Psyllid ID: psy17165

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MRTGIQRILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLLDNEKGNELLYMSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKAM
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHEccccHHHHccHHHHHHHHcccccccccccccHHHHHcEEEccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccEEccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccHHHHHHHHHHHHHHHHHHHEEEEHHcccEEEEEcccccEEEEEEEEcccccccccHHHHHHHHHHHHHHEEcccHHHHHHHHHHHcccccHHHHHHHccHHHHHcEEccccEEEEccccccHHccccEEEEcccccc
Coil and Loop (DISEMBL)
MRTGIQRILLLteddavftdvrasgnyelfdQEISLSMHRIGvslldnekgneLLYMSITRIgvggaagaasrITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVsgvvtkpiegakddgveGFVKGVGKAM
Flexible Loop (DISEMBL)
MRTGIQRIlllteddavftDVRASGNYELFDQEISLSMHRIGVSLLDNEKGNELLYMSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVSGVvtkpiegakddgvegfvkgvgkam
Low Complexity Region (SEG)
MRTGIQRILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLLDNEKGNELLYMSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYqrrrrlqtarqatlHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKAM
Disordered region (IsUnstruct)
****IQRILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLLDNEKGNELLYMSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKPIEGA****************
Disordered Region (DISOPRED)
***GIQRILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLLDNEKGNELLYMSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQR****************AASGKGLVLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKAM
Disordered Region (DISEMBL)
MRTGIQRILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLLDNEKGNELLYMSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKAM
Disordered Region (DISPRO)
**TGIQRILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLLDNEKGNELLYMSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKAM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTGIQRILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLLDNEKGNELLYMSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKAM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
Q8BX70	3748	Vacuolar protein sorting-	yes	N/A	0.582	0.023	0.561	7e-24
Q709C8	3753	Vacuolar protein sorting-	yes	N/A	0.582	0.023	0.561	7e-24
Q5H8C4	3166	Vacuolar protein sorting-	no	N/A	0.529	0.025	0.543	1e-19
Q96RL7	3174	Vacuolar protein sorting-	no	N/A	0.529	0.025	0.543	1e-19
Q9BGZ0	619	Vacuolar protein sorting-	N/A	N/A	0.529	0.129	0.543	7e-18
Q54LB8	3373	Putative vacuolar protein	yes	N/A	0.622	0.027	0.421	4e-13
Q54LN2	4592	Putative vacuolar protein	no	N/A	0.615	0.020	0.393	4e-12
Q07878	3144	Vacuolar protein sorting-	yes	N/A	0.801	0.038	0.313	6e-09
Q555C6	6061	Putative vacuolar protein	no	N/A	0.569	0.014	0.333	6e-09
Q5THJ4	4387	Vacuolar protein sorting-	no	N/A	0.562	0.019	0.333	2e-07

>sp|Q8BX70|VP13C_MOUSE Vacuolar protein sorting-associated protein 13C OS=Mus musculus GN=Vps13c PE=1 SV=2

 Score =  109 bits (272), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 66/89 (74%), Gaps = 1/89 (1%)

Query: 64   VGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQAT-LHEDLAASGKGLVLGFVQ 122
            VGGAAG  SRITG++GKG+AA+T DKEYQ++RR +  RQ     + LA  GKG + G V 
Sbjct: 3466 VGGAAGVVSRITGSVGKGLAAITMDKEYQQKRREEMGRQPKDFGDSLARGGKGFLRGVVG 3525

Query: 123  GVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
            GV+G++TKP+EGAK +G  GF KG+GK +
Sbjct: 3526 GVTGIITKPVEGAKKEGAAGFFKGIGKGL 3554

Mus musculus (taxid: 10090)

>sp|Q709C8|VP13C_HUMAN Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1

 Score =  109 bits (272), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 67/89 (75%), Gaps = 1/89 (1%)

Query: 64   VGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQA-TLHEDLAASGKGLVLGFVQ 122
            VGGAAG  SRITG++GKG+AA+T DKEYQ++RR + +RQ     + LA  GKG + G V 
Sbjct: 3471 VGGAAGVVSRITGSVGKGLAAITMDKEYQQKRREELSRQPRDFGDSLARGGKGFLRGVVG 3530

Query: 123  GVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
            GV+G++TKP+EGAK +G  GF KG+GK +
Sbjct: 3531 GVTGIITKPVEGAKKEGAAGFFKGIGKGL 3559

Homo sapiens (taxid: 9606)

>sp|Q5H8C4|VP13A_MOUSE Vacuolar protein sorting-associated protein 13A OS=Mus musculus GN=Vps13a PE=1 SV=1

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)

Query: 72   SRITGAMGKGIAALTFDKEYQRRRRLQTARQ-ATLHEDLAASGKGLVLGFVQGVSGVVTK 130
            S+IT AM KG+AA+T D++YQ++RR    +Q A L E +   GKGLV GFV G++G+VTK
Sbjct: 2914 SKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTK 2973

Query: 131  PIEGAKDDGVEGFVKGVGKAM 151
            PI+GA+ +G  GF KGVGK +
Sbjct: 2974 PIKGAQKEGAAGFFKGVGKGL 2994

May play a role in the control of protein cycling through the trans-Golgi network to early and late endosomes, lysosomes and plasma membrane.

Mus musculus (taxid: 10090)

>sp|Q96RL7|VP13A_HUMAN Vacuolar protein sorting-associated protein 13A OS=Homo sapiens GN=VPS13A PE=1 SV=2

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 59/81 (72%), Gaps = 1/81 (1%)

Query: 72   SRITGAMGKGIAALTFDKEYQRRRRLQTARQ-ATLHEDLAASGKGLVLGFVQGVSGVVTK 130
            S+ITGAM KG+AA+T D++YQ++RR    +Q A   E +   GKGLV GFV G++G+VTK
Sbjct: 2922 SKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTK 2981

Query: 131  PIEGAKDDGVEGFVKGVGKAM 151
            PI+GA+  G  GF KGVGK +
Sbjct: 2982 PIKGAQKGGAAGFFKGVGKGL 3002

May play a role in the control of protein cycling through the trans-Golgi network to early and late endosomes, lysosomes and plasma membrane.

Homo sapiens (taxid: 9606)

>sp|Q9BGZ0|VP13A_MACFA Vacuolar protein sorting-associated protein 13A (Fragment) OS=Macaca fascicularis GN=VPS13A PE=2 SV=1

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)

Query: 72  SRITGAMGKGIAALTFDKEYQRRRRLQTARQ-ATLHEDLAASGKGLVLGFVQGVSGVVTK 130
           S+ITGAM KG+AA+T D++YQ++RR    +Q A   E +   GKGLV GFV G++G+VTK
Sbjct: 448 SKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTK 507

Query: 131 PIEGAKDDGVEGFVKGVGKAM 151
           PI+GA+ +G  GF KGVGK +
Sbjct: 508 PIKGAQKEGAAGFFKGVGKGL 528

May play a role in the control of protein cycling through the trans-Golgi network to early and late endosomes, lysosomes and plasma membrane.

Macaca fascicularis (taxid: 9541)

>sp|Q54LB8|VP13A_DICDI Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 1/95 (1%)

Query: 58   SITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQAT-LHEDLAASGKGL 116
            S  +  V G     S++TG +G G+A L+FD++Y + R+L  AR+ + + E LA  G GL
Sbjct: 3094 SFVKNSVFGTFNTLSKLTGTLGTGVATLSFDEKYLQERKLHQARKPSHVGEGLAMGGIGL 3153

Query: 117  VLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
              G +QG++G+VTKP+EGAK  G  GF KG+ + +
Sbjct: 3154 GRGILQGITGIVTKPVEGAKKGGFAGFAKGLAQGV 3188

Required for sorting signal-dependent recycling of membrane proteins between an endocytic compartment and the TGN.

Dictyostelium discoideum (taxid: 44689)

>sp|Q54LN2|VP13D_DICDI Putative vacuolar protein sorting-associated protein 13D OS=Dictyostelium discoideum GN=vps13D PE=3 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 1/94 (1%)

Query: 57   MSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQAT-LHEDLAASGKG 115
            +S+ +  V G     S+++  +GKG+A L+FD +Y R R+    ++A  L E +    K 
Sbjct: 4325 ISLVKNSVYGLFNTLSKLSNTVGKGVAILSFDDQYLRNRQRSRQKKAKHLGEGVVYGFKS 4384

Query: 116  LVLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGK 149
            L  G + GV+GVVTKPIEGA    +EGF KG+ +
Sbjct: 4385 LGKGVIDGVTGVVTKPIEGAIKGSIEGFAKGMAQ 4418

Required for sorting signal-dependent recycling of membrane proteins between an endocytic compartment and the TGN.

Dictyostelium discoideum (taxid: 44689)

>sp|Q07878|VPS13_YEAST Vacuolar protein sorting-associated protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS13 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 13/134 (9%)

Query: 23   ASGNYELFDQEISLSM-----HRIGVSLLDNEKGNELLYMSITRIGVGGAAGAASRITGA 77
            +SG ++LF +     M       IG+ L    KG     +S  +  V G + + S+ TG+
Sbjct: 2852 SSGVWDLFYEPYQGYMMNDRPQEIGIHL---AKGG----LSFAKKTVFGLSDSMSKFTGS 2904

Query: 78   MGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKD 137
            M KG++ +T D E+QR RRLQ          LA S +        G+SG+   P +  + 
Sbjct: 2905 MAKGLS-VTQDLEFQRVRRLQQRINKNNRNALANSAQSFASTLGSGLSGIALDPYKAMQK 2963

Query: 138  DGVEGFVKGVGKAM 151
            +G  GF+KG+GK +
Sbjct: 2964 EGAAGFLKGLGKGI 2977

Required for sorting signal-dependent recycling of membrane proteins between an endocytic compartment and the TGN.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q555C6|VP13B_DICDI Putative vacuolar protein sorting-associated protein 13B OS=Dictyostelium discoideum GN=vps13B PE=3 SV=1

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 66   GAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQAT-LHEDLAASGKGLVLGFVQGV 124
             AA ++S++ G +  G A  + D+ Y RRR  +   +A  +        KG  +G + GV
Sbjct: 5776 AAANSSSKLFGTISSGFATWSLDETYLRRRDAEEKVKAKHIAHGFYLGSKGFAMGIIDGV 5835

Query: 125  SGVVTKPIEGAKDDGVEGFVKGVGKAM 151
             G+V  P+ GA  +G+ GF KG GK +
Sbjct: 5836 FGIVEHPVRGAMQEGLLGFFKGCGKGV 5862

Required for sorting signal-dependent recycling of membrane proteins between an endocytic compartment and the TGN.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5THJ4|VP13D_HUMAN Vacuolar protein sorting-associated protein 13D OS=Homo sapiens GN=VPS13D PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 66   GAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVS 125
            G + +A++  G +  G+   T D  +Q  R       AT  E L A   GL  G + G++
Sbjct: 4103 GVSNSAAKFAGTLSDGLGK-TMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLT 4161

Query: 126  GVVTKPIEGAKDD-GVEGFVKGVGKAM 151
             V+T  +EG K + GV GF+ G+GK +
Sbjct: 4162 SVITSTVEGVKTEGGVSGFISGLGKGL 4188

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
380023142	3245	PREDICTED: LOW QUALITY PROTEIN: vacuolar	0.582	0.027	0.707	5e-27
345486512	3257	PREDICTED: LOW QUALITY PROTEIN: vacuolar	0.582	0.027	0.685	7e-27
328777858	3242	PREDICTED: vacuolar protein sorting-asso	0.582	0.027	0.696	1e-26
195332167	2327	GM20965 [Drosophila sechellia] gi|194124	0.569	0.036	0.674	2e-26
195474430	3214	GE19134 [Drosophila yakuba] gi|194175595	0.569	0.026	0.662	3e-26
194863770	3255	GG23288 [Drosophila erecta] gi|190662472	0.569	0.026	0.662	3e-26
161076367	3321	vacuolar protein sorting 13, isoform A [	0.569	0.025	0.662	3e-26
195581264	964	GD10493 [Drosophila simulans] gi|1941924	0.569	0.089	0.674	3e-26
195121438	3313	GI20376 [Drosophila mojavensis] gi|19391	0.576	0.026	0.670	3e-26
194755609	3328	GF13185 [Drosophila ananassae] gi|190621	0.576	0.026	0.670	3e-26

>gi|380023142|ref|XP_003695386.1| PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13C-like [Apis florea]

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 63/89 (70%), Positives = 71/89 (79%), Gaps = 1/89 (1%)

Query: 64   VGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQ-ATLHEDLAASGKGLVLGFVQ 122
            VGG AGA S+ITGAMGKGIAALTFDK+YQR+R+ Q   Q ATL E LA SGKGLV+G   
Sbjct: 2982 VGGMAGAVSKITGAMGKGIAALTFDKDYQRKRQEQLNIQPATLQEGLARSGKGLVMGVFD 3041

Query: 123  GVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
            GV+GVV KPI GAK++GVEGF KG GK M
Sbjct: 3042 GVTGVVMKPISGAKEEGVEGFFKGFGKGM 3070

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486512|ref|XP_001603890.2| PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13C-like [Nasonia vitripennis]

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 61/89 (68%), Positives = 71/89 (79%), Gaps = 1/89 (1%)

Query: 64   VGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQ-ATLHEDLAASGKGLVLGFVQ 122
            VGG AGA S+ITGAMGKG+AALTFDK+YQR+R+ Q  +Q A L E LA SGKGLV+G V 
Sbjct: 2994 VGGMAGAVSKITGAMGKGLAALTFDKDYQRKRQEQLNKQPANLQEGLARSGKGLVMGVVD 3053

Query: 123  GVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
            G+SGVV KP  GAK++GVEGF KG GK M
Sbjct: 3054 GISGVVMKPYSGAKEEGVEGFFKGFGKGM 3082

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777858|ref|XP_001122625.2| PREDICTED: vacuolar protein sorting-associated protein 13C-like [Apis mellifera]

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/89 (69%), Positives = 71/89 (79%), Gaps = 1/89 (1%)

Query: 64   VGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQ-ATLHEDLAASGKGLVLGFVQ 122
            VGG AGA S+ITGAMGKGIAALTFD++YQR+R+ Q   Q ATL E LA SGKGLV+G   
Sbjct: 2978 VGGMAGAVSKITGAMGKGIAALTFDRDYQRKRQEQLNIQPATLQEGLARSGKGLVMGVFD 3037

Query: 123  GVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
            GV+GVV KPI GAK++GVEGF KG GK M
Sbjct: 3038 GVTGVVMKPISGAKEEGVEGFFKGFGKGM 3066

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195332167|ref|XP_002032770.1| GM20965 [Drosophila sechellia] gi|194124740|gb|EDW46783.1| GM20965 [Drosophila sechellia]

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/89 (67%), Positives = 73/89 (82%), Gaps = 3/89 (3%)

Query: 64   VGGAAGAASRITGAMGKGIAALTFDKEYQRRRR--LQTARQATLHEDLAASGKGLVLGFV 121
            VGGAAGA S+ITGAMGKG+AALTFD++YQ++RR  +Q  +    HE LA S KGLV+GFV
Sbjct: 2051 VGGAAGAVSKITGAMGKGLAALTFDEDYQKKRRQGIQN-KPKNFHEGLARSSKGLVMGFV 2109

Query: 122  QGVSGVVTKPIEGAKDDGVEGFVKGVGKA 150
             GVSGVVTKP+ GA+D+GVEGF KG+GK 
Sbjct: 2110 DGVSGVVTKPVIGARDNGVEGFFKGLGKG 2138

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195474430|ref|XP_002089494.1| GE19134 [Drosophila yakuba] gi|194175595|gb|EDW89206.1| GE19134 [Drosophila yakuba]

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/89 (66%), Positives = 73/89 (82%), Gaps = 3/89 (3%)

Query: 64   VGGAAGAASRITGAMGKGIAALTFDKEYQRRRR--LQTARQATLHEDLAASGKGLVLGFV 121
            VGGAAGA S+ITGAMGKG+AALTFD++YQ++RR  +Q  +    HE LA S KGLV+GFV
Sbjct: 2938 VGGAAGAVSKITGAMGKGLAALTFDEDYQKKRRQGIQN-KPKNFHEGLARSSKGLVMGFV 2996

Query: 122  QGVSGVVTKPIEGAKDDGVEGFVKGVGKA 150
             GV+GVVTKP+ GA+D+GVEGF KG+GK 
Sbjct: 2997 DGVTGVVTKPVTGARDNGVEGFFKGLGKG 3025

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194863770|ref|XP_001970605.1| GG23288 [Drosophila erecta] gi|190662472|gb|EDV59664.1| GG23288 [Drosophila erecta]

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/89 (66%), Positives = 73/89 (82%), Gaps = 3/89 (3%)

Query: 64   VGGAAGAASRITGAMGKGIAALTFDKEYQRRRR--LQTARQATLHEDLAASGKGLVLGFV 121
            VGGAAGA S+ITGAMGKG+AALTFD++YQ++RR  +Q  +    HE LA S KGLV+GFV
Sbjct: 2979 VGGAAGAVSKITGAMGKGLAALTFDEDYQKKRRQGIQN-KPKNFHEGLARSSKGLVMGFV 3037

Query: 122  QGVSGVVTKPIEGAKDDGVEGFVKGVGKA 150
             GV+GVVTKP+ GA+D+GVEGF KG+GK 
Sbjct: 3038 DGVTGVVTKPVTGARDNGVEGFFKGLGKG 3066

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161076367|ref|NP_610299.2| vacuolar protein sorting 13, isoform A [Drosophila melanogaster] gi|442622792|ref|NP_001260781.1| vacuolar protein sorting 13, isoform B [Drosophila melanogaster] gi|157400214|gb|AAF59228.2| vacuolar protein sorting 13, isoform A [Drosophila melanogaster] gi|440214175|gb|AGB93314.1| vacuolar protein sorting 13, isoform B [Drosophila melanogaster]

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/89 (66%), Positives = 73/89 (82%), Gaps = 3/89 (3%)

Query: 64   VGGAAGAASRITGAMGKGIAALTFDKEYQRRRR--LQTARQATLHEDLAASGKGLVLGFV 121
            VGGAAGA S+ITGAMGKG+AALTFD++YQ++RR  +Q  +    HE LA S KGLV+GFV
Sbjct: 3045 VGGAAGAVSKITGAMGKGLAALTFDEDYQKKRRQGIQN-KPKNFHEGLARSSKGLVMGFV 3103

Query: 122  QGVSGVVTKPIEGAKDDGVEGFVKGVGKA 150
             GV+GVVTKP+ GA+D+GVEGF KG+GK 
Sbjct: 3104 DGVTGVVTKPVTGARDNGVEGFFKGLGKG 3132

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195581264|ref|XP_002080454.1| GD10493 [Drosophila simulans] gi|194192463|gb|EDX06039.1| GD10493 [Drosophila simulans]

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/89 (67%), Positives = 73/89 (82%), Gaps = 3/89 (3%)

Query: 64  VGGAAGAASRITGAMGKGIAALTFDKEYQRRRR--LQTARQATLHEDLAASGKGLVLGFV 121
           VGGAAGA S+ITGAMGKG+AALTFD++YQ++RR  +Q  +    HE LA S KGLV+GFV
Sbjct: 688 VGGAAGAVSKITGAMGKGLAALTFDEDYQKKRRQGIQN-KPKNFHEGLARSSKGLVMGFV 746

Query: 122 QGVSGVVTKPIEGAKDDGVEGFVKGVGKA 150
            GVSGVVTKP+ GA+D+GVEGF KG+GK 
Sbjct: 747 DGVSGVVTKPVIGARDNGVEGFFKGLGKG 775

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195121438|ref|XP_002005227.1| GI20376 [Drosophila mojavensis] gi|193910295|gb|EDW09162.1| GI20376 [Drosophila mojavensis]

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/88 (67%), Positives = 70/88 (79%), Gaps = 1/88 (1%)

Query: 64   VGGAAGAASRITGAMGKGIAALTFDKEYQR-RRRLQTARQATLHEDLAASGKGLVLGFVQ 122
            VGGAAGA S+ITGAMGKG+AALTFD +YQ+ RRR    +    HE LA SGKGLV+GF  
Sbjct: 3034 VGGAAGAMSKITGAMGKGLAALTFDDKYQKKRRRGMHNKPKNFHEGLARSGKGLVMGFYD 3093

Query: 123  GVSGVVTKPIEGAKDDGVEGFVKGVGKA 150
            GV+GVVTKP+ GA+D+GVEGF KG+GK 
Sbjct: 3094 GVTGVVTKPVAGARDEGVEGFFKGLGKG 3121

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194755609|ref|XP_001960076.1| GF13185 [Drosophila ananassae] gi|190621374|gb|EDV36898.1| GF13185 [Drosophila ananassae]

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/88 (67%), Positives = 70/88 (79%), Gaps = 1/88 (1%)

Query: 64   VGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQT-ARQATLHEDLAASGKGLVLGFVQ 122
            VGGAAGA S+ITGAMGKG+AALTFD+EYQR+RR     +    HE LA S KGLV+GFV 
Sbjct: 3051 VGGAAGAMSKITGAMGKGLAALTFDEEYQRKRRQGIHNKPKNFHEGLARSSKGLVMGFVD 3110

Query: 123  GVSGVVTKPIEGAKDDGVEGFVKGVGKA 150
            GV+GVVTKP+ GA++ GVEGF KG+GK 
Sbjct: 3111 GVTGVVTKPVSGAREHGVEGFFKGLGKG 3138

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
FB|FBgn0033194	3321	Vps13 "Vacuolar protein sortin	0.569	0.025	0.632	2.8e-31
UNIPROTKB|E1C549	3008	E1C549 "Uncharacterized protei	0.582	0.029	0.528	1.5e-26
MGI|MGI:2444207	3748	Vps13c "vacuolar protein sorti	0.582	0.023	0.516	1.9e-26
UNIPROTKB|Q96RL7	3174	VPS13A "Vacuolar protein sorti	0.582	0.027	0.516	5.7e-26
UNIPROTKB|F1SIL5	3172	VPS13A "Uncharacterized protei	0.582	0.027	0.505	1.5e-25
UNIPROTKB|D4A899	3062	Vps13a "Protein Vps13a" [Rattu	0.582	0.028	0.505	7.5e-25
MGI|MGI:2444304	3166	Vps13a "vacuolar protein sorti	0.582	0.027	0.505	8e-25
WB|WBGene00011629	3212	T08G11.1 [Caenorhabditis elega	0.582	0.027	0.550	3.9e-23
RGD|1311340	1446	Vps13a "vacuolar protein sorti	0.582	0.060	0.387	1e-15
DICTYBASE|DDB_G0286545	4592	vps13D "vacuolar protein sorti	0.629	0.020	0.343	1.8e-12

FB|FBgn0033194 Vps13 "Vacuolar protein sorting 13" [Drosophila melanogaster (taxid:7227)]

 Score = 271 (100.5 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
 Identities = 55/87 (63%), Positives = 65/87 (74%)

Query:    64 VGGAAGAASRITGAMGKGIAALTFDKEYXXXXXXXXXXX-XXXHEDLAASGKGLVLGFVQ 122
             VGGAAGA S+ITGAMGKG+AALTFD++Y               HE LA S KGLV+GFV 
Sbjct:  3045 VGGAAGAVSKITGAMGKGLAALTFDEDYQKKRRQGIQNKPKNFHEGLARSSKGLVMGFVD 3104

Query:   123 GVSGVVTKPIEGAKDDGVEGFVKGVGK 149
             GV+GVVTKP+ GA+D+GVEGF KG+GK
Sbjct:  3105 GVTGVVTKPVTGARDNGVEGFFKGLGK 3131

GO:0006623 "protein targeting to vacuole" evidence=ISS

UNIPROTKB|E1C549 E1C549 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 234 (87.4 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
 Identities = 47/89 (52%), Positives = 58/89 (65%)

Query:    64 VGGAAGAASRITGAMGKGIAALTFDKEYXXXXXXXXXXX-XXXHEDLAASGKGLVLGFVQ 122
             VGG AGAASRITGAM KG+AA+T D++Y                E +   GKGLV GFV 
Sbjct:  2896 VGGLAGAASRITGAMAKGVAAITMDEDYQQKRREAMNKQPTGLREGITRGGKGLVSGFVS 2955

Query:   123 GVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
             G++G+VTKPI GA+ +G  GF KGVGK +
Sbjct:  2956 GITGIVTKPIRGAQKEGAAGFFKGVGKGL 2984

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0035176 "social behavior" evidence=IEA

MGI|MGI:2444207 Vps13c "vacuolar protein sorting 13C (yeast)" [Mus musculus (taxid:10090)]

 Score = 229 (85.7 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
 Identities = 46/89 (51%), Positives = 58/89 (65%)

Query:    64 VGGAAGAASRITGAMGKGIAALTFDKEYXXXXXXXXXXXXXXHED-LAASGKGLVLGFVQ 122
             VGGAAG  SRITG++GKG+AA+T DKEY                D LA  GKG + G V 
Sbjct:  3466 VGGAAGVVSRITGSVGKGLAAITMDKEYQQKRREEMGRQPKDFGDSLARGGKGFLRGVVG 3525

Query:   123 GVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
             GV+G++TKP+EGAK +G  GF KG+GK +
Sbjct:  3526 GVTGIITKPVEGAKKEGAAGFFKGIGKGL 3554

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q96RL7 VPS13A "Vacuolar protein sorting-associated protein 13A" [Homo sapiens (taxid:9606)]

 Score = 229 (85.7 bits), Expect = 5.7e-26, Sum P(2) = 5.7e-26
 Identities = 46/89 (51%), Positives = 58/89 (65%)

Query:    64 VGGAAGAASRITGAMGKGIAALTFDKEYXXXXXXXXXXX-XXXHEDLAASGKGLVLGFVQ 122
             VGG AGAAS+ITGAM KG+AA+T D++Y                E +   GKGLV GFV 
Sbjct:  2914 VGGLAGAASKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVS 2973

Query:   123 GVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
             G++G+VTKPI+GA+  G  GF KGVGK +
Sbjct:  2974 GITGIVTKPIKGAQKGGAAGFFKGVGKGL 3002

GO:0008219 "cell death" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0035176 "social behavior" evidence=IEA

GO:0005622 "intracellular" evidence=NAS

GO:0006895 "Golgi to endosome transport" evidence=NAS

GO:0008104 "protein localization" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1SIL5 VPS13A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 226 (84.6 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
 Identities = 45/89 (50%), Positives = 58/89 (65%)

Query:    64 VGGAAGAASRITGAMGKGIAALTFDKEYXXXXXXXXXXX-XXXHEDLAASGKGLVLGFVQ 122
             VGG AGAAS+IT AM KG+AA+T D++Y                E +   GKGLV GFV 
Sbjct:  2911 VGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVS 2970

Query:   123 GVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
             G++G+VTKPI+GA+ +G  GF KGVGK +
Sbjct:  2971 GITGIVTKPIKGAQKEGAAGFFKGVGKGL 2999

GO:0035176 "social behavior" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

UNIPROTKB|D4A899 Vps13a "Protein Vps13a" [Rattus norvegicus (taxid:10116)]

 Score = 226 (84.6 bits), Expect = 7.5e-25, Sum P(2) = 7.5e-25
 Identities = 45/89 (50%), Positives = 58/89 (65%)

Query:    64 VGGAAGAASRITGAMGKGIAALTFDKEYXXXXXXXXXXX-XXXHEDLAASGKGLVLGFVQ 122
             VGG AGAAS+IT AM KG+AA+T D++Y                E +   GKGLV GFV 
Sbjct:  2907 VGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSGFVS 2966

Query:   123 GVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
             G++G+VTKPI+GA+ +G  GF KGVGK +
Sbjct:  2967 GITGIVTKPIKGAQKEGAAGFFKGVGKGL 2995

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0035176 "social behavior" evidence=IEA

MGI|MGI:2444304 Vps13a "vacuolar protein sorting 13A (yeast)" [Mus musculus (taxid:10090)]

 Score = 226 (84.6 bits), Expect = 8.0e-25, Sum P(2) = 8.0e-25
 Identities = 45/89 (50%), Positives = 58/89 (65%)

Query:    64 VGGAAGAASRITGAMGKGIAALTFDKEYXXXXXXXXXXX-XXXHEDLAASGKGLVLGFVQ 122
             VGG AGAAS+IT AM KG+AA+T D++Y                E +   GKGLV GFV 
Sbjct:  2906 VGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSGFVS 2965

Query:   123 GVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
             G++G+VTKPI+GA+ +G  GF KGVGK +
Sbjct:  2966 GITGIVTKPIKGAQKEGAAGFFKGVGKGL 2994

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0007399 "nervous system development" evidence=IMP

GO:0007626 "locomotory behavior" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0031045 "dense core granule" evidence=IDA

GO:0035176 "social behavior" evidence=IMP

WB|WBGene00011629 T08G11.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 225 (84.3 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
 Identities = 49/89 (55%), Positives = 58/89 (65%)

Query:    64 VGGAAGAASRITGAMGKGIAALTFDKEYXXXXXXXXXXXXXXH-EDLAASGKGLVLGFVQ 122
             VGGAAGA  RITG +GKG+AALTFD +Y                E +A   KGL +G V 
Sbjct:  2953 VGGAAGAVGRITGTVGKGVAALTFDDDYMKKRQEDLNRKPQSFGEGMARGLKGLGMGVVG 3012

Query:   123 GVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
             G++GVVTKPIEGAK +G  GFVKGVGK +
Sbjct:  3013 GITGVVTKPIEGAKQEGGFGFVKGVGKGL 3041

GO:0008104 "protein localization" evidence=IEA

RGD|1311340 Vps13a "vacuolar protein sorting 13 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 132 (51.5 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
 Identities = 38/98 (38%), Positives = 51/98 (52%)

Query:    64 VGGAAGAASRITGAMGKGIAALTFDKEYXXXXXXXXXXX-XXXHEDLAASGKGLV-LGF- 120
             VGG AGAAS+IT AM KG+AA+T D++Y                E +   GKGLV + F 
Sbjct:  1250 VGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSVRFP 1309

Query:   121 -----VQG--VSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
                  +Q   +S       +GA+ +G  GF KGVGK +
Sbjct:  1310 WAYKHMQEWLLSHNCMSKEKGAQKEGAAGFFKGVGKGL 1347

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0007399 "nervous system development" evidence=ISO

GO:0007626 "locomotory behavior" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0031045 "dense core granule" evidence=ISO

GO:0035176 "social behavior" evidence=ISO

DICTYBASE|DDB_G0286545 vps13D "vacuolar protein sorting-associated protein 13 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 146 (56.5 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 33/96 (34%), Positives = 50/96 (52%)

Query:    57 MSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYXXXXXXXXXXXXXX-HEDLAASGKG 115
             +S+ +  V G     S+++  +GKG+A L+FD +Y                E +    K 
Sbjct:  4325 ISLVKNSVYGLFNTLSKLSNTVGKGVAILSFDDQYLRNRQRSRQKKAKHLGEGVVYGFKS 4384

Query:   116 LVLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
             L  G + GV+GVVTKPIEGA    +EGF KG+ + +
Sbjct:  4385 LGKGVIDGVTGVVTKPIEGAIKGSIEGFAKGMAQGV 4420

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q709C8	VP13C_HUMAN	No assigned EC number	0.5617	0.5827	0.0234	yes	N/A
Q8BX70	VP13C_MOUSE	No assigned EC number	0.5617	0.5827	0.0234	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	151
COG5043	2552	COG5043, MRS6, Vacuolar protein sorting-associated	6e-13

>gnl|CDD|227376 COG5043, MRS6, Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]

 Score = 64.9 bits (158), Expect = 6e-13
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 56   YMSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHE--DLAASG 113
              S  +  + G + + S+ TG++ KG++ +T D E Q  RRL   R         + A  
Sbjct: 2290 GNSFIKKTIYGVSDSVSKFTGSISKGLSLVTSDPELQSSRRLVRRRNRPKGSVYGVTAGA 2349

Query: 114  KGLVLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKAM 151
              L      G  G+  +PI GA  +G  GFVKG+GK +
Sbjct: 2350 TSLYDSTSSGEKGLALEPIIGAATNGASGFVKGLGKGI 2387

Length = 2552

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
KOG1809|consensus	1827		99.83
COG5043	2552	MRS6 Vacuolar protein sorting-associated protein [	99.75
PF09333	98	ATG_C: ATG C terminal domain; InterPro: IPR015412	99.1
PF09333	98	ATG_C: ATG C terminal domain; InterPro: IPR015412	89.46

>KOG1809|consensus

Probab=99.83  E-value=1.5e-21  Score=192.30  Aligned_cols=144  Identities=41%  Similarity=0.642  Sum_probs=127.9

Q ss_pred             CCceEEEeccccHHHHHHHHhhcccchhhhhhhhhhceeecccccc------------------------------cccc
Q psy17165          3 TGIQRILLLTEDDAVFTDVRASGNYELFDQEISLSMHRIGVSLLDN------------------------------EKGN   52 (151)
Q Consensus         3 ~~~qrv~lFt~~~~l~~~~~~~~~~el~~q~~~~si~giG~S~v~n------------------------------~~g~   52 (151)
                      ++.-+=++|.+...++..+..||.-+.+.|-|++..   +.+..+|                              ..+.
T Consensus      1568 ~~~~~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~---~~~~~~~p~~l~~~~s~~~~d~f~~p~~g~~~~~~~~~~~~ 1644 (1827)
T KOG1809|consen 1568 NSFLLENAFSTLDELISEVASHYSQQFLKQIYKLVG---SLDVLGNPVGLFRDLSSGVEDLFYEPFQGAVQGPEEFVEGF 1644 (1827)
T ss_pred             hhHHHhhccccHHHHHHHHHHHHHHHHHHHHHhhhc---cccccCCceeeeecccccchhhccCcccchhcchHHHhhhh
Confidence            344455789999999999999999999999998742   1221111                              2245


Q ss_pred             hhhhhhhhhccchhhhchHHHHHhhHhhhhhhhccchHHHHHHHHHhhccccHHHHHHHhhhhhhhhhhccccccccccc
Q psy17165         53 ELLYMSITRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKPI  132 (151)
Q Consensus        53 ~~g~~sl~~~tv~G~~~s~skitgs~~kgl~~lt~D~~y~~~r~~~~~~~~~~~~Gl~~g~~~~~~g~~~GvtGiv~~P~  132 (151)
                      ..|+.++.+|+|+|++++++|+||++++|++++|||++|+++||.++++|+|+.+|+..|++.|+.|++.|++|+. +|+
T Consensus      1645 ~~g~~~~~~~~v~~~~~~~s~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~g~~g~~-~p~ 1723 (1827)
T KOG1809|consen 1645 ALGTSSFFGKTVGGIAGAVSKITGTMGKGLAALTMDEKYQQKRRAENKKPKGFVEGLARGGKGLAMGFVSGVTGIA-KPI 1723 (1827)
T ss_pred             hhhhhhhccceeeeeecchhheeecccccchhhccchhHHHHHHHHhcCCCchhhhhhhccchHhhhhhhcceecc-ccc
Confidence            7889999999999999999999999999999999999999999988999999999999999999999999999999 999


Q ss_pred             cchhhcCcccccccccccC
Q psy17165        133 EGAKDDGVEGFVKGVGKAM  151 (151)
Q Consensus       133 ~Gak~~G~~Gf~kGvgkGl  151 (151)
                      +|||++ +.||+||+|||+
T Consensus      1724 ~~~~~~-~~g~~~g~gkg~ 1741 (1827)
T KOG1809|consen 1724 EGAKKE-AAGFVKGLGKGL 1741 (1827)
T ss_pred             cchhcc-cchhheeeccee
Confidence            999999 999999999996

>COG5043 MRS6 Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]

Probab=99.75  E-value=1.8e-19  Score=173.21  Aligned_cols=142  Identities=27%  Similarity=0.342  Sum_probs=123.7

Q ss_pred             eccccHHHHHHHHhhcccchhhhhhhhh--hceee------------cc-----------ccccc----ccchhhhhhhh
Q psy17165         10 LLTEDDAVFTDVRASGNYELFDQEISLS--MHRIG------------VS-----------LLDNE----KGNELLYMSIT   60 (151)
Q Consensus        10 lFt~~~~l~~~~~~~~~~el~~q~~~~s--i~giG------------~S-----------~v~n~----~g~~~g~~sl~   60 (151)
                      ..++-+.+++.+..||.-|...|.+++.  .--+|            ++           .++|.    .+.++|+.|+.
T Consensus      2215 a~~sl~~l~d~i~shY~qq~~~qi~Ki~g~aD~lGNpvglfetvssGv~DlFyEP~~g~~l~~~~~~~g~~iAkG~~SFi 2294 (2552)
T COG5043        2215 ARVSLPELFDLIASHYLQQVEYQIYKILGSADFLGNPVGLFETVSSGVSDLFYEPYQGRFLVDNSQEWGIGIAKGGNSFI 2294 (2552)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHhhcchhhcCCcceeeeccccchhhccccccceeeeccCcceeceeeccchhHHH
Confidence            4567789999999999999999988772  11122            11           11111    36789999999


Q ss_pred             hccchhhhchHHHHHhhHhhhhhhhccchHHHHHHH--HHhhccccHHHHHHHhhhhhhhhhhccccccccccccchhhc
Q psy17165         61 RIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRR--LQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKDD  138 (151)
Q Consensus        61 ~~tv~G~~~s~skitgs~~kgl~~lt~D~~y~~~r~--~~~~~~~~~~~Gl~~g~~~~~~g~~~GvtGiv~~P~~Gak~~  138 (151)
                      +++++|+.++++|+|+++++|++..|+|.+||..||  +++++|++..-|+..|+..|+.++.+|+.||-.+|+.||+++
T Consensus      2295 kkti~GvsdsvsK~tgsi~kgLslvt~D~~~q~srr~~~~~nrpk~~~y~v~~Ga~s~~~s~ssG~kGlal~Pi~~~~~~ 2374 (2552)
T COG5043        2295 KKTIYGVSDSVSKFTGSISKGLSLVTSDPELQSSRRLVRRRNRPKGSVYGVTAGATSLYDSTSSGEKGLALEPIIGAATN 2374 (2552)
T ss_pred             HHhhccccchhHhhhccccccceeeccCHHHhhhhhhhhhccCCccceEEEeeccchHHhhhhccccccccCceechhhc
Confidence            999999999999999999999999999999999988  667899999999999999999999999999999999999999


Q ss_pred             CcccccccccccC
Q psy17165        139 GVEGFVKGVGKAM  151 (151)
Q Consensus       139 G~~Gf~kGvgkGl  151 (151)
                      |+.||+||+|||+
T Consensus      2375 g~~gfvKGlGKGi 2387 (2552)
T COG5043        2375 GASGFVKGLGKGI 2387 (2552)
T ss_pred             cchheeecccccc
Confidence            9999999999996

>PF09333 ATG_C: ATG C terminal domain; InterPro: IPR015412 Eukaryotes have developed an evolutionarily conserved process, termed autophagy, to survive starvation conditions

Probab=99.10  E-value=1.5e-11  Score=87.85  Aligned_cols=55  Identities=47%  Similarity=0.779  Sum_probs=53.1

Q ss_pred             HHhhccccHHHHHHHhhhhhhhhhhccccccccccccchhhcCcccccccccccC
Q psy17165         97 LQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKDDGVEGFVKGVGKAM  151 (151)
Q Consensus        97 ~~~~~~~~~~~Gl~~g~~~~~~g~~~GvtGiv~~P~~Gak~~G~~Gf~kGvgkGl  151 (151)
                      .+.++|+++.+||.+|.++|..||.+|+++|+..|+++++++|+.||++|++||+
T Consensus         5 ~~~~qP~~~~eGl~~a~~~l~~g~~~~~~~i~~~p~~~~~~~g~~g~~~gv~kgv   59 (98)
T PF09333_consen    5 LYANQPKDLREGLQQAYQSLGRGLQSGASGIVAKPIEGAQQEGVKGFVKGVGKGV   59 (98)
T ss_pred             HhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccChHHHHHHHHHhc
Confidence            5678999999999999999999999999999999999999999999999999986

The vacuole or lysosome mediates the turnover and recycling of non-essential intracellular material for re-use in critical biosynthetic reactions. ATG2 (also known as Apg2) is required for the formation and/or completion of cytosolic sequestering vesicles that are needed for vacuolar import through both the Cvt pathway and autophagy, as well as for the specific degradation of peroxisomes. Apg2 is a peripheral membrane protein that localises to the previously identified perivacuolar compartment that contains Apg9 []. This entry represents the C-terminal domain of Apg2 and related proteins.

>PF09333 ATG_C: ATG C terminal domain; InterPro: IPR015412 Eukaryotes have developed an evolutionarily conserved process, termed autophagy, to survive starvation conditions

Probab=89.46  E-value=0.28  Score=34.72  Aligned_cols=63  Identities=24%  Similarity=0.309  Sum_probs=39.4

Q ss_pred             hhccchhhhchHHHHHhhHhhhhhhhccchHHHHHHHHHhhccccHHHHHHHhhhhhhhhhhccccccccccccchhh
Q psy17165         60 TRIGVGGAAGAASRITGAMGKGIAALTFDKEYQRRRRLQTARQATLHEDLAASGKGLVLGFVQGVSGVVTKPIEGAKD  137 (151)
Q Consensus        60 ~~~tv~G~~~s~skitgs~~kgl~~lt~D~~y~~~r~~~~~~~~~~~~Gl~~g~~~~~~g~~~GvtGiv~~P~~Gak~  137 (151)
                      ..|...|+..+...+...+..+...+..      .+.+       ..+  ..|..+|..+++.|+.++|.+|+-||-+
T Consensus        10 P~~~~eGl~~a~~~l~~g~~~~~~~i~~------~p~~-------~~~--~~g~~g~~~gv~kgvp~~vvkP~iG~~e   72 (98)
T PF09333_consen   10 PKDLREGLQQAYQSLGRGLQSGASGIVA------KPIE-------GAQ--QEGVKGFVKGVGKGVPGAVVKPMIGATE   72 (98)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHH------hHHH-------HHh--ccChHHHHHHHHHhchHHHHhhHHHHHH
Confidence            3444555555555555555555444321      1110       000  2577789999999999999999999874

The vacuole or lysosome mediates the turnover and recycling of non-essential intracellular material for re-use in critical biosynthetic reactions. ATG2 (also known as Apg2) is required for the formation and/or completion of cytosolic sequestering vesicles that are needed for vacuolar import through both the Cvt pathway and autophagy, as well as for the specific degradation of peroxisomes. Apg2 is a peripheral membrane protein that localises to the previously identified perivacuolar compartment that contains Apg9 []. This entry represents the C-terminal domain of Apg2 and related proteins.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00