..|.+.|+ +|+++|+..
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~  206 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNK  206 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            358899999999999999999999999 799999653

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=92.00  E-value=0.16  Score=46.34  Aligned_cols=37  Identities=16%  Similarity=0.320  Sum_probs=32.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|+|+|..|..++..|...|+.+|+++++..
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3578999999999999999999999985699998764

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=91.99  E-value=0.11  Score=45.32  Aligned_cols=36  Identities=25%  Similarity=0.327  Sum_probs=32.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++|+|+|+|-+|.+++..|++.|+++|+|+.|..
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            478999999999999999999999985699998875

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=91.98  E-value=0.16  Score=43.58  Aligned_cols=33  Identities=12%  Similarity=0.219  Sum_probs=30.4

Q ss_pred             CeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|.|||+ |..|...|..|.+.|+ +|+++++..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            58999999 9999999999999999 899999764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=91.96  E-value=0.16  Score=49.99  Aligned_cols=34  Identities=32%  Similarity=0.346  Sum_probs=31.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -++|+|||+|..|...|..|++.|+ +|+++|+..
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~-~V~l~D~~~  345 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNY-PVILKEVNE  345 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTC-CEEEECSSH
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCC-EEEEEECCH
Confidence            3689999999999999999999999 799999875

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=91.94  E-value=0.59  Score=40.91  Aligned_cols=73  Identities=12%  Similarity=0.107  Sum_probs=47.7

Q ss_pred             CCCeEEEECC-ChhHHHHHHHHHHc-CCCcEEEEecCCCccccccchHHHhccCceEEeCCccC-cccCHHHHHhhcCCc
Q psy16201        144 PDTKIALIGC-GPASLSCATFLSRM-GYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQG-SFLNIELISEKTAYQ  220 (240)
Q Consensus       144 ~~~~VaViG~-G~~Gl~~a~~L~~~-G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg-~~i~~e~L~~~s~~d  220 (240)
                      ..++|+|.|+ |..|...+..|.+. |+ +|+++++.....     .......++++..+. +. ..-.++.+.+.  .|
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~-----~~~~~~~~v~~~~~D-l~~d~~~~~~~~~~--~d   93 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRL-----GDLVKHERMHFFEGD-ITINKEWVEYHVKK--CD   93 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTT-----GGGGGSTTEEEEECC-TTTCHHHHHHHHHH--CS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhh-----hhhccCCCeEEEeCc-cCCCHHHHHHHhcc--CC
Confidence            4679999996 99999999999998 99 899999875321     122233566666433 21 11123333333  88


Q ss_pred             EEEEe
Q psy16201        221 WVYYS  225 (240)
Q Consensus       221 ~V~~s  225 (240)
                      .||-.
T Consensus        94 ~Vih~   98 (372)
T 3slg_A           94 VILPL   98 (372)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            88863

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=91.93  E-value=0.13  Score=48.15  Aligned_cols=34  Identities=18%  Similarity=0.316  Sum_probs=30.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~  179 (240)
                      -.+|+|||.|..|+..|..|+++  |+ +|+++|+..
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~-~V~~~D~~~   44 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHI-TVTVVDMNT   44 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTS-EEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCC-EEEEEECCH
Confidence            35899999999999999999998  78 799999764

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=91.92  E-value=0.16  Score=47.93  Aligned_cols=36  Identities=19%  Similarity=0.402  Sum_probs=32.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|+|.|..|..+|..|...|+ +|+++|+..
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~  307 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDP  307 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            458899999999999999999999999 899999764

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=91.90  E-value=0.53  Score=43.09  Aligned_cols=36  Identities=8%  Similarity=0.232  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|.|||.|-.|...|..|...|+ +|.++++..
T Consensus       189 l~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~  224 (393)
T 2nac_A          189 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHR  224 (393)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSC
T ss_pred             CCCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence            468899999999999999999999999 899999865

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=91.89  E-value=0.18  Score=43.96  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=32.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|+|+|-+|.+.+..|++.|+.+|+|+.|..
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            3578999999999999999999999964799999864

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=91.88  E-value=0.2  Score=44.46  Aligned_cols=35  Identities=23%  Similarity=0.397  Sum_probs=31.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|+|||+|..|.+.|..|++.|+.+|+++|....
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            58999999999999999999999834999998763

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=91.84  E-value=0.62  Score=42.03  Aligned_cols=36  Identities=19%  Similarity=0.276  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCc-EEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDD-ITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~-V~v~e~~~  179 (240)
                      -.+++|.|||.|-.|...|..|...|+ + |+++++..
T Consensus       162 l~g~tvgIIG~G~IG~~vA~~l~~~G~-~~V~~~d~~~  198 (364)
T 2j6i_A          162 IEGKTIATIGAGRIGYRVLERLVPFNP-KELLYYDYQA  198 (364)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCC-SEEEEECSSC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCCc
Confidence            468899999999999999999999999 8 99999765

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=91.84  E-value=0.12  Score=46.39  Aligned_cols=34  Identities=12%  Similarity=0.393  Sum_probs=30.7

Q ss_pred             CeEEEECCChhHHHHHHHHHHcC-------CCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMG-------YDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G-------~~~V~v~e~~~~  180 (240)
                      .+|+|||+|..|.+.|..|++.|       + +|+++++...
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~-~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFEN-EVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCS-CEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCC-eEEEEECChh
Confidence            47999999999999999999999       9 7999998654

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=91.82  E-value=0.19  Score=45.02  Aligned_cols=36  Identities=28%  Similarity=0.506  Sum_probs=32.6

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|.|+|+|..|...+..+.+.|+ +|.++|...
T Consensus        12 ~~~k~IlIlG~G~~g~~la~aa~~~G~-~vi~~d~~~   47 (389)
T 3q2o_A           12 LPGKTIGIIGGGQLGRMMALAAKEMGY-KIAVLDPTK   47 (389)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESST
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCC
Confidence            457899999999999999999999999 899999764

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=91.82  E-value=0.18  Score=47.00  Aligned_cols=36  Identities=22%  Similarity=0.438  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|+|+|.|..|..+|..|...|. +|+++|+.+
T Consensus       218 L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp  253 (435)
T 3gvp_A          218 FGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDP  253 (435)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             ecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            468999999999999999999999999 899999764

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=91.80  E-value=0.17  Score=42.53  Aligned_cols=35  Identities=14%  Similarity=0.257  Sum_probs=30.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC----CCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG----YDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G----~~~V~v~e~~~~  180 (240)
                      ..+|.|||+|-.|.+.|..|++.|    + +|+++++...
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~-~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKE-NLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGG-GEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCC-eEEEEeCCcc
Confidence            358999999999999999999999    7 7999998753

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=91.80  E-value=0.2  Score=44.41  Aligned_cols=37  Identities=16%  Similarity=0.399  Sum_probs=32.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++++|+|+|-+|.++++.|++.|.++|+|+.|..
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~  182 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD  182 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            3578999999999999999999999986799999873

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=91.79  E-value=0.096  Score=43.48  Aligned_cols=34  Identities=21%  Similarity=0.224  Sum_probs=30.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEE-EecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITI-YEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v-~e~~~  179 (240)
                      -.+|+|||+|-.|.+.|..|++.|+ +|++ +++..
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~-~V~~v~~r~~   57 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQI-PAIIANSRGP   57 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTC-CEEEECTTCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCCH
Confidence            3689999999999999999999999 7998 88764

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=91.78  E-value=0.19  Score=44.85  Aligned_cols=37  Identities=16%  Similarity=0.322  Sum_probs=33.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+++|.|||.|-.|...|..|...|+ +|+++++...
T Consensus       144 l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~~~  180 (333)
T 2d0i_A          144 LYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRK  180 (333)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCC
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcc
Confidence            467899999999999999999999999 8999998754

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=91.72  E-value=0.18  Score=44.21  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=29.5

Q ss_pred             eEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      +|+|||+|..|.+.|..|++.  |+ +|+++|+...
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~-~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLAR-ELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCS-EEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCC-EEEEEeCChh
Confidence            799999999999999999985  78 7999998753

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=91.72  E-value=0.21  Score=41.45  Aligned_cols=38  Identities=18%  Similarity=0.344  Sum_probs=32.2

Q ss_pred             CCCCCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        141 VDFPDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       141 ~~~~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ....+++|+|.|+ |-.|...|..|+++|+ +|.+.++..
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~   48 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNE   48 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            3467889999998 4679999999999999 899998764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=91.70  E-value=0.17  Score=42.62  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=31.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .++|+|.|+|..|...+..|.++|+ +|+++.+..
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~   38 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNP   38 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcCh
Confidence            3689999999999999999999999 899999865

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=91.69  E-value=0.19  Score=44.60  Aligned_cols=34  Identities=29%  Similarity=0.420  Sum_probs=31.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +++|+|||.|..|.+.|..|.+.|+ +|+++++..
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~   49 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSG   49 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTT
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcC-EEEEEECCh
Confidence            5689999999999999999999999 799999865

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=91.69  E-value=0.2  Score=43.39  Aligned_cols=36  Identities=19%  Similarity=0.500  Sum_probs=31.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++|+|+|+|-+|.++++.|.+.|..+|+|+.|..
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~  153 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV  153 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            357899999999999999999999975799998864

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=91.69  E-value=0.2  Score=44.88  Aligned_cols=34  Identities=15%  Similarity=0.178  Sum_probs=31.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .++|.|||.|..|-+.|..|.+.|+ +|++||+..
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~   41 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSR   41 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            4689999999999999999999999 799999765

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=91.66  E-value=0.14  Score=46.60  Aligned_cols=58  Identities=14%  Similarity=0.101  Sum_probs=38.9

Q ss_pred             CeEEEECCChhH------HHHH----HHHHHcCCCc-----EEEEecCCCcc---------ccccchHHHhccCceEEeC
Q psy16201        146 TKIALIGCGPAS------LSCA----TFLSRMGYDD-----ITIYEKNTYDM---------VTNVSPRIVKGTTSRHLYG  201 (240)
Q Consensus       146 ~~VaViG~G~~G------l~~a----~~L~~~G~~~-----V~v~e~~~~~~---------~~~~~~~~~~~~gv~~~~~  201 (240)
                      .+++|||+|++|      +..|    ..|.+.|. +     |+++++.+..+         ......+.+++.|+++.++
T Consensus       150 ~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~-~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~  228 (437)
T 3sx6_A          150 PGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGM-RDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTN  228 (437)
T ss_dssp             CCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTC-GGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECS
T ss_pred             CCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCC-cccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcC
Confidence            357899997754      5544    67777887 4     99999887421         1223345667889999887


Q ss_pred             Ccc
Q psy16201        202 PEQ  204 (240)
Q Consensus       202 ~~v  204 (240)
                      ..+
T Consensus       229 ~~v  231 (437)
T 3sx6_A          229 CKV  231 (437)
T ss_dssp             EEE
T ss_pred             CEE
Confidence            644

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=91.62  E-value=0.17  Score=44.21  Aligned_cols=33  Identities=30%  Similarity=0.376  Sum_probs=30.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMG--YDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~  179 (240)
                      .+|+|||+|-.|.+.|..|++.|  + +|+++|+..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~-~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVAD-DYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCS-EEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCC-EEEEEcCCH
Confidence            47999999999999999999999  7 799999864

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=91.58  E-value=0.19  Score=47.37  Aligned_cols=34  Identities=18%  Similarity=0.339  Sum_probs=31.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|.|||.|..|...|..|+++|+ +|++|++..
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            3589999999999999999999999 799999876

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=91.57  E-value=0.19  Score=43.98  Aligned_cols=32  Identities=38%  Similarity=0.649  Sum_probs=29.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||+|-.|.+.|..|+ .|+ +|+++++..
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~-~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYH-DVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCC-ceEEEECCH
Confidence            58999999999999999999 999 899999764

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=91.53  E-value=0.64  Score=41.04  Aligned_cols=75  Identities=15%  Similarity=0.117  Sum_probs=46.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHH-cCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcE
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSR-MGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQW  221 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~-~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~  221 (240)
                      +..++++|||+|..|...+..|.. .+..+|+|+++. ..  .....++-...|+.+..       .++++.-+.  .|.
T Consensus       119 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a--~~la~~l~~~~g~~~~~-------~~~~eav~~--aDI  186 (313)
T 3hdj_A          119 PRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-AS--PEILERIGRRCGVPARM-------AAPADIAAQ--ADI  186 (313)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CC--HHHHHHHHHHHTSCEEE-------CCHHHHHHH--CSE
T ss_pred             CCCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HH--HHHHHHHHHhcCCeEEE-------eCHHHHHhh--CCE
Confidence            457899999999999888877766 455489999988 21  11111111123444332       145555444  899


Q ss_pred             EEEecccc
Q psy16201        222 VYYSNCKV  229 (240)
Q Consensus       222 V~~s~~~~  229 (240)
                      |+.++...
T Consensus       187 Vi~aT~s~  194 (313)
T 3hdj_A          187 VVTATRST  194 (313)
T ss_dssp             EEECCCCS
T ss_pred             EEEccCCC
Confidence            88886543

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=91.51  E-value=0.16  Score=43.62  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=29.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++|+|||+|.+|+.+|..|++.|  +|+++.+..
T Consensus       162 ~~~~v~VvG~G~~g~e~a~~l~~~~--~v~~v~~~~  195 (357)
T 4a9w_A          162 AGMRVAIIGGGNSGAQILAEVSTVA--ETTWITQHE  195 (357)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTS--EEEEECSSC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhhC--CEEEEECCC
Confidence            5789999999999999999999987  388888763

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=91.50  E-value=0.2  Score=44.72  Aligned_cols=37  Identities=19%  Similarity=0.415  Sum_probs=33.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+++|.|||.|-.|...|..|...|+ +|+++++...
T Consensus       162 l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~dr~~~  198 (333)
T 3ba1_A          162 FSGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRSKK  198 (333)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCch
Confidence            467899999999999999999999999 7999998753

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=91.45  E-value=0.18  Score=49.65  Aligned_cols=35  Identities=20%  Similarity=0.160  Sum_probs=31.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .-++|+|||+|..|...|..|++.|+ +|+++|+..
T Consensus       313 ~i~kV~VIGaG~MG~~iA~~la~aG~-~V~l~D~~~  347 (715)
T 1wdk_A          313 DVKQAAVLGAGIMGGGIAYQSASKGT-PILMKDINE  347 (715)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             cCCEEEEECCChhhHHHHHHHHhCCC-EEEEEECCH
Confidence            34689999999999999999999999 799999875

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=91.42  E-value=0.24  Score=42.46  Aligned_cols=35  Identities=23%  Similarity=0.415  Sum_probs=31.5

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+ +|+|+|+|-+|.+.++.|.+.|.++|+|++|..
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            46 999999999999999999999986799999864

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=91.40  E-value=0.14  Score=44.07  Aligned_cols=31  Identities=23%  Similarity=0.363  Sum_probs=29.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHc-----C-CCcEEEEec
Q psy16201        146 TKIALIGCGPASLSCATFLSRM-----G-YDDITIYEK  177 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~-----G-~~~V~v~e~  177 (240)
                      .+|+|||+|..|...|..|++.     | + +|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~-~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLL-EVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSE-EEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCC-CEEEEEc
Confidence            4899999999999999999999     9 9 8999987

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=91.33  E-value=0.29  Score=42.35  Aligned_cols=37  Identities=14%  Similarity=0.133  Sum_probs=32.6

Q ss_pred             CCCCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        142 DFPDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       142 ~~~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...+++|+|.|+ |..|...+..|++.|+ +|+++++..
T Consensus        17 ~~~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~~   54 (330)
T 2pzm_A           17 RGSHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNFA   54 (330)
T ss_dssp             TTTCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECCS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            355789999998 8999999999999999 899999854

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=91.31  E-value=0.25  Score=42.56  Aligned_cols=35  Identities=17%  Similarity=0.431  Sum_probs=31.6

Q ss_pred             CCCeEEEEC-CChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIG-CGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG-~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++++|+| +|.+|.+.+..|++.|+ +|+++++..
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~  153 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKL  153 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCH
Confidence            478999999 89999999999999999 799999864

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=91.30  E-value=0.19  Score=45.11  Aligned_cols=36  Identities=17%  Similarity=0.264  Sum_probs=32.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+.+|+|||+|-.|..+|..|++.|..+++|+|...
T Consensus        35 ~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~   70 (346)
T 1y8q_A           35 RASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ   70 (346)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            467999999999999999999999988899998654

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=91.28  E-value=0.23  Score=43.61  Aligned_cols=37  Identities=14%  Similarity=0.356  Sum_probs=33.7

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -.+++|.|||.|..|...|..|...|+ +|++|++...
T Consensus       120 l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~  156 (290)
T 3gvx_A          120 LYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSV  156 (290)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSCC
T ss_pred             eecchheeeccCchhHHHHHHHHhhCc-EEEEEecccc
Confidence            568899999999999999999999999 8999998753

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=91.28  E-value=0.27  Score=43.58  Aligned_cols=35  Identities=23%  Similarity=0.412  Sum_probs=30.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|..|...|..|+..|+.+|+++|...
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            45899999999999999999999973499999775

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=91.25  E-value=0.13  Score=45.40  Aligned_cols=34  Identities=15%  Similarity=0.242  Sum_probs=31.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcC-------CCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMG-------YDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G-------~~~V~v~e~~~~  180 (240)
                      .+|+|||+|..|.+.|..|++.|       + +|+++++...
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~-~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDP-RVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEE-EEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCC-eEEEEEcChh
Confidence            58999999999999999999999       8 7999998754

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=91.21  E-value=0.48  Score=42.15  Aligned_cols=36  Identities=19%  Similarity=0.365  Sum_probs=33.2

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|.|||.|..|...|..|...|+ +|.+|++..
T Consensus       143 l~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~  178 (330)
T 4e5n_A          143 LDNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKA  178 (330)
T ss_dssp             STTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSC
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            468999999999999999999999999 899999875

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=91.19  E-value=0.27  Score=39.48  Aligned_cols=33  Identities=27%  Similarity=0.353  Sum_probs=29.8

Q ss_pred             CeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|.|+ |..|...+..|+++|+ +|+++.|..
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~   34 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNA   34 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCc
Confidence            37999996 9999999999999999 899999875

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=91.13  E-value=0.25  Score=41.99  Aligned_cols=34  Identities=18%  Similarity=0.364  Sum_probs=31.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+ +|+|||+|-.|.+.|..|.+.|+ +|+++++..
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~~  149 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRTP  149 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            46 99999999999999999999999 799999864

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=91.09  E-value=0.2  Score=46.78  Aligned_cols=33  Identities=18%  Similarity=0.340  Sum_probs=30.5

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|.|||.|..|...|..|+++|+ +|+++++..
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~-~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            479999999999999999999999 799999865

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=91.04  E-value=0.2  Score=42.28  Aligned_cols=34  Identities=35%  Similarity=0.626  Sum_probs=30.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCc-EEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDD-ITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~-V~v~e~~~  179 (240)
                      +.+|.|||+|..|...|..|.+.|+ + |+++++..
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~-~~v~~~~~~~   44 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGF-RIVQVYSRTE   44 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCC-eEEEEEeCCH
Confidence            4689999999999999999999999 7 89999764

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=91.03  E-value=0.62  Score=42.21  Aligned_cols=37  Identities=16%  Similarity=0.278  Sum_probs=33.2

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .-.+++|.|||.|..|...|..|...|+ +|..|++..
T Consensus       173 ~l~gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~  209 (365)
T 4hy3_A          173 LIAGSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWL  209 (365)
T ss_dssp             CSSSSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSS
T ss_pred             ccCCCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCC
Confidence            3468999999999999999999999999 899999764

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=91.00  E-value=0.27  Score=43.38  Aligned_cols=38  Identities=16%  Similarity=0.374  Sum_probs=34.0

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+++|.|||.|-.|...|..|...|+ +|+++++...
T Consensus       139 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~  176 (313)
T 2ekl_A          139 ELAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDI  176 (313)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcc
Confidence            3568899999999999999999999999 8999998753

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=90.97  E-value=0.74  Score=39.37  Aligned_cols=35  Identities=14%  Similarity=0.206  Sum_probs=31.0

Q ss_pred             CCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .++|+|+|+ |..|...+..|.+.|+ +|+++.|...
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~   46 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPNS   46 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTTC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCCC
Confidence            358999997 9999999999999999 7999998764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=90.94  E-value=0.22  Score=43.65  Aligned_cols=34  Identities=18%  Similarity=0.331  Sum_probs=29.7

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      .+|+|||+|..|.+.|..|+..|+. +|+++|...
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            3799999999999999999999972 499999764

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=90.93  E-value=0.24  Score=46.05  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|+|+|.|..|..+|..|...|. +|+++|+.+
T Consensus       209 L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p  244 (436)
T 3h9u_A          209 IAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDP  244 (436)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             ccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCh
Confidence            458999999999999999999999999 899999864

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=90.93  E-value=0.2  Score=42.25  Aligned_cols=30  Identities=20%  Similarity=0.375  Sum_probs=28.1

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEK  177 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~  177 (240)
                      +|.|||.|..|...|..|++.|+ +|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~-~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCC-eEEEeCC
Confidence            79999999999999999999999 8999876

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=90.91  E-value=0.89  Score=38.48  Aligned_cols=35  Identities=20%  Similarity=0.336  Sum_probs=31.2

Q ss_pred             CCeEEEECC-ChhHHHHHHHHHHcC-CCcEEEEecCCC
Q psy16201        145 DTKIALIGC-GPASLSCATFLSRMG-YDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~-G~~Gl~~a~~L~~~G-~~~V~v~e~~~~  180 (240)
                      .++|+|.|+ |..|...+..|.+.| + +|+++.+...
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~R~~~   41 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF-KVRVVTRNPR   41 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS-EEEEEESCTT
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc-eEEEEEcCCC
Confidence            578999998 999999999999999 9 8999998754

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=90.91  E-value=0.27  Score=38.88  Aligned_cols=33  Identities=27%  Similarity=0.594  Sum_probs=30.4

Q ss_pred             CeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|+|.|+ |..|...+..|.++|+ +|+++.+..
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeCh
Confidence            68999998 9999999999999999 899999865

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=90.90  E-value=0.28  Score=45.79  Aligned_cols=36  Identities=17%  Similarity=0.221  Sum_probs=31.1

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~  179 (240)
                      ..+|+|+|||+|-+|...+..|++.  +. +|+++=|.+
T Consensus       244 ~~gKrV~VVG~G~SA~ei~~~L~~~~~~~-~v~~~~R~~  281 (501)
T 4b63_A          244 SKPYNIAVLGSGQSAAEIFHDLQKRYPNS-RTTLIMRDS  281 (501)
T ss_dssp             TSCCEEEEECCSHHHHHHHHHHHHHSTTC-EEEEECSSS
T ss_pred             cCCcEEEEECCcHHHHHHHHHHHhcCCCc-eEEEEeCCC
Confidence            5689999999999999999999876  56 799988764

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=90.88  E-value=0.22  Score=41.83  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=30.1

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|.|||.|..|...+..|.+.|+ .|.++++..
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~-~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPH-ELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSC-EEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEECCCH
Confidence            589999999999999999999999 899999764

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=90.87  E-value=0.81  Score=40.68  Aligned_cols=38  Identities=16%  Similarity=0.207  Sum_probs=34.1

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .-.+++|.|||.|..|...|..|...|+ +|++|++...
T Consensus       134 ~l~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~  171 (324)
T 3evt_A          134 TLTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTTGH  171 (324)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             cccCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCCcc
Confidence            3568999999999999999999999999 8999998653

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=90.74  E-value=0.36  Score=41.41  Aligned_cols=36  Identities=14%  Similarity=0.197  Sum_probs=32.1

Q ss_pred             CCCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|.|+ |..|...+..|+++|+ +|+++.+..
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~   45 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSA   45 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            45789999998 9999999999999999 899998753

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=90.72  E-value=0.31  Score=43.21  Aligned_cols=35  Identities=20%  Similarity=0.375  Sum_probs=31.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .++|+|||+|..|.+.|+.|++.|+.+|+++|...
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~   42 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQ   42 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            56899999999999999999999984499999873

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=90.64  E-value=0.3  Score=43.05  Aligned_cols=38  Identities=16%  Similarity=0.272  Sum_probs=33.9

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+++|.|||.|-.|...|..|...|+ +|+++++...
T Consensus       141 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~  178 (311)
T 2cuk_A          141 DLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPK  178 (311)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCCCc
Confidence            3567899999999999999999999999 8999998753

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=90.63  E-value=0.31  Score=42.92  Aligned_cols=37  Identities=22%  Similarity=0.461  Sum_probs=33.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -.+++|.|||.|-.|...|..|...|+ +|+++++...
T Consensus       140 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~  176 (307)
T 1wwk_A          140 LEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPN  176 (307)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cCCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCC
Confidence            568899999999999999999999999 8999998753

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=90.62  E-value=0.24  Score=44.27  Aligned_cols=35  Identities=17%  Similarity=0.138  Sum_probs=31.3

Q ss_pred             CCCCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        143 FPDTKIALIGCG-PASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       143 ~~~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      -.+++|+|||+| ..|..+|..|.++|. .|+++++.
T Consensus       175 l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~  210 (320)
T 1edz_A          175 LYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVN  210 (320)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSS
T ss_pred             CCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCc
Confidence            468999999999 569999999999999 79999875

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=90.59  E-value=0.11  Score=44.25  Aligned_cols=33  Identities=15%  Similarity=0.316  Sum_probs=30.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ..+|.|||.|..|-+.|..|.+.|+ +|+.+++.
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~-~V~~~~~~   38 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGH-YVTVLHAP   38 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTC-EEEECSSG
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCC-EEEEecCH
Confidence            4689999999999999999999999 89999874

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=90.53  E-value=0.33  Score=41.26  Aligned_cols=36  Identities=19%  Similarity=0.202  Sum_probs=31.8

Q ss_pred             CCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..++|+|.|+ |..|...+..|.+.|+ +|+++++...
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   42 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE-EVTVLDDLRV   42 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCSS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCCc
Confidence            3679999999 9999999999999999 7999998654

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=90.53  E-value=0.23  Score=46.51  Aligned_cols=36  Identities=17%  Similarity=0.252  Sum_probs=32.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|+|+|.|..|..+|..|...|. +|+++|..+
T Consensus       245 L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp  280 (464)
T 3n58_A          245 MAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDP  280 (464)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            468999999999999999999999999 899998754

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=90.52  E-value=0.24  Score=46.24  Aligned_cols=33  Identities=12%  Similarity=0.439  Sum_probs=30.2

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|.|||.|..|...|..|+++|+ +|+++++..
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~-~V~v~dr~~   34 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGF-KVAVFNRTY   34 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            379999999999999999999999 799999864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=90.48  E-value=0.33  Score=43.20  Aligned_cols=37  Identities=24%  Similarity=0.318  Sum_probs=31.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+|..|.+.|+.|+..|+.+|+++|....
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            3569999999999999999999999734999998763

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=90.43  E-value=0.28  Score=47.60  Aligned_cols=37  Identities=27%  Similarity=0.381  Sum_probs=33.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+.+|+|||+|-.|..+|.+|++.|..+++++|....
T Consensus       325 ~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~V  361 (615)
T 4gsl_A          325 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV  361 (615)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            5689999999999999999999999889999997653

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=90.42  E-value=0.19  Score=42.89  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=29.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|.|||.|..|...|..|.+.|+ +|++++ ..
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGH-QLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTC-EEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCC-EEEEEc-CH
Confidence            489999999999999999999999 899998 54

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=90.34  E-value=0.35  Score=43.33  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=32.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|.|+|+|..|...+..+.+.|+ +|.++|..+
T Consensus        10 ~~~~~IlIlG~G~lg~~la~aa~~lG~-~viv~d~~~   45 (377)
T 3orq_A           10 KFGATIGIIGGGQLGKMMAQSAQKMGY-KVVVLDPSE   45 (377)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            357899999999999999999999999 899999764

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=90.33  E-value=0.18  Score=45.55  Aligned_cols=30  Identities=13%  Similarity=0.338  Sum_probs=27.7

Q ss_pred             CeEEEECCChhHHHHHHHHHH-cCCCcEEEEe
Q psy16201        146 TKIALIGCGPASLSCATFLSR-MGYDDITIYE  176 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~-~G~~~V~v~e  176 (240)
                      .+|+|||+|..|.+.|..|++ .|+ +|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~-~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGV-EVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTE-EEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCC-EEEEEe
Confidence            379999999999999999988 499 899998

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=90.33  E-value=0.31  Score=45.21  Aligned_cols=36  Identities=22%  Similarity=0.371  Sum_probs=32.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+.+|+|||+|-.|..+|.+|++.|+.+++|+|...
T Consensus        39 ~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~   74 (434)
T 1tt5_B           39 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   74 (434)
T ss_dssp             HTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCB
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            367999999999999999999999988899999765

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=90.26  E-value=0.32  Score=43.13  Aligned_cols=36  Identities=17%  Similarity=0.270  Sum_probs=31.6

Q ss_pred             CCCCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCG-PASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|+|||.| ..|..+|..|.++|. .|+++.+..
T Consensus       163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T  199 (300)
T 4a26_A          163 MAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGT  199 (300)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            468999999965 689999999999999 799999754

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1

Probab=90.25  E-value=0.1  Score=48.55  Aligned_cols=64  Identities=9%  Similarity=-0.024  Sum_probs=46.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEe
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYS  225 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s  225 (240)
                      ..|.|.|.|.+|+  |..|.++|+ +|+++|......     .+.++..|+.+..+..      .+.+.   .+|.|+.|
T Consensus        16 h~i~I~G~G~sgl--A~~l~~~G~-~V~g~D~~~~~~-----~~~L~~~gi~~~~g~~------~~~~~---~~d~vV~s   78 (469)
T 1j6u_A           16 HFVGIGGIGMSAV--ALHEFSNGN-DVYGSNIEETER-----TAYLRKLGIPIFVPHS------ADNWY---DPDLVIKT   78 (469)
T ss_dssp             EEETTTSHHHHHH--HHHHHHTTC-EEEEECSSCCHH-----HHHHHHTTCCEESSCC------TTSCC---CCSEEEEC
T ss_pred             EEEEEcccCHHHH--HHHHHhCCC-EEEEEcCCCCHH-----HHHHHhCCCEEECCCC------HHHCC---CCCEEEEC
Confidence            4677888899998  789999999 899999876432     2356778888876431      12221   38899988


Q ss_pred             c
Q psy16201        226 N  226 (240)
Q Consensus       226 ~  226 (240)
                      .
T Consensus        79 p   79 (469)
T 1j6u_A           79 P   79 (469)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=90.24  E-value=0.34  Score=41.63  Aligned_cols=35  Identities=17%  Similarity=0.294  Sum_probs=31.5

Q ss_pred             CCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +++|+|.|+ |..|...+..|++.|+ +|+++++...
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~   38 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSG   38 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCc
Confidence            578999998 8999999999999999 8999998754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=90.23  E-value=0.35  Score=39.00  Aligned_cols=32  Identities=25%  Similarity=0.378  Sum_probs=29.4

Q ss_pred             eEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|.|+ |..|...+..|+++|+ +|+++.|..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecc
Confidence            6999998 9999999999999999 899998864

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=90.20  E-value=0.29  Score=41.67  Aligned_cols=34  Identities=29%  Similarity=0.433  Sum_probs=29.4

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      ++|.|||+|..|.+.|..|.+.|+. +|+++++..
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            4799999999999999999999972 499998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1gtea1	182	a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase,	3e-46
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	4e-08
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	1e-07
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	4e-07
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	9e-07
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	2e-06
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	3e-06
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	4e-06
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	8e-06
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	9e-06
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	1e-05
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	2e-05
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	2e-05
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	3e-05
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	7e-05
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	9e-05
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	1e-04
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	2e-04
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	6e-04
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	7e-04
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	7e-04
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	0.001
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	0.002
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	0.002
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	0.003
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	0.004
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	0.004

>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 182

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Dihydropyrimidine dehydrogenase, N-terminal domain
domain: Dihydropyrimidine dehydrogenase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  150 bits (379), Expect = 3e-46
 Identities = 104/124 (83%), Positives = 109/124 (87%)

Query: 17  SLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAA 76
            L NNFDDIKHTTL ERGAL+EA RCLKCADAPCQKSCPT +DIKSFITSIS+KNYYGAA
Sbjct: 53  KLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAA 112

Query: 77  KAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRP 136
           K IFSDNPLGLTCGMVCPTSDLC+GGCNLYA EEG INIGGLQQFA+EVFK M I QIR 
Sbjct: 113 KMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRN 172

Query: 137 PDAK 140
           P   
Sbjct: 173 PCLP 176

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 49.8 bits (117), Expect = 4e-08
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM 182
           KIAL+G GPAS+SCA+FL+R+GY DITI+EK  Y  
Sbjct: 6   KIALLGAGPASISCASFLARLGYSDITIFEKQEYVG 41

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKN 178
           +I ++G GPA    A  L +      + IYEK 
Sbjct: 3   QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ 35

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 47.6 bits (111), Expect = 4e-07
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
           ++ ++G G + +S A  LS  G  D+ I E  
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEAT 33

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 46.8 bits (109), Expect = 9e-07
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
           ++A+IG G + L+ A  L   G  ++T++E  
Sbjct: 3   RVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAE 33

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.5 bits (106), Expect = 2e-06
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
            I + G G   LSCA  L + G   +T+ E ++
Sbjct: 3   DILIAGAGIGGLSCALALHQAGIGKVTLLESSS 35

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.7 bits (104), Expect = 3e-06
 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 6/38 (15%)

Query: 147 KIALIGCGPASLSCATFLSRMGYD------DITIYEKN 178
            IA++G GP++   A  L +           + + E  
Sbjct: 4   YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEML 41

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 44.7 bits (104), Expect = 4e-06
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
            +A++G G + L+ A  L   G  D  + E +  
Sbjct: 2   NVAVVGGGISGLAVAHHLRSRGT-DAVLLESSAR 34

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.3 bits (101), Expect = 8e-06
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 135 RPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
           R     + + +T + ++G G A LS A  +S+     + I E++
Sbjct: 23  RYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQS 66

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 9e-06
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
            K+ +IG G + L+ A  L   G  D+T+ E  
Sbjct: 6   GKVIIIGSGVSGLAAARQLQSFGM-DVTLLEAR 37

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
            + ++G G A LS A  L+  G+  +T+ E +  
Sbjct: 32  HVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASER 64

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
            +IA++G   + L+ A  L   G  D+ +YE++ 
Sbjct: 5   DRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP 37

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT 179
           T++A+IG GP+ L     L + G  D  I E+ T
Sbjct: 3   TQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT 35

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 41.7 bits (97), Expect = 3e-05
 Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
           KI ++G G +       L+  G+  + I ++ 
Sbjct: 4   KILIVGAGFSGAVIGRQLAEKGH-QVHIIDQR 34

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 40.8 bits (94), Expect = 7e-05
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 147 KIALIGCGPASLSCATFLSRMGY-DDITIYEKN 178
           KIA+IG GP+ L  A  L      D +T++E+ 
Sbjct: 6   KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR 38

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 9e-05
 Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 148 IALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           + ++G G + ++ A  L   G  ++ + E    
Sbjct: 2   VVVVGGGISGMAAAKLLHDSGL-NVVVLEARDR 33

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 7/86 (8%)

Query: 96  SDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGP 155
              C+        +        +++      + M     +  D    F  + + ++G G 
Sbjct: 7   VTHCLSDIVK-KEDWSDFKFAPIRESTVS--RAMTSRYFKDLD---KFAVSDVIIVGAGS 60

Query: 156 ASLSCATFLSRMGYD-DITIYEKNTY 180
           + LS A  +++   D  + I E +  
Sbjct: 61  SGLSAAYVIAKNRPDLKVCIIESSVA 86

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVT 184
              ++ ++G G   LS A  L+R GY  + I  ++  + V+
Sbjct: 5   SQKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPEDVS 44

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 37.5 bits (85), Expect = 6e-04
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKNTYDM 182
           K+ ++G G    + A ++       ++T+ E NT   
Sbjct: 4   KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYY 40

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 37.8 bits (86), Expect = 7e-04
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
           +I +IG G    + A  L   G+++IT+ ++ 
Sbjct: 3   RIVIIGAGIVGTNLADELVTRGWNNITVLDQG 34

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 37.1 bits (84), Expect = 7e-04
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY 180
           K+ ++G           L  +  D +I  YEK  +
Sbjct: 2   KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF 36

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
              ++G G     CA  L ++    + + EK  +
Sbjct: 3   DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRNH 35

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 148 IALIGCGPASLSCATFLSRMGYDDITIYEKNTY 180
           + ++G G      +  +S  G   +   ++N Y
Sbjct: 9   VIVLGTGLTECILSGIMSVNGK-KVLHMDRNPY 40

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 6/52 (11%)

Query: 147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRH 198
           ++ +IG G   LS A  +    +  +          V   + R    TT+  
Sbjct: 2   RVVVIGAGVIGLSTALCIHERYHSVLQP------LDVKVYADRFTPFTTTDV 47

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 148 IALIGCGPASLSCATFLSRMGYDDITIYEKN 178
           + +IG GP+ L  A   +  G  ++ + +K 
Sbjct: 5   VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKG 34

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 34.8 bits (79), Expect = 0.004
 Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRI 190
            +K+ ++G GPA  + A + +R       +            +  +
Sbjct: 5   HSKLLILGSGPAGYTAAVYAARANL-QPVLITGMEKGGQLTTTTEV 49

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 7/44 (15%)

Query: 135 RPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN 178
           +PP+      +  + ++G G + L     L  +G   + + E  
Sbjct: 3   QPPE------EVDVLVVGAGFSGLYALYRLRELGR-SVHVIETA 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1gtea1	182	Dihydropyrimidine dehydrogenase, N-terminal domain	100.0
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.56
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.34
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	99.26
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.22
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.97
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.83
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.82
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.8
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.74
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.67
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.64
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.64
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.6
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.56
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.54
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.54
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.53
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.48
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.48
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.47
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.47
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.43
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.43
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.42
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.42
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.38
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.34
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.33
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.31
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.31
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.3
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.3
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.27
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.27
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.26
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.26
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.26
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.24
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.24
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.24
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.22
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.21
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.2
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.19
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.19
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.18
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.17
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.17
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.16
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.12
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.1
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.08
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.08
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.07
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.05
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.04
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.03
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.01
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.0
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.98
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	97.94
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	97.91
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.91
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.84
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	97.83
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	97.83
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	97.81
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.79
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.79
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.77
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.73
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	97.7
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.69
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.61
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.58
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.56
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.55
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.53
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	97.51
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.5
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.5
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.48
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.46
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.42
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.39
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	97.36
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.35
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.24
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.21
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.2
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.06
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.95
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.94
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	96.93
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.81
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.74
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.72
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.67
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.61
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.54
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.42
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.39
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	96.3
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.26
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	96.25
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.23
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.17
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	96.16
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.09
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.04
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	96.02
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.9
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.89
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.87
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	95.67
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.67
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.57
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.55
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.53
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.5
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.39
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.32
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.25
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.25
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.22
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.2
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.2
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.2
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.0
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.94
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.9
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.88
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.86
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.86
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.86
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	94.81
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.65
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.53
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.53
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.51
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.42
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.35
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.34
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.32
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	94.19
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.17
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.12
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.06
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	94.06
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.95
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.83
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.8
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	93.66
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	93.6
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.55
d1kf6b1	138	Fumarate reductase {Escherichia coli [TaxId: 562]}	93.54
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.52
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.51
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.42
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.38
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.34
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.25
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.22
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	93.18
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	93.02
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	92.87
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.77
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	92.77
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	92.66
d2bs2b1	133	Fumarate reductase {Wolinella succinogenes [TaxId:	92.63
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.62
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	92.33
d1nekb1	132	Succinate dehydogenase {Escherichia coli [TaxId: 5	92.27
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	92.23
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.09
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	92.06
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	92.04
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	91.98
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	91.97
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	91.97
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	91.92
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	91.89
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	91.84
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	91.7
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	91.46
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	91.34
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.31
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	91.22
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	91.16
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	90.98
d1nekb1	132	Succinate dehydogenase {Escherichia coli [TaxId: 5	90.75
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	90.72
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	90.58
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	90.55
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	90.5
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.09
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	89.87
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	89.8
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	89.68
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	89.48
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	89.37
d1kf6b1	138	Fumarate reductase {Escherichia coli [TaxId: 562]}	89.27
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	89.03
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	89.01
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	88.91
d1bc6a_	77	Ferredoxin {Bacillus schlegelii [TaxId: 1484]}	88.76
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	88.56
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	88.5
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.49
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	88.28
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	88.22
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	88.03
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	88.01
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	87.88
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	87.55
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	87.25
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	87.1
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	86.92
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	86.74
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	86.71
d2bs2b1	133	Fumarate reductase {Wolinella succinogenes [TaxId:	86.63
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	86.35
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	86.23
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	86.13
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	86.05
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	86.02
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	85.93
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	85.88
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	85.87
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	85.77
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	85.76
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	85.67
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	85.61
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	85.54
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	85.28
d1kqfb1	244	Formate dehydrogenase N, iron-sulfur (beta) subuni	85.1
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	85.05
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	85.03
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	84.97
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	84.93
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	84.91
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	84.89
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	84.67
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	84.61
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	84.5
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	84.43
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.42
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.34
d1h98a_	77	Ferredoxin {Thermus thermophilus [TaxId: 274]}	84.3
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	84.23
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	84.09
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	83.74
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	83.53
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	83.36
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	83.32
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	83.23
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	83.14
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	83.06
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	83.05
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	83.03
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	82.99
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	82.88
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	82.87
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	82.86
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	82.83
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	82.78
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	82.73
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	82.43
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	82.37
d7fd1a_	106	Ferredoxin {Azotobacter vinelandii [TaxId: 354]}	82.34
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	82.21
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	82.2
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	81.98
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	81.45
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	81.11
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	81.07
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	81.05
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	81.02
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	80.86
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	80.75
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	80.61
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	80.5
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	80.08
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	80.06

>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Dihydropyrimidine dehydrogenase, N-terminal domain
domain: Dihydropyrimidine dehydrogenase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=7.3e-38  Score=258.77  Aligned_cols=133  Identities=80%  Similarity=1.283  Sum_probs=118.3

Q ss_pred             ccccccccCcccccccCCChhhhHhhhcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCcccccc
Q psy16201         13 FTSCSLVNNFDDIKHTTLSERGALKEASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMV   92 (240)
Q Consensus        13 ~~~~~~~~~f~~~~~~~~~~~~~~~ea~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrv   92 (240)
                      .+..++.++|+|++++++++++++.||+||++|++|||+.+||+|+|||+||++|++|||++|+++|+++||||++||||
T Consensus        49 ~~~~~~~~~f~ei~~~~~~~~~a~~EA~RCl~C~~ppC~~aCP~~~dIp~~i~~i~~g~~~~A~~~i~~~NP~p~icGRV  128 (182)
T d1gtea1          49 FHCEKLENNFDDIKHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMV  128 (182)
T ss_dssp             CCCCCCTTCCCCCCSSCCCHHHHHHHHHHSCCCTTCHHHHTSTTCCCHHHHHHHHHTTCHHHHHHHHHHHCTTHHHHHHH
T ss_pred             CCHHHHhcChhhccCCCCCHHHHHHHHHHhhCCCCCCcCCCCCCCCCHHHHHHHHHcCCHHHHHHHHhccCchHHHHhcc
Confidence            34455789999998899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeE
Q psy16201         93 CPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKI  148 (240)
Q Consensus        93 C~~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~V  148 (240)
                      ||++++||++|+|+...++||+|+.||||++|++++.++..+..|.   .+++++|
T Consensus       129 CP~~~~CE~~C~r~~~~~~pV~I~~LeRfa~D~~~~~~~~~~~~P~---~Pt~kKV  181 (182)
T d1gtea1         129 CPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPC---LPSQEKM  181 (182)
T ss_dssp             CCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHHTCCCCCCTT---SCCGGGS
T ss_pred             CCCcchHHHhCeecCCCCCCeeecHHHHHHHHHHHHcCCCCCCCCC---CCCCCCC
Confidence            9997889999999876567999999999999999988876544442   2445544

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=7.9e-16  Score=126.38  Aligned_cols=121  Identities=14%  Similarity=0.115  Sum_probs=85.0

Q ss_pred             ccCCCCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCC
Q psy16201         91 MVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYD  170 (240)
Q Consensus        91 rvC~~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~  170 (240)
                      |.|..   |+++|..+...+.|+......++..    +..+     |.. +..+.|+|+|||+||+||++|++|+++|| 
T Consensus         2 r~Ci~---C~~~C~~~~~~~~~~~C~~Np~~g~----e~~~-----~~~-~~~~~k~V~IIGaGPAGL~AA~~la~~G~-   67 (179)
T d1ps9a3           2 NTCIG---CNQACLDQIFVGKVTSCLVNPRACH----ETKM-----PIL-PAVQKKNLAVVGAGPAGLAFAINAAARGH-   67 (179)
T ss_dssp             CCCCC---CCTTTHHHHHTTCCCCCSSCTTTTC----TTTS-----CCC-SCSSCCEEEEECCSHHHHHHHHHHHTTTC-
T ss_pred             ccccc---cHHHHhhHhhcCCeeEEeeCccccC----cccc-----ccC-CCCCCcEEEEECccHHHHHHHHHHHhhcc-
Confidence            67885   9999987655567887665544322    1111     111 34668999999999999999999999999 


Q ss_pred             cEEEEecCCCcc-ccc----------------cchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEecccchhh
Q psy16201        171 DITIYEKNTYDM-VTN----------------VSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYSNCKVLSN  232 (240)
Q Consensus       171 ~V~v~e~~~~~~-~~~----------------~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~~~~~  232 (240)
                      +|+|||+.+..| ..+                +..+.++..|+++++|..+..+    ..   ..||+|++++....+.
T Consensus        68 ~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~~----~~---~~~d~vilAtG~~~~~  139 (179)
T d1ps9a3          68 QVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTAD----QL---QAFDETILASGIPNRA  139 (179)
T ss_dssp             EEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCSS----SS---CCSSEEEECCCEECCT
T ss_pred             ceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEccc----cc---ccceeEEEeecCCCcc
Confidence            899999988643 111                1123446789999999986543    22   2499999998765443

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.34  E-value=5.4e-13  Score=110.03  Aligned_cols=81  Identities=20%  Similarity=0.269  Sum_probs=66.6

Q ss_pred             CeEEEECCChhHHHHHHHHHHcC-------CCcEEEEecCCCc-ccccc-c-h-------------HHHhccCceEEeCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMG-------YDDITIYEKNTYD-MVTNV-S-P-------------RIVKGTTSRHLYGP  202 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G-------~~~V~v~e~~~~~-~~~~~-~-~-------------~~~~~~gv~~~~~~  202 (240)
                      ++|+|||+|||||+||++|+++|       + +|+|||+.+.. |++.+ + |             ..+...++++++|+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~-~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDM-AVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCE-EEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCC-ceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            59999999999999999999998       5 69999999863 33321 0 1             23467899999999


Q ss_pred             ccCcccCHHHHHhhcCCcEEEEecccc
Q psy16201        203 EQGSFLNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       203 ~vg~~i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      .++.+++++++...  ||+|++++...
T Consensus        82 ~v~~~~~~~~~~~~--~~~v~~atGa~  106 (239)
T d1lqta2          82 VVGEHVQPGELSER--YDAVIYAVGAQ  106 (239)
T ss_dssp             CBTTTBCHHHHHHH--SSEEEECCCCC
T ss_pred             Eeccccchhhhhcc--ccceeeecCCC
Confidence            99999999999886  99999997643

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.26  E-value=5.9e-12  Score=104.18  Aligned_cols=81  Identities=20%  Similarity=0.302  Sum_probs=65.9

Q ss_pred             CeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCCcc-ccc---------------cchHHHhccCceEEeCCccCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTYDM-VTN---------------VSPRIVKGTTSRHLYGPEQGSF  207 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~~~-~~~---------------~~~~~~~~~gv~~~~~~~vg~~  207 (240)
                      .+|+|||+||+||+||.+|++.  |+ +|+|||+.+..+ ...               .....+...|+.+.++..+|.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   80 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGRD   80 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTTT
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCcc
Confidence            3899999999999999999876  78 799999998643 111               1113446789999999999999


Q ss_pred             cCHHHHHhhcCCcEEEEecccc
Q psy16201        208 LNIELISEKTAYQWVYYSNCKV  229 (240)
Q Consensus       208 i~~e~L~~~s~~d~V~~s~~~~  229 (240)
                      +++++|...  ||+|++++...
T Consensus        81 ~~~~~l~~~--~d~v~~a~Ga~  100 (230)
T d1cjca2          81 VTVQELQDA--YHAVVLSYGAE  100 (230)
T ss_dssp             BCHHHHHHH--SSEEEECCCCC
T ss_pred             ccHHHHHhh--hceEEEEeecc
Confidence            999999876  99999997653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.22  E-value=1e-11  Score=103.73  Aligned_cols=129  Identities=12%  Similarity=0.119  Sum_probs=82.5

Q ss_pred             ccCCCCCchhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHcCCC
Q psy16201         91 MVCPTSDLCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRMGYD  170 (240)
Q Consensus        91 rvC~~~~~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~  170 (240)
                      |.|..   |+..|.+......+  +..+++.....+.+.++.+..   .+.....++|+|||+||+||++|..|+++|+ 
T Consensus         3 r~c~~---c~~c~~~~~~~~~~--~~c~~n~~~~~e~~~~~~p~~---~~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~-   73 (233)
T d1djqa3           3 RVCIG---CNVCISRWEIGGPP--MICTQNATAGEEYRRGWHPEK---FRQTKNKDSVLIVGAGPSGSEAARVLMESGY-   73 (233)
T ss_dssp             CCCCC---CCHHHHHHHHSSSC--CCCSSCTTTTTHHHHCCCSSC---CCCCSSCCEEEEECCSHHHHHHHHHHHHTTC-
T ss_pred             ccchh---hHHHHcccccCCce--eeeecCcccChHHhcCCCCCc---cCcccCCceEEEEcccHHHHHHHHHHHHhcc-
Confidence            67864   88888765433344  445666666666666664321   1234678999999999999999999999999 


Q ss_pred             cEEEEecCCC-ccccccc------------h----HHH---hccCc--eEEeCCccCcccCHHHHHhhcCCcEEEEeccc
Q psy16201        171 DITIYEKNTY-DMVTNVS------------P----RIV---KGTTS--RHLYGPEQGSFLNIELISEKTAYQWVYYSNCK  228 (240)
Q Consensus       171 ~V~v~e~~~~-~~~~~~~------------~----~~~---~~~gv--~~~~~~~vg~~i~~e~L~~~s~~d~V~~s~~~  228 (240)
                      +|+|||+.+. ++.+...            .    ..+   ...++  .+.++.   ..++.+...+. .||+|++++..
T Consensus        74 ~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~d~vviAtG~  149 (233)
T d1djqa3          74 TVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQ---KPMTADDVLQY-GADKVIIATGA  149 (233)
T ss_dssp             EEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTTCEEECSC---CCCCHHHHHTS-CCSEEEECCCE
T ss_pred             ceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhcceeeeeeccc---ccccchhhhhh-ccceeeeccCC
Confidence            8999999885 3322210            0    011   11222  333332   23566665553 69999999876


Q ss_pred             chhh
Q psy16201        229 VLSN  232 (240)
Q Consensus       229 ~~~~  232 (240)
                      ....
T Consensus       150 ~~~~  153 (233)
T d1djqa3         150 SECT  153 (233)
T ss_dssp             ECCH
T ss_pred             Cccc
Confidence            5443

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.97  E-value=9e-10  Score=87.81  Aligned_cols=83  Identities=34%  Similarity=0.606  Sum_probs=60.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-ccc------cc--------hHHHhccCceEEeCCccCcc-
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-VTN------VS--------PRIVKGTTSRHLYGPEQGSF-  207 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-~~~------~~--------~~~~~~~gv~~~~~~~vg~~-  207 (240)
                      .++||+|||+||+||++|.+|+++|++.|+|||+.+..+ .+.      ..        .......+.++.++..++.+ 
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   82 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE   82 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence            478999999999999999999999983499999998633 111      00        11224567788888888864 


Q ss_pred             cCHHHHHhhcCCcEEEEecc
Q psy16201        208 LNIELISEKTAYQWVYYSNC  227 (240)
Q Consensus       208 i~~e~L~~~s~~d~V~~s~~  227 (240)
                      ...+...+. .++.++++..
T Consensus        83 ~~~~~~~~~-~~~~~~ia~g  101 (196)
T d1gtea4          83 ITLNTLKEE-GYKAAFIGIG  101 (196)
T ss_dssp             BCHHHHHHT-TCCEEEECCC
T ss_pred             eeeehhhcc-ccceeeEEec
Confidence            345555543 6888888854

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.83  E-value=1.2e-09  Score=89.24  Aligned_cols=37  Identities=27%  Similarity=0.452  Sum_probs=34.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      +|||+|||+|++||+||+.|+++|+ +|+|||+++..|
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~~~~G   37 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEGKAG   37 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSSSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCCCCCc
Confidence            5899999999999999999999999 899999988644

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.8e-09  Score=88.77  Aligned_cols=39  Identities=28%  Similarity=0.393  Sum_probs=35.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .+..||+|||+|++||+||+.|+++|+ +|+|||++++.|
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~~r~G   41 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVG   41 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSSSSB
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCCCc
Confidence            456789999999999999999999999 899999998754

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.80  E-value=2e-09  Score=90.05  Aligned_cols=40  Identities=25%  Similarity=0.353  Sum_probs=35.8

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+.++|+|||+|++||++|+.|+++|+ +|+|||+.+..|
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~~~G   66 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASERPG   66 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSSSSB
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCCCC
Confidence            3566899999999999999999999999 899999988644

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.74  E-value=4.1e-09  Score=83.46  Aligned_cols=36  Identities=28%  Similarity=0.406  Sum_probs=32.4

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      +|+|||+|++||++|+.|+++|+++|+|||+++..|
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~G   37 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG   37 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence            799999999999999999999963599999998644

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=3.4e-09  Score=91.59  Aligned_cols=77  Identities=12%  Similarity=0.166  Sum_probs=58.7

Q ss_pred             chhhhccccccCCCccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHHc--CCCcEEEE
Q psy16201         98 LCMGGCNLYAAEEGPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSRM--GYDDITIY  175 (240)
Q Consensus        98 ~Ce~~C~r~~~~~~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~  175 (240)
                      .|+..|.+... ..++.|..+++.+....+..++.+..     ....+++|+|||+||+||++|++|+++  |+ +|+||
T Consensus         9 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~g~~g~~~a~~~~~~~~~~-~~~~~   81 (311)
T d2gjca1           9 HCLSDIVKKED-WSDFKFAPIRESTVSRAMTSRYFKDL-----DKFAVSDVIIVGAGSSGLSAAYVIAKNRPDL-KVCII   81 (311)
T ss_dssp             CTTTTTCCSTT-CTTCCCCCCCHHHHHHHHHHHHHHHH-----HHTTEESEEEECCSHHHHHHHHHHHHHCTTS-CEEEE
T ss_pred             hhhhhheeccc-cccceeeechhhHHHHHHHhhhcccc-----ccccCCCEEEECCCHHHHHHHHHHHHhCCCC-eEEEE
Confidence            79999998654 46788998988887665543332111     124567899999999999999999975  99 79999


Q ss_pred             ecCCCc
Q psy16201        176 EKNTYD  181 (240)
Q Consensus       176 e~~~~~  181 (240)
                      |+.+..
T Consensus        82 ~~~~~~   87 (311)
T d2gjca1          82 ESSVAP   87 (311)
T ss_dssp             CSSSSC
T ss_pred             EcCCCC
Confidence            998763

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.64  E-value=1e-08  Score=83.75  Aligned_cols=36  Identities=25%  Similarity=0.344  Sum_probs=33.1

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .+|+|||+|++||++|+.|+++|+ +|+|||+++..|
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~~~~G   36 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGT-DAVLLESSARLG   36 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTC-CEEEECSSSSSB
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCCCC
Confidence            379999999999999999999999 899999988644

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=1.4e-08  Score=80.34  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=34.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      .+..+|+|||+|++||++|+.|+++|+ +|+|+|+++..
T Consensus         3 ~~~yDviViGaG~~Gl~~A~~La~~G~-~V~vlE~~~~~   40 (297)
T d2bcgg1           3 DTDYDVIVLGTGITECILSGLLSVDGK-KVLHIDKQDHY   40 (297)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCC-CEEEEcCCCCC
Confidence            456789999999999999999999999 89999999863

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.56  E-value=3.3e-08  Score=80.51  Aligned_cols=37  Identities=27%  Similarity=0.558  Sum_probs=33.6

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...++|+|||+|++||++|+.|+++|+ +|+|+||...
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~~~   40 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGY-SVHILARDLP   40 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCT
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            456799999999999999999999999 8999998753

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.54  E-value=3.6e-08  Score=81.23  Aligned_cols=36  Identities=28%  Similarity=0.550  Sum_probs=33.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +..||+|||+||+||++|..|+++|+ +|+||||++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            46799999999999999999999999 8999999764

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.54  E-value=6.1e-08  Score=72.38  Aligned_cols=59  Identities=15%  Similarity=0.195  Sum_probs=49.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|+.|+.+|..|++.|. +||++|+.+...      +.....+.+++.|+++++|..+
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v   86 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALA   86 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEE
T ss_pred             CCeEEEECCCccceeeeeeeccccc-EEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEE
Confidence            4799999999999999999999999 899999988632      2334456778899999998865

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.53  E-value=3.4e-08  Score=85.94  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=34.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .|+|+|||||++||++|+.|+++|+ +|+|+|+++..|
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~~iG   38 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRDHIG   38 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCCCCc
Confidence            6899999999999999999999999 899999998744

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.48  E-value=1.3e-07  Score=71.46  Aligned_cols=61  Identities=15%  Similarity=0.225  Sum_probs=49.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCccC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQG  205 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~vg  205 (240)
                      ..++|+|||+|+.|+.+|..|++.|. +||++|+.+...       +.....+.++..|++++++..+-
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~   96 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVE   96 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEE
T ss_pred             CCCEEEEECChHHHHHHHHHhhccce-EEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEE
Confidence            46799999999999999999999999 899999987532       12233456788899999998763

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.48  E-value=1.3e-07  Score=71.44  Aligned_cols=60  Identities=13%  Similarity=0.201  Sum_probs=49.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc-------cccchHHHhccCceEEeCCccC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV-------TNVSPRIVKGTTSRHLYGPEQG  205 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~-------~~~~~~~~~~~gv~~~~~~~vg  205 (240)
                      .++|+|||+|+.|+.+|..|+++|. +|+++|+.+....       .....+.+++.|++++++..+-
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~   96 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVT   96 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESCCEE
T ss_pred             CCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCCEEE
Confidence            5799999999999999999999999 8999999886431       1233456688999999988763

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=1e-07  Score=71.30  Aligned_cols=59  Identities=8%  Similarity=0.226  Sum_probs=48.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|+.|+.+|..|++.|. +|+++|+.+...      +.....+.+++.|++++++..+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v   85 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIP   85 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCE
T ss_pred             CCEEEEECCChhhHHHHHHhhcccc-EEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEE
Confidence            4689999999999999999999999 899999988532      2223446668899999998865

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=5.5e-08  Score=81.82  Aligned_cols=35  Identities=17%  Similarity=0.382  Sum_probs=32.3

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      +|+|||+|++||++|+.|+++|+ +|+|+|+++..|
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~~~~G   35 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGL-NVVVLEARDRVG   35 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTC-CEEEEESSSSSB
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCCCc
Confidence            58999999999999999999999 899999988644

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=1.4e-07  Score=71.30  Aligned_cols=59  Identities=19%  Similarity=0.277  Sum_probs=49.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++++|||+|+.|+.+|..|++.|. +|||+|+.+...      +.....+.+++.|+++++|..+
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v   87 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKV   87 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCc-ceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEE
Confidence            4699999999999999999999999 899999988632      3334456678899999998865

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.43  E-value=1.3e-07  Score=70.48  Aligned_cols=59  Identities=14%  Similarity=0.189  Sum_probs=48.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++++|||+|+.|+.+|..|++.|. +||++|+.+...      +.....+.+++.|++++++..+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V   85 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSV   85 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEE
Confidence            4799999999999999999999999 899999987532      2223445678889999988765

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.42  E-value=1.6e-07  Score=72.02  Aligned_cols=60  Identities=13%  Similarity=0.212  Sum_probs=49.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc-------cccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV-------TNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~-------~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++|+|||+|++|+.+|..|+++|. +|+++|+.+....       .+...+.+++.|+++.+|..+
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v  100 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQV  100 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCE
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecccccccccchhhhhhhhhcccccccEEEeCCeE
Confidence            36799999999999999999999999 8999999886431       223345568899999998865

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.42  E-value=1.8e-07  Score=70.31  Aligned_cols=60  Identities=20%  Similarity=0.279  Sum_probs=49.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCccC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQG  205 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~vg  205 (240)
                      .++|+|||+|+.|+.+|..|++.|. +|+++|+.+...      +.....+.+++.|+.++++..+-
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~~v~   87 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVV   87 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEE
T ss_pred             CCEEEEECCchHHHHHHHHHHhccc-cceeeehhccccccccHHHHHHHHHHHHhCCCEEEECCEEE
Confidence            5799999999999999999999999 899999987532      22234456678899999988653

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.38  E-value=1.5e-07  Score=81.50  Aligned_cols=40  Identities=35%  Similarity=0.431  Sum_probs=34.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC--CCcEEEEecCCC-ccccc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG--YDDITIYEKNTY-DMVTN  185 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G--~~~V~v~e~~~~-~~~~~  185 (240)
                      =|+|+|||+|++||++|..|++.|  + +|+||||++. ||+|.
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~-~v~vfEk~~~iGG~W~   46 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFD-QVTLFERRGSPGGVWN   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCS-EEEEECSSSSSSTTCS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCC-CEEEEECCCCCCCccc
Confidence            479999999999999999998876  6 7999999975 66665

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.34  E-value=2.7e-07  Score=69.45  Aligned_cols=59  Identities=19%  Similarity=0.336  Sum_probs=48.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc-----ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM-----VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~-----~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|++|+.+|..|+++|+ +|+++|+.+...     +.....+.+++.|+++++|..+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v   95 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSEL   95 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccc-eEEEEeccccccCCCHHHHHHHHHHHHHCCcEEEeCCEE
Confidence            4699999999999999999999999 899999987532     2223345667899999998865

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3.3e-07  Score=69.27  Aligned_cols=59  Identities=12%  Similarity=0.193  Sum_probs=49.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++|+|||+|+.|+.+|..|++.|. +|+++++.+...      +.....+.+++.|+++++|..+
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v   86 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQV   86 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc-EEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEE
Confidence            4799999999999999999999999 899999987532      2334456678899999998865

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=1.7e-06  Score=61.90  Aligned_cols=70  Identities=19%  Similarity=0.279  Sum_probs=51.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV  222 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V  222 (240)
                      ..+|+|+|+|.|.+|+++|.+|.++|+ +|+++|.+.......    .+ ..+..+.++.     ...+.+. .  +|.|
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~~~~~~----~~-~~~~~~~~~~-----~~~~~~~-~--~d~v   68 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMTPPGLD----KL-PEAVERHTGS-----LNDEWLM-A--ADLI   68 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSSCTTGG----GS-CTTSCEEESB-----CCHHHHH-H--CSEE
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcCchhHH----HH-hhccceeecc-----cchhhhc-c--CCEE
Confidence            458899999999999999999999999 899999876543222    11 2355566554     3444443 3  8999


Q ss_pred             EEec
Q psy16201        223 YYSN  226 (240)
Q Consensus       223 ~~s~  226 (240)
                      ++|.
T Consensus        69 i~SP   72 (93)
T d2jfga1          69 VASP   72 (93)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            9995

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.31  E-value=1.6e-07  Score=79.33  Aligned_cols=59  Identities=24%  Similarity=0.364  Sum_probs=46.6

Q ss_pred             CccccchhhHHHHHHHHhhCCCcCCCCCCCCCCCCCeEEEECCChhHHHHHHHHHH-cCCCcEEEEecCCC
Q psy16201        111 GPINIGGLQQFATEVFKDMGISQIRPPDAKVDFPDTKIALIGCGPASLSCATFLSR-MGYDDITIYEKNTY  180 (240)
Q Consensus       111 ~pV~I~~l~r~~~~~~~~~~~~~~~~p~~~~~~~~~~VaViG~G~~Gl~~a~~L~~-~G~~~V~v~e~~~~  180 (240)
                      .||....+.|.+.++.++....          ....+|+|||+||+||++|+.|++ .|+ +|+|+|+.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~----------~~e~DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~~~   68 (278)
T d1rp0a1           9 DPIKESIVSREMTRRYMTDMIT----------YAETDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSVS   68 (278)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHH----------HTEEEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSSS
T ss_pred             ecchHHHHhHHHHHhhhccccc----------ccCCCEEEECCCHHHHHHHHHHHHccCC-eEEEEecCCC
Confidence            5788888888877765543211          235689999999999999999987 599 8999999875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.30  E-value=5.5e-07  Score=67.50  Aligned_cols=60  Identities=22%  Similarity=0.359  Sum_probs=49.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++++|||+|+.|+..|..|++.|. +|+++++.+...      +.....+.+++.|++|+++..+
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v   86 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARV   86 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEE
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEE
Confidence            34799999999999999999999999 899999887532      2234456678899999998754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=2.5e-07  Score=79.50  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=32.5

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      +|+|||||++||++|+.|+++|+ +|+|+|+++..|
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~~iG   37 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRNHIG   37 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCCCcc
Confidence            79999999999999999999999 899999998643

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.27  E-value=4e-07  Score=68.71  Aligned_cols=59  Identities=17%  Similarity=0.262  Sum_probs=48.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++++|||+|..|+..|..|++.|. +|||+++.+...      +.....+.+++.|+++++|..+
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v   89 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKV   89 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEE
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCce
Confidence            4799999999999999999999999 899999988532      2223345678899999998865

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=7.1e-07  Score=67.28  Aligned_cols=59  Identities=19%  Similarity=0.298  Sum_probs=47.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-cc----ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DM----VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~----~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++++|||+|+.|+..|..|++.|. +|+|+++... +.    +.....+.+++.|++|++|..+
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v   83 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGL-DVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVP   83 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEESCEE
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCC-eEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEECCEE
Confidence            4689999999999999999999999 7999997642 11    2334456678899999998644

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.26  E-value=2.8e-07  Score=79.59  Aligned_cols=42  Identities=17%  Similarity=0.204  Sum_probs=36.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-ccccc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DMVTN  185 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~~~~  185 (240)
                      +...+|+|||+|++||++|..|.+.|+ +|+|||+++. ||.|.
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~~iGGtW~   47 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGR-SVHVIETAGDVGGVWY   47 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTHHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCC-CEEEEEcCCCcccccc
Confidence            457899999999999999999999999 7999999864 66553

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.26  E-value=4.1e-07  Score=73.05  Aligned_cols=35  Identities=23%  Similarity=0.429  Sum_probs=32.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...+|+|||+||+||+||.+|+|.|. +|+|+|+..
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~-~V~viE~~~   36 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGL-KTALIEKYK   36 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTC-CEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence            46789999999999999999999999 899999865

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.26  E-value=2.7e-07  Score=76.76  Aligned_cols=36  Identities=28%  Similarity=0.561  Sum_probs=33.2

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ..+|+|||+|++||++|+.|+++|+ +|+|+|+.+..
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~~   39 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKKI   39 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCC
Confidence            4689999999999999999999999 89999998753

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.24  E-value=4.6e-07  Score=74.27  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=32.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+||++|+.|+++|+ +|+|+|+.+.
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~-~V~liEk~~~   36 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGNK   36 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            3589999999999999999999999 8999999874

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.24  E-value=3.9e-07  Score=75.65  Aligned_cols=36  Identities=19%  Similarity=0.337  Sum_probs=32.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +..+|+|||+|++|+++|++|+++|+ +|+|+|+...
T Consensus         3 ~~~DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~~   38 (276)
T d1ryia1           3 RHYEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTM   38 (276)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSST
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            34689999999999999999999999 8999999763

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=2.3e-07  Score=73.97  Aligned_cols=38  Identities=18%  Similarity=0.357  Sum_probs=34.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ++++|+|||+||+||++|.+|+|.|. +|+|+|+...++
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~~~~g   41 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGMEKGG   41 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCSSTTG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEeecccc
Confidence            46799999999999999999999999 799999876543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=3.4e-07  Score=73.96  Aligned_cols=38  Identities=13%  Similarity=0.167  Sum_probs=34.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV  183 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~  183 (240)
                      ..+|+|||+||+|+++|..|++.|. +|+|+|+...||.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~~~GGt   39 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQ-KCALIEAKELGGT   39 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC-CEEEEESSCTTHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-EEEEEeccCcCCe
Confidence            4589999999999999999999999 7999999877663

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.21  E-value=7.1e-07  Score=71.87  Aligned_cols=36  Identities=25%  Similarity=0.473  Sum_probs=33.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+||+||++|.++++.|. +|+|+|+...
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~-kV~vie~~~~   37 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRGA   37 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC-cEEEEEecCC
Confidence            35799999999999999999999999 7999998764

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.20  E-value=1.3e-06  Score=64.99  Aligned_cols=60  Identities=10%  Similarity=0.181  Sum_probs=48.9

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ++++|+|||+|+.|+..|..|++.|. +|+++++.+...      +.....+.++..++++.++..+
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v   86 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNV   86 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEE
Confidence            46899999999999999999999999 899999987432      2223456678889999988865

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.19  E-value=6.8e-07  Score=74.61  Aligned_cols=36  Identities=11%  Similarity=0.269  Sum_probs=33.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +..+|+|||+|++|+++|++|+++|+ +|+|+|+...
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~-~V~viE~~~~   37 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFDP   37 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            46789999999999999999999999 8999999764

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=4.8e-07  Score=73.23  Aligned_cols=38  Identities=24%  Similarity=0.406  Sum_probs=34.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC-cc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY-DM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~-~~  182 (240)
                      +..+|+|||+||+|++||.+|++.|+ +|+|+|+.+. ||
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~-kV~lie~~~~~GG   42 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGF-NTACVEKRGKLGG   42 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC-cEEEEEecCCcce
Confidence            45689999999999999999999999 8999998765 44

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.18  E-value=7.1e-07  Score=73.20  Aligned_cols=35  Identities=31%  Similarity=0.535  Sum_probs=31.6

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|+|||+||+||++|..|+++|+.+|+|||+.+.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            48999999999999999999999437999999875

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.17  E-value=6e-07  Score=75.24  Aligned_cols=33  Identities=39%  Similarity=0.698  Sum_probs=31.4

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||+||+||++|..|+++|+ +|+|+||.+
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~   35 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT   35 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            489999999999999999999999 899999986

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.17  E-value=8.2e-07  Score=72.55  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=33.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+||+||++|.+|++.|+ +|+|+|+...
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~-~V~viE~~~~   40 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGL-KVAIVERYKT   40 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSC
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            45789999999999999999999999 8999998764

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.16  E-value=8.1e-07  Score=72.41  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=32.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+||+|+++|.++++.|+ +|.|+|+...
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~-kV~viE~~~~   37 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDK-KVMVLDFVTP   37 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCC-CEEEECCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            5789999999999999999999999 7999998764

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.12  E-value=1.1e-06  Score=70.54  Aligned_cols=37  Identities=27%  Similarity=0.471  Sum_probs=33.9

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+||+||++|.++++.|. +|+|+|+...++
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~-kV~vIEk~~~GG   39 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGNLGG   39 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCTTH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-EEEEEecCCCCc
Confidence            4689999999999999999999999 899999988665

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.10  E-value=1.2e-06  Score=77.81  Aligned_cols=38  Identities=29%  Similarity=0.447  Sum_probs=34.0

Q ss_pred             CCCeEEEECCChhHHHHHHHHHH------cCCCcEEEEecCCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSR------MGYDDITIYEKNTYDM  182 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~------~G~~~V~v~e~~~~~~  182 (240)
                      ...+|+|||+||||+++|+.|+|      +|+ +|+|+||...++
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl-~VlllEK~~~pG   74 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAAHIG   74 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSSSTT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCC-EEEEEcCCCCCC
Confidence            35799999999999999999998      899 899999987654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.08  E-value=3.2e-06  Score=62.66  Aligned_cols=59  Identities=8%  Similarity=0.099  Sum_probs=46.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc---CCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM---GYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~---G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++++|||+|++|+..|..|++.   |. +|+++|+.+...      +.....+.+++.|++++++..+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v   85 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENP   85 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCE
T ss_pred             CCeEEEECCChHHHHHHHHhHhhccccc-ccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEE
Confidence            47999999999999999877654   88 899999987532      2334445678899999998865

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.08  E-value=3.8e-06  Score=62.41  Aligned_cols=59  Identities=10%  Similarity=0.130  Sum_probs=46.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC---CCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG---YDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G---~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++++|||+|+.|+.+|..|.+.|   . +|+++|+.+...      +.....+.+++.|+++++|..+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~-~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v   87 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDG-QVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENP   87 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTC-EEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCE
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCc-EEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEE
Confidence            479999999999999998877654   5 699999987532      2234456678899999999865

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.07  E-value=9.4e-07  Score=70.65  Aligned_cols=34  Identities=24%  Similarity=0.529  Sum_probs=31.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .++|+|||+||+||+||.+|+|.|. +|+|+|+..
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAEL-KPLLFEGWM   38 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCC-cEEEEEeec
Confidence            5799999999999999999999999 799999765

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.05  E-value=2.9e-06  Score=64.17  Aligned_cols=60  Identities=18%  Similarity=0.173  Sum_probs=48.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      ..++++|||+|+.|+..|..+++.|. +|+++|+.+...      +.....+.++..|+.+.++..+
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v   90 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKT   90 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEE
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEE
Confidence            35799999999999999999999999 899999987532      2223345667889999888754

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.04  E-value=1.9e-06  Score=73.10  Aligned_cols=36  Identities=28%  Similarity=0.501  Sum_probs=31.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHH-----HcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLS-----RMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~-----~~G~~~V~v~e~~~~  180 (240)
                      ...+|+|||+||+||++|..|+     +.|+ +|+|||+.+.
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~~   46 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRST   46 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCCC
Confidence            3578999999999999999996     4799 7999999864

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=2.2e-06  Score=67.01  Aligned_cols=33  Identities=21%  Similarity=0.452  Sum_probs=30.7

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||+||+|++||.++++.|. +|+|+|++.
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~-~v~iie~~~   34 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGI-RTGLMGERF   34 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC-CEEEECSST
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCC-eEEEEEEec
Confidence            479999999999999999999999 799999864

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.5e-06  Score=68.58  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=33.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+||+|+++|.++++.|. +|+|+|+...||
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~-kV~vIEk~~~GG   39 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGA-RAAVVESHKLGG   39 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCTTH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC-EEEEEeccCCCC
Confidence            4589999999999999999999999 799999987655

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.00  E-value=2.3e-06  Score=72.42  Aligned_cols=37  Identities=22%  Similarity=0.369  Sum_probs=33.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ....+|+|||+|++||++|+.|+++|+ +|+|+||.+.
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~~   50 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGA-KVILIEKEPV   50 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            346799999999999999999999999 7999999874

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.98  E-value=2.6e-06  Score=68.90  Aligned_cols=37  Identities=22%  Similarity=0.361  Sum_probs=34.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      ..+|+|||+||+|+++|..+++.|. +|+|+|+...||
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~~~GG   41 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQALGG   41 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCTTH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCC
Confidence            5689999999999999999999999 899999987665

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=97.94  E-value=3.4e-06  Score=70.98  Aligned_cols=33  Identities=27%  Similarity=0.529  Sum_probs=30.4

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|+|||+|++|+++|++|+++|..+|+|+||..
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            799999999999999999999953699999985

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=97.91  E-value=3.7e-06  Score=71.77  Aligned_cols=35  Identities=20%  Similarity=0.177  Sum_probs=32.4

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++||++|++|+++|. +|+|+||...
T Consensus         5 ~~DVvVIG~G~AGl~AAl~aa~~G~-~V~liEK~~~   39 (336)
T d2bs2a2           5 YCDSLVIGGGLAGLRAAVATQQKGL-STIVLSLIPV   39 (336)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCG
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCC-CEEEEecCCC
Confidence            3579999999999999999999999 7999999874

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.91  E-value=4.9e-06  Score=63.80  Aligned_cols=36  Identities=22%  Similarity=0.429  Sum_probs=32.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~~  180 (240)
                      +|||+|||+|++|+++|..|.+.|.. +|+++|+.+.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            68999999999999999999998853 7999998874

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.2e-05  Score=61.30  Aligned_cols=59  Identities=19%  Similarity=0.183  Sum_probs=46.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHH----cCCCcEEEEecCCCcc-------ccccchHHHhccCceEEeCCcc
Q psy16201        145 DTKIALIGCGPASLSCATFLSR----MGYDDITIYEKNTYDM-------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~----~G~~~V~v~e~~~~~~-------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++++|||+|++|+.+|..|++    .|. +|+++++.+...       +.+...+.+++.|+++++|..+
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V  106 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIV  106 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEE
Confidence            5699999999999999988853    589 899999987643       1223345678899999998865

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.83  E-value=6.6e-06  Score=68.46  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=33.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCcc
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDM  182 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~  182 (240)
                      .+|+|||+||+|+++|..+++.|. +|.|+|+...||
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~-~V~liE~~~~GG   37 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNA-KVALVEKSRLGG   37 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSTTH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCC
Confidence            479999999999999999999999 899999987665

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=97.83  E-value=6.3e-06  Score=70.39  Aligned_cols=35  Identities=29%  Similarity=0.454  Sum_probs=32.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++||++|+.|+++|+ +|+|+||.+.
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~-~V~llEk~~~   57 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGA-KVILLEKEPI   57 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTC-CEEEECSSSS
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            4689999999999999999999999 7999999874

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=97.81  E-value=6.2e-06  Score=70.54  Aligned_cols=38  Identities=16%  Similarity=0.425  Sum_probs=34.1

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ....+|+|||+|++||++|+.|++.|. +|+|+||.+..
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~~~~   54 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGA-NVILVDKAPFS   54 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCC
Confidence            345689999999999999999999999 89999998753

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.79  E-value=1.8e-05  Score=62.83  Aligned_cols=83  Identities=14%  Similarity=0.185  Sum_probs=54.2

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCCCcc-------------------ccccchHHHhccCceEEeCCccC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNTYDM-------------------VTNVSPRIVKGTTSRHLYGPEQG  205 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~~~~-------------------~~~~~~~~~~~~gv~~~~~~~vg  205 (240)
                      .||+|||+|++|+.+|..|++.+.. +|+++|+.+...                   +.......++..|++++++..+-
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~   80 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeecee
Confidence            3799999999999999999987542 799999876421                   11123445677899988876552


Q ss_pred             c------ccCHHHHHh----hcCCcEEEEeccc
Q psy16201        206 S------FLNIELISE----KTAYQWVYYSNCK  228 (240)
Q Consensus       206 ~------~i~~e~L~~----~s~~d~V~~s~~~  228 (240)
                      .      .+++..+..    .-.||.++++...
T Consensus        81 ~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~  113 (198)
T d1nhpa1          81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGA  113 (198)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             eEeeccccceeeecccccccccccceeeEeecc
Confidence            1      111111111    0138888888654

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.79  E-value=1.2e-05  Score=64.64  Aligned_cols=36  Identities=14%  Similarity=0.205  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +.++|+|||+||+|+++|.++++.|.+.|.|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            356899999999999999999999864699999764

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.77  E-value=1.8e-06  Score=69.59  Aligned_cols=31  Identities=19%  Similarity=0.203  Sum_probs=26.6

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEec
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEK  177 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~  177 (240)
                      .||+|||+|++||++|+.|+++|+ +|+++|+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~-~v~v~e~   31 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYH-SVLQPLD   31 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHT-TTSSSCE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCC-CceEEee
Confidence            379999999999999999999998 5655544

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.73  E-value=1.3e-05  Score=65.72  Aligned_cols=36  Identities=19%  Similarity=0.355  Sum_probs=31.3

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCC--cEEEEecCCCcc
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYD--DITIYEKNTYDM  182 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~--~V~v~e~~~~~~  182 (240)
                      +|+|||+||+|++||.++++.|.+  +|+++|+...||
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG   40 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGG   40 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCc
Confidence            899999999999999999887642  699999987766

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.70  E-value=1.4e-05  Score=65.17  Aligned_cols=37  Identities=11%  Similarity=0.220  Sum_probs=32.3

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +..+|+|||+||+|+++|.++++.|.+.|.|+|+...
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            4678999999999999999999998636999998763

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.69  E-value=2.7e-05  Score=59.72  Aligned_cols=81  Identities=19%  Similarity=0.213  Sum_probs=50.8

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccc------------------cccchHHHhccCceEEeCCccCcc-
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMV------------------TNVSPRIVKGTTSRHLYGPEQGSF-  207 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~------------------~~~~~~~~~~~gv~~~~~~~vg~~-  207 (240)
                      ||+|||+|++|+.+|..|++ +. +|+|+++.+.+..                  .......++..+++++++..+-.. 
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~-~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~   79 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLID   79 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHc-CC-CEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccccc
Confidence            89999999999999999964 78 7999998764321                  111223456678888876644210 


Q ss_pred             ----cCHHHHHhhcCCcEEEEecccch
Q psy16201        208 ----LNIELISEKTAYQWVYYSNCKVL  230 (240)
Q Consensus       208 ----i~~e~L~~~s~~d~V~~s~~~~~  230 (240)
                          +....=.+. .||.++++.....
T Consensus        80 ~~~~~~~~~~~~i-~~D~li~a~G~~~  105 (167)
T d1xhca1          80 RGRKVVITEKGEV-PYDTLVLATGAPN  105 (167)
T ss_dssp             TTTTEEEESSCEE-ECSEEEECCCEEC
T ss_pred             ccccccccccccc-ccceeEEEEEecC
Confidence                000000001 2788888865443

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.61  E-value=1.9e-05  Score=67.28  Aligned_cols=34  Identities=21%  Similarity=0.539  Sum_probs=31.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|||+|++|+++|..|++.|+ +|+|+|+..
T Consensus         4 ~yDviIVGsG~aG~v~A~~La~~G~-kVlvLEaG~   37 (379)
T d2f5va1           4 KYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGE   37 (379)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cccEEEECcCHHHHHHHHHHhhCCC-eEEEEecCC
Confidence            4689999999999999999999999 899999864

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.58  E-value=2.9e-05  Score=66.42  Aligned_cols=36  Identities=28%  Similarity=0.352  Sum_probs=31.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHH----cCCCcEEEEecCCCc
Q psy16201        145 DTKIALIGCGPASLSCATFLSR----MGYDDITIYEKNTYD  181 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~----~G~~~V~v~e~~~~~  181 (240)
                      ..+|+|||+|++||++|..|++    .|. +|+|+||...+
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~-~V~vieK~~~~   60 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGL-KVTLVEKAAVE   60 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTC-CEEEECSSCTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcC-EEEEEeCCCCC
Confidence            4589999999999999999976    699 89999998754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.56  E-value=6.5e-05  Score=57.63  Aligned_cols=60  Identities=13%  Similarity=-0.016  Sum_probs=46.5

Q ss_pred             CCCeEEEE--CCChhHHHHHHHHHHcCCCcEEEEecCCCcc------ccccchHHHhccCceEEeCCcc
Q psy16201        144 PDTKIALI--GCGPASLSCATFLSRMGYDDITIYEKNTYDM------VTNVSPRIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       144 ~~~~VaVi--G~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~------~~~~~~~~~~~~gv~~~~~~~v  204 (240)
                      .++.|+|+  |+|..|+.+|..|+++|. +||++++.+...      ......+.+.+.|++|.++..+
T Consensus        38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v  105 (156)
T d1djqa2          38 IGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFC  105 (156)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSCTTTHHHHTTCHHHHHHHHHHTTCEEEETEEE
T ss_pred             cCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCCccccccchhHHHHHHHHHhhccceEEeccEE
Confidence            35677776  999999999999999999 899999987532      1223345667789999888755

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=1.3e-05  Score=68.87  Aligned_cols=37  Identities=22%  Similarity=0.272  Sum_probs=33.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+..+|+|||+|++||++|..++++|. +|+|+||...
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~~G~-~V~lleK~~~   41 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQSGQ-TCALLSKVFP   41 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHHTTC-CCEEECSSCG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHcCC-eEEEEeCCCC
Confidence            346689999999999999999999999 7999999874

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.53  E-value=4.8e-05  Score=63.08  Aligned_cols=37  Identities=22%  Similarity=0.286  Sum_probs=33.7

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+..+|+|||+|++|+.+|..|++.|. +|+++|+.+.
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~-kv~vve~~~~   76 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWPF   76 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCc
Confidence            456789999999999999999999999 7999999775

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=97.51  E-value=4.3e-05  Score=63.64  Aligned_cols=33  Identities=15%  Similarity=0.388  Sum_probs=30.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ..+|+|||+|++|++||.+++|+|. ++.+++++
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~-ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGV-RVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-cEEEEEec
Confidence            4689999999999999999999999 79999875

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.50  E-value=4.5e-05  Score=59.36  Aligned_cols=34  Identities=18%  Similarity=0.399  Sum_probs=31.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +++|+|||+|..|+..|..|+++|+ +|++|++.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            4799999999999999999999999 899999864

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.50  E-value=4e-05  Score=58.91  Aligned_cols=34  Identities=15%  Similarity=0.305  Sum_probs=32.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .|+|+|||+|..|..+|.+|.+.|+ +|+|+|+..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCh
Confidence            6899999999999999999999999 899999875

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.48  E-value=4.2e-05  Score=65.86  Aligned_cols=32  Identities=22%  Similarity=0.264  Sum_probs=30.1

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .|+|||+|++|+.+|..|+++|+ +|+|+|+..
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~-~VlvLEaG~   35 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGV-QTLMLEMGQ   35 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcC-eEEEEecCC
Confidence            69999999999999999999999 899999853

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.46  E-value=0.00025  Score=50.92  Aligned_cols=72  Identities=22%  Similarity=0.175  Sum_probs=54.7

Q ss_pred             CCCCCCeEEEECCChhHHHH-HHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCC
Q psy16201        141 VDFPDTKIALIGCGPASLSC-ATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAY  219 (240)
Q Consensus       141 ~~~~~~~VaViG~G~~Gl~~-a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~  219 (240)
                      .....++|.+||.|-+|+++ |..|.++|+ .|+-.|......     -+.+.+.|+.+..+..      .+.+.   ..
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~-----~~~L~~~Gi~v~~g~~------~~~i~---~~   68 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVV-----TQRLAQAGAKIYIGHA------EEHIE---GA   68 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHH-----HHHHHHTTCEEEESCC------GGGGT---TC
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChh-----hhHHHHCCCeEEECCc------cccCC---CC
Confidence            44678999999999999987 999999999 899999875432     3455678998877553      12232   38


Q ss_pred             cEEEEecc
Q psy16201        220 QWVYYSNC  227 (240)
Q Consensus       220 d~V~~s~~  227 (240)
                      |.|++|+.
T Consensus        69 d~vV~S~A   76 (96)
T d1p3da1          69 SVVVVSSA   76 (96)
T ss_dssp             SEEEECTT
T ss_pred             CEEEECCC
Confidence            99999963

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.42  E-value=6.5e-05  Score=58.04  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+.+|+|||+|++|+.+|..|++.|. +|+|++..+.
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~-~v~v~~~~~~   37 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDA   37 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCC-ceEEEEecCc
Confidence            36799999999999999999999999 6888776653

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.39  E-value=6.1e-05  Score=64.95  Aligned_cols=33  Identities=24%  Similarity=0.270  Sum_probs=30.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      ..+|+|||+|++|+.+|..|+++|+ +|+|+|+.
T Consensus         7 ~~dvIVVGsG~aG~v~A~rLaeaG~-~VlvLEaG   39 (370)
T d3coxa1           7 RVPALVIGSGYGGAVAALRLTQAGI-PTQIVEMG   39 (370)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4589999999999999999999999 89999985

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=5.8e-05  Score=63.71  Aligned_cols=37  Identities=24%  Similarity=0.316  Sum_probs=31.7

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ....+|+|||+|++||++|..+++.|  +|+|+||.+..
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g--~V~llEK~~~~   41 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH--QVIVLSKGPVT   41 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS--CEEEECSSCTT
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC--CEEEEECCCCC
Confidence            45679999999999999999998766  49999998753

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.35  E-value=0.00028  Score=54.67  Aligned_cols=41  Identities=17%  Similarity=0.320  Sum_probs=35.5

Q ss_pred             CCCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        141 VDFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       141 ~~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      .+..+++|+|||+|-+|+-+|..|.+.|.+.|+++.+.+..
T Consensus        41 ~p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          41 LPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             CCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             cccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            34667899999999999999999999998679999887754

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.24  E-value=0.00014  Score=56.60  Aligned_cols=32  Identities=28%  Similarity=0.385  Sum_probs=27.2

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      .+|+|||+|++|+.+|..|++.|. +++|++..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~-~v~i~~~~   35 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGY-QGLITVVG   35 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEE
T ss_pred             CCEEEECccHHHHHHHHHHHhcCC-ceEEEEEe
Confidence            469999999999999999999998 56666543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.21  E-value=0.00058  Score=49.70  Aligned_cols=73  Identities=14%  Similarity=0.136  Sum_probs=51.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEE
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWV  222 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V  222 (240)
                      -.+++|+|||+|..|..-|..|.+.|. +|+++.......    ........++++....     ...+++.   +++.|
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~~~----~~~~~~~~~i~~~~~~-----~~~~dl~---~~~lv   76 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIPQ----FTVWANEGMLTLVEGP-----FDETLLD---SCWLA   76 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCHH----HHHHHTTTSCEEEESS-----CCGGGGT---TCSEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCChH----HHHHHhcCCceeeccC-----CCHHHhC---CCcEE
Confidence            468999999999999999999999999 899998665432    1222333455555433     3434443   38888


Q ss_pred             EEeccc
Q psy16201        223 YYSNCK  228 (240)
Q Consensus       223 ~~s~~~  228 (240)
                      +.++.+
T Consensus        77 ~~at~d   82 (113)
T d1pjqa1          77 IAATDD   82 (113)
T ss_dssp             EECCSC
T ss_pred             eecCCC
Confidence            888644

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.20  E-value=0.00047  Score=51.18  Aligned_cols=75  Identities=15%  Similarity=0.139  Sum_probs=49.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEe
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYS  225 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s  225 (240)
                      |+++|+|.|..|...|..|.+.|+ +|+++|.++.-      -+.+...+.....+... ..-.++.+. ....++|+.+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~------~~~~~~~~~~~~~gd~~-~~~~l~~a~-i~~a~~vi~~   71 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEK------VNAYASYATHAVIANAT-EENELLSLG-IRNFEYVIVA   71 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHH------HHHTTTTCSEEEECCTT-CTTHHHHHT-GGGCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHH------HHHHHHhCCcceeeecc-cchhhhccC-CccccEEEEE
Confidence            579999999999999999999999 79999986531      11234456666555421 111233221 1136777777


Q ss_pred             cccc
Q psy16201        226 NCKV  229 (240)
Q Consensus       226 ~~~~  229 (240)
                      ..+.
T Consensus        72 ~~~~   75 (134)
T d2hmva1          72 IGAN   75 (134)
T ss_dssp             CCSC
T ss_pred             cCch
Confidence            6554

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00023  Score=60.62  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=31.0

Q ss_pred             CCeEEEECCChhHHHHHHHHHHc--CCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRM--GYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~--G~~~V~v~e~~~~  180 (240)
                      ..+|+|||+|++||++|..+++.  |. +|+|+||...
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~-~V~lleK~~~   41 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNA-KIALISKVYP   41 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTC-CEEEEESSCG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCC-EEEEEECCCC
Confidence            45899999999999999999987  67 7999999763

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.95  E-value=0.0018  Score=47.95  Aligned_cols=76  Identities=16%  Similarity=0.122  Sum_probs=48.8

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhh--cCCcEEE
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEK--TAYQWVY  223 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~--s~~d~V~  223 (240)
                      .+|+|+|+|..|...|..|.+.|+ +|+++|+++.-     ..+.-...+..+..|..    .+.+.|.+.  ...++++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~-----~~~~~~~~~~~vi~Gd~----~~~~~l~~~~i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDI-----CKKASAEIDALVINGDC----TKIKTLEDAGIEDADMYI   70 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHH-----HHHHHHHCSSEEEESCT----TSHHHHHHTTTTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-CcceecCChhh-----hhhhhhhhhhhhccCcc----cchhhhhhcChhhhhhhc
Confidence            379999999999999999999999 89999987531     11222234666665542    233333321  1366766


Q ss_pred             Eecccchh
Q psy16201        224 YSNCKVLS  231 (240)
Q Consensus       224 ~s~~~~~~  231 (240)
                      ..+.....
T Consensus        71 ~~t~~d~~   78 (132)
T d1lssa_          71 AVTGKEEV   78 (132)
T ss_dssp             ECCSCHHH
T ss_pred             ccCCcHHH
Confidence            66554433

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.94  E-value=0.0006  Score=52.44  Aligned_cols=32  Identities=28%  Similarity=0.278  Sum_probs=29.9

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ||.|||.|..|.+.|..|.++|+ +|++||+..
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCc
Confidence            79999999999999999999999 899999864

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=96.93  E-value=0.00035  Score=60.52  Aligned_cols=34  Identities=24%  Similarity=0.455  Sum_probs=31.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|||+|++|+.+|..|++.|+ +|.|+|+..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~-~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCC-eEEEEEccC
Confidence            4689999999999999999999999 899999874

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00055  Score=54.76  Aligned_cols=33  Identities=15%  Similarity=0.324  Sum_probs=31.2

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|+|||+|..|..-|..+++.|+ .|+++|..+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence            699999999999999999999999 899999876

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.74  E-value=0.0014  Score=46.27  Aligned_cols=66  Identities=14%  Similarity=0.058  Sum_probs=49.8

Q ss_pred             CeEEEECCChhHHH-HHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEE
Q psy16201        146 TKIALIGCGPASLS-CATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYY  224 (240)
Q Consensus       146 ~~VaViG~G~~Gl~-~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~  224 (240)
                      .||-+||-|=+|++ .|..|.++|+ +|+-.|.....     ..+.++..|+.+..+...      +.+.   ..|.|++
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~-----~t~~L~~~Gi~i~~gh~~------~~i~---~~d~vV~   66 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETE-----RTAYLRKLGIPIFVPHSA------DNWY---DPDLVIK   66 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCH-----HHHHHHHTTCCEESSCCT------TSCC---CCSEEEE
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCCh-----hHHHHHHCCCeEEeeecc------cccC---CCCEEEE
Confidence            58999999999986 4889999999 89999977533     234588899998765421      1122   3899999


Q ss_pred             ec
Q psy16201        225 SN  226 (240)
Q Consensus       225 s~  226 (240)
                      |+
T Consensus        67 Ss   68 (89)
T d1j6ua1          67 TP   68 (89)
T ss_dssp             CT
T ss_pred             ec
Confidence            95

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.72  E-value=0.00057  Score=54.30  Aligned_cols=34  Identities=21%  Similarity=0.172  Sum_probs=31.3

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      =++|+|||+|..|..-|..++++|+ +|++||..+
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~   37 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGT-PILMKDINE   37 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            3689999999999999999999999 799999876

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00096  Score=50.59  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=31.6

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .||+|||+|..|...|..|++.|+ +|+++++...
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHH
Confidence            389999999999999999999999 8999998775

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00086  Score=53.89  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=31.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      ..++++|||+|++|+.+|..|+++|++ +|+++++.+
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~   39 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDP   39 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            456899999999999999999998874 699998754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.54  E-value=0.001  Score=53.14  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=30.5

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||.|..|+..|..|+++|+ +|+.||.+.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGH-EVIGVDVSS   33 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCH
Confidence            379999999999999999999999 899999764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.42  E-value=0.0018  Score=51.04  Aligned_cols=35  Identities=20%  Similarity=0.425  Sum_probs=32.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +..+|+|+|+|.+|+.++..+.+.|. +|++||.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcH
Confidence            45799999999999999999999999 899999764

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0022  Score=47.74  Aligned_cols=61  Identities=16%  Similarity=0.209  Sum_probs=44.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccch-HHHhccCceEEeCCcc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSP-RIVKGTTSRHLYGPEQ  204 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~-~~~~~~gv~~~~~~~v  204 (240)
                      -.+++|+|||+|-+++..|.+|++..- +|+++-+.+.......+. +......+++.++..+
T Consensus        28 ~~gk~V~VvGgG~sA~~~A~~L~~~a~-~V~li~r~~~~~~~~~~~~~~~~~~~I~v~~~~~v   89 (126)
T d1fl2a2          28 FKGKRVAVIGGGNSGVEAAIDLAGIVE-HVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQT   89 (126)
T ss_dssp             GBTCEEEEECCSHHHHHHHHHHHTTBS-EEEEECSSSSCCSCHHHHHHHHTCTTEEEESSEEE
T ss_pred             cCCceEEEEeCCHHHHHHHHhhhccCC-ceEEEecccccccccccccccccccceeEEcCcce
Confidence            468999999999999999999999877 799998776432222222 2334455777776643

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0022  Score=48.71  Aligned_cols=27  Identities=37%  Similarity=0.634  Sum_probs=24.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGY  169 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~  169 (240)
                      ..+++|+|||+|.+|+.+|..+++.|.
T Consensus        27 ~~gkrVvVIGgG~~g~d~a~~~~r~G~   53 (162)
T d1ps9a2          27 PVGNKVAIIGCGGIGFDTAMYLSQPGE   53 (162)
T ss_dssp             CCCSEEEEECCHHHHHHHHHHHTCCSS
T ss_pred             ccCCceEEEcCchhHHHHHHHHHHcCC
Confidence            457899999999999999999999986

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.26  E-value=0.0021  Score=48.59  Aligned_cols=36  Identities=28%  Similarity=0.511  Sum_probs=32.4

Q ss_pred             CCCeEEEEC-CChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIG-CGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG-~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .-++|+||| .|..|.+.|..|.++|| +|+++|+...
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~   44 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGY-PISILDREDW   44 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCG
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccc
Confidence            346999999 79999999999999999 7999998763

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=96.25  E-value=0.0018  Score=56.60  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=31.7

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC-CCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG-YDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~~  180 (240)
                      ..+++|||+|.+|+.+|..|++.| + +|.|+|+...
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~-~VLlLEaG~~   59 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKI-KVLVIEKGFY   59 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTC-CEEEEESSCC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCC-eEEEEcCCCC
Confidence            479999999999999999999988 7 7999998863

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.23  E-value=0.0026  Score=50.78  Aligned_cols=35  Identities=17%  Similarity=0.299  Sum_probs=32.1

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|+|+|.+|+.++..+.+.|. +|++||.+..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHH
Confidence            4699999999999999999999999 8999997754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.0019  Score=49.04  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=32.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      -.+++|+|||+|..|+.-|..|.+.|. +|+|+...
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap~   45 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPD   45 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            468999999999999999999999999 89999644

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=96.16  E-value=0.002  Score=56.01  Aligned_cols=34  Identities=18%  Similarity=0.270  Sum_probs=30.8

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcC-CCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMG-YDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~  179 (240)
                      ..+++|||+|.+|+.+|..|++.+ + +|.|+|+..
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~~~~-~VLvLEaG~   51 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTENPNI-SVLVIESGS   51 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTC-CEEEEESSC
T ss_pred             eEEEEEECcCHHHHHHHHHHHHCCCC-eEEEECCCC
Confidence            469999999999999999999876 8 799999875

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.09  E-value=0.011  Score=46.04  Aligned_cols=32  Identities=16%  Similarity=0.368  Sum_probs=29.3

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      .+|+|||+|..|.+.|..|+++|+ +|+++.+.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~-~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGN-EVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCC-EEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-EEEEEEec
Confidence            379999999999999999999999 89999764

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0051  Score=45.59  Aligned_cols=37  Identities=22%  Similarity=0.476  Sum_probs=33.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .++++|+|||+|-+++..|.+|++..- +|+++-|.+.
T Consensus        25 ~~~k~V~VvGgGdsA~e~A~~L~~~a~-~V~li~r~~~   61 (126)
T d1trba2          25 YRNQKVAVIGGGNTAVEEALYLSNIAS-EVHLIHRRDG   61 (126)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSS-EEEEECSSSS
T ss_pred             hCCCEEEEECCCHHHHHHHHHHhhcCC-cEEEEeeccc
Confidence            468999999999999999999999887 8999998774

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=96.02  E-value=0.002  Score=55.53  Aligned_cols=35  Identities=20%  Similarity=0.386  Sum_probs=30.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...+++|||+|++|+.+|..|++. + +|.|+|+...
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~-kVLvLEaG~~   59 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-Y-KVLVLERGSL   59 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-S-CEEEECSSBC
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-C-CEEEEecCCC
Confidence            346899999999999999999876 8 7999998863

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.90  E-value=0.0038  Score=47.91  Aligned_cols=33  Identities=30%  Similarity=0.492  Sum_probs=30.8

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.|||.|..|...|..|.++|| +|++||+..
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECch
Confidence            479999999999999999999999 899999875

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.89  E-value=0.0041  Score=48.31  Aligned_cols=34  Identities=18%  Similarity=0.339  Sum_probs=31.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|.|||.|..|...|..|.++|| +|++||+..
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            3589999999999999999999999 899999876

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.87  E-value=0.002  Score=51.23  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=30.4

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|+|||+|..|.+.|..|++.|+ +|+++.++.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecH
Confidence            479999999999999999999999 899998754

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.67  E-value=0.0079  Score=44.94  Aligned_cols=60  Identities=18%  Similarity=0.381  Sum_probs=43.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccc-cchHHHhccCceEEeCCc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTN-VSPRIVKGTTSRHLYGPE  203 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~-~~~~~~~~~gv~~~~~~~  203 (240)
                      -++++|+|||+|-+++..|.+|++.-- +|+++-+.+...... ...+......+.+.++.+
T Consensus        32 frgk~V~VvGgGdsA~e~A~~L~~~a~-~V~li~r~~~~ra~~~~~~~l~~~~nI~v~~~~~   92 (130)
T d1vdca2          32 FRNKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSS   92 (130)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHTTTSS-EEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEE
T ss_pred             hCCCEEEEEcCchHHHHHHHHHhCCCC-cEEEEEeccccccchhhhhccccCCceEEEeccE
Confidence            468999999999999999999988777 899998877543222 222333445566666553

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.67  E-value=0.005  Score=47.07  Aligned_cols=32  Identities=25%  Similarity=0.513  Sum_probs=30.3

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +|.|||.|..|...|..|+++|| +|++||+.+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCc
Confidence            79999999999999999999999 899999875

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.57  E-value=0.0063  Score=47.03  Aligned_cols=33  Identities=12%  Similarity=0.439  Sum_probs=30.5

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|.|||.|..|...|..|.++|| +|++||+..
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGF-KVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCC-eEEEEECCH
Confidence            479999999999999999999999 799999864

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.55  E-value=0.0063  Score=45.81  Aligned_cols=32  Identities=25%  Similarity=0.435  Sum_probs=29.5

Q ss_pred             eEEEE-CCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALI-GCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaVi-G~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ||+|| |+|-.|.+.|..|++.|+ +|+++.|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            79999 679999999999999999 899999875

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.53  E-value=0.0097  Score=45.62  Aligned_cols=38  Identities=18%  Similarity=0.248  Sum_probs=33.5

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+.+||+|||+|-.|.++|+.|+..++.++.++|.+.
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            35678999999999999999999999976899999765

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.50  E-value=0.011  Score=44.73  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=29.4

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ||.|||+|-.|.+.+..|.+.|+ +++++++..
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChH
Confidence            79999999999999999999999 899999764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.39  E-value=0.0087  Score=45.55  Aligned_cols=37  Identities=22%  Similarity=0.299  Sum_probs=32.2

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      .+++||+|||+|-.|.++|+.|+.+|.. ++.+||...
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            3467999999999999999999999843 799999765

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.055  Score=40.29  Aligned_cols=71  Identities=21%  Similarity=0.307  Sum_probs=47.1

Q ss_pred             CCCCeEEEECCCh-----------hHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHH
Q psy16201        143 FPDTKIALIGCGP-----------ASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIE  211 (240)
Q Consensus       143 ~~~~~VaViG~G~-----------~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e  211 (240)
                      ...++|+|+|+||           ++..++..|.+.|+ ++.++.-++.-....      -....++.+..     ++.|
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~-~~iliN~NP~TVstd------~d~aD~lYfeP-----lt~e   72 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY-RVINVNSNPATIMTD------PEMADATYIEP-----IHWE   72 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC-EEEEECSCTTCGGGC------GGGSSEEECSC-----CCHH
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC-eEEEecCchHhhhcC------hhhcceeeeec-----CCHH
Confidence            4568999999997           56778889999999 799998877542111      12344555543     4444


Q ss_pred             H---HHhhcCCcEEEEe
Q psy16201        212 L---ISEKTAYQWVYYS  225 (240)
Q Consensus       212 ~---L~~~s~~d~V~~s  225 (240)
                      .   +.++...|.|+.+
T Consensus        73 ~v~~Ii~~E~pd~il~~   89 (127)
T d1a9xa3          73 VVRKIIEKERPDAVLPT   89 (127)
T ss_dssp             HHHHHHHHHCCSEEECS
T ss_pred             HHHHHHHHhCcCCeEEE
Confidence            4   2233457777766

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.25  E-value=0.008  Score=42.98  Aligned_cols=37  Identities=8%  Similarity=0.047  Sum_probs=30.5

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ...+|+|+|||+|.+|+-.|..|++.+- ++++.-+..
T Consensus        29 ~f~gK~VlVVG~g~Sa~dia~~l~~~ak-~v~~~~~r~   65 (107)
T d2gv8a2          29 LFVGESVLVVGGASSANDLVRHLTPVAK-HPIYQSLLG   65 (107)
T ss_dssp             GGTTCCEEEECSSHHHHHHHHHHTTTSC-SSEEEECTT
T ss_pred             hcCCCeEEEECCCCCHHHHHHHHHHhcC-EEEEEEecC
Confidence            3679999999999999999999998877 566555544

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.014  Score=44.71  Aligned_cols=37  Identities=16%  Similarity=0.316  Sum_probs=31.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+.+|+|+|+|+.|+.++..+..+|..+|++.|+++
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            3467999999999999999999999985699998765

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.22  E-value=0.012  Score=45.47  Aligned_cols=36  Identities=19%  Similarity=0.500  Sum_probs=32.6

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+++|+|+|+|-++.++++.|.+.|+++|+|+.|..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            478999999999999999999999976899998864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.20  E-value=0.013  Score=44.53  Aligned_cols=36  Identities=19%  Similarity=0.259  Sum_probs=31.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+.+|+|+|+|+.|+.++..+..+|. +|+++|+.+
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~   60 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSP   60 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcc-cccccchHH
Confidence            346799999999999999999999999 899999764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.20  E-value=0.0071  Score=47.47  Aligned_cols=32  Identities=34%  Similarity=0.453  Sum_probs=28.2

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|||.|..||..|..|+ +|+ +|+.||-+.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~-~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQN-EVTIVDILP   32 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTS-EEEEECSCH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCC-cEEEEECCH
Confidence            37999999999999998886 699 899999765

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.051  Score=40.56  Aligned_cols=78  Identities=9%  Similarity=0.091  Sum_probs=50.3

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhh--cCCcEEEE
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEK--TAYQWVYY  224 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~--s~~d~V~~  224 (240)
                      +|+|+|.|..|...+..|.+.|+ +|+|+|..+.....  ........++.+..|..    ...+.|.+.  ...++|+.
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~--~~~~~~~~~~~vi~Gd~----~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIK--QLEQRLGDNADVIPGDS----NDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHH--HHHHHHCTTCEEEESCT----TSHHHHHHHTTTTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHH--HHHHhhcCCcEEEEccC----cchHHHHHhccccCCEEEE
Confidence            69999999999999999999999 79999976532100  11122345777777663    233333331  12566777


Q ss_pred             ecccchh
Q psy16201        225 SNCKVLS  231 (240)
Q Consensus       225 s~~~~~~  231 (240)
                      .+.....
T Consensus        78 ~~~~d~~   84 (153)
T d1id1a_          78 LSDNDAD   84 (153)
T ss_dssp             CSSCHHH
T ss_pred             ccccHHH
Confidence            6655443

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.00  E-value=0.015  Score=44.40  Aligned_cols=37  Identities=16%  Similarity=0.290  Sum_probs=32.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+.+|+|+|+|+.|+.++..+...|. +|++++.++.
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~   62 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSR   62 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSST
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccc-cccccccchh
Confidence            357899999999999999998888999 7999998753

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.94  E-value=0.018  Score=43.68  Aligned_cols=36  Identities=17%  Similarity=0.319  Sum_probs=31.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+.+|+|+|+|+.|+.++..+...|. +|.++++.+
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~   61 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDD   61 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchh
Confidence            347799999999999999999988999 899999764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.021  Score=41.43  Aligned_cols=37  Identities=19%  Similarity=0.320  Sum_probs=32.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +...+|.|+|+|--|...|....+.|+ +|.++|....
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~   45 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYAD   45 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence            456699999999999999999999999 8999998753

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.016  Score=44.67  Aligned_cols=36  Identities=31%  Similarity=0.380  Sum_probs=32.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|+|+|-++.++++.|.+.|. +|+|+.|..
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~   51 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTV   51 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchH
Confidence            458999999999999999999999999 799998865

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.86  E-value=0.054  Score=45.04  Aligned_cols=36  Identities=17%  Similarity=0.208  Sum_probs=32.6

Q ss_pred             CCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ++|+|+|.|+ |..|...+..|.++|+ +|.++++...
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~   43 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAP   43 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCC
Confidence            5799999996 8999999999999999 7999998654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.86  E-value=0.016  Score=43.73  Aligned_cols=34  Identities=26%  Similarity=0.417  Sum_probs=30.6

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|+|||+|-.|.++|+.|+.++..++.++|...
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            5999999999999999999999876899999765

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.86  E-value=0.084  Score=38.89  Aligned_cols=37  Identities=24%  Similarity=0.423  Sum_probs=31.1

Q ss_pred             CCCeEEEECCCh-----------hHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        144 PDTKIALIGCGP-----------ASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       144 ~~~~VaViG~G~-----------~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ..++|+|+|+||           ++..++..|.+.|+ ++.++.-++.-
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~-~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY-ETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC-EEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC-eEEEEecChhh
Confidence            467999999997           56778889999999 79999887753

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=94.81  E-value=0.038  Score=45.32  Aligned_cols=77  Identities=13%  Similarity=0.109  Sum_probs=48.7

Q ss_pred             eEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEe
Q psy16201        147 KIALIGC-GPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYS  225 (240)
Q Consensus       147 ~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s  225 (240)
                      ||+|.|+ |..|-.....|.++|+ +|+++|+.................++++..+. +...-.++.+.+...+|.||-.
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~D-i~~~~~l~~~~~~~~~d~Vih~   79 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGD-IRNKNDVTRLITKYMPDSCFHL   79 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHTTCCCEEEECC-TTCHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhccCCcEEEEcc-cCCHHHHHHHHHhcCCceEEee
Confidence            7899988 8999999999999999 89999965443322212222234567776543 2222234444444356888754

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.65  E-value=0.015  Score=45.00  Aligned_cols=37  Identities=16%  Similarity=0.432  Sum_probs=32.2

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+.+|+|+|+|+.|+.++..+...|.++|+++|+++
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCCEEEEECCCccchhheeccccccccccccccccc
Confidence            4578999999999999999999999974689998765

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.53  E-value=0.062  Score=43.21  Aligned_cols=36  Identities=8%  Similarity=0.134  Sum_probs=31.6

Q ss_pred             CCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+||+|+|+ |..|...+..|.++|+ +|+++.|...
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCc
Confidence            3567999997 9999999999999999 7999988754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.53  E-value=0.09  Score=40.43  Aligned_cols=38  Identities=21%  Similarity=0.179  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+..|+|+|+|+.|+.++..+...|..+|.++|..+.
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            45779999999999999999999999657999997653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.51  E-value=0.021  Score=43.28  Aligned_cols=34  Identities=29%  Similarity=0.433  Sum_probs=29.2

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      ++|.|||.|..|.+.|..|.+.|+. +|+.||++.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            4799999999999999999999963 577788764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.42  E-value=0.027  Score=42.67  Aligned_cols=37  Identities=22%  Similarity=0.330  Sum_probs=32.1

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      ..+.||+|||+|-.|.++|+.|+.+|+. ++.++|..+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            4567999999999999999999999864 699999764

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.028  Score=43.66  Aligned_cols=37  Identities=19%  Similarity=0.346  Sum_probs=33.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+++|+|+|+|-+|.++++.|.+.|.+.++|+.|...
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            5789999999999999999999999878999998754

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.34  E-value=0.023  Score=43.13  Aligned_cols=34  Identities=29%  Similarity=0.379  Sum_probs=30.0

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      +||+|||+|-.|.++|+.|..+|.. ++.++|...
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            7999999999999999999998843 799999764

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.32  E-value=0.031  Score=42.57  Aligned_cols=35  Identities=23%  Similarity=0.412  Sum_probs=31.5

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +.||+|||+|-.|.++|+.|.+.+..++.+||...
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            46999999999999999999999977899999765

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.088  Score=40.71  Aligned_cols=36  Identities=22%  Similarity=0.366  Sum_probs=33.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+|.|+|+|-|..|-.+|..|+..|. +|+++|..+
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp   57 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDP   57 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             ecCCEEEEeccccccHHHHHHHHhCCC-eeEeeeccc
Confidence            458999999999999999999999999 899999877

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.17  E-value=0.03  Score=42.59  Aligned_cols=36  Identities=17%  Similarity=0.328  Sum_probs=31.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+.+|+|+|+|+.|+.++..+...|. ++++++...
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~   64 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSE   64 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSG
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccc-cchhhccch
Confidence            458899999999999999999988999 788888765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.12  E-value=0.029  Score=43.31  Aligned_cols=37  Identities=16%  Similarity=0.085  Sum_probs=31.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+.+|+|+|+|+.|+.++..+...|..+|++.|..+
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            3577999999999999999999889975699998764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.06  E-value=0.023  Score=42.65  Aligned_cols=33  Identities=18%  Similarity=0.324  Sum_probs=30.4

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ||.|||.|-.|...|..|+++|+ +|+++++...
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCTTCC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCchh
Confidence            79999999999999999999999 7999987654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=94.06  E-value=0.03  Score=42.88  Aligned_cols=35  Identities=17%  Similarity=0.338  Sum_probs=31.7

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      .+++|+|||+|-.|...+.+|..+|+.+++|+-|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            58899999999999999999999998569999876

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.95  E-value=0.038  Score=42.73  Aligned_cols=37  Identities=24%  Similarity=0.233  Sum_probs=31.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+..|+|+|+|+.|+.++..+...|...|.+.|..+
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            4578999999999999999999999985577788765

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.83  E-value=0.036  Score=41.62  Aligned_cols=35  Identities=17%  Similarity=0.361  Sum_probs=31.1

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+.+|+|.|+|+.|+.++..+...|. +|++++..+
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCH
Confidence            47799999999999999999999999 799998654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.80  E-value=0.035  Score=44.29  Aligned_cols=36  Identities=19%  Similarity=0.246  Sum_probs=32.4

Q ss_pred             CCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+||+|+|+ |..|-..+..|.+.|+ +|+++.|...
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~   38 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH-PTFLLVREST   38 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCc
Confidence            3679999998 9999999999999999 7999998764

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.66  E-value=0.033  Score=43.41  Aligned_cols=36  Identities=11%  Similarity=0.521  Sum_probs=30.7

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+|+|+|||+|-+|.-+|..|++.+. +++++=+..
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~-~~~~~~~~~   65 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAA-ELFVFQRTP   65 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBS-EEEEEESSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhc-ccccccccc
Confidence            578999999999999999999999998 566665443

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.60  E-value=0.11  Score=42.54  Aligned_cols=34  Identities=18%  Similarity=0.200  Sum_probs=31.0

Q ss_pred             CeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      |+|.|.|+ |..|-..+..|.++|| +|..+++...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCC
Confidence            68999999 8999999999999999 8999998764

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.032  Score=45.18  Aligned_cols=37  Identities=19%  Similarity=0.494  Sum_probs=33.2

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+++|+|||+|-.|-.+|..|++.|..+++++|....
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   65 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCccc
Confidence            4679999999999999999999999889999996653

>d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=93.54  E-value=0.015  Score=43.80  Aligned_cols=84  Identities=14%  Similarity=0.269  Sum_probs=45.3

Q ss_pred             hhHhhhcccCcCCCCccccCCCCCC------ChHHHHHHHhc----C--CHHHHHHHHHhhCCCCc-cccccCCCCCchh
Q psy16201         34 GALKEASRCLKCADAPCQKSCPTQI------DIKSFITSISH----K--NYYGAAKAIFSDNPLGL-TCGMVCPTSDLCM  100 (240)
Q Consensus        34 ~~~~ea~rC~~c~~~~C~~aCP~~~------di~~~i~~i~~----g--~~~~A~~~i~~~np~p~-~cgrvC~~~~~Ce  100 (240)
                      ..+.+..+|+.|+  .|+.+||+..      ....+..+.+.    +  .-.+-+..+.  +++.. .| ..|.   .|+
T Consensus        35 ~~~~~~~~CI~Cg--~C~~~CP~~~~~~~~~gp~~~~~~~r~~~d~rd~~~~~rl~~l~--~~~g~~~C-~~C~---~C~  106 (138)
T d1kf6b1          35 AKYHQFSGCINCG--LCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLN--SQNGVWSC-TFVG---YCS  106 (138)
T ss_dssp             HTTGGGGCCCCCC--HHHHHCHHHHHCTTSCCHHHHHHHHHHHTCTTCCCTHHHHHHHH--STTTGGGC-CCCC---HHH
T ss_pred             hhHHHHHHHHHhC--hhhccCccchhhhhhhhHHHHHHHHHhccCcchhhhhhhHHHhh--cccccccC-chhC---ccc
Confidence            3445778999999  7999999731      22233332221    1  1122222222  22211 23 3454   699


Q ss_pred             hhccccccCCCccccchhhHHHHHHHH
Q psy16201        101 GGCNLYAAEEGPINIGGLQQFATEVFK  127 (240)
Q Consensus       101 ~~C~r~~~~~~pV~I~~l~r~~~~~~~  127 (240)
                      .+||.+.  +-.-.|..|++-+.....
T Consensus       107 ~~CP~gI--~~~~~I~~lr~~~~k~~~  131 (138)
T d1kf6b1         107 EVCPKHV--DPAAAIQQGKVESSKDFL  131 (138)
T ss_dssp             HHCTTCC--CHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCC--CHHHHHHHHHHHHHHHHH
Confidence            9999753  222347778777665444

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=93.52  E-value=0.12  Score=43.07  Aligned_cols=75  Identities=15%  Similarity=0.103  Sum_probs=47.6

Q ss_pred             eEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCCcccccc-chHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201        147 KIALIGC-GPASLSCATFLSRMGYDDITIYEKNTYDMVTNV-SPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY  223 (240)
Q Consensus       147 ~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~-~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~  223 (240)
                      ||+|+|+ |..|-..+..|.++|+ +|+++|+...+.-... ........++.+..+. +...-.++.+.+....|.||
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~d~~~l~~~~~~~~~d~Vi   78 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIERLGGKHPTFVEGD-IRNEALMTEILHDHAIDTVI   78 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHHHHHTSCCEEEECC-TTCHHHHHHHHHHTTCSEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHhhcCCCCEEEEee-cCCHHHHHHHHhccCCCEEE
Confidence            6999998 8999999999999999 7999997654321110 1122344567766433 32222333333333578877

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.51  E-value=0.05  Score=41.63  Aligned_cols=37  Identities=19%  Similarity=0.164  Sum_probs=30.2

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+.+|+|+|+|+.|+.++..+...|...|.+.|..+
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            4588999999999999999999889984456666544

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.42  E-value=0.049  Score=41.91  Aligned_cols=37  Identities=19%  Similarity=0.189  Sum_probs=32.2

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+..|+|+|+|+.|+.++..+..+|...|.+.|..+
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            4578999999999999999999999975688888765

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.38  E-value=0.15  Score=36.70  Aligned_cols=75  Identities=11%  Similarity=0.143  Sum_probs=49.2

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHh--hcCCcEEE
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISE--KTAYQWVY  223 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~--~s~~d~V~  223 (240)
                      |.|+|+|.|..|...+..|  +|. .|.++|..+..      .+.+...|+.+..|..    -+.+.|.+  -...++++
T Consensus         1 kHivI~G~g~~g~~l~~~L--~~~-~i~vi~~d~~~------~~~~~~~~~~~i~Gd~----~~~~~L~~a~i~~A~~vi   67 (129)
T d2fy8a1           1 RHVVICGWSESTLECLREL--RGS-EVFVLAEDENV------RKKVLRSGANFVHGDP----TRVSDLEKANVRGARAVI   67 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTS--CGG-GEEEEESCTTH------HHHHHHTTCEEEESCT----TSHHHHHHTTCTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHH--cCC-CCEEEEcchHH------HHHHHhcCcccccccc----CCHHHHHHhhhhcCcEEE
Confidence            5799999999999999998  567 68888876542      2334567888877653    23344443  12356677


Q ss_pred             EecccchhhH
Q psy16201        224 YSNCKVLSNT  233 (240)
Q Consensus       224 ~s~~~~~~~l  233 (240)
                      ..+.+...++
T Consensus        68 ~~~~~d~~n~   77 (129)
T d2fy8a1          68 VNLESDSETI   77 (129)
T ss_dssp             ECCSSHHHHH
T ss_pred             EeccchhhhH
Confidence            6665554443

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.34  E-value=0.051  Score=41.83  Aligned_cols=37  Identities=19%  Similarity=0.497  Sum_probs=32.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      ..+.||+|||+|-.|-++|+.|..+|+. ++.++|...
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            3467999999999999999999999965 799999764

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.25  E-value=0.052  Score=40.78  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=29.6

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      .||+|||+|-.|.++|+.|..+|.. ++.++|...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            4899999999999999999999864 699999665

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.22  E-value=0.058  Score=42.38  Aligned_cols=37  Identities=22%  Similarity=0.363  Sum_probs=31.1

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+..|+|+|+|+.|+.++..+...|...|.+.|..+
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            4578999999999999999998888875788888654

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.18  E-value=0.055  Score=45.40  Aligned_cols=37  Identities=19%  Similarity=0.153  Sum_probs=32.9

Q ss_pred             CCCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+.+|+|.|| |..|...+..|.++|+ +|+++|+...
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~~   50 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKN   50 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCCc
Confidence            56889999997 9999999999999999 8999997653

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=93.02  E-value=0.058  Score=40.23  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=30.0

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCC-cEEEEecCCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYD-DITIYEKNTY  180 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~~  180 (240)
                      ||+|||+|-.|.+.|+.|+..|.. ++.++|..+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            799999999999999999999843 8999997763

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.055  Score=42.08  Aligned_cols=34  Identities=26%  Similarity=0.548  Sum_probs=30.9

Q ss_pred             CCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+||+|+|+ |..|...+..|.++|+ +|+++.|+.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~   37 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDS   37 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcCh
Confidence            578999996 9999999999999999 899998865

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.77  E-value=0.23  Score=41.25  Aligned_cols=36  Identities=17%  Similarity=0.240  Sum_probs=31.7

Q ss_pred             CCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|+|+|+|+ |..|-..+..|.++|+ +|+++-|+..
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~~   38 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLK   38 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCcc
Confidence            4689999997 9999999999999999 7999977643

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.77  E-value=0.068  Score=41.50  Aligned_cols=36  Identities=17%  Similarity=0.406  Sum_probs=32.5

Q ss_pred             CCCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+|+|+|.|+ |-.|...|..|++.|. +|++++|+.
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~   57 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKL   57 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccch
Confidence            46899999995 7899999999999999 899999875

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=92.66  E-value=0.16  Score=42.81  Aligned_cols=78  Identities=17%  Similarity=0.051  Sum_probs=46.5

Q ss_pred             eEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEEEe
Q psy16201        147 KIALIGC-GPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVYYS  225 (240)
Q Consensus       147 ~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~~s  225 (240)
                      +|+|.|+ |..|...+..|.++|+..|..+|......-...........+++|..+. +-....++.+.+...+|.||-.
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~D-l~d~~~l~~~~~~~~~d~Vihl   80 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHAD-ICDSAEITRIFEQYQPDAVMHL   80 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECC-TTCHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEcc-CCCHHHHHHHHHhCCCCEEEEC
Confidence            7999998 8999999999999999335557765443311112333344566765433 2111123334344357888743

>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=92.63  E-value=0.018  Score=42.63  Aligned_cols=29  Identities=21%  Similarity=0.594  Sum_probs=25.5

Q ss_pred             hcccCcCCCCccccCCCCCCChHHHHHHHhc
Q psy16201         39 ASRCLKCADAPCQKSCPTQIDIKSFITSISH   69 (240)
Q Consensus        39 a~rC~~c~~~~C~~aCP~~~di~~~i~~i~~   69 (240)
                      ...|+.|+  -|+.+||.++++.+.|..++.
T Consensus        99 ~~~Ct~Cg--~C~~vCP~gI~~~~~I~~lRr  127 (133)
T d2bs2b1          99 VFGCMTLL--ACHDVCPKNLPLQSKIAYLRR  127 (133)
T ss_dssp             GGGCCCCC--HHHHHCTTCCCHHHHHHHHHH
T ss_pred             chhChhhC--CCcccCcCCCChHHHHHHHHH
Confidence            34799999  699999999999999988873

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.62  E-value=0.18  Score=41.86  Aligned_cols=78  Identities=12%  Similarity=0.043  Sum_probs=48.4

Q ss_pred             CeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCCccccccc-hHHHhccCceEEeCCccCcccCHHHHHhhcCCcEEE
Q psy16201        146 TKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTYDMVTNVS-PRIVKGTTSRHLYGPEQGSFLNIELISEKTAYQWVY  223 (240)
Q Consensus       146 ~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~-~~~~~~~gv~~~~~~~vg~~i~~e~L~~~s~~d~V~  223 (240)
                      |-|+|.|+ |..|-..+..|.++|+ +|+++|+.......+.. .......++++..+. +-..-.++.+......|.||
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~D-l~d~~~l~~~~~~~~~d~Vi   79 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADNLSNSTYDSVARLEVLTKHHIPFYEVD-LCDRKGLEKVFKEYKIDSVI   79 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTHHHHHHHHHHTSCCCEEECC-TTCHHHHHHHHHHSCCCEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEECCCCcchhHHHhHHhhcccCCeEEEee-cCCHHHHHHHHhccCCCEEE
Confidence            45778887 8999999999999999 89999976544322211 123345567766532 21112233334444688887


Q ss_pred             Ee
Q psy16201        224 YS  225 (240)
Q Consensus       224 ~s  225 (240)
                      -.
T Consensus        80 hl   81 (347)
T d1z45a2          80 HF   81 (347)
T ss_dssp             EC
T ss_pred             Ec
Confidence            53

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=92.33  E-value=0.095  Score=39.62  Aligned_cols=37  Identities=22%  Similarity=0.271  Sum_probs=31.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      +.+.+|+|+|+|+.|+.++..++..|...|+++++.+
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            4578899999999999999999888875688888765

>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=92.27  E-value=0.018  Score=42.63  Aligned_cols=24  Identities=38%  Similarity=0.850  Sum_probs=19.6

Q ss_pred             hhhhHhhhcccCcCCCCccccCCCCC
Q psy16201         32 ERGALKEASRCLKCADAPCQKSCPTQ   57 (240)
Q Consensus        32 ~~~~~~ea~rC~~c~~~~C~~aCP~~   57 (240)
                      ..+.+.+...|+.|+  .|+.+||+.
T Consensus        33 ~~~~~~~~~~CI~CG--~C~~~CP~~   56 (132)
T d1nekb1          33 QREKLDGLYECILCA--CCSTSCPSF   56 (132)
T ss_dssp             HHHTTTTTSCCCCCC--HHHHTCHHH
T ss_pred             HHHHHHhhHHHhHhh--hhhhhCccc
Confidence            334667889999999  799999974

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.23  E-value=0.091  Score=40.28  Aligned_cols=36  Identities=22%  Similarity=0.537  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      ...+|+|||+|-.|.++|+.|..+|+. ++.++|...
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            445899999999999999999999865 699999764

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.09  E-value=0.11  Score=41.31  Aligned_cols=37  Identities=22%  Similarity=0.417  Sum_probs=31.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHH--------------------HcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLS--------------------RMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~--------------------~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|||+|-.+|=+|..|+                    +.|.++|+++-|..
T Consensus        37 ~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          37 LSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             ccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            45789999999999999998887                    67877899998765

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=92.06  E-value=0.31  Score=37.74  Aligned_cols=37  Identities=8%  Similarity=0.226  Sum_probs=33.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -.+++|.|||.|..|...|..|...|. +|..+++...
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   78 (188)
T d2naca1          42 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRL   78 (188)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCC
T ss_pred             ccccceeeccccccchhhhhhhhccCc-eEEEEeeccc
Confidence            468899999999999999999999999 8999998653

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=92.04  E-value=0.28  Score=37.78  Aligned_cols=36  Identities=19%  Similarity=0.406  Sum_probs=33.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+|+++|+|=|..|-.+|..|+..|. +|+|.|..+
T Consensus        21 laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DP   56 (163)
T d1v8ba1          21 ISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDP   56 (163)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCH
T ss_pred             ecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCc
Confidence            469999999999999999999999999 899999887

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.98  E-value=0.0037  Score=50.36  Aligned_cols=37  Identities=11%  Similarity=-0.042  Sum_probs=33.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+++|+|+|+|.+|+.+|..|++.|. +|+++++.+.
T Consensus       178 ~~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~r~~~  214 (233)
T d1djqa3         178 DAEAPRLIADATFTGHRVAREIEEANP-QIAIPYKRET  214 (233)
T ss_dssp             GGTSCCCHHHHHHHHHHHHHTTTSSCT-TSCCCCCCCC
T ss_pred             ccCCceeEecCchHHHHHHHHHHhcCC-ceEEEEeccc
Confidence            456899999999999999999999999 7999998865

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.97  E-value=0.066  Score=36.42  Aligned_cols=34  Identities=9%  Similarity=0.087  Sum_probs=30.7

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      |+|.|+|+|--|...+....+.|+ +|.+++....
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCC
Confidence            589999999999999999999999 8999997654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.97  E-value=0.14  Score=38.86  Aligned_cols=36  Identities=14%  Similarity=0.232  Sum_probs=30.3

Q ss_pred             CCCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+.+|+|.|+ |+.|+.+...+..+|. +|.+.++.+
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~   62 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRP   62 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSG
T ss_pred             CCCCEEEEEeccccchhhhhhhhccccc-ccccccccc
Confidence            35789999996 9999999998888999 798888654

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=91.92  E-value=0.11  Score=39.11  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=30.1

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      .||+|||+|-.|.++|+.|..+|.. ++.++|...
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            4899999999999999999999864 799999765

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=91.89  E-value=0.11  Score=39.37  Aligned_cols=37  Identities=16%  Similarity=0.341  Sum_probs=30.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+..|+|+|+|+.|+.++..+..+|...|++.++.+
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            3477999999999999999998888864677788764

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.84  E-value=0.3  Score=37.82  Aligned_cols=37  Identities=16%  Similarity=0.384  Sum_probs=34.1

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -.+++|.|||.|..|-..|..|...|. +|.+|++...
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~   76 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPK   76 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             ccCceEEEeccccccccceeeeecccc-cccccccccc
Confidence            568999999999999999999999999 8999998764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.70  E-value=0.093  Score=41.96  Aligned_cols=38  Identities=16%  Similarity=0.197  Sum_probs=33.1

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHH--------------------cCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSR--------------------MGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~--------------------~G~~~V~v~e~~~~  180 (240)
                      ..+++|+|||+|-.+|=+|..|.+                    .|.++|+++.|+..
T Consensus        37 ~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          37 LSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             TTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             ccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            458999999999999999999988                    47779999988763

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=91.46  E-value=0.084  Score=40.56  Aligned_cols=36  Identities=17%  Similarity=0.292  Sum_probs=31.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+++|+|+|+|-++.++++.|.+.+. +|+|+.|..
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~~-~i~I~nR~~   51 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRTF   51 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESSH
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccCc-eeeeccchH
Confidence            358899999999999999999988776 899999875

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.34  E-value=0.11  Score=38.72  Aligned_cols=34  Identities=24%  Similarity=0.419  Sum_probs=29.5

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      .||+|||+|-.|.++|+.|+.++.. ++.++|...
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            3899999999999999999998854 799999764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.31  E-value=0.14  Score=38.72  Aligned_cols=37  Identities=22%  Similarity=0.155  Sum_probs=31.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+..|+|+|+|..|+.++..++..|...|.+.+.++
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            4578999999999999999999999865788888765

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.22  E-value=0.13  Score=42.48  Aligned_cols=34  Identities=18%  Similarity=0.195  Sum_probs=30.3

Q ss_pred             CCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        145 DTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .|||+|.|+ |..|...+..|.++|+ +|+++++..
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~~~   35 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNFF   35 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCC
Confidence            478999998 8999999999999999 899998643

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.16  E-value=0.098  Score=44.37  Aligned_cols=31  Identities=26%  Similarity=0.528  Sum_probs=28.4

Q ss_pred             CCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEe
Q psy16201        145 DTKIALIGC-GPASLSCATFLSRMGYDDITIYE  176 (240)
Q Consensus       145 ~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e  176 (240)
                      ++||+|.|+ |..|-..+..|.++|| +|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe
Confidence            579999998 8999999999999999 799998

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.98  E-value=0.12  Score=38.63  Aligned_cols=34  Identities=15%  Similarity=0.129  Sum_probs=29.6

Q ss_pred             CeEEEECCChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        146 TKIALIGCGPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      .||+|||+|-.|.+.|+.|+.+|.. ++.+||.+.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            3799999999999999999988853 799999765

>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=90.75  E-value=0.033  Score=41.13  Aligned_cols=29  Identities=24%  Similarity=0.494  Sum_probs=25.7

Q ss_pred             hcccCcCCCCccccCCCCCCChHHHHHHHhc
Q psy16201         39 ASRCLKCADAPCQKSCPTQIDIKSFITSISH   69 (240)
Q Consensus        39 a~rC~~c~~~~C~~aCP~~~di~~~i~~i~~   69 (240)
                      ..+|+.|+  -|+.+||.++++.+.|..++.
T Consensus        97 i~~C~~C~--~C~~vCP~gI~~~~~I~~lR~  125 (132)
T d1nekb1          97 VFRCHSIM--NCVSVCPKGLNPTRAIGHIKS  125 (132)
T ss_dssp             TTTCCCCC--HHHHHCTTCCCHHHHHHHHHH
T ss_pred             hhhCcCcc--cccccCcCCCCHHHHHHHHHH
Confidence            45699999  699999999999999998874

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.72  E-value=0.18  Score=37.84  Aligned_cols=37  Identities=11%  Similarity=0.137  Sum_probs=30.7

Q ss_pred             CCCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+.+|+|+|+ |+.|+.++..+...|...|++.+.++
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccch
Confidence            34779999995 99999999999888865788888764

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=90.58  E-value=0.17  Score=42.08  Aligned_cols=35  Identities=14%  Similarity=0.197  Sum_probs=30.8

Q ss_pred             CCCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        143 FPDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       143 ~~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      +++++|+|.|+ |..|...+..|.++|+ +|....|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~   44 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARS   44 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCC
Confidence            56999999999 8999999999999999 79876654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.55  E-value=0.14  Score=38.44  Aligned_cols=33  Identities=21%  Similarity=0.387  Sum_probs=29.1

Q ss_pred             eEEEECC-ChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        147 KIALIGC-GPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~-G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      ||+|||+ |-.|.++|+.|..+|+. ++.++|...
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            7999995 99999999999999864 799999764

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.50  E-value=0.13  Score=38.60  Aligned_cols=33  Identities=21%  Similarity=0.476  Sum_probs=28.9

Q ss_pred             eEEEECC-ChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        147 KIALIGC-GPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~-G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      ||+|||+ |..|.++|+.|+.+|.. ++.++|...
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            7999995 99999999999999953 799999764

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.09  E-value=0.18  Score=37.91  Aligned_cols=37  Identities=22%  Similarity=0.178  Sum_probs=30.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+..|+|.|+|..|+.++..+...|...|.+.+..+
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            4577999999999999999999999974566676544

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=89.87  E-value=0.39  Score=39.07  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=30.4

Q ss_pred             CCCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -++|.++|.|+ |-.|.+.|..|++.|+ +|.+.+++.
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~   59 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKM   59 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCH
Confidence            45778888886 4579999999999999 899999875

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=89.80  E-value=0.17  Score=37.62  Aligned_cols=32  Identities=25%  Similarity=0.423  Sum_probs=28.6

Q ss_pred             eEEEECCChhHHHHHHHHHHcC-CCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMG-YDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G-~~~V~v~e~~~  179 (240)
                      +|.+||+|-.|-+.+..|.+.| + +|.+++++.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~-~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGY-RIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSC-EEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCC-cEEEEeCCh
Confidence            7999999999999999888887 7 899999875

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=89.68  E-value=0.18  Score=39.90  Aligned_cols=36  Identities=17%  Similarity=0.293  Sum_probs=32.8

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|+|-|.|-.|..+|.+|.+.|. +|++.|...
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~   60 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDT   60 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchH
Confidence            468999999999999999999999999 899998654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.48  E-value=0.23  Score=40.06  Aligned_cols=37  Identities=19%  Similarity=0.449  Sum_probs=33.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+.+|+|.|+|.+|+..|..|.+.|.++++++|+..
T Consensus        24 l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G   60 (222)
T d1vl6a1          24 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG   60 (222)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             hhhcEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence            4578999999999999999999999988999999873

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.37  E-value=0.21  Score=40.85  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=29.6

Q ss_pred             CeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      |+++|.|+ |..|...+..|.++|| +|+.+++..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            67888888 8999999999999999 899999864

>d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=89.27  E-value=0.053  Score=40.60  Aligned_cols=29  Identities=21%  Similarity=0.399  Sum_probs=25.4

Q ss_pred             hcccCcCCCCccccCCCCCCChHHHHHHHhc
Q psy16201         39 ASRCLKCADAPCQKSCPTQIDIKSFITSISH   69 (240)
Q Consensus        39 a~rC~~c~~~~C~~aCP~~~di~~~i~~i~~   69 (240)
                      ..+|+.|+  -|+.+||.++++.+.|..++.
T Consensus        96 ~~~C~~C~--~C~~~CP~gI~~~~~I~~lr~  124 (138)
T d1kf6b1          96 VWSCTFVG--YCSEVCPKHVDPAAAIQQGKV  124 (138)
T ss_dssp             GGGCCCCC--HHHHHCTTCCCHHHHHHHHHH
T ss_pred             cccCchhC--cccccCCCCCCHHHHHHHHHH
Confidence            34799999  599999999999999988874

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.03  E-value=0.16  Score=38.75  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=29.5

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|+|+|+|-++-++++.|.+.|  +|+|+.|..
T Consensus        16 ~~~k~vlIlGaGG~arai~~aL~~~~--~i~I~nR~~   50 (177)
T d1nvta1          16 VKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTV   50 (177)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSSH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHcccc--ceeeehhhh
Confidence            35889999999999999999987666  599998864

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=89.01  E-value=0.21  Score=39.23  Aligned_cols=37  Identities=11%  Similarity=0.338  Sum_probs=33.2

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -.+++|.|||.|-.|...|..|...|. +|..||+...
T Consensus        43 l~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   79 (199)
T d1dxya1          43 LGQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPM   79 (199)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             ccceeeeeeecccccccccccccccce-eeeccCCccc
Confidence            457899999999999999999999999 8999998653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=88.91  E-value=0.22  Score=39.23  Aligned_cols=37  Identities=14%  Similarity=0.298  Sum_probs=33.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -.+++|.|||.|..|-..|..|...|. +|..||+...
T Consensus        41 l~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~   77 (197)
T d1j4aa1          41 VRDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRN   77 (197)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             ccCCeEEEecccccchhHHHhHhhhcc-cccccCcccc
Confidence            468999999999999999999999999 8999997653

>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Bacillus schlegelii [TaxId: 1484]

Probab=88.76  E-value=0.12  Score=34.59  Aligned_cols=21  Identities=29%  Similarity=0.715  Sum_probs=17.6

Q ss_pred             hcccCcCCCCccccCCCCCCC
Q psy16201         39 ASRCLKCADAPCQKSCPTQID   59 (240)
Q Consensus        39 a~rC~~c~~~~C~~aCP~~~d   59 (240)
                      ...|++|....|...||.+.-
T Consensus         5 ~~~C~~C~~g~C~~~CP~~Ai   25 (77)
T d1bc6a_           5 TEPCIGTKDASCVEVCPVDCI   25 (77)
T ss_dssp             CSTTTTCCCCSSTTTCTTCCE
T ss_pred             CccCCCccCcchhhhCCCCCe
Confidence            467999977789999999853

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=88.56  E-value=0.24  Score=38.84  Aligned_cols=37  Identities=16%  Similarity=0.370  Sum_probs=33.4

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -.+++|.|||.|..|-..|..|...|. +|..|++...
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   83 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLS   83 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSC
T ss_pred             eeCceEEEeccccccccceeeeecccc-ceeeccCccc
Confidence            468999999999999999999999999 8999998653

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=88.50  E-value=0.7  Score=38.04  Aligned_cols=35  Identities=20%  Similarity=0.225  Sum_probs=27.2

Q ss_pred             CCeEEEECC-ChhHHHHHHHHHHcCCC-cEEEEecCC
Q psy16201        145 DTKIALIGC-GPASLSCATFLSRMGYD-DITIYEKNT  179 (240)
Q Consensus       145 ~~~VaViG~-G~~Gl~~a~~L~~~G~~-~V~v~e~~~  179 (240)
                      -++|+|.|| |..|-..+..|.++|+. .|+++|...
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~   38 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLT   38 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCC
Confidence            368999996 99999999999999983 244555433

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=0.29  Score=40.41  Aligned_cols=35  Identities=17%  Similarity=0.156  Sum_probs=30.7

Q ss_pred             CCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .|||+|.|+ |..|-..+..|.++|+ .|+++|+...
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~~~~   37 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDNFHN   37 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEECSSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCCc
Confidence            369999998 8999999999999999 7999997543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=88.28  E-value=0.84  Score=37.27  Aligned_cols=71  Identities=14%  Similarity=0.089  Sum_probs=44.5

Q ss_pred             eEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCCccccccchHHHhccCceEEeCCccCcccC-HHHHHhhcCCcEEEE
Q psy16201        147 KIALIGC-GPASLSCATFLSRMGYDDITIYEKNTYDMVTNVSPRIVKGTTSRHLYGPEQGSFLN-IELISEKTAYQWVYY  224 (240)
Q Consensus       147 ~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~~~~~~~~~~~~~~~gv~~~~~~~vg~~i~-~e~L~~~s~~d~V~~  224 (240)
                      +|+|.|+ |..|-..+..|.++|+.+|.++|+....     .........++|..+. +..+-. .+.+..+  .|.|+-
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~-----~~~~~~~~~~~~i~~D-i~~~~~~~~~~~~~--~d~Vih   73 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA-----ISRFLNHPHFHFVEGD-ISIHSEWIEYHVKK--CDVVLP   73 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG-----GGGGTTCTTEEEEECC-TTTCSHHHHHHHHH--CSEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc-----hhhhccCCCeEEEECc-cCChHHHHHHHHhC--CCcccc
Confidence            7999998 8999999999999984269999875432     1223334566666543 211112 2223333  888776


Q ss_pred             e
Q psy16201        225 S  225 (240)
Q Consensus       225 s  225 (240)
                      .
T Consensus        74 ~   74 (342)
T d2blla1          74 L   74 (342)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=88.22  E-value=0.18  Score=37.65  Aligned_cols=34  Identities=24%  Similarity=0.447  Sum_probs=27.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .++.+|+.+|+|.+.  .+.+|+++|+ +|+-+|-..
T Consensus        19 ~~~~rvLd~GCG~G~--~a~~la~~G~-~V~gvD~S~   52 (201)
T d1pjza_          19 VPGARVLVPLCGKSQ--DMSWLSGQGY-HVVGAELSE   52 (201)
T ss_dssp             CTTCEEEETTTCCSH--HHHHHHHHCC-EEEEEEECH
T ss_pred             CCCCEEEEecCcCCH--HHHHHHHcCC-ceEeecccH
Confidence            357899999999886  4557889999 899999654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.03  E-value=0.2  Score=44.11  Aligned_cols=36  Identities=22%  Similarity=0.371  Sum_probs=32.6

Q ss_pred             CCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +.||+|||+|-.|..++..|++.|+.+++|+|....
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~V   72 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI   72 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence            568999999999999999999999888999997653

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=88.01  E-value=0.28  Score=36.63  Aligned_cols=32  Identities=9%  Similarity=0.283  Sum_probs=28.1

Q ss_pred             eEEEEC-CChhHHHHHHHHHHcCCC-cEEEEecC
Q psy16201        147 KIALIG-CGPASLSCATFLSRMGYD-DITIYEKN  178 (240)
Q Consensus       147 ~VaViG-~G~~Gl~~a~~L~~~G~~-~V~v~e~~  178 (240)
                      ||+||| +|-.|-++|+.|..+|.. ++.++|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            899999 699999999999999865 68899853

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.88  E-value=0.31  Score=38.70  Aligned_cols=35  Identities=6%  Similarity=0.131  Sum_probs=30.5

Q ss_pred             CCCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCG-PASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|+|+|.|++ -.|.+.|..|+++|+ +|.++++..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~   36 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVE   36 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            37899999995 479999999999999 899998765

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.55  E-value=0.3  Score=40.10  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=29.2

Q ss_pred             CeE-EEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKI-ALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~V-aViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      |+| +|.|+ |..|-..+..|.++|| +|+.+++..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            588 68888 8999999999999999 899999864

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.25  E-value=0.26  Score=37.30  Aligned_cols=30  Identities=10%  Similarity=0.055  Sum_probs=26.4

Q ss_pred             CeEEEECC-ChhHHHHHHHHHHcCCCcEEEEe
Q psy16201        146 TKIALIGC-GPASLSCATFLSRMGYDDITIYE  176 (240)
Q Consensus       146 ~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e  176 (240)
                      ++|+|.|+ |..|...+..|.++|+ +|+|++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~-~v~v~~   34 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSD-KFVAKG   34 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTT-TCEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCC-cEEEEE
Confidence            58999996 9999999999999998 677665

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.10  E-value=0.3  Score=39.58  Aligned_cols=36  Identities=17%  Similarity=0.349  Sum_probs=31.5

Q ss_pred             CCCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -++|.++|.|++- .|.+.|..|+++|+ +|.+..++.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~   48 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSK   48 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            4688999999865 69999999999999 899999864

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=86.92  E-value=0.21  Score=40.38  Aligned_cols=37  Identities=22%  Similarity=0.197  Sum_probs=30.0

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ++|.++|.|++- .|++.|..|++.|+ +|.+.++++..
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~   40 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAA   40 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHH
Confidence            467777777754 68999999999999 89999987643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.74  E-value=0.53  Score=35.27  Aligned_cols=36  Identities=14%  Similarity=0.176  Sum_probs=30.3

Q ss_pred             CCCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ..+.+|+|.|+ |+.|+.+...+..+|. +|++....+
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~   63 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTE   63 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             CCCCEEEEEeccccccccccccccccCc-ccccccccc
Confidence            45779999996 9999999998888999 798887543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=86.71  E-value=0.34  Score=38.85  Aligned_cols=36  Identities=14%  Similarity=0.081  Sum_probs=30.8

Q ss_pred             CCCeEEEECC-C--hhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGC-G--PASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~-G--~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ++|.++|.|+ |  -.|.+.|..|++.|+ +|.+.+++..
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~   42 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNES   42 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence            5889999996 3  379999999999999 8999998753

>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=86.63  E-value=0.053  Score=39.88  Aligned_cols=24  Identities=33%  Similarity=0.793  Sum_probs=19.1

Q ss_pred             hhhHhhhcccCcCCCCccccCCCCCC
Q psy16201         33 RGALKEASRCLKCADAPCQKSCPTQI   58 (240)
Q Consensus        33 ~~~~~ea~rC~~c~~~~C~~aCP~~~   58 (240)
                      ...+.+...|+.|+  .|+.+||+..
T Consensus        36 ~~~~~~~~~Ci~CG--~C~~~CP~~~   59 (133)
T d2bs2b1          36 AQEVFELDRCIECG--CCIAACGTKI   59 (133)
T ss_dssp             HHHHHHHHTCCCCC--HHHHTCHHHH
T ss_pred             HHHHHhHHHHhhhh--hHHHhCCccc
Confidence            33456788999999  7999999743

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.35  E-value=0.42  Score=37.90  Aligned_cols=36  Identities=14%  Similarity=0.119  Sum_probs=30.7

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ++|.++|.|++- .|.+.|..|++.|+ +|.+.+++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~   40 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNS   40 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChH
Confidence            577888888864 68999999999999 8999998764

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.23  E-value=0.47  Score=39.00  Aligned_cols=37  Identities=8%  Similarity=0.035  Sum_probs=31.9

Q ss_pred             CCCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        144 PDTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       144 ~~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ..|+|+|.|+ |..|-..+..|.+.|+ +|+.+|+...+
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~~~~~   52 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFATG   52 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEECCCCc
Confidence            4568999998 8999999999999999 89999975543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=86.13  E-value=0.3  Score=39.44  Aligned_cols=37  Identities=14%  Similarity=0.267  Sum_probs=31.5

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      ++|.++|.|++- .|.+.|..|++.|+ +|.+.+++...
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~   45 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAAD   45 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHH
Confidence            578888888865 79999999999999 89999987643

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=86.05  E-value=0.37  Score=40.25  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=27.9

Q ss_pred             CeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALIGC-GPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      |.|+|.|+ |..|-..+..|.++|+ +|+++++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            56778895 9999999999999999 899999853

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.02  E-value=0.5  Score=36.45  Aligned_cols=36  Identities=17%  Similarity=0.353  Sum_probs=32.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+++|.|+|.|..|...|..|...|. +|..|++..
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~   77 (188)
T d1sc6a1          42 ARGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIEN   77 (188)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             ccceEEEEeecccchhhhhhhcccccc-eEeeccccc
Confidence            468899999999999999999999999 899999765

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.93  E-value=0.47  Score=37.94  Aligned_cols=36  Identities=11%  Similarity=0.256  Sum_probs=31.3

Q ss_pred             CCCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+|.++|.|++- .|.+.|..|++.|+ +|.+.+++.
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~   41 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQ   41 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCH
Confidence            3688999999964 69999999999999 899999864

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.88  E-value=0.48  Score=37.80  Aligned_cols=37  Identities=16%  Similarity=0.253  Sum_probs=31.8

Q ss_pred             CCCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -.+|.++|.|++- .|.+.|..|++.|+ +|.+.++...
T Consensus         5 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~   42 (237)
T d1uzma1           5 FVSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSG   42 (237)
T ss_dssp             CCCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcc
Confidence            4688888888864 79999999999999 8999998764

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=85.87  E-value=0.41  Score=38.00  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=29.9

Q ss_pred             CCCeEEEECCCh---hHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGP---ASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~---~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|.|+|.|++-   .|.+.|..|++.|+ +|.+.++++.
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~   42 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDK   42 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTT
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHH
Confidence            578899998754   57889999999999 8999988754

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=85.77  E-value=0.28  Score=38.73  Aligned_cols=34  Identities=15%  Similarity=0.178  Sum_probs=30.5

Q ss_pred             CeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        146 TKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       146 ~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .||+|.|+ |..|-..+..|..+|+ +|+.+++...
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~~   36 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV-EVIPTDVQDL   36 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEeechhc
Confidence            47999998 9999999999999999 8999998753

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.76  E-value=0.44  Score=38.11  Aligned_cols=35  Identities=11%  Similarity=0.202  Sum_probs=30.3

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|.++|.|++- .|.+.|..|++.|+ +|.+.+++.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~   39 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTN   39 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            478889999864 79999999999999 899999764

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.67  E-value=0.39  Score=35.63  Aligned_cols=31  Identities=26%  Similarity=0.418  Sum_probs=26.3

Q ss_pred             eEEEECCChhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        147 KIALIGCGPASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       147 ~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ||.+||.|..|...|..|.+.|+ .+ ++.+..
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~-~~-~~~~~~   32 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFP-TL-VWNRTF   32 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSC-EE-EECSST
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCC-EE-EEeCCH
Confidence            79999999999999999999998 45 565554

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.61  E-value=0.47  Score=37.62  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=30.5

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.++|.|++- .|.+.|..|++.|+ +|.+.+++.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~   38 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNE   38 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            578999999864 79999999999999 899998764

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.54  E-value=0.52  Score=42.27  Aligned_cols=42  Identities=21%  Similarity=0.196  Sum_probs=36.3

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCC-Cccccc
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNT-YDMVTN  185 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~-~~~~~~  185 (240)
                      +...+|+|+|.|..=...|..|++.|. +|.-+|+++ +|+.|.
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~Gk-kVLHiD~N~yYGg~~a   46 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQ-RVLHVDSRSYYGGNWA   46 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCGGGC
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCC-EEEEecCCCcCCCccc
Confidence            356799999999998888888999999 899999998 477666

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=85.28  E-value=0.47  Score=38.34  Aligned_cols=36  Identities=17%  Similarity=0.251  Sum_probs=30.4

Q ss_pred             CCCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+|.++|.|++- .|.+.|..|++.|+ +|.+.+++.
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~   40 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIAD   40 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            3578888888854 69999999999999 899999764

>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Formate dehydrogenase N, iron-sulfur (beta) subunit
species: Escherichia coli [TaxId: 562]

Probab=85.10  E-value=0.039  Score=45.33  Aligned_cols=18  Identities=39%  Similarity=1.182  Sum_probs=16.3

Q ss_pred             cccCcCCCCccccCCCCC
Q psy16201         40 SRCLKCADAPCQKSCPTQ   57 (240)
Q Consensus        40 ~rC~~c~~~~C~~aCP~~   57 (240)
                      ..|.+|.+|||+.+||++
T Consensus        97 ~~C~HC~~p~Cv~vCPt~  114 (244)
T d1kqfb1          97 DGCMHCEDPGCLKACPSA  114 (244)
T ss_dssp             ESCCCBSSCHHHHHCCST
T ss_pred             hhhccccCCccccccccc
Confidence            359999999999999985

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=85.05  E-value=0.49  Score=38.16  Aligned_cols=35  Identities=23%  Similarity=0.296  Sum_probs=30.4

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.++|.|++- .|++.|..|++.|+ +|.+.+++.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~   39 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNR   39 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            578888889864 69999999999999 899999764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=85.03  E-value=0.48  Score=38.07  Aligned_cols=33  Identities=30%  Similarity=0.480  Sum_probs=26.7

Q ss_pred             CeEEEE-CCC-hhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        146 TKIALI-GCG-PASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       146 ~~VaVi-G~G-~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      |||++| |++ -.|.+.|..|++.|+ +|.+.+++.
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga-~V~~~~r~~   35 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYND   35 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            577555 665 368999999999999 899999865

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=84.97  E-value=0.49  Score=37.63  Aligned_cols=36  Identities=11%  Similarity=0.181  Sum_probs=29.8

Q ss_pred             CCCCeEEEECC-Ch--hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGC-GP--ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~-G~--~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+|+++|.|+ |-  .|.+.|..|++.|+ +|.+.+++.
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~   42 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDR   42 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCCh
Confidence            35889999995 43  68899999999999 799987654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.93  E-value=0.45  Score=38.64  Aligned_cols=36  Identities=17%  Similarity=0.408  Sum_probs=30.3

Q ss_pred             CCCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -++|.++|.|++- .|.+.|..|++.|+ +|.+.+++.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~   39 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSS   39 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            3578888888854 68999999999999 899999764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=84.91  E-value=0.56  Score=37.86  Aligned_cols=35  Identities=14%  Similarity=0.174  Sum_probs=31.1

Q ss_pred             CCCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCG-PASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.|+|.|+. -.|.+.|..|++.|+ +|.+.+++.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~   40 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNE   40 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            58899999985 479999999999999 899999875

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.89  E-value=0.48  Score=37.82  Aligned_cols=36  Identities=14%  Similarity=0.268  Sum_probs=30.0

Q ss_pred             CCCCeEEEECCC---hhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCG---PASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G---~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -++|.++|.|++   -.|.+.|..|++.|+ +|.+.++..
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~   44 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAE   44 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSG
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcH
Confidence            358889999963   379999999999999 898888764

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.67  E-value=0.53  Score=37.93  Aligned_cols=36  Identities=14%  Similarity=0.201  Sum_probs=30.5

Q ss_pred             CCCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -++|.++|.|++- .|++.|..|++.|+ +|.+.+++.
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~   44 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTV   44 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            3578889999864 69999999999999 899999764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.61  E-value=0.45  Score=37.57  Aligned_cols=35  Identities=14%  Similarity=0.274  Sum_probs=30.0

Q ss_pred             CCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCG-PASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ..+|+|.|++ -.|.+.|..|+++|+ +|.++++...
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCch
Confidence            4579999985 469999999999999 8999998753

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=84.50  E-value=0.58  Score=36.36  Aligned_cols=35  Identities=14%  Similarity=0.219  Sum_probs=28.6

Q ss_pred             CCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGCG-PASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      +|.++|.|++ -.|.+.|..|++.|+ +|.+.+++..
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~   36 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRRE   36 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcc
Confidence            3567777774 578999999999999 8999998764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.43  E-value=0.55  Score=37.67  Aligned_cols=35  Identities=14%  Similarity=0.118  Sum_probs=29.5

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.++|.|++- .|.+.|..|++.|+ +|.+.+++.
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~   37 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNL   37 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            467788888854 69999999999999 899999864

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.42  E-value=0.56  Score=37.48  Aligned_cols=35  Identities=9%  Similarity=0.225  Sum_probs=30.1

Q ss_pred             CCCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCG-PASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.++|.|++ -.|.+.|..|++.|+ +|.+.+++.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~   39 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEE   39 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            47888888885 479999999999999 899999864

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.34  E-value=0.55  Score=37.92  Aligned_cols=35  Identities=9%  Similarity=0.098  Sum_probs=30.6

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.++|.|++- .|.+.|..|++.|+ +|.+.+++.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~   39 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLD   39 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            578899999864 69999999999999 899999865

>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Thermus thermophilus [TaxId: 274]

Probab=84.30  E-value=0.3  Score=32.56  Aligned_cols=21  Identities=24%  Similarity=0.692  Sum_probs=17.7

Q ss_pred             hcccCcCCCCccccCCCCCCC
Q psy16201         39 ASRCLKCADAPCQKSCPTQID   59 (240)
Q Consensus        39 a~rC~~c~~~~C~~aCP~~~d   59 (240)
                      ...|+.|....|+.+||.+.-
T Consensus         5 ~d~C~~C~~~~C~~~CP~~AI   25 (77)
T d1h98a_           5 CEPCIGVKDQSCVEVCPVECI   25 (77)
T ss_dssp             CGGGTTTCCCHHHHHCTTCCE
T ss_pred             CccCCCcCCchhHHHCCCCce
Confidence            457999987899999998854

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=84.23  E-value=0.63  Score=37.53  Aligned_cols=35  Identities=14%  Similarity=0.121  Sum_probs=30.2

Q ss_pred             CCCCeEEEECCC---hhHHHHHHHHHHcCCCcEEEEecC
Q psy16201        143 FPDTKIALIGCG---PASLSCATFLSRMGYDDITIYEKN  178 (240)
Q Consensus       143 ~~~~~VaViG~G---~~Gl~~a~~L~~~G~~~V~v~e~~  178 (240)
                      -++|.++|.|++   -.|++.|..|++.|. +|.+.++.
T Consensus         6 L~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~   43 (297)
T d1d7oa_           6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWV   43 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCc
Confidence            578999999975   489999999999999 89988764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.09  E-value=0.58  Score=37.55  Aligned_cols=35  Identities=11%  Similarity=0.253  Sum_probs=29.9

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|.++|.|++. .|.+.|..|+++|+ +|.+.+++.
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~   41 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINK   41 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            567777778865 69999999999999 899999865

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.74  E-value=0.42  Score=38.47  Aligned_cols=35  Identities=17%  Similarity=0.169  Sum_probs=30.0

Q ss_pred             CCCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCG-PASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.++|.|++ -.|++.|..|++.|+ +|.+.+++.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~   39 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINL   39 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            47788888885 469999999999999 899999764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=83.53  E-value=0.63  Score=37.54  Aligned_cols=35  Identities=17%  Similarity=0.308  Sum_probs=30.1

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.++|.|++. .|.+.|..|++.|+ +|.+.+++.
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~   38 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSS   38 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            477888888864 69999999999999 899999865

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.36  E-value=0.71  Score=37.03  Aligned_cols=35  Identities=14%  Similarity=0.184  Sum_probs=30.4

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.++|.|++- .|.+.|..|++.|+ +|.+.+++.
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~   39 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNL   39 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            478899999864 69999999999999 899999765

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.32  E-value=0.68  Score=34.42  Aligned_cols=34  Identities=21%  Similarity=0.423  Sum_probs=26.6

Q ss_pred             CeEEEEC-CChhHHHHHHHHHHc-CCC-cEEEEecCC
Q psy16201        146 TKIALIG-CGPASLSCATFLSRM-GYD-DITIYEKNT  179 (240)
Q Consensus       146 ~~VaViG-~G~~Gl~~a~~L~~~-G~~-~V~v~e~~~  179 (240)
                      .||+||| +|-.|-+.|+.|..+ +.. ++.++|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            3799999 599999999988643 532 799999654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=83.23  E-value=0.55  Score=37.52  Aligned_cols=35  Identities=11%  Similarity=0.056  Sum_probs=29.2

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.++|.|++- .|.+.|..|++.|+ +|.+.+++.
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~   38 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSE   38 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCH
Confidence            467777778754 68999999999999 899999865

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.14  E-value=0.6  Score=37.29  Aligned_cols=35  Identities=17%  Similarity=0.169  Sum_probs=29.5

Q ss_pred             CCCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCG-PASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|.++|.|++ -.|.+.|..|++.|+ +|.+.+++.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~   40 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINE   40 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCH
Confidence            46777777874 579999999999999 899999764

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=83.06  E-value=0.69  Score=37.26  Aligned_cols=35  Identities=11%  Similarity=0.163  Sum_probs=30.2

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.++|.|++- .|.+.|..|++.|+ +|.+.+++.
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~   42 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQ   42 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            578888889864 69999999999999 899999764

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.05  E-value=0.66  Score=37.43  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=27.7

Q ss_pred             CCeEEEECCCh--hHHHHHHHHHHc-CCCcEEEEecCCC
Q psy16201        145 DTKIALIGCGP--ASLSCATFLSRM-GYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~G~--~Gl~~a~~L~~~-G~~~V~v~e~~~~  180 (240)
                      +++||||=||-  .|+++|..|++. |. .|.+..|+..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~   39 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVT   39 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHH
Confidence            78998885554  468899999886 88 7999998753

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=83.03  E-value=0.72  Score=36.97  Aligned_cols=36  Identities=11%  Similarity=0.132  Sum_probs=30.7

Q ss_pred             CCCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCG-PASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|.++|.|++ -.|.+.|..|++.|+ +|.+.+++..
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~   40 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPE   40 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHH
Confidence            57888888875 469999999999999 8999998753

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.99  E-value=0.78  Score=37.80  Aligned_cols=36  Identities=11%  Similarity=0.170  Sum_probs=31.1

Q ss_pred             CCCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+|.++|.|++- .|.+.|..|++.|+ +|.+.+++.
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~   46 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKL   46 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            5688888989864 69999999999999 899999864

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=82.88  E-value=0.78  Score=36.70  Aligned_cols=37  Identities=16%  Similarity=0.165  Sum_probs=30.2

Q ss_pred             CCCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -.+|.|+|.|++- .|.+.|..|++.|+ +|.+..+...
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~   41 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSS   41 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCCh
Confidence            4688888888864 69999999999999 8988765543

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=82.87  E-value=0.4  Score=38.81  Aligned_cols=35  Identities=11%  Similarity=0.122  Sum_probs=30.2

Q ss_pred             CCeEEEECC-ChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        145 DTKIALIGC-GPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       145 ~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .|||+|.|+ |..|-..+..|.++|+ .|.+++....
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~-~vi~~~~~~~   37 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRTRDE   37 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT-EEEECCCTTT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcC-EEEEecCchh
Confidence            468999999 8999999999999999 7888876543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.86  E-value=0.7  Score=37.12  Aligned_cols=36  Identities=14%  Similarity=0.296  Sum_probs=30.8

Q ss_pred             CCCCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCG-PASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -.+|.++|.|++ -.|.+.|..|++.|+ +|.+.+++.
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~   40 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDE   40 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            358889999985 469999999999999 899999764

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=82.83  E-value=0.75  Score=37.33  Aligned_cols=35  Identities=9%  Similarity=0.170  Sum_probs=30.5

Q ss_pred             CCCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCG-PASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.++|.|++ -.|.+.|..|++.|+ +|.+.+++.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~   39 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSA   39 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            57889998985 579999999999999 899999864

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=82.78  E-value=0.63  Score=37.61  Aligned_cols=36  Identities=8%  Similarity=0.068  Sum_probs=29.9

Q ss_pred             CCCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCG-PASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ++|.++|.|++ -.|.+.|..|++.|+ +|.+.++...
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~   42 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKE   42 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcH
Confidence            46777888875 469999999999999 8999998754

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.73  E-value=0.47  Score=42.73  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=32.8

Q ss_pred             CCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+.+|+|||+|..|..+|..|+..|..+++|+|....
T Consensus        24 ~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v   60 (529)
T d1yova1          24 ESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQV   60 (529)
T ss_dssp             HHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcC
Confidence            3569999999999999999999999878999997653

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=82.43  E-value=0.79  Score=36.59  Aligned_cols=36  Identities=19%  Similarity=0.143  Sum_probs=30.5

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ++|.++|.|++- .|.+.|..|++.|+ +|.+.++...
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~   40 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPA   40 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCch
Confidence            577888888854 69999999999999 8999998764

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.37  E-value=0.74  Score=35.40  Aligned_cols=38  Identities=13%  Similarity=0.265  Sum_probs=33.6

Q ss_pred             CCCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        142 DFPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       142 ~~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      ...++++.|+|.|..|-..|..|...|. +|..|++...
T Consensus        41 ~l~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~   78 (184)
T d1ygya1          41 EIFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVS   78 (184)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSC
T ss_pred             cccceeeeeccccchhHHHHHHhhhccc-eEEeecCCCC
Confidence            3568899999999999999999998999 8999997653

>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.34  E-value=0.77  Score=32.40  Aligned_cols=68  Identities=21%  Similarity=0.393  Sum_probs=40.8

Q ss_pred             hcccCcCCCCccccCCCCCCChHHHHHHHhcCCHHHHHHHHHhhCCCCccccccCCCCCchhhhccccccCCCccccchh
Q psy16201         39 ASRCLKCADAPCQKSCPTQIDIKSFITSISHKNYYGAAKAIFSDNPLGLTCGMVCPTSDLCMGGCNLYAAEEGPINIGGL  118 (240)
Q Consensus        39 a~rC~~c~~~~C~~aCP~~~di~~~i~~i~~g~~~~A~~~i~~~np~p~~cgrvC~~~~~Ce~~C~r~~~~~~pV~I~~l  118 (240)
                      ...|++|....|+..||++.-.        .++-.      ..  ..|..| .-|.   .|..+|+.+...-..-....+
T Consensus         5 ~~~C~~C~~~~C~~~CP~~ai~--------~~~~~------~~--id~~~C-i~Cg---~C~~~CP~~ai~~~~~~~~~~   64 (106)
T d7fd1a_           5 TDNCIKCKYTDCVEVCPVDCFY--------EGPNF------LV--IHPDEC-IDCA---LCEPECPAQAIFSEDEVPEDM   64 (106)
T ss_dssp             CGGGTTTCCCHHHHHCTTCCEE--------ECSSC------EE--ECTTTC-CCCC---TTGGGCTTCCEEEGGGCCGGG
T ss_pred             CccCCCCCCCccccccCCCccc--------ccCCE------EE--EchHHC-CCCC---CccccCCCCCcccccccchhH
Confidence            4589999888999999987642        22200      00  123444 4555   699999976532112224566


Q ss_pred             hHHHHHHH
Q psy16201        119 QQFATEVF  126 (240)
Q Consensus       119 ~r~~~~~~  126 (240)
                      +.|+..+.
T Consensus        65 ~~~l~~n~   72 (106)
T d7fd1a_          65 QEFIQLNA   72 (106)
T ss_dssp             THHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776553

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.21  E-value=0.68  Score=35.33  Aligned_cols=30  Identities=10%  Similarity=0.040  Sum_probs=25.8

Q ss_pred             CCeEEEECC-ChhHHHHHHHHHHcCCCcEEEE
Q psy16201        145 DTKIALIGC-GPASLSCATFLSRMGYDDITIY  175 (240)
Q Consensus       145 ~~~VaViG~-G~~Gl~~a~~L~~~G~~~V~v~  175 (240)
                      .|+|+|.|+ |..|-..+..|.++|+ .+.|.
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~-~~~v~   32 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPT-LAKVI   32 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTT-CCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-eEEEE
Confidence            579999999 9999999999999998 44444

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=82.20  E-value=0.78  Score=36.95  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=30.9

Q ss_pred             CCCCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecCCCc
Q psy16201        143 FPDTKIALIGCG-PASLSCATFLSRMGYDDITIYEKNTYD  181 (240)
Q Consensus       143 ~~~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~~~~  181 (240)
                      -++|.++|.|++ -.|.+.|..|++.|+ +|.+.+++...
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~   54 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTE   54 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchH
Confidence            457888888864 568999999999999 89999877543

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.98  E-value=0.74  Score=35.39  Aligned_cols=37  Identities=16%  Similarity=0.133  Sum_probs=31.3

Q ss_pred             CCCCCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        142 DFPDTKIALIGCG-PASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       142 ~~~~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .-.+|+|+|||-+ ..|.-.|..|+++|. .|++++...
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga-TVt~~~~~~   63 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNN   63 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSE
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCC-EEEEecccc
Confidence            3568999999965 679999999999999 799987543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.45  E-value=0.65  Score=37.71  Aligned_cols=35  Identities=20%  Similarity=0.357  Sum_probs=29.7

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|.++|.|++- .|.+.|..|++.|+ +|.+.+++.
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~   38 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNE   38 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            477888888854 68999999999999 899999764

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=81.11  E-value=0.93  Score=36.37  Aligned_cols=36  Identities=6%  Similarity=0.038  Sum_probs=29.7

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      .+|.|+|.|++- .|.+.|..|++.|+ +|.+..+...
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~   40 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVE   40 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcc
Confidence            578899999864 69999999999999 7888865543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.07  E-value=0.68  Score=37.27  Aligned_cols=35  Identities=17%  Similarity=0.306  Sum_probs=28.7

Q ss_pred             CCCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCG-PASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.++|.|++ -.|.+.|..|++.|+ +|.+.+++.
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~   39 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHA   39 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            46677777775 468999999999999 899999864

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=81.05  E-value=0.9  Score=36.09  Aligned_cols=35  Identities=11%  Similarity=0.290  Sum_probs=30.6

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      .+|.++|.|++- .|.+.|..|++.|+ +|.+..++.
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~   39 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREE   39 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            578888989865 79999999999999 899998765

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.02  E-value=0.98  Score=36.11  Aligned_cols=36  Identities=8%  Similarity=0.011  Sum_probs=30.3

Q ss_pred             CCCCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCG-PASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -++|.++|.|++ -.|.+.|..|++.|+ +|.+.+++.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~   40 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILD   40 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            357788888885 469999999999999 899999865

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.86  E-value=1  Score=34.53  Aligned_cols=37  Identities=11%  Similarity=0.098  Sum_probs=32.7

Q ss_pred             CCCCeEEEECCC-hhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCG-PASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G-~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -.+++|+|||.+ ..|.-.|..|.++|. .|++++....
T Consensus        37 l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t~   74 (170)
T d1a4ia1          37 IAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKTA   74 (170)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCS
T ss_pred             cccceEEEEecCCccchHHHHHHHhccC-ceEEEecccc
Confidence            469999999997 589999999999999 7999998763

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=80.75  E-value=0.98  Score=35.00  Aligned_cols=37  Identities=14%  Similarity=0.299  Sum_probs=32.9

Q ss_pred             CCCCeEEEECCChhHHHHHHHHHHcCCCcEEEEecCCC
Q psy16201        143 FPDTKIALIGCGPASLSCATFLSRMGYDDITIYEKNTY  180 (240)
Q Consensus       143 ~~~~~VaViG~G~~Gl~~a~~L~~~G~~~V~v~e~~~~  180 (240)
                      -.+++|.|||.|..|-..|..|...|. +|..|+....
T Consensus        45 l~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   81 (191)
T d1gdha1          45 LDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRA   81 (191)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCC
T ss_pred             ecccceEEeecccchHHHHHHHHhhcc-cccccccccc
Confidence            458999999999999999999998999 8999997653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.61  E-value=0.79  Score=36.93  Aligned_cols=35  Identities=11%  Similarity=0.129  Sum_probs=30.0

Q ss_pred             CCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        144 PDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       144 ~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      ++|.++|.|++- .|.+.|..|++.|+ +|.+.+++.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~   42 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNE   42 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            578888888854 68999999999999 899999864

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.50  E-value=1  Score=35.00  Aligned_cols=37  Identities=11%  Similarity=0.279  Sum_probs=31.2

Q ss_pred             CCCeEEEECC-ChhHHHHHHHHHHcCC-CcEEEEecCCC
Q psy16201        144 PDTKIALIGC-GPASLSCATFLSRMGY-DDITIYEKNTY  180 (240)
Q Consensus       144 ~~~~VaViG~-G~~Gl~~a~~L~~~G~-~~V~v~e~~~~  180 (240)
                      .+++|+|.|+ |..|-.....|.++|. .+|+++.|++.
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~   51 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   51 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh
Confidence            3679999998 9999999999999983 26999998753

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.08  E-value=0.87  Score=37.64  Aligned_cols=36  Identities=14%  Similarity=0.215  Sum_probs=30.0

Q ss_pred             CCCCeEEEECCCh-hHHHHHHHHHHcCCCcEEEEecCC
Q psy16201        143 FPDTKIALIGCGP-ASLSCATFLSRMGYDDITIYEKNT  179 (240)
Q Consensus       143 ~~~~~VaViG~G~-~Gl~~a~~L~~~G~~~V~v~e~~~  179 (240)
                      -++|.++|.|++- .|.+.|..|++.|+ +|.+.++..
T Consensus         5 l~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~   41 (302)
T d1gz6a_           5 FDGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGG   41 (302)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCB
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCc
Confidence            4577888888864 68999999999999 899998764