Psyllid ID: psy1689

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------100
Protein Sequence
RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCLK
Secondary Structure (PSIPRED)
cccEEEEEEcccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHcccccccccEEEEEEcccHHcHHHHHHHHHcccccccccccccccccccHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHccccEEEcccccccccccccccccccccccHHccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccEEEEEcccccEEEcHHHHHHHHHcccccHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHccccccccccccccEEEEcccccEEEEcHHHHHHHHHcccccHHHHHHHHHccccccccccccHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccccEEcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccccHHHHHHHHHHHHHHHHccccccccccHHEEEEccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHHHcccccEHHHHHHHHHHHHHHHHccccEEEEEcHHccccccccccEEEcccccEEEEEEcccccEEHHHHHHHHcHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccEEEEHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccccccHHHHHHHHHHccccccccccccccccHHHHHccccccccccccEEEEEEEccEEEEccHHHHHHHHHcccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHcccEEcccccEEEEcccccccHHHHHHHHHHHHccccccEEEcccHHHcHHEEEEcHHHHHHHccccccccccccccHHHHHHHHHEccccccHHcHcccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHcccccccHEEEcccccccEcHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccHHHHHHcccccccEEEEHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHccccccEEEcccccccHHHHHccccccccccccEEEEEEEccEEEEEcHHHHHHHHHcccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHcccEEcccccEEEEcccccccHHHHHHHHHHHHccccccEEEcccHHHcHHEEEEcHHHHHHHccccccccccccccHHHHHHHHHEEcccccHHHcc
Coil and Loop (DISEMBL)
rpgafaiylepwhgdiFDFLELKkntgkeefrardlfyglwipdefmrrvesdaqwslmcpnacrglsdswgEKFDDLYKKYEAeglvyfrpgafaiylepwhgdiFDFLELKkntgkeefrardlfyglwipdefmrrvesdaqwslmcpntcrglsdswgeKFDDLYKKYEAEGKFIRQVPARKLWFAILDSqietgtpymlYKDACnrksnqqnlgtikcsNLCTEIVEYTSKDEVAVCNLASIALNMyinpadktynftkLKDVAKIVTKNLNkiidvnfypveearnsnmrhrpigigvqGLADLFIqmrlpfdcnesrlLNKQIFETIYYGALEASCEiaardgpyqtyegspvsqgilqydmwgvtptdlWDWAALKEKIAKHgvrnslliapmptastaqilgnnesfepytsniysrrVLSGEFQVVNHHLLRDLVELglwddnmkdqlivnngsiqdiegiPQKLKDLYKTVWEIPQKTVLDMAAdrgafidqsqSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYylrtkpaanaIQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRrdnkedcigvQGLADLFIqmrlpfdcnesrlLNKQIFETIYYGALEASCEiaardgpyqtyegspvsqgilqydmwgvtptdlWDWAALKVLALVYGLKLWFAILDSqietgtpymlYKDACNRKSNQQNLEVIEELYNMVnketgtrtpmisdKHYEIIMKNADRLnsaiiydrdfnynffgfkydmwgvtptdlWDWAALKEKIAKHgvrnslliapmptastaqilgnnesfepytsniysrrVLSGEFQVVNHHLLRDLVELglwddnmkdqlivnngsiqdiegiPQKLKDLYKTVWEIPQKTVLDMAAdrgafidqsqSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYylrtkpaanaIQFTIDKTKMANamaskdtrsqEEIQADQEQAMAAMICRrdnkedclk
Flexible Loop (DISEMBL)
rpgafaiylepwhgdiFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNqqnlgtikcSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKnlnkiidvnfypVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNngsiqdiegipQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMvnketgtrtpmisdKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNngsiqdiegipQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCLK
Low Complexity Region (SEG)
RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCLK
Disordered region (IsUnstruct)
***AFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID****************************AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID******************************************
Disordered Region (DISOPRED)
RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKK**********PGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS*****QEEIQADQEQAMAA**************QGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT********************************ICRRDNKEDCL*
Disordered Region (DISEMBL)
RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM*********************AMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM********************QAMAAMICRR********
Disordered Region (DISPRO)
RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAM******************MAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAM********************AMIC*R*NK**CL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	998	2.2.26 [Sep-21-2011]
P48591	812	Ribonucleoside-diphosphat	yes	N/A	0.503	0.618	0.699	0.0
P79732	794	Ribonucleoside-diphosphat	yes	N/A	0.498	0.627	0.717	0.0
P07742	792	Ribonucleoside-diphosphat	yes	N/A	0.496	0.626	0.711	0.0
P23921	792	Ribonucleoside-diphosphat	yes	N/A	0.496	0.626	0.711	0.0
Q5R919	792	Ribonucleoside-diphosphat	yes	N/A	0.496	0.626	0.709	0.0
Q03604	788	Ribonucleoside-diphosphat	yes	N/A	0.479	0.607	0.710	0.0
Q9UW15	929	Ribonucleoside-diphosphat	N/A	N/A	0.457	0.491	0.688	0.0
P36602	811	Ribonucleoside-diphosphat	yes	N/A	0.474	0.584	0.679	0.0
Q9SJ20	816	Ribonucleoside-diphosphat	yes	N/A	0.502	0.613	0.625	0.0
P50648	806	Ribonucleoside-diphosphat	N/A	N/A	0.508	0.629	0.624	0.0

>sp|P48591|RIR1_DROME Ribonucleoside-diphosphate reductase large subunit OS=Drosophila melanogaster GN=RnrL PE=1 SV=2

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/506 (69%), Positives = 431/506 (85%), Gaps = 4/506 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WG++F+ LY+KYE EG+  R V A+ LWFAI+++Q+ETG PYML+KDACN
Sbjct: 364 PHKCPGLHDVWGDEFEKLYEKYEQEGRANRTVKAQSLWFAIIEAQVETGNPYMLFKDACN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY++ DE+AVCNLASIALNM++ P +KTY+F KLK+V K
Sbjct: 424 RKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTP-EKTYDFKKLKEVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLNKIID+N+YP+ EAR SN+RHRP+GIG+QG AD  I MR P++  E+ LLN+QI
Sbjct: 483 IVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A  +GPY+TYEGSPVS+GILQYDMW   PT+LWDW  LKE I  H
Sbjct: 543 FETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDWQKLKESIRMH 602

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY+RRVLSGEFQVVNHHLLRDL EL LW
Sbjct: 603 GVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDLW 662

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+Q+I + GSIQ+IE IP K++DLYKTVWEI  K+ + MAADRGAFIDQSQS NI+
Sbjct: 663 DDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIH 722

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ-- 568
           +AE NY K++S+HF+ WK GLKTGMYYLRTKPAANAIQFT++K + A +M  ++  ++  
Sbjct: 723 VAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVSMNGQNGTAEGS 782

Query: 569 -EEIQADQEQAMAAMICRRDNKEDCI 593
            ++ + D+E+ MA M+C  +NK+ C+
Sbjct: 783 PQKYEEDRERKMADMVCSLENKDACM 808

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: 7EC: .EC: 4EC: .EC: 1

>sp|P79732|RIR1_DANRE Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio GN=rrm1 PE=2 SV=1

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/503 (71%), Positives = 420/503 (83%), Gaps = 5/503 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDFLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY KYE EG+  R V A++LW+AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PNDCPGLDECWGEEFEKLYAKYEQEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSN+QNLGTIKCSNLCTEIVEYTS DEVAVCNLASIALNMY+  +++T++F KL  V K
Sbjct: 413 RKSNRQNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVT-SERTFDFQKLASVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ KNLNKIID+N+YPV+EA NSN RHRPIGIGVQGLAD FI MR PF+  E++LLN QI
Sbjct: 472 VIVKNLNKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFESTEAQLLNTQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALE+SCE+AA  GPYQTY G PVS+GILQYDMW  TPTDLWDWAALKEKIA  
Sbjct: 532 FETIYYAALESSCELAAEYGPYQTYAGCPVSKGILQYDMWEKTPTDLWDWAALKEKIAND 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIY RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK+LYKTVWEI QKT+L MAADRGA+IDQSQSLNI+
Sbjct: 652 NEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWEISQKTILKMAADRGAYIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRTKP AN IQFT++K K+     +  +  +E 
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPGANPIQFTLNKEKLKETQKTTSSEDEE- 770

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+ +C+
Sbjct: 771 ---TKERNKAAMVCSLENRHECL 790

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

>sp|P07742|RIR1_MOUSE Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus GN=Rrm1 PE=1 SV=2

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 423/503 (84%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ P + TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTP-EHTYDFEKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A   GPY+TYEGSPVS+GILQYDMW V PTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAPTDLWDWKPLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +   +     +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKALKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+E+C+
Sbjct: 770 ----KERNTAAMVCSLENREECL 788

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

>sp|P23921|RIR1_HUMAN Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens GN=RRM1 PE=1 SV=1

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

>sp|Q5R919|RIR1_PONAB Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii GN=RRM1 PE=2 SV=1

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/503 (70%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCS+LCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

>sp|Q03604|RIR1_CAEEL Ribonucleoside-diphosphate reductase large subunit OS=Caenorhabditis elegans GN=rnr-1 PE=3 SV=1

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/484 (71%), Positives = 408/484 (84%), Gaps = 5/484 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+F+ L+KNTG EE RARDLF  LWIPD FM+RVE D +WSLMC
Sbjct: 299 RPGAFAIYLEPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMC 358

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL D WGE+F+ LY KYEAEG+  + V ARKLW  I+ +QIETG PY+ YKDA N
Sbjct: 359 PCECPGLDDCWGEEFEALYAKYEAEGRVRKTVKARKLWEHIVSNQIETGLPYITYKDAAN 418

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEI+EY++ DE+AVCNLASIALN Y+ P +K ++F KL +V K
Sbjct: 419 RKSNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYVTP-EKKFDFVKLAEVTK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLNKIIDVN+YPVEEARNSNMRHRPIG+GVQGLAD F+ MR PF   E+R LNK+I
Sbjct: 478 VITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSAEARDLNKRI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALEASCE+A  +GPY TYEGSPVS+G LQ+DMWGVTPTD  DWA L++KIAKH
Sbjct: 538 FETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQFDMWGVTPTDQCDWATLRKKIAKH 597

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIYSRRVLSG+FQ+VN H+L+DLVE GLW
Sbjct: 598 GIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHMLKDLVERGLW 657

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK++LI NNGSIQ+I+GIP  +K+LY+TVWEI QK +++MAADRGA+IDQSQSLNI+
Sbjct: 658 TDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGAYIDQSQSLNIH 717

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKD----AR 566
           MA+ +YA ++SMHF+GWK GLKTGMYYLRTKPA NA+QFT+DK  +     ++     A 
Sbjct: 718 MAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVDKNALKTNQQAETPATVAE 777

Query: 567 SQEE 570
           SQ+E
Sbjct: 778 SQDE 781

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

>sp|Q9UW15|RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rnr-1 PE=1 SV=2

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/466 (68%), Positives = 391/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + QW+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D +G++F+ LY+KYE EGK  + V A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PHECPGLADVYGDEFEALYEKYEKEGKGRKTVKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL+ +I+  + +Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENASYDFKKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N YPV+EA NSNMRHRPIG+GVQGLAD F+ +R+PFD + +  LN QI
Sbjct: 473 VVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDAASKLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC++A   GPY TYEGSPVSQGILQYDMW VTPT+LWDW ALK  I K+
Sbjct: 533 FETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTPTNLWDWTALKADIKKY 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LLRDLVE+GLW
Sbjct: 593 GVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDLVEMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I   GSIQ+I+ IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M E    K++SMHF GWK+GLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEAL 758

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

>sp|P36602|RIR1_SCHPO Ribonucleoside-diphosphate reductase large chain OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc22 PE=1 SV=2

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/480 (67%), Positives = 394/480 (82%), Gaps = 6/480 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA YLEPWH D+ DFLEL+K  G E+FRAR++FY LWIPD FM+RVE + QW+  C
Sbjct: 293 RPGAFAAYLEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWTFFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG++F  LY+KYE E +  R +PA+K+W+AIL SQ+ETG P+MLYKD+CN
Sbjct: 353 PNEAPGLADVWGDEFVALYEKYEKENRGRRSLPAQKVWYAILQSQVETGNPFMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+N+GTI+CSNLCTEIVEY+S DEVAVCNLAS+AL  +I   D  YNF KL DV K
Sbjct: 413 RKSNQKNVGTIRCSNLCTEIVEYSSPDEVAVCNLASVALPTFIK--DGKYNFQKLHDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNKIIDVN+YPV EAR SNMRHRP+G+GVQGLAD F  +RLPF+   ++ LN QI
Sbjct: 471 VVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCEIA  +G Y++YEGSP SQGILQYDMW V PTDLWDWA LKEKIAKH
Sbjct: 531 FETIYHAALEASCEIAQVEGTYESYEGSPASQGILQYDMWNVNPTDLWDWAELKEKIAKH 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSN+Y RRVLSGEFQ+VN  LL+DLVE  LW
Sbjct: 591 GIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLKDLVERDLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +++MK++L++ +GSIQ I  IPQ LKDLYKTVWEI QKTV+D AADRG FIDQSQSLNI+
Sbjct: 651 NEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPFIDQSQSLNIH 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           + + +Y K++SMHF+GWK GLKTGMYYLRT  A+ AI+FT+D      A+ +++  S EE
Sbjct: 711 LKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPV----ALRARNEESNEE 766

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

>sp|Q9SJ20|RIR1_ARATH Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana GN=RNR1 PE=1 SV=1

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/524 (62%), Positives = 402/524 (76%), Gaps = 23/524 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH D+++FLEL+KN GKEE RARDLFY LW+PD FM RV+++ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG +F+ LY KYE EGK  + V A++LW+ IL SQ+ETGTPYML+KD+CN
Sbjct: 353 PNEAPGLADCWGAEFETLYTKYEREGKAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN----PAD--------- 257
           RKSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL  ++     P D         
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPPKLAGS 472

Query: 258 -----KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
                + ++F KL +V   VT NLNKIIDVN+YPVE A+ SNMRHRPIGIGVQGLAD FI
Sbjct: 473 LDSKNRYFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK IFETIYY AL+AS E+AAR GPY+TY GSPVS+GILQ DMW V
Sbjct: 533 LLGMPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMWNV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P+D WDWA L++ I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 IPSDRWDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL ++GLW   +K++LI  NGSI ++  IP  LK +Y+TVWEI Q+TV+D
Sbjct: 653 FVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MAADRG +IDQSQSLNI+M + N+AK++S+HF+ WK GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTVD 772

Query: 553 KT--KMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
               K   ++A  D   +EE   D E  +A M+C   N E+C+ 
Sbjct: 773 TAMLKEKPSVAEGDKEVEEE---DNETKLAQMVCSLTNPEECLA 813

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. R1 contains the binding sites for both substrates and allosteric effectors and carries out the actual reduction of the ribonucleotide.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

>sp|P50648|RIR1_PLAF4 Ribonucleoside-diphosphate reductase large subunit OS=Plasmodium falciparum (isolate Dd2) GN=RNR1 PE=2 SV=1

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/516 (62%), Positives = 398/516 (77%), Gaps = 9/516 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ +  W+LMC
Sbjct: 291 RKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMC 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GLS++WGE+F+ LY KYE E    + V A+ LWFAIL SQIETG PYMLYKD+CN
Sbjct: 351 PNECPGLSETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPYMLYKDSCN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLC EI+EYTS DEVAVCNLASIAL  +++   K +NF KL ++ K
Sbjct: 411 AKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDLEKKEFNFKKLYEITK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+T+NL+KII+ N+YPV+EA+ SN RHRPIGIGVQGLAD F+ +R P++ + ++ LNK+I
Sbjct: 471 IITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYPYESDAAKELNKRI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV-TPTDLWDWAALKEKIAK 389
           FET+YY ALE S E+A+  GPY++Y+GSP SQGILQ+DMW        WDW  LK KI K
Sbjct: 531 FETMYYAALEMSVELASIHGPYESYQGSPASQGILQFDMWNAKVDNKYWDWDELKAKIRK 590

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+APMPTAST+QILGNNESFEPYTSNIY RRVLSGEF VVN HLL+DL + GL
Sbjct: 591 HGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGL 650

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WD++MK QLI +NGSIQ I  IP  LK+LYKTVWEI QK ++DMAADRG FIDQSQSLNI
Sbjct: 651 WDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRGIFIDQSQSLNI 710

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR--- 566
           Y+ +  +AK+SSMHF+GW+ GLKTG YYLRT+ A +AI+FT+D     NA+  K+A    
Sbjct: 711 YIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTHVAKNAVKLKNADGVQ 770

Query: 567 -----SQEEIQADQEQAMAAMICRRDNKEDCIGVQG 597
                S+E I  +          RR+N E C+   G
Sbjct: 771 ITREVSRETISTESTVTQNVCPLRRNNDEQCLMCSG 806

Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

Plasmodium falciparum (isolate Dd2) (taxid: 57267)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	998
158299261	809	AGAP010198-PA [Anopheles gambiae str. PE	0.503	0.620	0.738	0.0
157126851	844	ribonucleoside-diphosphate reductase lar	0.503	0.594	0.682	0.0
397531933	793	ribonucleotide reductase large subunit R	0.497	0.626	0.739	0.0
397531935	793	ribonucleotide reductase large subunit R	0.497	0.626	0.739	0.0
410915398	792	PREDICTED: ribonucleoside-diphosphate re	0.496	0.626	0.739	0.0
170038940	838	ribonucleoside-diphosphate reductase lar	0.503	0.599	0.674	0.0
321471172	798	hypothetical protein DAPPUDRAFT_302612 [	0.503	0.629	0.717	0.0
195578133	812	GD22272 [Drosophila simulans] gi|1941909	0.503	0.618	0.703	0.0
194859786	812	GG23946 [Drosophila erecta] gi|190661317	0.503	0.618	0.701	0.0
194761754	812	GF14111 [Drosophila ananassae] gi|190616	0.503	0.618	0.709	0.0

>gi|158299261|ref|XP_554103.3| AGAP010198-PA [Anopheles gambiae str. PEST] gi|157014280|gb|EAL39294.3| AGAP010198-PA [Anopheles gambiae str. PEST]

 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/505 (73%), Positives = 441/505 (87%), Gaps = 3/505 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWHGDIF+FL+LKKNTGKEE RARD+FY LWIPD FM+RVE++  WSLMC
Sbjct: 302 RPGAFAIYLEPWHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMQRVEANEMWSLMC 361

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD+WGE+F+ LY  YE EG+FIRQV A+ LWFAI++SQ+ETG PYMLYKDACN
Sbjct: 362 PHDCPGLSDTWGEEFEKLYTGYEKEGRFIRQVKAQDLWFAIIESQVETGVPYMLYKDACN 421

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY+SKDEVAVCNLASIALNM++   DKTY+F KLK+VAK
Sbjct: 422 RKSNQQNIGTIKCSNLCTEIVEYSSKDEVAVCNLASIALNMFVK-QDKTYDFAKLKEVAK 480

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLNKIIDVN+YPV EA+ SNMRHRPIGIGVQG+AD FI MR P++  E++ LN+QI
Sbjct: 481 TVTRNLNKIIDVNYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRYPYESEEAQKLNQQI 540

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+AARDGPY+TYEGSPVS+GILQY+MW   PTDLW+WA LKEKIAKH
Sbjct: 541 FETIYYGALEASCELAARDGPYETYEGSPVSKGILQYEMWNKEPTDLWNWAELKEKIAKH 600

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNESFEPYTSN+Y+RRVLSGEFQVVNHHLL+DL  +GLW
Sbjct: 601 GIRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEFQVVNHHLLQDLTNMGLW 660

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D +MK++++ NNGSIQ I  IPQ+++DLYKTVWEI  KT + MAADRGAFIDQSQS NI+
Sbjct: 661 DLDMKNEILSNNGSIQKIAAIPQEIRDLYKTVWEISVKTCIKMAADRGAFIDQSQSFNIH 720

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++S+HF+GWK+GLKTGMYYLRTKPA NAIQFT+DKTK+ N   S  +R   E
Sbjct: 721 VAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVDKTKLQNGNESNVSRMSNE 780

Query: 571 IQ--ADQEQAMAAMICRRDNKEDCI 593
               A++ + MA M+C  +NK++C+
Sbjct: 781 NGSFAERNRRMAEMVCSLENKDECM 805

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157126851|ref|XP_001660977.1| ribonucleoside-diphosphate reductase large chain [Aedes aegypti] gi|18087345|gb|AAL58843.1|AF411296_1 ribonucleotide reductase 1 [Aedes aegypti] gi|108873131|gb|EAT37356.1| AAEL010644-PA [Aedes aegypti]

 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/542 (68%), Positives = 444/542 (81%), Gaps = 40/542 (7%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWHGD+F+FL+LKKNTG E+ RARD+FY LWIPD FM+RVE++  W LMC
Sbjct: 300 RPGAFAIYLEPWHGDVFEFLDLKKNTGAEDVRARDMFYALWIPDLFMKRVEANEDWCLMC 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD+WGE+F+ LY  YEAEG++IR+V A+ LWFAI++SQ+ETG PYMLYKDACN
Sbjct: 360 PHECPGLSDTWGEEFEKLYTSYEAEGRYIRKVKAQDLWFAIIESQVETGVPYMLYKDACN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY+SKDE+AVCNLASIALNM++ P DKTY+F KLK+VAK
Sbjct: 420 RKSNQQNIGTIKCSNLCTEIVEYSSKDEIAVCNLASIALNMFVKP-DKTYDFQKLKEVAK 478

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I TKNLNKIID+NFYPV EA+ SNMRHRPIGIGVQG+AD FI MR P+D  E++ LN+QI
Sbjct: 479 IATKNLNKIIDINFYPVPEAKRSNMRHRPIGIGVQGMADAFILMRYPYDSEEAQKLNQQI 538

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++G Y+TY G PVS+G+LQYDMW   PTD+WDWAALKEKIAKH
Sbjct: 539 FETIYYGALEASCELAEKEGTYETYPGCPVSKGVLQYDMWNKEPTDMWDWAALKEKIAKH 598

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNESFEPYTSN+Y+RRVLSGEFQ+VNHHLL+DL EL LW
Sbjct: 599 GVRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEFQIVNHHLLKDLTELDLW 658

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+++I NNGSIQ+IE IPQ ++DLYKTVWEI  K+ + MAADRGAFIDQSQS NI+
Sbjct: 659 DDDMKNRIIANNGSIQNIEEIPQHIRDLYKTVWEISVKSCIKMAADRGAFIDQSQSFNIH 718

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM-------------- 556
           +AE NY K++S+HF+GWK+GLKTGMYYLRTKPA NAIQFT+DKT++              
Sbjct: 719 VAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVDKTRLNQSNRINNSDTVNG 778

Query: 557 --------------ANAMASKDA--------RSQEEI---QADQEQAMAAMICRRDNKED 591
                          N  A+  A         SQ+++    A++ + MA M+C  +NKED
Sbjct: 779 SPSKMNGATSTPSKMNGTATSSASPVKASSDNSQQQLNGSHAERNRRMAEMVCSLENKED 838

Query: 592 CI 593
           C+
Sbjct: 839 CM 840

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|397531933|gb|AFO54476.1| ribonucleotide reductase large subunit R1i [Carassius carassius]

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/503 (73%), Positives = 428/503 (85%), Gaps = 6/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDFLELKKNTGKEE RARDLFY LWIPD FM+RVE++  W LMC
Sbjct: 293 RPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWCLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F++LY KYE EGK  R V A++LW AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PNDCPGLDECWGEEFENLYTKYEKEGKAKRVVKAQQLWHAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ P ++T++F KL  V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASVALNMYVTP-ERTFDFQKLASVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ KNLNKIID+N+YPV+EA NSN RHRPIGIGVQGLAD FI MR PF+  E++LLN QI
Sbjct: 472 VIVKNLNKIIDINYYPVQEAENSNKRHRPIGIGVQGLADAFILMRFPFESAEAQLLNTQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALE+SCE+AA  GPY+TY GSPVS+GILQYDMW  TPTDLWDW ALKEKIAKH
Sbjct: 532 FETIYYAALESSCELAAEFGPYETYAGSPVSKGILQYDMWDKTPTDLWDWEALKEKIAKH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+QLI  NGSIQ I  IP  LK+LYKTVWEI QKT+L MAADRGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQLIAQNGSIQGIPTIPDDLKELYKTVWEISQKTILKMAADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRTKPAAN IQFT++K K+      K A ++EE
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNKEKLKE--TQKSASNEEE 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
           I   +E  MAAM+C  +N+++C+
Sbjct: 770 I---KELNMAAMVCSLENRDECL 789

Source: Carassius carassius

Species: Carassius carassius

Genus: Carassius

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397531935|gb|AFO54477.1| ribonucleotide reductase large subunit R1ii [Carassius carassius]

 Score =  793 bits (2047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/503 (73%), Positives = 429/503 (85%), Gaps = 6/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDFLELKKNTGKEE RARDLFY LWIPD FM+RVE++A WSLMC
Sbjct: 293 RPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNADWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WGE+F+ LY KYE EG+  R V A++LW+AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PSDCPGLDECWGEEFEKLYMKYEQEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMY+ P ++T++F KL  V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTP-ERTFDFQKLASVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ KNLNKIIDVN+YPV EA NSN RHRPIGIGVQGLAD FI MR PF+  E++LLN QI
Sbjct: 472 VIVKNLNKIIDVNYYPVREAENSNKRHRPIGIGVQGLADAFILMRFPFESAEAQLLNTQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALE+SCE+AA  GPY+TY GSPVS+GILQYDMW  TPTDLWDWAALKEKI KH
Sbjct: 532 FETIYYAALESSCELAAECGPYETYAGSPVSKGILQYDMWEKTPTDLWDWAALKEKITKH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+QLI  NGSIQ I  IP  LK+LYKTVWEI QKT+L MAADRGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQLIAQNGSIQAIPTIPDDLKELYKTVWEISQKTILKMAADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRTKPAAN IQFT+DK K+     ++++ S EE
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLDKEKLKE---TQESTSNEE 768

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 769 --ETKERNKAAMVCSLENRDECL 789

Source: Carassius carassius

Species: Carassius carassius

Genus: Carassius

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410915398|ref|XP_003971174.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like isoform 1 [Takifugu rubripes]

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/503 (73%), Positives = 429/503 (85%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+F FLELKKNTGKEE RARDLF+ LWIPD FM+RVES+  WSLMC
Sbjct: 293 RPGAFAVYLEPWHSDVFAFLELKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WGE+F++LY +YE EG+  R V A++LW+AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PSECPGLIDCWGEEFEELYTRYEKEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEIVEYTSKDEVAVCNLASIALNMY+ P  +TY+F KL  V K
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIVEYTSKDEVAVCNLASIALNMYVTP-QRTYDFNKLASVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ +NLNKIID+N+YPV EAR SNMRHRPIGIGVQGLAD FI MR P++  E++LLN QI
Sbjct: 472 IIVRNLNKIIDINYYPVPEARRSNMRHRPIGIGVQGLADAFILMRHPYESPEAQLLNIQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALEASCE+AA  GPY+TY GSPVS+G+LQYDMWG TPTDLWDW ALKEKIAKH
Sbjct: 532 FETIYYAALEASCELAAEFGPYETYAGSPVSKGVLQYDMWGKTPTDLWDWNALKEKIAKH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES E YTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+QLI +NGSIQDI+ IP  LK LYKTVWEI QKTVL MAADRGA+IDQSQSLNI+
Sbjct: 652 SDAMKNQLIAHNGSIQDIQEIPDDLKQLYKTVWEISQKTVLKMAADRGAYIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE  Y K++SMHF+GWKLGLKTGMYYLRTKPAAN IQFT+++ K+  A   + A+S+EE
Sbjct: 712 IAEPTYGKLTSMHFYGWKLGLKTGMYYLRTKPAANPIQFTLNREKLKEA---QSAKSKEE 768

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+ MAAM+C   NK++C+
Sbjct: 769 A---KERNMAAMVCSLANKDECM 788

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|170038940|ref|XP_001847305.1| ribonucleoside-diphosphate reductase large subunit [Culex quinquefasciatus] gi|167862546|gb|EDS25929.1| ribonucleoside-diphosphate reductase large subunit [Culex quinquefasciatus]

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/543 (67%), Positives = 438/543 (80%), Gaps = 41/543 (7%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWHGDIF+FL+LKKNTGKEE RARD+FY LWIPD FM+RVE++  W LMC
Sbjct: 293 RPGAFAIYLEPWHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMKRVEANEDWCLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL ++WGE+F+ LY  YE EG++IR+V A+ LWFAI++SQ+ETG PYMLYKDACN
Sbjct: 353 PHDCPGLPETWGEEFEKLYTTYENEGRYIRKVKAQDLWFAIIESQVETGVPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY+SKDE+AVCNLASIA+NM++ P DK+Y+F KLK+V+K
Sbjct: 413 RKSNQQNIGTIKCSNLCTEIVEYSSKDEIAVCNLASIAVNMFVKP-DKSYDFQKLKEVSK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLNKIID+N+YPV EA+ SNMRHRPIGIGVQG+AD FI MR P++  E++ LN+QI
Sbjct: 472 IVTKNLNKIIDINYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRFPYESEEAQKLNQQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCEIA +DG Y+TY+G PVS+GILQYDMW   P+DLWDWA LKEKIAKH
Sbjct: 532 FETIYYGALEASCEIAEKDGTYETYDGCPVSKGILQYDMWNKAPSDLWDWAPLKEKIAKH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNESFEPYTSN+Y+RRVLSGEFQVVNHHLL+DL EL LW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEFQVVNHHLLKDLTELELW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+++I +NGSIQ I+ IP+ +++LYKTVWEI  KT + MAADRGAFIDQSQS NI+
Sbjct: 652 DDDMKNKIIASNGSIQHIDEIPKHIRELYKTVWEISVKTCIKMAADRGAFIDQSQSFNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN------------ 558
           +AE NY K++S+HF+GWK+GLKTGMYYLRTKPA NAIQFT+DK K+              
Sbjct: 712 VAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVDKVKLGQTQSAQNGTTSPS 771

Query: 559 --------------------AMASKDA--------RSQEEIQADQEQAMAAMICRRDNKE 590
                               AMA   A         S     A++ + MA M+C  +NKE
Sbjct: 772 KSMLMNGSSTPRKMNGESSMAMADTSAIAAGTAGETSMNGSYAERNRRMAEMVCSLENKE 831

Query: 591 DCI 593
           DC+
Sbjct: 832 DCM 834

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321471172|gb|EFX82145.1| hypothetical protein DAPPUDRAFT_302612 [Daphnia pulex]

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/503 (71%), Positives = 430/503 (85%), Gaps = 1/503 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FDFL+LKKNTGKEE RARDLFY LWIPD FMRRVESD  WSLMC
Sbjct: 293 RPGAFAIYLEPWHSDVFDFLDLKKNTGKEENRARDLFYALWIPDLFMRRVESDGDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D+WGE+F+ LY KYE  G + R+V A++LWFA+++SQIETGTPY+LYKDACN
Sbjct: 353 PHECPGLADTWGEEFEALYTKYEESGMYRRKVKAQQLWFAVIESQIETGTPYILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEY+S +EVAVCNL SIALNM++ P DKT++  KLK+V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYSSPEEVAVCNLGSIALNMFVKP-DKTFDIPKLKEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLNKII++N+YPV EA+ SN RHRPIGIGVQGLAD FI MR PFD  E++LLNK I
Sbjct: 472 VLTRNLNKIIEINYYPVPEAKRSNFRHRPIGIGVQGLADAFILMRYPFDSEEAQLLNKHI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A + G Y++Y G PVS+GILQYDMWGVTPTDLWDWAALK+KI +H
Sbjct: 532 FETIYYGALEASCELAEQLGTYESYPGCPVSKGILQYDMWGVTPTDLWDWAALKKKINEH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES E YTSNIY RRVLSGEFQVVNHHLLRDL E GLW
Sbjct: 592 GLRNSLLLAPMPTASTAQILGNNESIEAYTSNIYVRRVLSGEFQVVNHHLLRDLTEGGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++++K+ +I NNGSIQ+I+GIP  LK LYKTVWEIPQ+ V+ MAADRGAFIDQSQSLNI+
Sbjct: 652 NEDVKNGIIANNGSIQNIDGIPDDLKALYKTVWEIPQRIVIKMAADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+ WKLGLKTGMYYLRTKPAA+AIQFT+DK+K+       ++     
Sbjct: 712 IAEPNYGKLTSMHFYSWKLGLKTGMYYLRTKPAASAIQFTVDKSKLKKMNGVDNSAGATN 771

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
              ++++   AM+C   N++DC+
Sbjct: 772 GNDEEKRNREAMVCSLQNRDDCL 794

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195578133|ref|XP_002078920.1| GD22272 [Drosophila simulans] gi|194190929|gb|EDX04505.1| GD22272 [Drosophila simulans]

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/506 (70%), Positives = 433/506 (85%), Gaps = 4/506 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY+KYE EG+  R V A+ LWFAI+++Q+ETG PYML+KDACN
Sbjct: 364 PHKCPGLHEVWGDEFEKLYEKYEQEGRANRTVKAQSLWFAIIEAQVETGNPYMLFKDACN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY+S DE+AVCNLASIALNM++ P +KTY+F KLK+V K
Sbjct: 424 RKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMFVTP-EKTYDFKKLKEVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLNKIID+N+YP+ EAR SN+RHRP+GIG+QG AD  I MR P++  E+ LLN+QI
Sbjct: 483 IVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A  +GPY+TYEGSPVS+GILQYDMW   PT+LWDW  LKE I KH
Sbjct: 543 FETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDWQKLKESIKKH 602

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY+RRVLSGEFQVVNHHLLRDL EL LW
Sbjct: 603 GVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDLW 662

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+Q+I + GSIQ+IE IPQK++DLYKTVWEI  K+ + MAADRGAFIDQSQS NI+
Sbjct: 663 DDDMKNQIISSRGSIQNIETIPQKVRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIH 722

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ-- 568
           +AE NY K++S+HF+ WK GLKTGMYYLRTKPAANAIQFT++K + A +M  ++  ++  
Sbjct: 723 VAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVSMNGQNGTAEGS 782

Query: 569 -EEIQADQEQAMAAMICRRDNKEDCI 593
            ++ + D+E+ MA M+C  +NK+ C+
Sbjct: 783 PQKYEEDRERKMADMVCSLENKDACM 808

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194859786|ref|XP_001969450.1| GG23946 [Drosophila erecta] gi|190661317|gb|EDV58509.1| GG23946 [Drosophila erecta]

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/506 (70%), Positives = 431/506 (85%), Gaps = 4/506 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WG++F+ LY+KYE EG+  R V A+ LW+AI+++Q+ETG PYML+KDACN
Sbjct: 364 PHKCPGLQDVWGDEFEKLYEKYEQEGRANRTVKAQSLWYAIIEAQVETGNPYMLFKDACN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY++ DE+AVCNLASIALNM++ P +KTY+F KLK+V K
Sbjct: 424 RKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTP-EKTYDFKKLKEVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLNKIID+N+YP+ EAR SN+RHRP+GIG+QG AD  I MR P++  E+ LLN+QI
Sbjct: 483 IVTRNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A  +GPY+TYEGSPVS+GILQYDMW   PT+LWDW  LKE I KH
Sbjct: 543 FETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDWQKLKESIKKH 602

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY+RRVLSGEFQVVNHHLLRDL EL LW
Sbjct: 603 GVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDLW 662

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+Q+I + GSIQ+IE IPQ+++DLYKTVWEI  K+ + MAADRGAFIDQSQS NI+
Sbjct: 663 DDDMKNQIISSRGSIQNIEAIPQRVRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIH 722

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE- 569
           +AE NY K++S+HF+ WK GLKTGMYYLRTKPAANAIQFT++K K A  +  ++  S E 
Sbjct: 723 VAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKKGAEGINGQNGTSDES 782

Query: 570 --EIQADQEQAMAAMICRRDNKEDCI 593
             + + D+E+ MA M+C  +NK+ C+
Sbjct: 783 SKQFEEDRERKMADMVCSLENKDACM 808

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194761754|ref|XP_001963091.1| GF14111 [Drosophila ananassae] gi|190616788|gb|EDV32312.1| GF14111 [Drosophila ananassae]

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/506 (70%), Positives = 429/506 (84%), Gaps = 4/506 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+LKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLFYALWIPDLFMKRVEANEDWSLMC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WG++F+ LY KYE EG+  R V A+ LWFAI++SQ+ETG PYML+KDACN
Sbjct: 364 PHKCPGLHDVWGDEFEKLYVKYEQEGRANRTVKAQSLWFAIIESQVETGNPYMLFKDACN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY+S DE+AVCNLASIALNM++ P +KTY+F KLK+V K
Sbjct: 424 RKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMFVTP-EKTYDFKKLKEVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            V +NLNKIID+NFYP+ EA+ SNMRHRPIGIGVQGLAD  I MR P++  E+ LLN+QI
Sbjct: 483 TVARNLNKIIDINFYPLPEAKKSNMRHRPIGIGVQGLADALILMRYPYESEEASLLNQQI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GALEASCE+A +DG Y+TYEGSPVS+GILQYDMW  TPT LWDW +LKE I +H
Sbjct: 543 FETIYFGALEASCELAQKDGTYETYEGSPVSKGILQYDMWDKTPTGLWDWKSLKESIKQH 602

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY+RRVLSGEFQVVNHHLLRDL EL LW
Sbjct: 603 GVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDLW 662

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+Q+I + GSIQ+IE IPQK++DLYKTVWEI  K+ + MAADRGAFIDQSQS NI+
Sbjct: 663 DDDMKNQIISSRGSIQNIESIPQKVRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIH 722

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++S+HF+ WK GLKTGMYYLRTKPAANAIQFT+DK   A  +  ++   +E 
Sbjct: 723 VAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVDKKMSALKINGQNGVKEES 782

Query: 571 IQ---ADQEQAMAAMICRRDNKEDCI 593
            Q   +D+E+ MA M+C  +NK+ C+
Sbjct: 783 AQDYESDRERKMADMVCSLENKDACM 808

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	998
FB|FBgn0011703	812	RnrL "Ribonucleoside diphospha	0.503	0.618	0.699	1.5e-202
RGD|1592569	792	Rrm1 "ribonucleotide reductase	0.496	0.626	0.717	2.4e-202
ZFIN|ZDB-GENE-990415-247	794	rrm1 "ribonucleotide reductase	0.498	0.627	0.721	3.9e-202
MGI|MGI:98180	792	Rrm1 "ribonucleotide reductase	0.496	0.626	0.717	6.4e-202
UNIPROTKB|F1SUZ5	789	F1SUZ5 "Uncharacterized protei	0.508	0.642	0.704	8.2e-202
UNIPROTKB|F1MSF1	791	RRM1 "Ribonucleoside-diphospha	0.495	0.625	0.719	1e-201
UNIPROTKB|P23921	792	RRM1 "Ribonucleoside-diphospha	0.496	0.626	0.719	2.2e-201
UNIPROTKB|E9PD78	695	RRM1 "Ribonucleoside-diphospha	0.496	0.713	0.719	2.2e-201
UNIPROTKB|E9PL69	570	RRM1 "Ribonucleoside-diphospha	0.496	0.870	0.719	2.2e-201
UNIPROTKB|Q5R919	792	RRM1 "Ribonucleoside-diphospha	0.496	0.626	0.717	9.4e-201

FB|FBgn0011703 RnrL "Ribonucleoside diphosphate reductase large subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 1960 (695.0 bits), Expect = 1.5e-202, P = 1.5e-202
 Identities = 354/506 (69%), Positives = 431/506 (85%)

Query:    91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
             RPGAFAIYLEPWH D+F+FLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct:   304 RPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMC 363

Query:   151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
             P+ C GL D WG++F+ LY+KYE EG+  R V A+ LWFAI+++Q+ETG PYML+KDACN
Sbjct:   364 PHKCPGLHDVWGDEFEKLYEKYEQEGRANRTVKAQSLWFAIIEAQVETGNPYMLFKDACN 423

Query:   211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
             RKSNQQN+GTIKCSNLCTEIVEY++ DE+AVCNLASIALNM++ P +KTY+F KLK+V K
Sbjct:   424 RKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTP-EKTYDFKKLKEVTK 482

Query:   271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             IVTKNLNKIID+N+YP+ EAR SN+RHRP+GIG+QG AD  I MR P++  E+ LLN+QI
Sbjct:   483 IVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQI 542

Query:   331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
             FETIYYGALEASCE+A  +GPY+TYEGSPVS+GILQYDMW   PT+LWDW  LKE I  H
Sbjct:   543 FETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDWQKLKESIRMH 602

Query:   391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
             GVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY+RRVLSGEFQVVNHHLLRDL EL LW
Sbjct:   603 GVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDLW 662

Query:   451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
             DD+MK+Q+I + GSIQ+IE IP K++DLYKTVWEI  K+ + MAADRGAFIDQSQS NI+
Sbjct:   663 DDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIH 722

Query:   511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ-- 568
             +AE NY K++S+HF+ WK GLKTGMYYLRTKPAANAIQFT++K + A +M  ++  ++  
Sbjct:   723 VAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVSMNGQNGTAEGS 782

Query:   569 -EEIQADQEQAMAAMICRRDNKEDCI 593
              ++ + D+E+ MA M+C  +NK+ C+
Sbjct:   783 PQKYEEDRERKMADMVCSLENKDACM 808

GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=ISS

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=ISS;NAS

GO:0006260 "DNA replication" evidence=IEA;NAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0042246 "tissue regeneration" evidence=IMP

RGD|1592569 Rrm1 "ribonucleotide reductase M1" [Rattus norvegicus (taxid:10116)]

 Score = 1958 (694.3 bits), Expect = 2.4e-202, P = 2.4e-202
 Identities = 361/503 (71%), Positives = 429/503 (85%)

Query:    91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
             RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct:   293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query:   151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
             PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct:   353 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query:   211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
             RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ P + TY+F KL +V K
Sbjct:   413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTP-EHTYDFEKLAEVTK 471

Query:   271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct:   472 VIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query:   331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
             FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct:   532 FETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 591

Query:   391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
             G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct:   592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query:   451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
             ++ MK+Q+I  NGSIQ I  IP+ LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct:   652 NEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query:   511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
             +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +    + A  +EE
Sbjct:   712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKD---KEKALKEEE 768

Query:   571 IQADQEQAMAAMICRRDNKEDCI 593
                ++E+  AAM+C  +N+E+C+
Sbjct:   769 ---EKERNTAAMVCSLENREECL 788

GO:0000278 "mitotic cell cycle" evidence=IEP

GO:0003674 "molecular_function" evidence=ND

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006206 "pyrimidine nucleobase metabolic process" evidence=IEP

GO:0008584 "male gonad development" evidence=IEP

GO:0010212 "response to ionizing radiation" evidence=IEP

GO:0021846 "cell proliferation in forebrain" evidence=IEP

GO:0042995 "cell projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0060041 "retina development in camera-type eye" evidence=IEP

ZFIN|ZDB-GENE-990415-247 rrm1 "ribonucleotide reductase M1 polypeptide" [Danio rerio (taxid:7955)]

 Score = 1956 (693.6 bits), Expect = 3.9e-202, P = 3.9e-202
 Identities = 363/503 (72%), Positives = 421/503 (83%)

Query:    91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
             RPGAFA+YLEPWH DIFDFLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct:   293 RPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMC 352

Query:   151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
             PN C GL + WGE+F+ LY KYE EG+  R V A++LW+AI++SQ ETGTPYMLYKDACN
Sbjct:   353 PNDCPGLDECWGEEFEKLYAKYEQEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACN 412

Query:   211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
             RKSN+QNLGTIKCSNLCTEIVEYTS DEVAVCNLASIALNMY+  +++T++F KL  V K
Sbjct:   413 RKSNRQNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVT-SERTFDFQKLASVTK 471

Query:   271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             ++ KNLNKIID+N+YPV+EA NSN RHRPIGIGVQGLAD FI MR PF+  E++LLN QI
Sbjct:   472 VIVKNLNKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFESTEAQLLNTQI 531

Query:   331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
             FETIYY ALE+SCE+AA  GPYQTY G PVS+GILQYDMW  TPTDLWDWAALKEKIA  
Sbjct:   532 FETIYYAALESSCELAAEYGPYQTYAGCPVSKGILQYDMWEKTPTDLWDWAALKEKIAND 591

Query:   391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
             GVRNSLL+APMPTASTAQILGNNES EPYTSNIY RRVLSGEFQ+VN HLL+DL E GLW
Sbjct:   592 GVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLSGEFQIVNPHLLKDLTERGLW 651

Query:   451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
             ++ MK+Q+I  NGSIQ I  IP  LK+LYKTVWEI QKT+L MAADRGA+IDQSQSLNI+
Sbjct:   652 NEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWEISQKTILKMAADRGAYIDQSQSLNIH 711

Query:   511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
             +AE NY K++SMHF+GWK GLKTGMYYLRTKP AN IQFT++K K+      K   S++E
Sbjct:   712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPGANPIQFTLNKEKLKETQ--KTTSSEDE 769

Query:   571 IQADQEQAMAAMICRRDNKEDCI 593
                 +E+  AAM+C  +N+ +C+
Sbjct:   770 --ETKERNKAAMVCSLENRHECL 790

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=IEA;ISS

GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

MGI|MGI:98180 Rrm1 "ribonucleotide reductase M1" [Mus musculus (taxid:10090)]

 Score = 1954 (692.9 bits), Expect = 6.4e-202, P = 6.4e-202
 Identities = 361/503 (71%), Positives = 427/503 (84%)

Query:    91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
             RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct:   293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query:   151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
             PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct:   353 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query:   211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
             RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ P + TY+F KL +V K
Sbjct:   413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTP-EHTYDFEKLAEVTK 471

Query:   271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct:   472 VIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query:   331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
             FETIYYGALEASCE+A   GPY+TYEGSPVS+GILQYDMW V PTDLWDW  LKEKIAK+
Sbjct:   532 FETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAPTDLWDWKPLKEKIAKY 591

Query:   391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
             G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct:   592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query:   451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
             ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct:   652 NEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query:   511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
             +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +    + A  +EE
Sbjct:   712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKD---KEKALKEEE 768

Query:   571 IQADQEQAMAAMICRRDNKEDCI 593
                ++E+  AAM+C  +N+E+C+
Sbjct:   769 ---EKERNTAAMVCSLENREECL 788

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0017076 "purine nucleotide binding" evidence=IDA

GO:0051259 "protein oligomerization" evidence=IPI

GO:0051290 "protein heterotetramerization" evidence=IPI

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|F1SUZ5 F1SUZ5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1953 (692.5 bits), Expect = 8.2e-202, P = 8.2e-202
 Identities = 364/517 (70%), Positives = 434/517 (83%)

Query:    79 YKKYEAEGLVYF--RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEF 136
             + KY    +  F  RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD F
Sbjct:   277 WHKYSVSLIPRFLHRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLF 336

Query:   137 MRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQI 196
             M+RVE++  WSLMCPN C GL + WGE+F+ LY+ YE +G   + V A++LW+AI++SQ 
Sbjct:   337 MKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYERQGHVRKVVKAQQLWYAIIESQT 396

Query:   197 ETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPA 256
             ETGTPYMLYKD+CNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  +
Sbjct:   397 ETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-S 455

Query:   257 DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRL 316
             + TY+FTKL +V K++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI MR 
Sbjct:   456 EHTYDFTKLAEVTKVIVRNLNKIIDINYYPIPEASLSNKRHRPIGIGVQGLADAFILMRY 515

Query:   317 PFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD 376
             PF+  E++LLNKQIFETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTD
Sbjct:   516 PFESPEAQLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTD 575

Query:   377 LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVV 436
             LWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+V
Sbjct:   576 LWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 635

Query:   437 NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAAD 496
             N HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+
Sbjct:   636 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 695

Query:   497 RGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
             RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+
Sbjct:   696 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKL 755

Query:   557 ANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCI 593
              +    K+  S+EE   ++E+  AAM+C  +N+++C+
Sbjct:   756 KD----KEKVSKEE---EKERNTAAMVCSLENRDECL 785

GO:0006260 "DNA replication" evidence=IEA

GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=IEA

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=IEA

UNIPROTKB|F1MSF1 RRM1 "Ribonucleoside-diphosphate reductase" [Bos taurus (taxid:9913)]

 Score = 1952 (692.2 bits), Expect = 1.0e-201, P = 1.0e-201
 Identities = 362/503 (71%), Positives = 430/503 (85%)

Query:    91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
             RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct:   293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query:   151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
             PN C GL + WGE+F+ LY++YE EG+  + + A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct:   353 PNECPGLDEVWGEEFEKLYERYEKEGRVRKVIKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query:   211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
             RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+FTKL +V K
Sbjct:   413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFTKLAEVTK 471

Query:   271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             ++ +NLNKIID+N+YPV EA  SN  HRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct:   472 VIVRNLNKIIDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query:   331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
             FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct:   532 FETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWDWNLLKEKIAKY 591

Query:   391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
             GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct:   592 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query:   451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
             ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct:   652 NEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query:   511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
             +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +    K+  S+EE
Sbjct:   712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKD----KEKVSKEE 767

Query:   571 IQADQEQAMAAMICRRDNKEDCI 593
                ++E+  AAM+C  +N+++C+
Sbjct:   768 ---EKERNTAAMVCSLENRDECL 787

GO:0006260 "DNA replication" evidence=IEA

GO:0051290 "protein heterotetramerization" evidence=IEA

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=IEA

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=IEA

GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P23921 RRM1 "Ribonucleoside-diphosphate reductase large subunit" [Homo sapiens (taxid:9606)]

 Score = 1949 (691.1 bits), Expect = 2.2e-201, P = 2.2e-201
 Identities = 362/503 (71%), Positives = 427/503 (84%)

Query:    91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
             RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct:   293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query:   151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
             PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct:   353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query:   211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
             RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct:   413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471

Query:   271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct:   472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531

Query:   331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
             FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct:   532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 591

Query:   391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
             G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct:   592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query:   451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct:   652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query:   511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
             +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +    K+  S+EE
Sbjct:   712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKD----KEKVSKEE 767

Query:   571 IQADQEQAMAAMICRRDNKEDCI 593
                ++E+  AAM+C  +N+++C+
Sbjct:   768 --EEKERNTAAMVCSLENRDECL 788

GO:0005524 "ATP binding" evidence=IEA

GO:0051290 "protein heterotetramerization" evidence=IEA

GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=NAS

GO:0006260 "DNA replication" evidence=IEA;NAS

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=ISS;NAS

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=ISS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E9PD78 RRM1 "Ribonucleoside-diphosphate reductase" [Homo sapiens (taxid:9606)]

 Score = 1949 (691.1 bits), Expect = 2.2e-201, P = 2.2e-201
 Identities = 362/503 (71%), Positives = 427/503 (84%)

Query:    91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
             RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct:   196 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 255

Query:   151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
             PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct:   256 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 315

Query:   211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
             RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct:   316 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 374

Query:   271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct:   375 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 434

Query:   331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
             FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct:   435 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 494

Query:   391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
             G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct:   495 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 554

Query:   451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct:   555 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 614

Query:   511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
             +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +    K+  S+EE
Sbjct:   615 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKD----KEKVSKEE 670

Query:   571 IQADQEQAMAAMICRRDNKEDCI 593
                ++E+  AAM+C  +N+++C+
Sbjct:   671 --EEKERNTAAMVCSLENRDECL 691

GO:0005524 "ATP binding" evidence=IEA

GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=IEA

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=IEA

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=IEA

GO:0051290 "protein heterotetramerization" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E9PL69 RRM1 "Ribonucleoside-diphosphate reductase large subunit" [Homo sapiens (taxid:9606)]

 Score = 1949 (691.1 bits), Expect = 2.2e-201, P = 2.2e-201
 Identities = 362/503 (71%), Positives = 427/503 (84%)

Query:    91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
             RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct:    71 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 130

Query:   151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
             PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct:   131 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 190

Query:   211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
             RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct:   191 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 249

Query:   271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct:   250 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 309

Query:   331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
             FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct:   310 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 369

Query:   391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
             G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct:   370 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 429

Query:   451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct:   430 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 489

Query:   511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
             +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +    K+  S+EE
Sbjct:   490 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKD----KEKVSKEE 545

Query:   571 IQADQEQAMAAMICRRDNKEDCI 593
                ++E+  AAM+C  +N+++C+
Sbjct:   546 --EEKERNTAAMVCSLENRDECL 566

GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=IEA

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=IEA

GO:0017076 "purine nucleotide binding" evidence=IEA

GO:0051290 "protein heterotetramerization" evidence=IEA

UNIPROTKB|Q5R919 RRM1 "Ribonucleoside-diphosphate reductase large subunit" [Pongo abelii (taxid:9601)]

 Score = 1943 (689.0 bits), Expect = 9.4e-201, P = 9.4e-201
 Identities = 361/503 (71%), Positives = 427/503 (84%)

Query:    91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
             RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct:   293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query:   151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
             PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct:   353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query:   211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
             RKSNQQNLGTIKCS+LCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct:   413 RKSNQQNLGTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471

Query:   271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct:   472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531

Query:   331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
             FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct:   532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 591

Query:   391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
             G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct:   592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query:   451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct:   652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query:   511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
             +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +    K+  S+EE
Sbjct:   712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKD----KEKVSKEE 767

Query:   571 IQADQEQAMAAMICRRDNKEDCI 593
                ++E+  AAM+C  +N+++C+
Sbjct:   768 --EEKERNTAAMVCSLENRDECL 788

GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=ISS

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P79732	RIR1_DANRE	1, ., 1, 7, ., 4, ., 1	0.7176	0.4989	0.6272	yes	N/A
Q8SR37	RIR1_ENCCU	1, ., 1, 7, ., 4, ., 1	0.6033	0.4679	0.6080	yes	N/A
Q03604	RIR1_CAEEL	1, ., 1, 7, ., 4, ., 1	0.7107	0.4799	0.6078	yes	N/A
P48591	RIR1_DROME	1, ., 1, 7, ., 4, ., 1	0.6996	0.5030	0.6182	yes	N/A
P07742	RIR1_MOUSE	1, ., 1, 7, ., 4, ., 1	0.7117	0.4969	0.6262	yes	N/A
P21524	RIR1_YEAST	1, ., 1, 7, ., 4, ., 1	0.6509	0.4629	0.5202	yes	N/A
P36602	RIR1_SCHPO	1, ., 1, 7, ., 4, ., 1	0.6791	0.4749	0.5844	yes	N/A
O61065	RIR1_CRYPV	1, ., 1, 7, ., 4, ., 1	0.6062	0.5080	0.6313	yes	N/A
Q9SJ20	RIR1_ARATH	1, ., 1, 7, ., 4, ., 1	0.6259	0.5020	0.6139	yes	N/A
Q54Q71	RIR1_DICDI	1, ., 1, 7, ., 4, ., 1	0.6369	0.4629	0.5310	yes	N/A
Q5R919	RIR1_PONAB	1, ., 1, 7, ., 4, ., 1	0.7097	0.4969	0.6262	yes	N/A
P23921	RIR1_HUMAN	1, ., 1, 7, ., 4, ., 1	0.7117	0.4969	0.6262	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.17.4.1	0.824
3rd Layer	1.17.4	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	998
PLN02437	813	PLN02437, PLN02437, ribonucleoside--diphosphate re	0.0
pfam02867	516	pfam02867, Ribonuc_red_lgC, Ribonucleotide reducta	0.0
TIGR02506	617	TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate r	0.0
cd01679	460	cd01679, RNR_I, Class I ribonucleotide reductase	1e-174
PRK07207	965	PRK07207, PRK07207, ribonucleotide-diphosphate red	1e-142
COG0209	651	COG0209, NrdA, Ribonucleotide reductase, alpha sub	1e-137
PLN02437	813	PLN02437, PLN02437, ribonucleoside--diphosphate re	1e-123
PRK12365	1046	PRK12365, PRK12365, ribonucleotide-diphosphate red	1e-109
PRK06539	822	PRK06539, PRK06539, ribonucleotide-diphosphate red	1e-94
PRK09102	601	PRK09102, PRK09102, ribonucleotide-diphosphate red	2e-86
PRK08447	789	PRK08447, PRK08447, ribonucleotide-diphosphate red	2e-82
PRK09209	761	PRK09209, PRK09209, ribonucleotide-diphosphate red	5e-71
pfam02867	516	pfam02867, Ribonuc_red_lgC, Ribonucleotide reducta	1e-70
PRK12364	842	PRK12364, PRK12364, ribonucleotide-diphosphate red	9e-67
TIGR02504	589	TIGR02504, NrdJ_Z, ribonucleoside-diphosphate redu	5e-61
PRK07088	764	PRK07088, PRK07088, ribonucleotide-diphosphate red	2e-60
TIGR02506	617	TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate r	1e-56
cd01679	460	cd01679, RNR_I, Class I ribonucleotide reductase	1e-53
cd02888	464	cd02888, RNR_II_dimer, Class II ribonucleotide red	8e-51
PRK07207	965	PRK07207, PRK07207, ribonucleotide-diphosphate red	3e-48
PHA02572	753	PHA02572, nrdA, ribonucleoside-diphosphate reducta	2e-46
PLN02437	813	PLN02437, PLN02437, ribonucleoside--diphosphate re	1e-45
TIGR02510	548	TIGR02510, NrdE-prime, ribonucleoside-diphosphate	4e-43
PLN02437	813	PLN02437, PLN02437, ribonucleoside--diphosphate re	3e-41
pfam02867	516	pfam02867, Ribonuc_red_lgC, Ribonucleotide reducta	1e-40
PRK09103	758	PRK09103, PRK09103, ribonucleotide-diphosphate red	3e-38
COG0209	651	COG0209, NrdA, Ribonucleotide reductase, alpha sub	4e-37
PRK06406	771	PRK06406, PRK06406, ribonucleotide-diphosphate red	2e-36
PRK12365	1046	PRK12365, PRK12365, ribonucleotide-diphosphate red	1e-35
PRK08665	752	PRK08665, PRK08665, ribonucleotide-diphosphate red	3e-35
PRK09102	601	PRK09102, PRK09102, ribonucleotide-diphosphate red	1e-34
PRK07632	699	PRK07632, PRK07632, ribonucleotide-diphosphate red	7e-33
TIGR04170	698	TIGR04170, RNR_1b_NrdE, ribonucleoside-diphosphate	8e-33
PRK06948	595	PRK06948, PRK06948, ribonucleotide reductase-like	3e-31
PRK06539	822	PRK06539, PRK06539, ribonucleotide-diphosphate red	5e-31
TIGR02506	617	TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate r	2e-29
PRK08332	1740	PRK08332, PRK08332, ribonucleotide-diphosphate red	6e-28
PRK08115	858	PRK08115, PRK08115, ribonucleotide-diphosphate red	3e-27
PRK08447	789	PRK08447, PRK08447, ribonucleotide-diphosphate red	5e-27
cd01679	460	cd01679, RNR_I, Class I ribonucleotide reductase	6e-26
PRK07187	721	PRK07187, PRK07187, ribonucleotide-diphosphate red	3e-24
pfam02867	516	pfam02867, Ribonuc_red_lgC, Ribonucleotide reducta	1e-22
PRK06556	953	PRK06556, PRK06556, vitamin B12-dependent ribonucl	5e-22
TIGR02510	548	TIGR02510, NrdE-prime, ribonucleoside-diphosphate	1e-21
PRK07207	965	PRK07207, PRK07207, ribonucleotide-diphosphate red	2e-21
COG0209	651	COG0209, NrdA, Ribonucleotide reductase, alpha sub	4e-21
PRK07306	720	PRK07306, PRK07306, ribonucleotide-diphosphate red	4e-20
TIGR02506	617	TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate r	5e-20
PRK12365	1046	PRK12365, PRK12365, ribonucleotide-diphosphate red	6e-20
PRK08188	714	PRK08188, PRK08188, ribonucleotide-diphosphate red	2e-19
PLN02437	813	PLN02437, PLN02437, ribonucleoside--diphosphate re	4e-17
PRK09209	761	PRK09209, PRK09209, ribonucleotide-diphosphate red	4e-17
PLN02437	813	PLN02437, PLN02437, ribonucleoside--diphosphate re	3e-16
COG0209	651	COG0209, NrdA, Ribonucleotide reductase, alpha sub	3e-16
PRK07088	764	PRK07088, PRK07088, ribonucleotide-diphosphate red	4e-15
cd01679	460	cd01679, RNR_I, Class I ribonucleotide reductase	4e-14
PRK08447	789	PRK08447, PRK08447, ribonucleotide-diphosphate red	2e-13
TIGR02504	589	TIGR02504, NrdJ_Z, ribonucleoside-diphosphate redu	2e-13
PRK12364	842	PRK12364, PRK12364, ribonucleotide-diphosphate red	3e-13
PRK09209	761	PRK09209, PRK09209, ribonucleotide-diphosphate red	4e-13
PRK06539	822	PRK06539, PRK06539, ribonucleotide-diphosphate red	3e-12
pfam02867	516	pfam02867, Ribonuc_red_lgC, Ribonucleotide reducta	1e-11
PRK09102	601	PRK09102, PRK09102, ribonucleotide-diphosphate red	1e-11
cd01679	460	cd01679, RNR_I, Class I ribonucleotide reductase	2e-11
PRK07088	764	PRK07088, PRK07088, ribonucleotide-diphosphate red	2e-11
PRK08332	1740	PRK08332, PRK08332, ribonucleotide-diphosphate red	2e-11
PRK12364	842	PRK12364, PRK12364, ribonucleotide-diphosphate red	6e-11
PHA02572	753	PHA02572, nrdA, ribonucleoside-diphosphate reducta	6e-10
cd02888	464	cd02888, RNR_II_dimer, Class II ribonucleotide red	7e-09
PRK07562	1220	PRK07562, PRK07562, ribonucleotide-diphosphate red	5e-08
PHA02572	753	PHA02572, nrdA, ribonucleoside-diphosphate reducta	6e-08
PRK09103	758	PRK09103, PRK09103, ribonucleotide-diphosphate red	6e-08
PRK06539	822	PRK06539, PRK06539, ribonucleotide-diphosphate red	8e-08
TIGR02504	589	TIGR02504, NrdJ_Z, ribonucleoside-diphosphate redu	1e-07
PRK07207	965	PRK07207, PRK07207, ribonucleotide-diphosphate red	4e-07
PRK06948	595	PRK06948, PRK06948, ribonucleotide reductase-like	1e-06
TIGR04170	698	TIGR04170, RNR_1b_NrdE, ribonucleoside-diphosphate	2e-06
PRK09103	758	PRK09103, PRK09103, ribonucleotide-diphosphate red	4e-06
PRK06406	771	PRK06406, PRK06406, ribonucleotide-diphosphate red	5e-06
TIGR04170	698	TIGR04170, RNR_1b_NrdE, ribonucleoside-diphosphate	6e-06
PRK07632	699	PRK07632, PRK07632, ribonucleotide-diphosphate red	1e-05
PRK06948	595	PRK06948, PRK06948, ribonucleotide reductase-like	2e-05
PRK07306	720	PRK07306, PRK07306, ribonucleotide-diphosphate red	4e-05
TIGR02506	617	TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate r	9e-05
PRK08447	789	PRK08447, PRK08447, ribonucleotide-diphosphate red	3e-04
PRK08665	752	PRK08665, PRK08665, ribonucleotide-diphosphate red	4e-04
PRK08188	714	PRK08188, PRK08188, ribonucleotide-diphosphate red	4e-04
PRK09102	601	PRK09102, PRK09102, ribonucleotide-diphosphate red	6e-04
COG0209	651	COG0209, NrdA, Ribonucleotide reductase, alpha sub	0.001
PRK07632	699	PRK07632, PRK07632, ribonucleotide-diphosphate red	0.002
cd00576	401	cd00576, RNR_PFL, Ribonucleotide reductase and Pyr	0.002
PRK09209	761	PRK09209, PRK09209, ribonucleotide-diphosphate red	0.003
PRK08665	752	PRK08665, PRK08665, ribonucleotide-diphosphate red	0.003
PRK08115	858	PRK08115, PRK08115, ribonucleotide-diphosphate red	0.004
PRK07187	721	PRK07187, PRK07187, ribonucleotide-diphosphate red	0.004

>gnl|CDD|178056 PLN02437, PLN02437, ribonucleoside--diphosphate reductase large subunit

 Score =  914 bits (2365), Expect = 0.0
 Identities = 334/521 (64%), Positives = 407/521 (78%), Gaps = 22/521 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LWIPD FM RV+S+  WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWIPDLFMERVQSNGDWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE+F+ LY KYE EGK  + V A++LWFAIL+SQIETGTPYML+KD+CN
Sbjct: 353 PNEAPGLADCWGEEFERLYTKYEREGKAKKVVQAQQLWFAILESQIETGTPYMLFKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAL---------NMYINPAD---- 257
           RKSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL          +  +P+     
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLESHPSKLVGS 472

Query: 258 -----KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
                + ++F KL +V  +VT+NLNKIIDVN+YPVE AR SNMRHRPIGIGVQGLAD FI
Sbjct: 473 LGSKNRYFDFEKLAEVTAVVTRNLNKIIDVNYYPVETARRSNMRHRPIGIGVQGLADAFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK IFETIYY AL+AS E+AAR+GPY+TY GSPVS+GILQ DMWGV
Sbjct: 533 LLGMPFDSPEAQQLNKDIFETIYYHALKASSELAAREGPYETYAGSPVSKGILQPDMWGV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           TP+  WDWAAL+E I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 TPSGRWDWAALREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+GLW   +K+++I  NGS+Q I  IP  LK +YKTVWEI Q+T++D
Sbjct: 653 FVVVNKHLLHDLTEMGLWTPTLKNKIIAENGSVQKIPEIPDDLKAIYKTVWEIKQRTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MAADRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAADRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCI 593
              +  +     A  +E+++      MA M+C  DN+E+C+
Sbjct: 773 TASLKPSATGVAAPEEEDVETK----MAQMVCSLDNREECL 809

Length = 813

>gnl|CDD|217257 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel domain

 Score =  681 bits (1760), Expect = 0.0
 Identities = 226/449 (50%), Positives = 302/449 (67%), Gaps = 11/449 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FL+LKKN G EE RAR+L  G+W+PD FM+RVE+D  W+L  
Sbjct: 78  RRGAVAVYLEVWHPDIEEFLDLKKNNGDEERRARNLNLGVWVPDLFMKRVENDEDWTLFS 137

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL D +GE+F++ Y+K EA GK  + V AR+LWF I++S  ETG PY+L+KDA N
Sbjct: 138 PREAPGLEDLYGEEFEEEYEKLEANGKVKKTVKARELWFKIVESAWETGEPYILFKDAVN 197

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           R + Q++LGTIK SNLCTEIV+ TS  E AVCNLASI L  ++   D T++F +L++V +
Sbjct: 198 RHNPQKHLGTIKSSNLCTEIVQPTSPGEDAVCNLASINLAKFVEN-DFTFDFEELREVVR 256

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +  + L+ +ID+N YPV EAR SN RHR IG+GV GLAD   ++ +P+D  E+R L  +I
Sbjct: 257 LAVRALDNVIDLNDYPVPEARKSNKRHRSIGLGVMGLADALAKLGIPYDSEEARELADEI 316

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY AL+AS E+A   GP+  +EGS  ++G               DW  L+E I KH
Sbjct: 317 FETIYYYALKASNELAKEKGPFPGFEGSKYAKG------EFHAIPLREDWEELREDIKKH 370

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNS L A  PT S +QI G  E  EP  SN+YSRR  SGEF VVN +LLRDL E  LW
Sbjct: 371 GLRNSQLTAIAPTGSISQIAGTTEGIEPIFSNVYSRRSKSGEFLVVNPYLLRDLRE--LW 428

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK++ +  NGS+Q I  IP+++K LYKT ++I  K  +DMAA R  F+DQS S  ++
Sbjct: 429 SEEMKNE-LAYNGSVQPIPEIPEEIKALYKTAFDIDPKGHIDMAAARQPFVDQSISKTLF 487

Query: 511 M-AEINYAKMSSMHFHGWKLGLKTGMYYL 538
           +  +   + + S++ + WKLGLKTG YY 
Sbjct: 488 LPEDATASDLKSLYLYAWKLGLKTGTYYR 516

Length = 516

>gnl|CDD|233902 TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate reductase, alpha subunit

 Score =  545 bits (1406), Expect = 0.0
 Identities = 212/466 (45%), Positives = 296/466 (63%), Gaps = 18/466 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA A+YLE WH DI +FL+LKKN G E  R  +LFYGLWIPD FM+RVE D  W L  
Sbjct: 155 RPGAAAVYLEVWHPDIEEFLDLKKNNGDERRRCDNLFYGLWIPDLFMKRVEEDKDWYLFS 214

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAE---GKFIRQVPARKLWFAILDSQIETGTPYMLYKD 207
           P    GL   +GE+F++ Y++ E +    K IR+V AR L   IL +++ETG PY+L+KD
Sbjct: 215 PYDVPGLYGLYGEEFEEEYERLEKDVEARKKIRKVSARDLMKDILRTRVETGRPYILFKD 274

Query: 208 ACNRK-SNQQNLGTIKCSNLCTEIVEYTSKD---EVAVCNLASIALNMYINPADKTYNFT 263
           A N+    +   G IK SNLCTEI + T      E AVCNLAS+ L  ++   +  ++F+
Sbjct: 275 AVNKHNPFKTGGGAIKMSNLCTEITQPTDDSHKGETAVCNLASVNLANFVM--EDKFDFS 332

Query: 264 KLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNES 323
           +L+D  +I  + L+ +ID+  YP   A  SN R R IGIGV GL D+  ++ LP+D  E+
Sbjct: 333 ELEDAVRIAVRFLDNVIDLQNYPTAPAAKSNQRRRSIGIGVMGLHDVLAKLGLPYDSEEA 392

Query: 324 RLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLW----- 378
           R LN +IFE IYY A++AS E+A   GP+  + GS  ++G L  D W  T          
Sbjct: 393 RDLNDRIFEAIYYYAIKASAELAKEKGPFPGFSGSKYAKGWLHPDTWEKTIDPKTSMAPT 452

Query: 379 --DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVV 436
             DW AL+E+I ++G+RNS L A MPTAS++Q+ G  ES EP  SNI++++ LSGEF + 
Sbjct: 453 EEDWEALRERIKEYGLRNSQLTALMPTASSSQLTGVTESIEPVFSNIFTKKTLSGEFLIP 512

Query: 437 NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAAD 496
           N +L+++L ELGLWD + +  ++ N GS Q I  IP+ LK  YKT +E+ Q+ ++DMAAD
Sbjct: 513 NKYLMKELEELGLWDADRRGDIVENVGSPQPIAAIPETLKYKYKTAYELDQEALIDMAAD 572

Query: 497 RGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTK 541
           R  F+DQS SLN+++ E +    +  +    WK GLKT MYY R++
Sbjct: 573 RQKFVDQSISLNLFLTEEVTAKDLLKLLLLAWKKGLKT-MYYCRSR 617

This model represents the alpha (large) chain of the class I ribonucleotide reductase (RNR). RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Class I RNR's generate the required radical (on tyrosine) via a "non-heme" iron cofactor which resides in the beta (small) subunit. The alpha subunit contains the catalytic and allosteric regulatory sites. The mechanism of this enzyme requires molecular oxygen. E. Coli contains two versions of this enzyme which are regulated independently (NrdAB and NrdEF, where NrdA and NrdE are the large chains ). Most organisms contain only one, but the application of the gene symbols NrdA and NrdE are somewhat arbitrary. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]. Length = 617

>gnl|CDD|153088 cd01679, RNR_I, Class I ribonucleotide reductase

 Score =  514 bits (1326), Expect = e-174
 Identities = 198/456 (43%), Positives = 247/456 (54%), Gaps = 126/456 (27%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FL+LKKN G E  RARDLFYG+WIPD FM RVE         
Sbjct: 125 RKGAGAVYLEIWHPDIEEFLDLKKNNGDERRRARDLFYGVWIPDLFMERVE--------- 175

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
                                             R LW  IL+SQ ETG PY+L+KD CN
Sbjct: 176 ----------------------------------RDLWRKILESQFETGYPYILFKDTCN 201

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSK-----DEVAVCNLASIALNMYINPADKTYNFTKL 265
           RK+ Q++LGTIK SNLCTEI++ TS       E AVCNLASI L  ++        F KL
Sbjct: 202 RKNPQKHLGTIKSSNLCTEILQPTSPSEDEPGEDAVCNLASINLGNFVT-------FEKL 254

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           ++V K+  + L+ +ID+N+YPV EA+ SNMRHR IG+GV GL D    +R+P++  E+  
Sbjct: 255 EEVVKLAVRALDNVIDLNYYPVPEAKRSNMRHRAIGLGVMGLHDYLALLRIPYESEEALD 314

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKE 385
           LN +IFETI Y AL+ASCE+A   G                                   
Sbjct: 315 LNDRIFETINYYALKASCELAKERG----------------------------------- 339

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
                G+RNSLL+A  PTAS +QILG   S EP TSNIY RRVLSGEF VVN HL +DL 
Sbjct: 340 -----GLRNSLLLAIAPTASISQILGATPSIEPITSNIYVRRVLSGEFPVVNPHLEKDLW 394

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
           E G                             LYKT +EI Q+ ++D+AADR   IDQ Q
Sbjct: 395 EYG-----------------------------LYKTAYEIDQRWLIDLAADRQKHIDQGQ 425

Query: 506 SLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRT 540
           SLN+++        ++S++F+ WK GLKT  YYLRT
Sbjct: 426 SLNLFLTPPATTRDLNSLYFYAWKKGLKTL-YYLRT 460

Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (which is found in prokaryotes only). It is a tetrameric enzyme of two alpha and two beta subunits; this model covers the major part of the alpha or large subunit, called R1 in class Ia and R1E in class Ib. Length = 460

>gnl|CDD|235966 PRK07207, PRK07207, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  450 bits (1160), Expect = e-142
 Identities = 208/519 (40%), Positives = 296/519 (57%), Gaps = 21/519 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 447 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEDGEWTLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F++ Y  YEA     E K  +++PA  LW  +L    ETG P++ +
Sbjct: 507 PSEVPDLHDLFGKAFEEAYTAYEAKAARGEIKLFKKIPAVDLWRKMLSMLFETGHPWITF 566

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   TS DE+AVCNL S+ L  +I       +  KL
Sbjct: 567 KDPCNLRSPQQHVGVVHSSNLCTEITLNTSDDEIAVCNLGSVNLVAHIKD-GAKLDHEKL 625

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K       + L+ +ID+N+Y V +ARNSN+RHRP+G+G+ G  D    +R+P+  +E+  
Sbjct: 626 KRTVSTAMRMLDNVIDINYYAVPKARNSNLRHRPVGLGIMGFQDALYLLRIPYASDEAVE 685

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYD-----------MWGVTP 374
              +  E + Y A+ AS E+A   G Y +YEGS  S+GIL  D              V  
Sbjct: 686 FADRSMEAVSYYAIWASTELAEERGRYSSYEGSLWSRGILPIDSLKLLAEARGGYLEVDR 745

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           +   DW AL+ +I KHG+RNS  +A  PTA+ + I+G ++S EP   N+Y +  LSGEF 
Sbjct: 746 SSTLDWDALRARIKKHGMRNSNCMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFT 805

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN +L+RDL   GLWD+ M + L   +GS+Q I+ IP  LK LY T +E+  + +++ A
Sbjct: 806 VVNPYLVRDLKARGLWDEVMVNDLKYFDGSLQRIDRIPADLKALYATAFEVDPRWLVEAA 865

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           + R  +IDQ+QSLN+YMA  +  K+   +   W  GLKT  YYLRT  A +  + T++  
Sbjct: 866 SRRQKWIDQAQSLNLYMAGASGKKLDETYKLAWLRGLKT-TYYLRTLGATHVEKSTVNTG 924

Query: 555 KMANAMAS-KDARSQEEIQADQEQAMAAMICRRDNKEDC 592
            + NA++S           A    A     C  D+  DC
Sbjct: 925 AL-NAVSSGGGGAGGAAAAAAAPPAADPKACSIDDP-DC 961

Length = 965

>gnl|CDD|223287 COG0209, NrdA, Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]

 Score =  425 bits (1094), Expect = e-137
 Identities = 160/471 (33%), Positives = 233/471 (49%), Gaps = 48/471 (10%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YL+ WH DI +FL+ K+N G E  RA D+  G+WIPD FM+R +    W+L  
Sbjct: 215 RRGAQAVYLDIWHPDIEEFLDAKRNNGDEILRAFDISVGVWIPDLFMKRAKEGEDWTLFS 274

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P       D +G +F++  +     G   +++ AR+L+  + ++  ETG PY+++ D  N
Sbjct: 275 PRDGYEAPDVYGAEFEEYAEYEADPGIRKKRIKARELFDKLAEAAFETGDPYLIFVDTLN 334

Query: 211 RKSNQ-QNLGTIKCSNLCTEIVEYTSKD-------EVAVCNLASIALNMYINPADKTYNF 262
           R++   +  G I+ SNLC+EI++ T          E A CNL SI L  ++   D     
Sbjct: 335 RRNPNAEGGGAIRASNLCSEILQRTKPLSLEQPLGEDASCNLGSINLAKFVKYGD----- 389

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
             L ++  +  + L+ +ID+N YPV EA  +N   R IG+GV GLADL  Q+ +P+   E
Sbjct: 390 -GLAELVAVAVRALDNVIDLNPYPVPEAERANAESRAIGLGVMGLADLLAQLGIPYGSEE 448

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAA 382
           +   N ++FE I Y AL+AS E+A   GPY  +EGS  ++GIL  D   +      DW  
Sbjct: 449 ALKFNDRLFEYIAYYALKASAELAKERGPYPYFEGSRWARGILPIDYPRLFGIT-EDWEK 507

Query: 383 LKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLR 442
           L+E I KHG+RNS L A  PT S + I G     EP  + +Y R    G F  V   L  
Sbjct: 508 LREDIKKHGLRNSYLTAIAPTGSISYIAGTTSGIEPIFALVYFRETKGGRFYYVVPPLFE 567

Query: 443 DLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFID 502
           DL+                                     +EI     +DM A    +ID
Sbjct: 568 DLLAYYGL-------------------------------AYEIDPLWHIDMQAAAQRWID 596

Query: 503 QSQSLNIYMAEINYAK-MSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           Q  S  + +      K ++  + + WKLGLKT  YY RT  AA  +   +D
Sbjct: 597 QGISKTLNLPNTATTKDLNKAYLYAWKLGLKT-TYYRRTSQAAQVLTVVLD 646

Length = 651

>gnl|CDD|178056 PLN02437, PLN02437, ribonucleoside--diphosphate reductase large subunit

 Score =  394 bits (1013), Expect = e-123
 Identities = 140/230 (60%), Positives = 176/230 (76%), Gaps = 4/230 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            + DMWGVTP+  WDWAAL+E I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 585 LQPDMWGVTPSGRWDWAALREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 644

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEF VVN HLL DL E+GLW   +K+++I  NGS+Q I  IP  LK +YKTVWE
Sbjct: 645 SRRVLSGEFVVVNKHLLHDLTEMGLWTPTLKNKIIAENGSVQKIPEIPDDLKAIYKTVWE 704

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++DMAADRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA
Sbjct: 705 IKQRTLVDMAADRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAA 764

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCLK 998
           +AI+FT+D      ++    T      + D E  MA M+C  DN+E+CL 
Sbjct: 765 DAIKFTVDTA----SLKPSATGVAAPEEEDVETKMAQMVCSLDNREECLA 810

Length = 813

>gnl|CDD|171440 PRK12365, PRK12365, ribonucleotide-diphosphate reductase subunit alpha; Provisional

 Score =  362 bits (931), Expect = e-109
 Identities = 186/496 (37%), Positives = 279/496 (56%), Gaps = 27/496 (5%)

Query: 91   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
            R GA  +YLE WH D  DFLEL+KNTG E  R  D+    WIPD F +R++    W+L  
Sbjct: 530  RKGAVCVYLEVWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLQQKGTWTLFS 589

Query: 151  PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
            P+   GL +++GE+F+ LY++YE      E +  ++V A  LW  +L    ETG P+M +
Sbjct: 590  PDDVPGLHEAYGEEFEKLYEEYERKVDTGEIRLYKKVEAEDLWRKMLSMLYETGHPWMTF 649

Query: 206  KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
            KD  N +S Q + G ++CSNLCTEI+   S+ E AVCNL SI L  +I       +  KL
Sbjct: 650  KDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVEHIVNDG--LDEEKL 707

Query: 266  KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
             +   I  + L+ +ID+NFYP +EA+ +N+ HR IG+GV G  D   ++ + +   E+  
Sbjct: 708  SETISIAIRILDNVIDINFYPTKEAKEANLAHRAIGLGVMGFQDALYKLNISYASQEAVE 767

Query: 326  LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------------VT 373
                  E I Y A+ AS  +A   G Y +Y+GS   +G L  D               + 
Sbjct: 768  FADYSSELIAYYAILASSLLAKERGTYSSYKGSKWDRGYLPIDTIELLKEYRGEANLLMD 827

Query: 374  PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
             +   DW  ++  I ++G+RNS L+A  PTA+ + I+G  +S EP   +++ +  LSGEF
Sbjct: 828  TSSRKDWEPVRSLIKEYGMRNSQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEF 887

Query: 434  QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
             + N +L+  L +LG+WD +M D L   +GS+ +IE IP  LK ++ T +EI  + +++ 
Sbjct: 888  TIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKKIFLTAFEIEPEWIIEC 947

Query: 494  AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
            A+ R  +ID  QSLN+Y+AE +  K+S+M+   WK GLKT  YYLR+  A +  +  +D 
Sbjct: 948  ASRRQKWIDMGQSLNLYLAEPDGKKLSNMYLTAWKKGLKT-TYYLRSSAATSVEKSFVDI 1006

Query: 554  TK-------MANAMAS 562
             K       M N  AS
Sbjct: 1007 NKRGIQPRWMKNKSAS 1022

Length = 1046

>gnl|CDD|180610 PRK06539, PRK06539, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  318 bits (815), Expect = 1e-94
 Identities = 168/483 (34%), Positives = 272/483 (56%), Gaps = 21/483 (4%)

Query: 93  GAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPN 152
           GA   Y+E WH D  +FL+L++N+G    R R     +WI DEFM+RV++D  W L  P 
Sbjct: 302 GALCFYMENWHMDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDEDWYLFDPL 361

Query: 153 TCRGLSDSWGEKFDDLYKKY--EAEG---KFIRQVPARKLWFAILDSQIETGTPYMLYKD 207
               L++ +G+ F   Y +Y  +AE    +  +++ AR+ + AIL S   T  P++ +KD
Sbjct: 362 ETPDLNELYGKAFSKRYAQYVEQAEAGRIRMFKRITAREQFRAILMSLQTTSHPWLTWKD 421

Query: 208 ACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKD 267
             N ++   N GTI  SNLCTEI     +D V+VCNLASI L+ ++  AD   ++ +L++
Sbjct: 422 TINNRALNNNTGTIHLSNLCTEICLPQDRDNVSVCNLASINLSRHL--ADGELDWAQLEE 479

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
             ++  + L+ +ID+    V+EA  SN ++R IG+GV G  D+  ++   ++  E+  L 
Sbjct: 480 STRLAVRQLDNLIDITASSVKEADFSNQQNRAIGLGVMGFTDMVERLGYSYESEEAYDLI 539

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD----------- 376
            +I E I Y A++ S ++AA  G Y  +EGS  S+G++  D   +   D           
Sbjct: 540 DRIMEHISYAAIDESADLAAERGAYPNFEGSRWSRGMVPVDSIALLEADRGVPVDVNRTT 599

Query: 377 LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVV 436
             DW AL+ K+ + G+RN+ L+A  PTAS   + G     +P  S I+SR   SG+F  V
Sbjct: 600 RLDWDALRAKV-RGGMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGKFLEV 658

Query: 437 NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAAD 496
           N +L+ DL ELGLW + ++++++ + G IQ+I  IP ++K LY+T +++     L++AA 
Sbjct: 659 NRNLVADLKELGLW-ETVREEILRSQGDIQEIAAIPDEIKALYRTSFQLSPYAFLEVAAR 717

Query: 497 RGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
              ++DQ+ S N+Y+   +   M  ++   W++G+KT  YYL  KP   A Q T+   K 
Sbjct: 718 AQKWVDQAISRNMYLESRDIGDMMDIYTAAWEMGVKT-TYYLHMKPRHTAEQSTVKVNKS 776

Query: 557 ANA 559
           A  
Sbjct: 777 AER 779

Length = 822

>gnl|CDD|236378 PRK09102, PRK09102, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  289 bits (743), Expect = 2e-86
 Identities = 159/497 (31%), Positives = 248/497 (49%), Gaps = 70/497 (14%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YL+  H +I +FL+++K TG    +A +L +G+ + DEFM  VE   +W L+ 
Sbjct: 163 RRGSFAVYLDIEHPEIEEFLDIRKPTGDPNRKALNLHHGVCVTDEFMEAVEDGDEWDLIS 222

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P                           IR V AR LW  IL+++IETG PY+L+ D  N
Sbjct: 223 PKD----------------------KSVIRTVKARDLWAKILETRIETGEPYLLFIDNVN 260

Query: 211 RK--SNQQNLG-TIKCSNLCTEI-----VEYTSKDEVAVCNLASIALNMYINPADKTYNF 262
           R      ++LG  +K SNLC+EI     +++  +D  AVC L+S+ L  Y    D     
Sbjct: 261 RALPEVYKDLGLKVKASNLCSEITLPTGIDHLGEDRTAVCCLSSLNLEYYDEWKD---TD 317

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
             ++D+ + +   L   ID     +E A+ S MR R +G+GV G         +PF+   
Sbjct: 318 AFIEDLMRFLDNVLQDFIDKAPDEMERAKYSAMRERSVGLGVMGFHSYLQSKMIPFESVM 377

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAA 382
           ++  NK+IF+ I   A +AS E+A   G                         D      
Sbjct: 378 AKQWNKKIFKHIREQADKASKELAKEKGE----------------------CPDA----- 410

Query: 383 LKEKIAKHGV--RNSLLIAPMPTASTAQILGN-NESFEPYTSNIYSRRVLSGEFQVVNHH 439
                A +GV  R S  +A  PTAS + ILGN +   EP  +N Y+ + L G F V N +
Sbjct: 411 -----AGYGVMRRFSTKMAIAPTASISIILGNTSPGIEPIAANYYTHKTLKGSFTVKNKY 465

Query: 440 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 499
           L + L E G   D +   ++ N GS+Q ++ + ++ KD++KT +EI Q+ ++++AADR  
Sbjct: 466 LEKLLEEKGKDTDEVWSSILTNEGSVQHLDFLSEEEKDVFKTAFEIDQRWIIELAADRQK 525

Query: 500 FIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 558
           +IDQ+QSLN+++ A +    ++ +HF  WK G+K+ +YY R+K    A + + D  K   
Sbjct: 526 YIDQAQSLNLFLPANVPKRDLNKLHFEAWKKGVKS-LYYQRSKSVQRADKVSHDVLKKRL 584

Query: 559 AMASKDARSQEEIQADQ 575
              S   R  +E  A Q
Sbjct: 585 VEKSAFNRDYDECLACQ 601

Length = 601

>gnl|CDD|236266 PRK08447, PRK08447, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  283 bits (726), Expect = 2e-82
 Identities = 171/539 (31%), Positives = 259/539 (48%), Gaps = 120/539 (22%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLEPWH DI DF++L+KN+G+E  RA DLF  LWI D FM+RVE DA W+L  
Sbjct: 289 RKGAIAVYLEPWHMDISDFIDLRKNSGEERRRAHDLFPALWINDLFMKRVEEDAMWTLFD 348

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIR-QVPARKLWFAILDSQIETGTPYMLYKDAC 209
           P  C+ L++ +GE+F+  Y +YE + K I+  + A++LW  IL +  ETG P++ +KD  
Sbjct: 349 PYECKDLTELYGEEFEKRYLEYEKDEKIIKEYINAKELWKKILTNYFETGLPFLCFKDNA 408

Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTS--------------------KDEVAV-------- 241
           NR +   + G I+ SNLCTEI + T+                    ++ V V        
Sbjct: 409 NRANPNAHAGIIRSSNLCTEIFQNTAPNHYKIKIEFEDGSIEFFEEEELVTVDSGITKKA 468

Query: 242 ----------------------------CNLASIALNMYINPADKTYNFTKLKDVAKIVT 273
                                       CNLASI L+       K      ++ V  I  
Sbjct: 469 KKITSLDSLKGKKIYIVEKEKKDGKTAVCNLASINLS-------KINTKEDIERVVPIAI 521

Query: 274 KNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFET 333
           + L+ +ID+NFYP  + + +N++ R IG+GV G A +  + ++ +   E      +I E 
Sbjct: 522 RMLDNVIDLNFYPNRKVKATNLKSRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDEIMEQ 581

Query: 334 IYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------VTPTDLW----DWAAL 383
           I Y A++AS  +A   G Y  +EGS  S+GI   D         V    L+    DW  L
Sbjct: 582 ISYNAIDASSNLALEKGVYPDFEGSNWSKGIFPIDKANEEAKKLVERGGLFDSACDWEGL 641

Query: 384 KEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV----LSGEFQVVNHH 439
           +EK+ K G+RN  L+A  PT+S + ++G  ++ EP    +Y R+     LSG   VV  +
Sbjct: 642 REKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEP----VYKRKWFEENLSGLIPVVVPN 697

Query: 440 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 499
           L  +      W                            Y   +++ QK ++  AA R  
Sbjct: 698 LSPE-----TW--------------------------QYYTPAYDLDQKDLIKAAAVRQK 726

Query: 500 FIDQSQSLNIYM----AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           +IDQ QSLNI++    A   Y  ++ ++   WKLGLK+  YYLR++   +      D++
Sbjct: 727 WIDQGQSLNIFLSLDKASGKY--LNEIYTLAWKLGLKS-TYYLRSESPESEEVSVADRS 782

Length = 789

>gnl|CDD|181700 PRK09209, PRK09209, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  251 bits (642), Expect = 5e-71
 Identities = 150/482 (31%), Positives = 221/482 (45%), Gaps = 75/482 (15%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YL+ WH DI  FL+L+ N G E  RA D+F G+ IPD FM  VE    W L  
Sbjct: 310 RKGAIAVYLDVWHKDIESFLDLRLNNGDERLRAHDVFTGVCIPDLFMEAVERRGDWYLFD 369

Query: 151 PNTCR-----GLSDSWGEKFDDLY--KKYE---AEGKFIRQ-VPARKLWFAILDSQIETG 199
           P+  +      L D + EK  D    +KYE   A+ +  R+ V A  +   I+ SQ+ETG
Sbjct: 370 PHEVKKVMGWYLEDFYDEKKGDGSFREKYEECVADERLSRKTVKAIDIMKRIMVSQLETG 429

Query: 200 TPYMLYKDACNRKSNQQNLGTIKCSNLCTEIV----------EYTSKDEV---------A 240
            P+M Y+D  NR +  ++ G I  SNLCTEI+          E  S  ++          
Sbjct: 430 NPFMFYRDEVNRMNPNKHEGMIYSSNLCTEIMQNMSPTVMIQEIISGGQIVITKQPGDFV 489

Query: 241 VCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPI 300
           VCNL+SI L   +  AD       L+ +  I  + L+ +ID+N  PV +A  +N ++R I
Sbjct: 490 VCNLSSINLGRAV-TAD------VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAI 542

Query: 301 GIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 360
           G+G  G   L     + ++  E+     +++E I Y  ++AS E+A   G Y  ++GS  
Sbjct: 543 GLGTFGWHHLLALKGIAWESEEAVQYADELYERINYLTIQASMELAKEKGAYPVFKGSDW 602

Query: 361 SQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYT 420
             G   ++  G        W  L  ++A++GVRN+ L+A  P  STAQI G+  S +P  
Sbjct: 603 QTGEY-FERRGYNSP---QWDELAAQVAENGVRNAYLMAVAPNMSTAQIAGSTASIDPIY 658

Query: 421 SNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY- 479
           S  Y          V       DL                                  Y 
Sbjct: 659 SAFYYEEKKDYRRPVT----APDLSLDTWP---------------------------YYE 687

Query: 480 KTVWEIPQKTVLDMAADRGAFIDQSQSLNIY-MAEINYAKMSSMHFHGWKLGLKTGMYYL 538
           K  +++ Q   +   A R   +DQS S N Y  + I  +++  +H   WK GLKT  YY+
Sbjct: 688 KGAYKVDQFWSIRQNAARQRHVDQSISFNFYVPSTIRASELLDLHMTAWKEGLKT-TYYV 746

Query: 539 RT 540
           R+
Sbjct: 747 RS 748

Length = 761

>gnl|CDD|217257 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel domain

 Score =  243 bits (623), Expect = 1e-70
 Identities = 80/161 (49%), Positives = 106/161 (65%), Gaps = 4/161 (2%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L+E I KHG+RNS L A  PT S +QI G  E  EP  SN+YSRR  SGEF VVN 
Sbjct: 359 DWEELREDIKKHGLRNSQLTAIAPTGSISQIAGTTEGIEPIFSNVYSRRSKSGEFLVVNP 418

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +LLRDL E  LW + MK++ +  NGS+Q I  IP+++K LYKT ++I  K  +DMAA R 
Sbjct: 419 YLLRDLRE--LWSEEMKNE-LAYNGSVQPIPEIPEEIKALYKTAFDIDPKGHIDMAAARQ 475

Query: 903 AFIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGLKTGMYYL 942
            F+DQS S  +++  +   + + S++ + WKLGLKTG YY 
Sbjct: 476 PFVDQSISKTLFLPEDATASDLKSLYLYAWKLGLKTGTYYR 516

Length = 516

>gnl|CDD|237077 PRK12364, PRK12364, ribonucleotide-diphosphate reductase subunit alpha; Provisional

 Score =  240 bits (614), Expect = 9e-67
 Identities = 150/486 (30%), Positives = 236/486 (48%), Gaps = 79/486 (16%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESD--AQWSL 148
           R GA A+YL+ WH DI +FL+L+ N G +  +A D+F  +  PD F + V  D    W L
Sbjct: 389 RQGAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMVRDDINQSWYL 448

Query: 149 MCPN---TCRG--LSDSWGEKFDDLYKKYEAEGKFI-RQVPARKLWFAILDSQIETGTPY 202
            CP+   T +G  L D +GE+++  Y     + +   R +P + L   IL S +ETGTP+
Sbjct: 449 FCPHEILTVKGYALEDYYGEEWEKRYLDCVNDARISKRSIPIKDLVRLILKSAVETGTPF 508

Query: 203 MLYKDACNRKSNQQNLGTIKCSNLCTEI-----------------------VEYTSKDEV 239
              +D  NR +  ++ G I CSNLCTEI                       V  T   + 
Sbjct: 509 TFNRDTVNRANPNKHKGMIYCSNLCTEIAQNMSAIETVSTEIETEDGDTVVVTTTRPGDF 568

Query: 240 AVCNLASIAL-NMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHR 298
            VCNLAS++L N+ +       +  +L++V + V + L+ +ID+NFYPV  A+ +N R+R
Sbjct: 569 VVCNLASLSLGNIDLE------DEEELEEVVRTVVRALDNVIDLNFYPVPYAQITNKRYR 622

Query: 299 PIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGS 358
            IG+GV G      +  + ++  E      ++FE I Y A++AS EIA   G Y  +EGS
Sbjct: 623 SIGLGVSGYHHALAKNGIRWESEEHLEFADRVFERINYAAIKASMEIAKEKGAYGYFEGS 682

Query: 359 PVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEP 418
               G   +   G T     +W  L  ++A++G+RN+ L+A  PT+ST+ I G     +P
Sbjct: 683 DWQTGAY-FRKRGYTSE---EWQRLAREVAENGMRNAYLLAVAPTSSTSIIAGTTAGVDP 738

Query: 419 YTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSI--QDIEGIPQKLK 476
                           V+  + L +                   G++  +    +  K  
Sbjct: 739 ----------------VMKRYFLEE-----------------KKGALMPRVAPELSDKTF 765

Query: 477 DLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGM 535
            LYK    I QK  +  A  R   IDQ+QS+N+Y+  E    ++  ++   W+ G+KT +
Sbjct: 766 WLYKNAHLIDQKWSIRAAGVRQRHIDQAQSVNLYITNEFTMRQVLDLYLLAWEEGVKT-I 824

Query: 536 YYLRTK 541
           YY+R+K
Sbjct: 825 YYVRSK 830

Length = 842

>gnl|CDD|233900 TIGR02504, NrdJ_Z, ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent

 Score =  218 bits (558), Expect = 5e-61
 Identities = 138/453 (30%), Positives = 225/453 (49%), Gaps = 41/453 (9%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA    L+ WH DI +F+E KK  GK      ++  G+   D FM  VE+D ++ L  
Sbjct: 152 RRGAQMGILDVWHPDIEEFIEAKKKEGK--LTNFNISVGVT--DAFMEAVEADEEYKLRN 207

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P T        GE+ ++L +K E +    ++VPAR+LW  I+++  ++  P +L+ D  N
Sbjct: 208 PRT--------GEEIEELAEKREPKLVVYKEVPARELWDKIVEAAWKSAEPGLLFIDTIN 259

Query: 211 RKSNQQNLGTIKCSNLCTEI--VEYTSKDEVAVCNLASIAL-NMYINPA-DKTYNFTKLK 266
           + +N   LG I  +N C E   + Y S      CNL SI L     N     +++F +L+
Sbjct: 260 KWNNLPYLGRINATNPCGEQPLLPYES------CNLGSINLAKFVKNDFGGASFDFERLR 313

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           +V ++ T+ L+ +ID+N +P+ E   +  + R IG+G+ GLADL I++ +P+D  E+R  
Sbjct: 314 EVVRLATRFLDNVIDLNRFPLPEIAEATKKTRRIGLGIMGLADLLIKLGIPYDSEEARAF 373

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
            +++   I   A  AS E+A   G +  +E S       +Y M  V        A L+E 
Sbjct: 374 AEELMRFIADAAYRASAELAKERGAFPLFEAS-------KYLMGKVARIPSALPAELREA 426

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL-SGEFQVVNHHLLRDLV 445
           IAK+G+RN+ L    PT + + I G +   EP  + +Y R V   GE   VN  +   L 
Sbjct: 427 IAKYGIRNAQLTTIAPTGTISLIAGTSSGIEPVFALVYFRNVTVGGELLEVNPLVELALR 486

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
           ELG + D +    +   G+++    +P++L  ++ T  +I  +  + M A    ++D S 
Sbjct: 487 ELGYYSDEIVKIEVAEKGTVEGAPDLPEELPKVFVTANDISPEDHVLMQAAIQPWVDSSI 546

Query: 506 SLNIYM------AEINYAKMSSMHFHGWKLGLK 532
           S  I M       ++        +   WKLGLK
Sbjct: 547 SKTINMPSDATVEDVKAV-----YLEAWKLGLK 574

This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (Class II RNRs) related to the characterized species from Pyrococcus , Thermoplasma , Corynebacterium and Deinococcus. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]. Length = 589

>gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  220 bits (562), Expect = 2e-60
 Identities = 137/485 (28%), Positives = 219/485 (45%), Gaps = 78/485 (16%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G  AI L+ WH DI +FL+LK N G +  +A D+F G+  PD FM+R+E    WSL  
Sbjct: 312 RKGGAAITLDIWHKDIPEFLDLKTNNGDDRRKAHDIFPGVSYPDLFMKRLEKRENWSLFD 371

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFI----------RQVPARKLWFAILDSQIETGT 200
           P+  + +     E + D   + E   K++          R VP   +   I+ S +ETGT
Sbjct: 372 PHEIKKVKGYSLEDYYDEEDRKEFTKKYLECEEDTNIPRRTVPVLDIMKKIMKSAVETGT 431

Query: 201 PYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVA-------------------- 240
           P++ ++D  N+ +  ++ G I  SNLC EI +  S+ E+                     
Sbjct: 432 PFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESELLEEEIIDENGYYEVVQKIKAG 491

Query: 241 ---VCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRH 297
               CNL SI L    N  D+     +L++V     + L+ +I +N+YPV EA  ++ ++
Sbjct: 492 DMVTCNLNSIVLG---NVDDE-----ELEEVIPTQIRMLDNVISLNYYPVPEAEITSDKY 543

Query: 298 RPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEG 357
           R IG+G  G   +    ++ ++ +E      +I+E I Y A++AS E+A   G Y  ++G
Sbjct: 544 RAIGLGTSGYHHMLANNKIRWESDEHIKFADKIYEEIAYYAIKASMELAKEKGSYPAFKG 603

Query: 358 SPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFE 417
           S    G   ++  G        W  LKE+I K+G+RN  + A  PT ST+ I       +
Sbjct: 604 SEWETGKY-FERRGYNSE---RWKKLKEEIKKYGMRNGYITAVAPTGSTSNIANTTAGID 659

Query: 418 PYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKD 477
           P    ++ R  +  +          DL E   W                           
Sbjct: 660 P----VFKRFFMEEKKGSFTPKTAPDLNEENFW--------------------------- 688

Query: 478 LYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMY 536
            YK    I Q+  +     R   IDQ+QS N+Y+  E    ++ +++   WK G+KT +Y
Sbjct: 689 YYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITPEYKAKQILNLYIEAWKQGVKT-IY 747

Query: 537 YLRTK 541
           Y+R K
Sbjct: 748 YVRNK 752

Length = 764

>gnl|CDD|233902 TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate reductase, alpha subunit

 Score =  206 bits (527), Expect = 1e-56
 Identities = 81/185 (43%), Positives = 117/185 (63%), Gaps = 9/185 (4%)

Query: 769 FKYDMWGVTPTDLW-------DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFE 821
              D W  T            DW AL+E+I ++G+RNS L A MPTAS++Q+ G  ES E
Sbjct: 434 LHPDTWEKTIDPKTSMAPTEEDWEALRERIKEYGLRNSQLTALMPTASSSQLTGVTESIE 493

Query: 822 PYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKD 881
           P  SNI++++ LSGEF + N +L+++L ELGLWD + +  ++ N GS Q I  IP+ LK 
Sbjct: 494 PVFSNIFTKKTLSGEFLIPNKYLMKELEELGLWDADRRGDIVENVGSPQPIAAIPETLKY 553

Query: 882 LYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMY 940
            YKT +E+ Q+ ++DMAADR  F+DQS SLN+++ E +    +  +    WK GLKT MY
Sbjct: 554 KYKTAYELDQEALIDMAADRQKFVDQSISLNLFLTEEVTAKDLLKLLLLAWKKGLKT-MY 612

Query: 941 YLRTK 945
           Y R++
Sbjct: 613 YCRSR 617

This model represents the alpha (large) chain of the class I ribonucleotide reductase (RNR). RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Class I RNR's generate the required radical (on tyrosine) via a "non-heme" iron cofactor which resides in the beta (small) subunit. The alpha subunit contains the catalytic and allosteric regulatory sites. The mechanism of this enzyme requires molecular oxygen. E. Coli contains two versions of this enzyme which are regulated independently (NrdAB and NrdEF, where NrdA and NrdE are the large chains ). Most organisms contain only one, but the application of the gene symbols NrdA and NrdE are somewhat arbitrary. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]. Length = 617

>gnl|CDD|153088 cd01679, RNR_I, Class I ribonucleotide reductase

 Score =  193 bits (494), Expect = 1e-53
 Identities = 77/166 (46%), Positives = 97/166 (58%), Gaps = 35/166 (21%)

Query: 784 WAALKE--KIAKH--GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQV 839
           + ALK   ++AK   G+RNSLL+A  PTAS +QILG   S EP TSNIY RRVLSGEF V
Sbjct: 325 YYALKASCELAKERGGLRNSLLLAIAPTASISQILGATPSIEPITSNIYVRRVLSGEFPV 384

Query: 840 VNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA 899
           VN HL +DL E GL                             YKT +EI Q+ ++D+AA
Sbjct: 385 VNPHLEKDLWEYGL-----------------------------YKTAYEIDQRWLIDLAA 415

Query: 900 DRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRT 944
           DR   IDQ QSLN+++        ++S++F+ WK GLKT  YYLRT
Sbjct: 416 DRQKHIDQGQSLNLFLTPPATTRDLNSLYFYAWKKGLKTL-YYLRT 460

Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (which is found in prokaryotes only). It is a tetrameric enzyme of two alpha and two beta subunits; this model covers the major part of the alpha or large subunit, called R1 in class Ia and R1E in class Ib. Length = 460

>gnl|CDD|153089 cd02888, RNR_II_dimer, Class II ribonucleotide reductase, dimeric form

 Score =  185 bits (473), Expect = 8e-51
 Identities = 101/334 (30%), Positives = 154/334 (46%), Gaps = 39/334 (11%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELK-KNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLM 149
           R GA    L+  H DI +F++ K K       +  ++   +   D FM  VE+D  W L 
Sbjct: 108 RRGANMGVLDVDHPDIEEFIDAKMKEEKTVVLQNFNISVAVT--DAFMEAVENDEPWELR 165

Query: 150 CPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDAC 209
            P                        GK  R VPAR+LW  I+++  ++  P +L+ D  
Sbjct: 166 NPRE-------------------PDTGKVYRTVPARELWDKIVEAAWDSADPGVLFIDTI 206

Query: 210 NRKSNQQNLGTIKCSNLCTEIV--EYTSKDEVAVCNLASIAL-NMYINP-ADKTYNFTKL 265
           NR +    LG I  +N C E     Y S      CNL SI L     NP    +++F +L
Sbjct: 207 NRWNPLPGLGRINATNPCGEQPLLPYES------CNLGSINLSKFVKNPFGGASFDFERL 260

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           ++  ++  + L+ +IDVN YP+ E        R IG+GV GLAD+ I++ +P+D  E+R 
Sbjct: 261 REAVRLAVRFLDNVIDVNRYPLPEIAEETKATRRIGLGVMGLADMLIKLGIPYDSEEARE 320

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKE 385
           L ++I   I   A  AS E+A   GP+  ++ S       +Y M  V          + E
Sbjct: 321 LAERIMSFIRDAAYRASAELAKERGPFPLFDAS-------RYLMLKVIVNAKELPDDVLE 373

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPY 419
           +I K+G+RN+ L    PT + + I G +   EP 
Sbjct: 374 EIEKYGIRNAHLTTIAPTGTISLIAGTSSGIEPI 407

Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Many, but not all members of this class are found to be homodimers. Adenosylcobalamin interacts directly with an active site cysteine to form the reactive cysteine radical. Length = 464

>gnl|CDD|235966 PRK07207, PRK07207, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  186 bits (474), Expect = 3e-48
 Identities = 86/215 (40%), Positives = 125/215 (58%), Gaps = 4/215 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW AL+ +I KHG+RNS  +A  PTA+ + I+G ++S EP   N+Y +  LSGEF VVN 
Sbjct: 750 DWDALRARIKKHGMRNSNCMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVVNP 809

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD+ M + L   +GS+Q I+ IP  LK LY T +E+  + +++ A+ R 
Sbjct: 810 YLVRDLKARGLWDEVMVNDLKYFDGSLQRIDRIPADLKALYATAFEVDPRWLVEAASRRQ 869

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+YMA  +  K+   +   W  GLKT  YYLRT  A +  + T++   + N
Sbjct: 870 KWIDQAQSLNLYMAGASGKKLDETYKLAWLRGLKT-TYYLRTLGATHVEKSTVNTGAL-N 927

Query: 963 AMAS-KDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           A++S           A    A     C  D+  DC
Sbjct: 928 AVSSGGGGAGGAAAAAAAPPAADPKACSIDDP-DC 961

Length = 965

>gnl|CDD|222883 PHA02572, nrdA, ribonucleoside-diphosphate reductase subunit alpha; Provisional

 Score =  178 bits (453), Expect = 2e-46
 Identities = 142/496 (28%), Positives = 225/496 (45%), Gaps = 78/496 (15%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   Y   WH ++ D L LK N G EE R R L YG+ I D    R   +   +L  
Sbjct: 296 RGGAATAYYPIWHLEVEDLLVLKNNKGVEENRIRHLDYGVQINDLMYERFIKNDYITLFS 355

Query: 151 PNTCRG-LSDSWG---EKFDDLYKKYEAEGKFIRQ--VPARKLWFAILDSQIETGTPYML 204
           P+   G L D++    ++F +LY+  E +   +R+  + A++L+  +L  + ETG  Y++
Sbjct: 356 PHDVGGELYDAYFADQDRFRELYEALEKDPS-VRKKRIKAQELFLLLLKERSETGRIYIM 414

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTS-------KDEVAVCNLASIALNMYINPAD 257
           + D CN  S       I+ SNLC EI   T        + E+A+C L++I L        
Sbjct: 415 FIDHCNNHSP--FKDPIRQSNLCCEIALPTKPLNHIDGEGEIALCTLSAIVL-------G 465

Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
              +  +++++A++  + L+ ++D   YPV  A  +  R R +G+GV   A    +    
Sbjct: 466 NFEDQDEIEELAEVAVRALDNLLDYQDYPVPAALKAKKR-RSLGVGVTNYAHYLAKNFAS 524

Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------ 371
           ++   + L+++ +FE + Y  ++AS ++A   G  + +  +  S+G L  D +       
Sbjct: 525 YEDANADLVHE-LFERLQYYLIKASNKLAKEKGACEYFSDTKYSRGELPIDWYKKKVDEL 583

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEP---YTSNIYSRRV 428
           V P    DW +L+E + K+G+RNS L A MP  S++Q+  +    EP     S   S+  
Sbjct: 584 VAPKYNCDWESLREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKKSKE- 642

Query: 429 LSGEF-QVV-NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP 486
             G F QVV N   L+DL +L LWD   K     N G               Y T   I 
Sbjct: 643 --GPFNQVVPNVETLKDLYDL-LWDLAKKG----NKG---------------YLTQVAIM 680

Query: 487 QKTVLDMAADRGAFIDQSQSLNIYMAEINYAK----MSSMH---FHGWKLGLKTGMYYLR 539
           QK           F+DQ+ S N      NY      MS M     + +  G KT +YY  
Sbjct: 681 QK-----------FVDQAISANTSYDPENYPNGKVPMSVMLDDLLYFYYYGGKT-LYYHN 728

Query: 540 TKPAANAIQFTIDKTK 555
           T+       + I+  K
Sbjct: 729 TRDGKGTEDYEIETPK 744

Length = 753

>gnl|CDD|178056 PLN02437, PLN02437, ribonucleoside--diphosphate reductase large subunit

 Score =  176 bits (449), Expect = 1e-45
 Identities = 61/86 (70%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LWIPD FM RV+S+  WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWIPDLFMERVQSNGDWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WGE+F+ LY KYE EG
Sbjct: 353 PNEAPGLADCWGEEFERLYTKYEREG 378

Length = 813

>gnl|CDD|188230 TIGR02510, NrdE-prime, ribonucleoside-diphosphate reductase, alpha chain

 Score =  165 bits (419), Expect = 4e-43
 Identities = 118/395 (29%), Positives = 183/395 (46%), Gaps = 51/395 (12%)

Query: 161 WG-EKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQ--QN 217
           WG E  DD Y+K  A          R  W  ++ S+  TG PYM ++   N  + Q  +N
Sbjct: 183 WGVEVGDDWYEKMIA-----GDPEKRARWAKLMYSRARTGIPYMWFRWNANELAPQVIKN 237

Query: 218 LG-TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMY--INPADKTYNFTKLKDVAKIVTK 274
            G  I+ SNLCTEI   +   E  VC L+S+ +  Y      D      +  D   + ++
Sbjct: 238 SGIPIRASNLCTEIALPSDDMESFVCCLSSLNVLHYDEWKDTDAVETLVRFLD--SVCSE 295

Query: 275 NLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETI 334
            + K   +++  +  A     R R IG+G  G        R+PF+  E+ +LN +I++TI
Sbjct: 296 FIAKAKGLSY--MHRAVRFAERARAIGLGTLGWHSYLQSNRIPFESGEAHILNAEIYKTI 353

Query: 335 YYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRN 394
              A EAS E+A R G  +  EG+                                G RN
Sbjct: 354 KERAEEASRELAERYGEPEVCEGT--------------------------------GRRN 381

Query: 395 SLLIAPMPTASTAQILGN-NESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDN 453
           + LIA  PT S+A ILG  + S EP  SN + +    G+    N  L + L E G   + 
Sbjct: 382 ATLIAIAPTKSSAFILGQVSPSIEPLVSNYFIQDSNKGDVVRKNPVLAKVLKEKGTDQEL 441

Query: 454 MKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYM-- 511
           + D +  +NGS+Q ++ +  + K ++KT +EI Q  ++ +AA R   IDQ+QSLN+++  
Sbjct: 442 VWDIITYHNGSVQHLDFLTDEEKSVFKTFYEISQMAIIRLAAARQKHIDQAQSLNLFISP 501

Query: 512 AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 546
            E      + +    W  GLK+ +YY R++  A A
Sbjct: 502 DEKPSVDANVLRAFAWDPGLKS-LYYQRSERGAQA 535

This model represents a small clade of ribonucleoside-diphosphate reductase, alpha chains which are sufficiently divergent from the usual Class I RNR alpha chains (NrdE or NrdA, TIGR02506) as to warrant their own model. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]. Length = 548

>gnl|CDD|178056 PLN02437, PLN02437, ribonucleoside--diphosphate reductase large subunit

 Score =  162 bits (413), Expect = 3e-41
 Identities = 59/83 (71%), Positives = 70/83 (84%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD  E++ LNK IFETIYY AL+AS E+AAR+GPY+TY GSPVS
Sbjct: 522 IGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASSELAAREGPYETYAGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQ DMWGVTP+  WDWAAL+
Sbjct: 582 KGILQPDMWGVTPSGRWDWAALR 604

Length = 813

>gnl|CDD|217257 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel domain

 Score =  157 bits (399), Expect = 1e-40
 Identities = 49/89 (55%), Positives = 63/89 (70%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FL+LKKN G EE RAR+L  G+W+PD FM+RVE+D  W+L  
Sbjct: 78  RRGAVAVYLEVWHPDIEEFLDLKKNNGDEERRARNLNLGVWVPDLFMKRVENDEDWTLFS 137

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVY 89
           P    GL D +GE+F++ Y+K EA G V 
Sbjct: 138 PREAPGLEDLYGEEFEEEYEKLEANGKVK 166

Length = 516

>gnl|CDD|181649 PRK09103, PRK09103, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  153 bits (389), Expect = 3e-38
 Identities = 142/509 (27%), Positives = 224/509 (44%), Gaps = 87/509 (17%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  ++   WH ++   L LK N G EE R R + YG+ I     +R+      +L  
Sbjct: 295 RGGAATLFYPIWHLEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITLFS 354

Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIR--QVPARKLWFAILDSQIETGTPYMLY 205
           P+   GL D++    ++F+ LY KYE +   IR  +V A +L+  ++  +  TG  Y+  
Sbjct: 355 PSDVPGLYDAFFADQDEFERLYTKYEQD-DSIRKKRVKAVELFSLMMQERASTGRIYIQN 413

Query: 206 KDACNRKSN-QQNLGTIKCSNLCTEIVEYT--------SKDEVAVCNLASIALNMYINPA 256
            D CN  S     +  ++ SNLC EI   T           E+A+C L+  A N+     
Sbjct: 414 VDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS--AFNL----- 466

Query: 257 DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRL 316
               +  +L+++A +  + L+ ++D   YP+  A+   M  R +GIGV   A    +  +
Sbjct: 467 GAINSLDELEELADLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKNGV 526

Query: 317 PFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-----G 371
            +    +  L  + FE I Y  L+AS E+A   G    +  +  +QGIL  D +      
Sbjct: 527 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDLDA 586

Query: 372 VTPTDL-WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEP---YTSNIYSRR 427
           +    L +DW  L+E+I  HG+RNS L A MP+ +++QI       EP   Y S   S+ 
Sbjct: 587 ICNEPLHYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKD 646

Query: 428 -VLSGEFQVV-NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI 485
            +L    QVV ++  L+D  EL LW+  M +    N+G +Q + GI QK           
Sbjct: 647 GILK---QVVPDYERLKDAYEL-LWE--MPN----NDGYLQ-LVGIMQK----------- 684

Query: 486 PQKTVLDMAADRGAFIDQSQSLNIYMAEINY-------AKMSSMHF-----HGWKLGLKT 533
                         F+DQS S N      NY        K+            +K G+KT
Sbjct: 685 --------------FVDQSISAN-----TNYDPSRFPSGKVPMKQLLKDLLTAYKFGVKT 725

Query: 534 GMYYLRTKPAANAIQFTIDKTKMANAMAS 562
            +YY  T+  A   Q  +  +   +    
Sbjct: 726 -LYYHNTRDGAEDAQDDLQPSIQDDGCEG 753

Length = 758

>gnl|CDD|223287 COG0209, NrdA, Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]

 Score =  148 bits (376), Expect = 4e-37
 Identities = 52/176 (29%), Positives = 69/176 (39%), Gaps = 33/176 (18%)

Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
            DW  L+E I KHG+RNS L A  PT S + I G     EP  + +Y R    G F  V 
Sbjct: 503 EDWEKLREDIKKHGLRNSYLTAIAPTGSISYIAGTTSGIEPIFALVYFRETKGGRFYYVV 562

Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADR 901
             L  DL+                                     +EI     +DM A  
Sbjct: 563 PPLFEDLLAYYGL-------------------------------AYEIDPLWHIDMQAAA 591

Query: 902 GAFIDQSQSLNIYMAEINYAK-MSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 956
             +IDQ  S  + +      K ++  + + WKLGLKT  YY RT  AA  +   +D
Sbjct: 592 QRWIDQGISKTLNLPNTATTKDLNKAYLYAWKLGLKT-TYYRRTSQAAQVLTVVLD 646

Length = 651

>gnl|CDD|235796 PRK06406, PRK06406, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  148 bits (374), Expect = 2e-36
 Identities = 110/425 (25%), Positives = 197/425 (46%), Gaps = 65/425 (15%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA    L   H DI +F+  K +  K      +    + + DEF  ++++D  + L  
Sbjct: 325 RRGANMGILSYHHPDIMEFITSKDSENKV---LSNFNISVAVTDEFFDKLDNDDYYPLRN 381

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P                        GK ++++ AR++W  I+    +TG P +++ D  N
Sbjct: 382 PRN----------------------GKEVKRIKARQVWDLIITQAWKTGDPGVIFLDEIN 419

Query: 211 RKSNQQNLGTIKCSNLCTE--IVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           RK+  +NLG I+ +N C E  ++ Y S      CNL SI L+ ++   +   ++ +L++ 
Sbjct: 420 RKNPVKNLGEIESTNPCGEQPLLPYES------CNLGSINLSKFV--ENGKIDWDRLRET 471

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
             I T+ L+ +ID N +PV + +      R IG+GV G AD+ I++ +P++  E+  + +
Sbjct: 472 VHIATRFLDNVIDANKFPVPQIKEMTRMTRKIGLGVMGFADMLIKLGIPYNSEEALEIAE 531

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           ++ + I   +  AS ++A   G +  + GS                    +W   K+ I 
Sbjct: 532 KVMKFINEESHRASQKLAEERGVFPAWYGS--------------------EWE--KKGIK 569

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG-EFQVVNHHLLRDLVEL 447
              +RNS      PT + + I G + S EP  +  + R VL+G E   VN        + 
Sbjct: 570 ---MRNSTTTTIAPTGTISIIAGCSSSIEPLFAIAFVRHVLNGQELLEVNPLFEEITRKR 626

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI-PQKTVLDMAADRGAFIDQSQS 506
           GL+ + +  + +   G++Q+I+ +P+ +K ++ T  EI PQ  VL M A    + D   S
Sbjct: 627 GLYSEELMRK-VAETGNLQNID-VPEDIKRIFVTAHEIDPQWHVL-MQATFQRYCDSGVS 683

Query: 507 LNIYM 511
             I +
Sbjct: 684 KTINL 688

Length = 771

>gnl|CDD|171440 PRK12365, PRK12365, ribonucleotide-diphosphate reductase subunit alpha; Provisional

 Score =  146 bits (370), Expect = 1e-35
 Identities = 74/191 (38%), Positives = 116/191 (60%), Gaps = 8/191 (4%)

Query: 783  DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
            DW  ++  I ++G+RNS L+A  PTA+ + I+G  +S EP   +++ +  LSGEF + N 
Sbjct: 833  DWEPVRSLIKEYGMRNSQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNV 892

Query: 843  HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
            +L+  L +LG+WD +M D L   +GS+ +IE IP  LK ++ T +EI  + +++ A+ R 
Sbjct: 893  YLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKKIFLTAFEIEPEWIIECASRRQ 952

Query: 903  AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK--- 959
             +ID  QSLN+Y+AE +  K+S+M+   WK GLKT  YYLR+  A +  +  +D  K   
Sbjct: 953  KWIDMGQSLNLYLAEPDGKKLSNMYLTAWKKGLKT-TYYLRSSAATSVEKSFVDINKRGI 1011

Query: 960  ----MANAMAS 966
                M N  AS
Sbjct: 1012 QPRWMKNKSAS 1022

Length = 1046

>gnl|CDD|236330 PRK08665, PRK08665, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  143 bits (364), Expect = 3e-35
 Identities = 111/390 (28%), Positives = 185/390 (47%), Gaps = 70/390 (17%)

Query: 103 HGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWG 162
           H DI +F+  K++ G  E    ++     I + FM  VE+D ++ L+ P T         
Sbjct: 182 HPDIMEFITCKEDNG--ELTNFNISVA--ITEAFMEAVEADEEYDLINPRT--------- 228

Query: 163 EKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIK 222
                        G+ + ++ AR+++  I++   E G P +++ D  NR +   +LG I+
Sbjct: 229 -------------GEVVGRLNAREVFDLIVEMAWENGEPGIVFIDRINRDNPTPHLGEIE 275

Query: 223 CSNLCTE--IVEYTSKDEVAVCNLASIAL-NMYINPADKTYNFTKLKDVAKIVTKNLNKI 279
            +N C E  ++ Y S      CNL SI L  M  N      ++ KL++V  +  + L+ +
Sbjct: 276 STNPCGEQPLLPYES------CNLGSINLSKMVKN---GDVDWEKLREVVHLAVRFLDNV 326

Query: 280 IDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGAL 339
           ID N YP+ +       +R IG+GV G AD+ IQ+ +P+D  E+  L +++ + I   A 
Sbjct: 327 IDANKYPLPQIEEMTKGNRKIGLGVMGWADMLIQLGIPYDSEEAVELAEKVMKFIQDEAH 386

Query: 340 EASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLL-- 397
            AS E+A   GP+  YEGS        YD  G+ P                 +RN+ +  
Sbjct: 387 AASRELAEERGPFPNYEGS-------IYDKDGLGP-----------------MRNATVTT 422

Query: 398 IAPMPTASTAQILGNNES-FEPYTSNIYSRRVLSGEFQV-VNHHLLRDLVELGLWDDNMK 455
           IAP  T S   I+    S  EP  +  ++R V+ GE  V VN        E G + + + 
Sbjct: 423 IAPTGTIS---IIAGCSSGIEPLFALSFTRNVMDGERLVEVNPVFEAAAKEEGFYSEELM 479

Query: 456 DQLIVNNGSIQDIEGIPQKLKDLYKTVWEI 485
           ++ I   GSIQDI+ +P+ ++ ++ T  +I
Sbjct: 480 EK-IAEKGSIQDIDEVPEDVRRVFVTAHDI 508

Length = 752

>gnl|CDD|236378 PRK09102, PRK09102, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  140 bits (356), Expect = 1e-34
 Identities = 66/185 (35%), Positives = 107/185 (57%), Gaps = 3/185 (1%)

Query: 797 RNSLLIAPMPTASTAQILGN-NESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWD 855
           R S  +A  PTAS + ILGN +   EP  +N Y+ + L G F V N +L + L E G   
Sbjct: 418 RFSTKMAIAPTASISIILGNTSPGIEPIAANYYTHKTLKGSFTVKNKYLEKLLEEKGKDT 477

Query: 856 DNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYM 915
           D +   ++ N GS+Q ++ + ++ KD++KT +EI Q+ ++++AADR  +IDQ+QSLN+++
Sbjct: 478 DEVWSSILTNEGSVQHLDFLSEEEKDVFKTAFEIDQRWIIELAADRQKYIDQAQSLNLFL 537

Query: 916 -AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEE 974
            A +    ++ +HF  WK G+K+ +YY R+K    A + + D  K      S   R  +E
Sbjct: 538 PANVPKRDLNKLHFEAWKKGVKS-LYYQRSKSVQRADKVSHDVLKKRLVEKSAFNRDYDE 596

Query: 975 IQADQ 979
             A Q
Sbjct: 597 CLACQ 601

Length = 601

>gnl|CDD|236069 PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  136 bits (343), Expect = 7e-33
 Identities = 117/489 (23%), Positives = 206/489 (42%), Gaps = 81/489 (16%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA A+YL  +H D+ +FL+ KK    E+ R   +  GL +P +F    +    + +  
Sbjct: 242 RPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFELAKEGKDFYMFA 301

Query: 151 PNTCRGLSDSWGEKFDDL-----YKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYML 204
           P+T   +   +G   DD+     Y    A     ++   AR++   I  +Q+++G PY++
Sbjct: 302 PHT---VYKEYGVTLDDIDLEEMYDDLVANPNVKKKKKNAREMLNKIAQTQLQSGYPYLM 358

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVE---------YTSKDEVAV---CNLASI-ALNM 251
           +KD  N+     N+G IK SNLCTEI +         Y  +DE+     CNL S+  +N+
Sbjct: 359 FKDNANKVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNV 418

Query: 252 YINPADKTYNFTKLKDVAKIVTKNLNKIIDV-NFYPVEEARNSNMRHRPIGIGVQGLADL 310
             +         K +D        L  + DV N       R +N     +G+GV  L   
Sbjct: 419 MES--------KKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGY 470

Query: 311 FIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQG--ILQY 367
             + ++ ++  E++      F  + + ++E S EIA   G  YQ +E S  + G    +Y
Sbjct: 471 LAKNKIGYESEEAKDFANTFFMMMNFYSIERSMEIAKERGETYQDFEKSDYANGKYFEKY 530

Query: 368 DMWGVTP-----TDLW---------DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNN 413
                 P      +L+         DW  L++ + ++G+ ++  +A  PT S + +    
Sbjct: 531 TTQDFEPKFEKVRELFEGMHIPTKEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNAT 590

Query: 414 ESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQ 473
            S  P    I  R   + E      + +  L    +W                       
Sbjct: 591 SSVMPIVDQIERRTYGNAE----TFYPMPFLSPQTMW----------------------- 623

Query: 474 KLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGLK 532
                YK+ +   Q  ++D+ A     IDQ  S  +Y+ +EI+  +++ ++ +    GLK
Sbjct: 624 ----YYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHHKGLK 679

Query: 533 TGMYYLRTK 541
           + +YY R K
Sbjct: 680 S-LYYTRNK 687

Length = 699

>gnl|CDD|211905 TIGR04170, RNR_1b_NrdE, ribonucleoside-diphosphate reductase, class 1b, alpha subunit

 Score =  136 bits (343), Expect = 8e-33
 Identities = 119/490 (24%), Positives = 201/490 (41%), Gaps = 84/490 (17%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YL  +H DI  FL+ KK    E+ R + L  G+ IPD+F    + +    L  
Sbjct: 237 RQGAGAVYLNAFHPDILRFLDTKKENADEKIRIKTLSLGVVIPDKFFELAKENKDMYLFS 296

Query: 151 PNTCRGLSDSWGEKFDDL-----YKKYEAEGKFIRQ--VPARKLWFAILDSQIETGTPYM 203
           P     +   +G  FDD+     Y +  A  + IR+  + AR  +  + + Q E+G PY+
Sbjct: 297 PYD---VEREYGVPFDDIDITEKYDEMVANPR-IRKKKINARDFFQTLAEIQFESGYPYI 352

Query: 204 LYKDACNRKSNQQNLGTIKCSNLCTEIV---------EYTSKDEVAV---CNLASI-ALN 250
           +++D  NR      +G IK SNLC+EI+         +Y   DE+     CNL S+   N
Sbjct: 353 MFEDTVNRA--NPIIGRIKMSNLCSEILQVSEASLYNDYLEYDEIGHDISCNLGSLNIAN 410

Query: 251 MYINPADKTYNFTKLKDVAKIVTKNLNKIIDV-NFYPVEEARNSNMRHRPIGIGVQGLAD 309
           +  +P              +   + L  + D+ +   V   R  N     IG+G   L  
Sbjct: 411 VMDSP--------DFGRTVETAIRALTAVSDMSHIRNVPSIRKGNAASHAIGLGQMNLHG 462

Query: 310 LFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGIL--Q 366
              +  + +   E+       F T+ Y +L  S EIA   G  +  +E S  + G    +
Sbjct: 463 YLAREGIAYGSPEALDFTNIYFMTVNYYSLRRSMEIARERGETFAGFEQSDYASGEYFDK 522

Query: 367 YDMWGVTPT-----DLW---------DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN 412
           Y      P      +L+         DWA LK+ + ++G+ +   +A  PT S + I  +
Sbjct: 523 YVSQEFAPKTEKVRELFEGIHIPTREDWAELKDDVMEYGLYHQNRLAVAPTGSISYINHS 582

Query: 413 NESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIP 472
             S  P  S I  R+   G+   V +          L ++N+                  
Sbjct: 583 TSSIHPIVSKIEIRK--EGKIGRVYYPA------PFLTNENL------------------ 616

Query: 473 QKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGL 531
               + Y+  ++I  + ++D  A     +DQ  SL ++         ++    + W  G+
Sbjct: 617 ----EYYQDAYDIDMEKIIDTYATATQHVDQGLSLTLFFKDTATTRDLNRAQIYAWHKGI 672

Query: 532 KTGMYYLRTK 541
           KT +YY+R +
Sbjct: 673 KT-LYYIRLR 681

Members of this family are NrdE, the alpha subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. Length = 698

>gnl|CDD|180772 PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional

 Score =  130 bits (328), Expect = 3e-31
 Identities = 114/465 (24%), Positives = 186/465 (40%), Gaps = 75/465 (16%)

Query: 103 HGDIFDFLELKKNTGKEEFRARDLFYGL--WIPDEFMRRVESDAQWSLMCPNTCRGLSDS 160
           H D+  F+  K+       RAR   + L   + D FM+ V  D  W+L      R  +  
Sbjct: 179 HPDLLAFVAAKRG------RARWTTFNLSVAVTDAFMQAVAQDLPWALRHRAPPRRAAGG 232

Query: 161 WGEKFDDLYKKYEAEGKFI-RQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLG 219
                D         G +    VPAR LW  I+ +  ++  P +L+ D  +  +  +   
Sbjct: 233 ALRGAD---------GAWTYATVPARHLWREIVSAARDSAEPGLLFVDTIDAANPLREHE 283

Query: 220 TIKCSNLCTE--IVEYTSKDEVAVCNLASIALNMYI-NP----ADKTYNFTKLKDVAKIV 272
            I  +N C E  +  Y S      C L  I L+ ++ +P     +  ++F  L    +I 
Sbjct: 284 RIDATNPCGEQPLPPYGS------CVLGPIDLSRFVRHPFGVGGEPRFDFAALATAVRIQ 337

Query: 273 TKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFE 332
            + L+  +D+  +P+        + R IG+GV GLAD    MRL +D   +R + + I  
Sbjct: 338 VRMLDNALDLTRWPLAAHAREARQKRRIGVGVTGLADALTMMRLRYDSPAAREMARYIAS 397

Query: 333 TIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGV 392
            + + A  AS  +AA  G Y   + +      L+       P       A+   IA+HG+
Sbjct: 398 DLRHHAYAASAALAAERGAYPLCDPAAHLDA-LRA----GPPLPH----AVCHAIARHGL 448

Query: 393 RNSLLIAPMPTASTAQILGNNES--FEPYTSNIYSRRVLSGE-----FQVVNH--HLLRD 443
           RNS L++  P  S +   G+N S   EP  + I  R V +G       +  NH   L R 
Sbjct: 449 RNSHLLSFAPVGSVSLAFGDNCSPGIEPARAWIEHRPVRAGAGGARGMRAENHAYRLFRS 508

Query: 444 LVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQ 503
           L                         G    L D + T  ++     L M A    ++D 
Sbjct: 509 L------------------------RGERAALPDYFVTAADVAPADHLAMRAALQPYVDA 544

Query: 504 SQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 547
             S  + +    + A++ ++ F  W+ GLK G+   R  PA +A+
Sbjct: 545 GISKTVTLPNHYSLAEVDALLFQAWRAGLK-GITIFRPDPALDAV 588

Length = 595

>gnl|CDD|180610 PRK06539, PRK06539, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  131 bits (330), Expect = 5e-31
 Identities = 66/181 (36%), Positives = 107/181 (59%), Gaps = 3/181 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW AL+ K+ + G+RN+ L+A  PTAS   + G     +P  S I+SR   SG+F  VN 
Sbjct: 602 DWDALRAKV-RGGMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGKFLEVNR 660

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+ DL ELGLW+  ++++++ + G IQ+I  IP ++K LY+T +++     L++AA   
Sbjct: 661 NLVADLKELGLWE-TVREEILRSQGDIQEIAAIPDEIKALYRTSFQLSPYAFLEVAARAQ 719

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            ++DQ+ S N+Y+   +   M  ++   W++G+KT  YYL  KP   A Q T+   K A 
Sbjct: 720 KWVDQAISRNMYLESRDIGDMMDIYTAAWEMGVKT-TYYLHMKPRHTAEQSTVKVNKSAE 778

Query: 963 A 963
            
Sbjct: 779 R 779

Length = 822

>gnl|CDD|233902 TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate reductase, alpha subunit

 Score =  124 bits (314), Expect = 2e-29
 Identities = 46/89 (51%), Positives = 58/89 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA A+YLE WH DI +FL+LKKN G E  R  +LFYGLWIPD FM+RVE D  W L  
Sbjct: 155 RPGAAAVYLEVWHPDIEEFLDLKKNNGDERRRCDNLFYGLWIPDLFMKRVEEDKDWYLFS 214

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVY 89
           P    GL   +GE+F++ Y++ E +    
Sbjct: 215 PYDVPGLYGLYGEEFEEEYERLEKDVEAR 243

This model represents the alpha (large) chain of the class I ribonucleotide reductase (RNR). RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Class I RNR's generate the required radical (on tyrosine) via a "non-heme" iron cofactor which resides in the beta (small) subunit. The alpha subunit contains the catalytic and allosteric regulatory sites. The mechanism of this enzyme requires molecular oxygen. E. Coli contains two versions of this enzyme which are regulated independently (NrdAB and NrdEF, where NrdA and NrdE are the large chains ). Most organisms contain only one, but the application of the gene symbols NrdA and NrdE are somewhat arbitrary. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]. Length = 617

>gnl|CDD|181392 PRK08332, PRK08332, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  122 bits (306), Expect = 6e-28
 Identities = 73/253 (28%), Positives = 132/253 (52%), Gaps = 7/253 (2%)

Query: 238  EVAVCNLASIALNMYINPADKT---YNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSN 294
            E   CNLASI L  ++   +     +++ +   V + V K L+  IDVN +P+ E   + 
Sbjct: 1304 EYESCNLASINLAKFVKYDENGKPYFDWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDYNT 1363

Query: 295  MRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQT 354
               R IG+G+ GLAD   ++ +P++  E     +++ E + + A + S E A + G +  
Sbjct: 1364 KLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAYKYSVEAAKKRGTFPL 1423

Query: 355  YEGSPVSQGILQYDMWGVTPTDLWD--WAALKEKIAKHGVRNSLLIAPMPTASTAQILGN 412
            YE +   +G L  +  G    ++W+  W  L E+I K+GVRN+++    PT S + I   
Sbjct: 1424 YEKTEYPKGELPVE--GFYHPEIWNLPWDKLVEEIKKYGVRNAMVTTCPPTGSVSMIADT 1481

Query: 413  NESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIP 472
            +   EP  + +Y + V  GEF  V+     +L + GL+ + +  ++  N GS+Q +E IP
Sbjct: 1482 SSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKKRGLYSEELLKKISDNYGSVQGLEEIP 1541

Query: 473  QKLKDLYKTVWEI 485
            + ++ ++ T  +I
Sbjct: 1542 EDMQRVFVTALDI 1554

Length = 1740

>gnl|CDD|236152 PRK08115, PRK08115, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  118 bits (298), Expect = 3e-27
 Identities = 91/328 (27%), Positives = 147/328 (44%), Gaps = 33/328 (10%)

Query: 135 EFMRRVESDAQWSLMCPNT-------CRGLSDSWGEKFDDLYKKYEAEG---KFIRQVPA 184
           EFM  VE+D ++ L  P+            ++ W E  D   +++E  G   +  R++ A
Sbjct: 378 EFMEAVENDEEYELRFPDVENYTEEEMEIYNEEWHEVGD--VREWEKMGYPVRTYRKIKA 435

Query: 185 RKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLG-TIKCSNLCTE--IVEYTSKDEVAV 241
           ++LW  I      +  P + + D  N  +N +  G  +  +N C E  +  Y+      V
Sbjct: 436 KELWNLINICATYSAEPGIFFIDNANEMTNAKAYGQKVVATNPCGEQPLAPYS------V 489

Query: 242 CNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIG 301
           CNLA+I L    +   KT ++ KLK   ++  +  + +ID   Y +EE +   +  R +G
Sbjct: 490 CNLAAINLANMADKETKTVDYEKLKRTVEVGVRMQDNVIDATPYFLEENKKQALGERRVG 549

Query: 302 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSP-- 359
           +GV GL DL I     +   E   L  QIFETI   A   S E+A   G +    G    
Sbjct: 550 LGVMGLHDLLIYCETVYGSEEGNQLVDQIFETIATTAYRTSIELAKEKGSFPFLVGQTEE 609

Query: 360 ----VSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNES 415
               + +  +        P D      ++E I K+G+RNS L+   PT ST  ++G +  
Sbjct: 610 ETAKLREAFINTGYMKKMPED------IREDILKYGIRNSHLLTVAPTGSTGTMVGVSTG 663

Query: 416 FEPYTSNIYSRRVLSGEFQVVNHHLLRD 443
            EPY S  Y R    G+F  V   ++++
Sbjct: 664 LEPYFSFSYYRSGRLGKFIEVKADIVQE 691

Length = 858

>gnl|CDD|236266 PRK08447, PRK08447, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  117 bits (296), Expect = 5e-27
 Identities = 46/83 (55%), Positives = 61/83 (73%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLEPWH DI DF++L+KN+G+E  RA DLF  LWI D FM+RVE DA W+L  
Sbjct: 289 RKGAIAVYLEPWHMDISDFIDLRKNSGEERRRAHDLFPALWINDLFMKRVEEDAMWTLFD 348

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P  C+ L++ +GE+F+  Y +YE
Sbjct: 349 PYECKDLTELYGEEFEKRYLEYE 371

Length = 789

>gnl|CDD|153088 cd01679, RNR_I, Class I ribonucleotide reductase

 Score =  112 bits (282), Expect = 6e-26
 Identities = 38/59 (64%), Positives = 43/59 (72%), Gaps = 1/59 (1%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLM 59
           R GA A+YLE WH DI +FL+LKKN G E  RARDLFYG+WIPD FM RVE D  W  +
Sbjct: 125 RKGAGAVYLEIWHPDIEEFLDLKKNNGDERRRARDLFYGVWIPDLFMERVERD-LWRKI 182

Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (which is found in prokaryotes only). It is a tetrameric enzyme of two alpha and two beta subunits; this model covers the major part of the alpha or large subunit, called R1 in class Ia and R1E in class Ib. Length = 460

>gnl|CDD|235952 PRK07187, PRK07187, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  109 bits (273), Expect = 3e-24
 Identities = 95/376 (25%), Positives = 155/376 (41%), Gaps = 47/376 (12%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YL   H D+  FL+ K+    E+ R + L  GL IPD      + +   +L  
Sbjct: 243 RQGAGAVYLHAHHPDVLTFLDTKRENADEKIRIKSLSLGLVIPDITFELAKENKDMALFS 302

Query: 151 PNTC-----RGLSD-SWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P        + +SD S  E++ +L      +  +I    ARKL+  I +   E+G PY+L
Sbjct: 303 PYDIKREYGKPMSDISITEEYYNLLANPAIKKTYIS---ARKLFQTIAELHFESGYPYLL 359

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVE------------YTSKDEVAVCNLASIALNMY 252
           + D  N+++     G I  SNLC+EI +            +    E   CNL S+ +   
Sbjct: 360 FDDTVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFNEDLSFKKIGEDICCNLGSLNIAKA 419

Query: 253 INPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
           +    +   F +L   +      ++++ D++  P  E    N  +  +G+G   L     
Sbjct: 420 MESGPE---FEQLIYTSIRALDRVSRVSDLSCAPSIE--KGNAANHAVGLGAMNLHGFLA 474

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQG-------IL 365
              + +D  E+       F T+ Y A +AS ++A   G +  +E S  + G         
Sbjct: 475 TNHIYYDSKEAVDFTDLFFYTMAYYAFKASNQLAKEKGAFAGFELSKYADGSYFDKYTKE 534

Query: 366 QYDMW--------------GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILG 411
               W              GVT     DW  L E I K G+ NS L+A  PT S + +  
Sbjct: 535 DAKKWTPKTAKVKELLQKYGVTIPTQADWQELVEDIKKTGLANSHLLAVAPTGSISYLSS 594

Query: 412 NNESFEPYTSNIYSRR 427
              S +P  + +  R+
Sbjct: 595 CTPSLQPVVAPVEVRK 610

Length = 721

>gnl|CDD|217257 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel domain

 Score =  102 bits (256), Expect = 1e-22
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 6/91 (6%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GLAD   ++ +P+D  E+R L  +IFETIYY AL+AS E+A   GP+  +EGS  +
Sbjct: 288 LGVMGLADALAKLGIPYDSEEARELADEIFETIYYYALKASNELAKEKGPFPGFEGSKYA 347

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGL 683
           +G               DW  L+     +GL
Sbjct: 348 KG------EFHAIPLREDWEELREDIKKHGL 372

Length = 516

>gnl|CDD|235828 PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase; Validated

 Score =  102 bits (256), Expect = 5e-22
 Identities = 124/496 (25%), Positives = 197/496 (39%), Gaps = 106/496 (21%)

Query: 99  LEPWHGDIFDFLELKKNTGKEEFRARDL-----------------FY-----GLWIPDEF 136
           L+  H DI +F+E K    KEE + R L                  Y      + + DEF
Sbjct: 233 LDVDHPDIEEFIETK---AKEEDKIRALRDAGYDMDLGGEAYSSVQYQNANNSVRVSDEF 289

Query: 137 MRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQI 196
           MR VE+D ++ L      R  +D                G+ I  V A++L+  I ++  
Sbjct: 290 MRAVENDGEFGL------RARTD----------------GEVIETVDAKELFRKIAEAAW 327

Query: 197 ETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPA 256
           E   P + Y D  N        G I  SN C+E   Y   D  + CNLAS+ L  ++   
Sbjct: 328 ECADPGIQYDDTINDWHTCPESGRINASNPCSE---YMFLDNSS-CNLASLNLMKFLRD- 382

Query: 257 DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEE-ARNSNMRHRPIGIGVQGLADLFIQMR 315
           D T++    +   ++V   +   I    +P E+ ARN+    R +G+G   L  L +   
Sbjct: 383 DGTFDVESFRHAVELVITAMEISICFADFPTEKIARNTRA-FRQLGLGYANLGALLMATG 441

Query: 316 LPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE-GSPVSQGILQ-------- 366
           LP+D +  R L   I   +   A   S E+A   GP++ Y   +     +++        
Sbjct: 442 LPYDSDGGRALAAAITSLMTGEAYRRSAELAGVVGPFEGYARNAEPHLRVMRKHAAANDA 501

Query: 367 YDMWGVTPTDLWD-----WAALKEKIAKHGVRNS--LLIAP-------MPTASTAQILGN 412
               G     L +     W    E   K+G RN+   ++AP       M   +T      
Sbjct: 502 IRPLGEVDAALLEAAKEAWDDALELGEKNGYRNAQASVLAPTGTIGFMMDCDTT------ 555

Query: 413 NESFEPYTSNI-YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKD--QLIVNNGSIQDIE 469
               EP  + + Y + V  G  ++VN  + R L +LG  ++ ++   + I  +G    IE
Sbjct: 556 --GIEPDFALVKYKKLVGGGSMKIVNQTVPRALKKLGYSEEQIEAIVEYIAEHGH---IE 610

Query: 470 GIPQKLKDLYKTVWEIPQKT------------VLDMAADRGAFIDQSQSLNIYMAE-INY 516
           G P  LK  +  V++   K             V  MAA +  F+  + S  + M E    
Sbjct: 611 GAPG-LKPEHYAVFDCAMKPASGERSISPMGHVRMMAAVQ-PFLSGAISKTVNMPEDATV 668

Query: 517 AKMSSMHFHGWKLGLK 532
             +  ++  GWKLGLK
Sbjct: 669 EDIEEVYLEGWKLGLK 684

Length = 953

>gnl|CDD|188230 TIGR02510, NrdE-prime, ribonucleoside-diphosphate reductase, alpha chain

 Score = 99.6 bits (248), Expect = 1e-21
 Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 4/159 (2%)

Query: 795 GVRNSLLIAPMPTASTAQILGN-NESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 853
           G RN+ LIA  PT S+A ILG  + S EP  SN + +    G+    N  L + L E G 
Sbjct: 378 GRRNATLIAIAPTKSSAFILGQVSPSIEPLVSNYFIQDSNKGDVVRKNPVLAKVLKEKGT 437

Query: 854 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 913
             + + D +  +NGS+Q ++ +  + K ++KT +EI Q  ++ +AA R   IDQ+QSLN+
Sbjct: 438 DQELVWDIITYHNGSVQHLDFLTDEEKSVFKTFYEISQMAIIRLAAARQKHIDQAQSLNL 497

Query: 914 YM--AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 950
           ++   E      + +    W  GLK+ +YY R++  A A
Sbjct: 498 FISPDEKPSVDANVLRAFAWDPGLKS-LYYQRSERGAQA 535

This model represents a small clade of ribonucleoside-diphosphate reductase, alpha chains which are sufficiently divergent from the usual Class I RNR alpha chains (NrdE or NrdA, TIGR02506) as to warrant their own model. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]. Length = 548

>gnl|CDD|235966 PRK07207, PRK07207, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score =  100 bits (251), Expect = 2e-21
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 447 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEDGEWTLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D +G+ F++ Y  YEA
Sbjct: 507 PSEVPDLHDLFGKAFEEAYTAYEA 530

Length = 965

>gnl|CDD|223287 COG0209, NrdA, Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]

 Score = 99.0 bits (247), Expect = 4e-21
 Identities = 36/95 (37%), Positives = 52/95 (54%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YL+ WH DI +FL+ K+N G E  RA D+  G+WIPD FM+R +    W+L  
Sbjct: 215 RRGAQAVYLDIWHPDIEEFLDAKRNNGDEILRAFDISVGVWIPDLFMKRAKEGEDWTLFS 274

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAF 95
           P       D +G +F++  +     G+   R  A 
Sbjct: 275 PRDGYEAPDVYGAEFEEYAEYEADPGIRKKRIKAR 309

Length = 651

>gnl|CDD|180921 PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 95.9 bits (239), Expect = 4e-20
 Identities = 102/376 (27%), Positives = 151/376 (40%), Gaps = 56/376 (14%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YL  +H DI  FL  KK    E+ R + L  G+ +PD+F      +    L  
Sbjct: 245 RQGAGVVYLNVFHPDIIAFLSTKKENADEKVRVKTLSLGVTVPDKFYELARKNEDMYLFS 304

Query: 151 PNTCRGLSDSWGEKFD--DLYKKYE---AEGKFIRQ-VPARKLWFAILDSQIETGTPYML 204
           P     +   +G  F+  D+ K+Y+   A     +  + AR L   I   Q E+G PY++
Sbjct: 305 P---YSVEKEYGVPFNYVDITKEYDELVANPNIRKTKIKARDLETEISKLQQESGYPYII 361

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIV------------EYTSKDEVAVCNLASI-ALNM 251
             D  NR +N  + G I  SNLC+EI+            EY        CNL S   +NM
Sbjct: 362 NIDTANR-ANPID-GKIIMSNLCSEILQVQTPSLINDAQEYVKMGTDISCNLGSTNIVNM 419

Query: 252 YINPADKTYNFTKLKDVAKIVTKNLNKIIDV-NFYPVEEARNSNMRHRPIGIGVQGLADL 310
             +P     +F +  +      + L  + D  N   V   ++ N +   IG+G  GL   
Sbjct: 420 MTSP-----DFGRSIETM---VRALTFVTDSSNIDAVPSIKHGNSQAHTIGLGAMGLHSY 471

Query: 311 FIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAAR--------------DGP----Y 352
             Q  + +   ES       F  + Y  L AS  IA                DG     Y
Sbjct: 472 LAQNHIEYGSPESLEFTSIYFMLLNYWTLVASNNIARERGETFHNFEKSKYADGSYFDKY 531

Query: 353 QTYEGSPVSQGI--LQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQIL 410
            T +  P S  +  L   ++  T     DWAAL++ + K G+ +   +A  P  S + I 
Sbjct: 532 VTGDFVPKSDKVKELFKGIFIPTAA---DWAALRDAVMKDGLYHQNRLAVAPNGSISYIN 588

Query: 411 GNNESFEPYTSNIYSR 426
             + S  P T  I  R
Sbjct: 589 DTSASIHPITQRIEER 604

Length = 720

>gnl|CDD|233902 TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate reductase, alpha subunit

 Score = 95.1 bits (237), Expect = 5e-20
 Identities = 40/98 (40%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGV GL D+  ++ LP+D  E+R LN +IFE IYY A++AS E+A   GP+  + GS  +
Sbjct: 371 IGVMGLHDVLAKLGLPYDSEEARDLNDRIFEAIYYYAIKASAELAKEKGPFPGFSGSKYA 430

Query: 653 QGILQYDMWGVTPTDLW-------DWAALKVLALVYGL 683
           +G L  D W  T            DW AL+     YGL
Sbjct: 431 KGWLHPDTWEKTIDPKTSMAPTEEDWEALRERIKEYGL 468

This model represents the alpha (large) chain of the class I ribonucleotide reductase (RNR). RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Class I RNR's generate the required radical (on tyrosine) via a "non-heme" iron cofactor which resides in the beta (small) subunit. The alpha subunit contains the catalytic and allosteric regulatory sites. The mechanism of this enzyme requires molecular oxygen. E. Coli contains two versions of this enzyme which are regulated independently (NrdAB and NrdEF, where NrdA and NrdE are the large chains ). Most organisms contain only one, but the application of the gene symbols NrdA and NrdE are somewhat arbitrary. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]. Length = 617

>gnl|CDD|171440 PRK12365, PRK12365, ribonucleotide-diphosphate reductase subunit alpha; Provisional

 Score = 95.8 bits (238), Expect = 6e-20
 Identities = 39/83 (46%), Positives = 54/83 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH D  DFLEL+KNTG E  R  D+    WIPD F +R++    W+L  
Sbjct: 530 RKGAVCVYLEVWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLQQKGTWTLFS 589

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+   GL +++GE+F+ LY++YE
Sbjct: 590 PDDVPGLHEAYGEEFEKLYEEYE 612

Length = 1046

>gnl|CDD|236179 PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 93.2 bits (232), Expect = 2e-19
 Identities = 123/504 (24%), Positives = 196/504 (38%), Gaps = 104/504 (20%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YL   H DI  FL+ K+    E+ R + L  G+ IPD      + +    L  
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKENEDMYLFS 310

Query: 151 PNTC-----RGLSD-SWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P        +  +D S  EK+D++        K I    AR+ +  + + Q E+G PY++
Sbjct: 311 PYDVERVYGKPFADISVTEKYDEMVADERIRKKKIN---AREFFQTLAEIQFESGYPYIM 367

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVA------------VCNLASIALNMY 252
           ++D  NR +     G I  SNLC+EI++  S  E               CNL S    + 
Sbjct: 368 FEDTVNRANPIA--GRINMSNLCSEILQVNSASEYNEDLSYAHIGKDISCNLGS----LN 421

Query: 253 INPADKTYNFTKLKDVAKIVTKNLNKIIDV-NFYPVEEARNSNMRHRPIGIGVQGLADLF 311
           I     + +F +  + A    + L  + D+ +   V      N     IG+G   L    
Sbjct: 422 IAHTMDSPDFGRTVETA---IRALTAVSDMSHIRSVPSIEKGNAASHAIGLGQMNLHGYL 478

Query: 312 IQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPY-QTYEGSPVSQGIL--QYD 368
            +  + +   E+       F T+ Y AL AS  +A   G     +E S  + G    +Y 
Sbjct: 479 AREGIFYGSEEALDFTNIYFYTVTYHALRASNLLARERGETFAGFEQSKYASGEYFDKYT 538

Query: 369 --MW--------------GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN 412
              W              G+T     DWA L++ + +HG+ N  L A  PT S + I  +
Sbjct: 539 QQDWQPKTAKVRELFARAGITIPTQEDWAQLRDDVMRHGIYNQNLQAVPPTGSISYINHS 598

Query: 413 NESFEPYTSNIYSR------RVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQ 466
             S  P  S I  R      RV      + N              DN+            
Sbjct: 599 TSSIHPIVSKIEIRKEGKIGRVYYPAPYMTN--------------DNL------------ 632

Query: 467 DIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMA------EINYAKMS 520
                     + Y+  +EI  + ++D  A     +DQ  SL ++        +IN A++ 
Sbjct: 633 ----------EYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDTATTRDINKAQI- 681

Query: 521 SMHFHGWKLGLKTGMYYLRTKPAA 544
               + W+ G+KT +YY+R +  A
Sbjct: 682 ----YAWRKGIKT-LYYIRLRQMA 700

Length = 714

>gnl|CDD|178056 PLN02437, PLN02437, ribonucleoside--diphosphate reductase large subunit

 Score = 86.3 bits (214), Expect = 4e-17
 Identities = 30/36 (83%), Positives = 34/36 (94%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LWFAIL+SQIETGTPYML+KD+CNRKSNQQNL  I
Sbjct: 388 QLWFAILESQIETGTPYMLFKDSCNRKSNQQNLGTI 423

Length = 813

>gnl|CDD|181700 PRK09209, PRK09209, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 86.3 bits (214), Expect = 4e-17
 Identities = 39/91 (42%), Positives = 49/91 (53%), Gaps = 7/91 (7%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YL+ WH DI  FL+L+ N G E  RA D+F G+ IPD FM  VE    W L  
Sbjct: 310 RKGAIAVYLDVWHKDIESFLDLRLNNGDERLRAHDVFTGVCIPDLFMEAVERRGDWYLFD 369

Query: 61  PNACR-----GLSDSWGEKFDDLY--KKYEA 84
           P+  +      L D + EK  D    +KYE 
Sbjct: 370 PHEVKKVMGWYLEDFYDEKKGDGSFREKYEE 400

Length = 761

>gnl|CDD|178056 PLN02437, PLN02437, ribonucleoside--diphosphate reductase large subunit

 Score = 83.6 bits (207), Expect = 3e-16
 Identities = 31/54 (57%), Positives = 45/54 (83%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E ++++YN VN+ +G + P+I+D  Y+IIMKNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETVKDMYNHVNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFK 149

Length = 813

>gnl|CDD|223287 COG0209, NrdA, Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]

 Score = 83.2 bits (206), Expect = 3e-16
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GLADL  Q+ +P+   E+   N ++FE I Y AL+AS E+A   GPY  +EGS  +
Sbjct: 428 LGVMGLADLLAQLGIPYGSEEALKFNDRLFEYIAYYALKASAELAKERGPYPYFEGSRWA 487

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGL 683
           +GIL  D   +      DW  L+     +GL
Sbjct: 488 RGILPIDYPRLFGIT-EDWEKLREDIKKHGL 517

Length = 651

>gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 79.9 bits (197), Expect = 4e-15
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 6/88 (6%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G  AI L+ WH DI +FL+LK N G +  +A D+F G+  PD FM+R+E    WSL  
Sbjct: 312 RKGGAAITLDIWHKDIPEFLDLKTNNGDDRRKAHDIFPGVSYPDLFMKRLEKRENWSLFD 371

Query: 61  P---NACRG--LSDSWGEKFDDLY-KKY 82
           P      +G  L D + E+    + KKY
Sbjct: 372 PHEIKKVKGYSLEDYYDEEDRKEFTKKY 399

Length = 764

>gnl|CDD|153088 cd01679, RNR_I, Class I ribonucleotide reductase

 Score = 75.7 bits (187), Expect = 4e-14
 Identities = 24/49 (48%), Positives = 33/49 (67%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG 641
           +GV GL D    +R+P++  E+  LN +IFETI Y AL+ASCE+A   G
Sbjct: 291 LGVMGLHDYLALLRIPYESEEALDLNDRIFETINYYALKASCELAKERG 339

Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (which is found in prokaryotes only). It is a tetrameric enzyme of two alpha and two beta subunits; this model covers the major part of the alpha or large subunit, called R1 in class Ia and R1E in class Ib. Length = 460

>gnl|CDD|236266 PRK08447, PRK08447, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 74.4 bits (183), Expect = 2e-13
 Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 46/184 (25%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV----LSGEFQ 838
           DW  L+EK+ K G+RN  L+A  PT+S + ++G  ++ EP    +Y R+     LSG   
Sbjct: 637 DWEGLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEP----VYKRKWFEENLSGLIP 692

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
           VV  +L  +      W                            Y   +++ QK ++  A
Sbjct: 693 VVVPNLSPET-----WQ--------------------------YYTPAYDLDQKDLIKAA 721

Query: 899 ADRGAFIDQSQSLNIYM----AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 954
           A R  +IDQ QSLNI++    A   Y  ++ ++   WKLGLK+  YYLR++   +     
Sbjct: 722 AVRQKWIDQGQSLNIFLSLDKASGKY--LNEIYTLAWKLGLKS-TYYLRSESPESEEVSV 778

Query: 955 IDKT 958
            D++
Sbjct: 779 ADRS 782

Length = 789

>gnl|CDD|233900 TIGR02504, NrdJ_Z, ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent

 Score = 73.9 bits (182), Expect = 2e-13
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 12/159 (7%)

Query: 785 AALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL-SGEFQVVNHH 843
           A L+E IAK+G+RN+ L    PT + + I G +   EP  + +Y R V   GE   VN  
Sbjct: 421 AELREAIAKYGIRNAQLTTIAPTGTISLIAGTSSGIEPVFALVYFRNVTVGGELLEVNPL 480

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           +   L ELG + D +    +   G+++    +P++L  ++ T  +I  +  + M A    
Sbjct: 481 VELALRELGYYSDEIVKIEVAEKGTVEGAPDLPEELPKVFVTANDISPEDHVLMQAAIQP 540

Query: 904 FIDQSQSLNIYM------AEINYAKMSSMHFHGWKLGLK 936
           ++D S S  I M       ++        +   WKLGLK
Sbjct: 541 WVDSSISKTINMPSDATVEDVKAV-----YLEAWKLGLK 574

This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (Class II RNRs) related to the characterized species from Pyrococcus , Thermoplasma , Corynebacterium and Deinococcus. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]. Length = 589

>gnl|CDD|237077 PRK12364, PRK12364, ribonucleotide-diphosphate reductase subunit alpha; Provisional

 Score = 73.6 bits (181), Expect = 3e-13
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESD--AQWSL 58
           R GA A+YL+ WH DI +FL+L+ N G +  +A D+F  +  PD F + V  D    W L
Sbjct: 389 RQGAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMVRDDINQSWYL 448

Query: 59  MCPNAC-----RGLSDSWGEKFDDLYKK 81
            CP+         L D +GE+++  Y  
Sbjct: 449 FCPHEILTVKGYALEDYYGEEWEKRYLD 476

Length = 842

>gnl|CDD|181700 PRK09209, PRK09209, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 73.2 bits (180), Expect = 4e-13
 Identities = 45/164 (27%), Positives = 65/164 (39%), Gaps = 34/164 (20%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
            W  L  ++A++GVRN+ L+A  P  STAQI G+  S +P  S  Y          V   
Sbjct: 617 QWDELAAQVAENGVRNAYLMAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVT-- 674

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY-KTVWEIPQKTVLDMAADR 901
               DL                                  Y K  +++ Q   +   A R
Sbjct: 675 --APDLSLDTWP---------------------------YYEKGAYKVDQFWSIRQNAAR 705

Query: 902 GAFIDQSQSLNIY-MAEINYAKMSSMHFHGWKLGLKTGMYYLRT 944
              +DQS S N Y  + I  +++  +H   WK GLKT  YY+R+
Sbjct: 706 QRHVDQSISFNFYVPSTIRASELLDLHMTAWKEGLKT-TYYVRS 748

Length = 761

>gnl|CDD|180610 PRK06539, PRK06539, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 70.3 bits (172), Expect = 3e-12
 Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 22/123 (17%)

Query: 3   GAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPN 62
           GA   Y+E WH D  +FL+L++N+G    R R     +WI DEFM+RV++D  W L  P 
Sbjct: 302 GALCFYMENWHMDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDEDWYLFDPL 361

Query: 63  ACRGLSDSWGEKFDDLYKKY--EAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEE 120
               L++ +G+ F   Y +Y  +AE                  G I  F   K+ T +E+
Sbjct: 362 ETPDLNELYGKAFSKRYAQYVEQAEA-----------------GRIRMF---KRITAREQ 401

Query: 121 FRA 123
           FRA
Sbjct: 402 FRA 404

Length = 822

>gnl|CDD|217257 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel domain

 Score = 68.3 bits (168), Expect = 1e-11
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LWF I++S  ETG PY+L+KDA NR + Q++L  I
Sbjct: 173 ELWFKIVESAWETGEPYILFKDAVNRHNPQKHLGTI 208

Length = 516

>gnl|CDD|236378 PRK09102, PRK09102, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 68.1 bits (167), Expect = 1e-11
 Identities = 25/61 (40%), Positives = 40/61 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YL+  H +I +FL+++K TG    +A +L +G+ + DEFM  VE   +W L+ 
Sbjct: 163 RRGSFAVYLDIEHPEIEEFLDIRKPTGDPNRKALNLHHGVCVTDEFMEAVEDGDEWDLIS 222

Query: 61  P 61
           P
Sbjct: 223 P 223

Length = 601

>gnl|CDD|153088 cd01679, RNR_I, Class I ribonucleotide reductase

 Score = 67.2 bits (165), Expect = 2e-11
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 9/63 (14%)

Query: 658 YDM-WGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
            D+ +GV   DL+    ++         LW  IL+SQ ETG PY+L+KD CNRK+ Q++L
Sbjct: 158 RDLFYGVWIPDLF-MERVER-------DLWRKILESQFETGYPYILFKDTCNRKNPQKHL 209

Query: 717 EVI 719
             I
Sbjct: 210 GTI 212

Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (which is found in prokaryotes only). It is a tetrameric enzyme of two alpha and two beta subunits; this model covers the major part of the alpha or large subunit, called R1 in class Ia and R1E in class Ib. Length = 460

>gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 67.9 bits (166), Expect = 2e-11
 Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 33/163 (20%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W  LKE+I K+G+RN  + A  PT ST+ I       +P    ++ R  +  +       
Sbjct: 622 WKKLKEEIKKYGMRNGYITAVAPTGSTSNIANTTAGIDP----VFKRFFMEEKKGSFTPK 677

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
              DL E   W                            YK    I Q+  +     R  
Sbjct: 678 TAPDLNEENFW---------------------------YYKEAHTIDQQWSIKACGVRQR 710

Query: 904 FIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
            IDQ+QS N+Y+  E    ++ +++   WK G+KT +YY+R K
Sbjct: 711 HIDQAQSFNLYITPEYKAKQILNLYIEAWKQGVKT-IYYVRNK 752

Length = 764

>gnl|CDD|181392 PRK08332, PRK08332, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 67.9 bits (165), Expect = 2e-11
 Identities = 34/112 (30%), Positives = 63/112 (56%), Gaps = 2/112 (1%)

Query: 780  DLWD--WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 837
            ++W+  W  L E+I K+GVRN+++    PT S + I   +   EP  + +Y + V  GEF
Sbjct: 1443 EIWNLPWDKLVEEIKKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEF 1502

Query: 838  QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI 889
              V+     +L + GL+ + +  ++  N GS+Q +E IP+ ++ ++ T  +I
Sbjct: 1503 YYVDPVFEAELKKRGLYSEELLKKISDNYGSVQGLEEIPEDMQRVFVTALDI 1554

Length = 1740

>gnl|CDD|237077 PRK12364, PRK12364, ribonucleotide-diphosphate reductase subunit alpha; Provisional

 Score = 66.3 bits (162), Expect = 6e-11
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 37/166 (22%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           +W  L  ++A++G+RN+ L+A  PT+ST+ I G     +P                V+  
Sbjct: 699 EWQRLAREVAENGMRNAYLLAVAPTSSTSIIAGTTAGVDP----------------VMKR 742

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSI--QDIEGIPQKLKDLYKTVWEIPQKTVLDMAAD 900
           + L +                   G++  +    +  K   LYK    I QK  +  A  
Sbjct: 743 YFLEE-----------------KKGALMPRVAPELSDKTFWLYKNAHLIDQKWSIRAAGV 785

Query: 901 RGAFIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           R   IDQ+QS+N+Y+  E    ++  ++   W+ G+KT +YY+R+K
Sbjct: 786 RQRHIDQAQSVNLYITNEFTMRQVLDLYLLAWEEGVKT-IYYVRSK 830

Length = 842

>gnl|CDD|222883 PHA02572, nrdA, ribonucleoside-diphosphate reductase subunit alpha; Provisional

 Score = 62.8 bits (153), Expect = 6e-10
 Identities = 58/189 (30%), Positives = 78/189 (41%), Gaps = 47/189 (24%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEP---YTSNIYSRRVLSGEF-Q 838
           DW +L+E + K+G+RNS L A MP  S++Q+  +    EP     S   S+    G F Q
Sbjct: 591 DWESLREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKKSKE---GPFNQ 647

Query: 839 VV-NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 897
           VV N   L+DL +L LWD   K     N G               Y T   I QK     
Sbjct: 648 VVPNVETLKDLYDL-LWDLAKKG----NKG---------------YLTQVAIMQK----- 682

Query: 898 AADRGAFIDQSQSLNIYMAEINYAK----MSSMH---FHGWKLGLKTGMYYLRTKPAANA 950
                 F+DQ+ S N      NY      MS M     + +  G KT +YY  T+     
Sbjct: 683 ------FVDQAISANTSYDPENYPNGKVPMSVMLDDLLYFYYYGGKT-LYYHNTRDGKGT 735

Query: 951 IQFTIDKTK 959
             + I+  K
Sbjct: 736 EDYEIETPK 744

Length = 753

>gnl|CDD|153089 cd02888, RNR_II_dimer, Class II ribonucleotide reductase, dimeric form

 Score = 59.2 bits (144), Expect = 7e-09
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GLAD+ I++ +P+D  E+R L ++I   I   A  AS E+A   GP+  ++ S   
Sbjct: 297 LGVMGLADMLIKLGIPYDSEEARELAERIMSFIRDAAYRASAELAKERGPFPLFDAS--- 353

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGL 683
               +Y M  V          +      YG+
Sbjct: 354 ----RYLMLKVIVNAKELPDDVLEEIEKYGI 380

Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Many, but not all members of this class are found to be homodimers. Adenosylcobalamin interacts directly with an active site cysteine to form the reactive cysteine radical. Length = 464

>gnl|CDD|236049 PRK07562, PRK07562, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 56.9 bits (138), Expect = 5e-08
 Identities = 59/228 (25%), Positives = 93/228 (40%), Gaps = 32/228 (14%)

Query: 132 IPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAI 191
           + DEF+R VE+D  W+L                          +GK  + + AR LW  I
Sbjct: 403 VTDEFLRAVENDGDWNL----------------------TARTDGKVAKTLKARDLWEKI 440

Query: 192 LDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNM 251
             +   +  P + +    N        G I+ SN C+   EY   D+ A CNLAS+ L  
Sbjct: 441 GYAAWASADPGLQFNTTINDWHTCPASGPIRASNPCS---EYMFLDDTA-CNLASLNLLT 496

Query: 252 YINPADKTYNFTKLKDVAKIVTKNLNKIIDV---NFYPVEEARNSNMRHRPIGIGVQGLA 308
           + +   K ++    +   ++ T  L   I V    F   E A  S    R +G+G   + 
Sbjct: 497 FRDEDTKRFDVEAYEHACRLWTVVLE--ISVLMAQFPSKEIAELS-YEFRTLGLGYANIG 553

Query: 309 DLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 356
            L + M +P+D +E R +   +   +   A   S E+A   GP+  YE
Sbjct: 554 GLLMTMGIPYDSDEGRAICGALSAIMTGVAYATSAEMAKELGPFPGYE 601

Length = 1220

>gnl|CDD|222883 PHA02572, nrdA, ribonucleoside-diphosphate reductase subunit alpha; Provisional

 Score = 56.7 bits (137), Expect = 6e-08
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   Y   WH ++ D L LK N G EE R R L YG+ I D    R   +   +L  
Sbjct: 296 RGGAATAYYPIWHLEVEDLLVLKNNKGVEENRIRHLDYGVQINDLMYERFIKNDYITLFS 355

Query: 61  PNACRG-LSDSWG---EKFDDLYKKYEAE 85
           P+   G L D++    ++F +LY+  E +
Sbjct: 356 PHDVGGELYDAYFADQDRFRELYEALEKD 384

Length = 753

>gnl|CDD|181649 PRK09103, PRK09103, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 56.5 bits (137), Expect = 6e-08
 Identities = 57/201 (28%), Positives = 83/201 (41%), Gaps = 59/201 (29%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEP---YTSNIYSRR-VLSGEFQ 838
           DW  L+E+I  HG+RNS L A MP+ +++QI       EP   Y S   S+  +L    Q
Sbjct: 595 DWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILK---Q 651

Query: 839 VV-NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 897
           VV ++  L+D  EL LW+  M +    N+G +Q + GI QK                   
Sbjct: 652 VVPDYERLKDAYEL-LWE--MPN----NDGYLQ-LVGIMQK------------------- 684

Query: 898 AADRGAFIDQSQSLNIYMAEINY-------AKMSSMHF-----HGWKLGLKTGMYYLRTK 945
                 F+DQS S N      NY        K+            +K G+KT +YY  T+
Sbjct: 685 ------FVDQSISAN-----TNYDPSRFPSGKVPMKQLLKDLLTAYKFGVKT-LYYHNTR 732

Query: 946 PAANAIQFTIDKTKMANAMAS 966
             A   Q  +  +   +    
Sbjct: 733 DGAEDAQDDLQPSIQDDGCEG 753

Length = 758

>gnl|CDD|180610 PRK06539, PRK06539, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 56.1 bits (135), Expect = 8e-08
 Identities = 24/80 (30%), Positives = 42/80 (52%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GV G  D+  ++   ++  E+  L  +I E I Y A++ S ++AA  G Y  +E
Sbjct: 509 NRAIGLGVMGFTDMVERLGYSYESEEAYDLIDRIMEHISYAAIDESADLAAERGAYPNFE 568

Query: 648 GSPVSQGILQYDMWGVTPTD 667
           GS  S+G++  D   +   D
Sbjct: 569 GSRWSRGMVPVDSIALLEAD 588

Length = 822

>gnl|CDD|233900 TIGR02504, NrdJ_Z, ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent

 Score = 55.8 bits (135), Expect = 1e-07
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 13/87 (14%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GLADL I++ +P+D  E+R   +++   I   A  AS E+A   G +  +E S   
Sbjct: 349 LGIMGLADLLIKLGIPYDSEEARAFAEELMRFIADAAYRASAELAKERGAFPLFEAS--- 405

Query: 653 QGILQYDMWGVT------PTDLWDWAA 673
               +Y M  V       P +L +  A
Sbjct: 406 ----KYLMGKVARIPSALPAELREAIA 428

This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (Class II RNRs) related to the characterized species from Pyrococcus , Thermoplasma , Corynebacterium and Deinococcus. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]. Length = 589

>gnl|CDD|235966 PRK07207, PRK07207, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 53.8 bits (130), Expect = 4e-07
 Identities = 24/67 (35%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    +R+P+  +E+     +  E + Y A+ AS E+A   G Y +YEGS  S
Sbjct: 662 LGIMGFQDALYLLRIPYASDEAVEFADRSMEAVSYYAIWASTELAEERGRYSSYEGSLWS 721

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 722 RGILPID 728

Length = 965

>gnl|CDD|180772 PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 35/176 (19%)

Query: 786 ALKEKIAKHGVRNSLLIAPMPTASTAQILGNNES--FEPYTSNIYSRRVLSGE-----FQ 838
           A+   IA+HG+RNS L++  P  S +   G+N S   EP  + I  R V +G       +
Sbjct: 438 AVCHAIARHGLRNSHLLSFAPVGSVSLAFGDNCSPGIEPARAWIEHRPVRAGAGGARGMR 497

Query: 839 VVNH--HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 896
             NH   L R L                         G    L D + T  ++     L 
Sbjct: 498 AENHAYRLFRSL------------------------RGERAALPDYFVTAADVAPADHLA 533

Query: 897 MAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           M A    ++D   S  + +    + A++ ++ F  W+ GLK G+   R  PA +A+
Sbjct: 534 MRAALQPYVDAGISKTVTLPNHYSLAEVDALLFQAWRAGLK-GITIFRPDPALDAV 588

Length = 595

>gnl|CDD|211905 TIGR04170, RNR_1b_NrdE, ribonucleoside-diphosphate reductase, class 1b, alpha subunit

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 32/164 (19%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA LK+ + ++G+ +   +A  PT S + I  +  S  P  S I  R+   G+   V +
Sbjct: 549 DWAELKDDVMEYGLYHQNRLAVAPTGSISYINHSTSSIHPIVSKIEIRK--EGKIGRVYY 606

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
                     L ++N+                      + Y+  ++I  + ++D  A   
Sbjct: 607 PAP------FLTNENL----------------------EYYQDAYDIDMEKIIDTYATAT 638

Query: 903 AFIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
             +DQ  SL ++         ++    + W  G+KT +YY+R +
Sbjct: 639 QHVDQGLSLTLFFKDTATTRDLNRAQIYAWHKGIKT-LYYIRLR 681

Members of this family are NrdE, the alpha subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. Length = 698

>gnl|CDD|181649 PRK09103, PRK09103, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 50.8 bits (122), Expect = 4e-06
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  ++   WH ++   L LK N G EE R R + YG+ I     +R+      +L  
Sbjct: 295 RGGAATLFYPIWHLEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITLFS 354

Query: 61  PNACRGLSDSW---GEKFDDLYKKYEAE 85
           P+   GL D++    ++F+ LY KYE +
Sbjct: 355 PSDVPGLYDAFFADQDEFERLYTKYEQD 382

Length = 758

>gnl|CDD|235796 PRK06406, PRK06406, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 50.2 bits (120), Expect = 5e-06
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 5/122 (4%)

Query: 796 VRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG-EFQVVNHHLLRDLVELGLW 854
           +RNS      PT + + I G + S EP  +  + R VL+G E   VN        + GL+
Sbjct: 570 MRNSTTTTIAPTGTISIIAGCSSSIEPLFAIAFVRHVLNGQELLEVNPLFEEITRKRGLY 629

Query: 855 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI-PQKTVLDMAADRGAFIDQSQSLNI 913
            + +  + +   G++Q+I+ +P+ +K ++ T  EI PQ  VL M A    + D   S  I
Sbjct: 630 SEELMRK-VAETGNLQNID-VPEDIKRIFVTAHEIDPQWHVL-MQATFQRYCDSGVSKTI 686

Query: 914 YM 915
            +
Sbjct: 687 NL 688

Length = 771

>gnl|CDD|211905 TIGR04170, RNR_1b_NrdE, ribonucleoside-diphosphate reductase, class 1b, alpha subunit

 Score = 50.1 bits (120), Expect = 6e-06
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YL  +H DI  FL+ KK    E+ R + L  G+ IPD+F    + +    L  
Sbjct: 237 RQGAGAVYLNAFHPDILRFLDTKKENADEKIRIKTLSLGVVIPDKFFELAKENKDMYLFS 296

Query: 61  PNACRGLSDSWGEKFDDL 78
           P     +   +G  FDD+
Sbjct: 297 PYD---VEREYGVPFDDI 311

Members of this family are NrdE, the alpha subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. Length = 698

>gnl|CDD|236069 PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 49.0 bits (117), Expect = 1e-05
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA A+YL  +H D+ +FL+ KK    E+ R   +  GL +P +F    +    + +  
Sbjct: 242 RPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFELAKEGKDFYMFA 301

Query: 61  PNACRGLSDSWGEKFDDL 78
           P+    +   +G   DD+
Sbjct: 302 PHT---VYKEYGVTLDDI 316

Length = 699

>gnl|CDD|180772 PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional

 Score = 48.3 bits (115), Expect = 2e-05
 Identities = 19/55 (34%), Positives = 28/55 (50%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           +GV GLAD    MRL +D   +R + + I   + + A  AS  +AA  G Y   +
Sbjct: 367 VGVTGLADALTMMRLRYDSPAAREMARYIASDLRHHAYAASAALAAERGAYPLCD 421

Length = 595

>gnl|CDD|180921 PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 47.4 bits (113), Expect = 4e-05
 Identities = 21/61 (34%), Positives = 29/61 (47%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YL  +H DI  FL  KK    E+ R + L  G+ +PD+F      +    L  
Sbjct: 245 RQGAGVVYLNVFHPDIIAFLSTKKENADEKVRVKTLSLGVTVPDKFYELARKNEDMYLFS 304

Query: 61  P 61
           P
Sbjct: 305 P 305

Length = 720

>gnl|CDD|233902 TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate reductase, alpha subunit

 Score = 45.8 bits (109), Expect = 9e-05
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 673 ALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSN 712
           A K +  V    L   IL +++ETG PY+L+KDA N+ + 
Sbjct: 242 ARKKIRKVSARDLMKDILRTRVETGRPYILFKDAVNKHNP 281

This model represents the alpha (large) chain of the class I ribonucleotide reductase (RNR). RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Class I RNR's generate the required radical (on tyrosine) via a "non-heme" iron cofactor which resides in the beta (small) subunit. The alpha subunit contains the catalytic and allosteric regulatory sites. The mechanism of this enzyme requires molecular oxygen. E. Coli contains two versions of this enzyme which are regulated independently (NrdAB and NrdEF, where NrdA and NrdE are the large chains ). Most organisms contain only one, but the application of the gene symbols NrdA and NrdE are somewhat arbitrary. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]. Length = 617

>gnl|CDD|236266 PRK08447, PRK08447, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 22/68 (32%), Positives = 34/68 (50%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV G A +  + ++ +   E      +I E I Y A++AS  +A   G Y  +EGS  S
Sbjct: 550 LGVMGEAQMLAEHKIAWGSKEHLEKIDEIMEQISYNAIDASSNLALEKGVYPDFEGSNWS 609

Query: 653 QGILQYDM 660
           +GI   D 
Sbjct: 610 KGIFPIDK 617

Length = 789

>gnl|CDD|236330 PRK08665, PRK08665, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 44.2 bits (105), Expect = 4e-04
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 594 GVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGS 649
           GV G AD+ IQ+ +P+D  E+  L +++ + I   A  AS E+A   GP+  YEGS
Sbjct: 350 GVMGWADMLIQLGIPYDSEEAVELAEKVMKFIQDEAHAASRELAEERGPFPNYEGS 405

Length = 752

>gnl|CDD|236179 PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 43.9 bits (104), Expect = 4e-04
 Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 54/178 (30%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSR------RVLSGE 836
           DWA L++ + +HG+ N  L A  PT S + I  +  S  P  S I  R      RV    
Sbjct: 565 DWAQLRDDVMRHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPA 624

Query: 837 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 896
             + N              DN+                      + Y+  +EI  + ++D
Sbjct: 625 PYMTN--------------DNL----------------------EYYQDAYEIGPEKIID 648

Query: 897 MAADRGAFIDQSQSLNIYMA------EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
             A     +DQ  SL ++        +IN A++     + W+ G+KT +YY+R +  A
Sbjct: 649 TYAAATQHVDQGLSLTLFFPDTATTRDINKAQI-----YAWRKGIKT-LYYIRLRQMA 700

Length = 714

>gnl|CDD|236378 PRK09102, PRK09102, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 43.4 bits (103), Expect = 6e-04
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 35/132 (26%)

Query: 519 MSSM---HFHGWK---LGLKTGMYYLRTKPAANAIQFTIDKTK--MANAMASKDARSQEE 570
           +SS+   ++  WK     ++  M +L      N +Q  IDK    M  A  S        
Sbjct: 302 LSSLNLEYYDEWKDTDAFIEDLMRFLD-----NVLQDFIDKAPDEMERAKYS-------- 348

Query: 571 IQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGAL 630
             A +E+++             +GV G         +PF+   ++  NK+IF+ I   A 
Sbjct: 349 --AMRERSVG------------LGVMGFHSYLQSKMIPFESVMAKQWNKKIFKHIREQAD 394

Query: 631 EASCEIAARDGP 642
           +AS E+A   G 
Sbjct: 395 KASKELAKEKGE 406

Length = 601

>gnl|CDD|223287 COG0209, NrdA, Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLE 717
                +   +L+  + ++  ETG PY+++ D  NR++      
Sbjct: 301 IRKKRIKARELFDKLAEAAFETGDPYLIFVDTLNRRNPNAEGG 343

Length = 651

>gnl|CDD|236069 PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 33/164 (20%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L++ + ++G+ ++  +A  PT S + +     S  P    I  R   + E      
Sbjct: 556 DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE----TF 611

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           + +  L    +W                            YK+ +   Q  ++D+ A   
Sbjct: 612 YPMPFLSPQTMW---------------------------YYKSAFNTDQMKLIDLIATIQ 644

Query: 903 AFIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
             IDQ  S  +Y+ +EI+  +++ ++ +    GLK+ +YY R K
Sbjct: 645 THIDQGISTILYVNSEISTRELARLYVYAHHKGLKS-LYYTRNK 687

Length = 699

>gnl|CDD|153083 cd00576, RNR_PFL, Ribonucleotide reductase and Pyruvate formate lyase

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 243 NLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGI 302
           NLA I         D       L+++A +  + L+ +ID +   +          R +G+
Sbjct: 206 NLARIMEKAINGSMDVVLEE--LEELAFLAVRALDCVIDSHDERIPTIELGGDERRTVGL 263

Query: 303 GVQGLADLFIQMRLPFDCN-ESRLLNKQIFETIYYGALEAS 342
           G+ G+ADL I++ L    + E+  L  ++ + +    ++A+
Sbjct: 264 GIAGVADLLIKLGLEKVGDPEADDLAAELVDQLKKHLVKAT 304

Ribonucleotide reductase (RNR) and pyruvate formate lyase (PFL) are believed to have diverged from a common ancestor. They have a structurally similar ten-stranded alpha-beta barrel domain that hosts the active site, and are radical enzymes. RNRs are found in all organisms and provide the only mechanism by which nucleotides are converted to deoxynucleotides. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs use a diiron-tyrosyl radical while Class II RNRs use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. PFL, an essential enzyme in anaerobic bacteria, catalyzes the conversion of pyruvate and CoA to acteylCoA and formate in a mechanism that uses a glycyl radical. Length = 401

>gnl|CDD|181700 PRK09209, PRK09209, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 689 ILDSQIETGTPYMLYKDACNRK 710
           I+ SQ+ETG P+M Y+D  NR 
Sbjct: 421 IMVSQLETGNPFMFYRDEVNRM 442

Length = 761

>gnl|CDD|236330 PRK08665, PRK08665, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 8/98 (8%)

Query: 796 VRNSLL--IAPMPTASTAQILGNNES-FEPYTSNIYSRRVLSGEFQV-VNHHLLRDLVEL 851
           +RN+ +  IAP  T S   I+    S  EP  +  ++R V+ GE  V VN        E 
Sbjct: 415 MRNATVTTIAPTGTIS---IIAGCSSGIEPLFALSFTRNVMDGERLVEVNPVFEAAAKEE 471

Query: 852 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI 889
           G + + + ++ I   GSIQDI+ +P+ ++ ++ T  +I
Sbjct: 472 GFYSEELMEK-IAEKGSIQDIDEVPEDVRRVFVTAHDI 508

Length = 752

>gnl|CDD|236152 PRK08115, PRK08115, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 41.0 bits (96), Expect = 0.004
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 787 LKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLR 846
           ++E I K+G+RNS L+   PT ST  ++G +   EPY S  Y R    G+F  V   +++
Sbjct: 631 IREDILKYGIRNSHLLTVAPTGSTGTMVGVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQ 690

Query: 847 D 847
           +
Sbjct: 691 E 691

Length = 858

>gnl|CDD|235952 PRK07187, PRK07187, ribonucleotide-diphosphate reductase subunit alpha; Validated

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 19/44 (43%), Positives = 25/44 (56%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPD 44
           R GA A+YL   H D+  FL+ K+    E+ R + L  GL IPD
Sbjct: 243 RQGAGAVYLHAHHPDVLTFLDTKRENADEKIRIKSLSLGLVIPD 286

Length = 721

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	998
KOG1112|consensus	796		100.0
PLN02437	813	ribonucleoside--diphosphate reductase large subuni	100.0
PRK07207	965	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK06539	822	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK12365	1046	ribonucleotide-diphosphate reductase subunit alpha	100.0
TIGR02506	617	NrdE_NrdA ribonucleoside-diphosphate reductase, al	100.0
PF02867	538	Ribonuc_red_lgC: Ribonucleotide reductase, barrel	100.0
PRK08447	789	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK09209	761	ribonucleotide-diphosphate reductase subunit alpha	100.0
PHA02572	753	nrdA ribonucleoside-diphosphate reductase subunit	100.0
PRK09103	758	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK07088	764	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK12364	842	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK07632	699	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK08115	858	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK07187	721	ribonucleotide-diphosphate reductase subunit alpha	100.0
TIGR02504	586	NrdJ_Z ribonucleoside-diphosphate reductase, adeno	100.0
PRK06556	953	vitamin B12-dependent ribonucleotide reductase; Va	100.0
PRK07306	720	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK09102	601	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK08188	714	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK08665	752	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK06406	771	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK07562	1220	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK06948	595	ribonucleotide reductase-like protein; Provisional	100.0
cd02888	464	RNR_II_dimer Class II ribonucleotide reductase, di	100.0
TIGR02510	571	NrdE-prime ribonucleoside-diphosphate reductase, a	100.0
PRK08332	1740	ribonucleotide-diphosphate reductase subunit alpha	100.0
cd01679	460	RNR_I Class I ribonucleotide reductase. Ribonucleo	100.0
COG0209	651	NrdA Ribonucleotide reductase, alpha subunit [Nucl	100.0
KOG1112|consensus	796		100.0
PLN02437	813	ribonucleoside--diphosphate reductase large subuni	100.0
PRK07207	965	ribonucleotide-diphosphate reductase subunit alpha	100.0
cd01676	658	RNR_II_monomer Class II ribonucleotide reductase,	100.0
PRK12365	1046	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK06539	822	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK07562	1220	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK08332	1740	ribonucleotide-diphosphate reductase subunit alpha	100.0
TIGR02506	617	NrdE_NrdA ribonucleoside-diphosphate reductase, al	100.0
PF02867	538	Ribonuc_red_lgC: Ribonucleotide reductase, barrel	100.0
PRK06556	953	vitamin B12-dependent ribonucleotide reductase; Va	100.0
PRK06406	771	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK08115	858	ribonucleotide-diphosphate reductase subunit alpha	100.0
TIGR02510	571	NrdE-prime ribonucleoside-diphosphate reductase, a	100.0
PRK08665	752	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK09102	601	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK08447	789	ribonucleotide-diphosphate reductase subunit alpha	100.0
TIGR02504	586	NrdJ_Z ribonucleoside-diphosphate reductase, adeno	100.0
TIGR02505	713	RTPR ribonucleoside-triphosphate reductase, adenos	100.0
PRK09103	758	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK07632	699	ribonucleotide-diphosphate reductase subunit alpha	100.0
PHA02572	753	nrdA ribonucleoside-diphosphate reductase subunit	100.0
PRK09209	761	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK07187	721	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK07088	764	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK08188	714	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK07306	720	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK12364	842	ribonucleotide-diphosphate reductase subunit alpha	100.0
PRK06948	595	ribonucleotide reductase-like protein; Provisional	100.0
cd02888	464	RNR_II_dimer Class II ribonucleotide reductase, di	100.0
COG0209	651	NrdA Ribonucleotide reductase, alpha subunit [Nucl	100.0
cd01679	460	RNR_I Class I ribonucleotide reductase. Ribonucleo	100.0
cd00576	401	RNR_PFL Ribonucleotide reductase and Pyruvate form	100.0
cd01676	658	RNR_II_monomer Class II ribonucleotide reductase,	100.0
TIGR02505	713	RTPR ribonucleoside-triphosphate reductase, adenos	99.9
cd00576	401	RNR_PFL Ribonucleotide reductase and Pyruvate form	99.67
cd01675	555	RNR_III Class III ribonucleotide reductase. Ribonu	97.57
TIGR02487	579	NrdD anaerobic ribonucleoside-triphosphate reducta	97.26
PRK10977	509	hypothetical protein; Provisional	97.26
PRK08270	656	anaerobic ribonucleoside triphosphate reductase; P	97.01
PRK07111	735	anaerobic ribonucleoside triphosphate reductase; P	96.8
PRK09263	711	anaerobic ribonucleoside triphosphate reductase; P	96.73
PRK14704	618	anaerobic ribonucleoside triphosphate reductase; P	96.62
PRK08271	623	anaerobic ribonucleoside triphosphate reductase; P	96.03
PF13597	546	NRDD: Anaerobic ribonucleoside-triphosphate reduct	95.88
PRK08579	625	anaerobic ribonucleoside triphosphate reductase; P	95.74
TIGR02827	586	RNR_anaer_Bdell anaerobic ribonucleoside-triphosph	93.33
PF11230	487	DUF3029: Protein of unknown function (DUF3029); In	89.01
PRK14704	618	anaerobic ribonucleoside triphosphate reductase; P	85.37
cd01675	555	RNR_III Class III ribonucleotide reductase. Ribonu	80.49

>KOG1112|consensus

Probab=100.00  E-value=3.8e-133  Score=1098.36  Aligned_cols=506  Identities=74%  Similarity=1.235  Sum_probs=488.4

Q ss_pred             cccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceeeeCCCCCCCcchhhchhHHHH
Q psy1689          89 YFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDL  168 (998)
Q Consensus        89 g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~Lf~P~~~~~L~~~yg~~F~~~  168 (998)
                      ++|+||+++||++||.||++||++|+++|+++.|++++|+++||||+||+||++|++|+||+|.+||+|.++||+||+.+
T Consensus       291 ~kRpGafAiyLEPWHadifdFlelrKn~G~Ee~RARdlF~ALWipDLFMkRVe~n~~WslfcP~~apGL~dvwG~EFe~L  370 (796)
T KOG1112|consen  291 NKRPGAFAIYLEPWHADIFDFLELRKNTGKEEFRARDLFYALWIPDLFMKRVENNGEWSLFCPNEAPGLDDVWGDEFEAL  370 (796)
T ss_pred             CCCCceeEEEechhHHHHHHHHHHHhccChHHHHHHHHHHHHhhhHHHHHHHhcCCceEEECCccCCchHHHHhHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCccceecccCCCCcceeeecccc
Q psy1689         169 YKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIA  248 (998)
Q Consensus       169 Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~EI~l~~~~~~~~~CNL~SIN  248 (998)
                      |.+||++|+..|+|+|+.||..|++++.+||.||++|+|+|||.+|+.++|+|++||||+||+.|++|+|++||||+||.
T Consensus       371 Y~kYEkegr~~k~vkAqklW~aIleaQ~ETGtPym~yKDacNRkSNQqnlGtIk~SNLCtEIvEYsspdE~aVCNLASia  450 (796)
T KOG1112|consen  371 YTKYEKEGRGKKTVKAQKLWYAILEAQVETGTPYMLYKDACNRKSNQQNLGTIKSSNLCTEIVEYSSPDETAVCNLASIA  450 (796)
T ss_pred             HHHHHHhccccceeeHHHHHHHHHHHhhccCCceEEehhhhcccccccccceeeecchhHHHhhccCCcceeeeehHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHH
Q psy1689         249 LNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK  328 (998)
Q Consensus       249 L~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~  328 (998)
                      |+.||.. .+.|||+.|++++++.++.|+.+||.|+||+|+++++|.++|||||||+||||+|+.|++||+|+||+.|+.
T Consensus       451 Lp~fv~~-~~~ydF~kl~ev~kvvt~NLNkiID~NYYPv~eAr~SNmrhRPigiGVQGlAD~f~llr~pfeS~eA~~LN~  529 (796)
T KOG1112|consen  451 LPMFVTP-EKTYDFEKLAEVTKVVTRNLNKIIDVNYYPVEEARRSNMRHRPIGIGVQGLADAFILLRLPFESAEARLLNK  529 (796)
T ss_pred             hhhhccc-cccccHHHHHHHHHHHHhhhhheeccCcccchHhhhcccccCCccccchhHHHHHHHHcCCCCChHHHHHHH
Confidence            9999986 578999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccCCccchhh
Q psy1689         329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQ  408 (998)
Q Consensus       329 ~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~  408 (998)
                      +|||+|||+|++||+|||+..|||+.|++|+.++|+||||.|++.|+..|||+.||++|.+||+|||.++|.|||+|+|+
T Consensus       530 qIFEtiYy~aleAScelA~~eGpyetyeGSPvSkGilq~dmw~~~pt~~wDW~~Lre~I~khGvRNSLl~ApMPTAsTsQ  609 (796)
T KOG1112|consen  530 QIFETIYYAALEASCELAQKEGPYETYEGSPVSKGILQFDMWNVKPTDLWDWATLREKIAKHGVRNSLLVAPMPTASTSQ  609 (796)
T ss_pred             HHHHHHHHHHHHHhHHHHHhcCCCcccCCCcccccccchhhcCCCCCcccCHHHHHHHHHHhccccceeeccCCCcchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhcccccCCChH
Q psy1689         409 ILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQK  488 (998)
Q Consensus       409 i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~  488 (998)
                      |+|..++|||+.+|+|.|++.+|+|.+||++|+++|.++|+|++++++.++.++||+|++|.+|+++|++|+|+|||+|+
T Consensus       610 IlGnNE~fEP~tsNiYsRRvlsGeFqiVN~hll~DLv~~glW~~~mKn~lI~~nGSIq~i~~iP~~lk~lYkTvWEIsqk  689 (796)
T KOG1112|consen  610 ILGNNECFEPYTSNIYSRRVLSGEFQIVNPHLLKDLVELGLWDDEMKNKLIANNGSIQNIPEIPQDLKELYKTVWEISQK  689 (796)
T ss_pred             hhcCccccCcccccceeeeecccceEEEcHHHHHHHHHhccCCHHHHHHHHhcCCccccCccCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCccccccceeEeecCCCHHHHHHHHHHHHHcCCceEEEEeeccccccccchhhhHhHhhhhcccccchhh
Q psy1689         489 TVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ  568 (998)
Q Consensus       489 ~~I~m~a~~Q~~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (998)
                      .+|+|+|+|+.|||||||+||++..++..++.++|||+||+||||+|||+|+++++.+++||+|++.+++++...+..+.
T Consensus       690 tvi~mAAdRg~~iDQSqSlNi~~~~P~y~klTSmHFYgwkkGLKTGMYYLRt~~a~~aIqFTvdk~~~~~~~~~~~~~~~  769 (796)
T KOG1112|consen  690 TVIDMAADRGAFIDQSQSLNIHLAKPNYGKLTSMHFYGWKKGLKTGMYYLRTRPAANAIQFTVDKKVLNEKAEVAEGDSK  769 (796)
T ss_pred             HHHHHHhhcccccccccceeeeecCCCccccceeEeeehhcccccceeEEeccccccceEEEecHHHhcccccccccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999887765554333321


Q ss_pred             HHHHHhHHHHHHhhhhccCCcCccccccc
Q psy1689         569 EEIQADQEQAMAAMICRRDNKEDCIGVQG  597 (998)
Q Consensus       569 ~~~~~~~~~~~~~~~c~~~~~~~g~g~~G  597 (998)
                        ++++...+++.|+|+++|++-|+-|.|
T Consensus       770 --~~e~~~~~~~~~~c~~~n~e~C~mCss  796 (796)
T KOG1112|consen  770 --EEEEDEYNTAVMVCSLDNPEACLMCSS  796 (796)
T ss_pred             --hhHHhhhhhhhhhhccCCchHhhhcCC
Confidence              123444577889999999999988765

>PLN02437 ribonucleoside--diphosphate reductase large subunit

Probab=100.00  E-value=8.9e-126  Score=1153.75  Aligned_cols=524  Identities=64%  Similarity=1.080  Sum_probs=489.1

Q ss_pred             hhhhhHHHHHHHHh-hhccc-cccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCcee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLV-YFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWS  147 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~-g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~  147 (998)
                      +....|.++|+... ...++ |+|+||+|+||++|||||++||++|+++|++++|++++|+||||||+||++|++|++|+
T Consensus       270 sG~vpflk~~n~~~~~v~QgGg~RrGA~~vyL~~wH~DI~eFL~lK~~~g~e~~r~~~l~~sv~ipDlFM~rv~~d~~W~  349 (813)
T PLN02437        270 NGIVPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWIPDLFMERVQSNGDWS  349 (813)
T ss_pred             CCchhHHHHHHHHHHHHHcCCCccccceeEEEeCCCccHHHHHHHhcccCcHhHHHHhcceeEEECHHHHHHHHcCCCEE
Confidence            34568888888876 34456 58999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCc
Q psy1689         148 LMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLC  227 (998)
Q Consensus       148 Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC  227 (998)
                      ||+|+++++|.++||++|+++|++++.+|+.+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++||||
T Consensus       350 Lf~P~e~~~L~~~yG~eF~~~Y~~~e~~g~~~~~V~AreLw~~I~~s~~eTG~P~i~fkD~~N~~~~~~~~G~I~~SNlC  429 (813)
T PLN02437        350 LFCPNEAPGLADCWGEEFERLYTKYEREGKAKKVVQAQQLWFAILESQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLC  429 (813)
T ss_pred             EECCcccchHHHhhchHHHHHHHHHHhcCceeEEEEHHHHHHHHHHHHHHhCCCeEEEhHHHhhcCCCccCCceEeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceecccCCCCcceeeecccccccccCCC------------------CCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHH
Q psy1689         228 TEIVEYTSKDEVAVCNLASIALNMYINPA------------------DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEE  289 (998)
Q Consensus       228 ~EI~l~~~~~~~~~CNL~SINL~~~v~~~------------------~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e  289 (998)
                      +||+||++++++++|||+||||++||.++                  +..||++.|+++|+++||+||+|||.+.||+|+
T Consensus       430 tEI~~~~~~~e~avCNL~SINL~~~v~~~~~~~~~~~~~~~~~~~~~~~~fD~~~L~~~v~~avr~LDnvID~n~yP~~~  509 (813)
T PLN02437        430 TEIIEYTSPTETAVCNLASIALPRFVREKGVPLESHPSKLVGSLGSKNRYFDFEKLAEVTAVVTRNLNKIIDVNYYPVET  509 (813)
T ss_pred             ccccccCCccceeeeecchhhHHHHHhcccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence            99999999999999999999999998532                  236999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccc
Q psy1689         290 ARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDM  369 (998)
Q Consensus       290 ~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~  369 (998)
                      ++++++++|+||||||||||+|+++|++|+|+||++++++|||+|+++|++||++||+|+|+||.|++|+|++|.|+++.
T Consensus       510 a~~~n~~~R~IGLGv~Glad~L~~lgi~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~fp~f~~S~~~~G~~~~~~  589 (813)
T PLN02437        510 ARRSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASSELAAREGPYETYAGSPVSKGILQPDM  589 (813)
T ss_pred             HHHHhhcCCCccccHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcchhhhccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCC
Q psy1689         370 WGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL  449 (998)
Q Consensus       370 ~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~  449 (998)
                      |+..+...++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|.++|++|+++|+++|+
T Consensus       590 ~~~~~~~~~dW~~Lr~~i~~~GlRNs~l~AiaPT~StS~i~g~s~giEP~~sn~y~R~~~~Ge~~~vn~~l~~~l~~~g~  669 (813)
T PLN02437        590 WGVTPSGRWDWAALREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGL  669 (813)
T ss_pred             ccCCCchhhhHHHHHHHHHHhCcchhceeccCCcHHHHHHcCCCCccccccchheeEeecCceEEEECHHHHHHHHHcCC
Confidence            98877778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCCCHHHHHHHHHHHHHc
Q psy1689         450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKL  529 (998)
Q Consensus       450 ~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~  529 (998)
                      |++++++.|+.++|++|++|.+|++++.+|+|||||+|+++|+|+|++|||||||||+|||+++++.++|.++|++||++
T Consensus       670 ~~~~~~~~i~~~~gsvq~~~~lp~~~~~~f~tA~ei~~~~~I~~aA~rQ~~IDQsqS~nl~l~~~t~~~i~~~~~~Awk~  749 (813)
T PLN02437        670 WTPTLKNKIIAENGSVQKIPEIPDDLKAIYKTVWEIKQRTLVDMAADRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSK  749 (813)
T ss_pred             ChHHHHHHHHhhCCCccCCCCCCHHHHHHhhhHHhCCHHHHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999988999999999999999


Q ss_pred             CCceEEEEeeccccccccchhhhHhHhhhhcccccchhhHHHHHhHHHHHHhhhhccCCcCccccccc
Q psy1689         530 GLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQG  597 (998)
Q Consensus       530 GlKt~~yY~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~g~~G  597 (998)
                      ||||+|||||+++++++++||+|++.+...+...++.. +   .+........+|+++|++.|..|+|
T Consensus       750 GLKt~~YY~R~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~c~~c~~  813 (813)
T PLN02437        750 GLKTGMYYLRSRAAADAIKFTVDTASLKPSATGVAAPE-E---EDVETKMAQMVCSLDNREECLACGS  813 (813)
T ss_pred             CCCeeEEEEeccccccceEEecchhhhccccccccCcc-c---cccchhhhhccCCCCCccccccccC
Confidence            99999999999999999999999766553321111110 1   0112233458899999999998876

>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=2e-122  Score=1140.14  Aligned_cols=520  Identities=39%  Similarity=0.662  Sum_probs=479.9

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++|+... ...++|+|+||+|+||++|||||++||++|+++|++.+|++++|+||||||+||++|++|++|+|
T Consensus       425 sGvvpflk~~n~~~~~v~QgG~R~GA~~vyL~~wH~DI~eFL~lk~~~gde~~r~~~l~~av~ipD~FM~rv~~d~~w~L  504 (965)
T PRK07207        425 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEDGEWTL  504 (965)
T ss_pred             CChhHHHHHHHHHHHHHHcCCcCccceeeEecCCCccHHHHHHHhhccCchhhHhhcCchhhccCHHHHHHHHcCCCEEE
Confidence            34578888888875 45677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCcchhhchhHHHHHHHHHHcC-----cceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceee
Q psy1689         149 MCPNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKC  223 (998)
Q Consensus       149 f~P~~~~~L~~~yg~~F~~~Y~~~e~~g-----~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~  223 (998)
                      |+|+++++|.++||++|+++|++|++.+     +..++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++
T Consensus       505 f~P~~~~~L~~~yG~~f~~~Y~~~e~~~~~g~~~~~~~v~Ar~Lw~~I~~~~~eTG~P~i~fkD~~N~~~~~~~~g~I~~  584 (965)
T PRK07207        505 FSPSEVPDLHDLFGKAFEEAYTAYEAKAARGEIKLFKKIPAVDLWRKMLSMLFETGHPWITFKDPCNLRSPQQHVGVVHS  584 (965)
T ss_pred             ecCcccccHHhhhhhHHHHHHHHHHHhcccCCcceeeEeeHHHHHHHHHHHHHHhCCCeeehhHHHHhcCCcccCCeEee
Confidence            9999999999999999999999999754     35799999999999999999999999999999999999999999999


Q ss_pred             cCCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccc
Q psy1689         224 SNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIG  303 (998)
Q Consensus       224 sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLG  303 (998)
                      ||||+||+|+++++++++||||||||++||.+ +..||++.|+++|+++||+||+|||++.||+|+++++|+++|+||||
T Consensus       585 SNlCtEI~l~~~~~e~avCNLgSINL~~~v~~-~~~~D~~~l~~~v~~avr~LDnVID~n~yp~~~a~~~n~~~R~IGLG  663 (965)
T PRK07207        585 SNLCTEITLNTSDDEIAVCNLGSVNLVAHIKD-GAKLDHEKLKRTVSTAMRMLDNVIDINYYAVPKARNSNLRHRPVGLG  663 (965)
T ss_pred             cCCCcceeecCCCcceeeeeccceeHHHHhhC-CCcCCHHHHHHHHHHHHHhccceeeCCCCcHHHHHHHhhccCCcccc
Confidence            99999999999999999999999999999974 23699999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCC----------
Q psy1689         304 VQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT----------  373 (998)
Q Consensus       304 v~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~----------  373 (998)
                      +|||||+|+++|++|+|+||++|+++|||.|+|+|++||++||+|+|+||.|++|+|++|+|++|.|...          
T Consensus       664 vmGlad~L~~lgi~Y~S~eA~~l~~~i~e~i~y~A~~aS~eLA~E~G~~~~f~gS~~~~g~~~~d~~~~~~~~r~~~~~~  743 (965)
T PRK07207        664 IMGFQDALYLLRIPYASDEAVEFADRSMEAVSYYAIWASTELAEERGRYSSYEGSLWSRGILPIDSLKLLAEARGGYLEV  743 (965)
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhcCccchhhhhhhhhhhcccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999887632          


Q ss_pred             -CCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcH
Q psy1689         374 -PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDD  452 (998)
Q Consensus       374 -p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~  452 (998)
                       +...++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|.++|++|.++|+++|+|++
T Consensus       744 ~~~~~~dW~~Lr~~i~~~G~RNs~l~AiAPT~S~S~i~g~s~giEP~~s~~y~r~~~~g~f~~vn~~l~~~l~~~~~~~~  823 (965)
T PRK07207        744 DRSSTLDWDALRARIKKHGMRNSNCMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVRDLKARGLWDE  823 (965)
T ss_pred             cccchhhHHHHHHHHHHhCccccceeccCChHHHHHHhCCCCccCcCchhhheeeccCCceEEeCHHHHHHHHHcCCChH
Confidence             2346799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCCCHHHHHHHHHHHHHcCCc
Q psy1689         453 NMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLK  532 (998)
Q Consensus       453 ~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~GlK  532 (998)
                      ++++.+.+++||+|+++.+|++++++|+|||||+|++||+|+|++|||||||||+|||+++++.++|.++|++||++|||
T Consensus       824 ~~~~~i~~~~Gsvq~i~~ip~~~k~~f~tA~ei~~~~~I~~~A~rQ~~IDqsqS~nl~~~~~t~~~l~~~y~~Aw~~GlK  903 (965)
T PRK07207        824 VMVNDLKYFDGSLQRIDRIPADLKALYATAFEVDPRWLVEAASRRQKWIDQAQSLNLYMAGASGKKLDETYKLAWLRGLK  903 (965)
T ss_pred             HHHHHHHhcCCCccCCCCCChhHHhhcccCccCCHHHHHHHHHHHcCcchhhhcCCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             eEEEEeeccccccccchhhhHhHhhhhcccccch----hhHHHHHhHHHHHHhhhhccCCcCcccccc
Q psy1689         533 TGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR----SQEEIQADQEQAMAAMICRRDNKEDCIGVQ  596 (998)
Q Consensus       533 t~~yY~R~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~c~~~~~~~g~g~~  596 (998)
                      | +||||+++++++++||+++.++.+.++.+..+    +...    ......+.+|+|+++. |-.|+
T Consensus       904 t-~YY~Rs~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~  965 (965)
T PRK07207        904 T-TYYLRTLGATHVEKSTVNTGALNAVSSGGGGAGGAAAAAA----APPAADPKACSIDDPD-CEACQ  965 (965)
T ss_pred             e-EEEEecccccchhhhccccccccccCCCcccccccccccc----CCCCCCCCcccCCCCC-CcccC
Confidence            9 89999999999999999976655543322111    0000    0012235789998875 76664

>PRK06539 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=1.9e-120  Score=1106.31  Aligned_cols=484  Identities=34%  Similarity=0.607  Sum_probs=460.5

Q ss_pred             hhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceeee
Q psy1689          71 WGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLM  149 (998)
Q Consensus        71 ~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~Lf  149 (998)
                      ....|.++|+... ...++|+|+||+|+||++|||||++||++|+++|++.+|++++|+||||||+||++|++|++|+||
T Consensus       279 G~vpflk~~d~~~~~v~QgG~RrGA~~~yL~~wH~DI~eFL~lk~n~g~e~~r~~~~n~sv~i~D~FM~~V~~d~~w~L~  358 (822)
T PRK06539        279 GPIPFMHTIDSVLRAVSRGGKKFGALCFYMENWHMDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDEDWYLF  358 (822)
T ss_pred             ChhhHHHHHHHHHHHHHhCCCCcCceEEEecCCCcCHHHHHHHhhcCCchhhhhccCceeeeeCHHHHHHHHcCCCeEEE
Confidence            3468888888876 456778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcchhhchhHHHHHHHHHHcC-----cceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeec
Q psy1689         150 CPNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCS  224 (998)
Q Consensus       150 ~P~~~~~L~~~yg~~F~~~Y~~~e~~g-----~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~s  224 (998)
                      +|+++++|.++||++|+++|.+|++.+     +..++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++|
T Consensus       359 ~P~~~~~l~~~yG~~f~~~Y~~~e~~~~~g~~~~~~~V~Ar~Lw~~I~~~~~eTG~P~i~fkD~~N~~~~~~~~g~I~~S  438 (822)
T PRK06539        359 DPLETPDLNELYGKAFSKRYAQYVEQAEAGRIRMFKRITAREQFRAILMSLQTTSHPWLTWKDTINNRALNNNTGTIHLS  438 (822)
T ss_pred             CCcccccHHHHhCcHHHHHHHHHHHhccccccceeeEEeHHHHHHHHHHHHHHhCCCceEehhhHhhcCCCccCCcEeec
Confidence            999999999999999999999999753     357999999999999999999999999999999999999999999999


Q ss_pred             CCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCcccc
Q psy1689         225 NLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGV  304 (998)
Q Consensus       225 NpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv  304 (998)
                      |||+||+|+++++++++|||+||||++||.+  +.|||+.|+++|+++||+||+|||.+.||+|+++++++++|+|||||
T Consensus       439 NlC~EI~l~~~~~e~~vCNL~SINL~~fv~~--~~fD~~~l~~~v~~avR~LDnVID~n~yP~~~a~~~n~~~R~IGLGv  516 (822)
T PRK06539        439 NLCTEICLPQDRDNVSVCNLASINLSRHLAD--GELDWAQLEESTRLAVRQLDNLIDITASSVKEADFSNQQNRAIGLGV  516 (822)
T ss_pred             CCcceeeccCCccccceeeeheeEHHHHhcc--ccCcHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHhcccccccc
Confidence            9999999999999999999999999999964  57999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCC-----------
Q psy1689         305 QGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT-----------  373 (998)
Q Consensus       305 ~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~-----------  373 (998)
                      |||||+|+++|++|+|+||++++++|||.|+++|+++|++||+|+|+||.|++|+|++|.|+++.|...           
T Consensus       517 mGlad~L~~lgi~YdS~eA~~l~~~i~e~i~~~A~~aS~eLAkE~G~fp~f~~S~~~~G~l~~d~~~~~~~~~~~~~~~~  596 (822)
T PRK06539        517 MGFTDMVERLGYSYESEEAYDLIDRIMEHISYAAIDESADLAAERGAYPNFEGSRWSRGMVPVDSIALLEADRGVPVDVN  596 (822)
T ss_pred             hhHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhhhhcchhhhhhhhhhcccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999876532           


Q ss_pred             CCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHH
Q psy1689         374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDN  453 (998)
Q Consensus       374 p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~  453 (998)
                      +...++|+.|++++ ++|+|||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|.++|++|+++|+++|+| ++
T Consensus       597 ~~~~~dW~~L~~~i-~~GlRNs~l~AiAPTgS~S~i~g~S~gIEP~~s~~y~R~~~~G~f~~vn~~l~~~L~~~g~~-~~  674 (822)
T PRK06539        597 RTTRLDWDALRAKV-RGGMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGKFLEVNRNLVADLKELGLW-ET  674 (822)
T ss_pred             ccchhcHHHHHHHH-HhCeeccceeecCCchhHHHhcCCCCCcCcchhhhheeecccceEEEeCHHHHHHHHHcCCC-HH
Confidence            22367999999998 56999999999999999999999999999999999999999999999999999999999999 57


Q ss_pred             HHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCCCHHHHHHHHHHHHHcCCce
Q psy1689         454 MKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKT  533 (998)
Q Consensus       454 ~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~GlKt  533 (998)
                      +++.|+..+|++|+++.+|++++++|+|||||+|++||+|+|++|+|||||||+|||+++++.++|.++|++||++||||
T Consensus       675 ~~~~i~~~~Gsvq~i~~iP~~~~~~f~tA~eI~~~~~I~maA~rQ~~IDqsiS~nl~l~~~t~~~v~~iy~~Aw~~GlKT  754 (822)
T PRK06539        675 VREEILRSQGDIQEIAAIPDEIKALYRTSFQLSPYAFLEVAARAQKWVDQAISRNMYLESRDIGDMMDIYTAAWEMGVKT  754 (822)
T ss_pred             HHHHHHHhCCCccCcccCChHHHhhcCcHhhCCHHHHHHHHHHHCccchhhcCCeeecCCCCHHHHHHHHHHHHHcCCCe
Confidence            88888889999999999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             EEEEeeccccccccchhhhHhHhhhh
Q psy1689         534 GMYYLRTKPAANAIQFTIDKTKMANA  559 (998)
Q Consensus       534 ~~yY~R~~~~~~~~~~~~~~~~~~~~  559 (998)
                       |||+|+++++++++||+|+++..+.
T Consensus       755 -~YYlrt~~~~~~~~~t~~~~~~~~~  779 (822)
T PRK06539        755 -TYYLHMKPRHTAEQSTVKVNKSAER  779 (822)
T ss_pred             -EEeeccchhhhhhhhccccchhccc
Confidence             9999999999999999998876653

>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional

Probab=100.00  E-value=2.7e-119  Score=1122.95  Aligned_cols=483  Identities=38%  Similarity=0.656  Sum_probs=462.8

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++|+... ...++|+|+||+|+||++|||||++||++|+++|++.+|++++|+||||||+||++|++|++|+|
T Consensus       508 sG~vpflk~~n~~~~~v~QgG~R~GA~~~yL~~wH~DI~eFL~lk~~~g~e~~r~~~l~~~v~ipD~FM~~v~~~~~w~L  587 (1046)
T PRK12365        508 QGVIPFIKVANDTAVAVNQGGKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLQQKGTWTL  587 (1046)
T ss_pred             CChHhHHHHHHHHHHHHHhCCcccCceeEEEeCCCccHHHHHHHhhhcccHHHHhhccchhhccCHHHHHHHHcCCCeEE
Confidence            34568888888875 45677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCcchhhchhHHHHHHHHHHc---C--cceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceee
Q psy1689         149 MCPNTCRGLSDSWGEKFDDLYKKYEAE---G--KFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKC  223 (998)
Q Consensus       149 f~P~~~~~L~~~yg~~F~~~Y~~~e~~---g--~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~  223 (998)
                      |+|+++++|.++||++|+++|++|++.   |  +..++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++
T Consensus       588 f~P~~~~~l~~~yG~~f~~~Y~~ye~~~~~g~~~~~~~v~Ar~Lw~~I~~~~~eTG~P~i~f~D~~N~~~~~~~~G~I~~  667 (1046)
T PRK12365        588 FSPDDVPGLHEAYGEEFEKLYEEYERKVDTGEIRLYKKVEAEDLWRKMLSMLYETGHPWMTFKDPSNIRSAQDHKGVVRC  667 (1046)
T ss_pred             ECccccccHHHHhchHHHHHHHHHHHhhhcCCcceeeEEeHHHHHHHHHHHHHHhCCCeEEehhhhhhcCCCCcCCeeEe
Confidence            999999999999999999999999875   5  35699999999999999999999999999999999999999999999


Q ss_pred             cCCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccc
Q psy1689         224 SNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIG  303 (998)
Q Consensus       224 sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLG  303 (998)
                      ||||+||+||++++++++||||||||++|+..  +.||++.|+++|+++||+||+|||++.||+|+++++|+++|+||||
T Consensus       668 SNlC~Ei~l~~~~~e~~vCNL~SiNL~~~v~~--~~~D~~~l~~~v~~avr~LDnVID~n~yP~~~a~~~n~~~R~IGLG  745 (1046)
T PRK12365        668 SNLCTEILLNCSETETAVCNLGSINLVEHIVN--DGLDEEKLSETISIAIRILDNVIDINFYPTKEAKEANLAHRAIGLG  745 (1046)
T ss_pred             cCCCcceeecccCCcCceeecchhhHHHhccc--ccCCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHhcCCcccc
Confidence            99999999999999999999999999999963  4799999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCC----------
Q psy1689         304 VQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT----------  373 (998)
Q Consensus       304 v~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~----------  373 (998)
                      +|||||+|+++|++|+|+||++|+++|||.|+|+|++||++||+|+|+||.|++|+|++|+|+++.|...          
T Consensus       746 vmGlad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~e~G~y~~f~~S~~~~g~l~~d~~~~~~~~~~~~~~~  825 (1046)
T PRK12365        746 VMGFQDALYKLNISYASQEAVEFADYSSELIAYYAILASSLLAKERGTYSSYKGSKWDRGYLPIDTIELLKEYRGEANLL  825 (1046)
T ss_pred             hhhHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhhhhcchhhhhhhhhhhcccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999877531          


Q ss_pred             --CCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCc
Q psy1689         374 --PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWD  451 (998)
Q Consensus       374 --p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~  451 (998)
                        +...++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|.++|++|+++|+++|+|+
T Consensus       826 ~~~~~~~~W~~Lr~~i~~~GlRNs~l~AiaPT~S~S~i~g~s~giEP~~s~~y~r~~~~G~~~~~n~~l~~~l~~~~~~~  905 (1046)
T PRK12365        826 MDTSSRKDWEPVRSLIKEYGMRNSQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKKLGIWD  905 (1046)
T ss_pred             ccccchhhHHHHHHHHHHhCcchhcceeeCCCchHHHHhCCCCCcccchhhhheeeccCCeEEEecHHHHHHHHHcCCCh
Confidence              234679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCCCHHHHHHHHHHHHHcCC
Q psy1689         452 DNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGL  531 (998)
Q Consensus       452 ~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~Gl  531 (998)
                      +++++.+.+++||||+++.+|++++.+|+|||||+|++||+|+|++|+|||||||+|||+++++.++|.++|++||++||
T Consensus       906 ~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~I~~~A~rQk~IDqs~S~nl~~~~~~~~~l~~~y~~Aw~~Gl  985 (1046)
T PRK12365        906 ADMLDDLKYFDGSLLEIERIPDHLKKIFLTAFEIEPEWIIECASRRQKWIDMGQSLNLYLAEPDGKKLSNMYLTAWKKGL  985 (1046)
T ss_pred             HHHHHHHHHhcCCcccccCCchHHHhhcCcHHhCCHHHHHHHHHHHcCccchhhcCCcCCCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999998889999999999999999


Q ss_pred             ceEEEEeeccccccccchhhhHhH
Q psy1689         532 KTGMYYLRTKPAANAIQFTIDKTK  555 (998)
Q Consensus       532 Kt~~yY~R~~~~~~~~~~~~~~~~  555 (998)
                      || |||||+++++++++||++..+
T Consensus       986 Kt-~YY~Rt~~a~~~~~~t~~~~~ 1008 (1046)
T PRK12365        986 KT-TYYLRSSAATSVEKSFVDINK 1008 (1046)
T ss_pred             Ce-EEEeeccccchhhhhcccCCc
Confidence            99 899999999999999999765

>TIGR02506 NrdE_NrdA ribonucleoside-diphosphate reductase, alpha subunit

Probab=100.00  E-value=9.2e-111  Score=1008.95  Aligned_cols=469  Identities=45%  Similarity=0.768  Sum_probs=446.1

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++|+... ...++|+||||+|+||++|||||++||++|+++|++..|++++|+||+|||+||++|++|++|+|
T Consensus       133 sG~v~f~~~~d~~~~~v~qgg~Rrga~~~~l~~~HpDi~~Fi~~k~~~~~~~~r~~~~n~sv~i~D~Fm~~v~~d~~w~L  212 (617)
T TIGR02506       133 KGIIPFLKLLDSSVEAVNQGGKRPGAAAVYLEVWHPDIEEFLDLKKNNGDERRRCDNLFYGLWIPDLFMKRVEEDKDWYL  212 (617)
T ss_pred             CCceeHHHHHHHHHHHHhcCCccccceEEEEeCCCccHHHHHHhccccCchhhHHHhcchhhccCHHHHHHHHcCCCeEE
Confidence            44678888888875 45567899999999999999999999999999998999999999999999999999999999999


Q ss_pred             eCCCCCCCcchhhchhHHHHHHHHHHcCccee---eecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCC-CCCceeec
Q psy1689         149 MCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIR---QVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQ-NLGTIKCS  224 (998)
Q Consensus       149 f~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k---~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~-~~g~I~~s  224 (998)
                      |+|.+++.|.++||++|++.|.++++++...+   +|+||+||++|++++|+||+|||+|+|++|+++|.+ +.|+|++|
T Consensus       213 f~p~~~~~l~~~~~~~f~~~Y~~~~~~~~~~~~~~~v~Arel~~~I~~~~~~tG~Pgi~f~D~~N~~~~~~~~~~~I~~s  292 (617)
T TIGR02506       213 FSPYDVPGLYGLYGEEFEEEYERLEKDVEARKKIRKVSARDLMKDILRTRVETGRPYILFKDAVNKHNPFKTGGGAIKMS  292 (617)
T ss_pred             ECccccchhhhcccHHHHHHHHHHHhccccceeeeEeeHHHHHHHHHHHHHHHcCCceEecchhhhcCCcccCCceEEec
Confidence            99999999999999999999999998776544   699999999999999999999999999999999987 77899999


Q ss_pred             CCccceecccCCC---CcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCc
Q psy1689         225 NLCTEIVEYTSKD---EVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIG  301 (998)
Q Consensus       225 NpC~EI~l~~~~~---~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IG  301 (998)
                      |||+||+|++.++   ++++|||+||||++|+.++  .||++.|+++|+++||+||+|||.+.||++++++.+++.|+||
T Consensus       293 NpC~Ei~l~~~~~~~g~~~~CnL~SiNL~~fv~~~--~fD~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iG  370 (617)
T TIGR02506       293 NLCTEITQPTDDSHKGETAVCNLASVNLANFVMED--KFDFSELEDAVRIAVRFLDNVIDLQNYPTAPAAKSNQRRRSIG  370 (617)
T ss_pred             CcCccccccCCcccCCceeEEEcHHHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcCccc
Confidence            9999999998765   7899999999999999753  4999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCC------
Q psy1689         302 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT------  375 (998)
Q Consensus       302 LGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~------  375 (998)
                      ||+|||||+|+++|++|+|+||++++++||+.|+++|+++|++||+|+|+||.|++|+|++|.++++.|...|.      
T Consensus       371 lG~~Glad~L~~~gi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~f~~f~~s~~~~g~~~~~~~~~~~~~~~~~~  450 (617)
T TIGR02506       371 IGVMGLHDVLAKLGLPYDSEEARDLNDRIFEAIYYYAIKASAELAKEKGPFPGFSGSKYAKGWLHPDTWEKTIDPKTSMA  450 (617)
T ss_pred             cchhHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccccCcchhhhhhcccchhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988776542      


Q ss_pred             -CHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHH
Q psy1689         376 -DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNM  454 (998)
Q Consensus       376 -~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~  454 (998)
                       ...+|++|+++|++||+|||++||||||||||+|+|+|+||||+|+++|+|++.+|+|.++|++++++|+++|+|++++
T Consensus       451 ~~~~~W~~L~~~i~~~GlRNs~l~aiaPTgs~S~i~g~S~gieP~~a~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~  530 (617)
T TIGR02506       451 PTEEDWEALRERIKEYGLRNSQLTALMPTASSSQLTGVTESIEPVFSNIFTKKTLSGEFLIPNKYLMKELEELGLWDADR  530 (617)
T ss_pred             cchhhHHHHHHHHHHhCccccceeccCChHHHHHHcCCCCccCcccchheeEecCCceEEEecHHHHHHHHHcCCCHHHH
Confidence             4679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCce
Q psy1689         455 KDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKT  533 (998)
Q Consensus       455 ~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt  533 (998)
                      ++++....|++++++.+|++.+.+|+||+||+|++||+|||++|||||||||+|||+|+ .+.++|.++|++||++||||
T Consensus       531 ~~~~~~~~g~~~~~~~~~~~~~~~f~tA~di~~~~~i~~~a~~Q~~vDqsiS~tl~~~~~~~~~dv~~~y~~Aw~~GlK~  610 (617)
T TIGR02506       531 RGDIVENVGSPQPIAAIPETLKYKYKTAYELDQEALIDMAADRQKFVDQSISLNLFLTEEVTAKDLLKLLLLAWKKGLKT  610 (617)
T ss_pred             HHHHHhhCCCccCCCCCChhHHHHhchHhcCCHHHHHHHHHHHhcccccccCCeeeCCCCCCHHHHHHHHHHHHHcCCCE
Confidence            99998889999999999999999999999999999999999999999999999999996 79999999999999999999


Q ss_pred             EEEEeecc
Q psy1689         534 GMYYLRTK  541 (998)
Q Consensus       534 ~~yY~R~~  541 (998)
                       |||||++
T Consensus       611 -~YY~r~~  617 (617)
T TIGR02506       611 -MYYCRSR  617 (617)
T ss_pred             -EEEeecC
Confidence             9999985

This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage.

>PF02867 Ribonuc_red_lgC: Ribonucleotide reductase, barrel domain; InterPro: IPR000788 Ribonucleotide reductase (1

Probab=100.00  E-value=2.8e-110  Score=993.80  Aligned_cols=470  Identities=41%  Similarity=0.694  Sum_probs=421.6

Q ss_pred             hhhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCcee
Q psy1689          69 DSWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWS  147 (998)
Q Consensus        69 ~s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~  147 (998)
                      .+....|.++|+... ...++|+|+||+|+||++|||||++||++|+++|++.+|++++|+||+|||+||++|++|++|+
T Consensus        55 ssG~v~~~~~~~~~~~~i~q~g~RrGa~~~~l~~~HpDi~~fi~~k~~~~~~~~r~~~~n~sv~i~D~Fm~~v~~~~~w~  134 (538)
T PF02867_consen   55 SSGPVSFMKLFDSSARAINQGGKRRGAQMVYLDIWHPDIEEFIDAKNNNGDEERRLRNLNISVNIPDEFMEAVENDEDWY  134 (538)
T ss_dssp             CCHHHHHHHHHHHHHHHSSSTTSSSTEEEEEEETTBTTHHHHCTTTSSSSTCCG-STTEEEEEEE-HHHHHHHHTT-EEE
T ss_pred             CCCchhHHHHHHHHhhHhhhccccccceeeeccCCHHHHHHHHHHhhcccchhhhhcccceeEEecHHHHHHhhcCCCCE
Confidence            456789999999886 4456788999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCCcchhhchhHHHHHHHHHHcCc-ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCC
Q psy1689         148 LMCPNTCRGLSDSWGEKFDDLYKKYEAEGK-FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNL  226 (998)
Q Consensus       148 Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~-~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNp  226 (998)
                      ||+|++++.|+++||++|++.|.++++++. ..++|+||+||++|++++|+||+|||+|+|++|+++|.++.|+|++|||
T Consensus       135 L~~p~~~~~l~~~~g~~f~~~y~~~~~~~~~~~~~v~Ar~l~~~I~~~~~~tG~Pgi~f~D~~Nr~~~~~~~~~I~~sN~  214 (538)
T PF02867_consen  135 LFDPRDAPELYDLYGEEFEKEYERYERNGKIRKKTVPARELWEKILESAWETGEPGIIFIDNVNRHNPLKHGGPIRASNP  214 (538)
T ss_dssp             EBCTTCSTTHHHHHHHHHHHHHHHHHHTTTSEEEEEEHHHHHHHHHHHHHHHS-SEEEEHHHHHHTSTTGGTSTEEEE-T
T ss_pred             EECCCcccchhhhhCCcHHHHHHHhhcCCCceeccccHHHHHHHHHHHHhhhCCceehhhHHHHhcCcccCCCeEeecCC
Confidence            999999999999999999999999999874 7899999999999999999999999999999999999999999999999


Q ss_pred             ccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccch
Q psy1689         227 CTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQG  306 (998)
Q Consensus       227 C~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~G  306 (998)
                      |+||+|+++++++++|||+||||++|++++...||++.|+++|++++|+||+|||.+.||+|++++.++++|+||||+||
T Consensus       215 C~Ei~l~~~~~~~~~CnL~SiNL~~~~~~~~~~~d~~~l~~~v~~avr~Ld~vid~~~~p~~~~~~~~~~~R~iGlGv~G  294 (538)
T PF02867_consen  215 CGEIPLPTSPDPYASCNLGSINLARFVEDPFGRFDWEELREVVRLAVRFLDNVIDINDYPLPEARRANKRYRSIGLGVMG  294 (538)
T ss_dssp             TSSSEEE-BTTBTEEEEEEEEEGGGGCETTSCEETHHHHHHHHHHHHHHHHHHHHHS--SSHHHHHHHHHH--EEEEEES
T ss_pred             CcceeecccccccccceeeeechhhhcccccccccHHHHhhHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCcccccccc
Confidence            99999999999999999999999999987556899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCC-----------C
Q psy1689         307 LADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-----------T  375 (998)
Q Consensus       307 Lad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p-----------~  375 (998)
                      ||++|+++|++|+|+||++++++||+.|+++|++||++||+|+|+||+|++|+|++|.++++.|....           .
T Consensus       295 la~~L~~~gi~y~S~ea~~~~~~i~e~i~~~a~~aS~~LA~e~G~~~~f~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~  374 (538)
T PF02867_consen  295 LADMLAKLGIPYDSEEARELADEIFEHIYYAAYRASVELAKERGPFPWFEKSKYARGELPFDRWDKLVDERSKVEKGLSI  374 (538)
T ss_dssp             HHHHHHHTT--TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSTTGGGSTGGGTCCHHHHTTCSCCGSSHHHCT---
T ss_pred             HHHHHHhCCcCcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCchhcccchhhhhhhcccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999885421           1


Q ss_pred             CHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHH
Q psy1689         376 DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMK  455 (998)
Q Consensus       376 ~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~  455 (998)
                      +..+|++||+++++||+|||+++|||||||||+++|+|+||||+|+++|.|++..|++.++|+++.+.|+++|+|+++++
T Consensus       375 ~~~~W~~Lr~~i~~~G~RNs~~~aiAPTgs~S~i~g~S~gIeP~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  454 (538)
T PF02867_consen  375 PTEDWDELREDIKKYGLRNSQLTAIAPTGSISLIAGTSSGIEPIFANVYTRRSLSGEFPVVNPYLLRDLKELGIWDEELI  454 (538)
T ss_dssp             TTSHHHHHHHHHHHH--SSSS-BBBS--TTHHHHHTS-STTS--SSSEEEEEETTSCEEEE-HHHHHHHHHTTHHSHHHH
T ss_pred             chhhHHHHHHHHhhhcCCcceeecCCCCCCeEeecCcCceeccchhhhhhhhhhcCCCcccChHHHHHHHHhCCcHHHHH
Confidence            23489999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceE
Q psy1689         456 DQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTG  534 (998)
Q Consensus       456 ~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~  534 (998)
                      +.|..++|++++++.+|++.+.+|+||+||+|++||+|||++|||||||||+|||+|+ .+.++|.++|++||++||||+
T Consensus       455 ~~i~~~~gsv~~~~~~~~~~~~~f~tA~ei~~~~~i~~~a~~Q~~vDqsiS~t~~~p~~~~~~~v~~~~~~A~~~GlK~~  534 (538)
T PF02867_consen  455 EEILRHQGSVQGLPELPDELKDVFKTAFEIDPEDHIRMQAARQKFVDQSISKTLNLPSDATVEDVAELYLYAWKLGLKGI  534 (538)
T ss_dssp             HHHHHTTTCCTT-TTS-HHHHHHT--GGGSCHHHHHHHHHHHHTTSSS-B-BEEEEGTTEEHHHHHHHHHHHHHTT-SEE
T ss_pred             HHHHhhhccccccccCCcchhhhcccHHhCCHHHHHHHHHHhhccCccCcCceeeecCCCCHHHHHHHHHHHHHhCCCee
Confidence            9999999999999999999999999999999999999999999999999999999985 689999999999999999999


Q ss_pred             EEEe
Q psy1689         535 MYYL  538 (998)
Q Consensus       535 ~yY~  538 (998)
                      |||+
T Consensus       535 tyY~  538 (538)
T PF02867_consen  535 TYYR  538 (538)
T ss_dssp             ECEE
T ss_pred             EEeC
Confidence            9995

17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1DQ3_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A 1XJJ_A 1XJG_A 1XJM_B 3O0N_B ....

>PRK08447 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=4.9e-110  Score=1008.27  Aligned_cols=441  Identities=37%  Similarity=0.635  Sum_probs=410.6

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++++... ...++|+|+||+|+||++|||||++||++|+++|++.+|++++|+||+|||+||++|++|++|+|
T Consensus       267 sGvvp~~k~~n~~~~~v~QgG~RrGA~avyL~~wHpDI~~FL~~K~~~g~e~~r~~~l~~sv~ipD~FM~~v~~d~~w~L  346 (789)
T PRK08447        267 GGIIPFLKITNDIAIAVDQLGTRKGAIAVYLEPWHMDISDFIDLRKNSGEERRRAHDLFPALWINDLFMKRVEEDAMWTL  346 (789)
T ss_pred             CChhhHHHHHHHHHHHHHhCCccccceEEEEeCCCccHHHHHHHhhcccchhhhhhcCeeeeeeCHHHHHHHHcCCCEEE
Confidence            34568888888875 45677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCcchhhchhHHHHHHHHHHc-CcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCc
Q psy1689         149 MCPNTCRGLSDSWGEKFDDLYKKYEAE-GKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLC  227 (998)
Q Consensus       149 f~P~~~~~L~~~yg~~F~~~Y~~~e~~-g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC  227 (998)
                      |+|+++++|.++||++|++.|.+++++ +..+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++||||
T Consensus       347 f~P~~~~~l~~~yG~~f~~~Y~~~e~~~~~~~~~V~AreLw~~I~~~~~eTG~Pyi~f~D~~Nr~np~~~~G~I~~SNlC  426 (789)
T PRK08447        347 FDPYECKDLTELYGEEFEKRYLEYEKDEKIIKEYINAKELWKKILTNYFETGLPFLCFKDNANRANPNAHAGIIRSSNLC  426 (789)
T ss_pred             ecCCccchhhhhhChHHHHHHHHHHhccCeeeEEEeHHHHHHHHHHHHHHHCCceEEEhhhhhhcCCCCCCCeeeecccc
Confidence            999999999999999999999999985 4568999999999999999999999999999999999999999999999999


Q ss_pred             cceecccCCC--------------------------------------------------------Ccceeeeccccccc
Q psy1689         228 TEIVEYTSKD--------------------------------------------------------EVAVCNLASIALNM  251 (998)
Q Consensus       228 ~EI~l~~~~~--------------------------------------------------------~~~~CNL~SINL~~  251 (998)
                      +||+||++|+                                                        ++++||||||||++
T Consensus       427 ~EI~q~~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~~vCNLgSiNL~~  506 (789)
T PRK08447        427 TEIFQNTAPNHYKIKIEFEDGSIEFFEEEELVTVDSGITKKAKKITSLDSLKGKKIYIVEKEKKDGKTAVCNLASINLSK  506 (789)
T ss_pred             cccCCCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEecHHHHHHH
Confidence            9999987662                                                        66899999999999


Q ss_pred             ccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHH
Q psy1689         252 YINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIF  331 (998)
Q Consensus       252 ~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~  331 (998)
                      |+       |++.|+++|+++||+||+|||++.||+|+++++|+++|+||||+|||||+|+++||+|+|+||++++++||
T Consensus       507 ~v-------~~~~l~~~v~~avR~LDnVID~n~yP~~~~~~~n~~~R~IGLGvmGlad~La~lgi~Y~S~eA~~~~~~i~  579 (789)
T PRK08447        507 IN-------TKEDIERVVPIAIRMLDNVIDLNFYPNRKVKATNLKSRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDEIM  579 (789)
T ss_pred             hc-------CHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHhcCCCeeeeHHHHHHHHHHCCCCcCCHHHHHHHHHHH
Confidence            96       56899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCC----------CHhhHHHHHHHHHhcCCCcccccccC
Q psy1689         332 ETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT----------DLWDWAALKEKIAKHGVRNSLLIAPM  401 (998)
Q Consensus       332 e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~----------~~~~W~~Lr~~i~~~G~RNs~ltaia  401 (998)
                      |.|+++|++||++||+|+|+||.|++|+|++|.|+++.|.....          ..++|++|+++|++||+|||+++|||
T Consensus       580 e~i~y~A~~aS~eLAkErG~fp~f~~S~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~L~~~I~k~GlRNs~l~AiA  659 (789)
T PRK08447        580 EQISYNAIDASSNLALEKGVYPDFEGSNWSKGIFPIDKANEEAKKLVERGGLFDSACDWEGLREKVKKDGMRNGYLMAIA  659 (789)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcCcChhhcCccchhhhhchhhhhhcccccccchhhHHHHHHHHHHhCccccceeeeC
Confidence            99999999999999999999999999999999999888765321          24699999999999999999999999


Q ss_pred             CccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhccc
Q psy1689         402 PTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT  481 (998)
Q Consensus       402 PTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~t  481 (998)
                      ||||||+|+|+|+||||+|++.|.|++.+|+|+++|++|.                               ++..++|+|
T Consensus       660 PTgS~S~i~g~S~gIEP~~s~~~~~~~~~g~~~~~~p~L~-------------------------------~~~~~~y~t  708 (789)
T PRK08447        660 PTSSISILVGTTQTIEPVYKRKWFEENLSGLIPVVVPNLS-------------------------------PETWQYYTP  708 (789)
T ss_pred             ChHHHHHHhCCCcCcCcccchheeEEeccceeEeeCCCCC-------------------------------hHHHHHhch
Confidence            9999999999999999999999999999999998887553                               334458999


Q ss_pred             ccCCChHHHHHHHHHhCCccccccceeEeecC--CCHHHHHHHHHHHHHcCCceEEEEeeccccccccch
Q psy1689         482 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE--INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQF  549 (998)
Q Consensus       482 A~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~--~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~~~  549 (998)
                      ||||+|+++|+|+|++|||||||||+|||++.  ++.++|.++|++||++|||| +||+|+++...+..+
T Consensus       709 A~ei~~~~~I~~~A~rQk~IDQsiS~nl~~~~~~~t~~~l~~~y~~Awk~GlKt-~YY~Rt~~~~~~~~~  777 (789)
T PRK08447        709 AYDLDQKDLIKAAAVRQKWIDQGQSLNIFLSLDKASGKYLNEIYTLAWKLGLKS-TYYLRSESPESEEVS  777 (789)
T ss_pred             HHhCCHHHHHHHHHHHhcccchhhcCccccCCCCCCHHHHHHHHHHHHHcCCCE-EEEEeccchhhcccc
Confidence            99999999999999999999999999999993  68999999999999999999 699999987665433

>PRK09209 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=9.6e-108  Score=990.01  Aligned_cols=432  Identities=33%  Similarity=0.535  Sum_probs=401.8

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++++... ...++|+|+||+|+||++|||||++||++|+++|++..|++++|+||+|||+||++|++|++|+|
T Consensus       288 sG~vp~lk~~n~~~~~v~QgG~RrGA~avyL~~wHpDI~~FL~~K~~~gde~~R~~~l~~~v~ipD~FM~~V~~d~~w~L  367 (761)
T PRK09209        288 SGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLDVWHKDIESFLDLRLNNGDERLRAHDVFTGVCIPDLFMEAVERRGDWYL  367 (761)
T ss_pred             cCHHHHHHHHHHHHHHHHcCCccCCceeEEEeCCcccHHHHHHhhcccccHHHhhhcchhhhccCHHHHHHHHCCCCEEE
Confidence            34568888888876 45677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCC-----Ccchhhch-----hHHHHHHHHHHc-CcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCC
Q psy1689         149 MCPNTCR-----GLSDSWGE-----KFDDLYKKYEAE-GKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQN  217 (998)
Q Consensus       149 f~P~~~~-----~L~~~yg~-----~F~~~Y~~~e~~-g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~  217 (998)
                      |+|++++     +|.++||+     +|+++|++++++ +..+++|+||+||++|++++|+||+|||+|+|++|++||+++
T Consensus       368 f~P~~~~~~~g~~L~d~yg~~~~~g~f~~~Y~~~~~~~~~~~~~v~Ar~Lw~~I~~s~~eTG~Pyi~f~D~~N~~np~~~  447 (761)
T PRK09209        368 FDPHEVKKVMGWYLEDFYDEKKGDGSFREKYEECVADERLSRKTVKAIDIMKRIMVSQLETGNPFMFYRDEVNRMNPNKH  447 (761)
T ss_pred             ECccccccccCccHHHhhccccccchHHHHHHHHHhCcCceeeeecHHHHHHHHHHHHHHhCCCeEEeHHHHhhcCCccc
Confidence            9999987     69999997     899999999986 557899999999999999999999999999999999999999


Q ss_pred             CCceeecCCccceecccCCC-------------------CcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHH
Q psy1689         218 LGTIKCSNLCTEIVEYTSKD-------------------EVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNK  278 (998)
Q Consensus       218 ~g~I~~sNpC~EI~l~~~~~-------------------~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~  278 (998)
                      .|+|++||||+||+||++|+                   ++++|||+||||++|+.+       +.|+++|+++||+||+
T Consensus       448 ~G~I~~SNlC~EI~q~~~p~~~~~~~~~~~~~~~~~~~g~~~vCNL~SiNL~~~v~~-------~~l~~~v~~avR~LDn  520 (761)
T PRK09209        448 EGMIYSSNLCTEIMQNMSPTVMIQEIISGGQIVITKQPGDFVVCNLSSINLGRAVTA-------DVLERLIPIQVRMLDN  520 (761)
T ss_pred             CCeeEeecCCcccccCCCccccccccccccccccccccCCceEEEChHHHHHHHhch-------HHHHHHHHHHHHHHHH
Confidence            99999999999999987763                   468999999999999852       6899999999999999


Q ss_pred             hhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy1689         279 IIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGS  358 (998)
Q Consensus       279 vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S  358 (998)
                      |||++.||+|+++++|+++|+||||+|||||+|+++|++|+|+||++++++|||+|+++|++||++||+|+|+||.|++|
T Consensus       521 VID~n~yP~~~~~~~n~~~R~IGLGv~Glad~L~~lgi~Y~S~eA~~~~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S  600 (761)
T PRK09209        521 VIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLALKGIAWESEEAVQYADELYERINYLTIQASMELAKEKGAYPVFKGS  600 (761)
T ss_pred             HHhcccCchHHHHHHHHhccccccchhhHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeCh
Q psy1689         359 PVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH  438 (998)
Q Consensus       359 ~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~  438 (998)
                      +|++|.+ ++.+...   ..+|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|.+.+|.+.++  
T Consensus       601 ~~~~g~~-~~~~~~~---~~~W~~L~~~i~~~GlRNs~l~AiAPT~StS~i~g~t~giEP~~s~~y~r~~~~~~~~~~--  674 (761)
T PRK09209        601 DWQTGEY-FERRGYN---SPQWDELAAQVAENGVRNAYLMAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVT--  674 (761)
T ss_pred             hhhccch-hhhcCCc---hhhHHHHHHHHHHhCcchhceeeeCCcHHHHHHcCCCCccCcchhhHhhhhhccceeecc--
Confidence            9999997 5555443   358999999999999999999999999999999999999999999999998766654432  


Q ss_pred             hHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhc-ccccCCChHHHHHHHHHhCCccccccceeEeecCC-CH
Q psy1689         439 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY-KTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEI-NY  516 (998)
Q Consensus       439 ~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f-~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~-t~  516 (998)
                                                   +|.||++.+++| +|||||+|+++|+|+|++|||||||||+|||++++ +.
T Consensus       675 -----------------------------~p~l~~~~~~~y~~tA~ei~~~~~I~~~A~rQ~~IDQsiS~nl~~~~~~~~  725 (761)
T PRK09209        675 -----------------------------APDLSLDTWPYYEKGAYKVDQFWSIRQNAARQRHVDQSISFNFYVPSTIRA  725 (761)
T ss_pred             -----------------------------CCCCChhHHHHHhhhHhhCCHHHHHHHHHHHcccccccccCceeCCCCCCH
Confidence                                         356788889999 99999999999999999999999999999999964 68


Q ss_pred             HHHHHHHHHHHHcCCceEEEEeeccccc
Q psy1689         517 AKMSSMHFHGWKLGLKTGMYYLRTKPAA  544 (998)
Q Consensus       517 ~~i~~~~~~Awk~GlKt~~yY~R~~~~~  544 (998)
                      ++|.++|++||++|||| +||+|+++..
T Consensus       726 ~~l~~~y~~Awk~GlKt-~YY~Rt~~~~  752 (761)
T PRK09209        726 SELLDLHMTAWKEGLKT-TYYVRSTDID  752 (761)
T ss_pred             HHHHHHHHHHHHhCCCe-EEEeeccCcc
Confidence            99999999999999999 7999998753

>PHA02572 nrdA ribonucleoside-diphosphate reductase subunit alpha; Provisional

Probab=100.00  E-value=1.3e-107  Score=987.96  Aligned_cols=439  Identities=28%  Similarity=0.454  Sum_probs=411.4

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++|+... ...++|+|+||+|+||++|||||++||++|+++|+++.|++++|+||+|||+||++|++|++|+|
T Consensus       274 sG~vp~lk~~d~~~~~v~QgG~R~GA~~vyL~~wHpDI~~FL~~K~~~g~e~~r~~~l~~~v~ipD~Fm~~v~~~~~w~L  353 (753)
T PHA02572        274 TGVIPFWKHFQTAVKSCSQGGIRGGAATAYYPIWHLEVEDLLVLKNNKGVEENRIRHLDYGVQINDLMYERFIKNDYITL  353 (753)
T ss_pred             CChhhHHHHHHHHHHHHhcCCcccCceEEEEeCCCcCHHHHHHHhcccCcchhhhhhhhhHhhcCHHHHHHHHcCCCEEE
Confidence            34568888888875 44677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCC-cchhh---chhHHHHHHHHHHcC-cceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceee
Q psy1689         149 MCPNTCRG-LSDSW---GEKFDDLYKKYEAEG-KFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKC  223 (998)
Q Consensus       149 f~P~~~~~-L~~~y---g~~F~~~Y~~~e~~g-~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~  223 (998)
                      |+|+++++ |.+.|   |++|+++|+++|+++ ..+++|+||+||++|++++|+||+|||+|+|++|+++|+  .|+|++
T Consensus       354 f~P~~~~~~l~~~~~~~~~ef~~~Y~~~e~~~~~~~~~v~AreLw~~I~~~~~etG~Pyi~f~D~~N~~~~~--~g~I~~  431 (753)
T PHA02572        354 FSPHDVGGELYDAYFADQDRFRELYEALEKDPSVRKKRIKAQELFLLLLKERSETGRIYIMFIDHCNNHSPF--KDPIRQ  431 (753)
T ss_pred             eCCccCccchhhhhccchhHHHHHHHHHHhcccceeEEEeHHHHHHHHHHHHhccCCcceEeehhhhhcCcc--cCceee
Confidence            99999998 99988   599999999999987 458999999999999999999999999999999999987  899999


Q ss_pred             cCCccceecccCC-------CCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhh
Q psy1689         224 SNLCTEIVEYTSK-------DEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMR  296 (998)
Q Consensus       224 sNpC~EI~l~~~~-------~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~  296 (998)
                      ||||+||+||+.+       +++++||||||||++|       ||++.|+++|+++||+||+|||.+.||++++ +++++
T Consensus       432 SNlC~Ei~l~~~~~~~~d~~~e~~~CNL~SINL~~~-------~D~~~l~~~v~~avr~LDnVID~~~yP~~~~-~~~~~  503 (753)
T PHA02572        432 SNLCCEIALPTKPLNHIDGEGEIALCTLSAIVLGNF-------EDQDEIEELAEVAVRALDNLLDYQDYPVPAA-LKAKK  503 (753)
T ss_pred             cCCCccccCCCCccccccCCCceEEEECHHHHHHHh-------cCHHHHHHHHHHHHHHHHHHHhccCCChHHH-Hhhhh
Confidence            9999999999987       8899999999999998       6899999999999999999999999999999 99999


Q ss_pred             cCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCC-
Q psy1689         297 HRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT-  375 (998)
Q Consensus       297 ~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~-  375 (998)
                      +|+||||+|||||+|+++|++|+|+|| +++++|||.|+++|++||++||+|+|+||.|++|+|++|.|+++.|...+. 
T Consensus       504 ~R~IGLGv~Glad~L~~lgi~Y~S~eA-~l~~~i~e~i~~~A~~aS~eLAkE~G~~p~f~~S~~~~G~~~~~~~~~~~~~  582 (753)
T PHA02572        504 RRSLGVGVTNYAHYLAKNFASYEDANA-DLVHELFERLQYYLIKASNKLAKEKGACEYFSDTKYSRGELPIDWYKKKVDE  582 (753)
T ss_pred             cCccccchhHHHHHHHHCCCCcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChhhcccchhhcccchhhh
Confidence            999999999999999999999999999 999999999999999999999999999999999999999999998875331 


Q ss_pred             -----CHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCC
Q psy1689         376 -----DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW  450 (998)
Q Consensus       376 -----~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~  450 (998)
                           ..++|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|.++|+++.         
T Consensus       583 ~~~~~~~~dW~~L~~~i~~~GlRNs~l~AiaPT~S~S~i~g~s~giEP~~s~~~~r~~~~G~~~~~~p~l~---------  653 (753)
T PHA02572        583 LVAPKYNCDWESLREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKKSKEGPFNQVVPNVE---------  653 (753)
T ss_pred             hcccchhhhHHHHHHHHHHhCccccceeeeCCcHHHHHHhCCCCccCcccccEEEEEecCceEEEeCCCHH---------
Confidence                 247999999999999999999999999999999999999999999999999999999999987752         


Q ss_pred             cHHHHHHHhhcCCcccccCCCChhhhhhcccccCC---ChHHHHHHHHHhCCccccccceeEeecCC-------CHHHHH
Q psy1689         451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI---PQKTVLDMAADRGAFIDQSQSLNIYMAEI-------NYAKMS  520 (998)
Q Consensus       451 ~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei---~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~-------t~~~i~  520 (998)
                                             +++++|+|||||   +|+++|+|+|+||||||||||+|||+..+       +.++|.
T Consensus       654 -----------------------~~~~~ykta~~i~~~~~~~~i~~~A~rq~~IDQsqS~nl~~~~~~~~~~~~~~~~l~  710 (753)
T PHA02572        654 -----------------------TLKDLYDLLWDLAKKGNKGYLTQVAIMQKFVDQAISANTSYDPENYPNGKVPMSVML  710 (753)
T ss_pred             -----------------------HHHHHHHhHHHhcccChHHHHHHHHHHhccCchhhcceeeecCCcCcccccCHHHHH
Confidence                                   234589999999   99999999999999999999999998642       578999


Q ss_pred             HHHHHHHHcCCceEEEEeeccccccccchhhh
Q psy1689         521 SMHFHGWKLGLKTGMYYLRTKPAANAIQFTID  552 (998)
Q Consensus       521 ~~~~~Awk~GlKt~~yY~R~~~~~~~~~~~~~  552 (998)
                      ++|++||++|||| +||+|+++++++++..+.
T Consensus       711 ~~~~~Aw~~GlKT-~YY~rt~~~~~~~~~~~~  741 (753)
T PHA02572        711 DDLLYFYYYGGKT-LYYHNTRDGKGTEDYEIE  741 (753)
T ss_pred             HHHHHHHHhCCce-EeecCccccccccccccc
Confidence            9999999999999 799999999999998876

>PRK09103 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=3.9e-107  Score=982.83  Aligned_cols=443  Identities=28%  Similarity=0.472  Sum_probs=412.1

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++|+... ...++|+|+||+|+||++|||||++||++|+++|++.+|++++|+||+|||+||++|++|++|+|
T Consensus       273 sG~vp~mk~~d~~~~~v~QgG~RrGA~~vyL~~wHpDI~~FL~~K~~~g~e~~r~~~l~~sv~ipD~FM~~v~~d~~w~L  352 (758)
T PRK09103        273 TGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITL  352 (758)
T ss_pred             CChHHHHHHHHHHHHHHHcCCCCCcceEEEecCCCccHHHHHHhcccCCchhhhHhhCchhhccCHHHHHHHHcCCCeEE
Confidence            44578888888875 44677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCcchhh---chhHHHHHHHHHHcCc-ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCC-CCCCceee
Q psy1689         149 MCPNTCRGLSDSW---GEKFDDLYKKYEAEGK-FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQ-QNLGTIKC  223 (998)
Q Consensus       149 f~P~~~~~L~~~y---g~~F~~~Y~~~e~~g~-~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~-~~~g~I~~  223 (998)
                      |+|+++++|.+.|   |++|+++|.++++++. .+++|+||+||++|++++++||.||++|+|++|+++|+ ++.|+|++
T Consensus       353 f~P~~~~~l~~~~~~~~~ef~~~Y~~~e~~~~~~~~~v~AreLw~~I~~~~~etG~pfi~fkD~~N~~~p~~~~~g~I~~  432 (758)
T PRK09103        353 FSPSDVPGLYDAFFADQDEFERLYTKYEQDDSIRKKRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPKVAPVRQ  432 (758)
T ss_pred             eCccccccccccccchhHHHHHHHHHHHhcCCeeeEEEeHHHHHHHHHHHhcCcCCceeeechhhhhcCCCCccCCeeee
Confidence            9999999999988   5899999999998874 67999999999999999999999999999999999995 68999999


Q ss_pred             cCCccceecccCC--------CCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHh
Q psy1689         224 SNLCTEIVEYTSK--------DEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNM  295 (998)
Q Consensus       224 sNpC~EI~l~~~~--------~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~  295 (998)
                      ||||+||+||+.|        +++++||||||||++|       ||++.|+++|+++||+||+|||.+.||+|+++++++
T Consensus       433 SNlC~Ei~l~~~p~~~~~~~~~e~~vCNLgSINL~~~-------~d~~~l~~~v~~avr~LDnVID~~~yP~~~~~~~n~  505 (758)
T PRK09103        433 SNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAI-------NSLDELEELADLAVRALDALLDYQDYPIPAAKRGAM  505 (758)
T ss_pred             cCcccccccCCcccccccccCCCeeEEEhHHHHHHHh-------cCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence            9999999999875        7889999999999998       588999999999999999999999999999999999


Q ss_pred             hcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCC-
Q psy1689         296 RHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-  374 (998)
Q Consensus       296 ~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p-  374 (998)
                      ++|+||||+|||||+|+++|++|+|+||++++++|||.|+++|++||++||+|+|+||.|++|+|++|.|+++.|...+ 
T Consensus       506 ~~R~IGLGvmGlad~L~~lgi~Y~S~eA~~l~~~i~e~i~~~A~~aS~eLAkErG~fp~f~~S~~~~G~~~~~~~~~~~~  585 (758)
T PRK09103        506 GRRTLGIGVINFAYYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDLD  585 (758)
T ss_pred             hcCccccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhcCCchhhhhhhhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999876532 


Q ss_pred             -----CCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCC
Q psy1689         375 -----TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL  449 (998)
Q Consensus       375 -----~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~  449 (998)
                           ...++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|++.+|.+..++|.+         
T Consensus       586 ~~~~~~~~~dW~~Lr~~i~~~GlRNs~l~AiaPTgS~S~i~g~s~giEP~~s~~~~k~~~~g~~~~~~p~~---------  656 (758)
T PRK09103        586 AICNEPLHYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILKQVVPDY---------  656 (758)
T ss_pred             ccccccchhhHHHHHHHHHHhCccccceeecCCcHHHHHHhCcCCCcCccccceeeeeccCceeeecCCCH---------
Confidence                 134799999999999999999999999999999999999999999999999998888776665544         


Q ss_pred             CcHHHHHHHhhcCCcccccCCCChhhhhhcccccCC-ChHHHHHHHHHhCCccccccceeEeecC-------CCHHHHHH
Q psy1689         450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI-PQKTVLDMAADRGAFIDQSQSLNIYMAE-------INYAKMSS  521 (998)
Q Consensus       450 ~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei-~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-------~t~~~i~~  521 (998)
                                             ++++..|+++|+| +|+++|+|+|++|||||||||+|||+++       .+.++|.+
T Consensus       657 -----------------------~~~~~~y~~~~~i~~~~~~I~~~A~rQ~~VDQsqS~nl~~~~~~~~~~~~t~~~l~~  713 (758)
T PRK09103        657 -----------------------ERLKDAYELLWEMPNNDGYLQLVGIMQKFVDQSISANTNYDPSRFPSGKVPMKQLLK  713 (758)
T ss_pred             -----------------------HHHHHHHHHHHhccChHHHHHHHHHHhhhcchhhcceeeecccccccCCCCHHHHHH
Confidence                                   2334568889999 5899999999999999999999999842       47899999


Q ss_pred             HHHHHHHcCCceEEEEeeccccccccchhhh
Q psy1689         522 MHFHGWKLGLKTGMYYLRTKPAANAIQFTID  552 (998)
Q Consensus       522 ~~~~Awk~GlKt~~yY~R~~~~~~~~~~~~~  552 (998)
                      +|++||++|||| +||+|+++++++++||+.
T Consensus       714 ~~~~Aw~~GlKT-~YY~rs~~~~~~~~~~~~  743 (758)
T PRK09103        714 DLLTAYKFGVKT-LYYHNTRDGAEDAQDDLQ  743 (758)
T ss_pred             HHHHHHHhCCce-EeecCchhhhhhhhhhcc
Confidence            999999999999 799999999999999987

>PRK07088 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=7.2e-107  Score=981.19  Aligned_cols=428  Identities=32%  Similarity=0.551  Sum_probs=396.8

Q ss_pred             hhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceeee
Q psy1689          71 WGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLM  149 (998)
Q Consensus        71 ~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~Lf  149 (998)
                      ....|.++|+... ...++|+|+||+|+||++|||||++||++|+++|++.+|++++|+||+|||+||++|++|++|+||
T Consensus       291 Gvvp~lk~~n~~~~~v~QgG~R~GA~avyL~~wHpDI~~FL~lK~~~g~e~~r~~~l~~~v~ipD~FM~~v~~d~~w~Lf  370 (764)
T PRK07088        291 GVIPWIKLYNDTAIAVDQLGKRKGGAAITLDIWHKDIPEFLDLKTNNGDDRRKAHDIFPGVSYPDLFMKRLEKRENWSLF  370 (764)
T ss_pred             ChhhHHHHHHHHHHHHHhCCccccceeEEEeCCCccHHHHHHhccccchhHHHHhhChhhhccCHHHHHHHHcCCCeEEE
Confidence            3568888888875 456778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC-----Ccchhhch----hHHHHHHHHHHc-CcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCC
Q psy1689         150 CPNTCR-----GLSDSWGE----KFDDLYKKYEAE-GKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLG  219 (998)
Q Consensus       150 ~P~~~~-----~L~~~yg~----~F~~~Y~~~e~~-g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g  219 (998)
                      +|++++     +|.++||+    +|+++|.+++++ +..+++|+||+||++|++++|+||+|||+|+|++|++||+++.|
T Consensus       371 ~P~~~~~~~g~~L~d~yg~~~~~ef~~~Y~~~~~~~~~~~~~v~AreLw~~I~~~~~eTG~Pyi~f~D~~Nr~np~~~~G  450 (764)
T PRK07088        371 DPHEIKKVKGYSLEDYYDEEDRKEFTKKYLECEEDTNIPRRTVPVLDIMKKIMKSAVETGTPFIFFRDTVNKANPNKHKG  450 (764)
T ss_pred             CccccccccCccHHHHhccchhhhHHHHHHHHHhcccceeEEEeHHHHHHHHHHHHHHhCCCeEEeHHHHhhcCCCCCCC
Confidence            999987     69999999    999999999985 55789999999999999999999999999999999999999999


Q ss_pred             ceeecCCccceecccCCC-----------------------CcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHH
Q psy1689         220 TIKCSNLCTEIVEYTSKD-----------------------EVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNL  276 (998)
Q Consensus       220 ~I~~sNpC~EI~l~~~~~-----------------------~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~L  276 (998)
                      +|++||||+||+||++++                       ++++|||+||||++        ||++.|+++|+++||+|
T Consensus       451 ~I~~SNlCtEI~q~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vCNL~SinL~~--------~d~~~l~~~v~~avr~L  522 (764)
T PRK07088        451 MIYSSNLCHEIAQNMSESELLEEEIIDENGYYEVVQKIKAGDMVTCNLNSIVLGN--------VDDEELEEVIPTQIRML  522 (764)
T ss_pred             eeeecCCchHhhccCCcccccccccccccccccccccccCCCceEEEcHHHHHhh--------hcHHHHHHHHHHHHHHH
Confidence            999999999999988763                       34899999999986        48899999999999999


Q ss_pred             HHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy1689         277 NKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE  356 (998)
Q Consensus       277 D~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~  356 (998)
                      |+|||++.||+|+++++|+++|+||||||||||+|+++|++|+|+||++++++|||.|+++|++||++||+|+|+||.|+
T Consensus       523 DnVID~n~yP~~~a~~~n~~~R~IGLGvmGlad~La~lgi~Y~S~eA~~l~~~i~e~i~~~A~~aS~eLAkE~G~yp~f~  602 (764)
T PRK07088        523 DNVISLNYYPVPEAEITSDKYRAIGLGTSGYHHMLANNKIRWESDEHIKFADKIYEEIAYYAIKASMELAKEKGSYPAFK  602 (764)
T ss_pred             HHHHhcCCCchHHHHHHHHhcCccceeHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEe
Q psy1689         357 GSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVV  436 (998)
Q Consensus       357 ~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~v  436 (998)
                      +|+|++|.+ |+.+...   ..+|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|..        
T Consensus       603 ~S~~~~g~~-~~~~~~~---~~~W~~L~~~i~~~GlRNs~l~AiAPT~StS~i~g~s~giEP~~~~~~~r~~--------  670 (764)
T PRK07088        603 GSEWETGKY-FERRGYN---SERWKKLKEEIKKYGMRNGYITAVAPTGSTSNIANTTAGIDPVFKRFFMEEK--------  670 (764)
T ss_pred             cChhhccch-hhccccc---cccHHHHHHHHHHhCccccccccCCCCcchhhhcCCCCcccchhhhHhhhhc--------
Confidence            999999986 5555433   3489999999999999999999999999999999999999999999998752        


Q ss_pred             ChhHHHHHHHcCCCcHHHHHHHhhcCCccc--ccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-
Q psy1689         437 NHHLLRDLVELGLWDDNMKDQLIVNNGSIQ--DIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-  513 (998)
Q Consensus       437 n~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~--~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-  513 (998)
                                               +|+++  .+|.+|++.+++|+|||||+|++||+|+|++|+|||||||+|||+++ 
T Consensus       671 -------------------------~g~~~~~~~~~l~~~~~~~y~tA~ei~~~~~I~~~A~rQ~~IDqsiS~nl~~~~~  725 (764)
T PRK07088        671 -------------------------KGSFTPKTAPDLNEENFWYYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITPE  725 (764)
T ss_pred             -------------------------CCceeecCCcccCHHHHHHhchHHhCCHHHHHHHHHHHcccccccccCceecCCC
Confidence                                     22222  34678888889999999999999999999999999999999999995 


Q ss_pred             CCHHHHHHHHHHHHHcCCceEEEEeeccccc
Q psy1689         514 INYAKMSSMHFHGWKLGLKTGMYYLRTKPAA  544 (998)
Q Consensus       514 ~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~  544 (998)
                      .+.++|.++|++||++|||| +||+|+++..
T Consensus       726 ~t~~~l~~~y~~Awk~GlKt-~yY~R~~s~~  755 (764)
T PRK07088        726 YKAKQILNLYIEAWKQGVKT-IYYVRNKSLE  755 (764)
T ss_pred             CCHHHHHHHHHHHHHcCCCE-EEEEecCCcc
Confidence            69999999999999999999 6999998764

>PRK12364 ribonucleotide-diphosphate reductase subunit alpha; Provisional

Probab=100.00  E-value=1.6e-105  Score=983.60  Aligned_cols=431  Identities=34%  Similarity=0.585  Sum_probs=399.3

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcC--Cce
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESD--AQW  146 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d--~~W  146 (998)
                      +....|.++|+... ...++|+|+||+|+||++|||||++||++|+++|++.+|++++|+||+|||+||++|++|  ++|
T Consensus       367 sG~vp~lk~~~~~~~~v~QgG~RrGA~~vyL~~wH~DI~~FL~~K~~~g~e~~r~~~l~~~v~ipD~Fm~~v~~~~~~~w  446 (842)
T PRK12364        367 GGVIRWIKLANDTAVAVDQLGMRQGAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMVRDDINQSW  446 (842)
T ss_pred             CChHHHHHHHHHHHHHHHhCCcCCCceeEEEeCCCccHHHHHHHhccCCchhhhhhhcchhheeCHHHHHHHHhCCCCce
Confidence            34568888888775 456778999999999999999999999999999999889999999999999999999996  899


Q ss_pred             eeeCCCCCC-----CcchhhchhHHHHHHHHHHcC-cceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCc
Q psy1689         147 SLMCPNTCR-----GLSDSWGEKFDDLYKKYEAEG-KFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGT  220 (998)
Q Consensus       147 ~Lf~P~~~~-----~L~~~yg~~F~~~Y~~~e~~g-~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~  220 (998)
                      +||+|++++     +|.++||++|+++|.++++++ ..+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+
T Consensus       447 ~Lf~P~~~~~~~g~~l~~~yg~~f~~~Y~~~~~~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~N~~~~~~~~g~  526 (842)
T PRK12364        447 YLFCPHEILTVKGYALEDYYGEEWEKRYLDCVNDARISKRSIPIKDLVRLILKSAVETGTPFTFNRDTVNRANPNKHKGM  526 (842)
T ss_pred             EeecccccccccccchhhhcccHHHHHHHHHHhcccceeEEEEHHHHHHHHHHHHHHhCCCeeEehHHHhhcCCCCcCCe
Confidence            999999998     899999999999999999876 46799999999999999999999999999999999999999999


Q ss_pred             eeecCCccceecccCC-----------------------CCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHH
Q psy1689         221 IKCSNLCTEIVEYTSK-----------------------DEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLN  277 (998)
Q Consensus       221 I~~sNpC~EI~l~~~~-----------------------~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD  277 (998)
                      |++||||+||+||++|                       +++++|||+||||++|+.     ||++.|+++|+++||+||
T Consensus       527 I~~SNlC~EI~q~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~CNL~SinL~~~~~-----~d~~~l~~~v~~~vr~LD  601 (842)
T PRK12364        527 IYCSNLCTEIAQNMSAIETVSTEIETEDGDTVVVTTTRPGDFVVCNLASLSLGNIDL-----EDEEELEEVVRTVVRALD  601 (842)
T ss_pred             eEEecCcccccccCCccccccccccccccccccccccCCCCeeEEEcHHHHhhcccc-----ccHHHHHHHHHHHHHHHH
Confidence            9999999999988643                       578899999999999853     899999999999999999


Q ss_pred             HhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q psy1689         278 KIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEG  357 (998)
Q Consensus       278 ~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~  357 (998)
                      +|||.+.||+|+++++|+++|+||||+|||||+|+++|++|+|+||++|+++|||+|+++|++||++||+|+|+||.|++
T Consensus       602 nVID~~~yp~~~~~~~n~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~E~G~~~~f~~  681 (842)
T PRK12364        602 NVIDLNFYPVPYAQITNKRYRSIGLGVSGYHHALAKNGIRWESEEHLEFADRVFERINYAAIKASMEIAKEKGAYGYFEG  681 (842)
T ss_pred             HHHhcCCCchHHHHHHHHhccccccchHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeC
Q psy1689         358 SPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN  437 (998)
Q Consensus       358 S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn  437 (998)
                      |+|++|.+ |+.|+..   ..+|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+++|.+..         
T Consensus       682 S~~~~g~~-~~~~~~~---~~~W~~L~~~i~~~GlRNs~l~AiaPT~S~S~i~g~s~gieP~~~~~~~~~~---------  748 (842)
T PRK12364        682 SDWQTGAY-FRKRGYT---SEEWQRLAREVAENGMRNAYLLAVAPTSSTSIIAGTTAGVDPVMKRYFLEEK---------  748 (842)
T ss_pred             Chhhccch-hhccCcc---hhhHHHHHHHHHHhCcchhheeccCCcHHHHHHcCCCCccCcchHhHHHHhh---------
Confidence            99999987 5655433   3589999999999999999999999999999999999999999998776542         


Q ss_pred             hhHHHHHHHcCCCcHHHHHHHhhcCCcc--cccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-C
Q psy1689         438 HHLLRDLVELGLWDDNMKDQLIVNNGSI--QDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-I  514 (998)
Q Consensus       438 ~~l~~~L~~~g~~~~~~~~~i~~~~Gsv--~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~  514 (998)
                                              .|++  +.+|.+|++.+++|+|||||+|++||+|+|++|||||||||+|||+|+ .
T Consensus       749 ------------------------~~~~~~~~~~~l~~~~~~~y~tA~ei~~~~~I~~~A~~Q~~IDqsiS~nl~~~~~~  804 (842)
T PRK12364        749 ------------------------KGALMPRVAPELSDKTFWLYKNAHLIDQKWSIRAAGVRQRHIDQAQSVNLYITNEF  804 (842)
T ss_pred             ------------------------cCCcccccCccCCHHHHHHhccHhcCCHHHHHHHHHHHhccchhhccCceecCCCC
Confidence                                    1121  235788999999999999999999999999999999999999999996 6


Q ss_pred             CHHHHHHHHHHHHHcCCceEEEEeecccc
Q psy1689         515 NYAKMSSMHFHGWKLGLKTGMYYLRTKPA  543 (998)
Q Consensus       515 t~~~i~~~~~~Awk~GlKt~~yY~R~~~~  543 (998)
                      +.++|.++|++||++|||| +||+|+++.
T Consensus       805 t~~~l~~~y~~Awk~GlKt-~yy~R~~~~  832 (842)
T PRK12364        805 TMRQVLDLYLLAWEEGVKT-IYYVRSKSL  832 (842)
T ss_pred             CHHHHHHHHHHHHHcCCCE-EEEEccCCc
Confidence            9999999999999999999 799999775

>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=4e-105  Score=958.44  Aligned_cols=432  Identities=25%  Similarity=0.429  Sum_probs=395.1

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++++... ...++|+|+||+|+||++|||||++||++|+++|++..|++++|+||+|||+||++|++|++|+|
T Consensus       220 sGvvp~mk~~d~~~~~v~QgG~RrGA~avyL~~wHpDI~~FL~~K~~~gde~~r~~~l~~~v~ipD~Fme~v~~d~~w~L  299 (699)
T PRK07632        220 KGVLPVAKLLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFELAKEGKDFYM  299 (699)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCccccceeEEEeCCCccHHHHHHHhccccchhhHHHhcchhheecHHHHHHHHcCCCeEE
Confidence            34568888888775 34567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCcchhhch-----hHHHHHHHHHHcCc-ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCcee
Q psy1689         149 MCPNTCRGLSDSWGE-----KFDDLYKKYEAEGK-FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIK  222 (998)
Q Consensus       149 f~P~~~~~L~~~yg~-----~F~~~Y~~~e~~g~-~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~  222 (998)
                      |+|+++   .+.||+     +|+++|+++++++. .+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|+
T Consensus       300 f~P~~~---~~~yG~~~~~~~~~~~Y~~~~~~~~i~~~~I~AreL~~~I~~~~~etG~Pyi~f~D~~N~~np~~~~G~I~  376 (699)
T PRK07632        300 FAPHTV---YKEYGVTLDDIDLEEMYDDLVANPNVKKKKKNAREMLNKIAQTQLQSGYPYLMFKDNANKVHPNSNIGQIK  376 (699)
T ss_pred             ECCccc---hhhcCcccccchHHHHHHHHHhcCCeeecccCHHHHHHHHHHHHHHhCCCeEEeHHHHhhcCCCCCCCcEE
Confidence            999976   566776     69999999998865 478999999999999999999999999999999999999999999


Q ss_pred             ecCCccceecccC---------CCCc---ceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCc-HHH
Q psy1689         223 CSNLCTEIVEYTS---------KDEV---AVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYP-VEE  289 (998)
Q Consensus       223 ~sNpC~EI~l~~~---------~~~~---~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p-~~e  289 (998)
                      +||||+||+|++.         .+++   .+||||||||++|+++       +.|+++|+++||+||+|||.+.|| +|+
T Consensus       377 ~SNlC~EI~~~~~~s~~~~~~~~~~~g~~~~CNLgSiNL~~~v~~-------~~l~~~v~~avr~LdnViD~~~~p~~p~  449 (699)
T PRK07632        377 MSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMES-------KKFRDSVHSGMDALTVVSDVANIQNAPG  449 (699)
T ss_pred             ecCCcccccccCCccccccccccccccccceeecchhhHHHhccc-------chHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence            9999999998752         2233   4999999999999863       579999999999999999999887 999


Q ss_pred             HHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCcCccCccccc
Q psy1689         290 ARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYD  368 (998)
Q Consensus       290 ~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G-~f~~f~~S~~~~G~l~~d  368 (998)
                      ++++|+++|+||||+|||||+|+++|++|+|+||++|+++||+.|+++|++||++||+|+| +||.|++|+|++|.+ |+
T Consensus       450 ~~~~n~~~R~IGLGvmGLad~La~~gi~Y~S~eA~~~~~~ife~i~~~A~~aS~eLAkE~G~~f~~f~~S~~~~G~~-f~  528 (699)
T PRK07632        450 VRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANTFFMMMNFYSIERSMEIAKERGETYQDFEKSDYANGKY-FE  528 (699)
T ss_pred             HHHHhhccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccCcChhhccch-Hh
Confidence            9999999999999999999999999999999999999999999999999999999999999 999999999999997 66


Q ss_pred             ccCC---CC--------------CCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEcccc
Q psy1689         369 MWGV---TP--------------TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG  431 (998)
Q Consensus       369 ~~~~---~p--------------~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G  431 (998)
                      .|..   .|              ...++|++|+++|++||+|||+++|||||||||+|+|+|+||||++++++.|...  
T Consensus       529 ~~~~~~~~~~~~~v~~~~~~~~~~~~~dW~~L~~~i~k~GlRNs~l~AiAPTgSiS~i~g~s~siePi~s~i~~r~~~--  606 (699)
T PRK07632        529 KYTTQDFEPKFEKVRELFEGMHIPTKEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYG--  606 (699)
T ss_pred             hhhhcccchhhhhhhhhhcccCCCchhhHHHHHHHHHHhCcccccccccCCchHHHHHhCCCccHHHHHHHHHhhhcC--
Confidence            5531   11              2467999999999999999999999999999999999999999999998876531  


Q ss_pred             ceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEee
Q psy1689         432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYM  511 (998)
Q Consensus       432 ~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l  511 (998)
                                                   .+++++.+|.+|++.+++|+|||||+|++||+|+|++|||||||||+|||+
T Consensus       607 -----------------------------~~~~~~~~p~l~~~~~~~y~tA~ei~~~~~I~~~A~~Q~~IDQsiS~tl~~  657 (699)
T PRK07632        607 -----------------------------NAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYV  657 (699)
T ss_pred             -----------------------------CCCceeeCccCCHHHHHHhccHhhCCHHHHHHHHHHHcccchhhhcCceec
Confidence                                         245667789999999999999999999999999999999999999999999


Q ss_pred             cC-CCHHHHHHHHHHHHHcCCceEEEEeeccccc
Q psy1689         512 AE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAA  544 (998)
Q Consensus       512 ~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~  544 (998)
                      ++ .|.++|.++|++||++|||| +||+|+++..
T Consensus       658 ~~~~t~~dl~~~y~~Awk~GlKt-iYY~Rt~~~~  690 (699)
T PRK07632        658 NSEISTRELARLYVYAHHKGLKS-LYYTRNKLLS  690 (699)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCe-EEEeeccccc
Confidence            96 59999999999999999999 9999997765

>PRK08115 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=1.4e-104  Score=954.93  Aligned_cols=461  Identities=25%  Similarity=0.353  Sum_probs=406.6

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhc-----------CCccc-----------------
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKN-----------TGKEE-----------------  120 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~-----------~g~~~-----------------  120 (998)
                      +....|.++|+.+. ...++|+||||+|+||++|||||++||++|++           .|++.                 
T Consensus       241 SG~Vsfm~~fd~~~~~V~QGG~RRGA~mv~L~~wHPDI~eFI~aK~~~~~~~~~l~~n~gde~~r~~a~ek~~~~~ls~~  320 (858)
T PRK08115        241 SGSVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDILEFIISKMQNPRILRYLLENTEDEQIKRLVKEKLKFTPLSEV  320 (858)
T ss_pred             CCeecHHHHHHHHHHHHHhCCCcccceEEEecCCcccHHHHHHhccccchhhhhhhcccccHhhhhhhhhhhcccccchh
Confidence            44568888888775 44567899999999999999999999998853           33331                 


Q ss_pred             -------------------------------------------ccccccceeeecCHHHHHHHHcCCceeeeCCCCCC--
Q psy1689         121 -------------------------------------------FRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCR--  155 (998)
Q Consensus       121 -------------------------------------------~r~~~l~~sV~I~D~Fm~~v~~d~~W~Lf~P~~~~--  155 (998)
                                                                 .+++++|+||+|||+||++|++|++|+||+|+...  
T Consensus       321 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~lk~~~~~~~~~~~~l~n~NiSV~itD~FMeaVe~d~~w~L~~P~~~~~~  400 (858)
T PRK08115        321 EEAMYQAIVNYKNIEGQGGFDTKVIKEAENKLRTGGTYTVNNPEFLTGANISVCLTKEFMEAVENDEEYELRFPDVENYT  400 (858)
T ss_pred             hhhhhhhhhcccccccccccchhhhhhhhhhhccccccccccccccccceeEEEECHHHHHHHHcCCCEEEECCcccccc
Confidence                                                       24567999999999999999999999999997642  


Q ss_pred             -CcchhhchhHHHH--HHHHHHcC---cceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCC-ceeecCCcc
Q psy1689         156 -GLSDSWGEKFDDL--YKKYEAEG---KFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLG-TIKCSNLCT  228 (998)
Q Consensus       156 -~L~~~yg~~F~~~--Y~~~e~~g---~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g-~I~~sNpC~  228 (998)
                       .+.+.||++|.+.  |.+++..+   +.+++|+||+||++|++++|+||+|||+|+|++|++||+++.| +|++||||+
T Consensus       401 ~~~~~~Y~~~~~~~gd~~~~e~~g~~~~v~~~I~AReLw~~I~~~a~etGePgI~F~D~iNr~nn~~~~g~~I~aTNPCg  480 (858)
T PRK08115        401 EEEMEIYNEEWHEVGDVREWEKMGYPVRTYRKIKAKELWNLINICATYSAEPGIFFIDNANEMTNAKAYGQKVVATNPCG  480 (858)
T ss_pred             hhhHhhhccccccchhHHHHhhcccccceeEEEcHHHHHHHHHHHHHHhCCCeEEEHHHhhhcCCccccCCeeeecCccc
Confidence             3556788888766  67777766   5679999999999999999999999999999999999998888 899999999


Q ss_pred             ceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchHH
Q psy1689         229 EIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLA  308 (998)
Q Consensus       229 EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLa  308 (998)
                      ||++++    +++|||+||||++|++.+++.|||+.|+++|+++|||||+|||.+.||+|++++.++++|+||||+||||
T Consensus       481 EqpL~p----~~sCNLgSINL~kfV~~~~~~fD~~~L~~~V~~avRfLDnVID~n~yPl~e~~~~~~~~R~IGLGvmGLA  556 (858)
T PRK08115        481 EQPLAP----YSVCNLAAINLANMADKETKTVDYEKLKRTVEVGVRMQDNVIDATPYFLEENKKQALGERRVGLGVMGLH  556 (858)
T ss_pred             cccCCC----CcccchHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhhcCCeeechhhHH
Confidence            987653    6899999999999997545689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHH
Q psy1689         309 DLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA  388 (998)
Q Consensus       309 d~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~  388 (998)
                      |+|+++|++|+|+||++++++||+.|+++|+++|++||+|+|+||.|++|+|++|.++.+.|...+.....|++|+++|+
T Consensus       557 D~L~~lgIpYdSeEA~~l~~~I~e~I~~~A~~AS~eLAkErG~FP~f~gs~~~~~~~~r~~~~~~~~~~~~~~~Lre~I~  636 (858)
T PRK08115        557 DLLIYCETVYGSEEGNQLVDQIFETIATTAYRTSIELAKEKGSFPFLVGQTEEETAKLREAFINTGYMKKMPEDIREDIL  636 (858)
T ss_pred             HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCchhhhhHHHhhhhhccccccCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999987655544322212335899999999


Q ss_pred             hcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCccccc
Q psy1689         389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDI  468 (998)
Q Consensus       389 ~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~  468 (998)
                      +||+|||++||||||||||+|+|+|+||||+|++.|.|++..|+|+++|+++++.+.+.+.+                  
T Consensus       637 k~GiRNS~ltaIAPTGSiS~Iag~SsGIEPifs~~y~R~~~~G~f~~vn~~~~~~~l~~~~~------------------  698 (858)
T PRK08115        637 KYGIRNSHLLTVAPTGSTGTMVGVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEYLDKHPE------------------  698 (858)
T ss_pred             HhCcchhceeeeCChHHHHHHhCCCcccCcCeeeeEEEEeccCceEEEchHHHHHHHHhCCC------------------
Confidence            99999999999999999999999999999999999999999999999999987766443211                  


Q ss_pred             CCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeecccccccc
Q psy1689         469 EGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI  547 (998)
Q Consensus       469 ~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~  547 (998)
                       ..|+++..+|+||+||+|++||+|||++|+|||||||+|||+|+ .++++|.++|++||++||||+|||++.++..++.
T Consensus       699 -~~~~~l~~~F~TA~eI~p~~hI~mqAa~Qk~VDqsISkTInlP~~at~edV~~iY~~Awk~GlKGiTvYrdGSr~~qvL  777 (858)
T PRK08115        699 -ADENHLPEWFISAMELKPEAHADVQCIIQRWVDSSLSKTVNAPKGYTVEQVQKVYERLYRGGAKGGTVYVDGSRDAQVL  777 (858)
T ss_pred             -CCchhHHHhcccHhhCCHHHHHHHHHHHccccchhhcCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCccceee
Confidence             13566677999999999999999999999999999999999996 5899999999999999999999999999988887


Q ss_pred             chhhhH
Q psy1689         548 QFTIDK  553 (998)
Q Consensus       548 ~~~~~~  553 (998)
                      ....+.
T Consensus       778 ~~~~~~  783 (858)
T PRK08115        778 TLKAEE  783 (858)
T ss_pred             eecccc
Confidence            655443

>PRK07187 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=7.1e-104  Score=950.28  Aligned_cols=434  Identities=24%  Similarity=0.394  Sum_probs=388.8

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++++... ...++|+|+||+|+||++|||||++||++|+++|++..|++++|+||+|||+||++|++|++|+|
T Consensus       221 sGvvp~mk~~~~~~~~v~QgG~RrGA~~vyL~~wHpDI~eFL~~K~~~gde~~r~~~l~~~v~ipD~Fm~~v~~d~~w~L  300 (721)
T PRK07187        221 TGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPDVLTFLDTKRENADEKIRIKSLSLGLVIPDITFELAKENKDMAL  300 (721)
T ss_pred             CChHhHHHHHHHHHHHHHcCCcccCceEEEEeCCCccHHHHHHHhccccchhhhhccchHHhcccHHHHHHHHcCCCeEe
Confidence            34578888887774 55677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCcchhhchhHH-----HHHHHHHHcCc-ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCcee
Q psy1689         149 MCPNTCRGLSDSWGEKFD-----DLYKKYEAEGK-FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIK  222 (998)
Q Consensus       149 f~P~~~~~L~~~yg~~F~-----~~Y~~~e~~g~-~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~  222 (998)
                      |+|+++   .++||++|+     +.|.++++++. .+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|+
T Consensus       301 f~P~~~---~~~yg~~~~~~~~~~~Y~~~~~~~~i~k~~V~AreL~~~I~~~~~etG~Pyi~f~D~iNr~np~~~~G~I~  377 (721)
T PRK07187        301 FSPYDI---KREYGKPMSDISITEEYYNLLANPAIKKTYISARKLFQTIAELHFESGYPYLLFDDTVNKRNPHAKKGRIV  377 (721)
T ss_pred             ECcchh---hHhhCcchhhhhhHHHHHHHHhccccceeEecHHHHHHHHHHHHHHHCCCeEEEhHHHhhcCCcccCCcee
Confidence            999875   578998664     46888887665 456799999999999999999999999999999999999999999


Q ss_pred             ecCCccceecccCCCC------------cceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCC-cHHH
Q psy1689         223 CSNLCTEIVEYTSKDE------------VAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFY-PVEE  289 (998)
Q Consensus       223 ~sNpC~EI~l~~~~~~------------~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~-p~~e  289 (998)
                      +||||+||+|++.|++            +++||||||||++|+.+      .++|+++|+++||+||+|||.+.+ |+|+
T Consensus       378 ~SNlC~EI~q~~~p~~~~~~~~~~~~g~~~~CNLgSiNL~~~v~~------~~~~~~~v~~avR~LDnVId~~d~~~~p~  451 (721)
T PRK07187        378 MSNLCSEIAQVSTPSTFNEDLSFKKIGEDICCNLGSLNIAKAMES------GPEFEQLIYTSIRALDRVSRVSDLSCAPS  451 (721)
T ss_pred             eccccccccccCCchhcccccccccCCCcceeeCHHHHHHHHhcc------hhhHHHHHHHHHHHHHHHhhhhccCccHH
Confidence            9999999999987753            68999999999999852      257889999999999999999865 7899


Q ss_pred             HHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccc
Q psy1689         290 ARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDM  369 (998)
Q Consensus       290 ~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~  369 (998)
                      ++++|+++|+||||+|||||+|+++||+|+|+||++++++||+.|+++|++||++||+|+|+||.|++|+|++|.+ |+.
T Consensus       452 ~~~~n~~~R~IGLGvmGlad~La~lgi~Y~S~eA~~~~~~i~e~i~~~A~~aS~eLAkErG~fp~f~~S~~~~G~~-~~~  530 (721)
T PRK07187        452 IEKGNAANHAVGLGAMNLHGFLATNHIYYDSKEAVDFTDLFFYTMAYYAFKASNQLAKEKGAFAGFELSKYADGSY-FDK  530 (721)
T ss_pred             HHHHHHhcCcccchHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhccch-hhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999986 232


Q ss_pred             --------cCC--------------CCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEE
Q psy1689         370 --------WGV--------------TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR  427 (998)
Q Consensus       370 --------~~~--------------~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~  427 (998)
                              |..              .....++|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|+
T Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~L~~~i~k~GlRNs~l~AiAPTgSiS~i~g~s~gIEP~~s~~~~R~  610 (721)
T PRK07187        531 YTKEDAKKWTPKTAKVKELLQKYGVTIPTQADWQELVEDIKKTGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRK  610 (721)
T ss_pred             hhhccccccCcchhhhhhhhhhccccccchhhHHHHHHHHHHhCcccceeeeeCCcchHHHHhCCCcchhHhhhhhheee
Confidence                    321              1113578999999999999999999999999999999999999999999999998


Q ss_pred             ccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhc-ccccCCChHHHHHHHHHhCCccccccc
Q psy1689         428 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY-KTVWEIPQKTVLDMAADRGAFIDQSQS  506 (998)
Q Consensus       428 ~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f-~tA~ei~~~~~I~m~a~~Q~~VDqs~S  506 (998)
                      ..++..+.+                              +.+.+|++.+++| +|||||+|++||+|+|++|||||||||
T Consensus       611 ~~~~~~~~~------------------------------~~~~l~~~~~~~y~~tA~eI~~~~~I~~~A~~Qk~IDqsiS  660 (721)
T PRK07187        611 EGKLGRIYV------------------------------PAYKIDQDNYAYYERGAYEVGPKPIIDIVAAAQKHVDQAIS  660 (721)
T ss_pred             ccCCceEEc------------------------------ccccCCHHHHHHHhhhHHhcCHHHHHHHHHHHhhhcccccc
Confidence            654332221                              1234677778888 999999999999999999999999999


Q ss_pred             eeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeeccccc
Q psy1689         507 LNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAA  544 (998)
Q Consensus       507 ~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~  544 (998)
                      +|||+++ ++.++|.++|++||++|||| +||+|++...
T Consensus       661 ~tl~~~~~~t~~dl~~~y~~Awk~GlKt-~YY~Rt~~~~  698 (721)
T PRK07187        661 LTLFMTDQATTRDLNKAYIQAFKQKCAS-IYYVRVRQDV  698 (721)
T ss_pred             ceeeCCCCCCHHHHHHHHHHHHHcCCCE-EEEEeehhhh
Confidence            9999996 58999999999999999999 8999996544

>TIGR02504 NrdJ_Z ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent

Probab=100.00  E-value=3.5e-101  Score=922.03  Aligned_cols=501  Identities=28%  Similarity=0.425  Sum_probs=444.4

Q ss_pred             eEEEecCCcccHHHHHHhhccCcchhhhhhccccccccCHHHHHHhhcCCcEeeeCCCCCCC--cchhhhhhHHHHHHHH
Q psy1689           5 FAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRG--LSDSWGEKFDDLYKKY   82 (998)
Q Consensus         5 ~~vyl~~wH~di~~fl~lk~~~g~E~~r~~~l~~~~~i~d~f~~rv~~~~~~tlf~P~~~~~--L~~s~g~~F~~lY~~~   82 (998)
                      .++|+-...-+++.+.+.=+    |.-++...--|+.++   +.+++..+..       .++  -..+....|.++|+..
T Consensus        77 ssCfv~~v~Ds~~~I~~~~~----~~a~i~k~GGGvG~~---~s~iRp~G~~-------i~g~~g~ssG~v~~~~~~d~~  142 (586)
T TIGR02504        77 SACFVLPVEDDMESIFEAAK----EAALIFKRGGGVGYN---FSTLRPKGAK-------VSGTGGVASGPVSFMRVFDAA  142 (586)
T ss_pred             eeeECCCCCCCHHHHHHHHH----HHHHHHhcCCceeec---ccccCCCCCc-------cCCCCCCCCCchhHHHHHHHH
Confidence            45555444556777665544    666777777777765   4455544431       111  1235567888888887


Q ss_pred             h-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceeeeCCCCCCCcchhh
Q psy1689          83 E-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSW  161 (998)
Q Consensus        83 E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~Lf~P~~~~~L~~~y  161 (998)
                      . ...++|+||||+|+||++|||||++||++|+++++    .+++|+||+|||+||++|++|++|+||+|.++..+.++|
T Consensus       143 ~~~v~qgG~RrgA~~~~l~~~HpDi~~Fi~~K~~~~~----~~~~n~sv~i~D~Fm~~v~~d~~w~L~~p~~~~~~~~~y  218 (586)
T TIGR02504       143 AGVIKQGGTRRGAQMGILDVWHPDIEEFIEAKKKEGK----LTNFNISVGVTDAFMEAVEADEEYKLRNPRTGEEIEELA  218 (586)
T ss_pred             HHHHHcCCcccCceEEEEeCCCchHHHHHHhcccccc----hhcceehcccCHHHHHHHHcCCCeEEECCCccccccccc
Confidence            5 44567899999999999999999999999987664    679999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCccceecccCCCCcce
Q psy1689         162 GEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAV  241 (998)
Q Consensus       162 g~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~EI~l~~~~~~~~~  241 (998)
                      |  |       +..+..+++|+||+||++|++++|+||+|||+|+|++|+++|+++.|+|++||||+||+|++    .++
T Consensus       219 ~--~-------~~~~~~~~~v~Arel~~~I~~~~~~tGePgi~f~D~~N~~~~~~~~~~i~~tNpC~Ei~l~~----~~~  285 (586)
T TIGR02504       219 E--L-------DPKNKVYKEVPARELWDKIVEAAWKSAEPGLLFIDTINKWHPCPYGGRINATNPCGEQPLLP----YES  285 (586)
T ss_pred             c--c-------ccccceeeEEEHHHHHHHHHHHHHHhCCCeEEEhhhhhhcCCCccCCceeeccCCccccccC----Ccc
Confidence            8  2       34566789999999999999999999999999999999999999999999999999999874    358


Q ss_pred             eeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCCCCCH
Q psy1689         242 CNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCN  321 (998)
Q Consensus       242 CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~  321 (998)
                      |||+||||++|+.+....||++.|+++|+++||+||+|||++.||+|++++.+++.|+||||+|||||+|+++|++|+|+
T Consensus       286 CnL~SiNL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~lgi~y~S~  365 (586)
T TIGR02504       286 CNLGSINLAKFVKNGFGSFDFERLREVVRLATRFLDNVIDLNRFPLPEIAEATKKTRRIGLGIMGLADLLIKLGIPYDSE  365 (586)
T ss_pred             cchHHhhHHHHhhCCCCccCHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHhcCCccccchhHHHHHHHHcCCCcCCH
Confidence            99999999999986544699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccC
Q psy1689         322 ESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPM  401 (998)
Q Consensus       322 ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaia  401 (998)
                      ||++++++||+.|+++|+++|++||+|+|+||.|++|+|++|.+++..+   +  ...|++|++.+++||+|||++||||
T Consensus       366 ea~~~~~~i~~~i~~~a~~aS~~LA~e~G~fp~f~~s~~~~g~~~~~~~---~--~~~~~~L~~~i~~~G~RNs~l~aia  440 (586)
T TIGR02504       366 EARAFAEELMAFIADAAYRASAELAKERGPFPLFEASRYEMGRAMGARI---P--SALPAELREAIAKYGIRNAQLTTIA  440 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhccccccccc---c--ccChHHHHHHHHHhCCCccceeeeC
Confidence            9999999999999999999999999999999999999999999873322   2  2369999999999999999999999


Q ss_pred             CccchhhhcCCcccccccccceEEEEcccc-ceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhcc
Q psy1689         402 PTASTAQILGNNESFEPYTSNIYSRRVLSG-EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYK  480 (998)
Q Consensus       402 PTgs~S~i~G~S~gieP~~a~~y~R~~~~G-~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~  480 (998)
                      ||||||+++|+|+||||+|+++|.|++..| ++.++|+++.+.|++.|+++++++..+. .+|++++++. |++++.+|+
T Consensus       441 PTgtiS~i~g~S~gieP~~a~~y~r~~~~g~~~~~~n~~l~~~l~~~g~~~~~~~~~~~-~~gs~~~~~~-p~~~~~~f~  518 (586)
T TIGR02504       441 PTGTISLIAGTSSGIEPVFALVYFRNVTVGGELLEVNPIVELALRELGYYSDQIVKYVD-EKGTVEGAPG-PEELPKVFV  518 (586)
T ss_pred             CCchhhhhcCCCCccccchhhhhheeeccCCcEEEeCHHHHHHHHHcCCChHHHHHHHH-cCCCcccCCC-chhHHhhcc
Confidence            999999999999999999999999998876 8999999999999999999999988654 5799999999 999999999


Q ss_pred             cccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeecccc
Q psy1689         481 TVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPA  543 (998)
Q Consensus       481 tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~  543 (998)
                      ||+||+|++||+|+|++|||||||||+|||+|+ .+.++|.++|++||++||||+|||...++.
T Consensus       519 tA~di~~~~~i~~~a~~Q~~vD~siS~ti~~~~~~~~~~v~~~y~~A~~~GlK~it~yR~~s~~  582 (586)
T TIGR02504       519 TANDVSPEDHVLMQAAIQPWVDSSISKTINMPSDATVEDVKAAYLLAWKLGLKGITVYRDGSRS  582 (586)
T ss_pred             CcccCCHHHHHHHHHHHcCcccccccCeeecCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCcC
Confidence            999999999999999999999999999999996 589999999999999999999999444333

This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ.

>PRK06556 vitamin B12-dependent ribonucleotide reductase; Validated

Probab=100.00  E-value=3.2e-101  Score=940.73  Aligned_cols=506  Identities=22%  Similarity=0.317  Sum_probs=432.3

Q ss_pred             eEEEecCCcccHHHHHHhhccCcchhhhhhccccccccCHHHHHHhhcCCcEeeeCCCCCCCcchhhhhhHHHHHHHHh-
Q psy1689           5 FAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYE-   83 (998)
Q Consensus         5 ~~vyl~~wH~di~~fl~lk~~~g~E~~r~~~l~~~~~i~d~f~~rv~~~~~~tlf~P~~~~~L~~s~g~~F~~lY~~~E-   83 (998)
                      .|.-+++ .-+++..+++=+    |.-++...--|+.++   +.+++..+...  +-    +-..+....|.++|+... 
T Consensus       151 sCFvl~v-~Dsle~I~~~~~----~~a~i~K~GGGvG~n---fS~LRp~G~~i--s~----gG~sSGpvsFmki~D~~~~  216 (953)
T PRK06556        151 ACFILSV-DDSMESILNWYK----EEGMLFKGGSGTGTN---LSRIRSSKELL--SG----GGTASGPVSFMRGADASAG  216 (953)
T ss_pred             eEEeCCC-CCCHHHHHHHHH----HHHHHHhcCCcEEEe---ccccCCCCCcC--CC----CCCCCChhhHHHHHHHHHH
Confidence            3333454 456777777755    566666655555533   34555544311  11    112355678999988886 


Q ss_pred             hhcccc-ccccceEEEecCCcccHHHHHHhhhcCCcc-------------------cccccccceeeecCHHHHHHHHcC
Q psy1689          84 AEGLVY-FRPGAFAIYLEPWHGDIFDFLELKKNTGKE-------------------EFRARDLFYGLWIPDEFMRRVESD  143 (998)
Q Consensus        84 ~~~~~g-~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~-------------------~~r~~~l~~sV~I~D~Fm~~v~~d  143 (998)
                      ...++| +||||.|+||++|||||++||++|......                   ..+.+|+|+||+|||+||++|++|
T Consensus       217 ~ikqGG~tRRGA~mv~L~vdHPDI~eFI~~K~~e~~k~~~l~~~~~~~d~~~~~~~~v~~~n~N~SV~vtD~FM~aV~~d  296 (953)
T PRK06556        217 TIKSGGATRRAAKMVILDVDHPDIEEFIETKAKEEDKIRALRDAGYDMDLGGEAYSSVQYQNANNSVRVSDEFMRAVEND  296 (953)
T ss_pred             HHHcCCCccCcceEEEecCCCccHHHHHHhcccchhhhhhhhhcccccccccccccccccccccceEEECHHHHHHHHcC
Confidence            445677 599999999999999999999999753210                   014578899999999999999999


Q ss_pred             CceeeeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceee
Q psy1689         144 AQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKC  223 (998)
Q Consensus       144 ~~W~Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~  223 (998)
                      ++|.|++|.                      +|++.++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++
T Consensus       297 ~~~~L~~~~----------------------~g~v~~~v~AreLw~~I~~~aw~tGdPgi~F~D~iNr~~~~~~~g~I~a  354 (953)
T PRK06556        297 GEFGLRART----------------------DGEVIETVDAKELFRKIAEAAWECADPGIQYDDTINDWHTCPESGRINA  354 (953)
T ss_pred             CCeEEeccc----------------------cCceeeeeeHHHHHHHHHHHHHHhCCCeEEechhhhhhCCCcccCceEe
Confidence            999999875                      4667899999999999999999999999999999999999999999999


Q ss_pred             cCCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccc
Q psy1689         224 SNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIG  303 (998)
Q Consensus       224 sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLG  303 (998)
                      ||||+||+++..    .+|||+||||.+|+.++ +.||++.|+++|++++++||++||.+.||+|++++.++++|+||||
T Consensus       355 SNpC~E~~l~~~----~sCNLgSINL~~fv~~~-~~fD~~~l~~aV~~avr~LD~vId~~~yP~~~i~~~~~~~R~IGLG  429 (953)
T PRK06556        355 SNPCSEYMFLDN----SSCNLASLNLMKFLRDD-GTFDVESFRHAVELVITAMEISICFADFPTEKIARNTRAFRQLGLG  429 (953)
T ss_pred             ecCccccccCCc----ccccceeeEHHHhhccc-CccCHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHhccchhhh
Confidence            999999987642    47999999999999753 4799999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCcc-Cccc--ccccC------CCC
Q psy1689         304 VQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQ-GILQ--YDMWG------VTP  374 (998)
Q Consensus       304 v~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~-G~l~--~d~~~------~~p  374 (998)
                      +|||||+|+++||+|+|+||++++++||+.|+++|+++|++||+|+||||.|++|++.. +.+.  ++.+.      ..|
T Consensus       430 vmGlad~L~~lGi~YdS~ea~~la~~I~~~m~~~A~~aS~eLA~e~G~Fp~f~~s~~~~~~v~~~h~~~~~~~~~~~~~~  509 (953)
T PRK06556        430 YANLGALLMATGLPYDSDGGRALAAAITSLMTGEAYRRSAELAGVVGPFEGYARNAEPHLRVMRKHAAANDAIRPLGEVD  509 (953)
T ss_pred             hhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhhhchhhhhhhhhhhhhhhccCc
Confidence            99999999999999999999999999999999999999999999999999999998654 3332  22111      111


Q ss_pred             C-----CHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCC-cccccccccceEEEE-ccccceEEeChhHHHHHHHc
Q psy1689         375 T-----DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN-NESFEPYTSNIYSRR-VLSGEFQVVNHHLLRDLVEL  447 (998)
Q Consensus       375 ~-----~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~-S~gieP~~a~~y~R~-~~~G~~~~vn~~l~~~L~~~  447 (998)
                      .     ...+|++|++.+++||+||||+|+||||||||+|+|+ |+||||+|+++|.|+ +.+|+|.++|+++.++|+++
T Consensus       510 ~~l~~~~~~~W~~l~~~~~~~G~RNa~~taIAPTGTiS~i~g~~SsGIEP~fa~v~~rk~~~~G~~~~vN~~~~~~L~~~  589 (953)
T PRK06556        510 AALLEAAKEAWDDALELGEKNGYRNAQASVLAPTGTIGFMMDCDTTGIEPDFALVKYKKLVGGGSMKIVNQTVPRALKKL  589 (953)
T ss_pred             hhhhhhhhhhHHHHHHHHHHhCcccccceeecCchHHHHhcCCCCCCcccceeeeeeEEeccCceeEEecHHHHHHHHHc
Confidence            1     2357999999999999999999999999999999998 999999999997776 46788999999999999999


Q ss_pred             CCCcHHHHHHH--hhcCCcccccCCCChhhhhhccccc-------CCChHHHHHHHHHhCCccccccceeEeecC-CCHH
Q psy1689         448 GLWDDNMKDQL--IVNNGSIQDIEGIPQKLKDLYKTVW-------EIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYA  517 (998)
Q Consensus       448 g~~~~~~~~~i--~~~~Gsv~~~~~lp~~~k~~f~tA~-------ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~  517 (998)
                      |++++++.+.+  +..+|+++++|.||++.+.+|+||+       ||+|++||+|||++|||||||||+|||+|+ +|++
T Consensus       590 G~~~~ei~~i~~~~~~~gsv~~~p~L~~e~~~vF~tA~~~~~g~rdI~p~~hI~m~Aa~Q~fID~aiSkTvnlp~~at~e  669 (953)
T PRK06556        590 GYSEEQIEAIVEYIAEHGHIEGAPGLKPEHYAVFDCAMKPASGERSISPMGHVRMMAAVQPFLSGAISKTVNMPEDATVE  669 (953)
T ss_pred             CCCHHHHHHHHHHHHhCCCeecCCCCChHHhhhceeccccCCCCCccCHHHHHHHHHHHhhhcccccceEEEcCCCCCHH
Confidence            99999876543  4567999999999999999999999       999999999999999999999999999995 6999


Q ss_pred             HHHHHHHHHHHcCCceEEEEeeccccccccchhh
Q psy1689         518 KMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI  551 (998)
Q Consensus       518 ~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~~~~~  551 (998)
                      ||.++|++||++||||+|||+...+..++.....
T Consensus       670 dv~~~y~~Awk~GlKgit~YRdgsk~~qvL~~~~  703 (953)
T PRK06556        670 DIEEVYLEGWKLGLKALAIYRDNCKVGQPLNTSK  703 (953)
T ss_pred             HHHHHHHHHHHhCCCeEEEEcCCCcccceeeccc
Confidence            9999999999999999999988888888876543

>PRK07306 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=2.9e-101  Score=928.94  Aligned_cols=431  Identities=26%  Similarity=0.405  Sum_probs=387.7

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++++... ...++|+|+||+|+||++|||||++||++|+++|++..|++++|+||+|||+||++|++|++|+|
T Consensus       223 sGvvp~mk~~d~~~~~v~QgG~RrGA~~vyL~~wHpDI~~FL~~K~~~gde~~R~~nl~~~v~vpD~Fm~~v~~~~~w~L  302 (720)
T PRK07306        223 SGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKENADEKVRVKTLSLGVTVPDKFYELARKNEDMYL  302 (720)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCcCcceEEEEeCCCccHHHHHHHhcccccchhhhcccchhhccCHHHHHHHHcCCCeEE
Confidence            44568888888875 44577899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCcchhhchhH-----HHHHHHHHHcCc-ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCcee
Q psy1689         149 MCPNTCRGLSDSWGEKF-----DDLYKKYEAEGK-FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIK  222 (998)
Q Consensus       149 f~P~~~~~L~~~yg~~F-----~~~Y~~~e~~g~-~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~  222 (998)
                      |+|.++   .++||++|     ++.|+++++++. .+++|+||+||++|++++|+||+|||+|+|++|++||+  .|+|+
T Consensus       303 f~P~~~---~~~yG~~f~~~~~~~~Y~~~~~~~~i~~~~i~AreL~~~I~~~~~etG~Pyi~f~D~iNr~np~--~g~I~  377 (720)
T PRK07306        303 FSPYSV---EKEYGVPFNYVDITKEYDELVANPNIRKTKIKARDLETEISKLQQESGYPYIINIDTANRANPI--DGKII  377 (720)
T ss_pred             eCcchh---hhhcCccccchhHHHHHHHHhhcccceeeEeeHHHHHHHHHHHHHHhCCCeEEeHHHHHhhCCC--CCcee
Confidence            999875   57899988     678999988765 56899999999999999999999999999999999987  48999


Q ss_pred             ecCCccceecccCCC------------CcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCC-CcHHH
Q psy1689         223 CSNLCTEIVEYTSKD------------EVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNF-YPVEE  289 (998)
Q Consensus       223 ~sNpC~EI~l~~~~~------------~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~-~p~~e  289 (998)
                      +||||+||+|++.|.            +.++||||||||++|++.       ..|+++|+++||+||+|||.+. ||+|+
T Consensus       378 ~SNlC~EI~q~~~p~~~~~~~~~~~~g~~~~CNLgSINL~~~v~~-------~~~~~~v~~avR~LDnViD~~~~~p~p~  450 (720)
T PRK07306        378 MSNLCSEILQVQTPSLINDAQEYVKMGTDISCNLGSTNIVNMMTS-------PDFGRSIETMVRALTFVTDSSNIDAVPS  450 (720)
T ss_pred             ecccccccccCCCchhhccccccccCCCccEEECHHHHHHHHhcc-------ccHHHHHHHHHHHHHHHHHhhCCCCChH
Confidence            999999999987763            347999999999999863       3578999999999999999985 79999


Q ss_pred             HHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCcCccCccccc
Q psy1689         290 ARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYD  368 (998)
Q Consensus       290 ~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G-~f~~f~~S~~~~G~l~~d  368 (998)
                      +++.++++|+||||+||||++|+++||+|+|+||++|+++||+.|+++|++||++||+|+| +||.|++|+|++|.+ |+
T Consensus       451 ~~~~n~~~R~IGLGvmGla~~La~~gi~Y~S~eA~~~~~~i~e~i~y~A~~aS~eLA~ErG~~fp~f~~S~~~~G~~-f~  529 (720)
T PRK07306        451 IKHGNSQAHTIGLGAMGLHSYLAQNHIEYGSPESLEFTSIYFMLLNYWTLVASNNIARERGETFHNFEKSKYADGSY-FD  529 (720)
T ss_pred             HHHHHHhcCchhhhHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcChhhccch-hh
Confidence            9999999999999999999999999999999999999999999999999999999999999 699999999999987 56


Q ss_pred             ccCC---CC--------------CCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEcc-c
Q psy1689         369 MWGV---TP--------------TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL-S  430 (998)
Q Consensus       369 ~~~~---~p--------------~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~-~  430 (998)
                      .|..   .|              ....+|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|... .
T Consensus       530 ~~~~~~~~~~~~~v~~~~~~~~~p~~~~W~~Lr~~i~~~GlRNs~l~AiAPTgSiS~i~g~S~gIePi~s~v~~r~~~~~  609 (720)
T PRK07306        530 KYVTGDFVPKSDKVKELFKGIFIPTAADWAALRDAVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITQRIEERQEKKI  609 (720)
T ss_pred             hhhhcccCcchhhHHHhhhccCCCchhhHHHHHHHHHHhCcccccceeeCCccHHHHHhCCCCccccchhhHhhhhhhcC
Confidence            5521   11              2356899999999999999999999999999999999999999999999987632 1


Q ss_pred             cceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEe
Q psy1689         431 GEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY  510 (998)
Q Consensus       431 G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~  510 (998)
                      |.+.                               ...|.+|++.+++|+|||||+|++||+|+|++|||||||||+|||
T Consensus       610 g~~~-------------------------------~~~p~l~~~~~~~f~tA~ei~~~~~I~~~A~~Qk~VDQsiS~tl~  658 (720)
T PRK07306        610 GKIY-------------------------------YPAPGLSTETIPYYTSAYDMDMRKVIDVYAAATEHVDQGLSLTLF  658 (720)
T ss_pred             Ccee-------------------------------ccCCCCchhHHHHhCcHHhCCHHHHHHHHHHHhccchhhhcCccc
Confidence            3222                               134678888889999999999999999999999999999999999


Q ss_pred             ecCC---------------CHHHHHHHHHHHHHcCCceEEEEeecccccc
Q psy1689         511 MAEI---------------NYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN  545 (998)
Q Consensus       511 l~~~---------------t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~  545 (998)
                      +++.               +.++|.++|++||++|||| +||+|+.....
T Consensus       659 ~~~~~~~~~~~~~~~~~~~t~~~l~~~~~~Awk~GlKt-~YY~Rt~~~~~  707 (720)
T PRK07306        659 MRSTLPKGLYEWKDRTNKMTTRDLSILRNYAFNKGIKS-IYYIRTFTDDG  707 (720)
T ss_pred             cCCccccccccccccccCCCHHHHHHHHHHHHHcCCCe-EEEEeeccccc
Confidence            9853               6789999999999999999 69999977643

>PRK09102 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=3.4e-100  Score=906.85  Aligned_cols=471  Identities=32%  Similarity=0.514  Sum_probs=418.2

Q ss_pred             eEEEecCCcccHHHHHHhhccCcchhhhhhccccccccCHHHHHHhhcCCcEeeeCCCCCCCcchhhhhhHHHHHHHHh-
Q psy1689           5 FAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYE-   83 (998)
Q Consensus         5 ~~vyl~~wH~di~~fl~lk~~~g~E~~r~~~l~~~~~i~d~f~~rv~~~~~~tlf~P~~~~~L~~s~g~~F~~lY~~~E-   83 (998)
                      .++|+-.-.-+++.+.+.=+    |.-++...--|+.++   +.+++..+...    ... + ..+....|.++|+... 
T Consensus        89 ssCfl~~v~Dsle~I~~~~~----~~a~l~k~gGGvG~~---~s~iR~~Gs~I----~~~-g-~ssG~v~f~k~~d~~~~  155 (601)
T PRK09102         89 ISCFLNYVEDSLEGIVNTWN----ENVWLAKRGGGIGSY---WGNVRSIGEPI----RNN-G-KSSGIIPFIKVMDSLTL  155 (601)
T ss_pred             eeEEeCCCCCCHHHHHHHHH----HHHHHHhhCCeeeec---ccccCCCCCcc----CCC-C-CCCCHHHHHHHHHHHHH
Confidence            34454333456666655443    556666666677665   55666655411    111 2 2255678888888886 


Q ss_pred             hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceeeeCCCCCCCcchhhch
Q psy1689          84 AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGE  163 (998)
Q Consensus        84 ~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~Lf~P~~~~~L~~~yg~  163 (998)
                      ...++|+||||+|+||++|||||++||++|++.|++.+|++++|+||+|||+||++|++|++|+||+|.+          
T Consensus       156 ~i~qgg~RrGA~~~~L~~~HpDI~~Fi~~K~~~g~~~~r~~n~n~sv~i~D~FM~~v~~d~~w~L~~p~~----------  225 (601)
T PRK09102        156 AISQGSLRRGSFAVYLDIEHPEIEEFLDIRKPTGDPNRKALNLHHGVCVTDEFMEAVEDGDEWDLISPKD----------  225 (601)
T ss_pred             HHHcCCccccceEEEEeCCCcCHHHHHHHhhccCcccccccCCeeEEEECHHHHHHHHcCCCeEEEcCCC----------
Confidence            4456789999999999999999999999999999998999999999999999999999999999999974          


Q ss_pred             hHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCC--CC-ceeecCCccceeccc-----C
Q psy1689         164 KFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQN--LG-TIKCSNLCTEIVEYT-----S  235 (998)
Q Consensus       164 ~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~--~g-~I~~sNpC~EI~l~~-----~  235 (998)
                                  +...++|+||+||++|++++|+||+|||+|+|++|+++|.++  .| +|++||||+||+|++     .
T Consensus       226 ------------~~~~~~i~Arel~~~I~~~~~~tG~Pgi~f~D~~N~~~p~~~~~~G~~I~~sNpC~Ei~l~~~~~~~~  293 (601)
T PRK09102        226 ------------KSVIRTVKARDLWAKILETRIETGEPYLLFIDNVNRALPEVYKDLGLKVKASNLCSEITLPTGIDHLG  293 (601)
T ss_pred             ------------CeEEEEecHHHHHHHHHHHHHHhCCCeEEEHHHhhhhCcccccccCCeEEeeCcccceecccccccCC
Confidence                        345789999999999999999999999999999999988754  35 899999999999998     6


Q ss_pred             CCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhh--cCCC--cHHHHHHHHhhcCCCccccchHHHHH
Q psy1689         236 KDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIID--VNFY--PVEEARNSNMRHRPIGIGVQGLADLF  311 (998)
Q Consensus       236 ~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId--~~~~--p~~e~~~~~~~~R~IGLGv~GLad~L  311 (998)
                      .+++++|||+||||++|+       |++.|.++++.++|+||+|||  ++.+  |++++++.++++|+||||+|||||+|
T Consensus       294 ~~~~~~CnL~SINL~~~v-------~~~~~~~~v~~~vr~LDnvid~~i~~~p~~~~~~~~~~~~~R~IGLGvmGlad~L  366 (601)
T PRK09102        294 EDRTAVCCLSSLNLEYYD-------EWKDTDAFIEDLMRFLDNVLQDFIDKAPDEMERAKYSAMRERSVGLGVMGFHSYL  366 (601)
T ss_pred             CCceeeeeecceeHHHhc-------chhhHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCccccchhHHHHHH
Confidence            677999999999999997       467899999999999999998  4444  59999999999999999999999999


Q ss_pred             HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcC
Q psy1689         312 IQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHG  391 (998)
Q Consensus       312 ~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G  391 (998)
                      +++|++|+|+||++++++||+.|+++|+++|++||+|+|+||.|                                +++|
T Consensus       367 ~~lgi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~ErG~~p~~--------------------------------~~~G  414 (601)
T PRK09102        367 QSKMIPFESVMAKQWNKKIFKHIREQADKASKELAKEKGECPDA--------------------------------AGYG  414 (601)
T ss_pred             HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcch--------------------------------hhhC
Confidence            99999999999999999999999999999999999999999854                                3689


Q ss_pred             --CCcccccccCCccchhhhc-CCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCccccc
Q psy1689         392 --VRNSLLIAPMPTASTAQIL-GNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDI  468 (998)
Q Consensus       392 --~RNs~ltaiaPTgs~S~i~-G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~  468 (998)
                        +|||++||||||||||+|+ |+|+||||+|+++|.|++.+|+|.++|++|.+.|+++|+|++++++.++.+.|++|++
T Consensus       415 ~~~RNs~l~aiAPTgS~S~i~~g~S~gIEP~fs~~y~R~~~~g~~~~~n~~l~~~l~~~g~~~~~~~~~~~~~~gsvq~~  494 (601)
T PRK09102        415 VMRRFSTKMAIAPTASISIILGNTSPGIEPIAANYYTHKTLKGSFTVKNKYLEKLLEEKGKDTDEVWSSILTNEGSVQHL  494 (601)
T ss_pred             chhcccceeeeCCCcHHHHHcCCCCCCcccchhhheeEeecCceEEEECHHHHHHHHHcCCChHHHHHHHHhcCCCcccC
Confidence              9999999999999999999 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeecccccccc
Q psy1689         469 EGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI  547 (998)
Q Consensus       469 ~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~  547 (998)
                      |.+|++++.+|+||+||+|++||+|||++|||||||||+|||+|+ .+.++|.++|++||++|||| +||+|+++..+++
T Consensus       495 ~~~~~~~~~~f~tA~ei~~~~~i~~~A~~Q~~VDqsiS~tln~~~~~t~~dv~~~y~~Awk~GlK~-~yy~R~~~~~~~~  573 (601)
T PRK09102        495 DFLSEEEKDVFKTAFEIDQRWIIELAADRQKYIDQAQSLNLFLPANVPKRDLNKLHFEAWKKGVKS-LYYQRSKSVQRAD  573 (601)
T ss_pred             ccCChhHHhhcCcHhhCCHHHHHHHHHHHcccccccccCceecCCCCCHHHHHHHHHHHHHhCCCE-EEEEcCchhhhhH
Confidence            999999999999999999999999999999999999999999996 48999999999999999999 6777999998887


Q ss_pred             chh
Q psy1689         548 QFT  550 (998)
Q Consensus       548 ~~~  550 (998)
                      ++.
T Consensus       574 ~~~  576 (601)
T PRK09102        574 KVS  576 (601)
T ss_pred             Hhc
Confidence            764

>PRK08188 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=5.5e-101  Score=923.04  Aligned_cols=431  Identities=26%  Similarity=0.431  Sum_probs=388.9

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++++... ...++|.|+||.|+||++|||||++||++|+++|++..|++++++||+|||+||++|++|++|+|
T Consensus       229 sGvvp~mkl~d~~~~~v~Q~G~R~GA~avyL~~~HpDI~~FL~~K~~~gde~~R~~~l~~gV~ipD~Fme~v~~~~~~~L  308 (714)
T PRK08188        229 SGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKENEDMYL  308 (714)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCchHHHHHHHhhcccchhhhhhhchHHhccCHHHHHHHHcCCCeEe
Confidence            34568888887765 45567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCcchhhchhHH-----HHHHHHHHcCc-ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCcee
Q psy1689         149 MCPNTCRGLSDSWGEKFD-----DLYKKYEAEGK-FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIK  222 (998)
Q Consensus       149 f~P~~~~~L~~~yg~~F~-----~~Y~~~e~~g~-~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~  222 (998)
                      |+|.++   .++||++|+     +.|.++++++. .+++|+||+||++|++++|+||+|||+|+|++|++||.+  |+|+
T Consensus       309 f~P~~~---~~~yG~~f~~~~~~~~Y~~~v~~~~i~k~~I~Arel~~~I~~~~~etG~Pyi~f~D~vNr~np~~--G~I~  383 (714)
T PRK08188        309 FSPYDV---ERVYGKPFADISVTEKYDEMVADERIRKKKINAREFFQTLAEIQFESGYPYIMFEDTVNRANPIA--GRIN  383 (714)
T ss_pred             eCcchh---hhhhcccccchhHHHHHHHHHhCCcceeeEeeHHHHHHHHHHHHHHhCCCeEEeHHHHHhhCCCC--Ccee
Confidence            999875   578998885     67999988765 467999999999999999999999999999999999986  8999


Q ss_pred             ecCCccceecccCCC------------CcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCC-CcHHH
Q psy1689         223 CSNLCTEIVEYTSKD------------EVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNF-YPVEE  289 (998)
Q Consensus       223 ~sNpC~EI~l~~~~~------------~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~-~p~~e  289 (998)
                      +||||+||+|+++|.            +.++||||||||++|+       |+++|+++|+++||+||+|||++. +|+|+
T Consensus       384 ~SNlC~EI~q~~~p~~~~~~~~~~~~g~~~sCNLgSiNL~~~~-------d~~~l~~~v~~avR~LD~ViD~~~~~p~p~  456 (714)
T PRK08188        384 MSNLCSEILQVNSASEYNEDLSYAHIGKDISCNLGSLNIAHTM-------DSPDFGRTVETAIRALTAVSDMSHIRSVPS  456 (714)
T ss_pred             eecccccccccCChhhhccccccccCCCcceEEChhhhHHHhc-------CHHHHHHHHHHHHHHHHHHHHhhcCCCCch
Confidence            999999999987663            3479999999999985       678999999999999999999996 69999


Q ss_pred             HHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCcCccCccccc
Q psy1689         290 ARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYD  368 (998)
Q Consensus       290 ~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G-~f~~f~~S~~~~G~l~~d  368 (998)
                      ++++++++|+||||+||||++|+++||+|+|+||++|+++||+.|+++|++||++||+|+| +||.|++|+|++|.+ |+
T Consensus       457 ~~~~n~~~R~IGLGvmGl~~~La~~gi~Y~S~ea~~~~~~ife~i~y~A~~aS~eLAkErG~~f~~f~~S~~~~G~~-f~  535 (714)
T PRK08188        457 IEKGNAASHAIGLGQMNLHGYLAREGIFYGSEEALDFTNIYFYTVTYHALRASNLLARERGETFAGFEQSKYASGEY-FD  535 (714)
T ss_pred             HHHHHHhcCChhccHhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccChhhccch-hh
Confidence            9999999999999999999999999999999999999999999999999999999999999 599999999999987 33


Q ss_pred             c-----cCC--------------CCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEcc
Q psy1689         369 M-----WGV--------------TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL  429 (998)
Q Consensus       369 ~-----~~~--------------~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~  429 (998)
                      .     |..              ......+|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|+..
T Consensus       536 ~y~~~~~~~~~~~v~~~~~~~~~~~p~~~~W~~L~~~i~~~GlRNs~l~AiAPTgSiS~i~~~T~sIePi~s~v~~R~~~  615 (714)
T PRK08188        536 KYTQQDWQPKTAKVRELFARAGITIPTQEDWAQLRDDVMRHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEG  615 (714)
T ss_pred             hcchhccCcchhhhhhhhhhcccCCCcHHhHHHHHHHHHHhCcccceeeeeCCcchHHHHcCCCCCcCcchhhheeeecc
Confidence            2     221              112356899999999999999999999999999999999999999999999999864


Q ss_pred             c-cceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCcccccccee
Q psy1689         430 S-GEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN  508 (998)
Q Consensus       430 ~-G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~t  508 (998)
                      . |++..++                               |.++++.+++|+|||||+|+++|+|+|++|+|||||||+|
T Consensus       616 ~~g~~~~~~-------------------------------p~l~~~~~~~y~tA~ei~~~~~I~~~A~~Qk~VDQsiS~t  664 (714)
T PRK08188        616 KIGRVYYPA-------------------------------PYMTNDNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLT  664 (714)
T ss_pred             ccceEEeeC-------------------------------cccchhhHhHhCcHHhCCHHHHHHHHHHHcccchhhhcCc
Confidence            3 6555444                               3455566789999999999999999999999999999999


Q ss_pred             EeecC-CCHHHHHHHHHHHHHcCCceEEEEeecccccc
Q psy1689         509 IYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN  545 (998)
Q Consensus       509 l~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~  545 (998)
                      ||+++ .|.++|.++|++||++|||| +||+|+++...
T Consensus       665 l~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~R~~~~~~  701 (714)
T PRK08188        665 LFFPDTATTRDINKAQIYAWRKGIKT-LYYIRLRQMAL  701 (714)
T ss_pred             eecCCCCCHHHHHHHHHHHHHcCCCe-EEEEeeccccc
Confidence            99996 58999999999999999999 69999977643

>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=1.8e-100  Score=929.71  Aligned_cols=423  Identities=27%  Similarity=0.436  Sum_probs=395.1

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++|+... ...++|+||||+|+||++|||||++||++|++++    +++++|+||+|||+||++|++|++|+|
T Consensus       148 sGpvsfm~~~d~~~~~v~qgG~RRGA~m~~l~~~HpDI~~FI~~K~~~~----~~~~~n~sV~i~D~Fm~av~~d~~~~L  223 (752)
T PRK08665        148 SGPVSFMRVFDAATEAIKQGGTRRGANMGILRVDHPDIMEFITCKEDNG----ELTNFNISVAITEAFMEAVEADEEYDL  223 (752)
T ss_pred             CCchhHHHHHHHHHHHHHhCCcccceeEEEEcCCCccHHHHHHhcccCC----ccccceeeeccCHHHHHHHHcCCCeEE
Confidence            55788999999886 4567789999999999999999999999998765    478999999999999999999999999


Q ss_pred             eCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCcc
Q psy1689         149 MCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCT  228 (998)
Q Consensus       149 f~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~  228 (998)
                      |+|.+                      |+..++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|.+||||+
T Consensus       224 ~~p~~----------------------g~~~~~i~Ar~l~~~I~~~a~~~GePgi~f~D~iN~~n~~~~~g~I~~tNpCg  281 (752)
T PRK08665        224 INPRT----------------------GEVVGRLNAREVFDLIVEMAWENGEPGIVFIDRINRDNPTPHLGEIESTNPCG  281 (752)
T ss_pred             EcCCC----------------------ceeEEEEEHHHHHHHHHHHHHHhCCCeEEEHHHHhhcCCCCcCCcEEEecccc
Confidence            99963                      56779999999999999999999999999999999999999999999999999


Q ss_pred             ceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchHH
Q psy1689         229 EIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLA  308 (998)
Q Consensus       229 EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLa  308 (998)
                      ||++++    +++|||+||||++||++  +.|||+.|+++|+++||+||+|||.+.||+|++++.++++|+||||+||||
T Consensus       282 Eq~L~p----~~~CnLgSiNL~~~v~~--~~~D~~~l~~~v~~avr~LDnvId~~~~Pl~~~~~~~~~~R~IGLGv~Gla  355 (752)
T PRK08665        282 EQPLLP----YESCNLGSINLSKMVKN--GDVDWEKLREVVHLAVRFLDNVIDANKYPLPQIEEMTKGNRKIGLGVMGWA  355 (752)
T ss_pred             ccccCC----CCceeccceeHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhcCccccchhhHH
Confidence            988753    46899999999999963  579999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHH
Q psy1689         309 DLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA  388 (998)
Q Consensus       309 d~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~  388 (998)
                      |+|+++|++|+|+||++++++||+.|+++|+++|++||+|+|+||.|++|+|.++.+                       
T Consensus       356 d~L~~lgi~Y~S~ea~~l~~~i~~~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~~~~-----------------------  412 (752)
T PRK08665        356 DMLIQLGIPYDSEEAVELAEKVMKFIQDEAHAASRELAEERGPFPNYEGSIYDKDGL-----------------------  412 (752)
T ss_pred             HHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCcchhccc-----------------------
Confidence            999999999999999999999999999999999999999999999999999976643                       


Q ss_pred             hcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccc-eEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccc
Q psy1689         389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE-FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQD  467 (998)
Q Consensus       389 ~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~-~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~  467 (998)
                       .|+|||++||||||||||+|+|+|+||||+|+++|.|++.+|+ +.++|+++.+.|+++|+|++++++.+ ..+|++++
T Consensus       413 -~~~RNs~~taiAPTgTiS~i~g~SsGIEP~fa~~y~R~v~~g~~~~~vn~~~~~~l~~~g~~~~~~~~~~-~~~gs~~~  490 (752)
T PRK08665        413 -GPMRNATVTTIAPTGTISIIAGCSSGIEPLFALSFTRNVMDGERLVEVNPVFEAAAKEEGFYSEELMEKI-AEKGSIQD  490 (752)
T ss_pred             -ccccccceeeeCCccHHHhhcCCCCccCccccceeEEEecCCceeEEecHHHHHHHHHcCCCcHHHHHHH-HhcCCccc
Confidence             3799999999999999999999999999999999999998887 57899999999999999999998886 46899999


Q ss_pred             cCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeeccccccc
Q psy1689         468 IEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA  546 (998)
Q Consensus       468 ~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~  546 (998)
                      ++.+|++++.+|+||+||+|++||+|||++|||||||||+|||+|+ .+.++|.++|++||++||||+|||+..++..++
T Consensus       491 ~~~lp~~~~~~f~tA~di~~~~~i~m~A~~Q~~vD~siSkTvn~p~~~t~~dv~~~y~~Aw~~GlKg~t~YR~gs~~~~v  570 (752)
T PRK08665        491 IDEVPEDVRRVFVTAHDISPEWHVRMQAAFQKHTDNAVSKTVNFPNEATIEDVREVYRLAYELGCKGVTIYRDGSRDEQV  570 (752)
T ss_pred             CCCCChHHHHhcCcHhhCCHHHHHHHHHHHccccchhccCceecCCCCCHHHHHHHHHHHHHhCCCEEEEECCCCcccce
Confidence            9999999999999999999999999999999999999999999995 689999999999999999999999666666666


Q ss_pred             cch
Q psy1689         547 IQF  549 (998)
Q Consensus       547 ~~~  549 (998)
                      ...
T Consensus       571 l~~  573 (752)
T PRK08665        571 LST  573 (752)
T ss_pred             ecc
Confidence            543

>PRK06406 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=3.4e-100  Score=922.41  Aligned_cols=423  Identities=25%  Similarity=0.387  Sum_probs=391.8

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++|+... ...++|+||||+|+||++|||||++||++|...   ..+++++|+||+|||+||++|++|+.|.|
T Consensus       303 sG~vsfm~~~d~~~~~i~QGG~RrGA~m~~L~~~HpDI~eFI~~K~~~---~~~~~n~n~sV~i~D~FM~~v~~d~~~~L  379 (771)
T PRK06406        303 SGPLSFMRIFDVTTDVIKQGGKRRGANMGILSYHHPDIMEFITSKDSE---NKVLSNFNISVAVTDEFFDKLDNDDYYPL  379 (771)
T ss_pred             CChhhHHHHHHHHHHHHHcCCccccceEEEecCCCccHHHHHHhcccc---cchhhcCceeEEeCHHHHHHHHcCCCeEe
Confidence            45678999998886 456778999999999999999999999999643   24579999999999999999999999999


Q ss_pred             eCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCcc
Q psy1689         149 MCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCT  228 (998)
Q Consensus       149 f~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~  228 (998)
                      ++|.                      +|+.+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|.+||||+
T Consensus       380 ~~P~----------------------~g~~~~~v~AreL~~~I~~~a~~tGePgi~F~D~iNr~n~~~~~G~I~~tNpCg  437 (771)
T PRK06406        380 RNPR----------------------NGKEVKRIKARQVWDLIITQAWKTGDPGVIFLDEINRKNPVKNLGEIESTNPCG  437 (771)
T ss_pred             ecCC----------------------CCceeeeecHHHHHHHHHHHHHHHCCCeEEEhHhHHhcCCCccCCceEeecccc
Confidence            9996                      356789999999999999999999999999999999999999999999999999


Q ss_pred             ceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchHH
Q psy1689         229 EIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLA  308 (998)
Q Consensus       229 EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLa  308 (998)
                      ||++++    +++|||+||||++|+.+  +.|||+.|+++|+++|||||+|||.+.||+|++++.++++|+||||+||||
T Consensus       438 Eq~L~p----~~sCnLgSINL~~~v~~--~~~D~~~l~~~v~~avr~LDnvID~~~yPl~~~~~~~~~~R~IGLGvmGla  511 (771)
T PRK06406        438 EQPLLP----YESCNLGSINLSKFVEN--GKIDWDRLRETVHIATRFLDNVIDANKFPVPQIKEMTRMTRKIGLGVMGFA  511 (771)
T ss_pred             ccccCC----CcceechhhhHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHhhcCCceechHHHH
Confidence            997753    46999999999999963  579999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHH
Q psy1689         309 DLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA  388 (998)
Q Consensus       309 d~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~  388 (998)
                      |+|+++|++|+|+||++++++||++|+++|+++|++||+|+|+||.|++|.|.+.                         
T Consensus       512 d~L~~lgi~YdS~eA~~l~~~i~~~i~~~a~~aS~~LAkErG~fp~f~~s~~~~~-------------------------  566 (771)
T PRK06406        512 DMLIKLGIPYNSEEALEIAEKVMKFINEESHRASQKLAEERGVFPAWYGSEWEKK-------------------------  566 (771)
T ss_pred             HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCccchhhc-------------------------
Confidence            9999999999999999999999999999999999999999999999999987531                         


Q ss_pred             hcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccc-eEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccc
Q psy1689         389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE-FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQD  467 (998)
Q Consensus       389 ~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~-~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~  467 (998)
                      ..|+|||++||||||||||+|+|+|+||||+|+++|.|++.+|+ +.++|++|.+.|++.|+|++++++.+. ++|++|+
T Consensus       567 ~~g~RNs~ltaiAPTgSiS~i~g~SsGIEP~fa~~y~R~v~~g~~~~~vn~~l~~~l~~~g~~~~~~~~~i~-~~gs~~~  645 (771)
T PRK06406        567 GIKMRNSTTTTIAPTGTISIIAGCSSSIEPLFAIAFVRHVLNGQELLEVNPLFEEITRKRGLYSEELMRKVA-ETGNLQN  645 (771)
T ss_pred             CCcccccceeeeCCcchhhhhcCCCCccCccchhheEEEecCCceeEEecHHHHHHHHHcCCCcHHHHHHHH-hCCCccc
Confidence            24899999999999999999999999999999999999998875 689999999999999999999999875 6799999


Q ss_pred             cCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeeccccccc
Q psy1689         468 IEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA  546 (998)
Q Consensus       468 ~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~  546 (998)
                      + .+|++++.+|+||+||+|++||+|||++|+|||||||+|||+|+ ++.++|.++|++||++||||+|||...++..++
T Consensus       646 ~-~~p~~~~~~f~tA~dI~~~~~i~m~A~~Qk~vDqsiSkTinlp~~~t~~dv~~~y~~Aw~~GlKgitvYR~~s~~~qv  724 (771)
T PRK06406        646 I-DVPEDIKRIFVTAHEIDPQWHVLMQATFQRYCDSGVSKTINLRYDATPEDIAKAYRLAKDLHCKGITVYRDKSKTVQV  724 (771)
T ss_pred             c-cCChHHHhhcccHHhCCHHHHHHHHHHHcccccCcccCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEcCCCcccce
Confidence            9 79999999999999999999999999999999999999999995 689999999999999999999999666666566


Q ss_pred             cchh
Q psy1689         547 IQFT  550 (998)
Q Consensus       547 ~~~~  550 (998)
                      ...+
T Consensus       725 l~~~  728 (771)
T PRK06406        725 LYAG  728 (771)
T ss_pred             eecc
Confidence            5553

>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=3.2e-98  Score=914.47  Aligned_cols=502  Identities=21%  Similarity=0.356  Sum_probs=423.0

Q ss_pred             CCceeEEEecCCcccHHHHHHhhccCcchhhhhhccccccccCHHHHHHhhcCCc-Ee-----eeCCCCCCCcchhhhhh
Q psy1689           1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQ-WS-----LMCPNACRGLSDSWGEK   74 (998)
Q Consensus         1 R~ga~~vyl~~wH~di~~fl~lk~~~g~E~~r~~~l~~~~~i~d~f~~rv~~~~~-~t-----lf~P~~~~~L~~s~g~~   74 (998)
                      |.||.+|||++|||||++||+||+   .|++|+++|++|++++.++++.|+.... |+     -|+|..        +..
T Consensus       275 RRGA~mv~LdvdHPDIeeFI~~K~---~ee~Kvaalv~gski~~k~lk~I~~A~~~~~G~~~~~~DP~~--------Npa  343 (1220)
T PRK07562        275 RRAAKMVIVDIDHPDIEEFIDWKV---KEEQKVAALVTGSKIVSKHLKAIMKACVNCEGDGDDCFDPAK--------NPA  343 (1220)
T ss_pred             ccCceEEEecCCcccHHHHHHhcc---chhhhHHhhhhcchHHHHHHHHHHHHHHhccccccccCCccc--------cHH
Confidence            889999999999999999999999   4999999999999999999999997632 11     234433        333


Q ss_pred             HHHHHHHHhhhc-------------cccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHH
Q psy1689          75 FDDLYKKYEAEG-------------LVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVE  141 (998)
Q Consensus        75 F~~lY~~~E~~~-------------~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~  141 (998)
                      +.....++.+..             ..|..--.+-.|-..|..+.+.  .         ...+|+|+||+|||+||++|+
T Consensus       344 Lk~aI~~Ak~~~vP~~~I~RvI~~A~qg~~~~~f~~yd~~~~~e~y~--t---------v~~qN~N~SV~VtDeFM~aVe  412 (1220)
T PRK07562        344 LKREIKAAKKALVPENYIKRVIQFARQGYTDIDFPTYDTDWDSEAYL--T---------VSGQNSNNSVRVTDEFLRAVE  412 (1220)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhhcccccccccccccccccchhc--c---------cccccccceeccCHHHHHHHH
Confidence            333333332111             1121111122233333322221  1         123689999999999999999


Q ss_pred             cCCceeeeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCce
Q psy1689         142 SDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTI  221 (998)
Q Consensus       142 ~d~~W~Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I  221 (998)
                      +|++|.|++|.                      +|++.++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|
T Consensus       413 ~d~~w~L~~p~----------------------~gkv~ktV~AReLw~kI~~aawetGdPgI~F~DtiN~~~~~~~~G~I  470 (1220)
T PRK07562        413 NDGDWNLTART----------------------DGKVAKTLKARDLWEKIGYAAWASADPGLQFNTTINDWHTCPASGPI  470 (1220)
T ss_pred             CCCCeeeeccC----------------------CCceeeEeeHHHHHHHHHHHHHHHCCceEEEehhhhhcCCCccCCee
Confidence            99999999986                      46778999999999999999999999999999999999999999999


Q ss_pred             eecCCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCc
Q psy1689         222 KCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIG  301 (998)
Q Consensus       222 ~~sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IG  301 (998)
                      ++||||+||+++.   + .+|||+||||.+|+++++..||++.|+++|++++++||++||++.||++++++.++++|+||
T Consensus       471 ~aSNPCsEi~lld---~-~aCNLaSINL~~Fv~~~~~~fD~e~l~~avrl~t~~LDi~id~~~yP~~ei~~~~~~~R~IG  546 (1220)
T PRK07562        471 RASNPCSEYMFLD---D-TACNLASLNLLTFRDEDTKRFDVEAYEHACRLWTVVLEISVLMAQFPSKEIAELSYEFRTLG  546 (1220)
T ss_pred             EeecCcccccCCC---C-CcccchhhhHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHhcCCCee
Confidence            9999999998752   3 36999999999999865456999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcC------------ccCccc-cc
Q psy1689         302 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV------------SQGILQ-YD  368 (998)
Q Consensus       302 LGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~------------~~G~l~-~d  368 (998)
                      ||+||||++|+++||+|||+||++++++||+.|+++|+++|++||+|+|+||.|++|+|            +.|.++ |+
T Consensus       547 LGvmGLadlL~~lGipYdS~EAr~la~~I~~~m~~~Ay~aSaELAkE~G~Fp~f~~s~~~~lrv~r~h~~aa~g~~~gy~  626 (1220)
T PRK07562        547 LGYANIGGLLMTMGIPYDSDEGRAICGALSAIMTGVAYATSAEMAKELGPFPGYEKNADHMLRVIRNHRRAAHGESEGYE  626 (1220)
T ss_pred             ehHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcccChhhhhhhhhhhhhhhcccccccc
Confidence            99999999999999999999999999999999999999999999999999999999996            333322 34


Q ss_pred             ccCCCCC---------------CHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCC-cccccccccceEEEEc-ccc
Q psy1689         369 MWGVTPT---------------DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN-NESFEPYTSNIYSRRV-LSG  431 (998)
Q Consensus       369 ~~~~~p~---------------~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~-S~gieP~~a~~y~R~~-~~G  431 (998)
                      .+...|.               ...+|++|++.+++||+|||++|+||||||||+|+|+ |+||||+|+++|.|+. .+|
T Consensus       627 ~~~~~p~~~~~~~~~~~~l~~~a~~~W~~l~~~i~k~G~RNA~ltaIAPTGTISlI~d~dTtGIEP~fAlv~~kkl~gGg  706 (1220)
T PRK07562        627 GLSVNPVPLDHANCPDQDLVAHAKAAWDKALELGEKHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGG  706 (1220)
T ss_pred             ccccCcccccccccchhhhccchhhhHHHHHHHHHHhCcccccccccCCcHHHHHhcCCCCCCcccCccceEEEEeccce
Confidence            4443331               2458999999999999999999999999999999998 9999999999976654 567


Q ss_pred             ceEEeChhHHHHHHHcCCCcHHHHHHHhh--cCCcccccCCC--------------------------------------
Q psy1689         432 EFQVVNHHLLRDLVELGLWDDNMKDQLIV--NNGSIQDIEGI--------------------------------------  471 (998)
Q Consensus       432 ~~~~vn~~l~~~L~~~g~~~~~~~~~i~~--~~Gsv~~~~~l--------------------------------------  471 (998)
                      +|.++|+++.++|+++||+++++.+.+.+  ..|+++++|.+                                      
T Consensus       707 ~f~ivN~~l~~~L~~lG~~~~~i~~i~~~~~~~Gsl~~~~~i~~~~l~~~Gf~~~~~~~~~~~l~~~fdi~~~fn~~~lg  786 (1220)
T PRK07562        707 YFKIINRAVPEALRTLGYSESQIAEIEAYAVGHGTLNQAPGINHSTLKAKGFTDEKIEKVEAALKSAFDIKFAFNKWTLG  786 (1220)
T ss_pred             eEEEEcHHHHHHHHHcCCCHHHHHHHHHHhhcCCCccCCCCCCHHHHhhcCCcHHHHHHHHHHhhhhhhhhhhhcccccc
Confidence            99999999999999999999888776644  36777665554                                      


Q ss_pred             ----------------------------------------------------Chhhhhhccccc--------CCChHHHH
Q psy1689         472 ----------------------------------------------------PQKLKDLYKTVW--------EIPQKTVL  491 (998)
Q Consensus       472 ----------------------------------------------------p~~~k~~f~tA~--------ei~~~~~I  491 (998)
                                                                          ++++..+|.+|.        +|++++||
T Consensus       787 ~~f~~~~lg~~~~~~~~~~f~ll~~~g~t~~~i~aan~~v~g~~~~e~ap~l~~eh~~vFd~A~~~g~~g~r~i~~~~Hi  866 (1220)
T PRK07562        787 EDFCKDTLGIPAEQLNDPSFDLLEHLGFSKKDIEAANDHVCGAMTLEGAPFLKAEHLPVFDCANPCGKIGKRYLSVESHI  866 (1220)
T ss_pred             hhhhhhcccCcHhhhccccchhhhhcccchhhHHHhhhhcccccccccCcccchhhhhhccccccccccccccCCHHHHH
Confidence                                                                445566889985        99999999


Q ss_pred             HHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeeccccccccchh
Q psy1689         492 DMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT  550 (998)
Q Consensus       492 ~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~~~~  550 (998)
                      +|+|++|||||.+||+|||||+ +|++|+.++|++||++|||++++|+..++..++....
T Consensus       867 ~M~aA~Q~fis~aISKTvNmP~~ATveDv~~~y~~a~~lG~KaitlYRdgsk~~qpL~~~  926 (1220)
T PRK07562        867 RMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALKANALYRDGSKLSQPLNSS  926 (1220)
T ss_pred             HHHHHhhhhccccccceeeCCCCCCHHHHHHHHHHHHHhCCcceEEEecCCccccccccc
Confidence            9999999999999999999995 7999999999999999999999998888888887654

>PRK06948 ribonucleotide reductase-like protein; Provisional

Probab=100.00  E-value=3e-98  Score=891.50  Aligned_cols=432  Identities=24%  Similarity=0.356  Sum_probs=378.2

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++|+... ...++|+||||+|+||++|||||++||++|+    +..|++++|+||+|||+||++|++|++|+|
T Consensus       145 sG~v~fm~~~d~~~~~v~Qgg~RrGA~~~~L~~~HpDI~~Fi~~K~----~~~~~~~~n~sv~i~D~FM~~v~~d~~~~L  220 (595)
T PRK06948        145 PGVCAALDRFDRICAALPFRDGRRGAQMAVLRCDHPDLLAFVAAKR----GRARWTTFNLSVAVTDAFMQAVAQDLPWAL  220 (595)
T ss_pred             CChhhHHHHHHHHHHHHHhCCCCccCeEEEEcCCCCCHHHHHHhcC----CccccccceeeEeECHHHHHHHHcCCCeEe
Confidence            45688999999886 4566799999999999999999999999997    346899999999999999999999999999


Q ss_pred             eCCCCCCCcchhhchhHHHHHHHHHHcCc-ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCc
Q psy1689         149 MCPNTCRGLSDSWGEKFDDLYKKYEAEGK-FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLC  227 (998)
Q Consensus       149 f~P~~~~~L~~~yg~~F~~~Y~~~e~~g~-~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC  227 (998)
                      |+|.+..   +++|+.+.      +++|. .+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|.+||||
T Consensus       221 ~~p~~~~---~~~~~~~~------~~~g~~~~~~v~Arel~~~I~~~~~~tGePgi~F~D~iN~~n~~~~~g~I~~tNpC  291 (595)
T PRK06948        221 RHRAPPR---RAAGGALR------GADGAWTYATVPARHLWREIVSAARDSAEPGLLFVDTIDAANPLREHERIDATNPC  291 (595)
T ss_pred             eCCcccc---ccccccch------hccCcceeeEEcHHHHHHHHHHHHHHHCCCeEEeHhHHHhhCCCccCCcEEeecCC
Confidence            9998643   34554331      34555 68999999999999999999999999999999999999999999999999


Q ss_pred             cceecccCCCCcceeeecccccccccCC-----CCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCcc
Q psy1689         228 TEIVEYTSKDEVAVCNLASIALNMYINP-----ADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGI  302 (998)
Q Consensus       228 ~EI~l~~~~~~~~~CNL~SINL~~~v~~-----~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGL  302 (998)
                      +||++++    +++|||+||||++||++     ....||+++|+++|+++||+||+|||++.||+|++++.++++|+|||
T Consensus       292 ~Ei~L~~----~~~CNLgSINL~~~v~~~~~~~~~~~~D~~~l~~~v~~avR~LDnvid~~~~p~~~~~~~~~~~R~IGL  367 (595)
T PRK06948        292 GEQPLPP----YGSCVLGPIDLSRFVRHPFGVGGEPRFDFAALATAVRIQVRMLDNALDLTRWPLAAHAREARQKRRIGV  367 (595)
T ss_pred             CCcccCC----CCceeccceeHHHHhccccccccccccCHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHhhcCCCcee
Confidence            9998764    57999999999999974     22479999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHH
Q psy1689         303 GVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAA  382 (998)
Q Consensus       303 Gv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~  382 (998)
                      |+|||||+|+++|++|+|+||++++++||+.|+++|+++|++||+|+|+||.|++|+|.+|.+..         ...|++
T Consensus       368 GvmGlad~L~~lgi~Y~S~ea~~~~~~i~~~i~~~A~~aS~eLA~ErG~fp~f~~s~~~~~~~~~---------~~~~~~  438 (595)
T PRK06948        368 GVTGLADALTMMRLRYDSPAAREMARYIASDLRHHAYAASAALAAERGAYPLCDPAAHLDALRAG---------PPLPHA  438 (595)
T ss_pred             cHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhcccccc---------ccCcHH
Confidence            99999999999999999999999999999999999999999999999999999999999886421         124899


Q ss_pred             HHHHHHhcCCCcccccccCCccchhhhc--CCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhh
Q psy1689         383 LKEKIAKHGVRNSLLIAPMPTASTAQIL--GNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIV  460 (998)
Q Consensus       383 Lr~~i~~~G~RNs~ltaiaPTgs~S~i~--G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~  460 (998)
                      |+++|++||+|||++||||||||||+|+  |+|+||||+|+++|+|++.+|++....           ++.+....    
T Consensus       439 l~~~i~~~G~RNs~ltaIAPTgSiS~i~~~~~S~GieP~fa~~y~R~~~~g~~~~~~-----------~~~~~~~~----  503 (595)
T PRK06948        439 VCHAIARHGLRNSHLLSFAPVGSVSLAFGDNCSPGIEPARAWIEHRPVRAGAGGARG-----------MRAENHAY----  503 (595)
T ss_pred             HHHHHHHhCcchhheeeeCCcHHHHHHhcCCCCCCcccceeeeEEEEeccCCCcccc-----------eeeechhh----
Confidence            9999999999999999999999999998  589999999999999999888754211           11111100    


Q ss_pred             cCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEee
Q psy1689         461 NNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLR  539 (998)
Q Consensus       461 ~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R  539 (998)
                        ..++.++..|++++++|+||+||+|++||+|||++|+|||||||+|||+|+ .+.++|.++|++||++||||++|| |
T Consensus       504 --~~~~~~~~~~~~~~~~f~tA~di~~~~~i~~~A~~Qk~vDqsiS~Tvn~~~~~t~~dv~~~y~~Aw~~GlKgit~~-R  580 (595)
T PRK06948        504 --RLFRSLRGERAALPDYFVTAADVAPADHLAMRAALQPYVDAGISKTVTLPNHYSLAEVDALLFQAWRAGLKGITIF-R  580 (595)
T ss_pred             --hhccccCCCchhHHhhcCcHhhCCHHHHHHHHHHHcccchhhccCeEeeCCCCCHHHHHHHHHHHHHcCCCEEEEE-e
Confidence              012233445667788999999999999999999999999999999999996 599999999999999999997777 5


Q ss_pred             cccccc
Q psy1689         540 TKPAAN  545 (998)
Q Consensus       540 ~~~~~~  545 (998)
                      ..+...
T Consensus       581 ~~~~~~  586 (595)
T PRK06948        581 PDPALD  586 (595)
T ss_pred             CCcccC
Confidence            554443

>cd02888 RNR_II_dimer Class II ribonucleotide reductase, dimeric form

Probab=100.00  E-value=3e-94  Score=837.98  Aligned_cols=418  Identities=28%  Similarity=0.409  Sum_probs=369.2

Q ss_pred             ecCCcccHHHHHHhhccCcchhhhhhccccccccCHHHHHHhhcCCcEeeeCCCCC--C--CcchhhhhhHHHHHHHHh-
Q psy1689           9 LEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNAC--R--GLSDSWGEKFDDLYKKYE-   83 (998)
Q Consensus         9 l~~wH~di~~fl~lk~~~g~E~~r~~~l~~~~~i~d~f~~rv~~~~~~tlf~P~~~--~--~L~~s~g~~F~~lY~~~E-   83 (998)
                      +++...+++.+++.=    .|.-++-..--|+.+            +++-..|.+.  +  +-..+....|.++|+... 
T Consensus        37 ~~~~dds~~~I~~~~----~~~a~l~k~gGGvG~------------~~s~iRp~G~~i~~~~g~ssG~v~f~~~~d~~~~  100 (464)
T cd02888          37 LPVEDDSIEGIFDAL----KEAALIFKRGGGVGY------------NFSRLRPKGDIVKSTGGVASGPVSFMRVFDAATG  100 (464)
T ss_pred             cCCCCCCHHHHHHHH----HHHHHHHhcCCeEEe------------eccccCCCCCcccCCCCCCCChHhHHHHHHHHHH
Confidence            354434677777643    355555555455542            3333333211  1  112355678888888875 


Q ss_pred             hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceeeeCCCCCCCcchhhch
Q psy1689          84 AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGE  163 (998)
Q Consensus        84 ~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~Lf~P~~~~~L~~~yg~  163 (998)
                      ...++|+||||+|+||++|||||++||++|+++++ +.|++++|+||+|||+||++|++|++|+||+|.++         
T Consensus       101 ~i~qgg~RrgA~~~~l~~~HpDi~~Fi~~K~~~~~-~~~~~~~n~sv~i~D~Fm~~v~~~~~w~L~~p~~~---------  170 (464)
T cd02888         101 VIKQGGTRRGANMGVLDVDHPDIEEFIDAKMKEEK-TVVLQNFNISVAVTDAFMEAVENDEPWELRNPREP---------  170 (464)
T ss_pred             HHHhCCcccceeEEEEcCCCccHHHHHHHccccCc-ccccccceeEEEeCHHHHHHHHcCCCeEeeCcccc---------
Confidence            44567899999999999999999999999998775 45899999999999999999999999999999865         


Q ss_pred             hHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCccceecccCCCCcceee
Q psy1689         164 KFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCN  243 (998)
Q Consensus       164 ~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~EI~l~~~~~~~~~CN  243 (998)
                                .++...++|+||+||++|++++|+||+|||+|+|++|+++++++.|+|++||||+||+|+.    .++||
T Consensus       171 ----------~~~~~~~~v~Arel~~~i~~~~~~tG~Pgi~f~D~~N~~~~~~~~~~i~~sNpC~Ei~l~~----~~~Cn  236 (464)
T cd02888         171 ----------DTGKVYRTVPARELWDKIVEAAWDSADPGVLFIDTINRWNPLPGLGRINATNPCGEQPLLP----YESCN  236 (464)
T ss_pred             ----------CCCceeeEeeHHHHHHHHHHHHHHHCCCeEEEhHHHHhhCCccccCceeeccCCcccccCC----CCccc
Confidence                      2456789999999999999999999999999999999999999999999999999999874    46999


Q ss_pred             ecccccccccCCCC--CCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCCCCCH
Q psy1689         244 LASIALNMYINPAD--KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCN  321 (998)
Q Consensus       244 L~SINL~~~v~~~~--~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~  321 (998)
                      |+||||++|+++++  ..||++.|+++|+++||+||+|||.+.||+|++++.++++|+||||+|||||+|+++|++|+|+
T Consensus       237 L~SiNL~~fv~~~~~~~~fD~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGlG~~Glad~L~~~gi~y~S~  316 (464)
T cd02888         237 LGSINLSKFVKNPFGGASFDFERLREAVRLAVRFLDNVIDVNRYPLPEIAEETKATRRIGLGVMGLADMLIKLGIPYDSE  316 (464)
T ss_pred             chhhhHHHHhcccCcccccCHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHhhccCceeecHHHHHHHHHHcCCCCCCH
Confidence            99999999997533  2699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccC
Q psy1689         322 ESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPM  401 (998)
Q Consensus       322 ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaia  401 (998)
                      ||++++++||+.|+++|+++|++||+|+|+||.|++|+|++|.++++       ...+|++|++++++||+|||++||||
T Consensus       317 ea~~~~~~i~~~i~~~a~~aS~~LA~e~G~fp~f~~s~~~~g~~~~~-------~~~~w~~l~~~i~~~G~RNs~l~aiA  389 (464)
T cd02888         317 EARELAERIMSFIRDAAYRASAELAKERGPFPLFDASRYLMLKVIVN-------AKELPDDVLEEIEKYGIRNAHLTTIA  389 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcCcChhhcccchhc-------chhcHHHHHHHHHHhCcchhceeeeC
Confidence            99999999999999999999999999999999999999999998764       24689999999999999999999999


Q ss_pred             CccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhccc
Q psy1689         402 PTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT  481 (998)
Q Consensus       402 PTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~t  481 (998)
                      ||||||+|+|+|+||||+|                                                             
T Consensus       390 PTgs~S~i~g~s~gieP~~-------------------------------------------------------------  408 (464)
T cd02888         390 PTGTISLIAGTSSGIEPIF-------------------------------------------------------------  408 (464)
T ss_pred             CcHHHHHHhCCCCCcCCCC-------------------------------------------------------------
Confidence            9999999999999999998                                                             


Q ss_pred             ccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEe
Q psy1689         482 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYL  538 (998)
Q Consensus       482 A~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~  538 (998)
                          +|++||+|||++|+|||||||+|||+|+ .++++|.++|++||++||||+|||+
T Consensus       409 ----~~~~~i~~~a~~Q~~iDqsiS~tin~~~~~t~~d~~~~y~~aw~~G~K~~t~yR  462 (464)
T cd02888         409 ----SPEDHVRMQAALQPWVDGAISKTINLPNDATVEDVEAVYLLAWKLGLKGITVYR  462 (464)
T ss_pred             ----CHHHHHHHHHHHhccchhhhcceeecCCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence                7899999999999999999999999995 5999999999999999999999994

Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Many, bu

>TIGR02510 NrdE-prime ribonucleoside-diphosphate reductase, alpha chain

Probab=100.00  E-value=4.4e-94  Score=850.23  Aligned_cols=399  Identities=29%  Similarity=0.435  Sum_probs=364.9

Q ss_pred             hhhhhHHHHHHHHhhh-c--cccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCce
Q psy1689          70 SWGEKFDDLYKKYEAE-G--LVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQW  146 (998)
Q Consensus        70 s~g~~F~~lY~~~E~~-~--~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W  146 (998)
                      +....|.++|+.+... .  ++|+||||+|+||++|||||++||++|++++    +++++|+||+++|.||++++++.  
T Consensus       140 sG~~~~m~~~d~~~~~i~~~qgg~RrGA~~~~L~~~HpDI~eFi~~K~~~~----~~~~~~~~v~~~d~f~~~~~~~~--  213 (571)
T TIGR02510       140 NGADAFAPLFDNFIETFNKVAAAGRRGECAAYLDFEHGDFEELLGIQLEHP----ASAHLFWGFEKEDRWLEELIAGD--  213 (571)
T ss_pred             CCcchHHHHHHHHHHHHHHhhCCcCccceEEEEcCCcccHHHHHHhcccCC----CCCceeeeeccCHHHHHHHHhCC--
Confidence            4456788888887633 3  7889999999999999999999999998776    47999999999999999998651  


Q ss_pred             eeeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCC--CCCC-ceee
Q psy1689         147 SLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQ--QNLG-TIKC  223 (998)
Q Consensus       147 ~Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~--~~~g-~I~~  223 (998)
                                                         .++|+||++|++++|+||+|||+|+|++|+++|+  ++.| +|++
T Consensus       214 -----------------------------------~~ar~lw~~I~~~~~etG~P~l~f~D~~N~~~p~~~~~~G~~I~a  258 (571)
T TIGR02510       214 -----------------------------------GEKMARWAELLKMRAETGIGYLFFNDIANEKAPEAFKALGIPIRA  258 (571)
T ss_pred             -----------------------------------chHHHHHHHHHHHHHHhCCceEEEhHHhhhhCchhhhhcCCeEEe
Confidence                                               1368999999999999999999999999999986  5778 8999


Q ss_pred             cCCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhh-----cCCCc---HHHHHHHHh
Q psy1689         224 SNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIID-----VNFYP---VEEARNSNM  295 (998)
Q Consensus       224 sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId-----~~~~p---~~e~~~~~~  295 (998)
                      ||||+||+||+.++++++|||+||||++|...        ...++|+++||+||+|||     .+.+|   ++++++.++
T Consensus       259 sNlC~Ei~l~~~~~~~~~CnLgSiNL~~~~~~--------~~~~~v~~avr~LDnViD~~i~~~~~~p~~~~~~~~~~~~  330 (571)
T TIGR02510       259 SNLCTEIALPSDDEESFTCCLSSLNLLHWDEI--------KDADAIETLVIFLDSVCDDFIAKAEEIPYDTLEKAIRFAE  330 (571)
T ss_pred             cCCCcceeccCCCCceeeeecchhhHHHHhhc--------ccccHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHH
Confidence            99999999999988999999999999998532        125899999999999999     45565   588888899


Q ss_pred             hcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCC
Q psy1689         296 RHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT  375 (998)
Q Consensus       296 ~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~  375 (998)
                      ++|+||||||||||+|+++|++|+|+||++++++||++|+++|+++|++||+|+|+++                      
T Consensus       331 ~~R~IGLGvmGlad~L~~lgi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~ErG~~~----------------------  388 (571)
T TIGR02510       331 KARAIGLGTLGFHSYLQMNDIAFESGAAFILNAEIFAEIKEAAEEASRELAEEHGEDE----------------------  388 (571)
T ss_pred             hcCCcccchhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcch----------------------
Confidence            9999999999999999999999999999999999999999999999999999999953                      


Q ss_pred             CHhhHHHHHHHHHhcCCCcccccccCCccchhhhcC-CcccccccccceEEEEccccceEEeChhHHHHHHHcCCC---c
Q psy1689         376 DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILG-NNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW---D  451 (998)
Q Consensus       376 ~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G-~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~---~  451 (998)
                             ++++++++|+|||++||||||||||+|+| +|+||||+|+++|.|++.+|+|+++|++|.+.|+++|+|   .
T Consensus       389 -------l~~~~~~~G~RNs~l~aiAPTgSiS~i~g~~S~gIEP~fa~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~  461 (571)
T TIGR02510       389 -------LAEVCEGKEMRNATLIAIAPNKSSAFIAGGVSPGIEPLTCNSFIKDLNAADFPFKNPFLAEVLKDKGKDKEIE  461 (571)
T ss_pred             -------hHHHHHhcCceeceeeeeCCcchHHHHhCCCCCCcCcchhhhhhhhccCCceEEECHHHHHHHHhcCCccccH
Confidence                   24556789999999999999999999996 999999999999999999999999999999999999999   7


Q ss_pred             HHHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC--CCHHHHHHHHHHHHHc
Q psy1689         452 DNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE--INYAKMSSMHFHGWKL  529 (998)
Q Consensus       452 ~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~--~t~~~i~~~~~~Awk~  529 (998)
                      +++++.+..++|+||+++.+|++++.+|+||+||+|++||+|||++|||||||||+|+|+++  .+.+++..+|++||++
T Consensus       462 ~~~~~~i~~~~gsv~~~~~l~~~~~~~f~tA~ei~~~~~I~m~A~~Q~~IDqsiS~Nl~~~~~~~~~~d~~~~y~~Aw~~  541 (571)
T TIGR02510       462 EKMEDIALEHNGSVQHLDFLTDEEKAVFKTAAEIDQHAIINLAAARQKHIDQAQSINLFFHADEAEPRDANAHRAFADDP  541 (571)
T ss_pred             HHHHHHHHHcCCCccccccCChHHHhHcCcHHhCCHHHHHHHHHHHccccccccCCccccCCCCCCHHHHHHHHHHHHHc
Confidence            88999999999999999999999999999999999999999999999999999999999974  4789999999999999


Q ss_pred             CCceEEEEeecccccccc
Q psy1689         530 GLKTGMYYLRTKPAANAI  547 (998)
Q Consensus       530 GlKt~~yY~R~~~~~~~~  547 (998)
                      |||| +||||+++.+++.
T Consensus       542 GlK~-~YY~rs~~~~~~~  558 (571)
T TIGR02510       542 GLKA-LYYLFSERGAKAS  558 (571)
T ss_pred             CCCe-EEeecchHHHHhh
Confidence            9999 9999998877664

This model represents a small clade of ribonucleoside-diphosphate reductase, alpha chains which are sufficiently divergent from the usual Class I RNR alpha chains (NrdE or NrdA, TIGR02506) as to warrant their own model. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain.

>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=1.9e-92  Score=892.38  Aligned_cols=314  Identities=25%  Similarity=0.390  Sum_probs=292.5

Q ss_pred             cceeeecccccccccCCC---CCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcC
Q psy1689         239 VAVCNLASIALNMYINPA---DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMR  315 (998)
Q Consensus       239 ~~~CNL~SINL~~~v~~~---~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lg  315 (998)
                      +++||||||||++|+..+   +..|||++|+++|+++||+||+|||.+.||+|++++.+++.|+||||+|||||+|++||
T Consensus      1305 y~sCNLgSINL~~fV~~~~~g~~~fD~e~l~~~V~~avR~LDnVID~~~yPlp~i~~~~~~~R~IGLGvmGLad~L~~lG 1384 (1740)
T PRK08332       1305 YESCNLASINLAKFVKYDENGKPYFDWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLG 1384 (1740)
T ss_pred             CCeeecHHHHHHHHhcccccCccccCHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHhhhcCCcccchhHHHHHHHHcC
Confidence            458999999999999742   23699999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcc
Q psy1689         316 LPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNS  395 (998)
Q Consensus       316 l~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs  395 (998)
                      ++|+|+||++++++||+.|+++|+++|++||+|+||||.|++|+|++|.++++.|........+|++|+++|++||+|||
T Consensus      1385 I~YdSeEA~~~~~~I~e~i~~~A~~aS~eLAkErG~FP~fe~S~y~~G~l~~~~~~~~~~~~~~W~~L~e~I~k~GlRNs 1464 (1740)
T PRK08332       1385 IPYNSEEGFKFMRKVTEYLTFYAYKYSVEAAKKRGTFPLYEKTEYPKGELPVEGFYHPEIWNLPWDKLVEEIKKYGVRNA 1464 (1740)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCchhcccccccccccchhccccHHHHHHHHHHhCcchh
Confidence            99999999999999999999999999999999999999999999999999887664322223479999999999999999


Q ss_pred             cccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhh
Q psy1689         396 LLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKL  475 (998)
Q Consensus       396 ~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~  475 (998)
                      ++||||||||||+++|+|+||||+|+++|.|++..|++.++|+++.+.|+++|+|+++++.+|....|++|+++.+|+++
T Consensus      1465 ~ltaIAPTGSiSliag~SsGIEPifA~~y~R~v~~G~~~~~np~~~~~l~~~g~~~~e~~~~I~~~~gsvq~~~~lpe~~ 1544 (1740)
T PRK08332       1465 MVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKKRGLYSEELLKKISDNYGSVQGLEEIPEDM 1544 (1740)
T ss_pred             eeeccCCCcchhhhcCCCCccccchhheeEEeccCceEEEecHHHHHHHHHcCCCcHHHHHHHHHhCCCccCcccCChhH
Confidence            99999999999999999999999999999999999999999999999999999999999999988889999999999999


Q ss_pred             hhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeeccccccccchhhh
Q psy1689         476 KDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID  552 (998)
Q Consensus       476 k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~~~~~~  552 (998)
                      +.+|+||+||+|.+||+|||++|+|||||||+|||+|+ .|.+||.++|++||++||||+|||+..++..++.....+
T Consensus      1545 ~~~F~TA~DI~~~~hI~mqAa~Qk~VDqaISKTiNlP~dat~eDv~~iY~~Awk~GlKGiTvYRdgs~~~qVl~~~~~ 1622 (1740)
T PRK08332       1545 QRVFVTALDIHWLDHILAQANIQMWLTDSASKTINMINEATVEDVKAAYLIAHFLGCKGVTVYRDGSLSVQVYSVEGE 1622 (1740)
T ss_pred             hhhcccHhcCCHHHHHHHHHHHhhhccccccceeecCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCccceeeecCcc
Confidence            99999999999999999999999999999999999995 699999999999999999999999666665555554433

>cd01679 RNR_I Class I ribonucleotide reductase

Probab=100.00  E-value=6.6e-89  Score=791.71  Aligned_cols=351  Identities=57%  Similarity=0.897  Sum_probs=335.0

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++|+... ...++|+||||+|+||++|||||++||++|+++|+++.|++++|+||+|||+||++|+       
T Consensus       103 sG~v~~~~~~~~~~~~i~qgg~RrgA~~~~l~~~HpDi~~Fi~~K~~~~~~~~r~~~~n~~v~i~D~Fm~~v~-------  175 (460)
T cd01679         103 NGVIPFLKLLNDTARYVDQGGQRKGAGAVYLEIWHPDIEEFLDLKKNNGDERRRARDLFYGVWIPDLFMERVE-------  175 (460)
T ss_pred             CChhhHHHHHHHHHHHHHcCCccccceEEEEeCCCCcHHHHHHHhhccCchhhHhhcCceeeeeCHHHHHHHH-------
Confidence            45678888888886 4456789999999999999999999999999999999999999999999999999997       


Q ss_pred             eCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCcc
Q psy1689         149 MCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCT  228 (998)
Q Consensus       149 f~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~  228 (998)
                                                          |+||++|++++|+||+||++|+|++|+++|+++.|+|++||||+
T Consensus       176 ------------------------------------r~l~~~I~~~~~~tG~P~i~f~D~~N~~~~~~~~~~I~~sNpC~  219 (460)
T cd01679         176 ------------------------------------RDLWRKILESQFETGYPYILFKDTCNRKNPQKHLGTIKSSNLCT  219 (460)
T ss_pred             ------------------------------------HHHHHHHHHHHHHhCCcHHHhhHHHHhcCCcccCCeEEeecccc
Confidence                                                89999999999999999999999999999999999999999999


Q ss_pred             ceecccC-----CCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccc
Q psy1689         229 EIVEYTS-----KDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIG  303 (998)
Q Consensus       229 EI~l~~~-----~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLG  303 (998)
                      ||+|++.     .+++++|||+||||++|++       ++.|+++|++++|+||+|||.+.||+|++++.+++.|+||||
T Consensus       220 Ei~l~~~~~~~~~~~~~~CnL~sinL~~~v~-------~~~l~~~v~~avr~lD~vid~~~~p~~~~~~~~~~~R~iGlG  292 (460)
T cd01679         220 EILQPTSPSEDEPGEDAVCNLASINLGNFVT-------FEKLEEVVKLAVRALDNVIDLNYYPVPEAKRSNMRHRAIGLG  292 (460)
T ss_pred             ccccCCccccccCCCcceeecHHhHHHHHhC-------hHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHhcCccccc
Confidence            9999987     6788999999999999974       689999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHH
Q psy1689         304 VQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAAL  383 (998)
Q Consensus       304 v~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~L  383 (998)
                      +|||||+|+++|++|+|+||++++++||+.|+++|+++|++||+|+|                                 
T Consensus       293 v~Glad~L~~~gi~y~s~ea~~~~~~i~e~i~~~a~~aS~~LA~e~G---------------------------------  339 (460)
T cd01679         293 VMGLHDYLALLRIPYESEEALDLNDRIFETINYYALKASCELAKERG---------------------------------  339 (460)
T ss_pred             chHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------------------------
Confidence            99999999999999999999999999999999999999999999999                                 


Q ss_pred             HHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCC
Q psy1689         384 KEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNG  463 (998)
Q Consensus       384 r~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~G  463 (998)
                             |+|||++||||||||||+++|+|+||||+|+++|.|++.+|+|.++|+++.+.|+++|               
T Consensus       340 -------G~RNs~l~aiaPTgs~S~l~g~S~gieP~~a~~~~R~~~~g~~~~~n~~l~~~~~~~g---------------  397 (460)
T cd01679         340 -------GLRNSLLLAIAPTASISQILGATPSIEPITSNIYVRRVLSGEFPVVNPHLEKDLWEYG---------------  397 (460)
T ss_pred             -------CccccceeeeCCccHHHHhcCCCCCcCccccceeEEEccCCcEEEECHHHHHHHHHcC---------------
Confidence                   7999999999999999999999999999999999999999999999999998886654               


Q ss_pred             cccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeec
Q psy1689         464 SIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRT  540 (998)
Q Consensus       464 sv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~  540 (998)
                                    +|+||+||+|++||+|||++|||||||||+|||+|+ .+.++|.++|++||++||||+ ||||+
T Consensus       398 --------------~f~ta~di~~~~~i~~~a~~Q~~vDqsiS~t~~~~~~~~~~~i~~~~~~a~~~GlK~~-YY~r~  460 (460)
T cd01679         398 --------------LYKTAYEIDQRWLIDLAADRQKHIDQGQSLNLFLTPPATTRDLNSLYFYAWKKGLKTL-YYLRT  460 (460)
T ss_pred             --------------ccccHHhCCHHHHHHHHHHHccCcccccCceeecCCCCCHHHHHHHHHHHHHcCCCeE-EEeCC
Confidence                          699999999999999999999999999999999996 589999999999999999996 99996

Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (

>COG0209 NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]

Probab=100.00  E-value=6.1e-87  Score=806.93  Aligned_cols=442  Identities=37%  Similarity=0.619  Sum_probs=406.0

Q ss_pred             hhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceeee
Q psy1689          71 WGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLM  149 (998)
Q Consensus        71 ~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~Lf  149 (998)
                      +...|.++++... ...++|+|+||+|+||++|||||++||++|+++|++..|.++++++|+|||.||++++++++|+||
T Consensus       194 G~i~~~k~~d~~~~~i~QgG~R~GA~~v~L~~~HpDi~~fl~~k~~~gde~~r~~~~~~~~~i~d~~~~~~~~~~~~~l~  273 (651)
T COG0209         194 GVVPFMKLLDDAFDAINQGGVRRGAQAVYLDIWHPDIEEFLDAKRNNGDEILRAFDISVGVWIPDLFMKRAKEGEDWTLF  273 (651)
T ss_pred             CchhHHHHHHHHHHHHhhcCcCCCCeEEeecCCCccHHHHHHHHhhccccceeeeccccceeecHHHHHHHhcCCceEee
Confidence            3457888888885 556789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcchhhchhHHHHHHHHHHc-CcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCC-CCCceeecCCc
Q psy1689         150 CPNTCRGLSDSWGEKFDDLYKKYEAE-GKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQ-NLGTIKCSNLC  227 (998)
Q Consensus       150 ~P~~~~~L~~~yg~~F~~~Y~~~e~~-g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~-~~g~I~~sNpC  227 (998)
                      +|++.-++.+.||++|+. |.+++.+ +..+++|+|++||++|+..+|++|+||++|+|++|++++.. +.|+|++||||
T Consensus       274 ~P~~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~v~Ar~l~~~i~~~~~esG~P~l~f~D~~N~~~~~~~~~g~I~~sNlC  352 (651)
T COG0209         274 SPRDGYEAPDVYGAEFEE-YAEYEADPGIRKKRIKARELFDKLAEAAFETGDPYLIFVDTLNRRNPNAEGGGAIRASNLC  352 (651)
T ss_pred             CCcccccccccchhhHHH-HHHHhcCCCeeeeeEcHHHHHHHHHHHHHhcCCCeeEecccccCCCCCcccCceeeccccc
Confidence            999877899999999999 9998865 55789999999999999999999999999999999666554 56699999999


Q ss_pred             cceeccc-------CCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCC
Q psy1689         228 TEIVEYT-------SKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPI  300 (998)
Q Consensus       228 ~EI~l~~-------~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~I  300 (998)
                      +||.|++       .++++++|||+||||.+++..     + +.|+++++++||+||+|||++.||+|++++.+..+|+|
T Consensus       353 ~Ei~~~~~~~~~~~~~~~~~~CNL~siNl~~~~~~-----~-~~~~~~v~~~vr~Ld~vid~~~~p~~~~~~~n~~~R~i  426 (651)
T COG0209         353 SEILQRTKPLSLEQPLGEDASCNLGSINLAKFVKY-----G-DGLAELVAVAVRALDNVIDLNPYPVPEAERANAESRAI  426 (651)
T ss_pred             hhhhccccccccccCCCCceeeechhhhHHHHHhc-----c-hhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhhhcCcc
Confidence            9998777       567889999999999999863     2 34999999999999999999999999999999999999


Q ss_pred             ccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhH
Q psy1689         301 GIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDW  380 (998)
Q Consensus       301 GLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W  380 (998)
                      |||+|||||+|+++|++|+|+||.++++++|+.|+++|+++|++||+|+|+|+.|++|+|++|.++.+.+... ....+|
T Consensus       427 GlGvmgl~~~La~~~i~y~S~ea~~~~~~~~e~i~~~a~~aS~elA~e~G~~~~f~~s~~~~g~~~~~~~~~~-~~~~~w  505 (651)
T COG0209         427 GLGVMGLADLLAQLGIPYGSEEALKFNDRLFEYIAYYALKASAELAKERGPYPYFEGSRWARGILPIDYPRLF-GITEDW  505 (651)
T ss_pred             ccchhhHHHHHHhCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhccccccchhhhc-cccccH
Confidence            9999999999999999999999999999999999999999999999999999999999999999866643222 112899


Q ss_pred             HHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhh
Q psy1689         381 AALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIV  460 (998)
Q Consensus       381 ~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~  460 (998)
                      +.|++++++||+|||+++|||||||||+|+|+|+||||+|+++|.|....|.+.++++++.+.+...+            
T Consensus       506 ~~l~~~v~~~G~rns~~~aiaPtgsiS~i~~~t~~IeP~~~~~~~r~~~~g~~~~~~~~l~~~~~~~~------------  573 (651)
T COG0209         506 EKLREDIKKHGLRNSYLTAIAPTGSISYIAGTTSGIEPIFALVYFRETKGGRFYYVVPPLFEDLLAYY------------  573 (651)
T ss_pred             HHHHHHHHHhCcccccceeeCCccchhHhhCCCCCcCcChhheeeEecccceEEEeCcHHHHHHHHhh------------
Confidence            99999999999999999999999999999999999999999999999889999999999988775543            


Q ss_pred             cCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEee
Q psy1689         461 NNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLR  539 (998)
Q Consensus       461 ~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R  539 (998)
                                         ..|++|++.+||+|+|++|+|||||||+|||++. .+.+|+..+|++||++|||| +||+|
T Consensus       574 -------------------~~a~~i~~~~~i~~~a~~q~~iDq~iS~tl~~~~~~~~~d~~~~~~~Aw~~g~K~-~yY~~  633 (651)
T COG0209         574 -------------------GLAYEIDPLWHIDMQAAAQRWIDQGISKTLNLPNTATTKDLNKAYLYAWKLGLKT-TYYRR  633 (651)
T ss_pred             -------------------hhhhccChHHHHHHHHHhhcccccceeeeecCCCCCCHHHHHHHHHHHHHcCCce-EEEec
Confidence                               2399999999999999999999999999999994 68899999999999999999 99999


Q ss_pred             ccccccccchhhh
Q psy1689         540 TKPAANAIQFTID  552 (998)
Q Consensus       540 ~~~~~~~~~~~~~  552 (998)
                      +++..+..++.++
T Consensus       634 ~~~~~~~~~~~~~  646 (651)
T COG0209         634 TSQAAQVLTVVLD  646 (651)
T ss_pred             Ccccccccccccc
Confidence            9999988877665

>KOG1112|consensus

Probab=100.00  E-value=8.6e-75  Score=637.65  Aligned_cols=300  Identities=72%  Similarity=1.151  Sum_probs=275.5

Q ss_pred             hhccCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccC
Q psy1689         583 ICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG  662 (998)
Q Consensus       583 ~c~~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~  662 (998)
                      .-.+++|.|||||+||||+|+.|++||+|+||+.|+.+|||+|||+|++||||||+..|||+.|+||+.|+|+||||||+
T Consensus       493 ~SNmrhRPigiGVQGlAD~f~llr~pfeS~eA~~LN~qIFEtiYy~aleAScelA~~eGpyetyeGSPvSkGilq~dmw~  572 (796)
T KOG1112|consen  493 RSNMRHRPIGIGVQGLADAFILLRLPFESAEARLLNKQIFETIYYAALEASCELAQKEGPYETYEGSPVSKGILQFDMWN  572 (796)
T ss_pred             hcccccCCccccchhHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCcccCCCcccccccchhhcC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhH
Q psy1689         663 VTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHY  742 (998)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  742 (998)
                      ++|                                                                             
T Consensus       573 ~~p-----------------------------------------------------------------------------  575 (796)
T KOG1112|consen  573 VKP-----------------------------------------------------------------------------  575 (796)
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            653                                                                             


Q ss_pred             HHHHHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccc
Q psy1689         743 EIIMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEP  822 (998)
Q Consensus       743 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP  822 (998)
                                                          ++.|||+.||++|.+||+|||.++|+|||+|+|+|+|++++|||
T Consensus       576 ------------------------------------t~~wDW~~Lre~I~khGvRNSLl~ApMPTAsTsQIlGnNE~fEP  619 (796)
T KOG1112|consen  576 ------------------------------------TDLWDWATLREKIAKHGVRNSLLVAPMPTASTSQILGNNECFEP  619 (796)
T ss_pred             ------------------------------------CcccCHHHHHHHHHHhccccceeeccCCCcchhhhhcCccccCc
Confidence                                                25689999999999999999999999999999999999999999


Q ss_pred             cccceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhC
Q psy1689         823 YTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG  902 (998)
Q Consensus       823 ~~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q  902 (998)
                      +.+|+|+|++++|+|++|||||+++|.++|+|++++++.++..+||+|+|+.+|+++|++|||+|||+|+.+|+|+|+|+
T Consensus       620 ~tsNiYsRRvlsGeFqiVN~hll~DLv~~glW~~~mKn~lI~~nGSIq~i~~iP~~lk~lYkTvWEIsqktvi~mAAdRg  699 (796)
T KOG1112|consen  620 YTSNIYSRRVLSGEFQIVNPHLLKDLVELGLWDDEMKNKLIANNGSIQNIPEIPQDLKELYKTVWEISQKTVIDMAADRG  699 (796)
T ss_pred             ccccceeeeecccceEEEcHHHHHHHHHhccCCHHHHHHHHhcCCccccCccCCHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccceeecCCCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhhhhhhhcccCCCccchhhhhhhHHHH
Q psy1689         903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQA  982 (998)
Q Consensus       903 ~~iDqsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  982 (998)
                      .|||||||+||++.+++..++.++|||.||+|||++|||+|+++++.+|+||||+..+. .++....... ....+....
T Consensus       700 ~~iDQSqSlNi~~~~P~y~klTSmHFYgwkkGLKTGMYYLRt~~a~~aIqFTvdk~~~~-~~~~~~~~~~-~~~e~~~~~  777 (796)
T KOG1112|consen  700 AFIDQSQSLNIHLAKPNYGKLTSMHFYGWKKGLKTGMYYLRTRPAANAIQFTVDKKVLN-EKAEVAEGDS-KEEEEDEYN  777 (796)
T ss_pred             cccccccceeeeecCCCccccceeEeeehhcccccceeEEeccccccceEEEecHHHhc-ccccccccch-hhhHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999965432 2221111111 112233456


Q ss_pred             hhcccccCCCccccc
Q psy1689         983 MAAMICRRDNKEDCL  997 (998)
Q Consensus       983 ~~~~~~~~~~~~~~~  997 (998)
                      ++.|.|+++|+|.|+
T Consensus       778 ~~~~~c~~~n~e~C~  792 (796)
T KOG1112|consen  778 TAVMVCSLDNPEACL  792 (796)
T ss_pred             hhhhhhccCCchHhh
Confidence            788999999999996

>PLN02437 ribonucleoside--diphosphate reductase large subunit

Probab=100.00  E-value=8.1e-70  Score=663.20  Aligned_cols=296  Identities=63%  Similarity=1.045  Sum_probs=266.7

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ...|+||||||||||+|++||+||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.||+|+|++.+
T Consensus       515 ~~~R~IGLGv~Glad~L~~lgi~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~fp~f~~S~~~~G~~~~~~~~~~~  594 (813)
T PLN02437        515 MRHRPIGIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASSELAAREGPYETYAGSPVSKGILQPDMWGVTP  594 (813)
T ss_pred             hcCCCccccHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcchhhhccchhccCCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999998875321


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                                                                                                      
T Consensus       595 --------------------------------------------------------------------------------  594 (813)
T PLN02437        595 --------------------------------------------------------------------------------  594 (813)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                                       ...++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus       595 ---------------------------------~~~~dW~~Lr~~i~~~GlRNs~l~AiaPT~StS~i~g~s~giEP~~s  641 (813)
T PLN02437        595 ---------------------------------SGRWDWAALREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTS  641 (813)
T ss_pred             ---------------------------------chhhhHHHHHHHHHHhCcchhceeccCCcHHHHHHcCCCCccccccc
Confidence                                             12468999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689         826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI  905 (998)
Q Consensus       826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i  905 (998)
                      |+|+|++.+|+|+++|++|+++|+++|+|+++++++|+.++||||+++.||++++++|+|||||+|++||+|||++||||
T Consensus       642 n~y~R~~~~Ge~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~gsvq~~~~lp~~~~~~f~tA~ei~~~~~I~~aA~rQ~~I  721 (813)
T PLN02437        642 NIYSRRVLSGEFVVVNKHLLHDLTEMGLWTPTLKNKIIAENGSVQKIPEIPDDLKAIYKTVWEIKQRTLVDMAADRGCYI  721 (813)
T ss_pred             hheeEeecCceEEEECHHHHHHHHHcCCChHHHHHHHHhhCCCccCCCCCCHHHHHHhhhHHhCCHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceeecCCCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhhhhhhhcccCCCccchhhhhhhHHHHhhc
Q psy1689         906 DQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAA  985 (998)
Q Consensus       906 DqsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  985 (998)
                      |||||+|||||+.+.++|.++|++|||+||||+|||+|+++++++++|||++..+...........  ..+  +.+..++
T Consensus       722 DQsqS~nl~l~~~t~~~i~~~~~~Awk~GLKt~~YY~R~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~--~~~~~~~  797 (813)
T PLN02437        722 DQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVDTASLKPSATGVAAPE--EED--VETKMAQ  797 (813)
T ss_pred             ccccccccCCCCCCHHHHHHHHHHHHHcCCCeeEEEEeccccccceEEecchhhhccccccccCcc--ccc--cchhhhh
Confidence            999999999998899999999999999999999999999999999999999654332110000000  100  1123456


Q ss_pred             ccccCCCcccccC
Q psy1689         986 MICRRDNKEDCLK  998 (998)
Q Consensus       986 ~~~~~~~~~~~~~  998 (998)
                      ..|+++|++.|++
T Consensus       798 ~~~~~~~~~~c~~  810 (813)
T PLN02437        798 MVCSLDNREECLA  810 (813)
T ss_pred             ccCCCCCcccccc
Confidence            8999999998874

>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=6e-68  Score=656.04  Aligned_cols=309  Identities=35%  Similarity=0.569  Sum_probs=265.0

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ...|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|+||+|+|+.++
T Consensus       655 ~~~R~IGLGvmGlad~L~~lgi~Y~S~eA~~l~~~i~e~i~y~A~~aS~eLA~E~G~~~~f~gS~~~~g~~~~d~~~~~~  734 (965)
T PRK07207        655 LRHRPVGLGIMGFQDALYLLRIPYASDEAVEFADRSMEAVSYYAIWASTELAEERGRYSSYEGSLWSRGILPIDSLKLLA  734 (965)
T ss_pred             hccCCccccHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhcCccchhhhhhhh
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999876432


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                      ..                         |   + .|.                                            
T Consensus       735 ~~-------------------------r---~-~~~--------------------------------------------  741 (965)
T PRK07207        735 EA-------------------------R---G-GYL--------------------------------------------  741 (965)
T ss_pred             hh-------------------------h---c-ccc--------------------------------------------
Confidence            10                         0   0 000                                            


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                                   .+.....++|++||++|++||+|||+++|||||||||+|+|||+||||+|+
T Consensus       742 -----------------------------~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiAPT~S~S~i~g~s~giEP~~s  792 (965)
T PRK07207        742 -----------------------------EVDRSSTLDWDALRARIKKHGMRNSNCMAIAPTATISNIIGVSQSIEPTYQ  792 (965)
T ss_pred             -----------------------------cccccchhhHHHHHHHHHHhCccccceeccCChHHHHHHhCCCCccCcCch
Confidence                                         000124679999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689         826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI  905 (998)
Q Consensus       826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i  905 (998)
                      |+|+|++.+|+|.++||+|.++|+++|+|+++++++|...+||||+++.||+++|++|+|||||+|+|||+|||++||||
T Consensus       793 ~~y~r~~~~g~f~~vn~~l~~~l~~~~~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~f~tA~ei~~~~~I~~~A~rQ~~I  872 (965)
T PRK07207        793 NLYVKSNLSGEFTVVNPYLVRDLKARGLWDEVMVNDLKYFDGSLQRIDRIPADLKALYATAFEVDPRWLVEAASRRQKWI  872 (965)
T ss_pred             hhheeeccCCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCCccCCCCCChhHHhhcccCccCCHHHHHHHHHHHcCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceeecCCCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhhhhhhhcccCCCccchhhhhhhHHHHhhc
Q psy1689         906 DQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAA  985 (998)
Q Consensus       906 DqsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  985 (998)
                      |||||+|||||+++.++|.++|++||++|||| +||+|+++++++++||+++.++....................+....
T Consensus       873 DqsqS~nl~~~~~t~~~l~~~y~~Aw~~GlKt-~YY~Rs~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  951 (965)
T PRK07207        873 DQAQSLNLYMAGASGKKLDETYKLAWLRGLKT-TYYLRTLGATHVEKSTVNTGALNAVSSGGGGAGGAAAAAAAPPAADP  951 (965)
T ss_pred             hhhhcCCcCCCCCCHHHHHHHHHHHHHcCCCe-EEEEecccccchhhhccccccccccCCCccccccccccccCCCCCCC
Confidence            99999999999999999999999999999999 79999999999999999965432211110000000000000012235


Q ss_pred             ccccCCCcccccC
Q psy1689         986 MICRRDNKEDCLK  998 (998)
Q Consensus       986 ~~~~~~~~~~~~~  998 (998)
                      ..|++++|+ |++
T Consensus       952 ~~~~~~~~~-~~~  963 (965)
T PRK07207        952 KACSIDDPD-CEA  963 (965)
T ss_pred             CcccCCCCC-Ccc
Confidence            789998876 864

>cd01676 RNR_II_monomer Class II ribonucleotide reductase, monomeric form

Probab=100.00  E-value=2.6e-65  Score=611.06  Aligned_cols=372  Identities=15%  Similarity=0.076  Sum_probs=312.0

Q ss_pred             hhhhhhHHHHHHHHhh-------------------------hccccccccceEEEecCCcccHHHHHHhhhcCCcccccc
Q psy1689          69 DSWGEKFDDLYKKYEA-------------------------EGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRA  123 (998)
Q Consensus        69 ~s~g~~F~~lY~~~E~-------------------------~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~  123 (998)
                      .+....|.++|+.+..                         ...+|.||||.|.   ++||||++||++|+..+...   
T Consensus       214 asGp~~~~~~~~~~~~iL~~~~G~~L~~id~~di~n~~~~~v~~Gg~RR~A~M~---~~HpDi~eFi~aK~~~~~~~---  287 (658)
T cd01676         214 ASGPEPLKKLHKAIAAILNDRSGKPLTSVDIVDLMNLIGVCVVSGNVRRSAEIA---FGQPEDEDFADLKQYQWNPG---  287 (658)
T ss_pred             CCCcHHHHHHHHHHHHHHhhhcccccchhHHHHHHhhhhcEEeecCcccceecC---CCCccHHHHHHhcccCCccc---
Confidence            3556899999988532                         2356889998886   89999999999997654321   


Q ss_pred             cccceeeecCHHHHHHHHcCCceeeeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCcee
Q psy1689         124 RDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYM  203 (998)
Q Consensus       124 ~~l~~sV~I~D~Fm~~v~~d~~W~Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl  203 (998)
                       +                  ..|-+..+                       ++...+++++|++|.+|++++|+||+|||
T Consensus       288 -n------------------~~~~~~~n-----------------------~s~~~~~~~ar~~~~~I~~~~~~tGEPGi  325 (658)
T cd01676         288 -R------------------REHGWASN-----------------------NSVVFESKPDRLEYSFACMLIRGNGEPGI  325 (658)
T ss_pred             -c------------------chhheecc-----------------------cchheeehhhHHHHHHHHHHHHHhCCCcE
Confidence             1                  11222111                       23345688999999999999999999999


Q ss_pred             EehhhhhhhCCCC------CCCceeecCCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHH
Q psy1689         204 LYKDACNRKSNQQ------NLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLN  277 (998)
Q Consensus       204 ~f~D~~Nr~~~~~------~~g~I~~sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD  277 (998)
                      +|+|++|++++..      +.|+|.+||||+||+|++    +++|||+||||.+|+.      |+++|+++++++|||||
T Consensus       326 ~f~D~~N~~~~~~~~~~~~~~g~I~~TNPCgEi~L~~----~~~CNLgSINL~~~v~------d~~~l~~~v~~avRflD  395 (658)
T cd01676         326 AWLDNMKAYARMVLLTTPYHDLRAKGGNPCGEISLES----YELCNLVEVFPLKHEG------DLEDLQETLYLAGRYAK  395 (658)
T ss_pred             EEHHHHHhhCccccccccccCCeeEeccccccccCCC----CCceechhccHHhhcc------cHHHHHHHHHHHHHHHH
Confidence            9999999998752      457899999999999874    3689999999999974      78999999999999999


Q ss_pred             HhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q psy1689         278 KIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEG  357 (998)
Q Consensus       278 ~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~  357 (998)
                      +|++ +.||+|++++.+++.|+||||+|||||+|+++|++|++.++.    ++++.++..+..+|.++|+++|.      
T Consensus       396 ~Vi~-~~~p~~~~~~~~~~~R~IGlGvmGlaD~L~~lgi~~~~~~~~----~~~~~~~~~~~~~s~ela~e~G~------  464 (658)
T cd01676         396 TVTL-LPLHWEITNEIILRNRRIGVSMSGIADFIVRAGGDLTLHDLK----RWRNIGYEAVYQYDERLSKWLGI------  464 (658)
T ss_pred             Hhhc-ccCchHHHHHHHHhcccceeeeecHHHHHHHcCCCccHHHHH----HHHHHHHHHHHHHHHHHHHHhCC------
Confidence            9998 569999999999999999999999999999999999988876    45555566677778889998884      


Q ss_pred             CcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeC
Q psy1689         358 SPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN  437 (998)
Q Consensus       358 S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn  437 (998)
                                                        .||+++||||||||+|+|+|+|+||||+||++|+|++..+    .|
T Consensus       465 ----------------------------------~rn~~lTTIAPTGTiSliaG~SsGIEP~fA~~y~Rrv~~~----~~  506 (658)
T cd01676         465 ----------------------------------PLSIKVTCVKPSGTISLLAGASPGMHYPLGKYLIRRIRFQ----KH  506 (658)
T ss_pred             ----------------------------------ccccceEEECCCchHHHhcCCCCCcChhHhHHHHhhhhcc----cC
Confidence                                              2688999999999999999999999999999999998865    49


Q ss_pred             hhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCC-ccccccceeEeecCC-C
Q psy1689         438 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA-FIDQSQSLNIYMAEI-N  515 (998)
Q Consensus       438 ~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~-~VDqs~S~tl~l~~~-t  515 (998)
                      +++++.|++.|++.++...    ..  .++++.+|++.+.+|+||+||++.+||+|||++|+ ||||+||+|||+|+. +
T Consensus       507 ~pl~~~l~~~G~~~~~~~~----~~--~~~l~~iP~~~~~~f~Ta~dIs~~~hl~~qA~~Q~y~vD~avSkTIn~p~~~~  580 (658)
T cd01676         507 DPLAPALIAAGYHVEPDIY----DP--TSVLVEFPVKAGNADRTANTVSIVEQLSLLAFLQTYWADNQVSNTISFDPSPE  580 (658)
T ss_pred             cHHHHHHHHcCCCcHHHHh----cc--CCCcccCCHHHHhhcCCHHhCCHHHHHHHHHHhCcCCeeecccceEeeCCCCC
Confidence            9999999999999776422    23  35688999999999999999999999999999999 699999999999864 9


Q ss_pred             HHHHHHHHHHHHHcCCceEEEEeecccc---ccccchhhhHh
Q psy1689         516 YAKMSSMHFHGWKLGLKTGMYYLRTKPA---ANAIQFTIDKT  554 (998)
Q Consensus       516 ~~~i~~~~~~Awk~GlKt~~yY~R~~~~---~~~~~~~~~~~  554 (998)
                      .++|.++|.++|. ||||+|+|.|..+.   ++++...++++
T Consensus       581 ~~dV~~~l~~~~~-~~KG~t~l~~~d~~~~~~q~P~E~I~ke  621 (658)
T cd01676         581 GPALIQALQQFQY-QYKSVSLLPRFDTTKNAAQMPFEPITKE  621 (658)
T ss_pred             HHHHHHHHHHhhc-CCeEEEEeecCCcccCcccCCccccCHH
Confidence            9999999999955 99999999755443   25666667754

Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Man

>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional

Probab=100.00  E-value=6.5e-66  Score=644.02  Aligned_cols=274  Identities=33%  Similarity=0.549  Sum_probs=252.0

Q ss_pred             hccCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCC
Q psy1689         584 CRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV  663 (998)
Q Consensus       584 c~~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~  663 (998)
                      .....|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.||+|+|+.
T Consensus       735 ~n~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~e~G~y~~f~~S~~~~g~l~~d~~~~  814 (1046)
T PRK12365        735 ANLAHRAIGLGVMGFQDALYKLNISYASQEAVEFADYSSELIAYYAILASSLLAKERGTYSSYKGSKWDRGYLPIDTIEL  814 (1046)
T ss_pred             HHHhcCCcccchhhHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhhhhcchhhhhh
Confidence            44578999999999999999999999999999999999999999999999999999999999999999999999988753


Q ss_pred             CCccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHH
Q psy1689         664 TPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYE  743 (998)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  743 (998)
                      ...                         .|   +..                               +            
T Consensus       815 ~~~-------------------------~~---~~~-------------------------------~------------  823 (1046)
T PRK12365        815 LKE-------------------------YR---GEA-------------------------------N------------  823 (1046)
T ss_pred             hhh-------------------------hh---ccc-------------------------------c------------
Confidence            210                         00   000                               0            


Q ss_pred             HHHHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccc
Q psy1689         744 IIMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPY  823 (998)
Q Consensus       744 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~  823 (998)
                                                    ..++....++|++||++|++||+|||+++|||||||||+|+|+|+||||+
T Consensus       824 ------------------------------~~~~~~~~~~W~~Lr~~i~~~GlRNs~l~AiaPT~S~S~i~g~s~giEP~  873 (1046)
T PRK12365        824 ------------------------------LLMDTSSRKDWEPVRSLIKEYGMRNSQLMAIAPTATISNIIGVTQSIEPT  873 (1046)
T ss_pred             ------------------------------ccccccchhhHHHHHHHHHHhCcchhcceeeCCCchHHHHhCCCCCcccc
Confidence                                          00011245799999999999999999999999999999999999999999


Q ss_pred             ccceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCC
Q psy1689         824 TSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA  903 (998)
Q Consensus       824 ~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~  903 (998)
                      |+|+|+|++.+|+|.++|++|.++|+++|+|++++++.|..++||||+++.+|+++|++|+|||||+|+|||+|||++||
T Consensus       874 ~s~~y~r~~~~G~~~~~n~~l~~~l~~~~~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~I~~~A~rQk  953 (1046)
T PRK12365        874 YKHLFVKSNLSGEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKKIFLTAFEIEPEWIIECASRRQK  953 (1046)
T ss_pred             hhhhheeeccCCeEEEecHHHHHHHHHcCCChHHHHHHHHHhcCCcccccCCchHHHhhcCcHHhCCHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccceeecCCCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhhhh
Q psy1689         904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK  959 (998)
Q Consensus       904 ~iDqsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~~~  959 (998)
                      |||||||+||||++.+.++|.++|++||++|||| |||+|+++++++++||++..+
T Consensus       954 ~IDqs~S~nl~~~~~~~~~l~~~y~~Aw~~GlKt-~YY~Rt~~a~~~~~~t~~~~~ 1008 (1046)
T PRK12365        954 WIDMGQSLNLYLAEPDGKKLSNMYLTAWKKGLKT-TYYLRSSAATSVEKSFVDINK 1008 (1046)
T ss_pred             ccchhhcCCcCCCCCCHHHHHHHHHHHHHcCCCe-EEEeeccccchhhhhcccCCc
Confidence            9999999999999889999999999999999999 899999999999999999665

>PRK06539 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=2.4e-65  Score=623.70  Aligned_cols=307  Identities=32%  Similarity=0.573  Sum_probs=262.0

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ...|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.||+|+|....
T Consensus       507 ~~~R~IGLGvmGlad~L~~lgi~YdS~eA~~l~~~i~e~i~~~A~~aS~eLAkE~G~fp~f~~S~~~~G~l~~d~~~~~~  586 (822)
T PRK06539        507 QQNRAIGLGVMGFTDMVERLGYSYESEEAYDLIDRIMEHISYAAIDESADLAAERGAYPNFEGSRWSRGMVPVDSIALLE  586 (822)
T ss_pred             HhcccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhhhhcchhhhhhhh
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999998875321


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                      ..                            .+.|.                                             
T Consensus       587 ~~----------------------------~~~~~---------------------------------------------  593 (822)
T PRK06539        587 AD----------------------------RGVPV---------------------------------------------  593 (822)
T ss_pred             hh----------------------------ccccc---------------------------------------------
Confidence            00                            00000                                             


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                                   .+.+...++|+.|++++ ++|+|||+++|||||||||+|+|+|+||||+|+
T Consensus       594 -----------------------------~~~~~~~~dW~~L~~~i-~~GlRNs~l~AiAPTgS~S~i~g~S~gIEP~~s  643 (822)
T PRK06539        594 -----------------------------DVNRTTRLDWDALRAKV-RGGMRNATLMAIAPTASIGLVAGTTPGLDPQFS  643 (822)
T ss_pred             -----------------------------cccccchhcHHHHHHHH-HhCeeccceeecCCchhHHHhcCCCCCcCcchh
Confidence                                         00112367999999998 569999999999999999999999999999999


Q ss_pred             ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689         826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI  905 (998)
Q Consensus       826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i  905 (998)
                      ++|+|++.+|+|.++|++|+++|+++|+| ++++++|+..+||+|+++.+|++++++|+|||||+|++||+|||++||||
T Consensus       644 ~~y~R~~~~G~f~~vn~~l~~~L~~~g~~-~~~~~~i~~~~Gsvq~i~~iP~~~~~~f~tA~eI~~~~~I~maA~rQ~~I  722 (822)
T PRK06539        644 QIFSRSTSSGKFLEVNRNLVADLKELGLW-ETVREEILRSQGDIQEIAAIPDEIKALYRTSFQLSPYAFLEVAARAQKWV  722 (822)
T ss_pred             hhheeecccceEEEeCHHHHHHHHHcCCC-HHHHHHHHHhCCCccCcccCChHHHhhcCcHhhCCHHHHHHHHHHHCccc
Confidence            99999999999999999999999999999 57888999999999999999999999999999999999999999999999


Q ss_pred             cccccceeecCCCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhhhhhhhcccCCCccc----hhhhhhhHHH
Q psy1689         906 DQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRS----QEEIQADQEQ  981 (998)
Q Consensus       906 DqsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  981 (998)
                      |||||+||||++.+.+||.++|++||++|||| |||+|+++++++++||+++.+.......+....    .....+-+..
T Consensus       723 DqsiS~nl~l~~~t~~~v~~iy~~Aw~~GlKT-~YYlrt~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  801 (822)
T PRK06539        723 DQAISRNMYLESRDIGDMMDIYTAAWEMGVKT-TYYLHMKPRHTAEQSTVKVNKSAERRGGPRRGFAGFGAGVPPAVSAD  801 (822)
T ss_pred             hhhcCCeeecCCCCHHHHHHHHHHHHHcCCCe-EEeeccchhhhhhhhccccchhcccCCCCCCcccccCCCCCceeecc
Confidence            99999999999889999999999999999999 899999999999999999765443222211110    0011111222


Q ss_pred             HhhcccccCCCcc--ccc
Q psy1689         982 AMAAMICRRDNKE--DCL  997 (998)
Q Consensus       982 ~~~~~~~~~~~~~--~~~  997 (998)
                      ...+..|+.+.++  +|.
T Consensus       802 ~~~~~~~~~~~~~~~~~~  819 (822)
T PRK06539        802 LIPGASCPVDAQAPQQCE  819 (822)
T ss_pred             cccccCCCCCCCCCCCCC
Confidence            4556778888765  454

>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=2.5e-58  Score=564.35  Aligned_cols=283  Identities=19%  Similarity=0.309  Sum_probs=229.2

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      .+.|.||||+|||||+|++|||||||+||++|+++||++|+++|+++|+|||+|+|+||.|++|+|..            
T Consensus       540 ~~~R~IGLGvmGLadlL~~lGipYdS~EAr~la~~I~~~m~~~Ay~aSaELAkE~G~Fp~f~~s~~~~------------  607 (1220)
T PRK07562        540 YEFRTLGLGYANIGGLLMTMGIPYDSDEGRAICGALSAIMTGVAYATSAEMAKELGPFPGYEKNADHM------------  607 (1220)
T ss_pred             hcCCCeeehHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcccChhhh------------
Confidence            36789999999999999999999999999999999999999999999999999999999999998732            


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                              |+|+++           +++...|..              .|++.            ....|+         
T Consensus       608 --------lrv~r~-----------h~~aa~g~~--------------~gy~~------------~~~~p~---------  633 (1220)
T PRK07562        608 --------LRVIRN-----------HRRAAHGES--------------EGYEG------------LSVNPV---------  633 (1220)
T ss_pred             --------hhhhhh-----------hhhhhcccc--------------ccccc------------cccCcc---------
Confidence                    223332           111111100              00000            000000         


Q ss_pred             HHhhhhhhhhhhhcccccccccccccc---ccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCC-Ccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYD---MWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN-NESFE  821 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~-s~giE  821 (998)
                                            ++...   ...+.....++|++|++.+++||+|||++++||||||||+|+|| |+|||
T Consensus       634 ----------------------~~~~~~~~~~~l~~~a~~~W~~l~~~i~k~G~RNA~ltaIAPTGTISlI~d~dTtGIE  691 (1220)
T PRK07562        634 ----------------------PLDHANCPDQDLVAHAKAAWDKALELGEKHGYRNAQVTVIAPTGTIGLVMDCDTTGIE  691 (1220)
T ss_pred             ----------------------cccccccchhhhccchhhhHHHHHHHHHHhCcccccccccCCcHHHHHhcCCCCCCcc
Confidence                                  00000   00000013578999999999999999999999999999999999 99999


Q ss_pred             ccccceEEEEccc-cceEEechhHHHHHHHcCCChHHHHHHHH--hcCCccccCCCCC----------------------
Q psy1689         822 PYTSNIYSRRVLS-GEFQVVNHHLLRDLVELGLWDDNMKDQLI--VNNGSIQDIEGIP----------------------  876 (998)
Q Consensus       822 P~~a~~~~r~~~~-G~~~~~n~~l~~~l~~~G~~~~~~~~~i~--~~~Gsv~~i~~l~----------------------  876 (998)
                      |+|+++|.|++.. |.|.++|+++.+.|+++|++++++++.+.  ..+||+++++++|                      
T Consensus       692 P~fAlv~~kkl~gGg~f~ivN~~l~~~L~~lG~~~~~i~~i~~~~~~~Gsl~~~~~i~~~~l~~~Gf~~~~~~~~~~~l~  771 (1220)
T PRK07562        692 PDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHGTLNQAPGINHSTLKAKGFTDEKIEKVEAALK  771 (1220)
T ss_pred             cCccceEEEEeccceeEEEEcHHHHHHHHHcCCCHHHHHHHHHHhhcCCCccCCCCCCHHHHhhcCCcHHHHHHHHHHhh
Confidence            9999999998875 58999999999999999999988865543  3578887776654                      


Q ss_pred             --------------------------------------------------------------------hhhHhhhcccC-
Q psy1689         877 --------------------------------------------------------------------QKLKDLYKTVW-  887 (998)
Q Consensus       877 --------------------------------------------------------------------~~~k~~f~tA~-  887 (998)
                                                                                          +++..+|.||+ 
T Consensus       772 ~~fdi~~~fn~~~lg~~f~~~~lg~~~~~~~~~~f~ll~~~g~t~~~i~aan~~v~g~~~~e~ap~l~~eh~~vFd~A~~  851 (1220)
T PRK07562        772 SAFDIKFAFNKWTLGEDFCKDTLGIPAEQLNDPSFDLLEHLGFSKKDIEAANDHVCGAMTLEGAPFLKAEHLPVFDCANP  851 (1220)
T ss_pred             hhhhhhhhhcccccchhhhhhcccCcHhhhccccchhhhhcccchhhHHHhhhhcccccccccCcccchhhhhhcccccc
Confidence                                                                                44556889985 


Q ss_pred             -------CCChHhHHHHHHHhCCcccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhh
Q psy1689         888 -------EIPQKTVLDMAADRGAFIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID  956 (998)
Q Consensus       888 -------ei~~~~~I~m~a~~Q~~iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~  956 (998)
                             +|++++||+|||++|||||.+|||||||| ++|++|+.++|++||++|||++++||++++.+|++.....
T Consensus       852 ~g~~g~r~i~~~~Hi~M~aA~Q~fis~aISKTvNmP~~ATveDv~~~y~~a~~lG~KaitlYRdgsk~~qpL~~~~~  928 (1220)
T PRK07562        852 CGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALKANALYRDGSKLSQPLNSSLI  928 (1220)
T ss_pred             ccccccccCCHHHHHHHHHHhhhhccccccceeeCCCCCCHHHHHHHHHHHHHhCCcceEEEecCCccccccccccc
Confidence                   99999999999999999999999999999 8999999999999999999999999999999999988644

>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=1.7e-59  Score=593.77  Aligned_cols=258  Identities=23%  Similarity=0.353  Sum_probs=242.7

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ..+|+||||+|||||+|++|||||+|+||++|+++||++|+++|+++|++||+|+||||.|++|+|++|.+|+|.|....
T Consensus      1364 ~~~R~IGLGvmGLad~L~~lGI~YdSeEA~~~~~~I~e~i~~~A~~aS~eLAkErG~FP~fe~S~y~~G~l~~~~~~~~~ 1443 (1740)
T PRK08332       1364 KLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAYKYSVEAAKKRGTFPLYEKTEYPKGELPVEGFYHPE 1443 (1740)
T ss_pred             hhcCCcccchhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCchhcccccccccccch
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999876542100


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                                                                                                      
T Consensus      1444 -------------------------------------------------------------------------------- 1443 (1740)
T PRK08332       1444 -------------------------------------------------------------------------------- 1443 (1740)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                                       ....+|++|+++|+++|+|||+++|||||||||+|+|||+||||+||
T Consensus      1444 ---------------------------------~~~~~W~~L~e~I~k~GlRNs~ltaIAPTGSiSliag~SsGIEPifA 1490 (1740)
T PRK08332       1444 ---------------------------------IWNLPWDKLVEEIKKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFA 1490 (1740)
T ss_pred             ---------------------------------hccccHHHHHHHHHHhCcchheeeccCCCcchhhhcCCCCccccchh
Confidence                                             00136999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689         826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI  905 (998)
Q Consensus       826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i  905 (998)
                      ++|.|++..|+|.++||+|.+.|+++|+|+++++.+|..+.|++|+++.+|++++++|+||+||+|.+||+|||++||||
T Consensus      1491 ~~y~R~v~~G~~~~~np~~~~~l~~~g~~~~e~~~~I~~~~gsvq~~~~lpe~~~~~F~TA~DI~~~~hI~mqAa~Qk~V 1570 (1740)
T PRK08332       1491 LVYKKSVTVGEFYYVDPVFEAELKKRGLYSEELLKKISDNYGSVQGLEEIPEDMQRVFVTALDIHWLDHILAQANIQMWL 1570 (1740)
T ss_pred             heeEEeccCceEEEecHHHHHHHHHcCCCcHHHHHHHHHhCCCccCcccCChhHhhhcccHhcCCHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999999998889999999999999999999999999999999999999999


Q ss_pred             cccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhh
Q psy1689         906 DQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID  956 (998)
Q Consensus       906 DqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~  956 (998)
                      ||||||||||| ++|++||.++|++||++||||+||||.+++..|++...-+
T Consensus      1571 DqaISKTiNlP~dat~eDv~~iY~~Awk~GlKGiTvYRdgs~~~qVl~~~~~ 1622 (1740)
T PRK08332       1571 TDSASKTINMINEATVEDVKAAYLIAHFLGCKGVTVYRDGSLSVQVYSVEGE 1622 (1740)
T ss_pred             cccccceeecCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCccceeeecCcc
Confidence            99999999999 8899999999999999999999999999999999888544

>TIGR02506 NrdE_NrdA ribonucleoside-diphosphate reductase, alpha subunit

Probab=100.00  E-value=3e-59  Score=562.87  Aligned_cols=253  Identities=45%  Similarity=0.768  Sum_probs=235.3

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ...|+||||+|||||+|++||+||+|+||++|+++|||.|+++|+++|++||+|+|+||.|++|+|++|.+++|.|...+
T Consensus       364 ~~~R~iGlG~~Glad~L~~~gi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~f~~f~~s~~~~g~~~~~~~~~~~  443 (617)
T TIGR02506       364 QRRRSIGIGVMGLHDVLAKLGLPYDSEEARDLNDRIFEAIYYYAIKASAELAKEKGPFPGFSGSKYAKGWLHPDTWEKTI  443 (617)
T ss_pred             HhcCccccchhHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccccCcchhhhhhccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999988764321


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                      ..                           .                                  .|              
T Consensus       444 ~~---------------------------~----------------------------------~~--------------  448 (617)
T TIGR02506       444 DP---------------------------K----------------------------------TS--------------  448 (617)
T ss_pred             ch---------------------------h----------------------------------cc--------------
Confidence            00                           0                                  00              


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                                    +.. ..++|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus       449 ------------------------------~~~-~~~~W~~L~~~i~~~GlRNs~l~aiaPTgs~S~i~g~S~gieP~~a  497 (617)
T TIGR02506       449 ------------------------------MAP-TEEDWEALRERIKEYGLRNSQLTALMPTASSSQLTGVTESIEPVFS  497 (617)
T ss_pred             ------------------------------ccc-chhhHHHHHHHHHHhCccccceeccCChHHHHHHcCCCCccCcccc
Confidence                                          001 3578999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689         826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI  905 (998)
Q Consensus       826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i  905 (998)
                      ++|+|++.+|+|.++|++|++.|+++|+|++++++++....|++|+++++|++.+++|+||+||+|++||+|||++||||
T Consensus       498 ~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~tA~di~~~~~i~~~a~~Q~~v  577 (617)
T TIGR02506       498 NIFTKKTLSGEFLIPNKYLMKELEELGLWDADRRGDIVENVGSPQPIAAIPETLKYKYKTAYELDQEALIDMAADRQKFV  577 (617)
T ss_pred             hheeEecCCceEEEecHHHHHHHHHcCCCHHHHHHHHHhhCCCccCCCCCChhHHHHhchHhcCCHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999888889999999999999999999999999999999999999999


Q ss_pred             cccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCC
Q psy1689         906 DQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTK  945 (998)
Q Consensus       906 DqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~  945 (998)
                      |||||+|||+| +++.+||.++|++|||+|||| +||+|++
T Consensus       578 DqsiS~tl~~~~~~~~~dv~~~y~~Aw~~GlK~-~YY~r~~  617 (617)
T TIGR02506       578 DQSISLNLFLTEEVTAKDLLKLLLLAWKKGLKT-MYYCRSR  617 (617)
T ss_pred             ccccCCeeeCCCCCCHHHHHHHHHHHHHcCCCE-EEEeecC
Confidence            99999999999 699999999999999999999 9999974

This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage.

>PF02867 Ribonuc_red_lgC: Ribonucleotide reductase, barrel domain; InterPro: IPR000788 Ribonucleotide reductase (1

Probab=100.00  E-value=9.6e-59  Score=552.27  Aligned_cols=254  Identities=40%  Similarity=0.702  Sum_probs=213.4

Q ss_pred             CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCCc
Q psy1689         587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT  666 (998)
Q Consensus       587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~~  666 (998)
                      ..|+||||+|||||+|+++|++|+|+||++|+++|||.|+++|+++|++||+|+|+||.|++|+|++|.+++|.|.....
T Consensus       284 ~~R~iGlGv~Gla~~L~~~gi~y~S~ea~~~~~~i~e~i~~~a~~aS~~LA~e~G~~~~f~~s~~~~g~~~~~~~~~~~~  363 (538)
T PF02867_consen  284 RYRSIGLGVMGLADMLAKLGIPYDSEEARELADEIFEHIYYAAYRASVELAKERGPFPWFEKSKYARGELPFDRWDKLVD  363 (538)
T ss_dssp             HH--EEEEEESHHHHHHHTT--TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSTTGGGSTGGGTCCHHHHTTCSCC
T ss_pred             hcCccccccccHHHHHHhCCcCcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCchhcccchhhhhhhccc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999988754321


Q ss_pred             cchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHHH
Q psy1689         667 DLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM  746 (998)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  746 (998)
                      +..                                               ++          ..+               
T Consensus       364 ~~~-----------------------------------------------~~----------~~~---------------  371 (538)
T PF02867_consen  364 ERS-----------------------------------------------KV----------EKG---------------  371 (538)
T ss_dssp             GSS-----------------------------------------------HH----------HCT---------------
T ss_pred             ccc-----------------------------------------------cc----------ccc---------------
Confidence            000                                               00          000               


Q ss_pred             HhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccccccc
Q psy1689         747 KNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN  826 (998)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a~  826 (998)
                                                 ..+   +.++|++||+++++||+|||+++|||||||||+|+|+|+||||+|++
T Consensus       372 ---------------------------~~~---~~~~W~~Lr~~i~~~G~RNs~~~aiAPTgs~S~i~g~S~gIeP~~~~  421 (538)
T PF02867_consen  372 ---------------------------LSI---PTEDWDELREDIKKYGLRNSQLTAIAPTGSISLIAGTSSGIEPIFAN  421 (538)
T ss_dssp             ---------------------------------TTSHHHHHHHHHHHH--SSSS-BBBS--TTHHHHHTS-STTS--SSS
T ss_pred             ---------------------------ccc---chhhHHHHHHHHhhhcCCcceeecCCCCCCeEeecCcCceeccchhh
Confidence                                       001   23489999999999999999999999999999999999999999999


Q ss_pred             eEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCccc
Q psy1689         827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFID  906 (998)
Q Consensus       827 ~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~iD  906 (998)
                      +|.|++..|+|.++|+++.+.|+++|+|++++.++|..++|++|+++.+|++.+++|+||+||+|++||+|||++|||||
T Consensus       422 ~~~r~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~gsv~~~~~~~~~~~~~f~tA~ei~~~~~i~~~a~~Q~~vD  501 (538)
T PF02867_consen  422 VYTRRSLSGEFPVVNPYLLRDLKELGIWDEELIEEILRHQGSVQGLPELPDELKDVFKTAFEIDPEDHIRMQAARQKFVD  501 (538)
T ss_dssp             EEEEEETTSCEEEE-HHHHHHHHHTTHHSHHHHHHHHHTTTCCTT-TTS-HHHHHHT--GGGSCHHHHHHHHHHHHTTSS
T ss_pred             hhhhhhhcCCCcccChHHHHHHHHhCCcHHHHHHHHHhhhccccccccCCcchhhhcccHHhCCHHHHHHHHHHhhccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEe
Q psy1689         907 QSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYL  942 (998)
Q Consensus       907 qsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~  942 (998)
                      ||||+|||+| ++++++|.++|++||++||||+||||
T Consensus       502 qsiS~t~~~p~~~~~~~v~~~~~~A~~~GlK~~tyY~  538 (538)
T PF02867_consen  502 QSISKTLNLPSDATVEDVAELYLYAWKLGLKGITYYR  538 (538)
T ss_dssp             S-B-BEEEEGTTEEHHHHHHHHHHHHHTT-SEEECEE
T ss_pred             cCcCceeeecCCCCHHHHHHHHHHHHHhCCCeeEEeC
Confidence            9999999999 88999999999999999999999996

17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1DQ3_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A 1XJJ_A 1XJG_A 1XJM_B 3O0N_B ....

>PRK06556 vitamin B12-dependent ribonucleotide reductase; Validated

Probab=100.00  E-value=2e-57  Score=556.17  Aligned_cols=271  Identities=21%  Similarity=0.319  Sum_probs=232.9

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcC-cccccccCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQG-ILQYDMWGVT  664 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g-~l~~d~~~~~  664 (998)
                      ..+|+||||+|||||+|++|||||||+||++|+++||++|+++|+++|++||+|+|+||.|++|+|... .+...     
T Consensus       421 ~~~R~IGLGvmGlad~L~~lGi~YdS~ea~~la~~I~~~m~~~A~~aS~eLA~e~G~Fp~f~~s~~~~~~v~~~h-----  495 (953)
T PRK06556        421 RAFRQLGLGYANLGALLMATGLPYDSDGGRALAAAITSLMTGEAYRRSAELAGVVGPFEGYARNAEPHLRVMRKH-----  495 (953)
T ss_pred             HhccchhhhhhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhhhchhhhh-----
Confidence            467899999999999999999999999999999999999999999999999999999999999987532 11100     


Q ss_pred             CccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHH
Q psy1689         665 PTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEI  744 (998)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  744 (998)
                            |.            .|..                              +..+.         ..|         
T Consensus       496 ------~~------------~~~~------------------------------~~~~~---------~~~---------  509 (953)
T PRK06556        496 ------AA------------ANDA------------------------------IRPLG---------EVD---------  509 (953)
T ss_pred             ------hh------------hhhh------------------------------hhhhc---------cCc---------
Confidence                  00            0000                              00000         000         


Q ss_pred             HHHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCC-Ccccccc
Q psy1689         745 IMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN-NESFEPY  823 (998)
Q Consensus       745 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~-s~giEP~  823 (998)
                                                   ..+......+|++|++.+++||+|||+++|||||||||+|+|| |+||||+
T Consensus       510 -----------------------------~~l~~~~~~~W~~l~~~~~~~G~RNa~~taIAPTGTiS~i~g~~SsGIEP~  560 (953)
T PRK06556        510 -----------------------------AALLEAAKEAWDDALELGEKNGYRNAQASVLAPTGTIGFMMDCDTTGIEPD  560 (953)
T ss_pred             -----------------------------hhhhhhhhhhHHHHHHHHHHhCcccccceeecCchHHHHhcCCCCCCcccc
Confidence                                         0000013467999999999999999999999999999999999 9999999


Q ss_pred             ccceEEEEcc-ccceEEechhHHHHHHHcCCChHHHHHHH--HhcCCccccCCCCChhhHhhhcccC-------CCChHh
Q psy1689         824 TSNIYSRRVL-SGEFQVVNHHLLRDLVELGLWDDNMKDQL--IVNNGSIQDIEGIPQKLKDLYKTVW-------EIPQKT  893 (998)
Q Consensus       824 ~a~~~~r~~~-~G~~~~~n~~l~~~l~~~G~~~~~~~~~i--~~~~Gsv~~i~~l~~~~k~~f~tA~-------ei~~~~  893 (998)
                      |+++|.|++. +|.|.++|+++.+.|+++|++++++++.+  +..+|+|+++++||++++++|+||+       ||+|++
T Consensus       561 fa~v~~rk~~~~G~~~~vN~~~~~~L~~~G~~~~ei~~i~~~~~~~gsv~~~p~L~~e~~~vF~tA~~~~~g~rdI~p~~  640 (953)
T PRK06556        561 FALVKYKKLVGGGSMKIVNQTVPRALKKLGYSEEQIEAIVEYIAEHGHIEGAPGLKPEHYAVFDCAMKPASGERSISPMG  640 (953)
T ss_pred             eeeeeeEEeccCceeEEecHHHHHHHHHcCCCHHHHHHHHHHHHhCCCeecCCCCChHHhhhceeccccCCCCCccCHHH
Confidence            9999999865 57899999999999999999999876433  5678999999999999999999999       999999


Q ss_pred             HHHHHHHhCCcccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhh
Q psy1689         894 VLDMAADRGAFIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID  956 (998)
Q Consensus       894 ~I~m~a~~Q~~iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~  956 (998)
                      ||+|||++||||||||||||||| ++|++||.++|++|||+||||+||||++++..|++....+
T Consensus       641 hI~m~Aa~Q~fID~aiSkTvnlp~~at~edv~~~y~~Awk~GlKgit~YRdgsk~~qvL~~~~~  704 (953)
T PRK06556        641 HVRMMAAVQPFLSGAISKTVNMPEDATVEDIEEVYLEGWKLGLKALAIYRDNCKVGQPLNTSKK  704 (953)
T ss_pred             HHHHHHHHhhhcccccceEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEcCCCcccceeecccc
Confidence            99999999999999999999999 8899999999999999999999999999999999988654

>PRK06406 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=1.7e-56  Score=542.24  Aligned_cols=232  Identities=22%  Similarity=0.324  Sum_probs=218.2

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ..+|+||||+|||||+|++||+||||+||++|+++||++|+++|+++|++||+|+|+||.|++|.|++            
T Consensus       498 ~~~R~IGLGvmGlad~L~~lgi~YdS~eA~~l~~~i~~~i~~~a~~aS~~LAkErG~fp~f~~s~~~~------------  565 (771)
T PRK06406        498 RMTRKIGLGVMGFADMLIKLGIPYNSEEALEIAEKVMKFINEESHRASQKLAEERGVFPAWYGSEWEK------------  565 (771)
T ss_pred             hhcCCceechHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCccchhh------------
Confidence            46799999999999999999999999999999999999999999999999999999999999987621            


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                                                                                                      
T Consensus       566 --------------------------------------------------------------------------------  565 (771)
T PRK06406        566 --------------------------------------------------------------------------------  565 (771)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                                                    ...|+|||+++|||||||||+|+|||+||||+||
T Consensus       566 ----------------------------------------------~~~g~RNs~ltaiAPTgSiS~i~g~SsGIEP~fa  599 (771)
T PRK06406        566 ----------------------------------------------KGIKMRNSTTTTIAPTGTISIIAGCSSSIEPLFA  599 (771)
T ss_pred             ----------------------------------------------cCCcccccceeeeCCcchhhhhcCCCCccCccch
Confidence                                                          0137999999999999999999999999999999


Q ss_pred             ceEEEEccccc-eEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCc
Q psy1689         826 NIYSRRVLSGE-FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF  904 (998)
Q Consensus       826 ~~~~r~~~~G~-~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~  904 (998)
                      ++|+|++++|+ |.++||+|.+.|++.|+|++++++++ .++|++|++ .+|++++++|+||+||+|+|||+|||++|||
T Consensus       600 ~~y~R~v~~g~~~~~vn~~l~~~l~~~g~~~~~~~~~i-~~~gs~~~~-~~p~~~~~~f~tA~dI~~~~~i~m~A~~Qk~  677 (771)
T PRK06406        600 IAFVRHVLNGQELLEVNPLFEEITRKRGLYSEELMRKV-AETGNLQNI-DVPEDIKRIFVTAHEIDPQWHVLMQATFQRY  677 (771)
T ss_pred             hheEEEecCCceeEEecHHHHHHHHHcCCCcHHHHHHH-HhCCCcccc-cCChHHHhhcccHHhCCHHHHHHHHHHHccc
Confidence            99999999885 78999999999999999999999886 578999999 7999999999999999999999999999999


Q ss_pred             ccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhh
Q psy1689         905 IDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK  957 (998)
Q Consensus       905 iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~  957 (998)
                      ||||||+||||| +++.+||.++|++||++||||+||||.+++..|++.++..+
T Consensus       678 vDqsiSkTinlp~~~t~~dv~~~y~~Aw~~GlKgitvYR~~s~~~qvl~~~~~~  731 (771)
T PRK06406        678 CDSGVSKTINLRYDATPEDIAKAYRLAKDLHCKGITVYRDKSKTVQVLYAGTKT  731 (771)
T ss_pred             ccCcccCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEcCCCcccceeeccCcc
Confidence            999999999999 78999999999999999999999999999999999886553

>PRK08115 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=1.2e-56  Score=540.58  Aligned_cols=242  Identities=23%  Similarity=0.299  Sum_probs=213.5

Q ss_pred             hccCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCC
Q psy1689         584 CRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV  663 (998)
Q Consensus       584 c~~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~  663 (998)
                      ....+|+||||+|||||+|++|||||||+||++|+++||++|+++|+++|++||+|+|+||.|++|.|++|.++.+.|..
T Consensus       541 ~~~~~R~IGLGvmGLAD~L~~lgIpYdSeEA~~l~~~I~e~I~~~A~~AS~eLAkErG~FP~f~gs~~~~~~~~r~~~~~  620 (858)
T PRK08115        541 QALGERRVGLGVMGLHDLLIYCETVYGSEEGNQLVDQIFETIATTAYRTSIELAKEKGSFPFLVGQTEEETAKLREAFIN  620 (858)
T ss_pred             HhhhcCCeeechhhHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCchhhhhHHHhhhhh
Confidence            44578999999999999999999999999999999999999999999999999999999999999999877654322100


Q ss_pred             CCccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHH
Q psy1689         664 TPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYE  743 (998)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  743 (998)
                                                      .  +|                                           
T Consensus       621 --------------------------------~--~~-------------------------------------------  623 (858)
T PRK08115        621 --------------------------------T--GY-------------------------------------------  623 (858)
T ss_pred             --------------------------------c--cc-------------------------------------------
Confidence                                            0  00                                           


Q ss_pred             HHHHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccc
Q psy1689         744 IIMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPY  823 (998)
Q Consensus       744 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~  823 (998)
                                                          ....|..|++.|++||+||||++|||||||||+|+|||+||||+
T Consensus       624 ------------------------------------~~~~~~~Lre~I~k~GiRNS~ltaIAPTGSiS~Iag~SsGIEPi  667 (858)
T PRK08115        624 ------------------------------------MKKMPEDIREDILKYGIRNSHLLTVAPTGSTGTMVGVSTGLEPY  667 (858)
T ss_pred             ------------------------------------cccCcHHHHHHHHHhCcchhceeeeCChHHHHHHhCCCcccCcC
Confidence                                                11246899999999999999999999999999999999999999


Q ss_pred             ccceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCC
Q psy1689         824 TSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA  903 (998)
Q Consensus       824 ~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~  903 (998)
                      ||++|.|++..|+|+++|+++++.+.+.+.|                   ..|++++.+|+||+||+|++||+|||++||
T Consensus       668 fs~~y~R~~~~G~f~~vn~~~~~~~l~~~~~-------------------~~~~~l~~~F~TA~eI~p~~hI~mqAa~Qk  728 (858)
T PRK08115        668 FSFSYYRSGRLGKFIEVKADIVQEYLDKHPE-------------------ADENHLPEWFISAMELKPEAHADVQCIIQR  728 (858)
T ss_pred             eeeeEEEEeccCceEEEchHHHHHHHHhCCC-------------------CCchhHHHhcccHhhCCHHHHHHHHHHHcc
Confidence            9999999999999999999987655443221                   135667789999999999999999999999


Q ss_pred             cccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhh
Q psy1689         904 FIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK  957 (998)
Q Consensus       904 ~iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~  957 (998)
                      |||||||+|||+| ++|++||.++|++||++||||+||||++++.+|++......
T Consensus       729 ~VDqsISkTInlP~~at~edV~~iY~~Awk~GlKGiTvYrdGSr~~qvL~~~~~~  783 (858)
T PRK08115        729 WVDSSLSKTVNAPKGYTVEQVQKVYERLYRGGAKGGTVYVDGSRDAQVLTLKAEE  783 (858)
T ss_pred             ccchhhcCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCccceeeeecccc
Confidence            9999999999999 77999999999999999999999999999999999876554

>TIGR02510 NrdE-prime ribonucleoside-diphosphate reductase, alpha chain

Probab=100.00  E-value=1.7e-56  Score=530.16  Aligned_cols=227  Identities=29%  Similarity=0.404  Sum_probs=212.1

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ..+|+||||||||||+|++|||||+|+||++|+++||++|+++|+++|++||+|+|+|+.                    
T Consensus       330 ~~~R~IGLGvmGlad~L~~lgi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~ErG~~~l--------------------  389 (571)
T TIGR02510       330 EKARAIGLGTLGFHSYLQMNDIAFESGAAFILNAEIFAEIKEAAEEASRELAEEHGEDEL--------------------  389 (571)
T ss_pred             HhcCCcccchhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcchh--------------------
Confidence            467999999999999999999999999999999999999999999999999999998530                    


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                                                                                                      
T Consensus       390 --------------------------------------------------------------------------------  389 (571)
T TIGR02510       390 --------------------------------------------------------------------------------  389 (571)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcC-CCccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILG-NNESFEPYT  824 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g-~s~giEP~~  824 (998)
                                                                +++++++|+|||+++|||||||||+|+| ||+||||+|
T Consensus       390 ------------------------------------------~~~~~~~G~RNs~l~aiAPTgSiS~i~g~~S~gIEP~f  427 (571)
T TIGR02510       390 ------------------------------------------AEVCEGKEMRNATLIAIAPNKSSAFIAGGVSPGIEPLT  427 (571)
T ss_pred             ------------------------------------------HHHHHhcCceeceeeeeCCcchHHHHhCCCCCCcCcch
Confidence                                                      0122467999999999999999999997 899999999


Q ss_pred             cceEEEEccccceEEechhHHHHHHHcCCC---hHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHh
Q psy1689         825 SNIYSRRVLSGEFQVVNHHLLRDLVELGLW---DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADR  901 (998)
Q Consensus       825 a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~---~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~  901 (998)
                      +++|+|++.+|+|+++||+|.+.|+++|+|   ++++++.|..++||||+++++|++++++|+||+||+|++||+|||++
T Consensus       428 a~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~~~~i~~~~gsv~~~~~l~~~~~~~f~tA~ei~~~~~I~m~A~~  507 (571)
T TIGR02510       428 CNSFIKDLNAADFPFKNPFLAEVLKDKGKDKEIEEKMEDIALEHNGSVQHLDFLTDEEKAVFKTAAEIDQHAIINLAAAR  507 (571)
T ss_pred             hhhhhhhccCCceEEECHHHHHHHHhcCCccccHHHHHHHHHHcCCCccccccCChHHHhHcCcHHhCCHHHHHHHHHHH
Confidence            999999999999999999999999999999   78899999999999999999999999999999999999999999999


Q ss_pred             CCcccccccceeecC--CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhh
Q psy1689         902 GAFIDQSQSLNIYMA--EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI  955 (998)
Q Consensus       902 Q~~iDqsiS~tl~~~--~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~  955 (998)
                      |||||||||+|+|++  +.+.+|+.++|++|||+|||| +||+|+++.++++.-++
T Consensus       508 Q~~IDqsiS~Nl~~~~~~~~~~d~~~~y~~Aw~~GlK~-~YY~rs~~~~~~~~~~~  562 (571)
T TIGR02510       508 QKHIDQAQSINLFFHADEAEPRDANAHRAFADDPGLKA-LYYLFSERGAKASSGDL  562 (571)
T ss_pred             ccccccccCCccccCCCCCCHHHHHHHHHHHHHcCCCe-EEeecchHHHHhhhccc
Confidence            999999999999996  478999999999999999999 89999999888766554

This model represents a small clade of ribonucleoside-diphosphate reductase, alpha chains which are sufficiently divergent from the usual Class I RNR alpha chains (NrdE or NrdA, TIGR02506) as to warrant their own model. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain.

>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=1.2e-55  Score=537.72  Aligned_cols=233  Identities=25%  Similarity=0.410  Sum_probs=219.0

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ..+|+||||+|||||+|++|||||+|+||++|+++||++|+++|+++|++||+|+|+||.|++|+|.+|.+         
T Consensus       342 ~~~R~IGLGv~Glad~L~~lgi~Y~S~ea~~l~~~i~~~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~~~~---------  412 (752)
T PRK08665        342 KGNRKIGLGVMGWADMLIQLGIPYDSEEAVELAEKVMKFIQDEAHAASRELAEERGPFPNYEGSIYDKDGL---------  412 (752)
T ss_pred             HhcCccccchhhHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCcchhccc---------
Confidence            36799999999999999999999999999999999999999999999999999999999999998742210         


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                                                                                                      
T Consensus       413 --------------------------------------------------------------------------------  412 (752)
T PRK08665        413 --------------------------------------------------------------------------------  412 (752)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                                                      .|+|||++||||||||||+|+|||+||||+|+
T Consensus       413 ------------------------------------------------~~~RNs~~taiAPTgTiS~i~g~SsGIEP~fa  444 (752)
T PRK08665        413 ------------------------------------------------GPMRNATVTTIAPTGTISIIAGCSSGIEPLFA  444 (752)
T ss_pred             ------------------------------------------------ccccccceeeeCCccHHHhhcCCCCccCcccc
Confidence                                                            26899999999999999999999999999999


Q ss_pred             ceEEEEccccc-eEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCc
Q psy1689         826 NIYSRRVLSGE-FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF  904 (998)
Q Consensus       826 ~~~~r~~~~G~-~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~  904 (998)
                      ++|+|++..|+ +.++|++|.+.|+++|+|++++++.+ ..+|++|+++.||++++.+|+||+||+|++||+|||++|||
T Consensus       445 ~~y~R~v~~g~~~~~vn~~~~~~l~~~g~~~~~~~~~~-~~~gs~~~~~~lp~~~~~~f~tA~di~~~~~i~m~A~~Q~~  523 (752)
T PRK08665        445 LSFTRNVMDGERLVEVNPVFEAAAKEEGFYSEELMEKI-AEKGSIQDIDEVPEDVRRVFVTAHDISPEWHVRMQAAFQKH  523 (752)
T ss_pred             ceeEEEecCCceeEEecHHHHHHHHHcCCCcHHHHHHH-HhcCCcccCCCCChHHHHhcCcHhhCCHHHHHHHHHHHccc
Confidence            99999999887 67899999999999999999998886 57899999999999999999999999999999999999999


Q ss_pred             ccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhh
Q psy1689         905 IDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID  956 (998)
Q Consensus       905 iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~  956 (998)
                      ||||||+||||| +++.+||.++|++||++||||+||||++++..|++....+
T Consensus       524 vD~siSkTvn~p~~~t~~dv~~~y~~Aw~~GlKg~t~YR~gs~~~~vl~~~~~  576 (752)
T PRK08665        524 TDNAVSKTVNFPNEATIEDVREVYRLAYELGCKGVTIYRDGSRDEQVLSTGKK  576 (752)
T ss_pred             cchhccCceecCCCCCHHHHHHHHHHHHHhCCCEEEEECCCCcccceeccccc
Confidence            999999999999 7899999999999999999999999999999999887543

>PRK09102 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=1e-55  Score=526.25  Aligned_cols=224  Identities=33%  Similarity=0.525  Sum_probs=213.0

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ..+|+||||+|||||+|++||+||+|+||++|+++||++|+++|+++|++||+|+|+||.|+                  
T Consensus       350 ~~~R~IGLGvmGlad~L~~lgi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~ErG~~p~~~------------------  411 (601)
T PRK09102        350 MRERSVGLGVMGFHSYLQSKMIPFESVMAKQWNKKIFKHIREQADKASKELAKEKGECPDAA------------------  411 (601)
T ss_pred             HhcCccccchhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchh------------------
Confidence            36799999999999999999999999999999999999999999999999999999998532                  


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                                                                                                      
T Consensus       412 --------------------------------------------------------------------------------  411 (601)
T PRK09102        412 --------------------------------------------------------------------------------  411 (601)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhc--ccccceecCCCCcchhhhc-CCCccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHG--VRNSLLIAPMPTASTAQIL-GNNESFEP  822 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G--~RNs~~~aiAPTgSiS~i~-g~s~giEP  822 (998)
                                                                     ++|  +|||+++|||||||||+|+ |+|+||||
T Consensus       412 -----------------------------------------------~~G~~~RNs~l~aiAPTgS~S~i~~g~S~gIEP  444 (601)
T PRK09102        412 -----------------------------------------------GYGVMRRFSTKMAIAPTASISIILGNTSPGIEP  444 (601)
T ss_pred             -----------------------------------------------hhCchhcccceeeeCCCcHHHHHcCCCCCCccc
Confidence                                                           246  8999999999999999999 78999999


Q ss_pred             cccceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhC
Q psy1689         823 YTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG  902 (998)
Q Consensus       823 ~~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q  902 (998)
                      +|+++|+|++.+|+|.++||+|.++|+++|+|+++++++++.+.||+|+++++|++++++|+||+||+|++||+|||++|
T Consensus       445 ~fs~~y~R~~~~g~~~~~n~~l~~~l~~~g~~~~~~~~~~~~~~gsvq~~~~~~~~~~~~f~tA~ei~~~~~i~~~A~~Q  524 (601)
T PRK09102        445 IAANYYTHKTLKGSFTVKNKYLEKLLEEKGKDTDEVWSSILTNEGSVQHLDFLSEEEKDVFKTAFEIDQRWIIELAADRQ  524 (601)
T ss_pred             chhhheeEeecCceEEEECHHHHHHHHHcCCChHHHHHHHHhcCCCcccCccCChhHHhhcCcHhhCCHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhh
Q psy1689         903 AFIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI  955 (998)
Q Consensus       903 ~~iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~  955 (998)
                      ||||||||+||||| +++++||.++|++|||+|||| +||+|+++.+++.++.-
T Consensus       525 ~~VDqsiS~tln~~~~~t~~dv~~~y~~Awk~GlK~-~yy~R~~~~~~~~~~~~  577 (601)
T PRK09102        525 KYIDQAQSLNLFLPANVPKRDLNKLHFEAWKKGVKS-LYYQRSKSVQRADKVSH  577 (601)
T ss_pred             ccccccccCceecCCCCCHHHHHHHHHHHHHhCCCE-EEEEcCchhhhhHHhcc
Confidence            99999999999999 779999999999999999999 56679999998887743

>PRK08447 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=5e-56  Score=538.39  Aligned_cols=230  Identities=32%  Similarity=0.536  Sum_probs=203.6

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ...|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.||+|+|+...
T Consensus       543 ~~~R~IGLGvmGlad~La~lgi~Y~S~eA~~~~~~i~e~i~y~A~~aS~eLAkErG~fp~f~~S~~~~G~~~~d~~~~~~  622 (789)
T PRK08447        543 LKSRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDEIMEQISYNAIDASSNLALEKGVYPDFEGSNWSKGIFPIDKANEEA  622 (789)
T ss_pred             hcCCCeeeeHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChhhcCccchhhhhchh
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999988775321


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                      ..                      +   .+.+                                 +              
T Consensus       623 ~~----------------------~---~~~~---------------------------------~--------------  630 (789)
T PRK08447        623 KK----------------------L---VERG---------------------------------G--------------  630 (789)
T ss_pred             hh----------------------h---hccc---------------------------------c--------------
Confidence            00                      0   0000                                 0              


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                             +        ....++|++|+++|++||+|||+++|||||||||+|+|||+||||+|+
T Consensus       631 -----------------------~--------~~~~~dW~~L~~~I~k~GlRNs~l~AiAPTgS~S~i~g~S~gIEP~~s  679 (789)
T PRK08447        631 -----------------------L--------FDSACDWEGLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYK  679 (789)
T ss_pred             -----------------------c--------ccchhhHHHHHHHHHHhCccccceeeeCChHHHHHHhCCCcCcCcccc
Confidence                                   0        003569999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689         826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI  905 (998)
Q Consensus       826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i  905 (998)
                      ++|+|++.+|+|+++||+|.                               ++.+++|+|||||+|++||+|||++||||
T Consensus       680 ~~~~~~~~~g~~~~~~p~L~-------------------------------~~~~~~y~tA~ei~~~~~I~~~A~rQk~I  728 (789)
T PRK08447        680 RKWFEENLSGLIPVVVPNLS-------------------------------PETWQYYTPAYDLDQKDLIKAAAVRQKWI  728 (789)
T ss_pred             hheeEEeccceeEeeCCCCC-------------------------------hHHHHHhchHHhCCHHHHHHHHHHHhccc
Confidence            99999999999999988752                               33457999999999999999999999999


Q ss_pred             cccccceeecC--CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccc
Q psy1689         906 DQSQSLNIYMA--EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA  950 (998)
Q Consensus       906 DqsiS~tl~~~--~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~  950 (998)
                      |||||+|||||  +++.++|.++|++|||+|||| +||+|+++....
T Consensus       729 DQsiS~nl~~~~~~~t~~~l~~~y~~Awk~GlKt-~YY~Rt~~~~~~  774 (789)
T PRK08447        729 DQGQSLNIFLSLDKASGKYLNEIYTLAWKLGLKS-TYYLRSESPESE  774 (789)
T ss_pred             chhhcCccccCCCCCCHHHHHHHHHHHHHcCCCE-EEEEeccchhhc
Confidence            99999999999  479999999999999999999 688899886643

>TIGR02504 NrdJ_Z ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent

Probab=100.00  E-value=2.8e-55  Score=526.11  Aligned_cols=245  Identities=28%  Similarity=0.435  Sum_probs=228.4

Q ss_pred             CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCCc
Q psy1689         587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT  666 (998)
Q Consensus       587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~~  666 (998)
                      .+|+||||+|||||+|++||+||+|+||++++++||+.|+++|+++|++||+|+|+||.|++|+|++|.+++..+     
T Consensus       340 ~~R~iGlGv~Glad~L~~lgi~y~S~ea~~~~~~i~~~i~~~a~~aS~~LA~e~G~fp~f~~s~~~~g~~~~~~~-----  414 (586)
T TIGR02504       340 KTRRIGLGIMGLADLLIKLGIPYDSEEARAFAEELMAFIADAAYRASAELAKERGPFPLFEASRYEMGRAMGARI-----  414 (586)
T ss_pred             cCCccccchhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhccccccccc-----
Confidence            578999999999999999999999999999999999999999999999999999999999999999887741100     


Q ss_pred             cchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHHH
Q psy1689         667 DLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM  746 (998)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  746 (998)
                                                                                                      
T Consensus       415 --------------------------------------------------------------------------------  414 (586)
T TIGR02504       415 --------------------------------------------------------------------------------  414 (586)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccccccc
Q psy1689         747 KNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN  826 (998)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a~  826 (998)
                                                       ....|.+|++.+++||+|||+++|||||||||+|+|||+||||+|++
T Consensus       415 ---------------------------------~~~~~~~L~~~i~~~G~RNs~l~aiaPTgtiS~i~g~S~gieP~~a~  461 (586)
T TIGR02504       415 ---------------------------------PSALPAELREAIAKYGIRNAQLTTIAPTGTISLIAGTSSGIEPVFAL  461 (586)
T ss_pred             ---------------------------------cccChHHHHHHHHHhCCCccceeeeCCCchhhhhcCCCCccccchhh
Confidence                                             01257899999999999999999999999999999999999999999


Q ss_pred             eEEEEcccc-ceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689         827 IYSRRVLSG-EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI  905 (998)
Q Consensus       827 ~~~r~~~~G-~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i  905 (998)
                      +|.|++..| +|.++|+++.+.|++.|++++++++. +..+|+++++++ |++++.+|+||+||+|++||+|||++||||
T Consensus       462 ~y~r~~~~g~~~~~~n~~l~~~l~~~g~~~~~~~~~-~~~~gs~~~~~~-p~~~~~~f~tA~di~~~~~i~~~a~~Q~~v  539 (586)
T TIGR02504       462 VYFRNVTVGGELLEVNPIVELALRELGYYSDQIVKY-VDEKGTVEGAPG-PEELPKVFVTANDVSPEDHVLMQAAIQPWV  539 (586)
T ss_pred             hhheeeccCCcEEEeCHHHHHHHHHcCCChHHHHHH-HHcCCCcccCCC-chhHHhhccCcccCCHHHHHHHHHHHcCcc
Confidence            999999987 89999999999999999999998875 467899999999 999999999999999999999999999999


Q ss_pred             cccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccch
Q psy1689         906 DQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI  951 (998)
Q Consensus       906 DqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~  951 (998)
                      |||||+||||| +++.+||.++|++||++||||+||||.+++..|++
T Consensus       540 D~siS~ti~~~~~~~~~~v~~~y~~A~~~GlK~it~yR~~s~~~~~~  586 (586)
T TIGR02504       540 DSSISKTINMPSDATVEDVKAAYLLAWKLGLKGITVYRDGSRSSQVL  586 (586)
T ss_pred             cccccCeeecCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCcCCCcC
Confidence            99999999999 78999999999999999999999998888887764

This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ.

>TIGR02505 RTPR ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent

Probab=100.00  E-value=1.7e-54  Score=518.67  Aligned_cols=355  Identities=14%  Similarity=0.118  Sum_probs=290.6

Q ss_pred             chhhhhhHHHHHHHHh-------------------------hhccccccccceEEEecCCcccHHHHHHhhhcCCccccc
Q psy1689          68 SDSWGEKFDDLYKKYE-------------------------AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFR  122 (998)
Q Consensus        68 ~~s~g~~F~~lY~~~E-------------------------~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r  122 (998)
                      ..+.+..|.++|....                         ...++|.||||.|..|+++||||++|+.+|+..+.   .
T Consensus       230 ~ASGPvsl~~l~~~i~~iL~~~~G~~Lt~id~~di~~~~~~~Vv~GgvRRgA~M~~l~~dhpdi~~fi~aK~~~~~---~  306 (713)
T TIGR02505       230 TASGPVPLAKMLTDVAEILSNKAGGRLTAVDAADICNLIGKAVVAGNVRRSAEMALFSNDDPEFESFKQAKEKLMH---H  306 (713)
T ss_pred             CCCCcHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHhheeeecCccccceeeccCCCChHHHHHHhccccccc---c
Confidence            3466788998886541                         22356899999999999999999999999986542   2


Q ss_pred             ccccceeeecCHHHHHHHHcCCceeeeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCce
Q psy1689         123 ARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPY  202 (998)
Q Consensus       123 ~~~l~~sV~I~D~Fm~~v~~d~~W~Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pg  202 (998)
                      .+++|+||.|+|.||..                                                 .++...+|++|+||
T Consensus       307 ~~~~N~SV~v~d~f~~~-------------------------------------------------~~~~~~~~~~gePg  337 (713)
T TIGR02505       307 RWASNNSVAVDSAFSGL-------------------------------------------------ARSAADILENGEPG  337 (713)
T ss_pred             cccccceeEechhHHHH-------------------------------------------------hhhhccccccCCcc
Confidence            37899999999999821                                                 12233557899999


Q ss_pred             eEehhh-------hhhhCCCCCCCceeecCCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHH
Q psy1689         203 MLYKDA-------CNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKN  275 (998)
Q Consensus       203 l~f~D~-------~Nr~~~~~~~g~I~~sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~  275 (998)
                      ++|.|+       +|+.++.++.|.|.+||||+||+|++    +++|||+||||.+|+..      -+.|.+++++++|+
T Consensus       338 ~~fid~~~~~~~~in~~~~~~~~~~I~~tNPCgEi~L~~----~~~CNL~sINL~~~~~~------~~~l~~~~~~avr~  407 (713)
T TIGR02505       338 QVNLDLSKSEGRIVNGRYQAGEDGDVEGTNPCGEILLAN----GEPCNLFEVNLLAFEED------GWGLQRAFALAARY  407 (713)
T ss_pred             hhhHhhhhccccccccccccccCCceeecCCCccccCCC----CCceechhccHHhhccc------HHHHHHHHHHHHHH
Confidence            999999       57777778889999999999999874    35899999999999752      26899999999999


Q ss_pred             HHHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCC-------------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy1689         276 LNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRL-------------PFDCNESRLLNKQIFETIYYGALEAS  342 (998)
Q Consensus       276 LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl-------------~Y~S~ea~~l~~~I~e~i~~~A~~aS  342 (998)
                      ||+||+ +.||+|++++.++++|+||||+|||||+|+++|+             +|+|......+.++++.++..+.++|
T Consensus       408 Ld~vi~-~~~pl~~~~~~~~~~R~IGlGv~Glad~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a  486 (713)
T TIGR02505       408 AKRVTF-SPYDDEISREIIQKNRRIGVSMSGIQDFLLLRGGTGFKDDFDPETHEAIKVRVYDKRAAKFLDRMYKIVVKAA  486 (713)
T ss_pred             HHHHHh-ccCChHHHHHHHHhcCCceeehhhHHHHHHHcCCcccccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence            999995 5799999999999999999999999999999998             77777777788888888999999999


Q ss_pred             HHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccc
Q psy1689         343 CEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN  422 (998)
Q Consensus       343 ~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~  422 (998)
                      .++|+++|.                                        .||+.+|+||||||+|+|+|+|+||||+||+
T Consensus       487 ~~~s~elg~----------------------------------------~r~~~~TTIaPTGTiS~laG~S~GIeP~~A~  526 (713)
T TIGR02505       487 QDYSKELGC----------------------------------------PEPIKHTTVKPSGTISKLAGASEGIHPPYGA  526 (713)
T ss_pred             HHHHHHhCC----------------------------------------CCccceeeeCCccchHHhcCCCCccCcchhh
Confidence            999999995                                        2688999999999999999999999999999


Q ss_pred             eEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCccc----ccCCCChhh----hhhccccc--CCChHHHHH
Q psy1689         423 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQ----DIEGIPQKL----KDLYKTVW--EIPQKTVLD  492 (998)
Q Consensus       423 ~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~----~~~~lp~~~----k~~f~tA~--ei~~~~~I~  492 (998)
                      +|+|++.    +.+|++|.+.|++.||+.+..... ....|...    .+..+|.+.    ..-..+|.  |+++.+|++
T Consensus       527 ~y~Rri~----~~~ndpl~~~l~~~Gy~~~p~~~~-~~~~~~~~~~~~~~ve~p~~~~~~~~~~~~~a~~~diS~~~ql~  601 (713)
T TIGR02505       527 YLIRRIT----FSKSDPLAPALKACGYTVEADQYD-KNEQGRLPPCKTTLVEFPIKAVGADNPNIAEVGINTVSAAAQFA  601 (713)
T ss_pred             heeeeee----eecCcHHHHHHHHcCCCCCccccc-cccccccccccceeEEeeecccccCCCCCcccccccCCHHHHHH
Confidence            9999983    468999999999999987632111 00011110    011122211    01123455  999999999


Q ss_pred             HHHHhCC-ccccccceeEeecCCCHHHHHHHHHHHHHcC
Q psy1689         493 MAADRGA-FIDQSQSLNIYMAEINYAKMSSMHFHGWKLG  530 (998)
Q Consensus       493 m~a~~Q~-~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~G  530 (998)
                      +|+..|+ |+|+++|+||++++...++|..++.++|+..
T Consensus       602 ~qa~~Q~~~~DnavS~Tin~~~~e~e~v~~~~~~~~~~~  640 (713)
T TIGR02505       602 FYAFLQTYWSDNNVSCTITFDPSEGEQVESALRQYRDNS  640 (713)
T ss_pred             HHHHHhHhhhhccCceeEecChHHHHHHHHHHHHHHHhh
Confidence            9999999 8999999999999766999999999999844

This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (RNR) related to the characterized species from Lactococcus leichmannii. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Thus model identifies NrdJ enzymes only in cyanobacteria, lactococcus and certain bacteriophage. A separate model (TIGR02504) identifies a larger group of divergent B12-dependent RNR's.

>PRK09103 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=5.7e-55  Score=529.02  Aligned_cols=231  Identities=27%  Similarity=0.408  Sum_probs=207.7

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ...|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.||||.|....
T Consensus       505 ~~~R~IGLGvmGlad~L~~lgi~Y~S~eA~~l~~~i~e~i~~~A~~aS~eLAkErG~fp~f~~S~~~~G~~~~~~~~~~~  584 (758)
T PRK09103        505 MGRRTLGIGVINFAYYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDL  584 (758)
T ss_pred             hhcCccccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhcCCchhhhhhhhc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999998774321


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                      .+                             .                                                
T Consensus       585 ~~-----------------------------~------------------------------------------------  587 (758)
T PRK09103        585 DA-----------------------------I------------------------------------------------  587 (758)
T ss_pred             cc-----------------------------c------------------------------------------------
Confidence            00                             0                                                


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                                    .+....++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus       588 ------------------------------~~~~~~~dW~~Lr~~i~~~GlRNs~l~AiaPTgS~S~i~g~s~giEP~~s  637 (758)
T PRK09103        588 ------------------------------CNEPLHYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG  637 (758)
T ss_pred             ------------------------------ccccchhhHHHHHHHHHHhCccccceeecCCcHHHHHHhCcCCCcCcccc
Confidence                                          00013479999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCC-ChHhHHHHHHHhCCc
Q psy1689         826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI-PQKTVLDMAADRGAF  904 (998)
Q Consensus       826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei-~~~~~I~m~a~~Q~~  904 (998)
                      |+|+|++.+|.+..++|.+.                                +++..|+++|+| +|+++|+|+|+||||
T Consensus       638 ~~~~k~~~~g~~~~~~p~~~--------------------------------~~~~~y~~~~~i~~~~~~I~~~A~rQ~~  685 (758)
T PRK09103        638 YVSIKASKDGILKQVVPDYE--------------------------------RLKDAYELLWEMPNNDGYLQLVGIMQKF  685 (758)
T ss_pred             ceeeeeccCceeeecCCCHH--------------------------------HHHHHHHHHHhccChHHHHHHHHHHhhh
Confidence            99999999998877777652                                234678999999 589999999999999


Q ss_pred             ccccccceeecC-C------CCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhh
Q psy1689         905 IDQSQSLNIYMA-E------INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID  956 (998)
Q Consensus       905 iDqsiS~tl~~~-~------~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~  956 (998)
                      ||||||+|||++ +      ++.++|.++|++|||+|||| +||+|++++++++|||+.
T Consensus       686 VDQsqS~nl~~~~~~~~~~~~t~~~l~~~~~~Aw~~GlKT-~YY~rs~~~~~~~~~~~~  743 (758)
T PRK09103        686 VDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKFGVKT-LYYHNTRDGAEDAQDDLQ  743 (758)
T ss_pred             cchhhcceeeecccccccCCCCHHHHHHHHHHHHHhCCce-EeecCchhhhhhhhhhcc
Confidence            999999999984 3      68999999999999999999 799999999999999987

>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=6.3e-55  Score=524.82  Aligned_cols=234  Identities=22%  Similarity=0.389  Sum_probs=202.3

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCccCcCcccccccCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYDMWGVT  664 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G-~fp~f~~s~~~~g~l~~d~~~~~  664 (998)
                      ...|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+| +||.|++|+|++|.+ ||.|...
T Consensus       455 ~~~R~IGLGvmGLad~La~~gi~Y~S~eA~~~~~~ife~i~~~A~~aS~eLAkE~G~~f~~f~~S~~~~G~~-f~~~~~~  533 (699)
T PRK07632        455 SELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANTFFMMMNFYSIERSMEIAKERGETYQDFEKSDYANGKY-FEKYTTQ  533 (699)
T ss_pred             hccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccCcChhhccch-Hhhhhhc
Confidence            35689999999999999999999999999999999999999999999999999999 999999999999998 7776432


Q ss_pred             CccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHH
Q psy1689         665 PTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEI  744 (998)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  744 (998)
                      +     |.                          |.               .+.+.++++                    
T Consensus       534 ~-----~~--------------------------~~---------------~~~v~~~~~--------------------  547 (699)
T PRK07632        534 D-----FE--------------------------PK---------------FEKVRELFE--------------------  547 (699)
T ss_pred             c-----cc--------------------------hh---------------hhhhhhhhc--------------------
Confidence            1     10                          00               000101110                    


Q ss_pred             HHHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccccc
Q psy1689         745 IMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYT  824 (998)
Q Consensus       745 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~  824 (998)
                                             |     ..+|  +.++|++|+++|++||+|||+++|||||||||+|+|||+||||++
T Consensus       548 -----------------------~-----~~~~--~~~dW~~L~~~i~k~GlRNs~l~AiAPTgSiS~i~g~s~siePi~  597 (699)
T PRK07632        548 -----------------------G-----MHIP--TKEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIV  597 (699)
T ss_pred             -----------------------c-----cCCC--chhhHHHHHHHHHHhCcccccccccCCchHHHHHhCCCccHHHHH
Confidence                                   0     0122  468999999999999999999999999999999999999999999


Q ss_pred             cceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCc
Q psy1689         825 SNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF  904 (998)
Q Consensus       825 a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~  904 (998)
                      ++++.|+...                               .++++++|+||++.+++|+|||||+|++||+|+|++|||
T Consensus       598 s~i~~r~~~~-------------------------------~~~~~~~p~l~~~~~~~y~tA~ei~~~~~I~~~A~~Q~~  646 (699)
T PRK07632        598 DQIERRTYGN-------------------------------AETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTH  646 (699)
T ss_pred             HHHHhhhcCC-------------------------------CCceeeCccCCHHHHHHhccHhhCCHHHHHHHHHHHccc
Confidence            9988765421                               356678999999999999999999999999999999999


Q ss_pred             ccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccc
Q psy1689         905 IDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA  948 (998)
Q Consensus       905 iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~  948 (998)
                      ||||||+||||| ++|.+||.++|++|||+|||| +||+|+++.+
T Consensus       647 IDQsiS~tl~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~Rt~~~~  690 (699)
T PRK07632        647 IDQGISTILYVNSEISTRELARLYVYAHHKGLKS-LYYTRNKLLS  690 (699)
T ss_pred             chhhhcCceecCCCCCHHHHHHHHHHHHHcCCCe-EEEeeccccc
Confidence            999999999999 679999999999999999999 8999997765

>PHA02572 nrdA ribonucleoside-diphosphate reductase subunit alpha; Provisional

Probab=100.00  E-value=1.1e-54  Score=526.92  Aligned_cols=230  Identities=26%  Similarity=0.415  Sum_probs=207.1

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ...|+||||+|||||+|++|||||+|+|| +|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.||+|.|...+
T Consensus       502 ~~~R~IGLGv~Glad~L~~lgi~Y~S~eA-~l~~~i~e~i~~~A~~aS~eLAkE~G~~p~f~~S~~~~G~~~~~~~~~~~  580 (753)
T PHA02572        502 KKRRSLGVGVTNYAHYLAKNFASYEDANA-DLVHELFERLQYYLIKASNKLAKEKGACEYFSDTKYSRGELPIDWYKKKV  580 (753)
T ss_pred             hhcCccccchhHHHHHHHHCCCCcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChhhcccchhhcccchh
Confidence            45789999999999999999999999999 99999999999999999999999999999999999999999998775321


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                      ..                                                      +                       
T Consensus       581 ~~------------------------------------------------------~-----------------------  583 (753)
T PHA02572        581 DE------------------------------------------------------L-----------------------  583 (753)
T ss_pred             hh------------------------------------------------------h-----------------------
Confidence            00                                                      0                       


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                                    .++...++|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus       584 ------------------------------~~~~~~~dW~~L~~~i~~~GlRNs~l~AiaPT~S~S~i~g~s~giEP~~s  633 (753)
T PHA02572        584 ------------------------------VAPKYNCDWESLREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRG  633 (753)
T ss_pred             ------------------------------cccchhhhHHHHHHHHHHhCccccceeeeCCcHHHHHHhCCCCccCcccc
Confidence                                          00113479999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCC---ChHhHHHHHHHhC
Q psy1689         826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI---PQKTVLDMAADRG  902 (998)
Q Consensus       826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei---~~~~~I~m~a~~Q  902 (998)
                      ++|+|++.+|+|.++||++.                                +++++|+|||||   +|+++|+|||+||
T Consensus       634 ~~~~r~~~~G~~~~~~p~l~--------------------------------~~~~~ykta~~i~~~~~~~~i~~~A~rq  681 (753)
T PHA02572        634 PVSIKKSKEGPFNQVVPNVE--------------------------------TLKDLYDLLWDLAKKGNKGYLTQVAIMQ  681 (753)
T ss_pred             cEEEEEecCceEEEeCCCHH--------------------------------HHHHHHHhHHHhcccChHHHHHHHHHHh
Confidence            99999999999999999862                                235789999999   9999999999999


Q ss_pred             CcccccccceeecCC-------CCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhh
Q psy1689         903 AFIDQSQSLNIYMAE-------INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID  956 (998)
Q Consensus       903 ~~iDqsiS~tl~~~~-------~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~  956 (998)
                      ||||||||+|||++.       .+.++|.++|++|||+|||| +||+|++++++++-..+.
T Consensus       682 ~~IDQsqS~nl~~~~~~~~~~~~~~~~l~~~~~~Aw~~GlKT-~YY~rt~~~~~~~~~~~~  741 (753)
T PHA02572        682 KFVDQAISANTSYDPENYPNGKVPMSVMLDDLLYFYYYGGKT-LYYHNTRDGKGTEDYEIE  741 (753)
T ss_pred             ccCchhhcceeeecCCcCcccccCHHHHHHHHHHHHHhCCce-EeecCccccccccccccc
Confidence            999999999999852       47899999999999999999 799999999988766554

>PRK09209 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=1e-54  Score=527.69  Aligned_cols=214  Identities=28%  Similarity=0.473  Sum_probs=196.1

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ...|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.+ ||.|+.  
T Consensus       537 ~~~R~IGLGv~Glad~L~~lgi~Y~S~eA~~~~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~g~~-~~~~~~--  613 (761)
T PRK09209        537 QKYRAIGLGTFGWHHLLALKGIAWESEEAVQYADELYERINYLTIQASMELAKEKGAYPVFKGSDWQTGEY-FERRGY--  613 (761)
T ss_pred             HhccccccchhhHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhccch-hhhcCC--
Confidence            45789999999999999999999999999999999999999999999999999999999999999999986 443210  


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                                                                                                      
T Consensus       614 --------------------------------------------------------------------------------  613 (761)
T PRK09209        614 --------------------------------------------------------------------------------  613 (761)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                                        ..++|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus       614 ----------------------------------~~~~W~~L~~~i~~~GlRNs~l~AiAPT~StS~i~g~t~giEP~~s  659 (761)
T PRK09209        614 ----------------------------------NSPQWDELAAQVAENGVRNAYLMAVAPNMSTAQIAGSTASIDPIYS  659 (761)
T ss_pred             ----------------------------------chhhHHHHHHHHHHhCcchhceeeeCCcHHHHHHcCCCCccCcchh
Confidence                                              1247999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhh-cccCCCChHhHHHHHHHhCCc
Q psy1689         826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY-KTVWEIPQKTVLDMAADRGAF  904 (998)
Q Consensus       826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f-~tA~ei~~~~~I~m~a~~Q~~  904 (998)
                      ++|.|+..+|.+.++                               ++.||++.+++| +|||||+|++||+|||++|||
T Consensus       660 ~~y~r~~~~~~~~~~-------------------------------~p~l~~~~~~~y~~tA~ei~~~~~I~~~A~rQ~~  708 (761)
T PRK09209        660 AFYYEEKKDYRRPVT-------------------------------APDLSLDTWPYYEKGAYKVDQFWSIRQNAARQRH  708 (761)
T ss_pred             hHhhhhhccceeecc-------------------------------CCCCChhHHHHHhhhHhhCCHHHHHHHHHHHccc
Confidence            999998877766543                               455788889999 999999999999999999999


Q ss_pred             ccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccc
Q psy1689         905 IDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA  948 (998)
Q Consensus       905 iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~  948 (998)
                      ||||||+||||| +.+.++|.++|++|||+|||| +||+|+++..
T Consensus       709 IDQsiS~nl~~~~~~~~~~l~~~y~~Awk~GlKt-~YY~Rt~~~~  752 (761)
T PRK09209        709 VDQSISFNFYVPSTIRASELLDLHMTAWKEGLKT-TYYVRSTDID  752 (761)
T ss_pred             ccccccCceeCCCCCCHHHHHHHHHHHHHhCCCe-EEEeeccCcc
Confidence            999999999999 678999999999999999999 7999997764

>PRK07187 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=1.3e-54  Score=523.62  Aligned_cols=238  Identities=24%  Similarity=0.378  Sum_probs=196.6

Q ss_pred             CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCCc
Q psy1689         587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT  666 (998)
Q Consensus       587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~~  666 (998)
                      ..|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|.+ ||.|.....
T Consensus       458 ~~R~IGLGvmGlad~La~lgi~Y~S~eA~~~~~~i~e~i~~~A~~aS~eLAkErG~fp~f~~S~~~~G~~-~~~~~~~~~  536 (721)
T PRK07187        458 ANHAVGLGAMNLHGFLATNHIYYDSKEAVDFTDLFFYTMAYYAFKASNQLAKEKGAFAGFELSKYADGSY-FDKYTKEDA  536 (721)
T ss_pred             hcCcccchHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhccch-hhhhhhccc
Confidence            4689999999999999999999999999999999999999999999999999999999999999999987 565543211


Q ss_pred             cchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHHH
Q psy1689         667 DLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM  746 (998)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  746 (998)
                      +.|  .                          |.               ...+++++..    .                
T Consensus       537 ~~~--~--------------------------~~---------------~~~~~~~~~~----~----------------  553 (721)
T PRK07187        537 KKW--T--------------------------PK---------------TAKVKELLQK----Y----------------  553 (721)
T ss_pred             ccc--C--------------------------cc---------------hhhhhhhhhh----c----------------
Confidence            100  0                          10               0011111100    0                


Q ss_pred             HhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccccccc
Q psy1689         747 KNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN  826 (998)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a~  826 (998)
                                           |     ..+|  ..++|++|+++|++||+|||+++|||||||||+|+|||+||||+|++
T Consensus       554 ---------------------~-----~~~~--~~~~W~~L~~~i~k~GlRNs~l~AiAPTgSiS~i~g~s~gIEP~~s~  605 (721)
T PRK07187        554 ---------------------G-----VTIP--TQADWQELVEDIKKTGLANSHLLAVAPTGSISYLSSCTPSLQPVVAP  605 (721)
T ss_pred             ---------------------c-----cccc--chhhHHHHHHHHHHhCcccceeeeeCCcchHHHHhCCCcchhHhhhh
Confidence                                 0     0112  46799999999999999999999999999999999999999999999


Q ss_pred             eEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhh-cccCCCChHhHHHHHHHhCCcc
Q psy1689         827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY-KTVWEIPQKTVLDMAADRGAFI  905 (998)
Q Consensus       827 ~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f-~tA~ei~~~~~I~m~a~~Q~~i  905 (998)
                      +|+|+..++..+.+                              +.+.+|++.+++| +|||||+|++||+|||++||||
T Consensus       606 ~~~R~~~~~~~~~~------------------------------~~~~l~~~~~~~y~~tA~eI~~~~~I~~~A~~Qk~I  655 (721)
T PRK07187        606 VEVRKEGKLGRIYV------------------------------PAYKIDQDNYAYYERGAYEVGPKPIIDIVAAAQKHV  655 (721)
T ss_pred             hheeeccCCceEEc------------------------------ccccCCHHHHHHHhhhHHhcCHHHHHHHHHHHhhhc
Confidence            99998654332222                              2334677788899 9999999999999999999999


Q ss_pred             cccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCcc
Q psy1689         906 DQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPA  947 (998)
Q Consensus       906 DqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~  947 (998)
                      |||||+||||| ++|.+||.++|++|||+|||| +||+|+.+.
T Consensus       656 DqsiS~tl~~~~~~t~~dl~~~y~~Awk~GlKt-~YY~Rt~~~  697 (721)
T PRK07187        656 DQAISLTLFMTDQATTRDLNKAYIQAFKQKCAS-IYYVRVRQD  697 (721)
T ss_pred             cccccceeeCCCCCCHHHHHHHHHHHHHcCCCE-EEEEeehhh
Confidence            99999999999 679999999999999999999 788898443

>PRK07088 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=5e-54  Score=521.16  Aligned_cols=214  Identities=27%  Similarity=0.482  Sum_probs=191.6

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ...|+||||||||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.+ ||+|+.  
T Consensus       541 ~~~R~IGLGvmGlad~La~lgi~Y~S~eA~~l~~~i~e~i~~~A~~aS~eLAkE~G~yp~f~~S~~~~g~~-~~~~~~--  617 (764)
T PRK07088        541 DKYRAIGLGTSGYHHMLANNKIRWESDEHIKFADKIYEEIAYYAIKASMELAKEKGSYPAFKGSEWETGKY-FERRGY--  617 (764)
T ss_pred             HhcCccceeHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhccch-hhcccc--
Confidence            45789999999999999999999999999999999999999999999999999999999999999999976 443210  


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                                                                                                      
T Consensus       618 --------------------------------------------------------------------------------  617 (764)
T PRK07088        618 --------------------------------------------------------------------------------  617 (764)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                                        ...+|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus       618 ----------------------------------~~~~W~~L~~~i~~~GlRNs~l~AiAPT~StS~i~g~s~giEP~~~  663 (764)
T PRK07088        618 ----------------------------------NSERWKKLKEEIKKYGMRNGYITAVAPTGSTSNIANTTAGIDPVFK  663 (764)
T ss_pred             ----------------------------------ccccHHHHHHHHHHhCccccccccCCCCcchhhhcCCCCcccchhh
Confidence                                              1237999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689         826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI  905 (998)
Q Consensus       826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i  905 (998)
                      ++|+|+.. |.+..                              +.++.||++.+++|+|||||+|+|||+|||++||||
T Consensus       664 ~~~~r~~~-g~~~~------------------------------~~~~~l~~~~~~~y~tA~ei~~~~~I~~~A~rQ~~I  712 (764)
T PRK07088        664 RFFMEEKK-GSFTP------------------------------KTAPDLNEENFWYYKEAHTIDQQWSIKACGVRQRHI  712 (764)
T ss_pred             hHhhhhcC-Cceee------------------------------cCCcccCHHHHHHhchHHhCCHHHHHHHHHHHcccc
Confidence            99987532 22210                              135678888889999999999999999999999999


Q ss_pred             cccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccc
Q psy1689         906 DQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA  948 (998)
Q Consensus       906 DqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~  948 (998)
                      |||||+||||| +++.++|.++|++|||+|||| +||+|+++..
T Consensus       713 DqsiS~nl~~~~~~t~~~l~~~y~~Awk~GlKt-~yY~R~~s~~  755 (764)
T PRK07088        713 DQAQSFNLYITPEYKAKQILNLYIEAWKQGVKT-IYYVRNKSLE  755 (764)
T ss_pred             cccccCceecCCCCCHHHHHHHHHHHHHcCCCE-EEEEecCCcc
Confidence            99999999999 789999999999999999999 5888887765

>PRK08188 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=7.2e-53  Score=507.25  Aligned_cols=236  Identities=24%  Similarity=0.404  Sum_probs=198.1

Q ss_pred             CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCccCcCcccccccCCCC
Q psy1689         587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G-~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ..|+||||+|||||+|+++||+|+|+||++|+++||+.|+|+|+++|++||+|+| +||.|++|+|++|.+ ||.|... 
T Consensus       463 ~~R~IGLGvmGl~~~La~~gi~Y~S~ea~~~~~~ife~i~y~A~~aS~eLAkErG~~f~~f~~S~~~~G~~-f~~y~~~-  540 (714)
T PRK08188        463 ASHAIGLGQMNLHGYLAREGIFYGSEEALDFTNIYFYTVTYHALRASNLLARERGETFAGFEQSKYASGEY-FDKYTQQ-  540 (714)
T ss_pred             hcCChhccHhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccChhhccch-hhhcchh-
Confidence            4689999999999999999999999999999999999999999999999999999 699999999999988 5544221 


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                          +|.                          |.               .+.+.++++.                    
T Consensus       541 ----~~~--------------------------~~---------------~~~v~~~~~~--------------------  555 (714)
T PRK08188        541 ----DWQ--------------------------PK---------------TAKVRELFAR--------------------  555 (714)
T ss_pred             ----ccC--------------------------cc---------------hhhhhhhhhh--------------------
Confidence                111                          00               0001111100                    


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                                ....+|  +.++|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus       556 --------------------------~~~~~p--~~~~W~~L~~~i~~~GlRNs~l~AiAPTgSiS~i~~~T~sIePi~s  607 (714)
T PRK08188        556 --------------------------AGITIP--TQEDWAQLRDDVMRHGIYNQNLQAVPPTGSISYINHSTSSIHPIVS  607 (714)
T ss_pred             --------------------------cccCCC--cHHhHHHHHHHHHHhCcccceeeeeCCcchHHHHcCCCCCcCcchh
Confidence                                      001122  4678999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccc-cceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCc
Q psy1689         826 NIYSRRVLS-GEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF  904 (998)
Q Consensus       826 ~~~~r~~~~-G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~  904 (998)
                      ++|.|+... |++..++|+                               ++++.+++|+|||||+|++||+|+|++|||
T Consensus       608 ~v~~R~~~~~g~~~~~~p~-------------------------------l~~~~~~~y~tA~ei~~~~~I~~~A~~Qk~  656 (714)
T PRK08188        608 KIEIRKEGKIGRVYYPAPY-------------------------------MTNDNLEYYQDAYEIGPEKIIDTYAAATQH  656 (714)
T ss_pred             hheeeeccccceEEeeCcc-------------------------------cchhhHhHhCcHHhCCHHHHHHHHHHHccc
Confidence            999998643 666655544                               455567899999999999999999999999


Q ss_pred             ccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCcccc
Q psy1689         905 IDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN  949 (998)
Q Consensus       905 iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~  949 (998)
                      ||||||+||||| ++|.+||.++|++||++|||| +||+|+++...
T Consensus       657 VDQsiS~tl~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~R~~~~~~  701 (714)
T PRK08188        657 VDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKT-LYYIRLRQMAL  701 (714)
T ss_pred             chhhhcCceecCCCCCHHHHHHHHHHHHHcCCCe-EEEEeeccccc
Confidence            999999999999 679999999999999999999 69999966653

>PRK07306 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=100.00  E-value=8.6e-53  Score=508.46  Aligned_cols=233  Identities=24%  Similarity=0.414  Sum_probs=196.4

Q ss_pred             CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCccCcCcccccccCCCC
Q psy1689         587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G-~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ..|+||||+|||||+|++|||+|+|+||++|+++||+.|+|+|+++|++||+|+| +||.|++|+|++|.+ ||.|...+
T Consensus       457 ~~R~IGLGvmGla~~La~~gi~Y~S~eA~~~~~~i~e~i~y~A~~aS~eLA~ErG~~fp~f~~S~~~~G~~-f~~~~~~~  535 (720)
T PRK07306        457 QAHTIGLGAMGLHSYLAQNHIEYGSPESLEFTSIYFMLLNYWTLVASNNIARERGETFHNFEKSKYADGSY-FDKYVTGD  535 (720)
T ss_pred             hcCchhhhHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcChhhccch-hhhhhhcc
Confidence            5689999999999999999999999999999999999999999999999999999 799999999999998 77764321


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                           |.                          |.               .+.+.++++      |              
T Consensus       536 -----~~--------------------------~~---------------~~~v~~~~~------~--------------  549 (720)
T PRK07306        536 -----FV--------------------------PK---------------SDKVKELFK------G--------------  549 (720)
T ss_pred             -----cC--------------------------cc---------------hhhHHHhhh------c--------------
Confidence                 00                          10               001111110      0              


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                                  ..+|  ..++|++||++|++||+|||+++|||||||||+|+|||+||||+|+
T Consensus       550 ----------------------------~~~p--~~~~W~~Lr~~i~~~GlRNs~l~AiAPTgSiS~i~g~S~gIePi~s  599 (720)
T PRK07306        550 ----------------------------IFIP--TAADWAALRDAVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITQ  599 (720)
T ss_pred             ----------------------------cCCC--chhhHHHHHHHHHHhCcccccceeeCCccHHHHHhCCCCccccchh
Confidence                                        0122  4678999999999999999999999999999999999999999999


Q ss_pred             ceEEEEcc-ccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCc
Q psy1689         826 NIYSRRVL-SGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF  904 (998)
Q Consensus       826 ~~~~r~~~-~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~  904 (998)
                      ++|+|+.. .|++.                               +..+.||++.+++|+|||||+|++||+|||++|||
T Consensus       600 ~v~~r~~~~~g~~~-------------------------------~~~p~l~~~~~~~f~tA~ei~~~~~I~~~A~~Qk~  648 (720)
T PRK07306        600 RIEERQEKKIGKIY-------------------------------YPAPGLSTETIPYYTSAYDMDMRKVIDVYAAATEH  648 (720)
T ss_pred             hHhhhhhhcCCcee-------------------------------ccCCCCchhHHHHhCcHHhCCHHHHHHHHHHHhcc
Confidence            99988632 13322                               23567888889999999999999999999999999


Q ss_pred             ccccccceeecC-CC--------------CHHHHHHHHHHHHHcCCcEEEEEecCCccc
Q psy1689         905 IDQSQSLNIYMA-EI--------------NYAKMSSMHFHGWKLGLKTGMYYLRTKPAA  948 (998)
Q Consensus       905 iDqsiS~tl~~~-~~--------------~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~  948 (998)
                      ||||||+||||| ++              +.+||.++|++|||+|||| +||+|+.+..
T Consensus       649 VDQsiS~tl~~~~~~~~~~~~~~~~~~~~t~~~l~~~~~~Awk~GlKt-~YY~Rt~~~~  706 (720)
T PRK07306        649 VDQGLSLTLFMRSTLPKGLYEWKDRTNKMTTRDLSILRNYAFNKGIKS-IYYIRTFTDD  706 (720)
T ss_pred             chhhhcCccccCCccccccccccccccCCCHHHHHHHHHHHHHcCCCe-EEEEeecccc
Confidence            999999999998 43              7899999999999999999 5998986654

>PRK12364 ribonucleotide-diphosphate reductase subunit alpha; Provisional

Probab=100.00  E-value=9.9e-53  Score=517.20  Aligned_cols=213  Identities=29%  Similarity=0.499  Sum_probs=191.9

Q ss_pred             ccCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCC
Q psy1689         585 RRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT  664 (998)
Q Consensus       585 ~~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~  664 (998)
                      +...|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.+ ||.|+. 
T Consensus       618 n~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~E~G~~~~f~~S~~~~g~~-~~~~~~-  695 (842)
T PRK12364        618 NKRYRSIGLGVSGYHHALAKNGIRWESEEHLEFADRVFERINYAAIKASMEIAKEKGAYGYFEGSDWQTGAY-FRKRGY-  695 (842)
T ss_pred             HHhccccccchHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhccch-hhccCc-
Confidence            346789999999999999999999999999999999999999999999999999999999999999999986 443210 


Q ss_pred             CccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHH
Q psy1689         665 PTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEI  744 (998)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  744 (998)
                                                                                                      
T Consensus       696 --------------------------------------------------------------------------------  695 (842)
T PRK12364        696 --------------------------------------------------------------------------------  695 (842)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccccc
Q psy1689         745 IMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYT  824 (998)
Q Consensus       745 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~  824 (998)
                                                         ...+|++|+++|++||+|||+++|||||||||+|+|+|+||||+|
T Consensus       696 -----------------------------------~~~~W~~L~~~i~~~GlRNs~l~AiaPT~S~S~i~g~s~gieP~~  740 (842)
T PRK12364        696 -----------------------------------TSEEWQRLAREVAENGMRNAYLLAVAPTSSTSIIAGTTAGVDPVM  740 (842)
T ss_pred             -----------------------------------chhhHHHHHHHHHHhCcchhheeccCCcHHHHHHcCCCCccCcch
Confidence                                               124899999999999999999999999999999999999999999


Q ss_pred             cceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCcc--ccCCCCChhhHhhhcccCCCChHhHHHHHHHhC
Q psy1689         825 SNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSI--QDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG  902 (998)
Q Consensus       825 a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv--~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q  902 (998)
                      +++|+++..                                 |++  +.++.+|++.+++|+|||||+|++||+|||++|
T Consensus       741 ~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~~~~y~tA~ei~~~~~I~~~A~~Q  787 (842)
T PRK12364        741 KRYFLEEKK---------------------------------GALMPRVAPELSDKTFWLYKNAHLIDQKWSIRAAGVRQ  787 (842)
T ss_pred             HhHHHHhhc---------------------------------CCcccccCccCCHHHHHHhccHhcCCHHHHHHHHHHHh
Confidence            988765421                                 222  236788999999999999999999999999999


Q ss_pred             CcccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccc
Q psy1689         903 AFIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA  948 (998)
Q Consensus       903 ~~iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~  948 (998)
                      ||||||||+||||| ++|.++|.++|++|||+|||| +||+|+++..
T Consensus       788 ~~IDqsiS~nl~~~~~~t~~~l~~~y~~Awk~GlKt-~yy~R~~~~~  833 (842)
T PRK12364        788 RHIDQAQSVNLYITNEFTMRQVLDLYLLAWEEGVKT-IYYVRSKSLE  833 (842)
T ss_pred             ccchhhccCceecCCCCCHHHHHHHHHHHHHcCCCE-EEEEccCCcc
Confidence            99999999999999 689999999999999999999 6888987764

>PRK06948 ribonucleotide reductase-like protein; Provisional

Probab=100.00  E-value=4.3e-52  Score=495.95  Aligned_cols=230  Identities=23%  Similarity=0.301  Sum_probs=198.8

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ..+|+||||+|||||+|++|||||+|+||++|+++||++|+++|+++|++||+|+|+||.|++|+|.+|.+.        
T Consensus       360 ~~~R~IGLGvmGlad~L~~lgi~Y~S~ea~~~~~~i~~~i~~~A~~aS~eLA~ErG~fp~f~~s~~~~~~~~--------  431 (595)
T PRK06948        360 RQKRRIGVGVTGLADALTMMRLRYDSPAAREMARYIASDLRHHAYAASAALAAERGAYPLCDPAAHLDALRA--------  431 (595)
T ss_pred             hcCCCceecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhccccc--------
Confidence            367999999999999999999999999999999999999999999999999999999999999998765320        


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                                                                                                      
T Consensus       432 --------------------------------------------------------------------------------  431 (595)
T PRK06948        432 --------------------------------------------------------------------------------  431 (595)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhc--CCCcccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQIL--GNNESFEPY  823 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~--g~s~giEP~  823 (998)
                                                        ....|.+|+++|++||+|||++||||||||||+|+  |||+||||+
T Consensus       432 ----------------------------------~~~~~~~l~~~i~~~G~RNs~ltaIAPTgSiS~i~~~~~S~GieP~  477 (595)
T PRK06948        432 ----------------------------------GPPLPHAVCHAIARHGLRNSHLLSFAPVGSVSLAFGDNCSPGIEPA  477 (595)
T ss_pred             ----------------------------------cccCcHHHHHHHHHhCcchhheeeeCCcHHHHHHhcCCCCCCcccc
Confidence                                              00136899999999999999999999999999998  489999999


Q ss_pred             ccceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCC
Q psy1689         824 TSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA  903 (998)
Q Consensus       824 ~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~  903 (998)
                      |+++|+|++..|++.....           +.+....      ..++.+...|.+++++|+||+||+|++||+|||++||
T Consensus       478 fa~~y~R~~~~g~~~~~~~-----------~~~~~~~------~~~~~~~~~~~~~~~~f~tA~di~~~~~i~~~A~~Qk  540 (595)
T PRK06948        478 RAWIEHRPVRAGAGGARGM-----------RAENHAY------RLFRSLRGERAALPDYFVTAADVAPADHLAMRAALQP  540 (595)
T ss_pred             eeeeEEEEeccCCCcccce-----------eeechhh------hhccccCCCchhHHhhcCcHhhCCHHHHHHHHHHHcc
Confidence            9999999999887542111           1111000      1123455567788999999999999999999999999


Q ss_pred             cccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhh
Q psy1689         904 FIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT  954 (998)
Q Consensus       904 ~iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~  954 (998)
                      |||||||+||||| +++.+||.++|++||++||||+||||.+++..|++.+.
T Consensus       541 ~vDqsiS~Tvn~~~~~t~~dv~~~y~~Aw~~GlKgit~~R~~~~~~~vl~~~  592 (595)
T PRK06948        541 YVDAGISKTVTLPNHYSLAEVDALLFQAWRAGLKGITIFRPDPALDAVPSDD  592 (595)
T ss_pred             cchhhccCeEeeCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCcccCCcccCC
Confidence            9999999999999 67999999999999999999999999888888888764

>cd02888 RNR_II_dimer Class II ribonucleotide reductase, dimeric form

Probab=100.00  E-value=2.2e-47  Score=445.26  Aligned_cols=173  Identities=27%  Similarity=0.407  Sum_probs=163.8

Q ss_pred             CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCCc
Q psy1689         587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT  666 (998)
Q Consensus       587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~~  666 (998)
                      .+|+||||+|||||+|+++|++|+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.+++|       
T Consensus       291 ~~R~iGlG~~Glad~L~~~gi~y~S~ea~~~~~~i~~~i~~~a~~aS~~LA~e~G~fp~f~~s~~~~g~~~~~-------  363 (464)
T cd02888         291 ATRRIGLGVMGLADMLIKLGIPYDSEEARELAERIMSFIRDAAYRASAELAKERGPFPLFDASRYLMLKVIVN-------  363 (464)
T ss_pred             ccCceeecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcCcChhhcccchhc-------
Confidence            4689999999999999999999999999999999999999999999999999999999999999998876421       


Q ss_pred             cchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHHH
Q psy1689         667 DLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM  746 (998)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  746 (998)
                                                                                                      
T Consensus       364 --------------------------------------------------------------------------------  363 (464)
T cd02888         364 --------------------------------------------------------------------------------  363 (464)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccccccc
Q psy1689         747 KNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN  826 (998)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a~  826 (998)
                                                       ..++|++|++++++||+|||+++|||||||||+|+|+|+||||+|  
T Consensus       364 ---------------------------------~~~~w~~l~~~i~~~G~RNs~l~aiAPTgs~S~i~g~s~gieP~~--  408 (464)
T cd02888         364 ---------------------------------AKELPDDVLEEIEKYGIRNAHLTTIAPTGTISLIAGTSSGIEPIF--  408 (464)
T ss_pred             ---------------------------------chhcHHHHHHHHHHhCcchhceeeeCCcHHHHHHhCCCCCcCCCC--
Confidence                                             124699999999999999999999999999999999999999999  


Q ss_pred             eEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCccc
Q psy1689         827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFID  906 (998)
Q Consensus       827 ~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~iD  906 (998)
                                                                                     +|++||+|||++|||||
T Consensus       409 ---------------------------------------------------------------~~~~~i~~~a~~Q~~iD  425 (464)
T cd02888         409 ---------------------------------------------------------------SPEDHVRMQAALQPWVD  425 (464)
T ss_pred             ---------------------------------------------------------------CHHHHHHHHHHHhccch
Confidence                                                                           89999999999999999


Q ss_pred             ccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecC
Q psy1689         907 QSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRT  944 (998)
Q Consensus       907 qsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~  944 (998)
                      ||||+|||+| ++|++||.++|++||++||||+||||++
T Consensus       426 qsiS~tin~~~~~t~~d~~~~y~~aw~~G~K~~t~yR~g  464 (464)
T cd02888         426 GAISKTINLPNDATVEDVEAVYLLAWKLGLKGITVYRDG  464 (464)
T ss_pred             hhhcceeecCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence            9999999999 8899999999999999999999999753

Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Many, bu

>COG0209 NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]

Probab=100.00  E-value=3.3e-46  Score=452.32  Aligned_cols=225  Identities=38%  Similarity=0.606  Sum_probs=205.7

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ..+|.||||+|||||+|+++||||+|+||++|++++|++|+++|+++|++||+|+|+|+.|.+|.|++|.++.|.+..  
T Consensus       421 ~~~R~iGlGvmgl~~~La~~~i~y~S~ea~~~~~~~~e~i~~~a~~aS~elA~e~G~~~~f~~s~~~~g~~~~~~~~~--  498 (651)
T COG0209         421 AESRAIGLGVMGLADLLAQLGIPYGSEEALKFNDRLFEYIAYYALKASAELAKERGPYPYFEGSRWARGILPIDYPRL--  498 (651)
T ss_pred             hhcCccccchhhHHHHHHhCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhccccccchhhh--
Confidence            357889999999999999999999999999999999999999999999999999999988999999999987543100  


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                                                                                                      
T Consensus       499 --------------------------------------------------------------------------------  498 (651)
T COG0209         499 --------------------------------------------------------------------------------  498 (651)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                          . |       .   . ++|+.|++++++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus       499 --------------------~-~-------~---~-~~w~~l~~~v~~~G~rns~~~aiaPtgsiS~i~~~t~~IeP~~~  546 (651)
T COG0209         499 --------------------F-G-------I---T-EDWEKLREDIKKHGLRNSYLTAIAPTGSISYIAGTTSGIEPIFA  546 (651)
T ss_pred             --------------------c-c-------c---c-ccHHHHHHHHHHhCcccccceeeCCccchhHhhCCCCCcCcChh
Confidence                                0 0       0   1 68999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689         826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI  905 (998)
Q Consensus       826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i  905 (998)
                      ++|.|....|.+.++++++.+++...                               |..|+||+|.+||+|+|++|+||
T Consensus       547 ~~~~r~~~~g~~~~~~~~l~~~~~~~-------------------------------~~~a~~i~~~~~i~~~a~~q~~i  595 (651)
T COG0209         547 LVYFRETKGGRFYYVVPPLFEDLLAY-------------------------------YGLAYEIDPLWHIDMQAAAQRWI  595 (651)
T ss_pred             heeeEecccceEEEeCcHHHHHHHHh-------------------------------hhhhhccChHHHHHHHHHhhccc
Confidence            99999888899999999988766533                               33499999999999999999999


Q ss_pred             cccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhh
Q psy1689         906 DQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID  956 (998)
Q Consensus       906 DqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~  956 (998)
                      |||||+|||+| +.+.+|+.++|++||++|||| |||+|+++.++++++..+
T Consensus       596 Dq~iS~tl~~~~~~~~~d~~~~~~~Aw~~g~K~-~yY~~~~~~~~~~~~~~~  646 (651)
T COG0209         596 DQGISKTLNLPNTATTKDLNKAYLYAWKLGLKT-TYYRRTSQAAQVLTVVLD  646 (651)
T ss_pred             ccceeeeecCCCCCCHHHHHHHHHHHHHcCCce-EEEecCcccccccccccc
Confidence            99999999999 889999999999999999999 999999999999888765

>cd01679 RNR_I Class I ribonucleotide reductase

Probab=100.00  E-value=6e-46  Score=432.36  Aligned_cols=175  Identities=55%  Similarity=0.840  Sum_probs=167.3

Q ss_pred             CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCCc
Q psy1689         587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT  666 (998)
Q Consensus       587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~~  666 (998)
                      .+|+||||+|||||+|+++|++|+|+||++++++|||.|+++|+++|++||+|+|            |            
T Consensus       285 ~~R~iGlGv~Glad~L~~~gi~y~s~ea~~~~~~i~e~i~~~a~~aS~~LA~e~G------------G------------  340 (460)
T cd01679         285 RHRAIGLGVMGLHDYLALLRIPYESEEALDLNDRIFETINYYALKASCELAKERG------------G------------  340 (460)
T ss_pred             hcCcccccchHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------C------------
Confidence            5789999999999999999999999999999999999999999999999999988            2            


Q ss_pred             cchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHHH
Q psy1689         667 DLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM  746 (998)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  746 (998)
                                                                                                      
T Consensus       341 --------------------------------------------------------------------------------  340 (460)
T cd01679         341 --------------------------------------------------------------------------------  340 (460)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccccccc
Q psy1689         747 KNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN  826 (998)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a~  826 (998)
                                                                       +|||+++|||||||||+|+|+|+||||+|++
T Consensus       341 -------------------------------------------------~RNs~l~aiaPTgs~S~l~g~S~gieP~~a~  371 (460)
T cd01679         341 -------------------------------------------------LRNSLLLAIAPTASISQILGATPSIEPITSN  371 (460)
T ss_pred             -------------------------------------------------ccccceeeeCCccHHHHhcCCCCCcCccccc
Confidence                                                             5899999999999999999999999999999


Q ss_pred             eEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCccc
Q psy1689         827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFID  906 (998)
Q Consensus       827 ~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~iD  906 (998)
                      +|+|++.+|+|.++||+|.+.|.+.|                             +|+||+||+|++||+|||++|||||
T Consensus       372 ~~~R~~~~g~~~~~n~~l~~~~~~~g-----------------------------~f~ta~di~~~~~i~~~a~~Q~~vD  422 (460)
T cd01679         372 IYVRRVLSGEFPVVNPHLEKDLWEYG-----------------------------LYKTAYEIDQRWLIDLAADRQKHID  422 (460)
T ss_pred             eeEEEccCCcEEEECHHHHHHHHHcC-----------------------------ccccHHhCCHHHHHHHHHHHccCcc
Confidence            99999999999999999998876543                             7999999999999999999999999


Q ss_pred             ccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecC
Q psy1689         907 QSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRT  944 (998)
Q Consensus       907 qsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~  944 (998)
                      ||||+|||+| +++.+||.++|++|||+||||+ ||+|+
T Consensus       423 qsiS~t~~~~~~~~~~~i~~~~~~a~~~GlK~~-YY~r~  460 (460)
T cd01679         423 QGQSLNLFLTPPATTRDLNSLYFYAWKKGLKTL-YYLRT  460 (460)
T ss_pred             cccCceeecCCCCCHHHHHHHHHHHHHcCCCeE-EEeCC
Confidence            9999999999 7799999999999999999996 99986

Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (

>cd00576 RNR_PFL Ribonucleotide reductase and Pyruvate formate lyase

Probab=100.00  E-value=3.2e-34  Score=330.86  Aligned_cols=290  Identities=18%  Similarity=0.177  Sum_probs=252.5

Q ss_pred             hhHHHHHHHHh-hhccccccccceEEEecCCc-----ccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCce
Q psy1689          73 EKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWH-----GDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQW  146 (998)
Q Consensus        73 ~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wH-----pDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W  146 (998)
                      .+|-+.+.... ...++|.|+++.+++++.||     +|+++||++|.+.+.+..+....+++|.+++.|+.+       
T Consensus        99 ~~~~~~~~~~~~~~~~~~g~~~~~~~~lg~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~sv~~~~~~~~~-------  171 (401)
T cd00576          99 VEAADAFNLALKEVGQGNGRTGAATGFIGGVHKGKGDKISQEFLNLALANGGEGIPLNFPNLSVRVSSDKPGI-------  171 (401)
T ss_pred             HHHHHHHHHHHhhhhhcCCCCceEEEEECCCCccccCHHHHHHHHHHHhcCCCCccCCCCcEEEEeecCCCCc-------
Confidence            33334333332 33455789999999999999     999999999988776666678889999987776532       


Q ss_pred             eeeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCC
Q psy1689         147 SLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNL  226 (998)
Q Consensus       147 ~Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNp  226 (998)
                                                        .++++++|++++++++++|.|+++|.                    
T Consensus       172 ----------------------------------~~~~~~l~~~~~~~~~~~g~P~~~n~--------------------  197 (401)
T cd00576         172 ----------------------------------LVKAVELKQLIAEEARKTGSPGIFND--------------------  197 (401)
T ss_pred             ----------------------------------cccHHHHHHHHHHHHHHhCCCCEEEc--------------------
Confidence                                              27889999999999999999999988                    


Q ss_pred             ccceecccCCCCcceeeecccccccccCCC---CCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccc
Q psy1689         227 CTEIVEYTSKDEVAVCNLASIALNMYINPA---DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIG  303 (998)
Q Consensus       227 C~EI~l~~~~~~~~~CNL~SINL~~~v~~~---~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLG  303 (998)
                                   .+|||+||||+++++..   ...++++.|++++++++++||++++...++.|++.+...++|++|||
T Consensus       198 -------------~~~~l~siNL~~~~~~~~~~~~~~~~~~l~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~r~~giG  264 (401)
T cd00576         198 -------------ELCNLVSLNLARIMEKAINGSMDVVLEELEELAFLAVRALDCVIDSHDERIPTIELGGDERRTVGLG  264 (401)
T ss_pred             -------------cccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHhCccCCcccccc
Confidence                         25999999999998741   12466899999999999999999999999999999888999999999


Q ss_pred             cchHHHHHHHcCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHH
Q psy1689         304 VQGLADLFIQMRLPFD-CNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAA  382 (998)
Q Consensus       304 v~GLad~L~~lgl~Y~-S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~  382 (998)
                      ++|||+++..+|++|. |++|.+++.+|++.|+..+.++|.+                                      
T Consensus       265 ~~Gla~~~~~l~~~~~~~~~a~~~~~~i~~~~~~~~~~~s~~--------------------------------------  306 (401)
T cd00576         265 IAGVADLLIKLGLEKVGDPEADDLAAELVDQLKKHLVKATNE--------------------------------------  306 (401)
T ss_pred             HhHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHhhhh--------------------------------------
Confidence            9999999999999999 9999999999999999999988854                                      


Q ss_pred             HHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcC
Q psy1689         383 LKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNN  462 (998)
Q Consensus       383 Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~  462 (998)
                               .||+.+++++|++|+|.+.+.|+||+|.++++|.                                     
T Consensus       307 ---------~~~~~~~~~~P~~s~~~~~~~s~gi~p~~~~~~~-------------------------------------  340 (401)
T cd00576         307 ---------RGFNFLLGLSPSESNSSGAPATNGVSPSRGXIAI-------------------------------------  340 (401)
T ss_pred             ---------cCCccccceeecccccCCCCCCCCcCCccccccc-------------------------------------
Confidence                     4688899999999999999999999999999887                                     


Q ss_pred             CcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCC-C-HHHHHHHHHHHHHcCCceEEEE
Q psy1689         463 GSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEI-N-YAKMSSMHFHGWKLGLKTGMYY  537 (998)
Q Consensus       463 Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~-t-~~~i~~~~~~Awk~GlKt~~yY  537 (998)
                                       .++.+++|.++|++++.+|+|+||++|+|+++++. . .++|.+++..||+.|+|++++|
T Consensus       341 -----------------~~~~~~~~~~~i~~~a~~~~~~~~g~s~~i~~~~~~~~~~~l~~l~~~~~~~g~~~i~~n  400 (401)
T cd00576         341 -----------------VLNGDIGPEESLASVAILQFYADNGISDTITIPDSATNLDQLLAVIDGAAAIKTTHVRVN  400 (401)
T ss_pred             -----------------cccccCCHHHHHHHhhcCcccccCCeeeeeecCCccccHHHHHHHHHHHHHcCCCeEEec
Confidence                             22447899999999999999999999999999864 4 8999999999999999998776

Ribonucleotide reductase (RNR) and pyruvate formate lyase (PFL) are believed to have diverged from a common ancestor. They have a structurally similar ten-stranded alpha-beta barrel domain that hosts the active site, and are radical enzymes. RNRs are found in all organisms and provide the only mechanism by which nucleotides are converted to deoxynucleotides. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs use a diiron-tyrosyl radical while Class II RNRs use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. PFL, an essential enzyme in anaerobic bacteria, catalyzes the conversion of pyruvate and CoA to acteylCoA and formate in a mechanism that uses a glycyl radical.

>cd01676 RNR_II_monomer Class II ribonucleotide reductase, monomeric form

Probab=100.00  E-value=5.6e-35  Score=350.47  Aligned_cols=151  Identities=13%  Similarity=0.034  Sum_probs=131.1

Q ss_pred             cccceecCCCCcchhhhcCCCccccccccceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCC
Q psy1689         797 RNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIP  876 (998)
Q Consensus       797 RNs~~~aiAPTgSiS~i~g~s~giEP~~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~  876 (998)
                      ||+++||||||||||+|+|||+||||+||++|+|+++.+    .|+++.+.|++.|++.++..    ..  +.+.+..+|
T Consensus       466 rn~~lTTIAPTGTiSliaG~SsGIEP~fA~~y~Rrv~~~----~~~pl~~~l~~~G~~~~~~~----~~--~~~~l~~iP  535 (658)
T cd01676         466 LSIKVTCVKPSGTISLLAGASPGMHYPLGKYLIRRIRFQ----KHDPLAPALIAAGYHVEPDI----YD--PTSVLVEFP  535 (658)
T ss_pred             cccceEEECCCchHHHhcCCCCCcChhHhHHHHhhhhcc----cCcHHHHHHHHcCCCcHHHH----hc--cCCCcccCC
Confidence            456699999999999999999999999999999999854    58888999999999976532    22  335788999


Q ss_pred             hhhHhhhcccCCCChHhHHHHHHHhCC-cccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCc-cc--cch
Q psy1689         877 QKLKDLYKTVWEIPQKTVLDMAADRGA-FIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKP-AA--NAI  951 (998)
Q Consensus       877 ~~~k~~f~tA~ei~~~~~I~m~a~~Q~-~iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~-~~--~~~  951 (998)
                      ++.+.+|+||+||+|.+||+|||++|+ ||||+||+|||+| +++.+||.++|.++| .||||+|+|+|.+. .+  |+.
T Consensus       536 ~~~~~~f~Ta~dIs~~~hl~~qA~~Q~y~vD~avSkTIn~p~~~~~~dV~~~l~~~~-~~~KG~t~l~~~d~~~~~~q~P  614 (658)
T cd01676         536 VKAGNADRTANTVSIVEQLSLLAFLQTYWADNQVSNTISFDPSPEGPALIQALQQFQ-YQYKSVSLLPRFDTTKNAAQMP  614 (658)
T ss_pred             HHHHhhcCCHHhCCHHHHHHHHHHhCcCCeeecccceEeeCCCCCHHHHHHHHHHhh-cCCeEEEEeecCCcccCcccCC
Confidence            999999999999999999999999999 6999999999998 779999999999995 49999999986643 33  666


Q ss_pred             hhhhhhh
Q psy1689         952 QFTIDKT  958 (998)
Q Consensus       952 ~~~~~~~  958 (998)
                      ...+++.
T Consensus       615 ~E~I~ke  621 (658)
T cd01676         615 FEPITKE  621 (658)
T ss_pred             ccccCHH
Confidence            6777753

Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Man

>TIGR02505 RTPR ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent

Probab=99.90  E-value=3.2e-24  Score=258.48  Aligned_cols=133  Identities=14%  Similarity=0.081  Sum_probs=98.6

Q ss_pred             cccceecCCCCcchhhhcCCCccccccccceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCcccc----C
Q psy1689         797 RNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQD----I  872 (998)
Q Consensus       797 RNs~~~aiAPTgSiS~i~g~s~giEP~~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~----i  872 (998)
                      ||+++|+||||||+|+|+|||+||||+||++|+|++.    ..+|++|.+.|++.|+..+....+ ...+|....    +
T Consensus       497 r~~~~TTIaPTGTiS~laG~S~GIeP~~A~~y~Rri~----~~~ndpl~~~l~~~Gy~~~p~~~~-~~~~~~~~~~~~~~  571 (713)
T TIGR02505       497 EPIKHTTVKPSGTISKLAGASEGIHPPYGAYLIRRIT----FSKSDPLAPALKACGYTVEADQYD-KNEQGRLPPCKTTL  571 (713)
T ss_pred             CccceeeeCCccchHHhcCCCCccCcchhhheeeeee----eecCcHHHHHHHHcCCCCCccccc-ccccccccccccee
Confidence            3445889999999999999999999999999999994    359999999999999987522111 000010000    1


Q ss_pred             CCCChhh--H--hhhcccC--CCChHhHHHHHHHhCC-cccccccceeecCCCCHHHHHHHHHHHHHcC
Q psy1689         873 EGIPQKL--K--DLYKTVW--EIPQKTVLDMAADRGA-FIDQSQSLNIYMAEINYAKMSSMHFHGWKLG  934 (998)
Q Consensus       873 ~~l~~~~--k--~~f~tA~--ei~~~~~I~m~a~~Q~-~iDqsiS~tl~~~~~~~~~i~~~y~~Aw~~G  934 (998)
                      -.+|.+.  .  .-..+|.  ||++.+|++|||.+|+ |+|+++|+|||+|.-..++|..++.++|+.-
T Consensus       572 ve~p~~~~~~~~~~~~~a~~~diS~~~ql~~qa~~Q~~~~DnavS~Tin~~~~e~e~v~~~~~~~~~~~  640 (713)
T TIGR02505       572 VEFPIKAVGADNPNIAEVGINTVSAAAQFAFYAFLQTYWSDNNVSCTITFDPSEGEQVESALRQYRDNS  640 (713)
T ss_pred             EEeeecccccCCCCCcccccccCCHHHHHHHHHHHhHhhhhccCceeEecChHHHHHHHHHHHHHHHhh
Confidence            0112110  0  1122555  9999999999999999 8999999999998334999999999999843

This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (RNR) related to the characterized species from Lactococcus leichmannii. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Thus model identifies NrdJ enzymes only in cyanobacteria, lactococcus and certain bacteriophage. A separate model (TIGR02504) identifies a larger group of divergent B12-dependent RNR's.

>cd00576 RNR_PFL Ribonucleotide reductase and Pyruvate formate lyase

Probab=99.67  E-value=1.8e-16  Score=183.27  Aligned_cols=90  Identities=12%  Similarity=0.022  Sum_probs=81.2

Q ss_pred             ccceecCCCCcchhhhcCCCccccccccceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCCh
Q psy1689         798 NSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQ  877 (998)
Q Consensus       798 Ns~~~aiAPTgSiS~i~g~s~giEP~~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~  877 (998)
                      |+++++++||+|+|.+.++|+||+|.++++|.                                                
T Consensus       309 ~~~~~~~~P~~s~~~~~~~s~gi~p~~~~~~~------------------------------------------------  340 (401)
T cd00576         309 FNFLLGLSPSESNSSGAPATNGVSPSRGXIAI------------------------------------------------  340 (401)
T ss_pred             CccccceeecccccCCCCCCCCcCCccccccc------------------------------------------------
Confidence            34478899999999999999999999999987                                                


Q ss_pred             hhHhhhcccCCCChHhHHHHHHHhCCcccccccceeecC-CCC-HHHHHHHHHHHHHcCCcEEEEE
Q psy1689         878 KLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMA-EIN-YAKMSSMHFHGWKLGLKTGMYY  941 (998)
Q Consensus       878 ~~k~~f~tA~ei~~~~~I~m~a~~Q~~iDqsiS~tl~~~-~~~-~~~i~~~y~~Aw~~GlK~~~yY  941 (998)
                            +|+.+++|.++|+++|.+|+|+|||+|+|++++ +.+ .++|.++|..||+.|+|++++|
T Consensus       341 ------~~~~~~~~~~~i~~~a~~~~~~~~g~s~~i~~~~~~~~~~~l~~l~~~~~~~g~~~i~~n  400 (401)
T cd00576         341 ------VLNGDIGPEESLASVAILQFYADNGISDTITIPDSATNLDQLLAVIDGAAAIKTTHVRVN  400 (401)
T ss_pred             ------cccccCCHHHHHHHhhcCcccccCCeeeeeecCCccccHHHHHHHHHHHHHcCCCeEEec
Confidence                  335589999999999999999999999999998 555 9999999999999999998876

Ribonucleotide reductase (RNR) and pyruvate formate lyase (PFL) are believed to have diverged from a common ancestor. They have a structurally similar ten-stranded alpha-beta barrel domain that hosts the active site, and are radical enzymes. RNRs are found in all organisms and provide the only mechanism by which nucleotides are converted to deoxynucleotides. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs use a diiron-tyrosyl radical while Class II RNRs use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. PFL, an essential enzyme in anaerobic bacteria, catalyzes the conversion of pyruvate and CoA to acteylCoA and formate in a mechanism that uses a glycyl radical.

>cd01675 RNR_III Class III ribonucleotide reductase

Probab=97.57  E-value=0.0027  Score=77.28  Aligned_cols=254  Identities=20%  Similarity=0.262  Sum_probs=152.1

Q ss_pred             cHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCccceec-----------ccCCCCcceeeeccccccc
Q psy1689         183 PARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVE-----------YTSKDEVAVCNLASIALNM  251 (998)
Q Consensus       183 ~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~EI~l-----------~~~~~~~~~CNL~SINL~~  251 (998)
                      +-.++++.+++++.++|.|+++|.+..  ...   .|.+.  -=|+-..+           ...+.-+++..+.+|||++
T Consensus       227 ~~~d~~~~~~~~~~k~~~p~f~n~~~~--~~~---~~~~~--~mcCR~~l~~~~~~~~~~~~~~~~~~Gs~~vvTiNLpR  299 (555)
T cd01675         227 PNYDLKELAFECAAKRGYPYFLNFDNS--DNV---PGDVR--AMGCRLFLDKNELKRGGGLEGSGDGTGNIGVVTINLPR  299 (555)
T ss_pred             CchHHHHHHHHHHHHHCCCCccccccc--ccc---CCCcc--cccCccccchhhhcccCCCCccCcccceeeeEEechHH
Confidence            456889999999999999999877652  111   12111  12331110           1122335667777999999


Q ss_pred             ccCCCCCCCC--hhHHHHHHHHHHHHHHHh-------hhcCCCcHHHHHHHH------hhcCCCccccchHHHHHHHc-C
Q psy1689         252 YINPADKTYN--FTKLKDVAKIVTKNLNKI-------IDVNFYPVEEARNSN------MRHRPIGIGVQGLADLFIQM-R  315 (998)
Q Consensus       252 ~v~~~~~~fD--~~~l~~~v~~avr~LD~v-------Id~~~~p~~e~~~~~------~~~R~IGLGv~GLad~L~~l-g  315 (998)
                      ..-+..+..+  |+.|.+.+.++.+.|+.=       +....+|+-..-...      ...-..-||+.||++++..+ |
T Consensus       300 ia~~a~~d~~~F~~~L~~~l~l~~~~l~~r~~~l~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~tiG~iGL~Ea~~~l~g  379 (555)
T cd01675         300 IAYEARGDEEKFFELLDEYLELAKDALEIRRKRLKEALARGLPPLYQEGLGGGKLLFILKRHTLTIGFIGLNEAAEALTG  379 (555)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHcCcccccceecCCCeEEeEEEehHHHHHHHhcC
Confidence            8753211111  446666677776554332       222334443332222      33455679999999988655 4


Q ss_pred             CCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCC
Q psy1689         316 LPFD-CNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVR  393 (998)
Q Consensus       316 l~Y~-S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~-f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~R  393 (998)
                      -..+ +++|.+|+.+|.++|...+.+.+    +|.|- |. .+.               +|....-=.-.+.+-+++|- 
T Consensus       380 ~~~~~~~~~~~f~~~il~~m~~~~~~~~----~e~g~~~~-l~~---------------tPaEs~~~rfa~~D~~~~g~-  438 (555)
T cd01675         380 KGIGESEEAREFGIRILEHIRERADEFK----EETGLLYS-VEA---------------TPAESLAYRFAKKDRKKYGD-  438 (555)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCceE-EEE---------------cccchHHHHHHHHHHHHcCc-
Confidence            4444 99999999999999998887666    44452 11 111               12100000112445556662 


Q ss_pred             cccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCCh
Q psy1689         394 NSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQ  473 (998)
Q Consensus       394 Ns~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~  473 (998)
                                    .+-|.+.  .|++.|.|.                                             +| 
T Consensus       439 --------------i~~g~~d--~~yyTNS~h---------------------------------------------ip-  456 (555)
T cd01675         439 --------------IIPGVTD--KPYYTNSFH---------------------------------------------VP-  456 (555)
T ss_pred             --------------cCCCCCC--CCCCCCCEE---------------------------------------------ee-
Confidence                          0122221  122222221                                             11 


Q ss_pred             hhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC--CCHHHHHHHHHHHHHcCCce
Q psy1689         474 KLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE--INYAKMSSMHFHGWKLGLKT  533 (998)
Q Consensus       474 ~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~--~t~~~i~~~~~~Awk~GlKt  533 (998)
                             ...++++.+.|+..+..|++.+.+...-+++++  .+++.+.++...|.+.|+.-
T Consensus       457 -------v~~~~~~~eki~~e~~f~~~~~GG~i~hv~l~e~~~n~~al~~lv~~a~~~~~~y  511 (555)
T cd01675         457 -------VYEDIDPFEKIDIEAKLHPLTTGGHILHIELGEAKPNPEALEALVKKAAKRGVIY  511 (555)
T ss_pred             -------CCCCCCHHHHHHhhcccccccCCceEEEEECCCCCCCHHHHHHHHHHHHHcCCce
Confidence                   123477888999999999999999999999996  47889999999999987554

Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w

>TIGR02487 NrdD anaerobic ribonucleoside-triphosphate reductase

Probab=97.26  E-value=0.014  Score=71.46  Aligned_cols=250  Identities=18%  Similarity=0.193  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCccceecc--------cCCCCcceeeecccccccccCCCC
Q psy1689         186 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEY--------TSKDEVAVCNLASIALNMYINPAD  257 (998)
Q Consensus       186 ~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~EI~l~--------~~~~~~~~CNL~SINL~~~v~~~~  257 (998)
                      +|++.+++++.++|.|+++|.|+.-..     .|... +-=|+-..+-        ....-+++..+.+|||++.--+..
T Consensus       233 d~~~~a~~~~ak~~~P~f~n~~~~~~~-----~~~~~-~~MgCR~~l~~~~~~~~~~~~~~~Gn~gvvTiNLpRiA~~a~  306 (579)
T TIGR02487       233 DLFELAFECAAKRGYPYFLNLDPEDNV-----KEDVR-YPMGCRTFLSPNENGDGEESYIGRGNIGVTSINLPRIAYKSR  306 (579)
T ss_pred             HHHHHHHHHHHHhCCCCcccchhhhcc-----CCCee-ccCCCcccccceecCCCCccCcccceeeeEEcchHHHHHHhC
Confidence            799999999999999999886543111     11111 1112221110        011223445566999999764311


Q ss_pred             CCCC--hhHHHHHHHHHHHHHHHhhh------cCCCcHHHHHHH-------------HhhcCCCccccchHHHHHH-HcC
Q psy1689         258 KTYN--FTKLKDVAKIVTKNLNKIID------VNFYPVEEARNS-------------NMRHRPIGIGVQGLADLFI-QMR  315 (998)
Q Consensus       258 ~~fD--~~~l~~~v~~avr~LD~vId------~~~~p~~e~~~~-------------~~~~R~IGLGv~GLad~L~-~lg  315 (998)
                      +..+  |+.|.+.+.++...|+.=.+      ...+|.--....             ..+.-.+-||+.||++++. .+|
T Consensus       307 ~d~~~F~~~L~~~l~l~~~~L~~r~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~siG~iGL~Ea~~~l~G  386 (579)
T TIGR02487       307 GDEEEFFEELDEYLEIAKEALEIRREYLKKMLAKDLPPMYSQGGWDGGNLLDESVEEILKSGTNSIGFIGLNEALVALTG  386 (579)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHhccccccccccchHHHHhhcCeeeeehhhHHHHHHHhcC
Confidence            1111  45677777777776643222      123443321100             0233477899999999887 688


Q ss_pred             CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCC
Q psy1689         316 LP-FDCNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVR  393 (998)
Q Consensus       316 l~-Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~-f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~R  393 (998)
                      .. ..|++|.+|+.+|.++|...+.+.+.    |.|. |. .+               .+|....-=.-.+.+-+++|..
T Consensus       387 ~~~~~~~~a~~f~~~Il~~m~~~~~~~~~----e~g~~~~-l~---------------~TPAEs~~~rfa~~D~~~fg~i  446 (579)
T TIGR02487       387 KHLHEEEEARELAIRILEFIRDKADEFKK----ETGLNYS-VY---------------ATPAESLCGRFAKKDREEFGEI  446 (579)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHH----HHCCceE-EE---------------ECCcchHHHHHHHHHHHHcCCC
Confidence            77 47899999999999999988877663    3442 11 11               1121100001123344556631


Q ss_pred             cccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCCh
Q psy1689         394 NSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQ  473 (998)
Q Consensus       394 Ns~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~  473 (998)
                                      .|.+.-  |++.|.|-                                             +| 
T Consensus       447 ----------------~gv~d~--~yYTNS~h---------------------------------------------ip-  462 (579)
T TIGR02487       447 ----------------PGVTDK--PYYTNSFH---------------------------------------------VP-  462 (579)
T ss_pred             ----------------CCCCCC--CcCCCCEe---------------------------------------------eC-
Confidence                            122211  33333221                                             11 


Q ss_pred             hhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC--CCHHHHHHHHHHHHHcCCc
Q psy1689         474 KLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE--INYAKMSSMHFHGWKLGLK  532 (998)
Q Consensus       474 ~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~--~t~~~i~~~~~~Awk~GlK  532 (998)
                             .-.++++.+.|+..+..|++...+...-+++++  .+++.+.++...|.+.|+.
T Consensus       463 -------v~~~~~~~eki~~e~~f~~~~~GG~i~~v~l~e~~~n~eal~~lv~~a~~~~i~  516 (579)
T TIGR02487       463 -------VYEDVNLGEKIDIEAPFHPLTNGGHITYIELDEAIPDPEALKDITKKAMKNGIG  516 (579)
T ss_pred             -------CCCCCCHHHHHHhhcchhcccCCceEEEEEcCCCCCCHHHHHHHHHHHHhcCCc
Confidence                   123578889999999999999999999999985  4788999999999998743

This model represents the oxygen-sensitive (anaerobic, class III) ribonucleotide reductase. The mechanism of the enzyme involves a glycine-centered radical, a C-terminal zinc binding site, and a set of conserved active site cysteines and asparagines. This enzyme requires an activating component, NrdG, a radical-SAM domain containing enzyme (TIGR02491). Together the two form an alpha-2/beta-2 heterodimer.

>PRK10977 hypothetical protein; Provisional

Probab=97.26  E-value=0.0075  Score=72.31  Aligned_cols=257  Identities=14%  Similarity=0.156  Sum_probs=155.8

Q ss_pred             eeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCC-CCCCCceeecCCccceecccCCCCcceee--ecccccccccCCC
Q psy1689         180 RQVPARKLWFAILDSQIETGTPYMLYKDACNRKSN-QQNLGTIKCSNLCTEIVEYTSKDEVAVCN--LASIALNMYINPA  256 (998)
Q Consensus       180 k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~-~~~~g~I~~sNpC~EI~l~~~~~~~~~CN--L~SINL~~~v~~~  256 (998)
                      ..++..+++++.++++..+|.|.++|.+. +.... ....|.+    =|.|-+ +     .+.||  +.+|||++.-...
T Consensus       187 ~~~tp~d~l~~A~e~~~~~g~P~f~Nd~~-~i~~~~a~~ygi~----gC~~~l-~-----~g~GsigvVTINLpRIA~~a  255 (509)
T PRK10977        187 PEITPDDLLLLAAKNICECSKPHIANHPV-HDKDFTKGGYGIV----SCYNSL-P-----LGGGAYTLVRLNLKEVAKRA  255 (509)
T ss_pred             CCCCCHHHHHHHHHHHhccCCCceecCHh-HHHhhcccCCcee----eeeccC-C-----CCcCCceeEEeeHHHHHHHC
Confidence            34456999999999999999999988553 32222 1234433    366543 2     23455  4599999875431


Q ss_pred             CC--CCChhHHHHHHHHHHHHHHH----hhhc-CCCcHHHHHH-HH-hhcCCC-ccccchHHHHHHHc----CCC--CC-
Q psy1689         257 DK--TYNFTKLKDVAKIVTKNLNK----IIDV-NFYPVEEARN-SN-MRHRPI-GIGVQGLADLFIQM----RLP--FD-  319 (998)
Q Consensus       257 ~~--~fD~~~l~~~v~~avr~LD~----vId~-~~~p~~e~~~-~~-~~~R~I-GLGv~GLad~L~~l----gl~--Y~-  319 (998)
                      ..  .|=.+.|.+.+.++...|+.    +.+. +.||++-..+ .. ...|-. -+|+.|||.++..+    |..  |+ 
T Consensus       256 ~~~e~F~~~~L~~~~~l~~e~l~~R~~~l~e~~~~~~~~fL~~eg~~~~d~f~~tiGiiGLaEav~~l~g~~g~~~~~g~  335 (509)
T PRK10977        256 ESVDDFFDNVLPHYCQQMIEIIDARIRFLVEESNFFESSFLVKEGLIDPERFTPMFGIYGLAEAVNLLLEKEGLAARYGK  335 (509)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHhhcCCccccccccCccHhHHHHHHHHHhcCCCcccCcCC
Confidence            11  12122566677777777655    3332 3466332111 10 122222 59999999988877    343  43 


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCccccc
Q psy1689         320 CNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLI  398 (998)
Q Consensus       320 S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~-f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~lt  398 (998)
                      |++|.+|..+|.++|...+.        +.|. | .+.      |.|                 ++  ..+.|+      
T Consensus       336 seea~~l~~~Il~~m~~~~~--------e~~~~Y-g~~------~Rf-----------------~~--~~q~G~------  375 (509)
T PRK10977        336 DEAANELGYRISAQLAEIVE--------NTPVKY-GWG------GRA-----------------LL--HAQSGI------  375 (509)
T ss_pred             CHHHHHHHHHHHHHHHHHHH--------HhCCcc-Chh------hHH-----------------HH--HHHhCC------
Confidence            78999999999999984433        4442 1 000      000                 00  000000      


Q ss_pred             ccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhh
Q psy1689         399 APMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDL  478 (998)
Q Consensus       399 aiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~  478 (998)
                         ++    - -+.|+|+                                                     .+|      
T Consensus       376 ---~~----d-~~yTns~-----------------------------------------------------hiP------  388 (509)
T PRK10977        376 ---SS----D-KGVTPGV-----------------------------------------------------RIP------  388 (509)
T ss_pred             ---CC----C-CCccCCe-----------------------------------------------------Eec------
Confidence               00    0 0111111                                                     011      


Q ss_pred             cccccCCChHHHHHHHHHhCCccccccceeEeec-C--CCHHHHHHHHHHHHHcCCceEEEEeeccccccccchhhhHhH
Q psy1689         479 YKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMA-E--INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK  555 (998)
Q Consensus       479 f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~-~--~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~~~~~~~~~  555 (998)
                        ...++++.++|+..+..|+|...+++.-+++. .  .+++-+.++-..|.+.|+.=.+++.-++.....-.+-|.++.
T Consensus       389 --V~~e~d~~eki~~ea~~h~~~tGG~i~i~~ld~~~~~NpeAl~~lvk~a~~~gi~Yfsin~~~~d~vrvtgy~~~~s~  466 (509)
T PRK10977        389 --YGDEPDPITHLQTSAPHHKYYPSGISDILTFDETIKRNPQALVDLCKGAFKAGMREFTANVSGNDLVRVTGYMVKLSD  466 (509)
T ss_pred             --CCCCCCHHHHHHhhcccCCccCCceEEEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEccCCceEEEEeEEeeHHH
Confidence              23458889999999999999999998888884 2  478889999899999999888888777766666666665443


Q ss_pred             h
Q psy1689         556 M  556 (998)
Q Consensus       556 ~  556 (998)
                      +
T Consensus       467 ~  467 (509)
T PRK10977        467 I  467 (509)
T ss_pred             H
Confidence            3

>PRK08270 anaerobic ribonucleoside triphosphate reductase; Provisional

Probab=97.01  E-value=0.028  Score=69.62  Aligned_cols=242  Identities=15%  Similarity=0.265  Sum_probs=143.4

Q ss_pred             HHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCccceeccc------------CCCCcceeeecccccccccCC
Q psy1689         188 WFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYT------------SKDEVAVCNLASIALNMYINP  255 (998)
Q Consensus       188 w~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~EI~l~~------------~~~~~~~CNL~SINL~~~v~~  255 (998)
                      ++.+.+++.+.|.|++.+-.+.. +.+    |.+.  -=|+-..+-.            ...-++++.--||||++.--+
T Consensus       345 ~d~~~e~~ak~g~p~f~n~~~~~-~~~----~~~~--~MgCR~~l~~~~~~~~~~g~~g~~~~~GnigvvTiNLPRia~~  417 (656)
T PRK08270        345 ADLLFEMTAKYGLPYFQNFINSD-LKP----EDVR--SMCCRLQLDLRELRKRGGGLFGSAELTGSIGVVTINLPRLGYL  417 (656)
T ss_pred             HHHHHHHHHhhCCcccccccccc-cCC----CCcc--ccCCCCccchhhhhhhcCCcccCCCccceeeeEeccHHHHHHH
Confidence            56778888899999998532211 111    1111  1133221110            111234444559999997543


Q ss_pred             CCCCCC----hhHHHHHHHHHHHHH-------HHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHH-HcCCCCCCHHH
Q psy1689         256 ADKTYN----FTKLKDVAKIVTKNL-------NKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI-QMRLPFDCNES  323 (998)
Q Consensus       256 ~~~~fD----~~~l~~~v~~avr~L-------D~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~-~lgl~Y~S~ea  323 (998)
                      .  . |    |+.|.+.+.++...|       ...+..+.||.-.......+....-||+.||++++. ..|...+++|+
T Consensus       418 a--~-d~~~F~~~L~~~l~la~~~L~~r~~~l~~~~~~~l~p~~~~~l~~~~~~~~TIG~iGl~E~~~~~~G~~~~~~e~  494 (656)
T PRK08270        418 S--K-DEEEFFARLDELMDLAKDSLEIKRKVIERLTDKGLYPYTKRYLGTLRNHFSTIGLNGMNEACLNFLGKDITTEEG  494 (656)
T ss_pred             c--C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHHHhcCCeeeeehhhHHHHHHHHhCCCCCCHHH
Confidence            1  2 4    455666666665544       334454667754432222333444689999999886 78888889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccCC
Q psy1689         324 RLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMP  402 (998)
Q Consensus       324 ~~l~~~I~e~i~~~A~~aS~eLAke~G~-f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaP  402 (998)
                      .+|+.+|+++|...+-+.+    +|.|- |. .+               .+|....--.-.+.|-++||..-        
T Consensus       495 ~~f~~~vl~~m~~~~~~~~----~e~g~~~~-l~---------------~TPAEs~~~rfak~D~~~fg~i~--------  546 (656)
T PRK08270        495 RAFALRVLDHMRERLVEFQ----EETGNLYN-LE---------------ATPAEGTTYRLAKEDKKRYPDII--------  546 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHCCceE-EE---------------ECccchHHHHHHHHHHHHcCCcc--------
Confidence            9999999999998887666    44553 21 11               12321111122344556676311        


Q ss_pred             ccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhcccc
Q psy1689         403 TASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV  482 (998)
Q Consensus       403 Tgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA  482 (998)
                            +.|.+.  .|+|.|.|-                                             +|        ..
T Consensus       547 ------~~g~~d--~~YYTNS~h---------------------------------------------~~--------v~  565 (656)
T PRK08270        547 ------TAGTDE--EPYYTNSTQ---------------------------------------------LP--------VG  565 (656)
T ss_pred             ------cCCCCC--CCcccCCcc---------------------------------------------cC--------CC
Confidence                  123221  144333221                                             11        13


Q ss_pred             cCCChHHHHHHHHHhCCccccccceeEeecCC--CHHHHHHHHHHHHH
Q psy1689         483 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAEI--NYAKMSSMHFHGWK  528 (998)
Q Consensus       483 ~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~--t~~~i~~~~~~Awk  528 (998)
                      .++++.+.|++.+..|++.+-+--.-+++++.  +.+-+.++..++.+
T Consensus       566 ~~~~~feki~~e~~~~~~~~GG~I~hv~l~e~~~n~~a~~~lv~~~~~  613 (656)
T PRK08270        566 YTDDPFEALELQDELQTKYTGGTVFHLYLGEAISDAEACKKLVKKALE  613 (656)
T ss_pred             CCCCHHHHHhhhccCcceecceEEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            45788889999999999999998889999863  67888888777765

>PRK07111 anaerobic ribonucleoside triphosphate reductase; Provisional

Probab=96.80  E-value=0.043  Score=68.94  Aligned_cols=261  Identities=16%  Similarity=0.181  Sum_probs=149.1

Q ss_pred             cHHHHHHHHHHHHHhhCCceeEehhhh-hhh--CCCCCCCceeecCCccceecccC----CCC--cceeeeccccccccc
Q psy1689         183 PARKLWFAILDSQIETGTPYMLYKDAC-NRK--SNQQNLGTIKCSNLCTEIVEYTS----KDE--VAVCNLASIALNMYI  253 (998)
Q Consensus       183 ~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~-Nr~--~~~~~~g~I~~sNpC~EI~l~~~----~~~--~~~CNL~SINL~~~v  253 (998)
                      +-.+||+..+++..+.+-|+++|.|.. |..  .+-.....|.  -=|+-..+...    ...  +++-.+.+|||++.-
T Consensus       378 p~~~l~~la~~~~~kr~~p~f~~~~~~~~~~~~~~g~~~~~v~--~MgCR~~l~~~~~G~~~~~g~Gn~gvVTINLpRiA  455 (735)
T PRK07111        378 PNYDLFKLACRVAAKRLFPNFSFLDAPFNKEYYDKGRPPTEVA--TMGCRTRVMSNVNGEEGTKGRGNLSFTTINLPRLA  455 (735)
T ss_pred             chHHHHHHHHHHhcCcCCCceeecccccchhccCCCCcCcCcc--cCCCcceecccCCCcccccCccceeEEEecHHHHH
Confidence            368899999999999999999999854 221  1110000000  11222111110    011  233445699999875


Q ss_pred             CCCCCCCC--hhHHHHHHHHHHHHHHH---hh---hcCCCcHHHH--HH-HH------------hhcCCCccccchHHHH
Q psy1689         254 NPADKTYN--FTKLKDVAKIVTKNLNK---II---DVNFYPVEEA--RN-SN------------MRHRPIGIGVQGLADL  310 (998)
Q Consensus       254 ~~~~~~fD--~~~l~~~v~~avr~LD~---vI---d~~~~p~~e~--~~-~~------------~~~R~IGLGv~GLad~  310 (998)
                      -...+..|  |+.|.+.+.++...|+.   ++   ....+|.-..  .. ..            -++-.+.||+.||+.+
T Consensus       456 ~~a~~d~~~F~~~L~~~l~la~~~L~~R~~~l~~~~~~~~P~~~~~g~~l~~~~l~~~~~~~~~~~~~t~tiG~iGL~Ea  535 (735)
T PRK07111        456 IEAKKDIDKFFELLDERLELAIEQLLHRYEVQKTLKVKDFPFLMGQGLWKGSENLGPDDSIEPVLKQGTLGIGFIGLAET  535 (735)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchHhhcccccccccCCCccchhHHhhcCceeeeHHHHHHH
Confidence            42111111  45667777777666632   12   2234554321  00 00            1223567999999998


Q ss_pred             HHH-cCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHH
Q psy1689         311 FIQ-MRLPF-DCNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI  387 (998)
Q Consensus       311 L~~-lgl~Y-~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~-f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i  387 (998)
                      +.. .|..+ .+++|.+|+.+|.++|...+-+.+.+    .|- |. ..               .+|....--.-.+.|-
T Consensus       536 ~~~l~G~~~~~~~ea~~fa~~Il~~m~~~~~~~~~e----~G~~~~-l~---------------~tPAEs~~~rfa~~D~  595 (735)
T PRK07111        536 LVALTGKHHGESEEAQELGLKIVSHMRDFCDEYKEE----YKLNYS-LL---------------ATPAEGLSGRFIKMDR  595 (735)
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hCCCce-EE---------------EcccchhHHHHHHHHH
Confidence            865 67776 79999999999999998887766533    342 11 10               1121100001124455


Q ss_pred             HhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccc
Q psy1689         388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQD  467 (998)
Q Consensus       388 ~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~  467 (998)
                      ++||+                +.|++.  .|+|.|.|.                                          
T Consensus       596 ~~fg~----------------i~g~~d--~~yYTNS~h------------------------------------------  615 (735)
T PRK07111        596 KKFGE----------------IKGVTD--KEYYTNSFH------------------------------------------  615 (735)
T ss_pred             HhcCC----------------CCCCCC--CCcccccee------------------------------------------
Confidence            56663                013221  134443332                                          


Q ss_pred             cCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC---CCHHHHHHHHHHHHHcCCceEEE
Q psy1689         468 IEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE---INYAKMSSMHFHGWKLGLKTGMY  536 (998)
Q Consensus       468 ~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~---~t~~~i~~~~~~Awk~GlKt~~y  536 (998)
                         +|        ...++++.+.|+..+..|++...+...-+++++   .+++-+.++-..|.+.|+.=.++
T Consensus       616 ---lp--------v~~~~~~~eki~~e~~~~~~~~GG~i~~v~l~~e~~~n~eal~~lvk~~~~~~i~Y~si  676 (735)
T PRK07111        616 ---VP--------VYYPISIFEKIEIEAPYHKLTNGGHISYVELDGDPSKNVEAFEIIVKAMKNTNIGYGSI  676 (735)
T ss_pred             ---ec--------CCCCCCHHHHHHhhcccccccCCeEEEEEEeCCccCCCHHHHHHHHHHHHhCCCceEEe
Confidence               11        123478889999999999999999999999984   36777777777777766554333

>PRK09263 anaerobic ribonucleoside triphosphate reductase; Provisional

Probab=96.73  E-value=0.061  Score=67.32  Aligned_cols=249  Identities=13%  Similarity=0.086  Sum_probs=146.2

Q ss_pred             HHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCccceec--cc----CCCCcceeeec--ccccccccCC
Q psy1689         184 ARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVE--YT----SKDEVAVCNLA--SIALNMYINP  255 (998)
Q Consensus       184 Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~EI~l--~~----~~~~~~~CNL~--SINL~~~v~~  255 (998)
                      -.+||+..+++..+.+.|.++|.|.+-+.     .|.+.++ -|+--.+  ..    ....++.+||+  ||||++.--.
T Consensus       347 ~~~l~~~a~~~~~k~~~p~f~~~~~~~~~-----~g~~~~~-MgCR~~l~~~~~~~g~~~~~Gr~nigvvTiNLPRia~~  420 (711)
T PRK09263        347 NYDIKQLALECATKRMYPDILNYDKIVEL-----TGSFKTP-MGCRSFLQGWKDENGEEVHDGRNNLGVVTLNLPRIALE  420 (711)
T ss_pred             hHHHHHHHHHHhccccCCceecccchhhc-----CCCeeeC-CCCCCcCcchhccCCCccccccceeeEEeccHHHHHHH
Confidence            56889999999999999999998854221     1222211 1222110  00    01124567776  9999987542


Q ss_pred             CCCCCC--hhHHHHHHHHHHHHHHHh------hhcCCCcHHHHH--------------HHHhhc-CCCccccchHHHHHH
Q psy1689         256 ADKTYN--FTKLKDVAKIVTKNLNKI------IDVNFYPVEEAR--------------NSNMRH-RPIGIGVQGLADLFI  312 (998)
Q Consensus       256 ~~~~fD--~~~l~~~v~~avr~LD~v------Id~~~~p~~e~~--------------~~~~~~-R~IGLGv~GLad~L~  312 (998)
                      ..+..+  |+.|.+.+.++...|..=      .....+|+--..              ...+.. =++-||+.||++++.
T Consensus       421 ~~~d~~~F~~~Ld~~l~la~~~L~~r~~~~~~~~~~~~P~l~~~g~~~~~l~~~~~~~~~~~~~~~T~siG~iGl~E~~~  500 (711)
T PRK09263        421 AKGDEDKFWEILDERLELAKKALMTRIERLKGAKPRVAPILYMYGAFGVRLKADDDVDELFKNGRATISLGYIGLYETIN  500 (711)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHhccccccCCCCcchHHHhcCCCceEeeeHhHHHHHHH
Confidence            111111  456777777776665322      122456643211              011111 145799999999986


Q ss_pred             -HcCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhc
Q psy1689         313 -QMRLPFD-CNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH  390 (998)
Q Consensus       313 -~lgl~Y~-S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~  390 (998)
                       ..|-... ++++.+|+.+|+++|...+-+.+    +|.|--=...               .+|....--.-.+.|-+++
T Consensus       501 ~~~G~~~~e~~e~~~fa~~vl~~m~~~~~~~~----~e~g~~~~l~---------------~TPAEs~~~rfak~D~~~f  561 (711)
T PRK09263        501 ALYGGSWEVNPEAKAFALAIVKRMKDACDQWK----KETGYGFSLY---------------STPSESLTDRFCRLDTEKF  561 (711)
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCceEEE---------------ECCcchHHHHHHHHHHHHc
Confidence             7788776 99999999999999988877665    5556311111               1232111112334556677


Q ss_pred             CCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCC
Q psy1689         391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEG  470 (998)
Q Consensus       391 G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~  470 (998)
                      |+                +-|.|.  .|+|.|.|.                                             
T Consensus       562 g~----------------i~g~~d--~~YYTNS~h---------------------------------------------  578 (711)
T PRK09263        562 GV----------------IPGITD--KGYYTNSFH---------------------------------------------  578 (711)
T ss_pred             CC----------------CCCCCC--CCccCCCEe---------------------------------------------
Confidence            73                123322  244444332                                             


Q ss_pred             CChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC--CCHHHHHHHHHHHHH
Q psy1689         471 IPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE--INYAKMSSMHFHGWK  528 (998)
Q Consensus       471 lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~--~t~~~i~~~~~~Awk  528 (998)
                      +|        .-.++++.+-|+..+..|++..-+--.-+.+++  .+.+.+.++..++.+
T Consensus       579 ~p--------v~~~i~~~eki~~e~~~~~~~~GG~I~yve~~~~~~n~~a~~~lv~~~~~  630 (711)
T PRK09263        579 YD--------VRKKVNPFEKLDFEKPYPPLASGGFIHYCEYPNLQHNLKALEAVWDYSYD  630 (711)
T ss_pred             cC--------CCCCCCHHHHHHhhcccccccCCeEEEEEecCCCcCCHHHHHHHHHHHHH
Confidence            11        123377888899999999988887555566664  467778888778877

>PRK14704 anaerobic ribonucleoside triphosphate reductase; Provisional

Probab=96.62  E-value=0.084  Score=65.06  Aligned_cols=254  Identities=17%  Similarity=0.178  Sum_probs=150.0

Q ss_pred             cHHHHHHHHHHHHHhhCCceeEehhhh-h--hh--CCCCCCCceeecCCccceecccC----CCCcceee--eccccccc
Q psy1689         183 PARKLWFAILDSQIETGTPYMLYKDAC-N--RK--SNQQNLGTIKCSNLCTEIVEYTS----KDEVAVCN--LASIALNM  251 (998)
Q Consensus       183 ~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~-N--r~--~~~~~~g~I~~sNpC~EI~l~~~----~~~~~~CN--L~SINL~~  251 (998)
                      +-.+||+..+++..+.+.|.++|.|.. |  .+  .+.   ..+.  -=|+-..+...    ....+.+|  +.+|||++
T Consensus       259 p~~~l~~la~~~~~kr~~p~f~~~~~~~n~~~~~g~~~---~~~~--~MgCR~~l~~~~~G~~~~~g~GnigvVTINLPR  333 (618)
T PRK14704        259 PNYDLFELALETTAERLFPNFSFLDAPFNAVHYDGRPE---SEVC--YMGCRTRVMSNIHGEETAIGRGNLSFTSINLVK  333 (618)
T ss_pred             chHHHHHHHHHHhcCcCCcceeccccccchhhhcCCCC---cccc--cCcccceeccccCCCcCCCccceeeeEEeeHHH
Confidence            468899999999999999999999853 2  21  110   0110  11222111110    01123445  45999998


Q ss_pred             ccCCCCCCCC----hhHHHHHHHHHHHHHHHhhh------cCCCcHHHHHHH---H------------hhcCCCccccch
Q psy1689         252 YINPADKTYN----FTKLKDVAKIVTKNLNKIID------VNFYPVEEARNS---N------------MRHRPIGIGVQG  306 (998)
Q Consensus       252 ~v~~~~~~fD----~~~l~~~v~~avr~LD~vId------~~~~p~~e~~~~---~------------~~~R~IGLGv~G  306 (998)
                      .--.. +  |    |+.|.+.+.++.+.|+.=++      ...+|.--..-.   .            .++-++-||+.|
T Consensus       334 IA~~a-~--d~e~F~~~L~~~l~l~~~~L~~R~~~l~~~~~~~~P~l~~~g~~~~~~~l~~~~~~~~~~~~~t~siG~iG  410 (618)
T PRK14704        334 LALIS-G--SKEAFFEALNYYLDLGIKQLLERFEYQCTKRARDFRFLYSQGVWRGGEKLQPEDSVASILKQGTLSLGFIG  410 (618)
T ss_pred             HHHHC-C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHCcccccccccCCCcchhhhcccceeeeeHHH
Confidence            75432 1  3    44566777777666644222      222343211100   0            011235689999


Q ss_pred             HHHHHH-HcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHH
Q psy1689         307 LADLFI-QMRLPF-DCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALK  384 (998)
Q Consensus       307 Lad~L~-~lgl~Y-~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr  384 (998)
                      |++++. ..|..+ .|++|.+|+.+|+++|...+-+.+    +|.|.-=..++               +|....--.-++
T Consensus       411 L~Ea~~~l~G~~~~~~~ea~~fa~~Il~~m~~~~~~~~----~e~g~~~nl~~---------------TPAEs~~~Rfa~  471 (618)
T PRK14704        411 LAECLVALTGKHHGEDEESWKLGYEIISFMRDRMDKAT----EEHELNFSVIA---------------TPAEGLSGKFVK  471 (618)
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCCceeee---------------cccccHHHHHHH
Confidence            999775 556666 789999999999999998877666    44553111111               222111112344


Q ss_pred             HHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCc
Q psy1689         385 EKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGS  464 (998)
Q Consensus       385 ~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gs  464 (998)
                      .+-+++|+                +-|++.  .|+|.|.|.                                       
T Consensus       472 ~D~~~fg~----------------i~gv~d--~~YYTNS~h---------------------------------------  494 (618)
T PRK14704        472 KDREEFGV----------------ISGITN--HNYYTNSFH---------------------------------------  494 (618)
T ss_pred             HHHHhCCC----------------cCCCCC--CCcccCcee---------------------------------------
Confidence            45566653                124432  466655442                                       


Q ss_pred             ccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeec-C--CCHHHHHHHHHHHHHcCCceE
Q psy1689         465 IQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMA-E--INYAKMSSMHFHGWKLGLKTG  534 (998)
Q Consensus       465 v~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~-~--~t~~~i~~~~~~Awk~GlKt~  534 (998)
                            +|        .-.++++.+.|+..+..|++...+...-++++ +  .+++-+.++-..|.+.|+.=.
T Consensus       495 ------ip--------V~~~~~~~eki~~e~~fh~~~~GG~I~hv~l~~~~~~n~~Al~~lvk~~~~~~i~Y~  553 (618)
T PRK14704        495 ------IP--------VYYNIQAINKIRLEGPFHALCNGGHITYIELDGAAMHNKKALKQIVQAMAEHGVGYG  553 (618)
T ss_pred             ------cc--------CCCCCCHHHHHHhhcccccccCCeEEEEEEECCccCCCHHHHHHHHHHHHhcCCceE
Confidence                  11        12347888999999999999999999999995 4  477888888777777655443

>PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional

Probab=96.03  E-value=0.1  Score=64.19  Aligned_cols=195  Identities=16%  Similarity=0.199  Sum_probs=125.5

Q ss_pred             CcceeeecccccccccCCCCC--CCChhHHHHHHHHHHHH-------HHHhhhcCCCcHHHHHHHHhhcCCCccccchHH
Q psy1689         238 EVAVCNLASIALNMYINPADK--TYNFTKLKDVAKIVTKN-------LNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLA  308 (998)
Q Consensus       238 ~~~~CNL~SINL~~~v~~~~~--~fD~~~l~~~v~~avr~-------LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLa  308 (998)
                      .+++++.-||||++..-..++  .| |+.|.+.+.++.+.       |...+..+.+|+-...-...+.--+-||+.||+
T Consensus       347 ~tGSigVVTINLPRia~~a~~~~~F-~e~Ld~~lela~~~l~~~R~~l~~~~~~~~~P~~~~~~~~l~~~f~TIGiiGl~  425 (623)
T PRK08271        347 NTGSINVITINLPRIAQEARDRDDF-LEILRERVDKIHKYQLAYREIMEERIAAGMLPLYDAGFISLDKQFLTIGINGMV  425 (623)
T ss_pred             ccCCcceEEccHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhcccccceEeeeHhhHH
Confidence            467788889999997643211  11 56667766666553       455566677886553322233444789999999


Q ss_pred             HHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCcCccCcccccccCCCCCCHhhHHHHHHH
Q psy1689         309 DLFIQMRLP-FDCNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK  386 (998)
Q Consensus       309 d~L~~lgl~-Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~-f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~  386 (998)
                      .++..+|.. .+++++.+|+.+|.++|...+.+.+    +|.|- |. .+               .+|....--.-.+.|
T Consensus       426 Ea~~~~G~~~~~~~e~~~f~~~il~~mr~~~~~~~----~etG~~fn-le---------------~TPAEsls~RfAk~D  485 (623)
T PRK08271        426 EAAEFMGLTVGYNEEYKDFVQEVLKVIYEANEKAS----KEYGFTFN-TE---------------FVPAENLGVKLAKWD  485 (623)
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCceE-EE---------------ECCcchHHHHHHHHH
Confidence            999999988 7899999999999999998887766    44552 21 11               122111111112233


Q ss_pred             HHh-cCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcc
Q psy1689         387 IAK-HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSI  465 (998)
Q Consensus       387 i~~-~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv  465 (998)
                      -++ ||+         +             -.|+.++                                         + 
T Consensus       486 ~~~~fg~---------~-------------~~~Y~s~-----------------------------------------s-  501 (623)
T PRK08271        486 REDGYGV---------P-------------RQCYNSY-----------------------------------------S-  501 (623)
T ss_pred             HHhccCC---------C-------------CCCCccc-----------------------------------------c-
Confidence            344 553         0             0111100                                         0 


Q ss_pred             cccCCCChhhhhhcccccCCChHHHHHHHHH-hCCccccccceeEeecCC-CHHHHHHHHHHHHHc
Q psy1689         466 QDIEGIPQKLKDLYKTVWEIPQKTVLDMAAD-RGAFIDQSQSLNIYMAEI-NYAKMSSMHFHGWKL  529 (998)
Q Consensus       466 ~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~-~Q~~VDqs~S~tl~l~~~-t~~~i~~~~~~Awk~  529 (998)
                       +   +|.        -.++++.+-|++.+. .|++.+-+--.-|++++. +.+.+.++..++.+.
T Consensus       502 -~---~pv--------~~~~~~~eki~~e~~~~~~~~tGG~I~hi~l~e~~n~eal~~lv~~~~~~  555 (623)
T PRK08271        502 -Y---VVE--------DANTDALDKFKLHGKELDKYLSGGSALHLNLDERLSEEGYRKLLNIAAKT  555 (623)
T ss_pred             -c---cCC--------CCCCCHHHHHHhhcccccceecceEEEEEEcCCCCCHHHHHHHHHHHHHc
Confidence             1   111        234788889999999 999999999999999864 778888888888763

>PF13597 NRDD: Anaerobic ribonucleoside-triphosphate reductase; PDB: 1HK8_A 1H78_A 1H7A_A 1H79_A 1H7B_A

Probab=95.88  E-value=0.016  Score=70.47  Aligned_cols=154  Identities=15%  Similarity=0.172  Sum_probs=84.6

Q ss_pred             eecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCccceeccc---------CCCCcceeeec--cccc
Q psy1689         181 QVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYT---------SKDEVAVCNLA--SIAL  249 (998)
Q Consensus       181 ~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~EI~l~~---------~~~~~~~CNL~--SINL  249 (998)
                      .-+-.+||+..+++..+.+.|++.+...-....+.           |+-..+..         .....+.+||+  ||||
T Consensus       222 ~~~~~~l~~~a~k~~~~~~~p~~~~~~~~~~~~~M-----------cCR~~l~~~~~~~~~~~~~~~~~~GnigvVTINL  290 (546)
T PF13597_consen  222 GDPNYDLFELAAKCGAKRFYPDFNSDLDPDDVRSM-----------CCRLRLSLNELGNGGGLFGSGDGTGNIGVVTINL  290 (546)
T ss_dssp             TSTTHHHHHHHHHHHHHHS--EEEEHHHHHH---B-----------TTTB-----B-TTS-B-----TT-BEEEEEEEEH
T ss_pred             CCchHHHHHHHHHHhHHhCCCCeecCCCCcceecc-----------ccccccChhhhccCCcceeccccccceeEEEecH
Confidence            44568999999999999999999766533222111           11111000         00112345655  9999


Q ss_pred             ccccCCCCCCC-ChhHHHHHHHHHHH-HHHHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCC-CCCHHHHHH
Q psy1689         250 NMYINPADKTY-NFTKLKDVAKIVTK-NLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP-FDCNESRLL  326 (998)
Q Consensus       250 ~~~v~~~~~~f-D~~~l~~~v~~avr-~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~-Y~S~ea~~l  326 (998)
                      ++..-+..+.. .|.+|.+. .++.| .+...++.+.+|.-.......+.-..-||+.||++++..+|-. .+++++.+|
T Consensus       291 PRiA~~a~~d~~~f~~L~~~-~~~~r~~i~~~~~~~~~P~~~~~~~~~~~~~~tIG~iGL~Ea~~~~g~~~~~~~~~~~f  369 (546)
T PF13597_consen  291 PRIAYEAKGDEDFFEELDKL-MLAKRKVIKKLLEAGLYPFTKQYLWRLKNHFSTIGIIGLNEALQNFGGKHHESPEGREF  369 (546)
T ss_dssp             HHHHHTTEE-HHHHHHHHHH-HHHHHHHHHHHHHGGG-HHHHTST-SHTTTTSEEEEE-HHHHHHHH---------TS--
T ss_pred             HHHHHHhCCcHHHHHHHHHH-HHHHHHHHHhhccCCcCchhHhhHhhhcCeeEeecHHHHHHHHHHHHHhcccHHHHHHH
Confidence            99764421100 14555433 23333 4666677777886544333345667889999999999988776 478999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC
Q psy1689         327 NKQIFETIYYGALEASCEIAARDG  350 (998)
Q Consensus       327 ~~~I~e~i~~~A~~aS~eLAke~G  350 (998)
                      +.+|.++|...+.+.+    +|.|
T Consensus       370 ~~~Vl~~m~~~~~~~~----~e~g  389 (546)
T PF13597_consen  370 ALKVLEHMRDKADEFQ----EETG  389 (546)
T ss_dssp             HHHHHHHHHHHHHHHH----HHHS
T ss_pred             HHHHHHHHHHHHHHHH----HHHC
Confidence            9999999988877655    5666

>PRK08579 anaerobic ribonucleoside triphosphate reductase; Provisional

Probab=95.74  E-value=0.42  Score=59.11  Aligned_cols=202  Identities=13%  Similarity=0.092  Sum_probs=115.4

Q ss_pred             cceeeecccccccccCCCCCCCC--hhHHHHHHHHHHHHHH-------Hhhhc--CCCcHHHHHHHHh-hcCCCccccch
Q psy1689         239 VAVCNLASIALNMYINPADKTYN--FTKLKDVAKIVTKNLN-------KIIDV--NFYPVEEARNSNM-RHRPIGIGVQG  306 (998)
Q Consensus       239 ~~~CNL~SINL~~~v~~~~~~fD--~~~l~~~v~~avr~LD-------~vId~--~~~p~~e~~~~~~-~~R~IGLGv~G  306 (998)
                      ++++...||||++.--+..+..+  |+.|.+.+.++...|.       ..++.  ..||.-...-... ..-..-||+.|
T Consensus       333 ~GnigVVTINLPRIa~~a~gd~~~F~~~Ld~~lela~~~L~~kr~~~~~~~~~~~~l~P~~~~~l~~~~~~~~~tIG~iG  412 (625)
T PRK08579        333 TGSVNVTTVNLPRIALEARGDDDKFWELYEERLELVRITLDWFRERYVKLLKTYPEMYSMIKEYLEEFPSSHFNTIGIIG  412 (625)
T ss_pred             cCceeeEeccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHhchhhhhCCEEEEEeeh
Confidence            44455559999997542111111  5667777777766665       23333  3455421110111 22347899999


Q ss_pred             HHHHHHH-cCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCH
Q psy1689         307 LADLFIQ-MRLP--------FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL  377 (998)
Q Consensus       307 Lad~L~~-lgl~--------Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~  377 (998)
                      |+.++.. .|..        -++++|.+++.+|.++|...+.+.+    +|.|--=..+               .+|...
T Consensus       413 l~E~~~~~~G~~~~~~~~~~~~~~~~~~~~~~il~~mr~~~~~~~----~etg~~~nle---------------~TPAEs  473 (625)
T PRK08579        413 LPEAAAIYLGEPKLWTEGSRRDWLEAAELMKKMVEFAVEKAREWM----KETGTPWNVE---------------EVPGES  473 (625)
T ss_pred             HHHHHHHHcCCCcccccCChhhhHHHHHHHHHHHHHHHHHHHHHH----HHHCCceEEE---------------Ecccch
Confidence            9998865 6643        3567789999999999988776554    4455311111               122211


Q ss_pred             hhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHH
Q psy1689         378 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQ  457 (998)
Q Consensus       378 ~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~  457 (998)
                      .--.-.+.|-+++|.-        +.       ++..+--|+|.|.|. .                              
T Consensus       474 ~~~Rfak~D~~~fg~i--------~~-------~~~~~~~~yYTNS~~-p------------------------------  507 (625)
T PRK08579        474 AAAKLAIKDLKLFPEL--------RE-------YLSDPENPIYSTSIA-P------------------------------  507 (625)
T ss_pred             HHHHHHHHHHHHcCCC--------cc-------cccCCCCCceeCcee-e------------------------------
Confidence            1112233445566621        10       000011133333221 1                              


Q ss_pred             HhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHH
Q psy1689         458 LIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWK  528 (998)
Q Consensus       458 i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk  528 (998)
                                          +   ..++++.+-|+..+..|++.+-+--.-|++.+ ++.+-+.++..++.+
T Consensus       508 --------------------v---~~~i~~~eki~~e~~~~~~~~GG~i~hi~l~E~pn~~al~~lv~~~~~  556 (625)
T PRK08579        508 --------------------Y---YGPLELWDRIEIEEKVQQEFTGGVMMHIFLGEEPDPEALAKLTKRIMN  556 (625)
T ss_pred             --------------------C---CCCCCHHHHHHhhccccccccCceEEEEEeCCCCCHHHHHHHHHHHHh
Confidence                                0   13477888899999999999999888899985 567788888888855

>TIGR02827 RNR_anaer_Bdell anaerobic ribonucleoside-triphosphate reductase

Probab=93.33  E-value=0.65  Score=56.97  Aligned_cols=108  Identities=14%  Similarity=0.187  Sum_probs=76.9

Q ss_pred             CCcceeeecccccccccCCCCCCCChhHHHHHHHHHHH----HHHHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHH
Q psy1689         237 DEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTK----NLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI  312 (998)
Q Consensus       237 ~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr----~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~  312 (998)
                      .-+|++..-+|||++..-..+   |++++-++++.+..    .|...++.+.+|+-..........-.-||+.||+.++.
T Consensus       319 ~~tGSigVVTINLPRia~~a~---~L~~~l~la~~~L~~kr~~l~~~~~~g~~P~~~~~~~~~~~~f~TIGiiGl~Ea~~  395 (586)
T TIGR02827       319 VATGSINVITINMNRLVQDSR---DLAHEVEKIHKYQVAYRELMKEYLAAGLLPLYDAGFITLDKQFLTIGINGMVEAAE  395 (586)
T ss_pred             CcccccceEEecHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHhhhcccccceEeeeHhhHHHHHH
Confidence            357788888999999764321   34444444432222    35556677778876654444444558899999999999


Q ss_pred             HcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy1689         313 QMRLP-FDCNESRLLNKQIFETIYYGALEASCEIAARDGP  351 (998)
Q Consensus       313 ~lgl~-Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~  351 (998)
                      .+|.. -+++++.+|+.+|+++|...+.+.+    +|.|-
T Consensus       396 ~~G~~~~~~~e~~~fa~~vl~~mr~~~~~~~----~etG~  431 (586)
T TIGR02827       396 FMGLTVGYNEEYKDFVQNVLKVIYEANQKAY----HEYGF  431 (586)
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCC
Confidence            89987 5789999999999999998887766    55663

Members of this family belong to the class III anaerobic ribonucleoside-triphosphate reductases (RNR). These glycine-radical-containing enzymes are oxygen-sensitive and operate under anaerobic conditions. The genes for this family are pair with genes for an acitivating protein that creates a glycine radical. Members of this family, though related, fall outside the scope of TIGR02487, a functionally equivalent protein set; no genome has members in both familes. Identification as RNR is supported by gene pairing with the activating protein, lack of other anaerobic RNR, and presence of an upstream regulatory element strongly conserved upstream of most RNR operons.

>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical

Probab=89.01  E-value=8.6  Score=45.33  Aligned_cols=263  Identities=14%  Similarity=0.146  Sum_probs=162.2

Q ss_pred             ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCC-CCCCceeecCCccceecccCCCCcceeeecccccccccCCC
Q psy1689         178 FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQ-QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPA  256 (998)
Q Consensus       178 ~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~-~~~g~I~~sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~  256 (998)
                      +-..+...++...-++++.+|+.|-+.+.- +.+.... ...|.+.    |--.+ |.   --++..|.-+||.+....-
T Consensus       171 Yd~~~Tpdd~~~~A~~~~l~csKP~faN~~-~~~~~~~~~~ygIvS----CYN~L-p~---~GGa~TLvRlnL~~vA~~a  241 (487)
T PF11230_consen  171 YDPEITPDDFAEQAIENILECSKPHFANHP-MHRKDFGEGDYGIVS----CYNSL-PL---GGGAYTLVRLNLKEVAKRA  241 (487)
T ss_pred             eCCCCCcHHHHHHHHHHHHhcCCchhcCCH-hHHHhcCCCCeeEEE----ecccc-cc---CCcchhhhhhhHHHHHHHc
Confidence            346788999999999999999999986542 2222222 3445444    43332 21   1246789999998876431


Q ss_pred             CC--CCChhHHHHHHHHHHHHHHHhhhc-----CCCc----HHHHHHHHhhcCCCc-cccchHHHH----HHHcCC--CC
Q psy1689         257 DK--TYNFTKLKDVAKIVTKNLNKIIDV-----NFYP----VEEARNSNMRHRPIG-IGVQGLADL----FIQMRL--PF  318 (998)
Q Consensus       257 ~~--~fD~~~l~~~v~~avr~LD~vId~-----~~~p----~~e~~~~~~~~R~IG-LGv~GLad~----L~~lgl--~Y  318 (998)
                      ..  .|=-..|-+.+.+...++|.=|..     ++|.    +.|-  ...+.|=.| .|+.|||+.    |.+.|.  .|
T Consensus       242 ~~~~dF~~~~LP~~~~~~~~~md~R~~flvEeS~FFessFLvkEG--lI~~~rF~~MFGi~GlAEaVN~Ll~~eg~~~~y  319 (487)
T PF11230_consen  242 KDIEDFLNNVLPYYCDLMLEYMDARIRFLVEESNFFESSFLVKEG--LIERDRFTPMFGIVGLAEAVNILLEKEGKEERY  319 (487)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhcc--ccchhhcchHhHHHHHHHHHHHHHhccCCcccc
Confidence            11  122245677888888888765432     2222    2221  123445555 499999984    334444  77


Q ss_pred             C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccc
Q psy1689         319 D-CNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLL  397 (998)
Q Consensus       319 ~-S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~l  397 (998)
                      + |++|-++..+|++.|....           ..+|    .+|..|.=      -                 +-+=+||.
T Consensus       320 G~~~~An~Lg~~I~~~l~~~V-----------~~~~----~~y~~~~~------g-----------------r~lLHAQv  361 (487)
T PF11230_consen  320 GHDEEANELGVRIMEKLAEIV-----------KSHP----VKYCEGTG------G-----------------RFLLHAQV  361 (487)
T ss_pred             CCChHHHHHHHHHHHHHHHHH-----------hcCC----CccccccC------C-----------------EEEEEecc
Confidence            6 6789999999988764321           1111    12222210      0                 00112221


Q ss_pred             cccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhh
Q psy1689         398 IAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKD  477 (998)
Q Consensus       398 taiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~  477 (998)
                             .+|.=.|+|+|..=                                                     |     
T Consensus       362 -------Gi~~D~~~TPG~RI-----------------------------------------------------p-----  376 (487)
T PF11230_consen  362 -------GISSDKGVTPGVRI-----------------------------------------------------P-----  376 (487)
T ss_pred             -------CccccCCCCCCCcC-----------------------------------------------------c-----
Confidence                   13444455554321                                                     1     


Q ss_pred             hcccccCCChHHHHHHHHHhCCccccccceeEeecC---CCHHHHHHHHHHHHHcCCceEEEEeeccccccccchhhhHh
Q psy1689         478 LYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE---INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT  554 (998)
Q Consensus       478 ~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~---~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~~~~~~~~  554 (998)
                         ...|.++-+||...|..-+|-..+||=-+-+.+   .+++-+.++..=|.++|++-.+.|.-++.-...-.+-|.++
T Consensus       377 ---~G~EP~~~~hl~~~A~~H~yfpsGi~DIf~~d~T~k~NP~A~ldi~kGAf~~G~Ryfs~y~~~sDlVRVTGYlVK~S  453 (487)
T PF11230_consen  377 ---YGEEPDLVDHLQASAPFHKYFPSGIGDIFTFDETVKNNPEALLDICKGAFSLGMRYFSAYVSDSDLVRVTGYLVKRS  453 (487)
T ss_pred             ---CCCCCCHHHHHHHhcccccCCCCCcccccccchhhHhCHHHHHHHHHHHHhcCCeEEEEecCCCceEEEeeeeehhh
Confidence               122345677999999999999999997776664   46788999999999999999999988887777777777765


Q ss_pred             Hhh
Q psy1689         555 KMA  557 (998)
Q Consensus       555 ~~~  557 (998)
                      .+.
T Consensus       454 die  456 (487)
T PF11230_consen  454 DIE  456 (487)
T ss_pred             hHH
Confidence            544

This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.

>PRK14704 anaerobic ribonucleoside triphosphate reductase; Provisional

Probab=85.37  E-value=11  Score=46.92  Aligned_cols=55  Identities=11%  Similarity=0.068  Sum_probs=45.9

Q ss_pred             CCCChHhHHHHHHHhCCcccccccceeecC-C--CCHHHHHHHHHHHHHcCCcEEEEE
Q psy1689         887 WEIPQKTVLDMAADRGAFIDQSQSLNIYMA-E--INYAKMSSMHFHGWKLGLKTGMYY  941 (998)
Q Consensus       887 ~ei~~~~~I~m~a~~Q~~iDqsiS~tl~~~-~--~~~~~i~~~y~~Aw~~GlK~~~yY  941 (998)
                      .++++.++|+.++.+|++...|...-++++ +  .+++-+.++-..|.+.|+-=.+++
T Consensus       499 ~~~~~~eki~~e~~fh~~~~GG~I~hv~l~~~~~~n~~Al~~lvk~~~~~~i~Y~sin  556 (618)
T PRK14704        499 YNIQAINKIRLEGPFHALCNGGHITYIELDGAAMHNKKALKQIVQAMAEHGVGYGSIN  556 (618)
T ss_pred             CCCCHHHHHHhhcccccccCCeEEEEEEECCccCCCHHHHHHHHHHHHhcCCceEEeC
Confidence            457899999999999999999999999995 4  488999999888888776654443

>cd01675 RNR_III Class III ribonucleotide reductase

Probab=80.49  E-value=26  Score=43.18  Aligned_cols=55  Identities=16%  Similarity=0.069  Sum_probs=47.3

Q ss_pred             CCCChHhHHHHHHHhCCcccccccceeecCC--CCHHHHHHHHHHHHHcCCcEEEEE
Q psy1689         887 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAE--INYAKMSSMHFHGWKLGLKTGMYY  941 (998)
Q Consensus       887 ~ei~~~~~I~m~a~~Q~~iDqsiS~tl~~~~--~~~~~i~~~y~~Aw~~GlK~~~yY  941 (998)
                      .++++.++|+..+.+|++.+.|...-+++++  .+++.+.++-..|.+.|+.-...|
T Consensus       459 ~~~~~~eki~~e~~f~~~~~GG~i~hv~l~e~~~n~~al~~lv~~a~~~~~~y~~~~  515 (555)
T cd01675         459 EDIDPFEKIDIEAKLHPLTTGGHILHIELGEAKPNPEALEALVKKAAKRGVIYFGIN  515 (555)
T ss_pred             CCCCHHHHHHhhcccccccCCceEEEEECCCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence            4578899999999999999999999999993  489999999999999886653333

Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	998
3hnc_A	792	Crystal Structure Of Human Ribonucleotide Reductase		0.0
3hnc_A	792	Crystal Structure Of Human Ribonucleotide Reductase		5e-89
2wgh_A	676	Human Ribonucleotide Reductase R1 Subunit (Rrm1) In		0.0
2wgh_A	676	Human Ribonucleotide Reductase R1 Subunit (Rrm1) In		6e-80
3tb9_A	888	Structure Of Yeast Ribonucleotide Reductase 1 Q288a		0.0
3tb9_A	888	Structure Of Yeast Ribonucleotide Reductase 1 Q288a		1e-73
1zyz_A	888	Structures Of Yeast Ribonucloetide Reductase I Leng		0.0
1zyz_A	888	Structures Of Yeast Ribonucloetide Reductase I Leng		1e-73
3s8a_A	888	Structure Of Yeast Ribonucleotide Reductase R293a W		0.0
3s8a_A	888	Structure Of Yeast Ribonucleotide Reductase R293a W		1e-73
4r1r_A	761	Ribonucleotide Reductase R1 Protein With Substrate,		3e-35
4r1r_A	761	Ribonucleotide Reductase R1 Protein With Substrate,		2e-06
3r1r_A	761	Ribonucleotide Reductase R1 Protein With Amppnp Occ		4e-35
3r1r_A	761	Ribonucleotide Reductase R1 Protein With Amppnp Occ		2e-06
7r1r_A	761	Ribonucleotide Reductase E441q Mutant R1 Protein Fr		1e-34
7r1r_A	761	Ribonucleotide Reductase E441q Mutant R1 Protein Fr		2e-06
1r1r_A	761	Ribonucleotide Reductase R1 Protein Mutant Y730f Wi		1e-34
1r1r_A	761	Ribonucleotide Reductase R1 Protein Mutant Y730f Wi		4e-06
6r1r_A	761	Ribonucleotide Reductase E441d Mutant R1 Protein Fr		1e-34
6r1r_A	761	Ribonucleotide Reductase E441d Mutant R1 Protein Fr		2e-06
5r1r_A	761	Ribonucleotide Reductase E441a Mutant R1 Protein Fr		2e-34
5r1r_A	761	Ribonucleotide Reductase E441a Mutant R1 Protein Fr		2e-06
1rlr_A	761	Structure Of Ribonucleotide Reductase Protein R1 Le		2e-34
1rlr_A	761	Structure Of Ribonucleotide Reductase Protein R1 Le		5e-06
2xap_A	761	Ribonucleotide Reductase Y731no2y Modified R1 Subun		3e-34
2xap_A	761	Ribonucleotide Reductase Y731no2y Modified R1 Subun		1e-05
2xak_A	761	Ribonucleotide Reductase Y730no2y Modified R1 Subun		3e-34
2xak_A	761	Ribonucleotide Reductase Y730no2y Modified R1 Subun		1e-05
2xaw_A	761	Ribonucleotide Reductase Y730no2y And Y731f Modifie		3e-34
2xaw_A	761	Ribonucleotide Reductase Y730no2y And Y731f Modifie		1e-05
2xax_A	761	Ribonucleotide Reductase Y730no2y And Y731a Modifie		3e-34
2xax_A	761	Ribonucleotide Reductase Y730no2y And Y731a Modifie		1e-05
2xav_A	761	Ribonucleotide Reductase Y731no2y And Y730f Modifie		3e-34
2xav_A	761	Ribonucleotide Reductase Y731no2y And Y730f Modifie		1e-05
2xay_A	761	Ribonucleotide Reductase Y730no2y And C439a Modifie		3e-33
2xay_A	761	Ribonucleotide Reductase Y730no2y And C439a Modifie		1e-05
2xaz_A	761	Ribonucleotide Reductase Y730no2y And C439s Modifie		4e-33
2xaz_A	761	Ribonucleotide Reductase Y730no2y And C439s Modifie		1e-05
1pem_A	714	Ribonucleotide Reductase Protein R1e From Salmonell		3e-23
1xje_A	644	Structural Mechanism Of Allosteric Substrate Specif		5e-20
1xjk_A	644	Structural Mechanism Of Allosteric Substrate Specif		5e-20

>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effector Ttp Length = 792

Iteration: 1
 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 421/503 (83%), Gaps = 7/503 (1%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 591
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 769
Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788

>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effector Ttp Length = 792

Iteration: 1
 Score =  326 bits (835), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745
Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 788

>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In Complex With Datp And Mg. Length = 676

Iteration: 1
 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/451 (75%), Positives = 391/451 (86%), Gaps = 1/451 (0%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 220 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 279
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 280 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 339
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 340 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 398
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 399 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 458
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 459 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 518
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 519 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 578
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 579 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 638
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 541
           +AE NY K++SMHF+GWK GLKTGMYYLRT+
Sbjct: 639 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTR 669

>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In Complex With Datp And Mg. Length = 676

Iteration: 1
 Score =  295 bits (756), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 138/177 (77%), Positives = 154/177 (87%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 493 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 552
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 553 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 612
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+
Sbjct: 613 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTR 669

>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With Amppnp And Cdp Length = 888

Iteration: 1
 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/467 (65%), Positives = 382/467 (81%), Gaps = 5/467 (1%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P +  GLSD +G++F+ LY +YE EG+  + + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACN 411
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RKSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL  +I  ++     TYNF KL 
Sbjct: 412 RKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLH 471
Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK+VT+NLN++ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD  E+RLL
Sbjct: 472 EIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLL 531
Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFETIY+ ++EASCE+A +DGPY+T++GSP SQGILQ+DMW   P  +WDW  L++ 
Sbjct: 532 NIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKD 591
Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHGVRNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651
Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 652 LGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHS 711
Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 758

>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With Amppnp And Cdp Length = 888

Iteration: 1
 Score =  275 bits (702), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 125/189 (66%), Positives = 153/189 (80%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHGVRNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWE 689
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749
Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 750 AAIQFTIDQ 758

>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I Length = 888

Iteration: 1
 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/467 (65%), Positives = 382/467 (81%), Gaps = 5/467 (1%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P +  GLSD +G++F+ LY +YE EG+  + + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACN 411
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RKSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL  +I  ++     TYNF KL 
Sbjct: 412 RKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLH 471
Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK+VT+NLN++ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD  E+RLL
Sbjct: 472 EIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLL 531
Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFETIY+ ++EASCE+A +DGPY+T++GSP SQGILQ+DMW   P  +WDW  L++ 
Sbjct: 532 NIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKD 591
Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHGVRNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651
Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 652 LGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHS 711
Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 758

>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I Length = 888

Iteration: 1
 Score =  275 bits (702), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 125/189 (66%), Positives = 153/189 (80%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHGVRNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWE 689
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749
Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 750 AAIQFTIDQ 758

>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With Dgtp Length = 888

Iteration: 1
 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/466 (65%), Positives = 381/466 (81%), Gaps = 5/466 (1%)
Query: 92  PGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCP 151
           PGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  P
Sbjct: 294 PGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSP 353
Query: 152 NTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNR 211
            +  GLSD +G++F+ LY +YE EG+  + + A+KLW++IL++Q ETGTP+++YKDACNR
Sbjct: 354 TSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACNR 412
Query: 212 KSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLKD 267
           KSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL  +I  ++     TYNF KL +
Sbjct: 413 KSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHE 472
Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           +AK+VT+NLN++ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD  E+RLLN
Sbjct: 473 IAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLN 532
Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI 387
            QIFETIY+ ++EASCE+A +DGPY+T++GSP SQGILQ+DMW   P  +WDW  L++ I
Sbjct: 533 IQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKDI 592
Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            KHGVRNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+L
Sbjct: 593 MKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDL 652
Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           G+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWEI QKT+++MAADR  +IDQS SL
Sbjct: 653 GIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHSL 712
Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           N+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 713 NLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 758

>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With Dgtp Length = 888

Iteration: 1
 Score =  275 bits (702), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 125/189 (66%), Positives = 153/189 (80%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHGVRNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWE 689
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749
Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 750 AAIQFTIDQ 758

>pdb|4R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Substrate, Gdp And Effector Dttp From Escherichia Coli Length = 761

Iteration: 1
 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 132/488 (27%), Positives = 208/488 (42%), Gaps = 73/488 (14%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
           P+   GL D++    E+F+ LY KYE +    +Q V A +L+  ++  +  TG  Y+   
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
           D CN  S     +  ++ SNLC EI   T           E+A+C L++  L   IN   
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
              N  +L+++A +  + L+ ++D   YP+  A+   M  R +GIGV   A    +    
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
           +    +  L  + FE I Y  L+AS E+A   G    +  +  ++GIL  D +     DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
                    +DW AL+E I  HG+RNS L A MP+ +++QI       EP          
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
                        R  V +    D +  Q++ +           + L D Y+ +WE+P  
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRT 540
              L +      FIDQS S N           ++   ++       +K G+KT +YY  T
Sbjct: 676 DGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNT 734
Query: 541 KPAANAIQ 548
           +  A   Q
Sbjct: 735 RDGAEDAQ 742

>pdb|4R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Substrate, Gdp And Effector Dttp From Escherichia Coli Length = 761

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW AL+E I  HG+RNS L A MP+ +++QI       EP                   
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
               R  V +    D +  Q++ +           + L D Y+ +WE+P     L +   
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 952
              FIDQS S N           ++   ++       +K G+KT +YY  T+  A   Q
Sbjct: 685 MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNTRDGAEDAQ 742

>pdb|3R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Amppnp Occupying The Activity Site From Escherichia Coli Length = 761

Iteration: 1
 Score =  147 bits (370), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 132/488 (27%), Positives = 208/488 (42%), Gaps = 73/488 (14%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
           P+   GL D++    E+F+ LY KYE +    +Q V A +L+  ++  +  TG  Y+   
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
           D CN  S     +  ++ SNLC EI   T           E+A+C L++  L   IN   
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
              N  +L+++A +  + L+ ++D   YP+  A+   M  R +GIGV   A    +    
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
           +    +  L  + FE I Y  L+AS E+A   G    +  +  ++GIL  D +     DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
                    +DW AL+E I  HG+RNS L A MP+ +++QI       EP          
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
                        R  V +    D +  Q++ +           + L D Y+ +WE+P  
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRT 540
              L +      FIDQS S N           ++   ++       +K G+KT +YY  T
Sbjct: 676 DGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNT 734
Query: 541 KPAANAIQ 548
           +  A   Q
Sbjct: 735 RDGAEDAQ 742

>pdb|3R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Amppnp Occupying The Activity Site From Escherichia Coli Length = 761

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW AL+E I  HG+RNS L A MP+ +++QI       EP                   
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
               R  V +    D +  Q++ +           + L D Y+ +WE+P     L +   
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 952
              FIDQS S N           ++   ++       +K G+KT +YY  T+  A   Q
Sbjct: 685 MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNTRDGAEDAQ 742

>pdb|7R1R|A Chain A, Ribonucleotide Reductase E441q Mutant R1 Protein From Escherichia Coli Length = 761

Iteration: 1
 Score =  145 bits (366), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 208/488 (42%), Gaps = 73/488 (14%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
           P+   GL D++    E+F+ LY KYE +    +Q V A +L+  ++  +  TG  Y+   
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
           D CN  S     +  ++ SNLC +I   T           E+A+C L++  L   IN   
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLQIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
              N  +L+++A +  + L+ ++D   YP+  A+   M  R +GIGV   A    +    
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
           +    +  L  + FE I Y  L+AS E+A   G    +  +  ++GIL  D +     DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
                    +DW AL+E I  HG+RNS L A MP+ +++QI       EP          
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
                        R  V +    D +  Q++ +           + L D Y+ +WE+P  
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRT 540
              L +      FIDQS S N           ++   ++       +K G+KT +YY  T
Sbjct: 676 DGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNT 734
Query: 541 KPAANAIQ 548
           +  A   Q
Sbjct: 735 RDGAEDAQ 742

>pdb|7R1R|A Chain A, Ribonucleotide Reductase E441q Mutant R1 Protein From Escherichia Coli Length = 761

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW AL+E I  HG+RNS L A MP+ +++QI       EP                   
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
               R  V +    D +  Q++ +           + L D Y+ +WE+P     L +   
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 952
              FIDQS S N           ++   ++       +K G+KT +YY  T+  A   Q
Sbjct: 685 MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNTRDGAEDAQ 742

>pdb|1R1R|A Chain A, Ribonucleotide Reductase R1 Protein Mutant Y730f With A Reduced Active Site From Escherichia Coli Length = 761

Iteration: 1
 Score =  145 bits (366), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 208/488 (42%), Gaps = 73/488 (14%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
           P+   GL D++    E+F+ LY KYE +    +Q V A +L+  ++  +  TG  Y+   
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
           D CN  S     +  ++ SNLC EI   T           E+A+C L++  L   IN   
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
              N  +L+++A +  + L+ ++D   YP+  A+   M  R +GIGV   A    +    
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
           +    +  L  + FE I Y  L+AS E+A   G    +  +  ++GIL  D +     DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
                    +DW AL+E I  HG+RNS L A MP+ +++QI       EP          
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
                        R  V +    D +  Q++ +           + L D Y+ +WE+P  
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRT 540
              L +      FIDQS S N           ++   ++       +K G+KT ++Y  T
Sbjct: 676 DGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LFYQNT 734
Query: 541 KPAANAIQ 548
           +  A   Q
Sbjct: 735 RDGAEDAQ 742

>pdb|1R1R|A Chain A, Ribonucleotide Reductase R1 Protein Mutant Y730f With A Reduced Active Site From Escherichia Coli Length = 761

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW AL+E I  HG+RNS L A MP+ +++QI       EP                   
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
               R  V +    D +  Q++ +           + L D Y+ +WE+P     L +   
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 952
              FIDQS S N           ++   ++       +K G+KT ++Y  T+  A   Q
Sbjct: 685 MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LFYQNTRDGAEDAQ 742

>pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From Escherichia Coli Length = 761

Iteration: 1
 Score =  145 bits (366), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 208/488 (42%), Gaps = 73/488 (14%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
           P+   GL D++    E+F+ LY KYE +    +Q V A +L+  ++  +  TG  Y+   
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
           D CN  S     +  ++ SNLC +I   T           E+A+C L++  L   IN   
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLDIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
              N  +L+++A +  + L+ ++D   YP+  A+   M  R +GIGV   A    +    
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
           +    +  L  + FE I Y  L+AS E+A   G    +  +  ++GIL  D +     DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
                    +DW AL+E I  HG+RNS L A MP+ +++QI       EP          
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
                        R  V +    D +  Q++ +           + L D Y+ +WE+P  
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRT 540
              L +      FIDQS S N           ++   ++       +K G+KT +YY  T
Sbjct: 676 DGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNT 734
Query: 541 KPAANAIQ 548
           +  A   Q
Sbjct: 735 RDGAEDAQ 742

>pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From Escherichia Coli Length = 761

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW AL+E I  HG+RNS L A MP+ +++QI       EP                   
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
               R  V +    D +  Q++ +           + L D Y+ +WE+P     L +   
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 952
              FIDQS S N           ++   ++       +K G+KT +YY  T+  A   Q
Sbjct: 685 MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNTRDGAEDAQ 742

>pdb|5R1R|A Chain A, Ribonucleotide Reductase E441a Mutant R1 Protein From Escherichia Coli Length = 761

Iteration: 1
 Score =  144 bits (364), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 207/488 (42%), Gaps = 73/488 (14%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
           P+   GL D++    E+F+ LY KYE +    +Q V A +L+  ++  +  TG  Y+   
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
           D CN  S     +  ++ SNLC  I   T           E+A+C L++  L   IN   
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLAIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
              N  +L+++A +  + L+ ++D   YP+  A+   M  R +GIGV   A    +    
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
           +    +  L  + FE I Y  L+AS E+A   G    +  +  ++GIL  D +     DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
                    +DW AL+E I  HG+RNS L A MP+ +++QI       EP          
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
                        R  V +    D +  Q++ +           + L D Y+ +WE+P  
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRT 540
              L +      FIDQS S N           ++   ++       +K G+KT +YY  T
Sbjct: 676 DGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNT 734
Query: 541 KPAANAIQ 548
           +  A   Q
Sbjct: 735 RDGAEDAQ 742

>pdb|5R1R|A Chain A, Ribonucleotide Reductase E441a Mutant R1 Protein From Escherichia Coli Length = 761

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW AL+E I  HG+RNS L A MP+ +++QI       EP                   
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
               R  V +    D +  Q++ +           + L D Y+ +WE+P     L +   
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 952
              FIDQS S N           ++   ++       +K G+KT +YY  T+  A   Q
Sbjct: 685 MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNTRDGAEDAQ 742

>pdb|1RLR|A Chain A, Structure Of Ribonucleotide Reductase Protein R1 Length = 761

Iteration: 1
 Score =  144 bits (364), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 130/481 (27%), Positives = 205/481 (42%), Gaps = 73/481 (15%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
           P+   GL D++    E+F+ LY KYE +    +Q V A +L+  ++  +  TG  Y+   
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
           D CN  S     +  ++ SNLC EI   T           E+A+C L++  L   IN   
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
              N  +L ++A +  + L+ ++D   YP+  A+   M  R +GIGV   A    +    
Sbjct: 474 ---NLDELDELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
           +    +  L  + FE I Y  L+AS E+A   G    +  +  ++GIL  D +     DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
                    +DW AL+E I  HG+RNS L A MP+ +++QI       EP          
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
                        R  V +    D +  Q++ +           + L D Y+ +WE+P  
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRT 540
              L +      FIDQS S N           ++   ++       +K G+KT +YY  T
Sbjct: 676 DGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNT 734
Query: 541 K 541
           +
Sbjct: 735 R 735

>pdb|1RLR|A Chain A, Structure Of Ribonucleotide Reductase Protein R1 Length = 761

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 41/172 (23%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW AL+E I  HG+RNS L A MP+ +++QI       EP                   
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
               R  V +    D +  Q++ +           + L D Y+ +WE+P     L +   
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
              FIDQS S N           ++   ++       +K G+KT +YY  T+
Sbjct: 685 MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNTR 735

>pdb|2XAP|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of E. Coli To 2.1 A Resolution Length = 761

Iteration: 1
 Score =  144 bits (362), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 191/441 (43%), Gaps = 65/441 (14%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
           P+   GL D++    E+F+ LY KYE +    +Q V A +L+  ++  +  TG  Y+   
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
           D CN  S     +  ++ SNLC EI   T           E+A+C L++  L   IN   
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
              N  +L+++A +  + L+ ++D   YP+  A+   M  R +GIGV   A    +    
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
           +    +  L  + FE I Y  L+AS E+A   G    +  +  ++GIL  D +     DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
                    +DW AL+E I  HG+RNS L A MP+ +++QI       EP          
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
                        R  V +    D +  Q++ +           + L D Y+ +WE+P  
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLN 508
              L +      FIDQS S N
Sbjct: 676 DGYLQLVGIMQKFIDQSISAN 696

>pdb|2XAP|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of E. Coli To 2.1 A Resolution Length = 761

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 33/132 (25%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW AL+E I  HG+RNS L A MP+ +++QI       EP                   
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
               R  V +    D +  Q++ +           + L D Y+ +WE+P     L +   
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLN 912
              FIDQS S N
Sbjct: 685 MQKFIDQSISAN 696

>pdb|2XAK|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of E. Coli Length = 761

Iteration: 1
 Score =  144 bits (362), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 191/441 (43%), Gaps = 65/441 (14%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
           P+   GL D++    E+F+ LY KYE +    +Q V A +L+  ++  +  TG  Y+   
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
           D CN  S     +  ++ SNLC EI   T           E+A+C L++  L   IN   
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
              N  +L+++A +  + L+ ++D   YP+  A+   M  R +GIGV   A    +    
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
           +    +  L  + FE I Y  L+AS E+A   G    +  +  ++GIL  D +     DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
                    +DW AL+E I  HG+RNS L A MP+ +++QI       EP          
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
                        R  V +    D +  Q++ +           + L D Y+ +WE+P  
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLN 508
              L +      FIDQS S N
Sbjct: 676 DGYLQLVGIMQKFIDQSISAN 696

>pdb|2XAK|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of E. Coli Length = 761

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 33/132 (25%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW AL+E I  HG+RNS L A MP+ +++QI       EP                   
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
               R  V +    D +  Q++ +           + L D Y+ +WE+P     L +   
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLN 912
              FIDQS S N
Sbjct: 685 MQKFIDQSISAN 696

>pdb|2XAW|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1 Subunit Of E. Coli Length = 761

Iteration: 1
 Score =  144 bits (362), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 191/441 (43%), Gaps = 65/441 (14%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
           P+   GL D++    E+F+ LY KYE +    +Q V A +L+  ++  +  TG  Y+   
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
           D CN  S     +  ++ SNLC EI   T           E+A+C L++  L   IN   
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
              N  +L+++A +  + L+ ++D   YP+  A+   M  R +GIGV   A    +    
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
           +    +  L  + FE I Y  L+AS E+A   G    +  +  ++GIL  D +     DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
                    +DW AL+E I  HG+RNS L A MP+ +++QI       EP          
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
                        R  V +    D +  Q++ +           + L D Y+ +WE+P  
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLN 508
              L +      FIDQS S N
Sbjct: 676 DGYLQLVGIMQKFIDQSISAN 696

>pdb|2XAW|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1 Subunit Of E. Coli Length = 761

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 33/132 (25%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW AL+E I  HG+RNS L A MP+ +++QI       EP                   
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
               R  V +    D +  Q++ +           + L D Y+ +WE+P     L +   
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLN 912
              FIDQS S N
Sbjct: 685 MQKFIDQSISAN 696

>pdb|2XAX|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1 Subunit Of E. Coli Length = 761

Iteration: 1
 Score =  144 bits (362), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 191/441 (43%), Gaps = 65/441 (14%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
           P+   GL D++    E+F+ LY KYE +    +Q V A +L+  ++  +  TG  Y+   
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
           D CN  S     +  ++ SNLC EI   T           E+A+C L++  L   IN   
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
              N  +L+++A +  + L+ ++D   YP+  A+   M  R +GIGV   A    +    
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
           +    +  L  + FE I Y  L+AS E+A   G    +  +  ++GIL  D +     DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
                    +DW AL+E I  HG+RNS L A MP+ +++QI       EP          
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
                        R  V +    D +  Q++ +           + L D Y+ +WE+P  
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLN 508
              L +      FIDQS S N
Sbjct: 676 DGYLQLVGIMQKFIDQSISAN 696

>pdb|2XAX|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1 Subunit Of E. Coli Length = 761

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 33/132 (25%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW AL+E I  HG+RNS L A MP+ +++QI       EP                   
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
               R  V +    D +  Q++ +           + L D Y+ +WE+P     L +   
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLN 912
              FIDQS S N
Sbjct: 685 MQKFIDQSISAN 696

>pdb|2XAV|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1 Subunit Of E. Coli Length = 761

Iteration: 1
 Score =  144 bits (362), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 191/441 (43%), Gaps = 65/441 (14%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
           P+   GL D++    E+F+ LY KYE +    +Q V A +L+  ++  +  TG  Y+   
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
           D CN  S     +  ++ SNLC EI   T           E+A+C L++  L   IN   
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
              N  +L+++A +  + L+ ++D   YP+  A+   M  R +GIGV   A    +    
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
           +    +  L  + FE I Y  L+AS E+A   G    +  +  ++GIL  D +     DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
                    +DW AL+E I  HG+RNS L A MP+ +++QI       EP          
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
                        R  V +    D +  Q++ +           + L D Y+ +WE+P  
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLN 508
              L +      FIDQS S N
Sbjct: 676 DGYLQLVGIMQKFIDQSISAN 696

>pdb|2XAV|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1 Subunit Of E. Coli Length = 761

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 33/132 (25%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW AL+E I  HG+RNS L A MP+ +++QI       EP                   
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
               R  V +    D +  Q++ +           + L D Y+ +WE+P     L +   
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLN 912
              FIDQS S N
Sbjct: 685 MQKFIDQSISAN 696

>pdb|2XAY|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1 Subunit Of E. Coli Length = 761

Iteration: 1
 Score =  140 bits (353), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 190/441 (43%), Gaps = 65/441 (14%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
           P+   GL D++    E+F+ LY KYE +    +Q V A +L+  ++  +  TG  Y+   
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
           D CN  S     +  ++ SNL  EI   T           E+A+C L++  L   IN   
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLALEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
              N  +L+++A +  + L+ ++D   YP+  A+   M  R +GIGV   A    +    
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
           +    +  L  + FE I Y  L+AS E+A   G    +  +  ++GIL  D +     DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
                    +DW AL+E I  HG+RNS L A MP+ +++QI       EP          
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
                        R  V +    D +  Q++ +           + L D Y+ +WE+P  
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLN 508
              L +      FIDQS S N
Sbjct: 676 DGYLQLVGIMQKFIDQSISAN 696

>pdb|2XAY|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1 Subunit Of E. Coli Length = 761

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 33/132 (25%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW AL+E I  HG+RNS L A MP+ +++QI       EP                   
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
               R  V +    D +  Q++ +           + L D Y+ +WE+P     L +   
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLN 912
              FIDQS S N
Sbjct: 685 MQKFIDQSISAN 696

>pdb|2XAZ|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1 Subunit Of E. Coli Length = 761

Iteration: 1
 Score =  140 bits (353), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 190/441 (43%), Gaps = 65/441 (14%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
           P+   GL D++    E+F+ LY KYE +    +Q V A +L+  ++  +  TG  Y+   
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
           D CN  S     +  ++ SNL  EI   T           E+A+C L++  L   IN   
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLSLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
              N  +L+++A +  + L+ ++D   YP+  A+   M  R +GIGV   A    +    
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
           +    +  L  + FE I Y  L+AS E+A   G    +  +  ++GIL  D +     DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
                    +DW AL+E I  HG+RNS L A MP+ +++QI       EP          
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
                        R  V +    D +  Q++ +           + L D Y+ +WE+P  
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLN 508
              L +      FIDQS S N
Sbjct: 676 DGYLQLVGIMQKFIDQSISAN 696

>pdb|2XAZ|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1 Subunit Of E. Coli Length = 761

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 33/132 (25%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW AL+E I  HG+RNS L A MP+ +++QI       EP                   
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
               R  V +    D +  Q++ +           + L D Y+ +WE+P     L +   
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLN 912
              FIDQS S N
Sbjct: 685 MQKFIDQSISAN 696

>pdb|1PEM|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella Typhimurium Length = 714

Iteration: 1
 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/493 (22%), Positives = 193/493 (39%), Gaps = 82/493 (16%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YL   H DI  FL+ K+    E+ R + L  G+ IPD   R  + +AQ +L  
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFS 310
Query: 151 P-NTCRGLSDSWG-----EKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P +  R     +G     E++D+L         +I    AR  +  + + Q E+G PY++
Sbjct: 311 PYDIQRRYGKPFGDIAISERYDELIADPHVRKTYIN---ARDFFQTLAEIQFESGYPYIM 367
Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVE------------YTSKDEVAVCNLASIALNMY 252
           ++D  NR +     G I  SNLC+EI++            YT       CNL S+ +   
Sbjct: 368 FEDTVNRANPIA--GRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV 425
Query: 253 INPADKTYNFTKLKDVAKIVTKNLNKIIDV-NFYPVEEARNSNMRHRPIGIGVQGLADLF 311
           ++  D       +    +   + L  + D+ +   V      N     IG+G   L    
Sbjct: 426 MDSPD-------IGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478
Query: 312 IQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQG--ILQY- 367
            +  + +   E+       F TI + A+  S  +A   G  +  +  S  + G    QY 
Sbjct: 479 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538
Query: 368 -DMW--------------GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN 412
            D W              G+T      W  L++ + ++G+ N  L A  PT S + I   
Sbjct: 539 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598
Query: 413 NESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIP 472
             S  P  + I  R+                           K   +         E + 
Sbjct: 599 TSSIHPIVAKIEIRK-------------------------EGKTGRVYYPAPFMTNENL- 632
Query: 473 QKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAK-MSSMHFHGWKLGL 531
               D+Y+  ++I  + ++D  A+    +DQ  SL ++  +    + ++    + W+ G+
Sbjct: 633 ----DMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688
Query: 532 KTGMYYLRTKPAA 544
           K+ +YY+R +  A
Sbjct: 689 KS-LYYIRLRQLA 700

>pdb|1XJE|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dttp-Gdp Complex Length = 644

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 181/439 (41%), Gaps = 58/439 (13%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKK-NTGKEEFRARDLFYGLWI-PDEFMRRVESDAQWSL 148
           R GA    L   H DI +F++ KK NTG+      +L  G  +   E ++  E D +  L
Sbjct: 207 RRGALMGILNINHPDIEEFIDAKKENTGEAVLNFFNLSVGFPMDKKEILKLYEEDGELEL 266
Query: 149 MCP-NTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKD 207
             P +T R                        ++V  R+L+  I  +  ++G P + +  
Sbjct: 267 SHPRSTIR------------------------KKVKIRELFRKIATNAWKSGDPGLAFLG 302
Query: 208 ACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKD 267
             N+         I  +N C EI       +   CNL SI +  + N  +   +   L++
Sbjct: 303 EMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSIDVAKFYN--NGFVDLEALQE 356
Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           + +I  + L+ +IDVN +P+++   +    R +G+G+ G ADL  ++ +P++  E+R   
Sbjct: 357 LVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQEARDFA 416
Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGS---------PVSQGILQYDMWGVTPTDLW 378
             +   I   A   S E+    G +   E S         P + G+  YD          
Sbjct: 417 ANLMAFIALHAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGMSNYD---------- 466
Query: 379 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL----SGEFQ 434
           D      K+ K   RN  L+   PT S + I   +   EP     Y+R V     + E  
Sbjct: 467 DEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRFVTKEDGTKEPL 526
Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           +  + +LR+ +   +     K+  ++  GS++DI  +P+K+K ++    +I     L M 
Sbjct: 527 LYVNQVLREKLNPEILKRIEKE--LIEKGSLKDIPDVPEKIKKVFVVALDIDPMDHLLMQ 584
Query: 495 ADRGAFIDQSQSLNIYMAE 513
                ++D + S  I M +
Sbjct: 585 DAFQRYVDNNISKTINMPQ 603

>pdb|1XJK|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dgtp-Adp Complex Length = 644

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 181/439 (41%), Gaps = 58/439 (13%)
Query: 91  RPGAFAIYLEPWHGDIFDFLELKK-NTGKEEFRARDLFYGLWI-PDEFMRRVESDAQWSL 148
           R GA    L   H DI +F++ KK NTG+      +L  G  +   E ++  E D +  L
Sbjct: 207 RRGALMGILNINHPDIEEFIDAKKENTGEAVLNFFNLSVGFPMDKKEILKLYEEDGELEL 266
Query: 149 MCP-NTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKD 207
             P +T R                        ++V  R+L+  I  +  ++G P + +  
Sbjct: 267 SHPRSTIR------------------------KKVKIRELFRKIATNAWKSGDPGLAFLG 302
Query: 208 ACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKD 267
             N+         I  +N C EI       +   CNL SI +  + N  +   +   L++
Sbjct: 303 EMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSIDVAKFYN--NGFVDLEALQE 356
Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           + +I  + L+ +IDVN +P+++   +    R +G+G+ G ADL  ++ +P++  E+R   
Sbjct: 357 LVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQEARDFA 416
Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGS---------PVSQGILQYDMWGVTPTDLW 378
             +   I   A   S E+    G +   E S         P + G+  YD          
Sbjct: 417 ANLMAFIALHAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGMSNYD---------- 466
Query: 379 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL----SGEFQ 434
           D      K+ K   RN  L+   PT S + I   +   EP     Y+R V     + E  
Sbjct: 467 DEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRFVTKDDGTKEPL 526
Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           +  + +LR+ +   +     K+  ++  GS++DI  +P+K+K ++    +I     L M 
Sbjct: 527 LYVNQVLREKLNPEILKRIEKE--LIEKGSLKDIPDVPEKIKKVFVVALDIDPMDHLLMQ 584
Query: 495 ADRGAFIDQSQSLNIYMAE 513
                ++D + S  I M +
Sbjct: 585 DAFQRYVDNNISKTINMPQ 603

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	998
3hnc_A	792	Ribonucleoside-diphosphate reductase large subuni;	0.0
3hnc_A	792	Ribonucleoside-diphosphate reductase large subuni;	1e-113
3hnc_A	792	Ribonucleoside-diphosphate reductase large subuni;	2e-36
3hnc_A	792	Ribonucleoside-diphosphate reductase large subuni;	4e-33
3hnc_A	792	Ribonucleoside-diphosphate reductase large subuni;	8e-14
3hnc_A	792	Ribonucleoside-diphosphate reductase large subuni;	5e-11
2wgh_A	676	Ribonucleoside-diphosphate reductase large subunit	0.0
2wgh_A	676	Ribonucleoside-diphosphate reductase large subunit	1e-104
2wgh_A	676	Ribonucleoside-diphosphate reductase large subunit	3e-40
2wgh_A	676	Ribonucleoside-diphosphate reductase large subunit	9e-35
2wgh_A	676	Ribonucleoside-diphosphate reductase large subunit	3e-15
2wgh_A	676	Ribonucleoside-diphosphate reductase large subunit	3e-09
3k8t_A	888	Ribonucleoside-diphosphate reductase large chain;	0.0
3k8t_A	888	Ribonucleoside-diphosphate reductase large chain;	1e-108
3k8t_A	888	Ribonucleoside-diphosphate reductase large chain;	3e-35
3k8t_A	888	Ribonucleoside-diphosphate reductase large chain;	1e-32
3k8t_A	888	Ribonucleoside-diphosphate reductase large chain;	1e-13
3k8t_A	888	Ribonucleoside-diphosphate reductase large chain;	8e-11
2xap_A	761	Ribonucleoside-diphosphate reductase 1 subunit alp	0.0
2xap_A	761	Ribonucleoside-diphosphate reductase 1 subunit alp	7e-65
2xap_A	761	Ribonucleoside-diphosphate reductase 1 subunit alp	1e-41
2xap_A	761	Ribonucleoside-diphosphate reductase 1 subunit alp	2e-31
2xap_A	761	Ribonucleoside-diphosphate reductase 1 subunit alp	4e-11
2xap_A	761	Ribonucleoside-diphosphate reductase 1 subunit alp	7e-08
3o0q_A	644	Ribonucleoside-diphosphate reductase; alpha/beta b	0.0
3o0q_A	644	Ribonucleoside-diphosphate reductase; alpha/beta b	1e-78
3o0q_A	644	Ribonucleoside-diphosphate reductase; alpha/beta b	2e-26
3o0q_A	644	Ribonucleoside-diphosphate reductase; alpha/beta b	7e-23
3o0q_A	644	Ribonucleoside-diphosphate reductase; alpha/beta b	1e-12
1peq_A	714	Ribonucleoside-diphosphate reductase 2 alpha chain	0.0
1peq_A	714	Ribonucleoside-diphosphate reductase 2 alpha chain	9e-65
1peq_A	714	Ribonucleoside-diphosphate reductase 2 alpha chain	3e-36
1peq_A	714	Ribonucleoside-diphosphate reductase 2 alpha chain	9e-25
1peq_A	714	Ribonucleoside-diphosphate reductase 2 alpha chain	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A* Length = 792

 Score =  768 bits (1984), Expect = 0.0
 Identities = 358/502 (71%), Positives = 420/502 (83%), Gaps = 7/502 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+   + TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTS-EHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +            
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKE----- 766

Query: 571 IQADQEQAMAAMICRRDNKEDC 592
            + ++E+  AAM+C  +N+++C
Sbjct: 767 -EEEKERNTAAMVCSLENRDEC 787

>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A* Length = 792

 Score =  366 bits (941), Expect = e-113
 Identities = 156/229 (68%), Positives = 185/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +             + ++E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKVSKE------EEEKERNTAAMVCSLENRDECL 788

>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A* Length = 792

 Score =  147 bits (372), Expect = 2e-36
 Identities = 64/98 (65%), Positives = 76/98 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIY 98
           PN C GL + WGE+F+ LY  YE +G V     A  ++
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLW 390

>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A* Length = 792

 Score =  136 bits (344), Expect = 4e-33
 Identities = 67/91 (73%), Positives = 75/91 (82%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   GPY+TYEGSPVS
Sbjct: 503 IGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGL 683
           +GILQYDMW VTPTDLWDW  LK     YG+
Sbjct: 563 KGILQYDMWNVTPTDLWDWKVLKEKIAKYGI 593

>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A* Length = 792

 Score = 74.9 bits (184), Expect = 8e-14
 Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 5/69 (7%)

Query: 702 LYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 761
           L+K+     S     +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRD
Sbjct: 86  LHKETKKVFS-----DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRD 140

Query: 762 FNYNFFGFK 770
           F+YN+FGFK
Sbjct: 141 FSYNYFGFK 149

>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A* Length = 792

 Score = 65.7 bits (160), Expect = 5e-11
 Identities = 28/37 (75%), Positives = 33/37 (89%)

Query: 683 LKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
            +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I
Sbjct: 387 QQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTI 423

>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens} Length = 676

 Score =  745 bits (1924), Expect = 0.0
 Identities = 341/454 (75%), Positives = 390/454 (85%), Gaps = 1/454 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 220 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 279

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 280 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 339

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+   + TY+F KL +V K
Sbjct: 340 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTS-EHTYDFKKLAEVTK 398

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 399 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 458

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 459 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 518

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 519 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 578

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 579 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 638

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 544
           +AE NY K++SMHF+GWK GLKTGMYYLRT+   
Sbjct: 639 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRAHH 672

>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens} Length = 676

 Score =  338 bits (868), Expect = e-104
 Identities = 138/180 (76%), Positives = 154/180 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 493 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 552

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 553 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 612

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+   
Sbjct: 613 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRAHH 672

>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens} Length = 676

 Score =  158 bits (400), Expect = 3e-40
 Identities = 64/98 (65%), Positives = 76/98 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 220 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 279

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIY 98
           PN C GL + WGE+F+ LY  YE +G V     A  ++
Sbjct: 280 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLW 317

>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens} Length = 676

 Score =  141 bits (356), Expect = 9e-35
 Identities = 67/91 (73%), Positives = 75/91 (82%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   GPY+TYEGSPVS
Sbjct: 430 IGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVS 489

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGL 683
           +GILQYDMW VTPTDLWDW  LK     YG+
Sbjct: 490 KGILQYDMWNVTPTDLWDWKVLKEKIAKYGI 520

>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens} Length = 676

 Score = 79.5 bits (196), Expect = 3e-15
 Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 5/69 (7%)

Query: 702 LYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 761
           L+K+     S     +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRD
Sbjct: 13  LHKETKKVFS-----DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRD 67

Query: 762 FNYNFFGFK 770
           F+YN+FGFK
Sbjct: 68  FSYNYFGFK 76

>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens} Length = 676

 Score = 59.8 bits (145), Expect = 3e-09
 Identities = 29/40 (72%), Positives = 34/40 (85%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I
Sbjct: 311 VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTI 350

>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A* Length = 888

 Score =  751 bits (1941), Expect = 0.0
 Identities = 306/495 (61%), Positives = 388/495 (78%), Gaps = 5/495 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P +  GLSD +G++F+ LY +YE EG+    + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEGRGKT-IKAQKLWYSILEAQTETGTPFVVYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RKSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL  +I  ++     TYNF KL 
Sbjct: 412 RKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK+VT+NLN++ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD  E+RLL
Sbjct: 472 EIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFETIY+ ++EASCE+A +DGPY+T++GSP SQGILQ+DMW   P  +WDW  L++ 
Sbjct: 532 NIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHGVRNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 652 LGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+     A  +    
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKIADQATENVADI 771

Query: 567 SQEEIQADQEQAMAA 581
           S  +  +    + + 
Sbjct: 772 SNLKRPSYMPSSASY 786

>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A* Length = 888

 Score =  356 bits (915), Expect = e-108
 Identities = 138/296 (46%), Positives = 186/296 (62%), Gaps = 24/296 (8%)

Query: 709 RKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAII----------- 757
           RKSN ++  +   +  + +     R P  S++   + ++  + +  A +           
Sbjct: 496 RKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDG 555

Query: 758 -YDRDFNYNFFG-------FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTAS 809
            Y+      F G        ++DMW   P  +WDW  L++ I KHGVRNSL +APMPTAS
Sbjct: 556 PYE-----TFQGSPASQGILQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSLTMAPMPTAS 610

Query: 810 TAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSI 869
           T+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+LG+WD+ MK  LI  NGSI
Sbjct: 611 TSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSI 670

Query: 870 QDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFH 929
           Q +  +PQ+LKDLYKTVWEI QKT+++MAADR  +IDQS SLN+++      K++SMHF+
Sbjct: 671 QGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFY 730

Query: 930 GWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAA 985
           GWK GLKTGMYYLRT+ A+ AIQFTID+     A  +    S  +  +    + + 
Sbjct: 731 GWKKGLKTGMYYLRTQAASAAIQFTIDQKIADQATENVADISNLKRPSYMPSSASY 786

>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A* Length = 888

 Score =  143 bits (363), Expect = 3e-35
 Identities = 54/86 (62%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P +  GLSD +G++F+ LY +YE EG
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEG 378

>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A* Length = 888

 Score =  135 bits (342), Expect = 1e-32
 Identities = 54/91 (59%), Positives = 72/91 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +RLPFD  E+RLLN QIFETIY+ ++EASCE+A +DGPY+T++GSP S
Sbjct: 507 LGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPAS 566

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGL 683
           QGILQ+DMW   P  +WDW  L+   + +G+
Sbjct: 567 QGILQFDMWDQKPYGMWDWDTLRKDIMKHGV 597

>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A* Length = 888

 Score = 74.2 bits (182), Expect = 1e-13
 Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 5/71 (7%)

Query: 700 YMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYD 759
             L+K         Q  +V+E+LY  VN  TG   PMISD  Y I+M+N D+LNSAI+YD
Sbjct: 84  SNLHKQTTK-----QFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYD 138

Query: 760 RDFNYNFFGFK 770
           RDF Y++FGFK
Sbjct: 139 RDFQYSYFGFK 149

>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A* Length = 888

 Score = 65.3 bits (159), Expect = 8e-11
 Identities = 26/37 (70%), Positives = 34/37 (91%)

Query: 683 LKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
            KLW++IL++Q ETGTP+++YKDACNRKSNQ+NL VI
Sbjct: 386 QKLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVI 422

>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B Length = 761

 Score =  687 bits (1775), Expect = 0.0
 Identities = 125/491 (25%), Positives = 200/491 (40%), Gaps = 67/491 (13%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357

Query: 151 PNTCRGLSDSWG---EKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
           P+   GL D++    E+F+ LY KYE +    +Q V A +L+  ++  +  TG  Y+   
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417

Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
           D CN  S     +  ++ SNLC EI   T           E+A+C L++  L        
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL-------G 470

Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
              N  +L+++A +  + L+ ++D   YP+  A+   M  R +GIGV   A    +    
Sbjct: 471 AINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530

Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------ 371
           +    +  L  + FE I Y  L+AS E+A   G    +  +  ++GIL  D +       
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTI 590

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
                 +DW AL+E I  HG+RNS L A MP+ +++QI       EP    +  +    G
Sbjct: 591 ANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDG 650

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTV 490
             + V                                    + L D Y+ +WE+P     
Sbjct: 651 ILRQVVPDY--------------------------------EHLHDAYELLWEMPGNDGY 678

Query: 491 LDMAADRGAFIDQSQSLNIYMAEINY-------AKMSSMHFHGWKLGLKTGMYYLRTKPA 543
           L +      FIDQS S N       +        ++       +K G+KT +Y   T+  
Sbjct: 679 LQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYXQNTRDG 737

Query: 544 ANAIQFTIDKT 554
           A   Q  +  +
Sbjct: 738 AEDAQDDLVPS 748

>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B Length = 761

 Score =  232 bits (595), Expect = 7e-65
 Identities = 44/204 (21%), Positives = 69/204 (33%), Gaps = 47/204 (23%)

Query: 769 FKYDMWG------VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEP 822
              D +             +DW AL+E I  HG+RNS L A MP+ +++QI       EP
Sbjct: 578 LPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 823 YTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDL 882
               +  +    G  + V                                    + L D 
Sbjct: 638 PRGYVSIKASKDGILRQVVPDY--------------------------------EHLHDA 665

Query: 883 YKTVWEIP-QKTVLDMAADRGAFIDQSQSLNIYMAEINY-------AKMSSMHFHGWKLG 934
           Y+ +WE+P     L +      FIDQS S N       +        ++       +K G
Sbjct: 666 YELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 935 LKTGMYYLRTKPAANAIQFTIDKT 958
           +KT +Y   T+  A   Q  +  +
Sbjct: 726 VKT-LYXQNTRDGAEDAQDDLVPS 748

>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B Length = 761

 Score =  163 bits (414), Expect = 1e-41
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357

Query: 61  PNACRGLSDSWG---EKFDDLYKKYEAEGLVYFR 91
           P+   GL D++    E+F+ LY KYE +  +  +
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQ 391

>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B Length = 761

 Score =  131 bits (331), Expect = 2e-31
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGV   A    +    +    +  L  + FE I Y  L+AS E+A   G    +  +  +
Sbjct: 515 IGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYA 574

Query: 653 QGILQYDMWG------VTPTDLWDWAALKVLALVYGL 683
           +GIL  D +             +DW AL+     +GL
Sbjct: 575 KGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGL 611

>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B Length = 761

 Score = 66.2 bits (162), Expect = 4e-11
 Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSN-QQNLEVI 719
           +L+  ++  +  TG  Y+   D CN  S     +  +
Sbjct: 397 ELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPV 433

>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B Length = 761

 Score = 55.4 bits (134), Expect = 7e-08
 Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 17/115 (14%)

Query: 658 YDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLE 717
           YD  G+  +D+ +        L+      +  L +++     + L K A  +        
Sbjct: 50  YD--GIKTSDIHETIIKAAADLISRDAPDYQYLAARLAI---FHLRKKAYGQFE------ 98

Query: 718 VIEELYNMVNK--ETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
               LY+ V K  E G     + + + E   +   ++++ I +DRD  +++   K
Sbjct: 99  -PPALYDHVVKMVEMGKYDNHLLEDYTE---EEFKQMDTFIDHDRDMTFSYAAVK 149

>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjk_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* Length = 644

 Score =  640 bits (1654), Expect = 0.0
 Identities = 98/467 (20%), Positives = 189/467 (40%), Gaps = 39/467 (8%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKK-NTGKEEFRARDLFYGLWI-PDEFMRRVESDAQWSL 148
           R GA    L   H DI +F++ KK NTG+      +L  G  +   E ++  E D +  L
Sbjct: 207 RRGALMGILNINHPDIEEFIDAKKENTGEAVLNFFNLSVGFPMDKKEILKLYEEDGELEL 266

Query: 149 MCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDA 208
             P                            ++V  R+L+  I  +  ++G P + +   
Sbjct: 267 SHP-----------------------RSTIRKKVKIRELFRKIATNAWKSGDPGLAFLGE 303

Query: 209 CNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
            N+         I  +N C EI       +   CNL SI +  + N  +   +   L+++
Sbjct: 304 MNKYYPLYPHRKINSTNPCGEIGLS----DYEACNLGSIDVAKFYN--NGFVDLEALQEL 357

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +I  + L+ +IDVN +P+++   +    R +G+G+ G ADL  ++ +P++  E+R    
Sbjct: 358 VQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQEARDFAA 417

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
            +   I   A   S E+    G +   E S        +  + +  ++  D      K+ 
Sbjct: 418 NLMAFIALHAHRTSYELGKEKGNFPLLEISRYRTE-DNFVPFAMGMSNYDDEIREVMKMT 476

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           K   RN  L+   PT S + I   +   EP     Y+R V   +        +  ++   
Sbjct: 477 KEFRRNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRFVTKEDGTKEPLLYVNQVLREK 536

Query: 449 LWDDNMKD--QLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           L  + +K   + ++  GS++DI  +P+K+K ++    +I     L M      ++D + S
Sbjct: 537 LNPEILKRIEKELIEKGSLKDIPDVPEKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNIS 596

Query: 507 LNIYMAE-INYAKMSSMHFHGWKLGLKTGMYY----LRTKPAANAIQ 548
             I M +      + +++    +  ++    Y    L+T+    A++
Sbjct: 597 KTINMPQSATVDDVLNVYLEALRTNVRGITVYRDGSLQTQVLTKALK 643

>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjk_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* Length = 644

 Score =  269 bits (689), Expect = 1e-78
 Identities = 35/192 (18%), Positives = 77/192 (40%), Gaps = 7/192 (3%)

Query: 768 GFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
              +  + +  ++  D      K+ K   RN  L+   PT S + I   +   EP     
Sbjct: 452 EDNFVPFAMGMSNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNFLLA 511

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKD--QLIVNNGSIQDIEGIPQKLKDLYKT 885
           Y+R V   +        +  ++   L  + +K   + ++  GS++DI  +P+K+K ++  
Sbjct: 512 YTRFVTKEDGTKEPLLYVNQVLREKLNPEILKRIEKELIEKGSLKDIPDVPEKIKKVFVV 571

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYY--- 941
             +I     L M      ++D + S  I M +      + +++    +  ++    Y   
Sbjct: 572 ALDIDPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITVYRDG 631

Query: 942 -LRTKPAANAIQ 952
            L+T+    A++
Sbjct: 632 SLQTQVLTKALK 643

>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjk_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* Length = 644

 Score =  115 bits (289), Expect = 2e-26
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 1/91 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G ADL  ++ +P++  E+R     +   I   A   S E+    G +   E S   
Sbjct: 391 LGIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISRYR 450

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGL 683
                +  + +  ++  D     +       
Sbjct: 451 TE-DNFVPFAMGMSNYDDEIREVMKMTKEFR 480

>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjk_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* Length = 644

 Score =  103 bits (259), Expect = 7e-23
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKK-NTGKEEFRARDLFYGLWI-PDEFMRRVESDAQWSL 58
           R GA    L   H DI +F++ KK NTG+      +L  G  +   E ++  E D +  L
Sbjct: 207 RRGALMGILNINHPDIEEFIDAKKENTGEAVLNFFNLSVGFPMDKKEILKLYEEDGELEL 266

Query: 59  MCPN 62
             P 
Sbjct: 267 SHPR 270

>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjk_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* Length = 644

 Score = 70.8 bits (174), Expect = 1e-12
 Identities = 6/37 (16%), Positives = 14/37 (37%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +L+  I  +  ++G P + +    N+         I 
Sbjct: 281 ELFRKIATNAWKSGDPGLAFLGEMNKYYPLYPHRKIN 317

>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E* Length = 714

 Score =  628 bits (1622), Expect = 0.0
 Identities = 105/498 (21%), Positives = 188/498 (37%), Gaps = 84/498 (16%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YL   H DI  FL+ K+    E+ R + L  G+ IPD   R  + +AQ +L  
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFS 310

Query: 151 PNTCRGLSDSWGEKFDDL-----YKKYEAEGKFI-RQVPARKLWFAILDSQIETGTPYML 204
           P   +     +G+ F D+     Y +  A+       + AR  +  + + Q E+G PY++
Sbjct: 311 PYDIQRR---YGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIM 367

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKD------------EVAVCNLASIALNMY 252
           ++D  NR +     G I  SNLC+EI++  S                  CNL S+ +   
Sbjct: 368 FEDTVNRANPIA--GRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV 425

Query: 253 INPADKTYNFTKLKDVAKIVTKNLNKIIDVNFY-PVEEARNSNMRHRPIGIGVQGLADLF 311
           +       +   +    +   + L  + D++    V      N     IG+G   L    
Sbjct: 426 M-------DSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 312 IQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGIL----Q 366
            +  + +   E+       F TI + A+  S  +A   G  +  +  S  + G       
Sbjct: 479 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538

Query: 367 YDMW--------------GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN 412
            D W              G+T      W  L++ + ++G+ N  L A  PT S + I   
Sbjct: 539 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 413 NESFEPYTSNIYSRRV-LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGI 471
             S  P  + I  R+   +G        +                               
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFM------------------------------- 627

Query: 472 PQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLG 530
             +  D+Y+  ++I  + ++D  A+    +DQ  SL ++  +      ++    + W+ G
Sbjct: 628 TNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 531 LKTGMYYLRTKPAANAIQ 548
           +K+ +YY+R +  A    
Sbjct: 688 IKS-LYYIRLRQLALEGT 704

>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E* Length = 714

 Score =  231 bits (592), Expect = 9e-65
 Identities = 33/184 (17%), Positives = 68/184 (36%), Gaps = 34/184 (18%)

Query: 771 YDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSR 830
           +   G+T      W  L++ + ++G+ N  L A  PT S + I     S  P  + I  R
Sbjct: 553 FARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIR 612

Query: 831 RV-LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI 889
           +   +G        +                                 +  D+Y+  ++I
Sbjct: 613 KEGKTGRVYYPAPFM-------------------------------TNENLDMYQDAYDI 641

Query: 890 PQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
             + ++D  A+    +DQ  SL ++  +      ++    + W+ G+K+ +YY+R +  A
Sbjct: 642 GPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS-LYYIRLRQLA 700

Query: 949 NAIQ 952
               
Sbjct: 701 LEGT 704

>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E* Length = 714

 Score =  146 bits (370), Expect = 3e-36
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 8/96 (8%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YL   H DI  FL+ K+    E+ R + L  G+ IPD   R  + +AQ +L  
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFS 310

Query: 61  PNACRGLSDSWGEKFDDL-----YKKYEAEGLVYFR 91
           P   +     +G+ F D+     Y +  A+  V   
Sbjct: 311 PYDIQRR---YGKPFGDIAISERYDELIADPHVRKT 343

>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E* Length = 714

 Score =  110 bits (276), Expect = 9e-25
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 19/110 (17%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPV 651
           +G   L     +  + +   E+       F TI + A+  S  +A   G  +  +  S  
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRY 528

Query: 652 SQGIL----QYDMW--------------GVTPTDLWDWAALKVLALVYGL 683
           + G        D W              G+T      W  L+   + YG+
Sbjct: 529 ASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGI 578

>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E* Length = 714

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQ 714
             +  + + Q E+G PY++++D  NR +   
Sbjct: 349 DFFQTLAEIQFESGYPYIMFEDTVNRANPIA 379

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 79.9 bits (196), Expect = 3e-15
 Identities = 85/680 (12%), Positives = 195/680 (28%), Gaps = 215/680 (31%)

Query: 270 KIVTKNLNKII-DVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            I++   +  + + +   V++   S +    I   +    D        F      LL+K
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-IIMSKDAVSGTLRLFWT----LLSK 74

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           Q  E +    +E                       +L+ +         + +  L   I 
Sbjct: 75  Q--EEMVQKFVE----------------------EVLRIN---------YKF--LMSPIK 99

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRD----- 443
               R   ++  M      ++  +N+ F  Y  N+   +     +  +   LL       
Sbjct: 100 TE-QRQPSMMTRMYIEQRDRLYNDNQVFAKY--NVSRLQ----PYLKLRQALLELRPAKN 152

Query: 444 -------------LVELGLWDDNMKDQL---I--VNNGSIQDIEGIPQKLKDLYKTVWEI 485
                        +         ++ ++   I  +N  +    E + + L+ L       
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL------ 206

Query: 486 PQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN 545
                  +  +  +  D S ++              +  H  +  L+     L++KP  N
Sbjct: 207 -----YQIDPNWTSRSDHSSNI-------------KLRIHSIQAELR---RLLKSKPYEN 245

Query: 546 AIQFTIDKTKMANAMASKDARSQEEIQA-DQEQAMAAMICR-----RDNK-EDCIGVQGL 598
            +   +            + ++ +   A +         C+     R  +  D +     
Sbjct: 246 CL-LVLL-----------NVQNAKAWNAFNLS-------CKILLTTRFKQVTDFLSAATT 286

Query: 599 ADLFI-QMRLPFDCNESRLLNKQIFETIYYGALEASC-EIAARDGPYQTYEGSPVSQGI- 655
             + +    +    +E     K +              +   +D P +    +P    I 
Sbjct: 287 THISLDHHSMTLTPDEV----KSLL---------LKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 656 --LQYDMWGVTPTDLWD-W-------------AALKVL--ALVYGLKLWFAIL--DSQIE 695
                D         WD W             ++L VL  A    +    ++    + I 
Sbjct: 334 AESIRDG-----LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 696 TGTPYMLYKDACNRKSNQQNLEVIEELYN--MVNKETGTRTPMISDKHYEIIMKNADR-- 751
           T    +++ D          + V+ +L+   +V K+    T  I   + E+ +K  +   
Sbjct: 389 TILLSLIWFD----VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 752 LNSAII--Y-------------DRDFNYNFFGFKYDMWGVTPTDLWD----------WAA 786
           L+ +I+  Y                  Y +    + +  +   +             +  
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF-- 502

Query: 787 LKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPY---TSNIYSRRVLS-GEF-QVVN 841
           L++KI           A   + S    L   + ++PY       Y R V +  +F   + 
Sbjct: 503 LEQKIRHDS------TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556

Query: 842 HHLLR----DLVELGLWDDN 857
            +L+     DL+ + L  ++
Sbjct: 557 ENLICSKYTDLLRIALMAED 576

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 2e-09
 Identities = 93/611 (15%), Positives = 174/611 (28%), Gaps = 182/611 (29%)

Query: 430 SGEFQVVNHHLLRDLVELGLWDDNMKD-----QLIVNNGSIQDIEGIPQKLKDLYKTVWE 484
           +GE Q     +L    +  + + + KD     + I++   I  I      +    +  W 
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 485 IPQK----------TVLD------MAADRGAFIDQSQSLNIYMAEIN--------YAKMS 520
           +  K           VL       M+  +      S    +Y+ + +        +AK +
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 521 SMHFHGWKLGLKTGMYYLRTKPAANAIQFTID------KTKMANAMASKDARSQEEIQAD 574
                   L L+  +  LR  PA N +   ID      KT +A            ++Q  
Sbjct: 131 VSRLQP-YLKLRQALLELR--PAKNVL---IDGVLGSGKTWVA-LDVCLS----YKVQCK 179

Query: 575 QEQAMAAMICRRDNKEDCIGVQGLADLFIQM------------RLPFDCNE-----SRLL 617
            +  +  +  +  N  + + ++ L  L  Q+             +    +       RLL
Sbjct: 180 MDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 618 ----------------NKQIFETIYYGALEASCEI--AARDGPYQTYEGSPVSQGI-LQY 658
                           N + +      A   SC+I    R      +  +  +  I L +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWN-----AFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 659 DMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYML------YKDACNRKSN 712
               +TP +        +L      +     L  ++ T  P  L       +D      N
Sbjct: 294 HSMTLTPDE-----VKSLLLKYLDCR--PQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 713 QQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFG-FKY 771
                     +  VN           DK   II  + + L  A        ++    F  
Sbjct: 347 ----------WKHVNC----------DKLTTIIESSLNVLEPAEYRKM---FDRLSVFPP 383

Query: 772 DMWGVTPTDLWD--WAALK----EKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
                 PT L    W  +       +     + SL+                +  +  T 
Sbjct: 384 SAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLV---------------EKQPKESTI 426

Query: 826 NIYS-----RRVLSGEFQVVNHHLLRDLVELGL---WDDNMKDQL-----------IVNN 866
           +I S     +  L  E+ +  H  + D   +      DD +   L           + N 
Sbjct: 427 SIPSIYLELKVKLENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 867 GSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA--DRGAFIDQSQSLNIYMAEI-----N 919
              + +        D     + + QK   D  A    G+ ++  Q L  Y   I      
Sbjct: 485 EHPERMTLFRMVFLDFR---F-LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 920 YAKMSS--MHF 928
           Y ++ +  + F
Sbjct: 541 YERLVNAILDF 551

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 3e-08
 Identities = 74/568 (13%), Positives = 161/568 (28%), Gaps = 142/568 (25%)

Query: 16  IFDFLELKKNTGKEEF--RARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGE 73
           +F  L  K+    ++F      + Y  ++     +  +             R    +  +
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYK-FLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 74  KFDDLY----KKYEA--EGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGK--------E 119
            F        + Y    + L+  RP    + +    G           +GK         
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKN-VLI---DGV--------LGSGKTWVALDVCL 172

Query: 120 EFRARDLFYG--LWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDL----YKKYE 173
            ++ +        W+    ++   S      M       +  +W  + D       + + 
Sbjct: 173 SYKVQCKMDFKIFWLN---LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 174 AEGKFIRQVPARKLWFA--ILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNL-CTEI 230
            + +  R + ++       +L              +  N K            NL C  +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLL-------------NVQNAK-------AWNAFNLSCKIL 269

Query: 231 VEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEA 290
           +  T++    V +  S A   +I+    +   T   +V  ++ K L+        P  E 
Sbjct: 270 L--TTRF-KQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLD--CRPQDLP-REV 322

Query: 291 RNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG 350
             +N    P  + +  +A+        +D N   +   ++   I     E+S  +     
Sbjct: 323 LTTN----PRRLSI--IAESIRDGLATWD-NWKHVNCDKLTTII-----ESSLNVLEPAE 370

Query: 351 PYQTYEGSPVSQGILQYDMWGVTPTDLWD--WAALK----EKIAKHGVRNSLLIAPMPTA 404
             + ++       +         PT L    W  +       +     + SL+       
Sbjct: 371 YRKMFD----RLSVFPPSAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLV------- 417

Query: 405 STAQILGNNESFEPYTSNIYS-----RRVLSGEFQVVNHHLLRDLVELGL---WDDNMKD 456
                    +  +  T +I S     +  L  E+ +  H  + D   +      DD +  
Sbjct: 418 --------EKQPKESTISIPSIYLELKVKLENEYAL--HRSIVDHYNIPKTFDSDDLIPP 467

Query: 457 QL-----------IVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA--DRGAFIDQ 503
            L           + N    + +        D     + + QK   D  A    G+ ++ 
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---F-LEQKIRHDSTAWNASGSILNT 523

Query: 504 SQSLNIYMAEI-----NYAKMSS--MHF 524
            Q L  Y   I      Y ++ +  + F
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDF 551

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	998
3hnc_A	792	Ribonucleoside-diphosphate reductase large subuni;	100.0
3k8t_A	888	Ribonucleoside-diphosphate reductase large chain;	100.0
2wgh_A	676	Ribonucleoside-diphosphate reductase large subunit	100.0
3o0q_A	644	Ribonucleoside-diphosphate reductase; alpha/beta b	100.0
2xap_A	761	Ribonucleoside-diphosphate reductase 1 subunit alp	100.0
1peq_A	714	Ribonucleoside-diphosphate reductase 2 alpha chain	100.0
3hnc_A	792	Ribonucleoside-diphosphate reductase large subuni;	100.0
1l1l_A	739	Ribonucleoside triphosphate reductase; 10-stranded	100.0
3k8t_A	888	Ribonucleoside-diphosphate reductase large chain;	100.0
2wgh_A	676	Ribonucleoside-diphosphate reductase large subunit	100.0
3o0q_A	644	Ribonucleoside-diphosphate reductase; alpha/beta b	100.0
1peq_A	714	Ribonucleoside-diphosphate reductase 2 alpha chain	100.0
2xap_A	761	Ribonucleoside-diphosphate reductase 1 subunit alp	100.0
1l1l_A	739	Ribonucleoside triphosphate reductase; 10-stranded	100.0
1h7b_A	605	Anaerobic ribonucleotide-triphosphate reductase la	93.23

>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A*

Probab=100.00  E-value=4.2e-128  Score=1168.01  Aligned_cols=521  Identities=69%  Similarity=1.154  Sum_probs=446.3

Q ss_pred             hhhhhHHHHHHHHhh-hcccc-ccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCcee
Q psy1689          70 SWGEKFDDLYKKYEA-EGLVY-FRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWS  147 (998)
Q Consensus        70 s~g~~F~~lY~~~E~-~~~~g-~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~  147 (998)
                      +....|.++|+.... ..++| +|+||+|+||++|||||++||++|+++|++++|++++|+||+|||+||++|++|++|+
T Consensus       270 sG~vpfmk~~d~~~~~v~QgG~~R~GA~~vyL~~wHpDI~eFl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~~v~~d~~w~  349 (792)
T 3hnc_A          270 NGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS  349 (792)
T ss_dssp             CCSHHHHHHHHHHHHHCCCC------CEEEEECTTBTTHHHHTTSCC---------CCEEEEEEECHHHHHHHHTTCEEE
T ss_pred             CCchhHHHHHHHHHHHHHhCCCccccceEEEecCCCccHHHHHHHhhccCcHhHhHhhCchhheeCHHHHHHHHcCCCEE
Confidence            456789999988864 45666 6899999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCc
Q psy1689         148 LMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLC  227 (998)
Q Consensus       148 Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC  227 (998)
                      ||+|+++|+|.++||++|+++|++++++|+.+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++||||
T Consensus       350 Lf~P~~~p~L~~~yg~ef~~~Y~~~e~~g~~~k~v~AreLw~~I~~~~~etG~P~i~f~D~~N~~~~~~~~G~I~~SNlC  429 (792)
T 3hnc_A          350 LMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLC  429 (792)
T ss_dssp             EBCTTTSTTGGGCCHHHHHHHHHHHHHTTCCSEEEEHHHHHHHHHHHHHHHSCSEEEEHHHHHHTCTTGGGCCCCCCCSS
T ss_pred             EeCcccCccHHHHhhhHHHHHHHHHHhCCCceeEeeHHHHHHHHHHHHHHhCCCeeeehhhHHhcCCCCcCCeEEEecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchH
Q psy1689         228 TEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGL  307 (998)
Q Consensus       228 ~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GL  307 (998)
                      +||+||++++++++||||||||++|+++ ++.||++.|+++|+++||+||+|||.+.||+|+++++++++|+||||+|||
T Consensus       430 ~EI~~~~~~~e~~vCNLgSiNL~~~v~~-~~~fD~~~l~~~v~~avr~Ld~vID~~~yP~~~~~~~~~~~R~IGLGvmGl  508 (792)
T 3hnc_A          430 TEIVEYTSKDEVAVCNLASLALNMYVTS-EHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGL  508 (792)
T ss_dssp             SCCCCCCBTTBCEEECEEEEEGGGGBCT-TSCBCHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEEEECH
T ss_pred             ccccCCCCCCccceeechhccHHHHhcc-cCCcCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHhchhhhhHHHH
Confidence            9999999999999999999999999974 457999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHH
Q psy1689         308 ADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI  387 (998)
Q Consensus       308 ad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i  387 (998)
                      ||+|+++|++|+|+||++++++|||.|+++|++||++||+|+|+||.|++|+|++|.|+||.|...|...++|++||++|
T Consensus       509 ad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLAkE~G~f~~f~~S~~~~G~~~~d~~~~~~~~~~dW~~Lr~~i  588 (792)
T 3hnc_A          509 ADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKI  588 (792)
T ss_dssp             HHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCTTSGGGGTCCHHHHTTCCCCTTSCHHHHHHHH
T ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccchhhccCCchhhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             HhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccc
Q psy1689         388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQD  467 (998)
Q Consensus       388 ~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~  467 (998)
                      ++||+|||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|.++|++|+++|+++|+|++++++.|+.++||||+
T Consensus       589 ~~~GlRNs~l~AiAPTgS~S~i~g~t~gIEP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~e~~~~~i~~~~Gsvq~  668 (792)
T 3hnc_A          589 AKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQS  668 (792)
T ss_dssp             HHHCCSCSCCBCCCCCHHHHHHHTCCCTTCCCSCSEEEEEETTEEEEEECHHHHHHHHHTTCCCHHHHHHHHHTTTCCTT
T ss_pred             HHhccccccccccCCcchHHHHcCCCCccCcchhHHHHHHhccCceEeeCHHHHHHHHHcCCCcHHHHHHHHhcCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCCCHHHHHHHHHHHHHcCCceEEEEeecccccccc
Q psy1689         468 IEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI  547 (998)
Q Consensus       468 ~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~  547 (998)
                      +|.+|++++++|+|||||+|++||+|+|++|||||||||+|||+++++.++|.++|++||++||||+|||||++++++++
T Consensus       669 i~~lp~~~~~~y~tA~eI~~~~~I~m~A~~Q~~IDqs~S~tl~~~~~t~~~l~~~y~~Awk~GlKt~~YY~Rs~~a~~~~  748 (792)
T 3hnc_A          669 IPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPI  748 (792)
T ss_dssp             CTTSCHHHHHHTCCTTTSCHHHHHHHHHHHHTTCSSCCCCCEECSSCCHHHHHHHHHHHHHTTCSEEESCEECC------
T ss_pred             CcCCCHHHHHHhhhHHhCCHHHHHHHHHHHcCcchhhccceeecCCCCHHHHHHHHHHHHHhCCCeEEEEecccchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHhHhhhhcccccchhhHHHHHhHHHHHHhhhhccCCcCccccccc
Q psy1689         548 QFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQG  597 (998)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~g~~G  597 (998)
                      +||+|+..++...+.+..   .   .......++++|+++|++-|+.|+|
T Consensus       749 ~~t~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~c~~c~~  792 (792)
T 3hnc_A          749 QFTLNKEKLKDKEKVSKE---E---EEKERNTAAMVCSLENRDECLMCGS  792 (792)
T ss_dssp             --------------------------------------------------
T ss_pred             hhccchhhhccccccccc---c---cccccccccccCCCCCcccccccCC
Confidence            999997665532221100   0   1112234678999999999999875

>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3rsr_A* 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*

Probab=100.00  E-value=8.7e-125  Score=1141.89  Aligned_cols=488  Identities=62%  Similarity=1.084  Sum_probs=447.0

Q ss_pred             hhhhhHHHHHHHHhh-hcccc-ccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCcee
Q psy1689          70 SWGEKFDDLYKKYEA-EGLVY-FRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWS  147 (998)
Q Consensus        70 s~g~~F~~lY~~~E~-~~~~g-~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~  147 (998)
                      +....|.++|+.... ..++| +|+||+|+||++|||||++||++|+++|+++.|++++|+||+|||+||++|++|++|+
T Consensus       270 sG~Vpfmkv~d~~~~~v~QgG~~RrGA~~vyL~vwHpDI~eFL~~K~~~g~e~~R~~~l~~sV~IpD~FMe~V~~d~~w~  349 (888)
T 3k8t_A          270 NGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWT  349 (888)
T ss_dssp             CCHHHHHHHHHHHHHHCCTTC---CCCEEEEECTTBTTHHHHTTTTCSSSCSTTCCTTEEEEEEECHHHHHHHHTTCEEE
T ss_pred             CCcccHHHHHHHHHHHHHhCCCccccceeEEecCCCchHHHHHHHhhhcCchhhhhhhCeeeeeeCHHHHHHHhcCCCEE
Confidence            456789999998864 45666 7999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCc
Q psy1689         148 LMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLC  227 (998)
Q Consensus       148 Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC  227 (998)
                      ||+|+++|+|.++||++|+++|++|+++|+. ++|+||+||++|++++|+||+|||+|+|++|++||++++|+|++||||
T Consensus       350 Lf~P~~~p~L~d~yG~eFe~~Y~~ye~~g~~-k~V~AreLw~~I~~~~~etG~P~i~f~D~iNr~n~~~~~G~I~~SNlC  428 (888)
T 3k8t_A          350 LFSPTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVIKSSNLC  428 (888)
T ss_dssp             EBCTTTSTTGGGCCHHHHHHHHHHHHHTTCS-EEEEHHHHHHHHHHHHHHHSCCEEEEHHHHHHTCTTTTTCCCCCCCTT
T ss_pred             EeccccCccHhhhhchHHHHHHHHHHhcCCe-eEEEHHHHHHHHHHHHHHhCCCeEEehhHHHhcCCCccCCeEEEeccc
Confidence            9999999999999999999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             cceecccCCCCcceeeecccccccccCCC----CCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccc
Q psy1689         228 TEIVEYTSKDEVAVCNLASIALNMYINPA----DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIG  303 (998)
Q Consensus       228 ~EI~l~~~~~~~~~CNL~SINL~~~v~~~----~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLG  303 (998)
                      +||+||++++++++|||+||||++|++++    ++.||++.|+++|+++||+||+|||.+.||+|++++.++++|+||||
T Consensus       429 ~EI~~~~~~~e~avCNLgSINL~~fv~~~~~~~~~~fD~~~l~~~v~~avR~LDnVID~n~yP~~~a~~~n~~~R~IGLG  508 (888)
T 3k8t_A          429 CEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALG  508 (888)
T ss_dssp             SCCCCCCBTTBCEEECEEEEEGGGGBC-----CCCCBCHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEE
T ss_pred             ccccCCCCCCCceEEecHHhhHHHHhccccccccccCCHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHccCCcccc
Confidence            99999999999999999999999999752    36799999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHH
Q psy1689         304 VQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAAL  383 (998)
Q Consensus       304 v~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~L  383 (998)
                      +|||||+|+++|++|+|+||++|+++||+.|+++|++||++||+|+|+||.|++|+|++|.|++|.|...|...++|++|
T Consensus       509 vmGlad~L~~lgi~Y~S~eA~~l~~~i~e~I~~~A~~AS~eLAkErG~fp~F~~S~~~~G~l~~d~~~~~p~~~~dW~~L  588 (888)
T 3k8t_A          509 VQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTL  588 (888)
T ss_dssp             EECHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCTTSGGGGTCCHHHHTTCCCCCSSCHHHH
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhccccchhhccCCchhhccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             HHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCC
Q psy1689         384 KEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNG  463 (998)
Q Consensus       384 r~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~G  463 (998)
                      |++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|.++|++|+++|+++|+|++++++.|+.++|
T Consensus       589 re~I~k~GlRNs~llAiAPTgSiS~I~g~s~sIEP~fs~~y~R~~~~G~~~vvN~~l~~~L~~~g~~~~~~~~~i~~~~G  668 (888)
T 3k8t_A          589 RKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNG  668 (888)
T ss_dssp             HHHHHHHCCSCSCCBCCCCCTTHHHHHTCCCTTCCCSCSBC---------CCBCHHHHHHHHHTTCCSHHHHHHHHTTTT
T ss_pred             HHHHHhhCcccccccCCCCchhHHHhcCCCcccCcchhhhHhhhhccCceeeeCHHHHHHHHHcCCCcHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCCCHHHHHHHHHHHHHcCCceEEEEeecccc
Q psy1689         464 SIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA  543 (998)
Q Consensus       464 sv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~  543 (998)
                      +||++|.+|++++++|+|||||+|++||+|+|++|||||||||+|||+++++.++|.++|++||++||||+|||||++++
T Consensus       669 svq~ip~lp~~~k~~f~tA~eI~~~~~I~m~A~~Q~~IDQs~S~tl~~~~~t~~dl~~~y~~Awk~GLKt~~YY~Rt~~a  748 (888)
T 3k8t_A          669 SIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAA  748 (888)
T ss_dssp             CCTTCTTSCHHHHHHTCCGGGSCHHHHHHHHHHHHTTCSSCCCCCEECSSCCHHHHHHHHHHHHHHTCSEEESCEECC--
T ss_pred             ceecCCCCCHHHHHHhhhHhhCCHHHHHHHHHHHcCcchhhccceEecCCCCHHHHHHHHHHHHHhCCCeEEEEecCcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhHhHhhh
Q psy1689         544 ANAIQFTIDKTKMAN  558 (998)
Q Consensus       544 ~~~~~~~~~~~~~~~  558 (998)
                      +++++||+|++.++.
T Consensus       749 ~~~~~~t~~~~~~~~  763 (888)
T 3k8t_A          749 SAAIQFTIDQKIADQ  763 (888)
T ss_dssp             ---------------
T ss_pred             hhhhhhcccHHHHHh
Confidence            999999999776653

>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-119  Score=1089.81  Aligned_cols=472  Identities=72%  Similarity=1.199  Sum_probs=437.2

Q ss_pred             hhhhhHHHHHHHHh-hhcccc-ccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCcee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVY-FRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWS  147 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g-~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~  147 (998)
                      +....|.++|+... ...++| +||||+|+||++|||||++||++|+++|++++|++++|+||+|||+||++|++|++|+
T Consensus       197 sG~vpfmk~~d~~~~~v~QgG~~RrGA~~~~l~~~HpDI~eFl~~K~~~g~e~~r~~~l~~sv~i~D~Fm~~v~~d~~w~  276 (676)
T 2wgh_A          197 NGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS  276 (676)
T ss_dssp             CCHHHHHHHHHHHHHHSCSTTSSCCCCEEEEECTTBTTHHHHTTTTCSSSCGGGCCTTSEEEEEECHHHHHHHHTTCEEE
T ss_pred             CCchhHHHHHHHHHHHHHhcCCccCCceeEEeCCCChhHHHHHHhhccccchhhhhhhcchhhccCHHHHHHHHcCCCeE
Confidence            45678999998886 445667 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCc
Q psy1689         148 LMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLC  227 (998)
Q Consensus       148 Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC  227 (998)
                      ||+|+++|+|.++||++|+++|.+++++|+..++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++||||
T Consensus       277 L~~P~~~~~l~~~yg~~f~~~Y~~~~~~~~~~k~v~Ar~L~~~I~~~~~etG~Pgi~f~D~~N~~~~~~~~g~I~~SNpC  356 (676)
T 2wgh_A          277 LMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLC  356 (676)
T ss_dssp             EBCTTTSTTGGGCCTHHHHHHHHHHHHTTCCSEEEEHHHHHHHHHHHHHHHSCCEEEEHHHHHHTCTTGGGCCCCCCCTT
T ss_pred             EECcccccchhhhhchHHHHHHHHHHhCCcceeEeeHHHHHHHHHHHHHHHCCCeEEechhhhhcCCCCCCCcEEecccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchH
Q psy1689         228 TEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGL  307 (998)
Q Consensus       228 ~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GL  307 (998)
                      +||+||++++++++|||+||||++|+.. ++.||++.|+++|+++||+||+|||.+.||+|++++.++++|+||||+|||
T Consensus       357 ~EI~~~~~~~e~~~CNL~SiNL~~~v~~-~~~~D~~~l~~~v~~avr~Ld~vid~~~yp~~~~~~~~~~~R~IGlGv~Gl  435 (676)
T 2wgh_A          357 TEIVEYTSKDEVAVCNLASLALNMYVTS-EHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGL  435 (676)
T ss_dssp             SCCCCCCBTTBCEEECEEEEEGGGGBCT-TSCBCHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEEEECH
T ss_pred             ccccccCCCCceeEEecccccHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCCCceecHHHH
Confidence            9999999999999999999999999963 357999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHH
Q psy1689         308 ADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI  387 (998)
Q Consensus       308 ad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i  387 (998)
                      ||+|+++|++|+|+||++++++||+.|+++|++||++||+|+|+||.|++|+|++|.|++|.|...|...++|++||++|
T Consensus       436 ad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~e~G~f~~f~~s~~~~G~~~~d~~~~~~~~~~dW~~Lr~~i  515 (676)
T 2wgh_A          436 ADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKI  515 (676)
T ss_dssp             HHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCTTSSGGGTCCHHHHTTCCCCSSSCHHHHHHHH
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccChhhccCcchhhhhcCCCchhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999888889999999999


Q ss_pred             HhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccc
Q psy1689         388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQD  467 (998)
Q Consensus       388 ~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~  467 (998)
                      ++||+|||++||||||||||+|+|+|+||||+|+++|+|++.+|+|.++|++|+++|+++|+|++++++.|+.++|+|++
T Consensus       516 ~~~G~RNs~l~aiaPTgTiS~i~g~s~gIeP~~s~~y~R~~~~g~~~~vn~~l~~~L~~~G~~~e~~~~~i~~~~Gsv~~  595 (676)
T 2wgh_A          516 AKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQS  595 (676)
T ss_dssp             HHHCCSCSCCBCCCCCTTHHHHHTCCCTTCCCCCSBC---------CCBCHHHHHHHHHHTC-------------CCCTT
T ss_pred             HHhCCccceeeeccCCcceeeecCCCCccCcccchheeEecccCceeecCHHHHHHHHHcCCChHHHHHHHHhcCCcEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCCCHHHHHHHHHHHHHcCCceEEEEeeccc
Q psy1689         468 IEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP  542 (998)
Q Consensus       468 ~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~GlKt~~yY~R~~~  542 (998)
                      +|.+|++++++|+||+||+|++||+|||++|||||||||+|||+|+++.++|.++|++||++||||++||||++.
T Consensus       596 ~p~lp~~~~~~f~tA~ei~~~~~i~~~a~~Q~~iDqsiS~tl~~~~~t~~~l~~~y~~Awk~GlKt~~yy~r~~~  670 (676)
T 2wgh_A          596 IPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRA  670 (676)
T ss_dssp             CSSSCHHHHHHTCCTTSSCHHHHHHHHHHHHTTCSSCCCCCEECSSCCHHHHHHHHHHHHHTTCSEEESCEECC-
T ss_pred             CCCCCHHHHHHhCCHhhCCHHHHHHHHHHhCCCCccccceEEecCCCCHHHHHHHHHHHHHhCCCEEEEEEEEec
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999975

>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* 1xjk_A*

Probab=100.00  E-value=2.2e-107  Score=973.03  Aligned_cols=440  Identities=23%  Similarity=0.334  Sum_probs=398.8

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhc-CCcccccccccceeeecC---HHHHHHHHcCC
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKN-TGKEEFRARDLFYGLWIP---DEFMRRVESDA  144 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~-~g~~~~r~~~l~~sV~I~---D~Fm~~v~~d~  144 (998)
                      +....|.++|+... ...++|+||||+|+||++|||||++||++|++ .|+  .|.+++|+||+||   |+||++|++|+
T Consensus       185 sG~vpfmk~~d~~~~~v~QgG~RrGA~~~yL~~~HpDI~eFl~~K~~n~g~--~~~~~~n~sv~i~~~pD~Fm~~v~~d~  262 (644)
T 3o0q_A          185 SGPVSFMHVFNSAISVVKQGSRRRGALMGILNINHPDIEEFIDAKKENTGE--AVLNFFNLSVGFPMDKKEILKLYEEDG  262 (644)
T ss_dssp             CCHHHHHHHHHHHHTTCEETTTEECCEEEEEETTSTTHHHHHTCC---------CCTTEEEEEECCSCHHHHHHHHHTTC
T ss_pred             CCcccHHHHHHHHHHHHHcCCccccceEEEecCCCcCHHHHHHHhccccCc--cceeecceeEEeCCCHHHHHHHHHcCC
Confidence            45689999999886 45677899999999999999999999999996 443  4788999999999   99999999999


Q ss_pred             ceeeeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeec
Q psy1689         145 QWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCS  224 (998)
Q Consensus       145 ~W~Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~s  224 (998)
                      +|+||+|                       +|+.+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++|
T Consensus       263 ~w~L~~P-----------------------~g~~~~~v~Ar~L~~~I~~~~~etG~Pgi~f~D~~N~~~~~~~~g~I~~S  319 (644)
T 3o0q_A          263 ELELSHP-----------------------RSTIRKKVKIRELFRKIATNAWKSGDPGLAFLGEMNKYYPLYPHRKINST  319 (644)
T ss_dssp             EEEECCT-----------------------TCCCCEEEEHHHHHHHHHHHHHHHSCCEEECHHHHHHTCTTTTTSCEEEE
T ss_pred             CeEeECC-----------------------CCceeeeecHHHHHHHHHHHHHHHCCCeEEEhhhHHhcCCCccCCceeec
Confidence            9999999                       25678999999999999999999999999999999999999999999999


Q ss_pred             CCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCcccc
Q psy1689         225 NLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGV  304 (998)
Q Consensus       225 NpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv  304 (998)
                      |||+||++++    .++|||+||||++|+.+  +.|||+.|+++|+++||+||+|||.+.||+|++++.++++|+||||+
T Consensus       320 NlC~Ei~l~~----~~~CNLgSiNL~~~v~~--~~fD~~~l~~~v~~avr~LD~VId~~~~P~~~~~~~~~~~R~IGLGv  393 (644)
T 3o0q_A          320 NPCGEIGLSD----YEACNLGSIDVAKFYNN--GFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGI  393 (644)
T ss_dssp             CTTSCCEEET----TCEEEEEEEEGGGGEET--TEECHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCEEEEE
T ss_pred             cCccccccCC----CCceEhHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHhhcCccccch
Confidence            9999999874    36999999999999973  46999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCc--cCcccccccCCCCCCHhhHHH
Q psy1689         305 QGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS--QGILQYDMWGVTPTDLWDWAA  382 (998)
Q Consensus       305 ~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~--~G~l~~d~~~~~p~~~~~W~~  382 (998)
                      |||||+|+++|++|+|+||++++++||+.|+++|++||++||+|+|+||.|++|+|+  +|.++++.+.     ..+|++
T Consensus       394 ~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~e~G~f~~f~~s~~~~~~g~~~~~~~~-----~~~W~~  468 (644)
T 3o0q_A          394 MGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGM-----SNYDDE  468 (644)
T ss_dssp             ECHHHHHHHHTCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGSHHHHSSSCCSSCCCS-----CTTHHH
T ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCchhccCCcccccccc-----cccHHH
Confidence            999999999999999999999999999999999999999999999999999999994  6777766542     468999


Q ss_pred             HHHHHH--hcCCCcccccccCCccchhhhcCCcccccccccceEEEEcc--ccc---eEEeChhHHHHHHHcCCCcHHHH
Q psy1689         383 LKEKIA--KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL--SGE---FQVVNHHLLRDLVELGLWDDNMK  455 (998)
Q Consensus       383 Lr~~i~--~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~--~G~---~~~vn~~l~~~L~~~g~~~~~~~  455 (998)
                      ||++|+  +||+|||+++|||||||||+|+|+|+||||+|+++|.|++.  +|+   |.++|++|.++|+++  |+++++
T Consensus       469 Lr~~i~~~~~G~RNs~l~aiAPTgSiS~i~g~s~gIEP~~s~~y~R~~~~~~G~~~~~~~vn~~l~~~l~~~--~~~~~~  546 (644)
T 3o0q_A          469 IREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRFVTKEDGTKEPLLYVNQVLREKLNPE--ILKRIE  546 (644)
T ss_dssp             HHHHHHHTTTCCSCSCCBCBCCCTTHHHHTTSCCTTCCCSCSEEEEC---------CEEEECHHHHHHSCHH--HHHHHH
T ss_pred             HHHHHHhcccCceehheeccCCCcchhhhcCCCCcccccccceEEEEeeccCCCccceeeeCHHHHHHHHHh--ccHHHH
Confidence            999999  99999999999999999999999999999999999999987  776   899999999999988  778888


Q ss_pred             HHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceE
Q psy1689         456 DQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTG  534 (998)
Q Consensus       456 ~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~  534 (998)
                      +.|. .+|++|++|.+|++++.+|+||+||+|++||+|||++|||||||||+|||+|+ .+.++|.++|++||++||||+
T Consensus       547 ~~i~-~~Gsv~~~~~lp~~~~~~f~tA~ei~~~~~I~m~A~~Q~~iDqs~S~tln~p~~~t~~d~~~~y~~Awk~GlK~~  625 (644)
T 3o0q_A          547 KELI-EKGSLKDIPDVPEKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGI  625 (644)
T ss_dssp             HHHH-HHSSSTTCTTSCHHHHHHSCCGGGSCHHHHHHHHHHHHTTCSSCBCCEEEECTTCCHHHHHHHHHHHHHSSCSEE
T ss_pred             HHHH-hcCCccccccCCHHHHhHcccHHhCCHHHHHHHHHHHCccccccccceeecCCCCCHHHHHHHHHHHHHhCCCEE
Confidence            8887 47999999999999999999999999999999999999999999999999984 799999999999999999999


Q ss_pred             EEEeeccccccccc
Q psy1689         535 MYYLRTKPAANAIQ  548 (998)
Q Consensus       535 ~yY~R~~~~~~~~~  548 (998)
                      |||+..++..++..
T Consensus       626 t~YR~gs~~~qvl~  639 (644)
T 3o0q_A          626 TVYRDGSLQTQVLT  639 (644)
T ss_dssp             EEEETTCC------
T ss_pred             EEECCCCccccccc
Confidence            99977777776654

>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B

Probab=100.00  E-value=4.1e-105  Score=974.58  Aligned_cols=437  Identities=28%  Similarity=0.464  Sum_probs=408.8

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++|+... ...++|+||||+|+||++|||||++||++|+++|++++|++++|+||+|||+||++|++|++|+|
T Consensus       276 sG~vpfmk~~d~~~~~v~QgG~RrGA~~vyL~~~HpDI~eFl~~K~~~g~e~~r~~~l~~~v~i~D~Fm~~v~~d~~w~L  355 (761)
T 2xap_A          276 TGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITL  355 (761)
T ss_dssp             SCHHHHHHHHHHHHTTTSTTSSSSCEEEEEEETTBTTHHHHHTTTCSSSCGGGCCTTSEEEEEECHHHHHHHHHTCEEEE
T ss_pred             CCcHHHHHHHHHHHHHHHccCCcCCceeEEecCCCchHHHHHHHhcccCcchhhhhhcccccccCHHHHHHHHcCCCeEE
Confidence            45678999998886 44677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCcchhh---chhHHHHHHHHHHcCc-ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCC-CCCCceee
Q psy1689         149 MCPNTCRGLSDSW---GEKFDDLYKKYEAEGK-FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQ-QNLGTIKC  223 (998)
Q Consensus       149 f~P~~~~~L~~~y---g~~F~~~Y~~~e~~g~-~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~-~~~g~I~~  223 (998)
                      |+|+++++|+++|   |++|+++|.++++++. .+++|+||+||++|++++|+||+|||+|+|++|++||+ ++.|+|++
T Consensus       356 f~P~~~~~l~~~~~~~~~~f~~~Y~~~~~~~~i~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~N~~~~~~~~~g~I~~  435 (761)
T 2xap_A          356 FSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQ  435 (761)
T ss_dssp             BCGGGSTTHHHHHHHCHHHHHHHHHHHHHCTTSCCEEEEHHHHHHHHHHHHHHHSCEEEEETTHHHHSSSBCTTTSCBCC
T ss_pred             ECcccccchhhccchhhHHHHHHHHHHHhCCCceeEEeeHHHHHHHHHHHHHHhCCceEEecHHHHhcCCcccccCeEEe
Confidence            9999999999999   9999999999999987 67899999999999999999999999999999999998 67899999


Q ss_pred             cCCccceecccCC--------CCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHh
Q psy1689         224 SNLCTEIVEYTSK--------DEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNM  295 (998)
Q Consensus       224 sNpC~EI~l~~~~--------~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~  295 (998)
                      ||||+||+||+.|        +++++|||+||||++|+       |++.|+++|+++||+||+|||.+.||+|++++.++
T Consensus       436 SNlC~Ei~l~~~p~~~~~~~~ge~~~CNL~SiNL~~~~-------d~~~l~~~v~~avr~Ld~vid~~~yp~~~~~~~~~  508 (761)
T 2xap_A          436 SNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAIN-------NLDELEELAILAVRALDALLDYQDYPIPAAKRGAM  508 (761)
T ss_dssp             CCTTSCCCCBCBCCSSTTCTTCBCEECEEEEEETTTCS-------SGGGHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHH
T ss_pred             ecccccccccCCcccccccccCceeecccceeeHHHhc-------CHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence            9999999999876        78889999999999994       78999999999999999999999999999999999


Q ss_pred             hcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCC--
Q psy1689         296 RHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT--  373 (998)
Q Consensus       296 ~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~--  373 (998)
                      ++|+||||+|||||+|+++|++|+|+||++++++||+.|+++|++||++||+|+|+||.|++|+|++|.++++.|...  
T Consensus       509 ~~R~IGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~eLA~E~G~~~~f~~s~~~~G~~~~d~~~~~~~  588 (761)
T 2xap_A          509 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD  588 (761)
T ss_dssp             HHCCEEEEEECHHHHHHHTTCCSTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGBSGGGTCCHHHHSCGGGG
T ss_pred             hcCccccCcccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhcCCcchhhhhhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999988642  


Q ss_pred             ----CCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCC
Q psy1689         374 ----PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL  449 (998)
Q Consensus       374 ----p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~  449 (998)
                          +...++|++||++|++||+|||++||||||||||+|+|+|+||||+|+++|.|++..|.+.++++.+.        
T Consensus       589 ~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPTgTiS~i~g~s~gIeP~~~~~~~r~~~~G~~~~~~p~~~--------  660 (761)
T 2xap_A          589 TIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYE--------  660 (761)
T ss_dssp             GTCCCCCCSCHHHHHHHHHHHCCSCSCCBCBCCCSHHHHHTTCCCTTCCCSSSEEEECCTTSCEEEECTTHH--------
T ss_pred             hhcCcchhhhHHHHHHHHHHhCcccceeeecCCCcceeeecCCCCeecccccceeeEecccCceeeeCCCHH--------
Confidence                23458999999999999999999999999999999999999999999999999999998877766541        


Q ss_pred             CcHHHHHHHhhcCCcccccCCCChhhhhhcccccCCC-hHHHHHHHHHhCCccccccceeEeecC-------CCHHHHHH
Q psy1689         450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAADRGAFIDQSQSLNIYMAE-------INYAKMSS  521 (998)
Q Consensus       450 ~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~-~~~~I~m~a~~Q~~VDqs~S~tl~l~~-------~t~~~i~~  521 (998)
                                              +++.+|+|||||+ |++||+|||++|||||||||+|||+++       .+.++|.+
T Consensus       661 ------------------------~l~~~y~ta~ei~~~~~~i~m~A~~Q~~iDqsiS~tl~~~~~~~~~~~~t~~dl~~  716 (761)
T 2xap_A          661 ------------------------HLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLK  716 (761)
T ss_dssp             ------------------------HHTTTCCCGGGCSCSHHHHHHHHHHHTTCSSCBCCCEEECGGGSGGGCEEHHHHHH
T ss_pred             ------------------------HHHHHHhHHHcccCHHHHHHHHHHHcCcccccccceEEECCcccccCCCCHHHHHH
Confidence                                    3456899999999 999999999999999999999999974       46899999


Q ss_pred             HHHHHHHcCCceEEEEeeccccccc
Q psy1689         522 MHFHGWKLGLKTGMYYLRTKPAANA  546 (998)
Q Consensus       522 ~~~~Awk~GlKt~~yY~R~~~~~~~  546 (998)
                      +|++||++|||| +||+|++.++..
T Consensus       717 ~y~~Awk~GlKT-~Yy~rsr~~~~~  740 (761)
T 2xap_A          717 DLLTAYKFGVKT-LYXQNTRDGAED  740 (761)
T ss_dssp             HHHHHHHTTCCE-ECCEEECCC---
T ss_pred             HHHHHHHcCCCE-ECCCCCcchhhh
Confidence            999999999998 899999987655

>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*

Probab=100.00  E-value=5.4e-103  Score=949.20  Aligned_cols=430  Identities=24%  Similarity=0.418  Sum_probs=381.5

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++++... ...++|+||||+|+||++|||||++||++|+++|++..|++++|+||+|||+||++|++|++|+|
T Consensus       229 sG~vpfmk~~d~~~~~v~QgG~RrGA~~vyL~~~HpDI~eFl~~K~~~gde~~r~~~l~~~v~ipD~Fm~~v~~d~~w~L  308 (714)
T 1peq_A          229 SGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMAL  308 (714)
T ss_dssp             CCSHHHHHHHHHHHHHC------CCEEEEEEETTSTTHHHHHGGGC--------CCSCEEEEECCSHHHHHHHTTCEEEE
T ss_pred             CChhHHHHHHHHHHHHHhccCccCCceeEEecCCCchHHHHHHHcccccchhhhhhhhhhhhccCHHHHHHHHcCCCeee
Confidence            44578999998875 45677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCcchhhchhH-----HHHHHHHHHcCcc-eeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCcee
Q psy1689         149 MCPNTCRGLSDSWGEKF-----DDLYKKYEAEGKF-IRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIK  222 (998)
Q Consensus       149 f~P~~~~~L~~~yg~~F-----~~~Y~~~e~~g~~-~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~  222 (998)
                      |+|.++   .++||.+|     ++.|+++++++.. +++|+||+||++|++++|+||+|||+|+|++|++||++  |+|+
T Consensus       309 f~P~~~---~~~~G~~~~~~~~~~~Y~~~~~~~~i~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~N~~~~~~--g~I~  383 (714)
T 1peq_A          309 FSPYDI---QRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMFEDTVNRANPIA--GRIN  383 (714)
T ss_dssp             ECHHHH---HHHHSSCGGGSCHHHHHHHHHHCTTSCEEEEEHHHHHHHHHHHHHHHSCCEEECHHHHHHHCCSS--SCCC
T ss_pred             eCCccc---hhhcCccccccchHHHHHHHHhCCCeeeEEeeHHHHHHHHHHHHHHhCCCeEEEhhhhhhcCCCC--Ceee
Confidence            999886   46777654     6789999988764 78999999999999999999999999999999999998  9999


Q ss_pred             ecCCccceecccCCCC------------cceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCC-cHHH
Q psy1689         223 CSNLCTEIVEYTSKDE------------VAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFY-PVEE  289 (998)
Q Consensus       223 ~sNpC~EI~l~~~~~~------------~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~-p~~e  289 (998)
                      +||||+||+|+++|++            .++|||+||||++|++       ++.|+++|+++||+||+|||.+.| |+|+
T Consensus       384 ~SNlC~EI~~~~~p~~~~~~~~~~~~G~~~~CNL~SiNL~~~v~-------~~~l~~~v~~avr~Ld~Vid~~~~~~~p~  456 (714)
T 1peq_A          384 MSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHVMD-------SPDIGRTVETAIRGLTAVSDMSHIRSVPS  456 (714)
T ss_dssp             CCCTTSCCCCCCCCCEECTTSCEEECCCCEECEEEEEEHHHHHT-------CSCHHHHHHHHHHHHHHHHHTCCCTTCHH
T ss_pred             ecCcccceeccCCcccccccccccccCCcCcccchhhhHHHhcC-------HHHHHHHHHHHHHHHHHHHhhhccCCCHH
Confidence            9999999999986642            3799999999999985       357999999999999999999776 7999


Q ss_pred             HHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCcCccCccccc
Q psy1689         290 ARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYD  368 (998)
Q Consensus       290 ~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G-~f~~f~~S~~~~G~l~~d  368 (998)
                      ++++++++|+||||+|||||+|+++|++|+|+||++++++||+.|+++|++||++||+|+| +||.|++|+|++|.+ |+
T Consensus       457 ~~~~~~~~R~IGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~E~G~~f~~f~~s~~~~G~~-f~  535 (714)
T 1peq_A          457 IAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDY-FT  535 (714)
T ss_dssp             HHHHHHHHCCEEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTGGGSHHHHSHH-HH
T ss_pred             HHHHHHhcCCeEEeHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccChhhccch-hh
Confidence            9999999999999999999999999999999999999999999999999999999999999 999999999999987 55


Q ss_pred             cc-------------------CCCCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEcc
Q psy1689         369 MW-------------------GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL  429 (998)
Q Consensus       369 ~~-------------------~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~  429 (998)
                      .|                   ...+...++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|+|++.
T Consensus       536 ~~~~~~~~p~~~~v~~l~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPTgTiS~i~g~S~gIeP~~s~~~~r~~~  615 (714)
T 1peq_A          536 QYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEG  615 (714)
T ss_dssp             HHHSSCCSCSSHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHCCSCSCCBCBCCCCTHHHHHTCCSSSSCCSCSEEEECCS
T ss_pred             hccccccCcccHHHHHHhhhcCCCCcchhhHHHHHHHHHHhCCchhheeeecCCCcchhhcCCCCcccccccceeEEecc
Confidence            33                   12233578999999999999999999999999999999999999999999999999998


Q ss_pred             c-cceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCcccccccee
Q psy1689         430 S-GEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN  508 (998)
Q Consensus       430 ~-G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~t  508 (998)
                      + |++.++|+                               .+|++.+++|+|||||+|++||+|+|++|||||||||+|
T Consensus       616 ~~g~~~~~~p-------------------------------~l~~~~~~~y~tA~ei~~~~~i~m~A~~Q~~iDqsiS~t  664 (714)
T 1peq_A          616 KTGRVYYPAP-------------------------------FMTNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLT  664 (714)
T ss_dssp             TTSCEEEECT-------------------------------TCCTTSGGGCCCHHHHCHHHHHHHHHHHHTTCSSCBCCC
T ss_pred             cCCcEEEeCC-------------------------------ccchhhHhhhCcHhhCCHHHHHHHHHHHcCcccccccce
Confidence            7 88877764                               345667789999999999999999999999999999999


Q ss_pred             EeecC-CCHHHHHHHHHHHHHcCCceEEEEeeccccc
Q psy1689         509 IYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAA  544 (998)
Q Consensus       509 l~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~  544 (998)
                      ||+|+ .+.++|.++|++||++|||| +||+|+++.+
T Consensus       665 l~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~rs~~~~  700 (714)
T 1peq_A          665 LFFPDTATTRDINKAQIYAWRKGIKS-LYYIRLRQLA  700 (714)
T ss_dssp             EEECTTCCHHHHHHHHHHHHHHTCCE-ECCEEECCC-
T ss_pred             EEeCCCCCHHHHHHHHHHHHHhCCCE-EEEccccccc
Confidence            99997 59999999999999999999 8999999654

>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A*

Probab=100.00  E-value=1.2e-71  Score=674.82  Aligned_cols=294  Identities=71%  Similarity=1.150  Sum_probs=239.2

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ..+|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.+|||+|++++
T Consensus       496 ~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLAkE~G~f~~f~~S~~~~G~~~~d~~~~~~  575 (792)
T 3hnc_A          496 KRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP  575 (792)
T ss_dssp             HHHCCCEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCTTSGGGGTCCHHHHTTCCC
T ss_pred             HHhchhhhhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccchhhccCCc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999886432


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                                                                                                      
T Consensus       576 --------------------------------------------------------------------------------  575 (792)
T 3hnc_A          576 --------------------------------------------------------------------------------  575 (792)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                                       ...++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus       576 ---------------------------------~~~~dW~~Lr~~i~~~GlRNs~l~AiAPTgS~S~i~g~t~gIEP~~s  622 (792)
T 3hnc_A          576 ---------------------------------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTS  622 (792)
T ss_dssp             ---------------------------------CTTSCHHHHHHHHHHHCCSCSCCBCCCCCHHHHHHHTCCCTTCCCSC
T ss_pred             ---------------------------------hhhhhHHHHHHHHHHhccccccccccCCcchHHHHcCCCCccCcchh
Confidence                                             13468999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689         826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI  905 (998)
Q Consensus       826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i  905 (998)
                      ++|+|++.+|+|.++|++|+++|+++|+|+++++++|+.++||||+++.||++++++|+|||||+|++||+|||++||||
T Consensus       623 ~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~e~~~~~i~~~~Gsvq~i~~lp~~~~~~y~tA~eI~~~~~I~m~A~~Q~~I  702 (792)
T 3hnc_A          623 NIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFI  702 (792)
T ss_dssp             SEEEEEETTEEEEEECHHHHHHHHHTTCCCHHHHHHHHHTTTCCTTCTTSCHHHHHHTCCTTTSCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhccCceEeeCHHHHHHHHHcCCCcHHHHHHHHhcCCCcccCcCCCHHHHHHhhhHHhCCHHHHHHHHHHHcCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceeecCCCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhhhhhhhcccCCCccchhhhhhhHHHHhhc
Q psy1689         906 DQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAA  985 (998)
Q Consensus       906 DqsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  985 (998)
                      |||||+|||||+++.+||.++|++|||+||||+|||+|+++++++++||+++...... .....   .+.  ......++
T Consensus       703 Dqs~S~tl~~~~~t~~~l~~~y~~Awk~GlKt~~YY~Rs~~a~~~~~~t~~~~~~~~~-~~~~~---~~~--~~~~~~~~  776 (792)
T 3hnc_A          703 DQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDK-EKVSK---EEE--EKERNTAA  776 (792)
T ss_dssp             SSCCCCCEECSSCCHHHHHHHHHHHHHTTCSEEESCEECC----------------------------------------
T ss_pred             hhhccceeecCCCCHHHHHHHHHHHHHhCCCeEEEEecccchhhhhhhccchhhhccc-ccccc---ccc--cccccccc
Confidence            9999999999999999999999999999999999999999999999999995543321 11000   000  11223577


Q ss_pred             ccccCCCcccccC
Q psy1689         986 MICRRDNKEDCLK  998 (998)
Q Consensus       986 ~~~~~~~~~~~~~  998 (998)
                      +.|+++|+|+|+.
T Consensus       777 ~~~~~~~~~~c~~  789 (792)
T 3hnc_A          777 MVCSLENRDECLM  789 (792)
T ss_dssp             -------------
T ss_pred             ccCCCCCcccccc
Confidence            9999999999974

>1l1l_A Ribonucleoside triphosphate reductase; 10-stranded alpha-beta barrel, central finger loop, oxidoreductase; 1.75A {Lactobacillus leichmannii} SCOP: c.7.1.4

Probab=100.00  E-value=4e-71  Score=672.75  Aligned_cols=372  Identities=16%  Similarity=0.152  Sum_probs=302.8

Q ss_pred             hhhhhHHHHHHHH-------------------------hhhccccccccceEEEecCCcccHHHHHHhhhcCCccccccc
Q psy1689          70 SWGEKFDDLYKKY-------------------------EAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRAR  124 (998)
Q Consensus        70 s~g~~F~~lY~~~-------------------------E~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~  124 (998)
                      +....|.++|+..                         ....++|+||||.|+||   ||||++||++|+++|+....-+
T Consensus       272 sG~vpf~k~~~~~~~i~~~~~g~~l~~~d~~di~~~i~~~V~QGG~RrGA~m~~l---~pDi~eFi~~K~~~g~~~~~~~  348 (739)
T 1l1l_A          272 SGPMPLISMLLDVNEVLNNKAGGRLTAVDAADICNLIGKAVVAGNVRRSAELALG---SNDDQDFISMKQDQEKLMHHRW  348 (739)
T ss_dssp             CCSHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHTTC----CEEEEE---ETTCHHHHHGGGCHHHHHHTGG
T ss_pred             CCcHHHHHHHHHHHHHhhhhcccccccchhhhhhHHHHHHHhcCCccccceEEEE---CccHHHHHHhCcccchhhcccc
Confidence            4567788888664                         23456789999999996   6999999999998875432222


Q ss_pred             ccceeeecCHHHHHHHHcCCceeeeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeE
Q psy1689         125 DLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYML  204 (998)
Q Consensus       125 ~l~~sV~I~D~Fm~~v~~d~~W~Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~  204 (998)
                      .+|+||+|||+||                                                 +|++|++++|+||+|||+
T Consensus       349 ~~n~Sv~v~D~Fm-------------------------------------------------~~~~I~~~~~etGePgi~  379 (739)
T 1l1l_A          349 ASNNSVAVDSAFS-------------------------------------------------GYQPIAAGIRENGEPGIV  379 (739)
T ss_dssp             GEEEEEEECTTCC-------------------------------------------------CHHHHHHHHHHHSCCEEE
T ss_pred             ccCceeeeCHHHH-------------------------------------------------HHHHHHHHHHHcCCCeeE
Confidence            3799999999998                                                 188999999999999999


Q ss_pred             ehhhhhhh------CCCCCCCceeecCCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHH
Q psy1689         205 YKDACNRK------SNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNK  278 (998)
Q Consensus       205 f~D~~Nr~------~~~~~~g~I~~sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~  278 (998)
                      |+|++|++      +|+++.|+|++||||+||+|++.    ++|||+|||  .|+.   +.||++ |+++|+++||+||+
T Consensus       380 f~D~~N~~~~~~~~~~~~~~g~I~~SNpC~EI~l~~~----~~CNL~Sin--~~v~---~~~d~~-l~~~v~~avr~Ldn  449 (739)
T 1l1l_A          380 NLDLSKNYGRIVDGYQAGIDGDVEGTNPCGEISLANG----EPCNLFEVF--PLIA---EEQGWD-LQEVFALAARYAKR  449 (739)
T ss_dssp             EHHHHHHCSSGGGCCCTTTTTTEEEECTTCCSEEETT----CBCCEEEEC--HHHH---HHTTCC-HHHHHHHHHHHHHH
T ss_pred             echhhhccccccccCCcccCccEEecCcceeeecccC----Cccchhhhh--hhcc---ccccHH-HHHHHHHHHHHHHh
Confidence            99999997      46678999999999999999853    689999999  5653   247887 99999999999999


Q ss_pred             hhhcCCCcHHHHHHHHhhcCCCccccchHHHHHH-HcCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy1689         279 IIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI-QMRLPF----DCNESRLLNKQIFETIYYGALEASCEIAARDGPYQ  353 (998)
Q Consensus       279 vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~-~lgl~Y----~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~  353 (998)
                      | |++.||+|++++.++++|+||||+|||||+|+ ++|++|    +|.+|.                   +| +|+|+++
T Consensus       450 V-d~~~yp~~~~~~~~~~~R~IGlGv~Glad~L~~~~gi~Y~~~y~s~~a~-------------------el-~e~g~~~  508 (739)
T 1l1l_A          450 V-TFSPYDWEISREIIQKNRRIGISMSGIQDWLLTRLGNRVVTGFKDDFDP-------------------ET-HEAIKVP  508 (739)
T ss_dssp             H-TTSCCSCHHHHHHHHHHCCCEEEECSHHHHHHHHHSSCSEEEEEEEECT-------------------TT-CCEEEEE
T ss_pred             h-hhccCCcHHHHHHHHhCCccccccccHHHHHHHHhCCCccccccCHHHH-------------------HH-hhhcCcc
Confidence            9 99999999999999999999999999999999 899997    333222                   12 2445555


Q ss_pred             CCCCCc--CccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcc-cccccCCccchhhhcCCcccccccccceEEEEccc
Q psy1689         354 TYEGSP--VSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNS-LLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLS  430 (998)
Q Consensus       354 ~f~~S~--~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs-~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~  430 (998)
                      .|+++.  +.++.+..       ....+|+.    +++||+||+ ++||||||||||+|+|+|+||||+|+++|.|++  
T Consensus       509 ~~~~~~~~~~~~~~~~-------~~~~~w~~----~~~~G~rns~~ltaIAPTgTiS~i~g~S~GIEP~~a~~~~rr~--  575 (739)
T 1l1l_A          509 VYDKRAIKMVDQLYKA-------VVKADQDY----SKTLGCNESIKHTTVKPSGTVAKLAGASEGMHFHYGAYLIQRI--  575 (739)
T ss_dssp             EECHHHHHHHHHHHHH-------HHHHHHHH----HHHHTCCCCSCCEEBCCCHHHHHHHTCCCTTCCBSCSEEEEEE--
T ss_pred             ccCHHHHHHHHHHHHH-------HHHHHHHH----HHHhCCCChhheEEECCCccHHHhcCCCCcccccceeeEEEEe--
Confidence            444210  01111100       01235654    778999998 999999999999999999999999999999987  


Q ss_pred             cceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCC-CChhhhhhcccccCCChHHHHHHHHHhCC-cccccccee
Q psy1689         431 GEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEG-IPQKLKDLYKTVWEIPQKTVLDMAADRGA-FIDQSQSLN  508 (998)
Q Consensus       431 G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~-lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~-~VDqs~S~t  508 (998)
                       +|.++|++ +++|+++|||+++   .+..++|+|+++|. .|++.+.+|+||+||+|++||+|||++|+ |||||||+|
T Consensus       576 -~~~~~n~~-~~~l~~~g~~~~~---~i~~~~g~v~~ip~~~~~~~~~~f~tA~eI~~~~~i~~~A~~Q~~wiDqsiS~T  650 (739)
T 1l1l_A          576 -RFQDSDPL-LPALKACGYRTEA---DIYTENTTCVEFPIKAVGADNPNFASAGTVSIAEQFATQAFLQTYWSDNAVSCT  650 (739)
T ss_dssp             -EEETTCTH-HHHHHHTTCEEEE---CSSSTTEEEEEEEEECTTTTCTTCCBTTTSCHHHHHHHHHHHHHHTCSSCBCCE
T ss_pred             -eecccchH-HHHHHHcCCCchH---HHhhcCCceeeccccCchhhhhhcccHHhCCHHHHHHHHHHhccccccccccee
Confidence             47788886 5999999999875   44567899999886 57788899999999999999999999999 699999999


Q ss_pred             EeecCCCHHHHHHHHHHHHHcCCceEEEEeeccccc
Q psy1689         509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA  544 (998)
Q Consensus       509 l~l~~~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~  544 (998)
                      ||+++...++|.++ ++||+.|||| +||+|...++
T Consensus       651 i~~~~~~~~~l~~l-~~awk~GlK~-~yylR~~~~t  684 (739)
T 1l1l_A          651 ITFQDSEGDQVESL-LRQYRFITKS-TSLLPYFGGS  684 (739)
T ss_dssp             EEECGGGGGGHHHH-HHHTTTTCSE-EEEEECCCCC
T ss_pred             EEeCCchHHHHHHH-HHHHHhCCcE-EEEecCCCcc
Confidence            99997667899998 6799999998 7888877654

>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3rsr_A* 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*

Probab=100.00  E-value=2.3e-68  Score=648.11  Aligned_cols=260  Identities=65%  Similarity=1.107  Sum_probs=229.9

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ...|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.||||+|+.++
T Consensus       500 ~~~R~IGLGvmGlad~L~~lgi~Y~S~eA~~l~~~i~e~I~~~A~~AS~eLAkErG~fp~F~~S~~~~G~l~~d~~~~~p  579 (888)
T 3k8t_A          500 MRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKP  579 (888)
T ss_dssp             HHHCCCEEEEECHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCTTSGGGGTCCHHHHTTCCC
T ss_pred             HccCCccccHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhccccchhhccCCc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999886432


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                                                                                                      
T Consensus       580 --------------------------------------------------------------------------------  579 (888)
T 3k8t_A          580 --------------------------------------------------------------------------------  579 (888)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                                       ...++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus       580 ---------------------------------~~~~dW~~Lre~I~k~GlRNs~llAiAPTgSiS~I~g~s~sIEP~fs  626 (888)
T 3k8t_A          580 ---------------------------------YGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTS  626 (888)
T ss_dssp             ---------------------------------CCSSCHHHHHHHHHHHCCSCSCCBCCCCCTTHHHHHTCCCTTCCCSC
T ss_pred             ---------------------------------hhhccHHHHHHHHHhhCcccccccCCCCchhHHHhcCCCcccCcchh
Confidence                                             12468999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689         826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI  905 (998)
Q Consensus       826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i  905 (998)
                      |+|+|++.+|+|.++|++|+++|+++|+|++++++.|+.++||||+++.+|++++++|+|||||+|++||+|||++||||
T Consensus       627 ~~y~R~~~~G~~~vvN~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~ip~lp~~~k~~f~tA~eI~~~~~I~m~A~~Q~~I  706 (888)
T 3k8t_A          627 NMYSRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYI  706 (888)
T ss_dssp             SBC---------CCBCHHHHHHHHHTTCCSHHHHHHHHTTTTCCTTCTTSCHHHHHHTCCGGGSCHHHHHHHHHHHHTTC
T ss_pred             hhHhhhhccCceeeeCHHHHHHHHHcCCCcHHHHHHHHhcCCceecCCCCCHHHHHHhhhHhhCCHHHHHHHHHHHcCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceeecCCCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhhh
Q psy1689         906 DQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT  958 (998)
Q Consensus       906 DqsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~~  958 (998)
                      |||||+|||+|+++.+||.++|++|||+||||+|||+|+++++++++||+++.
T Consensus       707 DQs~S~tl~~~~~t~~dl~~~y~~Awk~GLKt~~YY~Rt~~a~~~~~~t~~~~  759 (888)
T 3k8t_A          707 DQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQK  759 (888)
T ss_dssp             SSCCCCCEECSSCCHHHHHHHHHHHHHHTCSEEESCEECC-------------
T ss_pred             hhhccceEecCCCCHHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhhcccHH
Confidence            99999999999999999999999999999999999999999999999999964

>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.1e-63  Score=598.56  Aligned_cols=248  Identities=76%  Similarity=1.211  Sum_probs=215.9

Q ss_pred             CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCCc
Q psy1689         587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT  666 (998)
Q Consensus       587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~~  666 (998)
                      .+|+||||+|||||+|+++|+||+|+||++|+++|||+|+++|+++|++||+|+|+||.|++|+|++|.||||+|.+++ 
T Consensus       424 ~~R~IGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~e~G~f~~f~~s~~~~G~~~~d~~~~~~-  502 (676)
T 2wgh_A          424 RHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP-  502 (676)
T ss_dssp             HHCCCEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCTTSSGGGTCCHHHHTTCCC-
T ss_pred             cCCCceecHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccChhhccCcchhhhhcCC-
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999875422 


Q ss_pred             cchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHHH
Q psy1689         667 DLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM  746 (998)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  746 (998)
                                                                                                      
T Consensus       503 --------------------------------------------------------------------------------  502 (676)
T 2wgh_A          503 --------------------------------------------------------------------------------  502 (676)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccccccc
Q psy1689         747 KNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN  826 (998)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a~  826 (998)
                                                      .+.++|++||++|++||+|||+++|||||||||+|+|+|+||||+|++
T Consensus       503 --------------------------------~~~~dW~~Lr~~i~~~G~RNs~l~aiaPTgTiS~i~g~s~gIeP~~s~  550 (676)
T 2wgh_A          503 --------------------------------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSN  550 (676)
T ss_dssp             --------------------------------CSSSCHHHHHHHHHHHCCSCSCCBCCCCCTTHHHHHTCCCTTCCCCCS
T ss_pred             --------------------------------CchhhHHHHHHHHHHhCCccceeeeccCCcceeeecCCCCccCcccch
Confidence                                            134689999999999999999999999999999999999999999999


Q ss_pred             eEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCccc
Q psy1689         827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFID  906 (998)
Q Consensus       827 ~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~iD  906 (998)
                      +|+|++.+|+|+++|++|+++|+++|+|+++++++|+.++||||+++.+|++++++|+|||||+|++||+|||++|||||
T Consensus       551 ~y~R~~~~g~~~~vn~~l~~~L~~~G~~~e~~~~~i~~~~Gsv~~~p~lp~~~~~~f~tA~ei~~~~~i~~~a~~Q~~iD  630 (676)
T 2wgh_A          551 IYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFID  630 (676)
T ss_dssp             BC---------CCBCHHHHHHHHHHTC-------------CCCTTCSSSCHHHHHHTCCTTSSCHHHHHHHHHHHHTTCS
T ss_pred             heeEecccCceeecCHHHHHHHHHcCCChHHHHHHHHhcCCcEecCCCCCHHHHHHhCCHhhCCHHHHHHHHHHhCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeecCCCCHHHHHHHHHHHHHcCCcEEEEEecCCcc
Q psy1689         907 QSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA  947 (998)
Q Consensus       907 qsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~  947 (998)
                      ||||+|||+|+.+.+||.++|++|||+||||++||||++.-
T Consensus       631 qsiS~tl~~~~~t~~~l~~~y~~Awk~GlKt~~yy~r~~~~  671 (676)
T 2wgh_A          631 QSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRAH  671 (676)
T ss_dssp             SCCCCCEECSSCCHHHHHHHHHHHHHTTCSEEESCEECC--
T ss_pred             cccceEEecCCCCHHHHHHHHHHHHHhCCCEEEEEEEEecc
Confidence            99999999999999999999999999999999999998753

>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* 1xjk_A*

Probab=100.00  E-value=2e-62  Score=585.83  Aligned_cols=245  Identities=21%  Similarity=0.313  Sum_probs=221.4

Q ss_pred             CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccC--cCcccccccCCC
Q psy1689         587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS--QGILQYDMWGVT  664 (998)
Q Consensus       587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~--~g~l~~d~~~~~  664 (998)
                      .+|+||||+|||||+|++|||||+|+||++|+++|||+|+++|+++|++||+|+|+||.|++|+|+  +|.+|+|.|   
T Consensus       385 ~~R~IGLGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~e~G~f~~f~~s~~~~~~g~~~~~~~---  461 (644)
T 3o0q_A          385 ESRRLGLGIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMG---  461 (644)
T ss_dssp             HHCCEEEEEECHHHHHHHHTCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGSHHHHSSSCCSSCCC---
T ss_pred             hcCccccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCchhccCCccccccc---
Confidence            578999999999999999999999999999999999999999999999999999999999999995  455554321   


Q ss_pred             CccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHH
Q psy1689         665 PTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEI  744 (998)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  744 (998)
                                                                                                      
T Consensus       462 --------------------------------------------------------------------------------  461 (644)
T 3o0q_A          462 --------------------------------------------------------------------------------  461 (644)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHH--hhcccccceecCCCCcchhhhcCCCccccc
Q psy1689         745 IMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIA--KHGVRNSLLIAPMPTASTAQILGNNESFEP  822 (998)
Q Consensus       745 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~--~~G~RNs~~~aiAPTgSiS~i~g~s~giEP  822 (998)
                                                         ...+|++||+.|+  +||+|||+++|||||||||+|+|||+||||
T Consensus       462 -----------------------------------~~~~W~~Lr~~i~~~~~G~RNs~l~aiAPTgSiS~i~g~s~gIEP  506 (644)
T 3o0q_A          462 -----------------------------------MSNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEP  506 (644)
T ss_dssp             -----------------------------------SCTTHHHHHHHHHHTTTCCSCSCCBCBCCCTTHHHHTTSCCTTCC
T ss_pred             -----------------------------------ccccHHHHHHHHHhcccCceehheeccCCCcchhhhcCCCCcccc
Confidence                                               1357999999999  999999999999999999999999999999


Q ss_pred             cccceEEEEcc--ccc---eEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHH
Q psy1689         823 YTSNIYSRRVL--SGE---FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM  897 (998)
Q Consensus       823 ~~a~~~~r~~~--~G~---~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m  897 (998)
                      +|+++|+|+++  +|+   |.++|++|+++|+++  |++++++.|+ .+||||+++.||++++++|+||+||+|++||+|
T Consensus       507 ~~s~~y~R~~~~~~G~~~~~~~vn~~l~~~l~~~--~~~~~~~~i~-~~Gsv~~~~~lp~~~~~~f~tA~ei~~~~~I~m  583 (644)
T 3o0q_A          507 NFLLAYTRFVTKEDGTKEPLLYVNQVLREKLNPE--ILKRIEKELI-EKGSLKDIPDVPEKIKKVFVVALDIDPMDHLLM  583 (644)
T ss_dssp             CSCSEEEEC---------CEEEECHHHHHHSCHH--HHHHHHHHHH-HHSSSTTCTTSCHHHHHHSCCGGGSCHHHHHHH
T ss_pred             cccceEEEEeeccCCCccceeeeCHHHHHHHHHh--ccHHHHHHHH-hcCCccccccCCHHHHhHcccHHhCCHHHHHHH
Confidence            99999999998  776   999999999999988  8889998887 579999999999999999999999999999999


Q ss_pred             HHHhCCcccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchh
Q psy1689         898 AADRGAFIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ  952 (998)
Q Consensus       898 ~a~~Q~~iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~  952 (998)
                      ||++|||||||||+|||+| ++|++||.++|++||++||||+||||++++..|++.
T Consensus       584 ~A~~Q~~iDqs~S~tln~p~~~t~~d~~~~y~~Awk~GlK~~t~YR~gs~~~qvl~  639 (644)
T 3o0q_A          584 QDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITVYRDGSLQTQVLT  639 (644)
T ss_dssp             HHHHHTTCSSCBCCEEEECTTCCHHHHHHHHHHHHHSSCSEEEEEETTCC------
T ss_pred             HHHHCccccccccceeecCCCCCHHHHHHHHHHHHHhCCCEEEEECCCCccccccc
Confidence            9999999999999999999 899999999999999999999999999999999986

>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*

Probab=100.00  E-value=1.1e-53  Score=518.26  Aligned_cols=235  Identities=21%  Similarity=0.387  Sum_probs=202.5

Q ss_pred             CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCccCcCcccccccCCCC
Q psy1689         587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G-~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      .+|+||||+|||||+|+++|+||+|+||++|+++|||+|+|+|+++|++||+|+| +||.|++|+|++|.+ ||+|... 
T Consensus       463 ~~R~IGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~E~G~~f~~f~~s~~~~G~~-f~~~~~~-  540 (714)
T 1peq_A          463 ASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDY-FTQYLQD-  540 (714)
T ss_dssp             HHCCEEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTGGGSHHHHSHH-HHHHHSS-
T ss_pred             hcCCeEEeHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccChhhccch-hhhcccc-
Confidence            5789999999999999999999999999999999999999999999999999999 999999999999998 7764210 


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                          +|.                          |.               .+.+.++++.    .|              
T Consensus       541 ----~~~--------------------------p~---------------~~~v~~l~~~----~~--------------  557 (714)
T 1peq_A          541 ----DWQ--------------------------PK---------------TAKVRALFAR----SG--------------  557 (714)
T ss_dssp             ----CCS--------------------------CS---------------SHHHHHHHHH----HT--------------
T ss_pred             ----ccC--------------------------cc---------------cHHHHHHhhh----cC--------------
Confidence                010                          10               0111122110    00              


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                                                    +.....++|++||++|++||+|||+++|||||||||+|+|||+||||+|+
T Consensus       558 ------------------------------~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPTgTiS~i~g~S~gIeP~~s  607 (714)
T 1peq_A          558 ------------------------------ITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVA  607 (714)
T ss_dssp             ------------------------------CCCCCHHHHHHHHHHHHHHCCSCSCCBCBCCCCTHHHHHTCCSSSSCCSC
T ss_pred             ------------------------------CCCcchhhHHHHHHHHHHhCCchhheeeecCCCcchhhcCCCCccccccc
Confidence                                          11125789999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccc-cceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCc
Q psy1689         826 NIYSRRVLS-GEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF  904 (998)
Q Consensus       826 ~~~~r~~~~-G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~  904 (998)
                      ++|+|++.. |+|.++||+                               +|++++++|+|||||+|++||+|||++|||
T Consensus       608 ~~~~r~~~~~g~~~~~~p~-------------------------------l~~~~~~~y~tA~ei~~~~~i~m~A~~Q~~  656 (714)
T 1peq_A          608 KIEIRKEGKTGRVYYPAPF-------------------------------MTNENLDMYQDAYDIGPEKIIDTYAEATRH  656 (714)
T ss_dssp             SEEEECCSTTSCEEEECTT-------------------------------CCTTSGGGCCCHHHHCHHHHHHHHHHHHTT
T ss_pred             ceeEEecccCCcEEEeCCc-------------------------------cchhhHhhhCcHhhCCHHHHHHHHHHHcCc
Confidence            999999998 998877665                               455678999999999999999999999999


Q ss_pred             ccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccc
Q psy1689         905 IDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA  948 (998)
Q Consensus       905 iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~  948 (998)
                      ||||||+|||+| +++.+||.++|++||++|||| +||+|+++.+
T Consensus       657 iDqsiS~tl~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~rs~~~~  700 (714)
T 1peq_A          657 VDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS-LYYIRLRQLA  700 (714)
T ss_dssp             CSSCBCCCEEECTTCCHHHHHHHHHHHHHHTCCE-ECCEEECCC-
T ss_pred             ccccccceEEeCCCCCHHHHHHHHHHHHHhCCCE-EEEccccccc
Confidence            999999999999 679999999999999999999 7999988654

>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B

Probab=100.00  E-value=4.7e-53  Score=516.27  Aligned_cols=225  Identities=27%  Similarity=0.419  Sum_probs=201.4

Q ss_pred             cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689         586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      ..+|+||||+|||||+|+++||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.+|+|.|....
T Consensus       508 ~~~R~IGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~eLA~E~G~~~~f~~s~~~~G~~~~d~~~~~~  587 (761)
T 2xap_A          508 MGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDL  587 (761)
T ss_dssp             HHHCCEEEEEECHHHHHHHTTCCSTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGBSGGGTCCHHHHSCGGG
T ss_pred             HhcCccccCcccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhcCCcchhhhhhhh
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999875321


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                      ..                                                                              
T Consensus       588 ~~------------------------------------------------------------------------------  589 (761)
T 2xap_A          588 DT------------------------------------------------------------------------------  589 (761)
T ss_dssp             GG------------------------------------------------------------------------------
T ss_pred             hh------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                            +                       .++...++|++||+.|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus       590 ------~-----------------------~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPTgTiS~i~g~s~gIeP~~~  640 (761)
T 2xap_A          590 ------I-----------------------ANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG  640 (761)
T ss_dssp             ------T-----------------------CCCCCCSCHHHHHHHHHHHCCSCSCCBCBCCCSHHHHHTTCCCTTCCCSS
T ss_pred             ------h-----------------------cCcchhhhHHHHHHHHHHhCcccceeeecCCCcceeeecCCCCeeccccc
Confidence                  0                       00113479999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCC-hHhHHHHHHHhCCc
Q psy1689         826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAADRGAF  904 (998)
Q Consensus       826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~-~~~~I~m~a~~Q~~  904 (998)
                      ++|+|+...|++..++|.+.                                +++++|+|||||+ |++||+|||++|||
T Consensus       641 ~~~~r~~~~G~~~~~~p~~~--------------------------------~l~~~y~ta~ei~~~~~~i~m~A~~Q~~  688 (761)
T 2xap_A          641 YVSIKASKDGILRQVVPDYE--------------------------------HLHDAYELLWEMPGNDGYLQLVGIMQKF  688 (761)
T ss_dssp             SEEEECCTTSCEEEECTTHH--------------------------------HHTTTCCCGGGCSCSHHHHHHHHHHHTT
T ss_pred             ceeeEecccCceeeeCCCHH--------------------------------HHHHHHhHHHcccCHHHHHHHHHHHcCc
Confidence            99999999999988887752                                2467899999999 99999999999999


Q ss_pred             ccccccceeecCC-------CCHHHHHHHHHHHHHcCCcEEEEEecCCccccc
Q psy1689         905 IDQSQSLNIYMAE-------INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA  950 (998)
Q Consensus       905 iDqsiS~tl~~~~-------~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~  950 (998)
                      ||||||+|||+|+       +|.+||.++|++|||+|||| +||+|+++++..
T Consensus       689 iDqsiS~tl~~~~~~~~~~~~t~~dl~~~y~~Awk~GlKT-~Yy~rsr~~~~~  740 (761)
T 2xap_A          689 IDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYXQNTRDGAED  740 (761)
T ss_dssp             CSSCBCCCEEECGGGSGGGCEEHHHHHHHHHHHHHTTCCE-ECCEEECCC---
T ss_pred             ccccccceEEECCcccccCCCCHHHHHHHHHHHHHcCCCE-ECCCCCcchhhh
Confidence            9999999999962       68999999999999999998 899998877644

>1l1l_A Ribonucleoside triphosphate reductase; 10-stranded alpha-beta barrel, central finger loop, oxidoreductase; 1.75A {Lactobacillus leichmannii} SCOP: c.7.1.4

Probab=100.00  E-value=8.2e-39  Score=389.40  Aligned_cols=153  Identities=14%  Similarity=0.116  Sum_probs=134.9

Q ss_pred             hhHHHHHHHHHhhccccc-ceecCCCCcchhhhcCCCccccccccceEEEEccccceEEechhHHHHHHHcCCChHHHHH
Q psy1689         782 WDWAALKEKIAKHGVRNS-LLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKD  860 (998)
Q Consensus       782 ~~W~~L~~~i~~~G~RNs-~~~aiAPTgSiS~i~g~s~giEP~~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~  860 (998)
                      ++|+.    +++||+||+ +++|||||||||+|+|||+||||+|+++|+|++   +|..+|+++ +.|+++|+|.++   
T Consensus       528 ~~w~~----~~~~G~rns~~ltaIAPTgTiS~i~g~S~GIEP~~a~~~~rr~---~~~~~n~~~-~~l~~~g~~~~~---  596 (739)
T 1l1l_A          528 ADQDY----SKTLGCNESIKHTTVKPSGTVAKLAGASEGMHFHYGAYLIQRI---RFQDSDPLL-PALKACGYRTEA---  596 (739)
T ss_dssp             HHHHH----HHHHTCCCCSCCEEBCCCHHHHHHHTCCCTTCCBSCSEEEEEE---EEETTCTHH-HHHHHTTCEEEE---
T ss_pred             HHHHH----HHHhCCCChhheEEECCCccHHHhcCCCCcccccceeeEEEEe---eecccchHH-HHHHHcCCCchH---
Confidence            46764    778999998 999999999999999999999999999999998   488899975 899999999765   


Q ss_pred             HHHhcCCccccCCC-CChhhHhhhcccCCCChHhHHHHHHHhCC-cccccccceeecCCCCHHHHHHHHHHHHHcCCcEE
Q psy1689         861 QLIVNNGSIQDIEG-IPQKLKDLYKTVWEIPQKTVLDMAADRGA-FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTG  938 (998)
Q Consensus       861 ~i~~~~Gsv~~i~~-l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~-~iDqsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~  938 (998)
                      .++..+|+||+++. .|++++++|+||+||+|++||+|||++|| |||||||+|||+|+..+++|.++ ++||++|||| 
T Consensus       597 ~i~~~~g~v~~ip~~~~~~~~~~f~tA~eI~~~~~i~~~A~~Q~~wiDqsiS~Ti~~~~~~~~~l~~l-~~awk~GlK~-  674 (739)
T 1l1l_A          597 DIYTENTTCVEFPIKAVGADNPNFASAGTVSIAEQFATQAFLQTYWSDNAVSCTITFQDSEGDQVESL-LRQYRFITKS-  674 (739)
T ss_dssp             CSSSTTEEEEEEEEECTTTTCTTCCBTTTSCHHHHHHHHHHHHHHTCSSCBCCEEEECGGGGGGHHHH-HHHTTTTCSE-
T ss_pred             HHhhcCCceeeccccCchhhhhhcccHHhCCHHHHHHHHHHhcccccccccceeEEeCCchHHHHHHH-HHHHHhCCcE-
Confidence            45578899999987 57788999999999999999999999999 59999999999994447999999 6799999999 


Q ss_pred             EEEecCCcc
Q psy1689         939 MYYLRTKPA  947 (998)
Q Consensus       939 ~yY~r~~~~  947 (998)
                      +||+|...+
T Consensus       675 ~yylR~~~~  683 (739)
T 1l1l_A          675 TSLLPYFGG  683 (739)
T ss_dssp             EEEEECCCC
T ss_pred             EEEecCCCc
Confidence            566675554

>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*

Probab=93.23  E-value=0.55  Score=56.36  Aligned_cols=241  Identities=11%  Similarity=0.101  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHHHhhCCceeEehhhhhhhCC-C---CCCC-cee---ecCCccceecccCCCCcceeeecccccccccCC-
Q psy1689         185 RKLWFAILDSQIETGTPYMLYKDACNRKSN-Q---QNLG-TIK---CSNLCTEIVEYTSKDEVAVCNLASIALNMYINP-  255 (998)
Q Consensus       185 r~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~-~---~~~g-~I~---~sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~-  255 (998)
                      -+|++..+++..+..-|..++.|..-...+ .   ...| +-.   -.|-.++-.    ..-+++-.+.+|||++.--. 
T Consensus       251 ~dl~~~a~~~~ak~~fpn~~~~d~~~~~~g~~~~~~~MgCR~~l~~~~~~~g~~~----~~g~Gn~gvvTINLpRia~~~  326 (605)
T 1h7b_A          251 YDIKQLALECASKRMYPDIISAKNNKAITGSSVPVSPMGCRSFLSVWKDSTGNEI----LDGRNNLGVVTLNLPRIALDS  326 (605)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEHHHHHHHHCCSSCCCCBTTTBCCCCCBCTTSCBC----CTTCBEEEEEEEEHHHHHHTT
T ss_pred             HHHHHHHHHHhCCcccCchhhcccccccCCcccceeeecchhcchhhhhccCCcC----ccccceeeeEEeeHHHHHHHh
Confidence            478999999999999999999886522211 0   0000 000   011112210    11244555669999997532 


Q ss_pred             ---CCCCCC--hhHHHHHHHHHHHHHHHhhhcCC------CcH--------------HHHHHHHhhcC-CCccccchHHH
Q psy1689         256 ---ADKTYN--FTKLKDVAKIVTKNLNKIIDVNF------YPV--------------EEARNSNMRHR-PIGIGVQGLAD  309 (998)
Q Consensus       256 ---~~~~fD--~~~l~~~v~~avr~LD~vId~~~------~p~--------------~e~~~~~~~~R-~IGLGv~GLad  309 (998)
                         ..+..+  |+.|.+.+.++.+.|+.=.+.-.      +|.              .++....+..| ++.||+.||+.
T Consensus       327 ~~~a~gd~~~F~~~Ld~~l~l~~~~L~~r~~~l~~~~~~~~p~L~~~G~~~~~l~~~d~i~~~~~~~~~t~tiG~iGL~E  406 (605)
T 1h7b_A          327 YIGTQFNEQKFVELFNERMDLCFEALMCRISSLKGVKATVAPILYQEGAFGVRLKPDDDIIELFKNGRSSVSLGYIGIHE  406 (605)
T ss_dssp             EETTEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBGGGCHHHHTSSTTSSCCCTTSBSHHHHTTTTSEEEEEEECHHH
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhCcccccccCCcccHHHHhccCCcceeeeHHHHHH
Confidence               111112  56788888888887754222110      110              01111222122 37999999999


Q ss_pred             HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHH
Q psy1689         310 LFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA  388 (998)
Q Consensus       310 ~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~-f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~  388 (998)
                      ++. +.       |.+|+.+|+++|...+.+.+    +|.|- |.               . ..+|....--.-++.+-+
T Consensus       407 ~~~-l~-------a~~f~~~Il~~m~~~~~~~~----~e~g~~~~---------------l-~aTPAEs~~~Rfa~~D~k  458 (605)
T 1h7b_A          407 LNI-LV-------GRDIGREILTKMNAHLKQWT----ERTGFAFS---------------L-YSTPAENLCYRFCKLDTE  458 (605)
T ss_dssp             HHH-HH-------TSCCHHHHHHHHHHHHHHHH----HHHCCEEE---------------E-ECCCCTTHHHHHHHHHHH
T ss_pred             HHH-HH-------HHHHHHHHHHHHHHHHHHHH----HHHCCcee---------------E-EecccccHHHHHHHHHHH
Confidence            999 75       77899999999977766554    33452 11               0 112221111122334445


Q ss_pred             hcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCccccc
Q psy1689         389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDI  468 (998)
Q Consensus       389 ~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~  468 (998)
                      ++|+                |.|.|.  .|+|.|.|                                            
T Consensus       459 ~fG~----------------i~g~td--~~YYTNS~--------------------------------------------  476 (605)
T 1h7b_A          459 KYGS----------------VKDVTD--KGWYTNSF--------------------------------------------  476 (605)
T ss_dssp             HHCC----------------CTTTTS--SSSCCCTT--------------------------------------------
T ss_pred             HcCC----------------cCCCCC--CCCCCCCE--------------------------------------------
Confidence            5551                112111  22222211                                            


Q ss_pred             CCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCC--CHHHHHHHHHHHHH
Q psy1689         469 EGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEI--NYAKMSSMHFHGWK  528 (998)
Q Consensus       469 ~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~--t~~~i~~~~~~Awk  528 (998)
                       .+|        ...++++.+.|+..+..|++...+...-+++++.  +++.+.++...|.+
T Consensus       477 -hip--------V~~~~~~~eki~~e~~~~~~~~GG~i~~v~l~~~~~n~~a~~~lv~~~~~  529 (605)
T 1h7b_A          477 -HVS--------VEENITPFEKISREAPYHFIATGGHISYVELPDMKNNLKGLEAVWDYAAQ  529 (605)
T ss_dssp             -CCC--------TTSCCCHHHHHHHHGGGGGTCTTBCCEEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             -Eec--------CCCCCCHHHHHHhhcccccccCCeeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence             122        1345889999999999999999999999999963  67888888888887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	998
d1rlra2	525	c.7.1.2 (A:222-748) R1 subunit of ribonucleotide r	1e-95
d1rlra2	525	c.7.1.2 (A:222-748) R1 subunit of ribonucleotide r	2e-35
d1rlra2	525	c.7.1.2 (A:222-748) R1 subunit of ribonucleotide r	4e-17
d1peqa2	525	c.7.1.2 (A:175-699) R1 subunit of ribonucleotide r	1e-72
d1peqa2	525	c.7.1.2 (A:175-699) R1 subunit of ribonucleotide r	9e-33
d1peqa2	525	c.7.1.2 (A:175-699) R1 subunit of ribonucleotide r	7e-15
d1l1la_	721	c.7.1.4 (A:) B12-dependent (class II) ribonucleoti	2e-28
d1l1la_	721	c.7.1.4 (A:) B12-dependent (class II) ribonucleoti	2e-13

>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 525

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: R1 subunit of ribonucleotide reductase, C-terminal domain
domain: R1 subunit of ribonucleotide reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  311 bits (796), Expect = 1e-95
 Identities = 115/478 (24%), Positives = 188/478 (39%), Gaps = 53/478 (11%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 77  RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 136

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE----AEGKFIRQVPARKLWFAILDSQIETGTPYMLYK 206
           P+   GL D++    ++  + Y      +    ++V A +L+  ++  +  TG  Y+   
Sbjct: 137 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 196

Query: 207 DACNRKSNQ-QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN-PADKTYNFTK 264
           D CN  S     +  ++ SNLC EI   T            IAL            N  +
Sbjct: 197 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDE 256

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L ++A +  + L+ ++D   YP+  A+   M  R +GIGV   A    +    +    + 
Sbjct: 257 LDELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSAN 316

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL------W 378
            L  + FE I Y  L+AS E+A   G    +  +  ++GIL  D +      +      +
Sbjct: 317 NLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHY 376

Query: 379 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 438
           DW AL+E I  HG+RNS L A MP+ +++QI       EP    +  +    G  + V  
Sbjct: 377 DWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVV- 435

Query: 439 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAADR 497
                                             + L D Y+ +WE+P     L +    
Sbjct: 436 -------------------------------PDYEHLHDAYELLWEMPGNDGYLQLVGIM 464

Query: 498 GAFIDQSQSLNIYMAEINYA-------KMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 548
             FIDQS S N       +        ++       +K G+KT +YY  T+   + + 
Sbjct: 465 QKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNTRDDIDDLS 521

>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 525

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: R1 subunit of ribonucleotide reductase, C-terminal domain
domain: R1 subunit of ribonucleotide reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  140 bits (352), Expect = 2e-35
 Identities = 42/179 (23%), Positives = 66/179 (36%), Gaps = 41/179 (22%)

Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW AL+E I  HG+RNS L A MP+ +++QI       EP    +  +    G  + V 
Sbjct: 376 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVV 435

Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
                                              + L D Y+ +WE+P     L +   
Sbjct: 436 --------------------------------PDYEHLHDAYELLWEMPGNDGYLQLVGI 463

Query: 901 RGAFIDQSQSLNIYMAEINYA-------KMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 952
              FIDQS S N       +        ++       +K G+KT +YY  T+   + + 
Sbjct: 464 MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNTRDDIDDLS 521

>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 525

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: R1 subunit of ribonucleotide reductase, C-terminal domain
domain: R1 subunit of ribonucleotide reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 83.4 bits (205), Expect = 4e-17
 Identities = 23/83 (27%), Positives = 37/83 (44%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  ++   WH ++   L LK N G E  R R + YG+ I      R+      +L  
Sbjct: 77  RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 136

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+   GL D++    ++  + Y 
Sbjct: 137 PSDVPGLYDAFFADQEEFERLYT 159

>d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide reductase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 525

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: R1 subunit of ribonucleotide reductase, C-terminal domain
domain: R1 subunit of ribonucleotide reductase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  247 bits (632), Expect = 1e-72
 Identities = 94/485 (19%), Positives = 171/485 (35%), Gaps = 72/485 (14%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YL   H DI  FL+ K+    E+ R + L  G+ IPD   R  + +AQ +L  
Sbjct: 77  RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFS 136

Query: 151 PNTCRGLSDSWGEKF--DDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYKD 207
           P   +             + Y +  A+    +  + AR  +  + + Q E+G PY++++D
Sbjct: 137 PYDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMFED 196

Query: 208 ACNRKS-------NQQNLGTIKCSNLCTEI---VEYTSKDEVAVCNLASIALNMYINPAD 257
             NR +              I   N  +     ++YT       CNL S+ +   ++  D
Sbjct: 197 TVNRANPIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHVMDSPD 256

Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
                         V          +   V      N     IG+G   L     +  + 
Sbjct: 257 IGRTVETAIRGLTAV------SDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIA 310

Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGIL----------- 365
           +   E+       F TI + A+  S  +A   G  +  +  S  + G             
Sbjct: 311 YGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQP 370

Query: 366 -------QYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEP 418
                   +   G+T      W  L++ + ++G+ N  L A  PT S + I     S  P
Sbjct: 371 KTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHP 430

Query: 419 YTSNIYSRRV-LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKD 477
             + I  R+   +G        +                                 +  D
Sbjct: 431 IVAKIEIRKEGKTGRVYYPAPFM-------------------------------TNENLD 459

Query: 478 LYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGLKTGMY 536
           +Y+  ++I  + ++D  A+    +DQ  SL ++         ++    + W+ G+K+ +Y
Sbjct: 460 MYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS-LY 518

Query: 537 YLRTK 541
           Y+R +
Sbjct: 519 YIRLR 523

>d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide reductase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 525

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: R1 subunit of ribonucleotide reductase, C-terminal domain
domain: R1 subunit of ribonucleotide reductase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  132 bits (331), Expect = 9e-33
 Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 34/177 (19%)

Query: 771 YDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSR 830
           +   G+T      W  L++ + ++G+ N  L A  PT S + I     S  P  + I  R
Sbjct: 379 FARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIR 438

Query: 831 RV-LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI 889
           +   +G        +                                 +  D+Y+  ++I
Sbjct: 439 KEGKTGRVYYPAPFM-------------------------------TNENLDMYQDAYDI 467

Query: 890 PQKTVLDMAADRGAFIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
             + ++D  A+    +DQ  SL ++         ++    + W+ G+K+ +YY+R +
Sbjct: 468 GPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS-LYYIRLR 523

>d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide reductase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 525

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: R1 subunit of ribonucleotide reductase, C-terminal domain
domain: R1 subunit of ribonucleotide reductase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 76.2 bits (186), Expect = 7e-15
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YL   H DI  FL+ K+    E+ R + L  G+ IPD   R  + +AQ +L  
Sbjct: 77  RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFS 136

Query: 61  PNACRGLSDSWGEKF--DDLYKKYEAEGLVY 89
           P   +             + Y +  A+  V 
Sbjct: 137 PYDIQRRYGKPFGDIAISERYDELIADPHVR 167

>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide reductase {Lactobacillus leichmannii [TaxId: 28039]} Length = 721

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: B12-dependent (class II) ribonucleotide reductase
domain: B12-dependent (class II) ribonucleotide reductase
species: Lactobacillus leichmannii [TaxId: 28039]

 Score =  120 bits (300), Expect = 2e-28
 Identities = 52/416 (12%), Positives = 96/416 (23%), Gaps = 61/416 (14%)

Query: 102 WHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSW 161
              D  D   L           R     L   D+         Q  LM        S + 
Sbjct: 294 TAVDAADICNLIGKAVVAGNVRRSAELALGSNDDQDFISMKQDQEKLMHHRWASNNSVAV 353

Query: 162 GEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKS--NQQNLG 219
              F                      +  I     E G P ++  D              
Sbjct: 354 DSAFSG--------------------YQPIAAGIRENGEPGIVNLDLSKNYGRIVDGYQA 393

Query: 220 TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKI 279
            I      T      S      CNL  +   +                    +     K 
Sbjct: 394 GIDGDVEGTNPCGEISLANGEPCNLFEVFPLIA-------EEQGWDLQEVFALAARYAKR 446

Query: 280 IDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGAL 339
           +  + Y  E +R    ++R IGI + G+ D  +                   +       
Sbjct: 447 VTFSPYDWEISREIIQKNRRIGISMSGIQDWLLTRLGNRVVTG-------FKDDFDPETH 499

Query: 340 EASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIA 399
           EA           +  +            ++        D++         G   S+   
Sbjct: 500 EAIKVPVYDKRAIKMVD-----------QLYKAVVKADQDYSK------TLGCNESIKHT 542

Query: 400 PM-PTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQL 458
            + P+ + A++ G +E    +      +R+   +    +  LL  L   G   +   D  
Sbjct: 543 TVKPSGTVAKLAGASEGMHFHYGAYLIQRIRFQD----SDPLLPALKACGYRTE--ADIY 596

Query: 459 IVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF-IDQSQSLNIYMAE 513
             N   ++            + +   +         A    +  D + S  I   +
Sbjct: 597 TENTTCVEFPIKAVGADNPNFASAGTVSIAEQFATQAFLQTYWSDNAVSCTITFQD 652

>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide reductase {Lactobacillus leichmannii [TaxId: 28039]} Length = 721

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: B12-dependent (class II) ribonucleotide reductase
domain: B12-dependent (class II) ribonucleotide reductase
species: Lactobacillus leichmannii [TaxId: 28039]

 Score = 72.3 bits (176), Expect = 2e-13
 Identities = 23/212 (10%), Positives = 57/212 (26%), Gaps = 18/212 (8%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           +R+  Q+N  +   +  + +         +     +             +YD+       
Sbjct: 457 SREIIQKNRRIGISMSGIQDWLLTRLGNRVVTGFKDDFDPETHEAIKVPVYDKRAIKMVD 516

Query: 768 GFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPM-PTASTAQILGNNESFEPYTSN 826
                             A ++     G   S+    + P+ + A++ G +E    +   
Sbjct: 517 QLYK----------AVVKADQDYSKTLGCNESIKHTTVKPSGTVAKLAGASEGMHFHYGA 566

Query: 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV 886
              +R+   +    +  LL  L   G   +   D    N   ++            + + 
Sbjct: 567 YLIQRIRFQD----SDPLLPALKACGYRTE--ADIYTENTTCVEFPIKAVGADNPNFASA 620

Query: 887 WEIPQKTVLDMAADRGAF-IDQSQSLNIYMAE 917
             +         A    +  D + S  I   +
Sbjct: 621 GTVSIAEQFATQAFLQTYWSDNAVSCTITFQD 652

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	998
d1rlra2	525	R1 subunit of ribonucleotide reductase, C-terminal	100.0
d1peqa2	525	R1 subunit of ribonucleotide reductase, C-terminal	100.0
d1l1la_	721	B12-dependent (class II) ribonucleotide reductase	100.0
d1rlra2	525	R1 subunit of ribonucleotide reductase, C-terminal	100.0
d1peqa2	525	R1 subunit of ribonucleotide reductase, C-terminal	100.0
d1l1la_	721	B12-dependent (class II) ribonucleotide reductase	99.97
d1hk8a_	561	Class III anaerobic ribonucleotide reductase NRDD	91.61

>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: R1 subunit of ribonucleotide reductase, C-terminal domain
domain: R1 subunit of ribonucleotide reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.9e-96  Score=867.91  Aligned_cols=437  Identities=28%  Similarity=0.451  Sum_probs=398.4

Q ss_pred             hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689          70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL  148 (998)
Q Consensus        70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L  148 (998)
                      +....|.++|+... ...++|+||||+|+||++|||||++||++|++.|.+.+|++++|++|+|||+||++++++++|+|
T Consensus        55 sG~v~f~k~~d~~~~~i~qgg~RrgA~~~~l~~~HpDI~~Fi~~K~~~g~~~~~~~~~~~~v~i~d~fm~~~~~~~~~~l  134 (525)
T d1rlra2          55 TGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITL  134 (525)
T ss_dssp             CCSHHHHHHHHHHHTTTSSSSSSSCCEEEEEETTBTTHHHHTTTTCSSSCGGGCCTTSEEEEEECHHHHHHHHTTCEEEE
T ss_pred             CChhhHHHHHHHHHHHHHcCCcccccEEEEEcCCcchHHHHHHhccCcCchhhhhhhccccccCChHHHHHHhhCcccee
Confidence            55788999998886 44667899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCcchhhch---hHHHHHHHHHHc-CcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCC-CCCCceee
Q psy1689         149 MCPNTCRGLSDSWGE---KFDDLYKKYEAE-GKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQ-QNLGTIKC  223 (998)
Q Consensus       149 f~P~~~~~L~~~yg~---~F~~~Y~~~e~~-g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~-~~~g~I~~  223 (998)
                      |+|.+++.+.+.++.   +|+..|.+.+.. +...++|+|++||++|++++|+||+||++|+|++|+++|. ++.|+|++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Arel~~~i~~~~~etG~P~i~f~d~~N~~~~~~~~~~~I~~  214 (525)
T d1rlra2         135 FSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQ  214 (525)
T ss_dssp             ECTTTSTTHHHHHHHCHHHHHHHHHHHHHCTTSCEEEEEHHHHHHHHHHHHHHHSCEEEEEHHHHHHSSSBCTTTSCCCC
T ss_pred             eeccccccccccchhhHHHHHHHhhhhhccCccccchHHHHHHHHHHHHhhhccCccceeeeeccccccccccccceeec
Confidence            999999998887754   556666666554 4567899999999999999999999999999999999996 57889999


Q ss_pred             cCCccceecccCC--------CCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHh
Q psy1689         224 SNLCTEIVEYTSK--------DEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNM  295 (998)
Q Consensus       224 sNpC~EI~l~~~~--------~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~  295 (998)
                      ||||+||+||+.+        ++.++|||+|+||.++       |||+.|+++|+++||+||+|||.+.||+|++++.++
T Consensus       215 sNlC~Ei~l~~~~~~~~~~~~~~~~~~~l~s~n~~~~-------~d~~~l~~~v~~~vr~LD~vid~~~~p~~~~~~~~~  287 (525)
T d1rlra2         215 SNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAI-------NNLDELDELAILAVRALDALLDYQDYPIPAAKRGAM  287 (525)
T ss_dssp             CCTTSCCCCCCBCCSSTTCTTCBCEECEEEEEETTSC-------SSGGGHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHH
T ss_pred             CCcccccccCCCcccccCCCccceeeeeccccCcccc-------ccHHHHHHHHHHHHHHHHHhhccccccchHHHHHHH
Confidence            9999999998754        4567899999999886       689999999999999999999999999999999999


Q ss_pred             hcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCC-
Q psy1689         296 RHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-  374 (998)
Q Consensus       296 ~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p-  374 (998)
                      +.|+||||+|||||+|+++||+|+|+||++++++||++|+++|++||++||+|+|+||.|++|+|++|.|+++.+.... 
T Consensus       288 ~~R~IGLGvmGlad~L~~lgi~Y~S~ea~~~~~~i~e~i~~~a~~aS~eLAke~G~~p~f~~s~~~~g~~~~~~~~~~~~  367 (525)
T d1rlra2         288 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD  367 (525)
T ss_dssp             HHCCEEEEEECHHHHHHHTTCCSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGBGGGGTCCHHHHSCGGGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHhhCHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhcccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998876432 


Q ss_pred             -----CCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCC
Q psy1689         375 -----TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL  449 (998)
Q Consensus       375 -----~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~  449 (998)
                           ....+|++||++|++||+|||+++|||||||+|+|+|+|+||||+|+++|.|++..|.+..+++           
T Consensus       368 ~~~~~~~~~~w~~lr~~i~~~G~RNs~~~aiaPT~s~s~i~~~s~gieP~~~~~~~r~~~~g~~~~~~~-----------  436 (525)
T d1rlra2         368 TIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVP-----------  436 (525)
T ss_dssp             GTCCCCCCSCHHHHHHHHHHHCCSCSCCBCBCCCSHHHHHTTCCCTTCCCSCSEEEEEETTEEEEEECT-----------
T ss_pred             cccccccccCHHHHHHHHHHhCeecchhhhhhcccchhhhcccCCccccccceEEEEEecCceeEeecC-----------
Confidence                 2357899999999999999999999999999999999999999999999999998887766543           


Q ss_pred             CcHHHHHHHhhcCCcccccCCCChhhhhhcccccCC-ChHHHHHHHHHhCCccccccceeEeecC-------CCHHHHHH
Q psy1689         450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI-PQKTVLDMAADRGAFIDQSQSLNIYMAE-------INYAKMSS  521 (998)
Q Consensus       450 ~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei-~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-------~t~~~i~~  521 (998)
                                           .+++++++|+|++|| ++++||+|||++|||||||||+|||+++       .++++|.+
T Consensus       437 ---------------------~~~~l~~~~~ta~ei~~~~~~v~~~A~~Q~~iDqsiS~tln~~~~~~~~~~~~~~~v~~  495 (525)
T d1rlra2         437 ---------------------DYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLK  495 (525)
T ss_dssp             ---------------------THHHHTTTCCCGGGSSCSHHHHHHHHHHHTTCSSCBCCCEEECGGGSGGGCCCHHHHHH
T ss_pred             ---------------------ChHHHHHHHHHHHHhcCchHHHHHHHHHhhcccHHHhCccCCCccccCCCCCCHHHHHH
Confidence                                 235567789999999 6899999999999999999999999842       47899999


Q ss_pred             HHHHHHHcCCceEEEEeeccccccc
Q psy1689         522 MHFHGWKLGLKTGMYYLRTKPAANA  546 (998)
Q Consensus       522 ~~~~Awk~GlKt~~yY~R~~~~~~~  546 (998)
                      +|++||++|||| +||+|++.+...
T Consensus       496 ~~~~Awk~GlKT-~Yy~~Sr~~~~~  519 (525)
T d1rlra2         496 DLLTAYKFGVKT-LYYQNTRDDIDD  519 (525)
T ss_dssp             HHHHHHHTTCCE-ECCEEECCCHHH
T ss_pred             HHHHHHHhCCCc-cCcCcChhhhhh
Confidence            999999999998 999999876543

>d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide reductase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: R1 subunit of ribonucleotide reductase, C-terminal domain
domain: R1 subunit of ribonucleotide reductase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.1e-92  Score=839.76  Aligned_cols=433  Identities=23%  Similarity=0.374  Sum_probs=373.5

Q ss_pred             hhhhhhHHHHHHHHhh-hccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCcee
Q psy1689          69 DSWGEKFDDLYKKYEA-EGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWS  147 (998)
Q Consensus        69 ~s~g~~F~~lY~~~E~-~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~  147 (998)
                      .+....|.++|+.... ..++|+||||+|+||++|||||++||++|++.+++.+|+++++++|+|||+||++|+++..|+
T Consensus        54 ssG~v~f~~~~d~~~~~v~qgg~Rrga~~~~l~~~HpDI~~Fi~~K~~~~~~~~~~~~~~~~~~i~d~Fm~~v~~~~~~~  133 (525)
T d1peqa2          54 SSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA  133 (525)
T ss_dssp             CCCSHHHHHHHHHHHHHC------CCEEEEEEETTSTTHHHHHGGGC--------CCSCEEEEECCSHHHHHHHTTCEEE
T ss_pred             cCChhhHHHHHHHHHHHHhcCCcccccEEEEEcCCcccHHHHHHhCccCCCcccceeeecchhhhhHHHHHHHhhccccc
Confidence            3556789999988763 456789999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCCcchhhchh--HHHHHHHHHHc-CcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeec
Q psy1689         148 LMCPNTCRGLSDSWGEK--FDDLYKKYEAE-GKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCS  224 (998)
Q Consensus       148 Lf~P~~~~~L~~~yg~~--F~~~Y~~~e~~-g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~s  224 (998)
                      ||+|.+++.+.+.++.+  +.+.|.+++.. +...++|+||+||++|++++|+||+||++|+|++|+++++  .|+|++|
T Consensus       134 l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~Ar~l~~~i~~~~~~tg~Pgi~f~D~iN~~~~~--~~~i~~s  211 (525)
T d1peqa2         134 LFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMS  211 (525)
T ss_dssp             EECHHHHHHHHSSCGGGSCHHHHHHHHHHCTTSCEEEEEHHHHHHHHHHHHHHHSCCEEECHHHHHHHCCS--SSCCCCC
T ss_pred             eecccccccccCccccchhHHHHHHHHHhcCCeeeeeehHHHHHHHHHHHHhhhccccccchhhhcccccc--cceEecc
Confidence            99999877666554433  34556666654 4567889999999999999999999999999999999987  4899999


Q ss_pred             CCccceecccCC------------CCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCC-CcHHHHH
Q psy1689         225 NLCTEIVEYTSK------------DEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNF-YPVEEAR  291 (998)
Q Consensus       225 NpC~EI~l~~~~------------~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~-~p~~e~~  291 (998)
                      |||+||.++...            ++.++|||+|+||.+|+       |++.++++++.++++||+|+|.+. +|+++++
T Consensus       212 Nlc~EI~~~n~~~~~~~~~~~~~l~~~~~CnL~sinl~~~~-------d~~~~~~~~~~a~r~Ld~vid~~~~~p~~~~~  284 (525)
T d1peqa2         212 NLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHVM-------DSPDIGRTVETAIRGLTAVSDMSHIRSVPSIA  284 (525)
T ss_dssp             CTTSCCCCCCCCCEECTTSCEEECCCCEECEEEEEEHHHHH-------TCSCHHHHHHHHHHHHHHHHHTCCCTTCHHHH
T ss_pred             cccccccccCChhccccccccccccccceeecccccccccc-------ccccccceeeehhhhhhHhhhhcccCcHHHHH
Confidence            999999876543            35678999999999995       567899999999999999999986 6999999


Q ss_pred             HHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCcCccCcccccc-
Q psy1689         292 NSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYDM-  369 (998)
Q Consensus       292 ~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G-~f~~f~~S~~~~G~l~~d~-  369 (998)
                      +.+++.|+||||+||||++|+++|++|+|+||++++++||+.|+++|+++|++||+|+| +||.|++|+|++|.+..+. 
T Consensus       285 ~~~~~~R~iGlGv~Gla~~L~~lgi~Y~S~ea~~~~~~i~~~i~~~a~~aS~eLAkerG~~f~~f~~s~~~~g~~~~~~~  364 (525)
T d1peqa2         285 AGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL  364 (525)
T ss_dssp             HHHHHHCCEEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTGGGSHHHHSHHHHHHH
T ss_pred             HHHHHhhhhccCcchHHHHHHHcCCccccccchhhhHHHHHHHHHHHHHHHHHHHHhhCCCCcccccChhhcCchhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999 8999999999999764221 


Q ss_pred             -----------------cCCCCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEcc-cc
Q psy1689         370 -----------------WGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL-SG  431 (998)
Q Consensus       370 -----------------~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~-~G  431 (998)
                                       ....+....+|++||+++++||+||++++++|||+|+|++.|+|+||||+|+++|.|+.. .|
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~i~~~G~rNs~l~aiaPt~s~s~~~~~t~gieP~~~~~~~r~~~~~g  444 (525)
T d1peqa2         365 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTG  444 (525)
T ss_dssp             SSCCSCSSHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHCCSCSCCBCBCCCCTHHHHHTCCSSSSCCSCSEEEECCSTTS
T ss_pred             hhhccccccchhhhccccCCCcchHHHHHHHHHHHHhhhhhhhhhhccccccccchhhccccccccchhhheeEEecCCc
Confidence                             112234567899999999999999999999999999999999999999999999998742 34


Q ss_pred             ceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEee
Q psy1689         432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYM  511 (998)
Q Consensus       432 ~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l  511 (998)
                      ++..+                               .|.+|++++++|+||+||+|++||+|||++|||||||||+|||+
T Consensus       445 ~~~~~-------------------------------~~~l~~~~k~vf~ta~ei~~~~~v~~~a~~Q~~iDqsiS~tin~  493 (525)
T d1peqa2         445 RVYYP-------------------------------APFMTNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFF  493 (525)
T ss_dssp             CEEEE-------------------------------CTTCCTTSGGGCCCHHHHCHHHHHHHHHHHHTTCSSCBCCCEEE
T ss_pred             eEEee-------------------------------CCCCCHHHHhhcCCcccCCHHHHHHHHHHHhccccHhhcccccc
Confidence            43332                               46678889999999999999999999999999999999999999


Q ss_pred             c-CCCHHHHHHHHHHHHHcCCceEEEEeeccc
Q psy1689         512 A-EINYAKMSSMHFHGWKLGLKTGMYYLRTKP  542 (998)
Q Consensus       512 ~-~~t~~~i~~~~~~Awk~GlKt~~yY~R~~~  542 (998)
                      | +.++++|.++|++||++|||| +||||+++
T Consensus       494 p~~~~~~dv~~~~~~awk~GlKt-lYY~r~~~  524 (525)
T d1peqa2         494 PDTATTRDINKAQIYAWRKGIKS-LYYIRLRQ  524 (525)
T ss_dssp             CTTCCHHHHHHHHHHHHHHTCCE-ECCEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCc-eeeccccc
Confidence            8 579999999999999999999 99999986

>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide reductase {Lactobacillus leichmannii [TaxId: 28039]}

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: B12-dependent (class II) ribonucleotide reductase
domain: B12-dependent (class II) ribonucleotide reductase
species: Lactobacillus leichmannii [TaxId: 28039]

Probab=100.00  E-value=9.9e-55  Score=530.94  Aligned_cols=406  Identities=14%  Similarity=0.067  Sum_probs=300.4

Q ss_pred             hhhhhhHHHHHHHHhh-hccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCcee
Q psy1689          69 DSWGEKFDDLYKKYEA-EGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWS  147 (998)
Q Consensus        69 ~s~g~~F~~lY~~~E~-~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~  147 (998)
                      .+..+.|.++|+.... ..+.|.|+.+     .++|+||..++..+...|. .+|..+  +++.++|.++....+++.|.
T Consensus       268 ASGpvp~~~l~d~~~~~i~~~~grrl~-----~~~~~di~~~i~~~v~~g~-vrrsa~--i~~~~~dd~~~~~~k~~~~~  339 (721)
T d1l1la_         268 ASGPMPLISMLLDVNEVLNNKAGGRLT-----AVDAADICNLIGKAVVAGN-VRRSAE--LALGSNDDQDFISMKQDQEK  339 (721)
T ss_dssp             CCCSHHHHHHHHHHHHHHHTTTTSCCC-----HHHHHHHHHHHHHHHHTTC-----CE--EEEEETTCHHHHHGGGCHHH
T ss_pred             CcchhHHHHHHHhhhHHhhccCCcccc-----chhhhhhhhhhhhhhhccc-hhhhhc--ccccCccHHHHHHHhccccc
Confidence            3567899999988753 2233344433     2478899999888876654 344444  44444444444444455666


Q ss_pred             eeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhC------CCCCCCce
Q psy1689         148 LMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKS------NQQNLGTI  221 (998)
Q Consensus       148 Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~------~~~~~g~I  221 (998)
                      +..+...                    .+...+.++++++|++|++++|++|+||++|+|++|+.+      +..+.|+|
T Consensus       340 ~~~~~~~--------------------~~n~~~~~~a~el~~~i~~~~~~sGEPGi~f~d~a~~~~~~n~~~~~~~~~~i  399 (721)
T d1l1la_         340 LMHHRWA--------------------SNNSVAVDSAFSGYQPIAAGIRENGEPGIVNLDLSKNYGRIVDGYQAGIDGDV  399 (721)
T ss_dssp             HHHTGGG--------------------EEEEEEECTTCCCHHHHHHHHHHHSCCEEEEHHHHHHCSSGGGCCCTTTTTTE
T ss_pred             cchhccc--------------------ccCcccccccchhHHHHHHHHHhhcchhhhhHHHHHHhhhhcccCCCCccCce
Confidence            6544321                    344567889999999999999999999999999987653      44567899


Q ss_pred             eecCCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCc
Q psy1689         222 KCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIG  301 (998)
Q Consensus       222 ~~sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IG  301 (998)
                      .+||||+||+++.    ..+|||+||||.+|+.+      .+.+.++++++++++|++++ +.||++++++.+++.|+||
T Consensus       400 ~~tNPCgEi~L~~----~~~CNL~sInL~~~~~~------~~~~~~~~~~a~~~~~~v~~-~~~~~~~~~~~~~~~R~iG  468 (721)
T d1l1la_         400 EGTNPCGEISLAN----GEPCNLFEVFPLIAEEQ------GWDLQEVFALAARYAKRVTF-SPYDWEISREIIQKNRRIG  468 (721)
T ss_dssp             EEECTTCCSEEET----TCBCCEEEECHHHHHHT------TCCHHHHHHHHHHHHHHHTT-SCCSCHHHHHHHHHHCCCE
T ss_pred             eeccchhhccccc----cccceehhccchhhcch------HHHHHHHHHHHHHHHHhhhc-cccchHHHHHHHHhhhhhc
Confidence            9999999999874    35899999999999753      34588999999999999886 8999999999999999999


Q ss_pred             cccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHH
Q psy1689         302 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWA  381 (998)
Q Consensus       302 LGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~  381 (998)
                      ||+|||||+|++++.+|.+.++.+..       ..        .|.+.+.++.|++..+  ..  ++.+     ....|+
T Consensus       469 lGv~GlaD~l~~~~~~~~~~~~~~~~-------~~--------~~~e~~~~~~~~~~~~--~~--l~~~-----~~~~~~  524 (721)
T d1l1la_         469 ISMSGIQDWLLTRLGNRVVTGFKDDF-------DP--------ETHEAIKVPVYDKRAI--KM--VDQL-----YKAVVK  524 (721)
T ss_dssp             EEECSHHHHHHHHHSSCSEEEEEEEE-------CT--------TTCCEEEEEEECHHHH--HH--HHHH-----HHHHHH
T ss_pred             cCcccHhHHHHHccChHHHHHHHHHH-------HH--------HHHHHhhhhhhccchH--HH--HHHH-----hhhcHH
Confidence            99999999999999999876543211       11        1111122211111100  00  0000     012345


Q ss_pred             HHHHHHHhcCC-CcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhh
Q psy1689         382 ALKEKIAKHGV-RNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIV  460 (998)
Q Consensus       382 ~Lr~~i~~~G~-RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~  460 (998)
                      ..++.++++|+ ||+++|+||||||+|+|+|+|+||||+||++|+|+++.|+    |.++.+.|++.|++.++.   ...
T Consensus       525 ~~~~~~~~~Gi~r~~~~ttiaPTGTiS~i~g~SsGIeP~~a~~y~R~v~~~~----~dpl~~~l~~~g~~~e~~---~~~  597 (721)
T d1l1la_         525 ADQDYSKTLGCNESIKHTTVKPSGTVAKLAGASEGMHFHYGAYLIQRIRFQD----SDPLLPALKACGYRTEAD---IYT  597 (721)
T ss_dssp             HHHHHHHHHTCCCCSCCEEBCCCHHHHHHHTCCCTTCCBSCSEEEEEEEEET----TCTHHHHHHHTTCEEEEC---SSS
T ss_pred             HHHHHHHHhCCCcccceeeecCCCceeeECCcccccCccccceeEEEeecCC----CChHHHHHHHhCCcchHH---hcc
Confidence            56677888998 5557999999999999999999999999999999997664    888999999999987642   223


Q ss_pred             cCCcccccC-CCChhhhhhcccccCCChHHHHHHHHHhCC-ccccccceeEeecCCCHHHHHHHHHHHHHcCCceEEE--
Q psy1689         461 NNGSIQDIE-GIPQKLKDLYKTVWEIPQKTVLDMAADRGA-FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMY--  536 (998)
Q Consensus       461 ~~Gsv~~~~-~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~-~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~GlKt~~y--  536 (998)
                      +++.+...| .+|+..+.+|+||+||++.+||+|||++|+ ||||+||+|||+|+...+++.. |++||+.||||+|+  
T Consensus       598 ~~~~vv~~p~~~~~~~~~~f~ta~di~~~~hl~~~a~~Q~~wvd~~iSkTin~p~~e~~~v~~-yl~~~~~g~kGitvl~  676 (721)
T d1l1la_         598 ENTTCVEFPIKAVGADNPNFASAGTVSIAEQFATQAFLQTYWSDNAVSCTITFQDSEGDQVES-LLRQYRFITKSTSLLP  676 (721)
T ss_dssp             TTEEEEEEEEECTTTTCTTCCBTTTSCHHHHHHHHHHHHHHTCSSCBCCEEEECGGGGGGHHH-HHHHTTTTCSEEEEEE
T ss_pred             CCCceEeccccCccccccceeEcCcCCHHHHHHHHHHhccccccccCeeEEEECCchHHHHHH-HHHHHhcCCcEEEEEe
Confidence            444444444 578888889999999999999999999999 6999999999999765677865 99999999999999  


Q ss_pred             Eeeccccccc
Q psy1689         537 YLRTKPAANA  546 (998)
Q Consensus       537 Y~R~~~~~~~  546 (998)
                      |. ...-.++
T Consensus       677 y~-d~sy~qa  685 (721)
T d1l1la_         677 YF-GGSLQQA  685 (721)
T ss_dssp             CC-CCCCTTC
T ss_pred             ec-CCCccCC
Confidence            84 3333444

>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: R1 subunit of ribonucleotide reductase, C-terminal domain
domain: R1 subunit of ribonucleotide reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-52  Score=494.51  Aligned_cols=224  Identities=27%  Similarity=0.426  Sum_probs=199.9

Q ss_pred             CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCCc
Q psy1689         587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT  666 (998)
Q Consensus       587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~~  666 (998)
                      ..|+||||+|||||+|++|||||+|+||++|+++||++|+++|+++|++||+|+|+||.|++|+|++|.+++|.|.....
T Consensus       288 ~~R~IGLGvmGlad~L~~lgi~Y~S~ea~~~~~~i~e~i~~~a~~aS~eLAke~G~~p~f~~s~~~~g~~~~~~~~~~~~  367 (525)
T d1rlra2         288 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD  367 (525)
T ss_dssp             HHCCEEEEEECHHHHHHHTTCCSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGBGGGGTCCHHHHSCGGGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHhhCHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhcccccccccccccc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999987643110


Q ss_pred             cchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHHH
Q psy1689         667 DLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM  746 (998)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  746 (998)
                      .                                                                               
T Consensus       368 ~-------------------------------------------------------------------------------  368 (525)
T d1rlra2         368 T-------------------------------------------------------------------------------  368 (525)
T ss_dssp             G-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             HhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccccccc
Q psy1689         747 KNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN  826 (998)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a~  826 (998)
                           +                       .+....++|++||+.|++||+|||+++|||||||||+|+|+|+||||+|++
T Consensus       369 -----~-----------------------~~~~~~~~w~~lr~~i~~~G~RNs~~~aiaPT~s~s~i~~~s~gieP~~~~  420 (525)
T d1rlra2         369 -----I-----------------------ANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGY  420 (525)
T ss_dssp             -----T-----------------------CCCCCCSCHHHHHHHHHHHCCSCSCCBCBCCCSHHHHHTTCCCTTCCCSCS
T ss_pred             -----c-----------------------cccccccCHHHHHHHHHHhCeecchhhhhhcccchhhhcccCCccccccce
Confidence                 0                       001135789999999999999999999999999999999999999999999


Q ss_pred             eEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCC-ChHhHHHHHHHhCCcc
Q psy1689         827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI-PQKTVLDMAADRGAFI  905 (998)
Q Consensus       827 ~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei-~~~~~I~m~a~~Q~~i  905 (998)
                      +|.|++..|++..++|.+                                ++++++|+||+|| ++++||+|||++||||
T Consensus       421 ~~~r~~~~g~~~~~~~~~--------------------------------~~l~~~~~ta~ei~~~~~~v~~~A~~Q~~i  468 (525)
T d1rlra2         421 VSIKASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMPGNDGYLQLVGIMQKFI  468 (525)
T ss_dssp             EEEEEETTEEEEEECTTH--------------------------------HHHTTTCCCGGGSSCSHHHHHHHHHHHTTC
T ss_pred             EEEEEecCceeEeecCCh--------------------------------HHHHHHHHHHHHhcCchHHHHHHHHHhhcc
Confidence            999999999888776543                                3467889999999 7999999999999999


Q ss_pred             cccccceeecC-------CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccc
Q psy1689         906 DQSQSLNIYMA-------EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA  950 (998)
Q Consensus       906 DqsiS~tl~~~-------~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~  950 (998)
                      |||||+|||++       ++++++|.++|++|||+|||| +||+|++++.+.
T Consensus       469 DqsiS~tln~~~~~~~~~~~~~~~v~~~~~~Awk~GlKT-~Yy~~Sr~~~~~  519 (525)
T d1rlra2         469 DQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNTRDDIDD  519 (525)
T ss_dssp             SSCBCCCEEECGGGSGGGCCCHHHHHHHHHHHHHTTCCE-ECCEEECCCHHH
T ss_pred             cHHHhCccCCCccccCCCCCCHHHHHHHHHHHHHhCCCc-cCcCcChhhhhh
Confidence            99999999983       479999999999999999998 899999876544

>d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide reductase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: R1 subunit of ribonucleotide reductase, C-terminal domain
domain: R1 subunit of ribonucleotide reductase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=6.5e-52  Score=489.78  Aligned_cols=233  Identities=20%  Similarity=0.346  Sum_probs=196.0

Q ss_pred             CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCccCcCcccccccCCCC
Q psy1689         587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYDMWGVTP  665 (998)
Q Consensus       587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G-~fp~f~~s~~~~g~l~~d~~~~~~  665 (998)
                      .+|+||||+|||||+|++||+||+|+||++++++||++|+++|+++|++||+|+| +||.|++|+|++|.++-+..... 
T Consensus       289 ~~R~iGlGv~Gla~~L~~lgi~Y~S~ea~~~~~~i~~~i~~~a~~aS~eLAkerG~~f~~f~~s~~~~g~~~~~~~~~~-  367 (525)
T d1peqa2         289 ASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDD-  367 (525)
T ss_dssp             HHCCEEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTGGGSHHHHSHHHHHHHSSC-
T ss_pred             HhhhhccCcchHHHHHHHcCCccccccchhhhHHHHHHHHHHHHHHHHHHHHhhCCCCcccccChhhcCchhhhhhhhh-
Confidence            3688999999999999999999999999999999999999999999999999999 99999999999997642211000 


Q ss_pred             ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689         666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII  745 (998)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  745 (998)
                           |                          .|.-               ...                       ...
T Consensus       368 -----~--------------------------~~~~---------------~~~-----------------------~~~  378 (525)
T d1peqa2         368 -----W--------------------------QPKT---------------AKV-----------------------RAL  378 (525)
T ss_dssp             -----C--------------------------SCSS---------------HHH-----------------------HHH
T ss_pred             -----c--------------------------cccc---------------cch-----------------------hhh
Confidence                 0                          0100               000                       000


Q ss_pred             HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689         746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS  825 (998)
Q Consensus       746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a  825 (998)
                      ..                         ..+..+...++|.+||+.+++||+|||+++++|||+|||+|+|+|+||||+|+
T Consensus       379 ~~-------------------------~~~~~~~~~~~w~~l~~~i~~~G~rNs~l~aiaPt~s~s~~~~~t~gieP~~~  433 (525)
T d1peqa2         379 FA-------------------------RSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVA  433 (525)
T ss_dssp             HH-------------------------HHTCCCCCHHHHHHHHHHHHHHCCSCSCCBCBCCCCTHHHHHTCCSSSSCCSC
T ss_pred             cc-------------------------ccCCCcchHHHHHHHHHHHHhhhhhhhhhhccccccccchhhccccccccchh
Confidence            00                         00111225789999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccc-cceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCc
Q psy1689         826 NIYSRRVLS-GEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF  904 (998)
Q Consensus       826 ~~~~r~~~~-G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~  904 (998)
                      ++|+|+... |++..+                               .+++|+++|++|+||+||+|++||+|||++|||
T Consensus       434 ~~~~r~~~~~g~~~~~-------------------------------~~~l~~~~k~vf~ta~ei~~~~~v~~~a~~Q~~  482 (525)
T d1peqa2         434 KIEIRKEGKTGRVYYP-------------------------------APFMTNENLDMYQDAYDIGPEKIIDTYAEATRH  482 (525)
T ss_dssp             SEEEECCSTTSCEEEE-------------------------------CTTCCTTSGGGCCCHHHHCHHHHHHHHHHHHTT
T ss_pred             hheeEEecCCceEEee-------------------------------CCCCCHHHHhhcCCcccCCHHHHHHHHHHHhcc
Confidence            999998643 444433                               456788899999999999999999999999999


Q ss_pred             ccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCc
Q psy1689         905 IDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKP  946 (998)
Q Consensus       905 iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~  946 (998)
                      ||||||+||||| +++++||.++|++|||+|||| +||+|+++
T Consensus       483 iDqsiS~tin~p~~~~~~dv~~~~~~awk~GlKt-lYY~r~~~  524 (525)
T d1peqa2         483 VDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS-LYYIRLRQ  524 (525)
T ss_dssp             CSSCBCCCEEECTTCCHHHHHHHHHHHHHHTCCE-ECCEEECC
T ss_pred             ccHhhccccccCCCCCHHHHHHHHHHHHHcCCCc-eeeccccc
Confidence            999999999999 899999999999999999999 89999876

>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide reductase {Lactobacillus leichmannii [TaxId: 28039]}

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: B12-dependent (class II) ribonucleotide reductase
domain: B12-dependent (class II) ribonucleotide reductase
species: Lactobacillus leichmannii [TaxId: 28039]

Probab=99.97  E-value=4.2e-34  Score=348.19  Aligned_cols=160  Identities=12%  Similarity=0.095  Sum_probs=132.5

Q ss_pred             HHHHHHHHHhhcc-cccceecCCCCcchhhhcCCCccccccccceEEEEccccceEEechhHHHHHHHcCCChHHHHHHH
Q psy1689         784 WAALKEKIAKHGV-RNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQL  862 (998)
Q Consensus       784 W~~L~~~i~~~G~-RNs~~~aiAPTgSiS~i~g~s~giEP~~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i  862 (998)
                      |+..++.++++|+ ||+++|+||||||||+|+|||+||||+||++|+|++..|    .|..+.+.|++.|++.++   ..
T Consensus       523 ~~~~~~~~~~~Gi~r~~~~ttiaPTGTiS~i~g~SsGIeP~~a~~y~R~v~~~----~~dpl~~~l~~~g~~~e~---~~  595 (721)
T d1l1la_         523 VKADQDYSKTLGCNESIKHTTVKPSGTVAKLAGASEGMHFHYGAYLIQRIRFQ----DSDPLLPALKACGYRTEA---DI  595 (721)
T ss_dssp             HHHHHHHHHHHTCCCCSCCEEBCCCHHHHHHHTCCCTTCCBSCSEEEEEEEEE----TTCTHHHHHHHTTCEEEE---CS
T ss_pred             HHHHHHHHHHhCCCcccceeeecCCCceeeECCcccccCccccceeEEEeecC----CCChHHHHHHHhCCcchH---Hh
Confidence            3455667788998 666899999999999999999999999999999999765    477788899999998653   22


Q ss_pred             HhcCCccccCC-CCChhhHhhhcccCCCChHhHHHHHHHhCC-cccccccceeecCCCCHHHHHHHHHHHHHcCCcEEEE
Q psy1689         863 IVNNGSIQDIE-GIPQKLKDLYKTVWEIPQKTVLDMAADRGA-FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMY  940 (998)
Q Consensus       863 ~~~~Gsv~~i~-~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~-~iDqsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~~y  940 (998)
                      ..+++.+...+ .+|+..+++|+||+||++.+||+|||++|+ ||||+||+|||+|+-..+++.. |++||+.||||+|+
T Consensus       596 ~~~~~~vv~~p~~~~~~~~~~f~ta~di~~~~hl~~~a~~Q~~wvd~~iSkTin~p~~e~~~v~~-yl~~~~~g~kGitv  674 (721)
T d1l1la_         596 YTENTTCVEFPIKAVGADNPNFASAGTVSIAEQFATQAFLQTYWSDNAVSCTITFQDSEGDQVES-LLRQYRFITKSTSL  674 (721)
T ss_dssp             SSTTEEEEEEEEECTTTTCTTCCBTTTSCHHHHHHHHHHHHHHTCSSCBCCEEEECGGGGGGHHH-HHHHTTTTCSEEEE
T ss_pred             ccCCCceEeccccCccccccceeEcCcCCHHHHHHHHHHhccccccccCeeEEEECCchHHHHHH-HHHHHhcCCcEEEE
Confidence            33455554443 578888899999999999999999999999 6999999999999433477855 99999999999999


Q ss_pred             --EecCCccccch
Q psy1689         941 --YLRTKPAANAI  951 (998)
Q Consensus       941 --Y~r~~~~~~~~  951 (998)
                        |++++-.+.|.
T Consensus       675 l~y~d~sy~qaP~  687 (721)
T d1l1la_         675 LPYFGGSLQQAPK  687 (721)
T ss_dssp             EECCCCCCTTCSE
T ss_pred             EeecCCCccCCCc
Confidence              98877666553

>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase NRDD subunit {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: Class III anaerobic ribonucleotide reductase NRDD subunit
domain: Class III anaerobic ribonucleotide reductase NRDD subunit
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.61  E-value=0.44  Score=53.93  Aligned_cols=46  Identities=7%  Similarity=-0.062  Sum_probs=37.8

Q ss_pred             cCCChHHHHHHHHHhCCccccccceeEeecC--CCHHHHHHHHHHHHH
Q psy1689         483 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAE--INYAKMSSMHFHGWK  528 (998)
Q Consensus       483 ~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~--~t~~~i~~~~~~Awk  528 (998)
                      .++++.+.|+.++..|++.+-+.-.-+++++  .+.+.+.++-..+.+
T Consensus       457 ~~~d~~eki~~e~~~~~~~tGG~I~hv~l~e~~~n~~a~~~lv~~~~~  504 (561)
T d1hk8a_         457 ENITPFEKISREAPYHFIATGGHISYVELPDMKNNLKGLEAVWDYAAQ  504 (561)
T ss_dssp             SCCCHHHHHHHHHHHHTTCTTBCCEEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHhhcccccccCceEEEEEECCCCcCCHHHHHHHHHHHHh
Confidence            5588889999999999999999888999986  466677777666655