Psyllid ID: psy17340

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MPPIGICRISSIVEKVDLVETYLRVCPLHKSSGDVPQGLFPAQEQSYLPKVLTYDEAEDEDNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIG
Secondary Structure (PSIPRED)
cccccEEEEEEEEEccccHHHHHcccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEEEEEcccHHEEEEccccccccccccccccHHHccccccEEEcccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccHHHHHHccccccccHHccHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccc
Coil and Loop (DISEMBL)
MPPIGICRISSIVEKVDLVETYLrvcplhkssgdvpqglfpaqeqsylpkvltydeaedednslinidgfttsklppgilphglpqvkdvkpaitslehteikkeetkptsklppgilphglpqvkdvkpaitslehteikkeetkpivelsedekLKITLSEEFQHFVARTGRVMERLLAEKSDMYKdymglgdadeig
Flexible Loop (DISEMBL)
mppigicrissivEKVDLVETYLRVCPLHKSSGDVPQGLFPAQEQSYLPKVLTYDEAEDEDNSLINIDGFTTSKLPPGILPhglpqvkdvkpAITSLehteikkeetkptsklppgilphglpqvkdVKPAITslehteikkeetkpivelsedeKLKITLSEEFQHFVARTGRVMERLLAEKsdmykdymglgdadeig
Low Complexity Region (SEG)
MPPIGICRISSIVEKVDLVETYLRVCPLHKSSGDVPQGLFPAQEQSYLPKVLTYDEAEDEDNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIG
Disordered region (IsUnstruct)
***IGICRISSIVEKVDLVETYLRVCPLHKSSGDVPQGLFPA**QSYLPKVLTYD*******SLINIDGFTTSKLPPGILP***************************************************************************LKITLSEEFQHFVARTGRVMERLLAE****Y*************
Disordered Region (DISOPRED)
*PPIGICRISSIVEKVDLVETYL**********************************************************************************************************************************DEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDY**********
Disordered Region (DISEMBL)
MPPIGICRISSIVEKVDLVETYLRVCPLHKSSGDVPQGLFPAQEQSYLPKVLTYDEAEDEDNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSLEHTEI**********LPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIG
Disordered Region (DISPRO)
MPPIGICRISSIVEKVDLVETYLRVCPLHKSSGDVPQGLFPAQEQSYLPKVLTYDEAEDEDNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSL************TSKLPPGILPHGLPQVKDVKPAITSLE*********KPIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGL*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPPIGICRISSIVEKVDLVETYLRVCPLHKSSGDVPQGLFPAQEQSYLPKVLTYDEAEDEDNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q24246	663	Cytoplasmic dynein 1 inte	no	N/A	0.425	0.128	0.608	6e-22
O88485	628	Cytoplasmic dynein 1 inte	yes	N/A	0.32	0.101	0.528	8e-07
Q63100	643	Cytoplasmic dynein 1 inte	yes	N/A	0.26	0.080	0.574	1e-06
Q29RQ3	608	Cytoplasmic dynein 1 inte	yes	N/A	0.295	0.097	0.524	2e-06
O14576	645	Cytoplasmic dynein 1 inte	yes	N/A	0.26	0.080	0.555	4e-06

>sp|Q24246|DYIN_DROME Cytoplasmic dynein 1 intermediate chain OS=Drosophila melanogaster GN=sw PE=1 SV=3

 Score =  103 bits (258), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 66/92 (71%), Gaps = 7/92 (7%)

Query: 110 TSKLPPGILPHGLPQVKDVKPAITSLE---HTEIKKEETKPIVELSEDEKLKITLSEEFQ 166
           TSKLPPG L HGLP VKDV PAIT LE    TE+KKE    + ELSE++K  I LSE FQ
Sbjct: 202 TSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKE----VNELSEEQKQMIILSENFQ 257

Query: 167 HFVARTGRVMERLLAEKSDMYKDYMGLGDADE 198
            FV R GRV+ER L+E  D+Y DY+G GD++E
Sbjct: 258 RFVVRAGRVIERALSENVDIYTDYIGGGDSEE 289

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the help dynein bind to dynactin 150 kDa component.
Drosophila melanogaster (taxid: 7227)

>sp|O88485|DC1I1_MOUSE Cytoplasmic dynein 1 intermediate chain 1 OS=Mus musculus GN=Dync1i1 PE=1 SV=2

 Score = 53.5 bits (127), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 6/70 (8%)

Query: 128 VKPAI---TSLEHTEIKKEETK--PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAE 182
           V+P I   + LE+ E KK+ETK  P  EL+E+EK +I  SEEF  F  RT RV+ER LAE
Sbjct: 172 VEPKIGHDSELENQE-KKQETKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERALAE 230

Query: 183 KSDMYKDYMG 192
            SD++ DY G
Sbjct: 231 DSDIFFDYSG 240

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. May play a role in mediating the interaction of cytoplasmic dynein with membranous organelles and kinetochores.

Mus musculus (taxid: 10090)

>sp|Q63100|DC1I1_RAT Cytoplasmic dynein 1 intermediate chain 1 OS=Rattus norvegicus GN=Dync1i1 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 2/54 (3%)

Query: 141 KKEETK--PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMG 192
           KK+ETK  P  EL+E+EK +I  SEEF  F  RT RV+ER LAE SD++ DY G
Sbjct: 202 KKQETKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYSG 255

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. May play a role in mediating the interaction of cytoplasmic dynein with membranous organelles and kinetochores.

Rattus norvegicus (taxid: 10116)

>sp|Q29RQ3|DC1I1_BOVIN Cytoplasmic dynein 1 intermediate chain 1 OS=Bos taurus GN=DYNC1I1 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 2/61 (3%)

Query: 134 SLEHTEIKKEETK--PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYM 191
           S +  E KK+E K  P  EL+E+EK +I  SEEF  F  RT RV+ER LAE SD++ DY 
Sbjct: 160 SEQENEDKKQEVKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYS 219

Query: 192 G 192
           G
Sbjct: 220 G 220

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCTN1. May play a role in mediating the interaction of cytoplasmic dynein with membranous organelles and kinetochores.

Bos taurus (taxid: 9913)

>sp|O14576|DC1I1_HUMAN Cytoplasmic dynein 1 intermediate chain 1 OS=Homo sapiens GN=DYNC1I1 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/54 (55%), Positives = 37/54 (68%), Gaps = 2/54 (3%)

Query: 141 KKEETK--PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYKDYMG 192
           KK+E K  P  EL+E+EK +I  SEEF  F  RT RV+ER LAE SD++ DY G
Sbjct: 204 KKQEVKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYSG 257

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. May play a role in mediating the interaction of cytoplasmic dynein with membranous organelles and kinetochores.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
91091602	657	PREDICTED: similar to cytoplasmic dynein	0.405	0.123	0.670	1e-22
270001040	694	hypothetical protein TcasGA2_TC011326 [T	0.405	0.116	0.670	2e-22
328697565	662	PREDICTED: cytoplasmic dynein 1 intermed	0.585	0.176	0.418	2e-21
45551484	544	Sperm-specific dynein intermediate chain	0.545	0.200	0.456	2e-21
194893353	671	GG18006 [Drosophila erecta] gi|195482017	0.545	0.162	0.463	2e-21
60678201	544	AT17034p [Drosophila melanogaster]	0.545	0.200	0.456	2e-21
317453662	554	AT13950p [Drosophila melanogaster]	0.545	0.196	0.456	2e-21
201066257	554	LP16352p [Drosophila melanogaster]	0.545	0.196	0.456	2e-21
45556073	543	Sperm-specific dynein intermediate chain	0.545	0.200	0.456	2e-21
295393159	533	GH16657p [Drosophila melanogaster]	0.545	0.204	0.456	2e-21

>gi|91091602|ref|XP_975764.1| PREDICTED: similar to cytoplasmic dynein intermediate chain isoform 2 [Tribolium castaneum]

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 64/82 (78%), Gaps = 1/82 (1%)

Query: 111 SKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPIVELSEDEKLKITLSEEFQHFVA 170
           SKLPPGILPHGLPQVK+V+PA+T+LE  E  K+E K + ELSE+EK  I LSE+FQHFV 
Sbjct: 173 SKLPPGILPHGLPQVKEVQPAVTALEQ-EQAKQEVKEVRELSEEEKQMIILSEDFQHFVD 231

Query: 171 RTGRVMERLLAEKSDMYKDYMG 192
           R GRVMER+L E  D Y DY G
Sbjct: 232 RAGRVMERVLCENVDYYTDYSG 253

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001040|gb|EEZ97487.1| hypothetical protein TcasGA2_TC011326 [Tribolium castaneum]

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 64/82 (78%), Gaps = 1/82 (1%)

Query: 111 SKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPIVELSEDEKLKITLSEEFQHFVA 170
           SKLPPGILPHGLPQVK+V+PA+T+LE  E  K+E K + ELSE+EK  I LSE+FQHFV 
Sbjct: 210 SKLPPGILPHGLPQVKEVQPAVTALEQ-EQAKQEVKEVRELSEEEKQMIILSEDFQHFVD 268

Query: 171 RTGRVMERLLAEKSDMYKDYMG 192
           R GRVMER+L E  D Y DY G
Sbjct: 269 RAGRVMERVLCENVDYYTDYSG 290

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328697565|ref|XP_003240371.1| PREDICTED: cytoplasmic dynein 1 intermediate chain-like isoform 2 [Acyrthosiphon pisum]

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 83/160 (51%), Gaps = 43/160 (26%)

Query: 45  QSYLPKVLTYD----EAEDEDNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSLEHT 100
           Q++   VLTYD    +AEDED SL N+  F                              
Sbjct: 147 QAFGYYVLTYDDGSGQAEDEDISLTNLSTFQ----------------------------- 177

Query: 101 EIKKEETKPTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPIVELSEDEKLKIT 160
                     SKLPPGIL  GLPQVK+V PA+TSLE   I KEE K + ELS+ EK+ I 
Sbjct: 178 ----------SKLPPGILSQGLPQVKEVAPAVTSLERELIIKEEPKKVRELSDAEKMMIV 227

Query: 161 LSEEFQHFVARTGRVMERLLAEKSDMYKDYMGLGDADEIG 200
            SE+FQ F+ R GRVMER L+E  D+Y DY G  D +++ 
Sbjct: 228 HSEDFQQFMDRAGRVMERALSENVDIYTDYTGALDDNDVN 267

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45551484|ref|NP_728323.2| Sperm-specific dynein intermediate chain 3 [Drosophila melanogaster] gi|45447082|gb|AAN08994.2| Sperm-specific dynein intermediate chain 3 [Drosophila melanogaster]

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 84/149 (56%), Gaps = 40/149 (26%)

Query: 51  VLTYD-EAEDEDNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKP 109
           VL +D + +DE++SL N+    TSKLPPG L HGLP VKDV PAIT L   EIKKE    
Sbjct: 60  VLAFDAQGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPL---EIKKE---- 112

Query: 110 TSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPIVELSEDEKLKITLSEEFQHFV 169
                                       TE+KKE    + ELSE++K  I LSE FQ FV
Sbjct: 113 ----------------------------TEVKKE----VNELSEEQKQMIILSENFQRFV 140

Query: 170 ARTGRVMERLLAEKSDMYKDYMGLGDADE 198
            R GRV+ER L+E  D+Y DY+G GD++E
Sbjct: 141 VRAGRVIERALSENVDIYTDYIGGGDSEE 169

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194893353|ref|XP_001977860.1| GG18006 [Drosophila erecta] gi|195482017|ref|XP_002101874.1| GE15363 [Drosophila yakuba] gi|190649509|gb|EDV46787.1| GG18006 [Drosophila erecta] gi|194189398|gb|EDX02982.1| GE15363 [Drosophila yakuba]

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/149 (46%), Positives = 85/149 (57%), Gaps = 40/149 (26%)

Query: 51  VLTYD-EAEDEDNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKP 109
           VL +D + +DE++SL N+D   TSKLPPG L HGLP VKDV PAIT L   EIKKE    
Sbjct: 188 VLAFDAQGDDEESSLQNLDNGFTSKLPPGYLTHGLPTVKDVAPAITPL---EIKKE---- 240

Query: 110 TSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPIVELSEDEKLKITLSEEFQHFV 169
                                       TE+KKE    + ELSE++K  I LSE FQ FV
Sbjct: 241 ----------------------------TEVKKE----VNELSEEQKQMIILSENFQRFV 268

Query: 170 ARTGRVMERLLAEKSDMYKDYMGLGDADE 198
            R GRV+ER L+E  D+Y DY+G GD++E
Sbjct: 269 VRAGRVIERALSENVDIYTDYIGGGDSEE 297

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|60678201|gb|AAX33607.1| AT17034p [Drosophila melanogaster]

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 84/149 (56%), Gaps = 40/149 (26%)

Query: 51  VLTYD-EAEDEDNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKP 109
           VL +D + +DE++SL N+    TSKLPPG L HGLP VKDV PAIT L   EIKKE    
Sbjct: 60  VLAFDAQGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPL---EIKKE---- 112

Query: 110 TSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPIVELSEDEKLKITLSEEFQHFV 169
                                       TE+KKE    + ELSE++K  I LSE FQ FV
Sbjct: 113 ----------------------------TEVKKE----VNELSEEQKQMIILSENFQRFV 140

Query: 170 ARTGRVMERLLAEKSDMYKDYMGLGDADE 198
            R GRV+ER L+E  D+Y DY+G GD++E
Sbjct: 141 VRAGRVIERALSENVDIYTDYIGGGDSEE 169

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|317453662|gb|ADV19039.1| AT13950p [Drosophila melanogaster]

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 84/149 (56%), Gaps = 40/149 (26%)

Query: 51  VLTYD-EAEDEDNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKP 109
           VL +D + +DE++SL N+    TSKLPPG L HGLP VKDV PAIT L   EIKKE    
Sbjct: 60  VLAFDAQGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPL---EIKKE---- 112

Query: 110 TSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPIVELSEDEKLKITLSEEFQHFV 169
                                       TE+KKE    + ELSE++K  I LSE FQ FV
Sbjct: 113 ----------------------------TEVKKE----VNELSEEQKQMIILSENFQRFV 140

Query: 170 ARTGRVMERLLAEKSDMYKDYMGLGDADE 198
            R GRV+ER L+E  D+Y DY+G GD++E
Sbjct: 141 VRAGRVIERALSENVDIYTDYIGGGDSEE 169

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|201066257|gb|ACH92537.1| LP16352p [Drosophila melanogaster]

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 84/149 (56%), Gaps = 40/149 (26%)

Query: 51  VLTYD-EAEDEDNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKP 109
           VL +D + +DE++SL N+    TSKLPPG L HGLP VKDV PAIT L   EIKKE    
Sbjct: 60  VLAFDAQGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPL---EIKKE---- 112

Query: 110 TSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPIVELSEDEKLKITLSEEFQHFV 169
                                       TE+KKE    + ELSE++K  I LSE FQ FV
Sbjct: 113 ----------------------------TEVKKE----VNELSEEQKQMIILSENFQRFV 140

Query: 170 ARTGRVMERLLAEKSDMYKDYMGLGDADE 198
            R GRV+ER L+E  D+Y DY+G GD++E
Sbjct: 141 VRAGRVIERALSENVDIYTDYIGGGDSEE 169

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45556073|ref|NP_996516.1| Sperm-specific dynein intermediate chain 2 [Drosophila melanogaster] gi|45556094|ref|NP_996519.1| Sperm-specific dynein intermediate chain 4 [Drosophila melanogaster] gi|45447080|gb|AAS65420.1| Sperm-specific dynein intermediate chain 2 [Drosophila melanogaster] gi|45447084|gb|AAS65423.1| Sperm-specific dynein intermediate chain 4 [Drosophila melanogaster]

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 84/149 (56%), Gaps = 40/149 (26%)

Query: 51  VLTYD-EAEDEDNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKP 109
           VL +D + +DE++SL N+    TSKLPPG L HGLP VKDV PAIT L   EIKKE    
Sbjct: 60  VLAFDAQGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPL---EIKKE---- 112

Query: 110 TSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPIVELSEDEKLKITLSEEFQHFV 169
                                       TE+KKE    + ELSE++K  I LSE FQ FV
Sbjct: 113 ----------------------------TEVKKE----VNELSEEQKQMIILSENFQRFV 140

Query: 170 ARTGRVMERLLAEKSDMYKDYMGLGDADE 198
            R GRV+ER L+E  D+Y DY+G GD++E
Sbjct: 141 VRAGRVIERALSENVDIYTDYIGGGDSEE 169

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|295393159|gb|ADG03440.1| GH16657p [Drosophila melanogaster]

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 84/149 (56%), Gaps = 40/149 (26%)

Query: 51  VLTYD-EAEDEDNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKP 109
           VL +D + +DE++SL N+    TSKLPPG L HGLP VKDV PAIT L   EIKKE    
Sbjct: 60  VLAFDAQGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPL---EIKKE---- 112

Query: 110 TSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPIVELSEDEKLKITLSEEFQHFV 169
                                       TE+KKE    + ELSE++K  I LSE FQ FV
Sbjct: 113 ----------------------------TEVKKE----VNELSEEQKQMIILSENFQRFV 140

Query: 170 ARTGRVMERLLAEKSDMYKDYMGLGDADE 198
            R GRV+ER L+E  D+Y DY+G GD++E
Sbjct: 141 VRAGRVIERALSENVDIYTDYIGGGDSEE 169

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
FB|FBgn0067861	517	Sdic1 "Sperm-specific dynein i	0.425	0.164	0.608	1.7e-21
FB|FBgn0053497	543	Sdic2 "Sperm-specific dynein i	0.425	0.156	0.608	2e-21
FB|FBgn0053499	543	Sdic4 "Sperm-specific dynein i	0.425	0.156	0.608	2e-21
FB|FBgn0052823	544	Sdic3 "Sperm-specific dynein i	0.425	0.156	0.608	2e-21
FB|FBgn0003654	663	sw "short wing" [Drosophila me	0.425	0.128	0.608	3.2e-21
MGI|MGI:107743	628	Dync1i1 "dynein cytoplasmic 1	0.32	0.101	0.528	8.3e-07
UNIPROTKB|D4A9K8	622	Dync1i1 "Cytoplasmic dynein 1	0.32	0.102	0.5	2.8e-06
RGD|2512	643	Dync1i1 "dynein cytoplasmic 1	0.32	0.099	0.5	3e-06
UNIPROTKB|F1S087	612	DYNC1I2 "Uncharacterized prote	0.91	0.297	0.282	5.2e-06
UNIPROTKB|E7EQL5	305	DYNC1I2 "Cytoplasmic dynein 1	0.91	0.596	0.277	6.8e-06

FB|FBgn0067861 Sdic1 "Sperm-specific dynein intermediate chain 1" [Drosophila melanogaster (taxid:7227)]

 Score = 258 (95.9 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 56/92 (60%), Positives = 66/92 (71%)

Query:   110 TSKLPPGILPHGLPQVKDVKPAITSLE---HTEIKKEETKPIVELSEDEKLKITLSEEFQ 166
             TSKLPPG L HGLP VKDV PAIT LE    TE+KKE    + ELSE++K  I LSE FQ
Sbjct:    82 TSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKE----VNELSEEQKQMIILSENFQ 137

Query:   167 HFVARTGRVMERLLAEKSDMYKDYMGLGDADE 198
              FV R GRV+ER L+E  D+Y DY+G GD++E
Sbjct:   138 RFVVRAGRVIERALSENVDIYTDYIGGGDSEE 169

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0005858 "axonemal dynein complex" evidence=ISS

FB|FBgn0053497 Sdic2 "Sperm-specific dynein intermediate chain 2" [Drosophila melanogaster (taxid:7227)]

 Score = 258 (95.9 bits), Expect = 2.0e-21, P = 2.0e-21
 Identities = 56/92 (60%), Positives = 66/92 (71%)

Query:   110 TSKLPPGILPHGLPQVKDVKPAITSLE---HTEIKKEETKPIVELSEDEKLKITLSEEFQ 166
             TSKLPPG L HGLP VKDV PAIT LE    TE+KKE    + ELSE++K  I LSE FQ
Sbjct:    82 TSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKE----VNELSEEQKQMIILSENFQ 137

Query:   167 HFVARTGRVMERLLAEKSDMYKDYMGLGDADE 198
              FV R GRV+ER L+E  D+Y DY+G GD++E
Sbjct:   138 RFVVRAGRVIERALSENVDIYTDYIGGGDSEE 169

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=ISS

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

FB|FBgn0053499 Sdic4 "Sperm-specific dynein intermediate chain 4" [Drosophila melanogaster (taxid:7227)]

 Score = 258 (95.9 bits), Expect = 2.0e-21, P = 2.0e-21
 Identities = 56/92 (60%), Positives = 66/92 (71%)

Query:   110 TSKLPPGILPHGLPQVKDVKPAITSLE---HTEIKKEETKPIVELSEDEKLKITLSEEFQ 166
             TSKLPPG L HGLP VKDV PAIT LE    TE+KKE    + ELSE++K  I LSE FQ
Sbjct:    82 TSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKE----VNELSEEQKQMIILSENFQ 137

Query:   167 HFVARTGRVMERLLAEKSDMYKDYMGLGDADE 198
              FV R GRV+ER L+E  D+Y DY+G GD++E
Sbjct:   138 RFVVRAGRVIERALSENVDIYTDYIGGGDSEE 169

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=ISS

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

FB|FBgn0052823 Sdic3 "Sperm-specific dynein intermediate chain 3" [Drosophila melanogaster (taxid:7227)]

 Score = 258 (95.9 bits), Expect = 2.0e-21, P = 2.0e-21
 Identities = 56/92 (60%), Positives = 66/92 (71%)

Query:   110 TSKLPPGILPHGLPQVKDVKPAITSLE---HTEIKKEETKPIVELSEDEKLKITLSEEFQ 166
             TSKLPPG L HGLP VKDV PAIT LE    TE+KKE    + ELSE++K  I LSE FQ
Sbjct:    82 TSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKE----VNELSEEQKQMIILSENFQ 137

Query:   167 HFVARTGRVMERLLAEKSDMYKDYMGLGDADE 198
              FV R GRV+ER L+E  D+Y DY+G GD++E
Sbjct:   138 RFVVRAGRVIERALSENVDIYTDYIGGGDSEE 169

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0005858 "axonemal dynein complex" evidence=ISS

GO:0003777 "microtubule motor activity" evidence=ISS

FB|FBgn0003654 sw "short wing" [Drosophila melanogaster (taxid:7227)]

 Score = 258 (95.9 bits), Expect = 3.2e-21, P = 3.2e-21
 Identities = 56/92 (60%), Positives = 66/92 (71%)

Query:   110 TSKLPPGILPHGLPQVKDVKPAITSLE---HTEIKKEETKPIVELSEDEKLKITLSEEFQ 166
             TSKLPPG L HGLP VKDV PAIT LE    TE+KKE    + ELSE++K  I LSE FQ
Sbjct:   202 TSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKE----VNELSEEQKQMIILSENFQ 257

Query:   167 HFVARTGRVMERLLAEKSDMYKDYMGLGDADE 198
              FV R GRV+ER L+E  D+Y DY+G GD++E
Sbjct:   258 RFVVRAGRVIERALSENVDIYTDYIGGGDSEE 289

GO:0005868 "cytoplasmic dynein complex" evidence=IEA;NAS

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0001754 "eye photoreceptor cell differentiation" evidence=IGI

GO:0016482 "cytoplasmic transport" evidence=IMP

GO:0034501 "protein localization to kinetochore" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

GO:0007051 "spindle organization" evidence=IMP

GO:0051642 "centrosome localization" evidence=IMP

GO:0045503 "dynein light chain binding" evidence=IPI

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0008088 "axon cargo transport" evidence=IMP

MGI|MGI:107743 Dync1i1 "dynein cytoplasmic 1 intermediate chain 1" [Mus musculus (taxid:10090)]

 Score = 135 (52.6 bits), Expect = 8.3e-07, P = 8.3e-07
 Identities = 37/70 (52%), Positives = 47/70 (67%)

Query:   128 VKPAI---TSLEHTEIKKEETK--PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAE 182
             V+P I   + LE+ E KK+ETK  P  EL+E+EK +I  SEEF  F  RT RV+ER LAE
Sbjct:   172 VEPKIGHDSELENQE-KKQETKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERALAE 230

Query:   183 KSDMYKDYMG 192
              SD++ DY G
Sbjct:   231 DSDIFFDYSG 240

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=ISO

GO:0000922 "spindle pole" evidence=ISO

GO:0003774 "motor activity" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005868 "cytoplasmic dynein complex" evidence=ISO

GO:0005874 "microtubule" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008017 "microtubule binding" evidence=ISO

GO:0030286 "dynein complex" evidence=TAS

GO:0031982 "vesicle" evidence=ISO

GO:0047496 "vesicle transport along microtubule" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|D4A9K8 Dync1i1 "Cytoplasmic dynein 1 intermediate chain 1" [Rattus norvegicus (taxid:10116)]

 Score = 131 (51.2 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 35/70 (50%), Positives = 47/70 (67%)

Query:   128 VKPAI---TSLEHTEIKKEETK--PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAE 182
             V+P +   + LE+ + KK+ETK  P  EL+E+EK +I  SEEF  F  RT RV+ER LAE
Sbjct:   166 VEPKVGHDSELENQD-KKQETKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERALAE 224

Query:   183 KSDMYKDYMG 192
              SD++ DY G
Sbjct:   225 DSDIFFDYSG 234

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

RGD|2512 Dync1i1 "dynein cytoplasmic 1 intermediate chain 1" [Rattus norvegicus (taxid:10116)]

 Score = 131 (51.2 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 35/70 (50%), Positives = 47/70 (67%)

Query:   128 VKPAI---TSLEHTEIKKEETK--PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAE 182
             V+P +   + LE+ + KK+ETK  P  EL+E+EK +I  SEEF  F  RT RV+ER LAE
Sbjct:   187 VEPKVGHDSELENQD-KKQETKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERALAE 245

Query:   183 KSDMYKDYMG 192
              SD++ DY G
Sbjct:   246 DSDIFFDYSG 255

GO:0000776 "kinetochore" evidence=IEA;ISO;ISS

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA;ISO;ISS

GO:0003777 "microtubule motor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005868 "cytoplasmic dynein complex" evidence=IEA;ISS;IDA

GO:0005874 "microtubule" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008017 "microtubule binding" evidence=IDA

GO:0031982 "vesicle" evidence=IEA;ISO;ISS

GO:0047496 "vesicle transport along microtubule" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

UNIPROTKB|F1S087 DYNC1I2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 129 (50.5 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 56/198 (28%), Positives = 87/198 (43%)

Query:     9 ISSIVEKVDLVETYLRVCPLHKSSGDVPQG-LFPAQEQSYLPKVLTYDEAEDEDNSLINI 67
             ++S+ E+ DL +       L +S G  P+  + P         V T  EA  +D+     
Sbjct:    44 VTSVQEESDLEKKRREAEALLQSMGLTPESPIVPPPMSPSSKSVSTPSEAGSQDSG---- 99

Query:    68 DGFTTSKLPPGILPHGLPQVKDVK-PAITSLEHTEIKKEETKPTSKLPPGILPHGLPQVK 126
             DG   S+  P  +  G+ ++  V  P    + +T   KE   P    P          V 
Sbjct:   100 DGAVGSRRGP--IKLGMAKITQVDFPPREIVTYT---KETQTPVMAQPKEDEEEE-DDVV 153

Query:   127 DVKPAITSLEHTEIKKEETK----PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAE 182
               KP I   E   +KK+E      P  EL+E+EK +I  SEEF  F   + R++ER L+E
Sbjct:   154 TPKPPIEPEEEKTLKKDEESDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSE 213

Query:   183 KSDMYKDYMGLGDADEIG 200
             + +++ DY G    D+ G
Sbjct:   214 QINIFFDYSGRDLEDKEG 231

GO:0031982 "vesicle" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

UNIPROTKB|E7EQL5 DYNC1I2 "Cytoplasmic dynein 1 intermediate chain 2" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 6.8e-06, P = 6.8e-06
 Identities = 55/198 (27%), Positives = 86/198 (43%)

Query:     9 ISSIVEKVDLVETYLRVCPLHKSSGDVPQG-LFPAQEQSYLPKVLTYDEAEDEDNSLINI 67
             ++ + E+ DL +       L +S G  P+  + P         V T  EA  +D+     
Sbjct:    44 VAPVQEESDLEKKRREAEALLQSMGLTPESPIVPPPMSPSSKSVSTPSEAGSQDSG---- 99

Query:    68 DGFTTSKLPPGILPHGLPQVKDVK-PAITSLEHTEIKKEETKPTSKLPPGILPHGLPQVK 126
             DG   S+  P  +  G+ ++  V  P    + +T   KE   P    P          V 
Sbjct:   100 DGAVGSRRGP--IKLGMAKITQVDFPPREIVTYT---KETQTPVMAQPKEDEEED-DDVV 153

Query:   127 DVKPAITSLEHTEIKKEETK----PIVELSEDEKLKITLSEEFQHFVARTGRVMERLLAE 182
               KP I   E   +KK+E      P  EL+E+EK +I  SEEF  F   + R++ER L+E
Sbjct:   154 APKPPIEPEEEKTLKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSE 213

Query:   183 KSDMYKDYMGLGDADEIG 200
             + +++ DY G    D+ G
Sbjct:   214 QINIFFDYSGRDLEDKEG 231

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
PF11540	33	Dynein_IC2: Cytoplasmic dynein 1 intermediate chai	98.86
KOG1587|consensus	555		97.9

>PF11540 Dynein_IC2: Cytoplasmic dynein 1 intermediate chain 2; PDB: 2PG1_L 3FM7_D 2P2T_C

Probab=98.86  E-value=1.9e-10  Score=74.74  Aligned_cols=31  Identities=23%  Similarity=0.182  Sum_probs=16.0

Q ss_pred             ccccccccccCCCCcCCCCccce-eccccccc
Q psy17340         24 RVCPLHKSSGDVPQGLFPAQEQS-YLPKVLTY   54 (200)
Q Consensus        24 ~r~pl~ls~~~v~~~~ippke~~-Y~k~tqT~   54 (200)
                      +|+|.+|++++|+++||||||.+ |+|+|||+
T Consensus         1 ~rk~~~L~~s~v~~~dipPkE~v~YsK~TQT~   32 (33)
T PF11540_consen    1 GRKPKKLGVSKVTQTDIPPKETVSYSKETQTP   32 (33)
T ss_dssp             ------EEEB-EEEEEE------EEEEEEE--
T ss_pred             CCCcceeeEEEEEEeccCCccceeEecccccc
Confidence            58999999999999999999999 99999996

>KOG1587|consensus

Probab=97.90  E-value=2.4e-05  Score=75.05  Aligned_cols=123  Identities=20%  Similarity=0.181  Sum_probs=90.5

Q ss_pred             hhccccccccccccCCCCcCCCCccce-eccccccccccccccccccccCCccccCCCCCCcCCCCCCccccCCcccccc
Q psy17340         20 ETYLRVCPLHKSSGDVPQGLFPAQEQS-YLPKVLTYDEAEDEDNSLINIDGFTTSKLPPGILPHGLPQVKDVKPAITSLE   98 (200)
Q Consensus        20 ~~~~~r~pl~ls~~~v~~~~ippke~~-Y~k~tqT~~~~~~e~~~~~~~d~~~~~~lppgilphg~p~Vk~v~pavt~~e   98 (200)
                      .-.+++..+++...+..+..+|+++.+ |++++++.+..........+-  .+                        .. 
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~s~~~~~~~~~~~~~~~~~~~--~~------------------------~~-   92 (555)
T KOG1587|consen   40 DEDVRRGSLKPELIETTQYRNPPKTSVQYSKQTASSVIEQENPTSTSTG--WT------------------------HY-   92 (555)
T ss_pred             hhhccccCCchhhhhhhhccCcccceeEeccccccccccccCCcccccc--ee------------------------ec-
Confidence            345688899999999999999999999 999999987433222211111  01                        10 


Q ss_pred             hhhhccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhccccCCCCCCHHHHhhccCchHHHHHHHhhhHHHHH
Q psy17340         99 HTEIKKEETKPTSKLPPGILPHGLPQVKDVKPAITSLEHTEIKKEETKPIVELSEDEKLKITLSEEFQHFVARTGRVMER  178 (200)
Q Consensus        99 ~~~~~k~~~~~~~~~~~g~~p~~~p~~~~v~~~~te~e~~EkekE~e~~irELSEEEk~~I~~SeeF~~FfeRSSRVIER  178 (200)
                                           .|..++|++.    +...++++...++..+..+++++++.+....|..|++++.++|.|
T Consensus        93 ---------------------~~~~~~k~~~----~~~eee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  147 (555)
T KOG1587|consen   93 ---------------------EGGWTDKDLE----ELDEEEKKRTKKKKPKDDTEEEKSMSLEIEMMLNFFQNNAIDIYR  147 (555)
T ss_pred             ---------------------cccCcccccc----ccchhhhcccccccCccCcHHHhhhhhhhhhhhHHHHHHHHHHHH
Confidence                                 1222344442    233344444556778899999999999999999999999999999


Q ss_pred             hhccCcceeeccCCCC
Q psy17340        179 LLAEKSDMYKDYMGLG  194 (200)
Q Consensus       179 ALsE~yDI~~DYT~~~  194 (200)
                      ||+++.+++.||+...
T Consensus       148 ~l~~~~~~~~~~~~~~  163 (555)
T KOG1587|consen  148 ALAEDINVFGDYTDRP  163 (555)
T ss_pred             Hhhcccccccccccch
Confidence            9999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	200
3l9k_W	38	Insights Into Dynein Assembly From A Dynein Interme		3e-06

>pdb|3L9K|W Chain W, Insights Into Dynein Assembly From A Dynein Intermediate Cha Chain Roadblock Structure Length = 38

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 151 LSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMY 187
           LSE++K  I LSE FQ FV R GRV+ER L+E  D+Y
Sbjct: 1   LSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIY 37

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
3l9k_W	38	Dynein intermediate chain, cytosolic; LC7, light c	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster} Length = 38

 Score = 54.9 bits (132), Expect = 4e-11
 Identities = 22/37 (59%), Positives = 27/37 (72%)

Query: 151 LSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMY 187
           LSE++K  I LSE FQ FV R GRV+ER L+E  D+Y
Sbjct: 1   LSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIY 37

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 28/180 (15%), Positives = 44/180 (24%), Gaps = 58/180 (32%)

Query: 7   CRI------SSIVEKVDLVETYLRVCPLHKSSGDVPQGLFPAQEQSYLPKVLTYDEAEDE 60
           C+I        + + +    T       H S       L P + +S L K L        
Sbjct: 266 CKILLTTRFKQVTDFLSAATTT------HISLDHHSMTLTPDEVKSLLLKYL-------- 311

Query: 61  DNSLINIDGFTTSKLPP---GILPHGLP----QVKDVKPAITSLEHTEIKK-EETKPTS- 111
                         LP       P  L      ++D      + +H    K      +S 
Sbjct: 312 --------DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 112 -KLPP----------GILPHGLPQVKDVK-PAITSLEH--TEIKKEETKPIVELSEDEKL 157
             L P           + P           P I  L     ++ K +   +V       L
Sbjct: 364 NVLEPAEYRKMFDRLSVFP------PSAHIPTIL-LSLIWFDVIKSDVMVVVNKLHKYSL 416

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
3l9k_W	38	Dynein intermediate chain, cytosolic; LC7, light c	99.78
2pg1_I	33	Cytoplasmic dynein 1 intermediate chain 2; dynein	98.87
3fm7_C	27	Dynein intermediate chain, cytosolic; cytoplasmic	98.7
3glw_Z	28	Dynein intermediate chain; LC8, tctex, tctex-1, IC	98.07

>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}

Probab=99.78  E-value=7.1e-20  Score=120.34  Aligned_cols=38  Identities=58%  Similarity=0.899  Sum_probs=37.0

Q ss_pred             CCHHHHhhccCchHHHHHHHhhhHHHHHhhccCcceee
Q psy17340        151 LSEDEKLKITLSEEFQHFVARTGRVMERLLAEKSDMYK  188 (200)
Q Consensus       151 LSEEEk~~I~~SeeF~~FfeRSSRVIERALsE~yDI~~  188 (200)
                      ||+|||++|++|++|++||+||||||||||+|+||||+
T Consensus         1 LseEEk~~I~~S~~F~~F~~rsskviERAL~e~yDi~~   38 (38)
T 3l9k_W            1 LSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYT   38 (38)
T ss_dssp             CCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             CCHHHHHHHhcCHHHHHHHHHHHHHHHHHHcccccccC
Confidence            89999999999999999999999999999999999985

>2pg1_I Cytoplasmic dynein 1 intermediate chain 2; dynein light chain, LC8, PIN, tctex1, structural protein; 2.80A {Rattus norvegicus}

Probab=98.87  E-value=2.1e-10  Score=73.61  Aligned_cols=32  Identities=22%  Similarity=0.227  Sum_probs=25.5

Q ss_pred             ccccccccccCCCCcCCCCccce-ecccccccc
Q psy17340         24 RVCPLHKSSGDVPQGLFPAQEQS-YLPKVLTYD   55 (200)
Q Consensus        24 ~r~pl~ls~~~v~~~~ippke~~-Y~k~tqT~~   55 (200)
                      +|+|++|++++|+++||||||.+ |+|+|||.+
T Consensus         1 ~rk~~~L~~s~v~~~~ipPkE~v~YsK~TQT~~   33 (33)
T 2pg1_I            1 GRGPIKLGMAKITQVDFPPREIVTYTKETQTPV   33 (33)
T ss_dssp             -----CCEECCCEEEEECCCCCCEEEEEEECC-
T ss_pred             CCccceeeEEEEEEeccCCcceeEEecccccCC
Confidence            57899999999999999999999 999999963

>3fm7_C Dynein intermediate chain, cytosolic; cytoplasmic dynein, light chain tctex-1, tctex, light chain intermediate chain; 3.50A {Drosophila melanogaster}

Probab=98.70  E-value=2.5e-09  Score=66.13  Aligned_cols=26  Identities=23%  Similarity=0.203  Sum_probs=24.7

Q ss_pred             cccccCCCCcCCCCccce-eccccccc
Q psy17340         29 HKSSGDVPQGLFPAQEQS-YLPKVLTY   54 (200)
Q Consensus        29 ~ls~~~v~~~~ippke~~-Y~k~tqT~   54 (200)
                      +|++++|+++||||||.+ |+|+|||+
T Consensus         1 kL~~s~v~~~nipPkE~V~YsKeTQT~   27 (27)
T 3fm7_C            1 NLSVYNVQATNIPPKETLVYTKQTQTT   27 (27)
T ss_dssp             CEEECCCCCCEECCCCCCCEEEEEECC
T ss_pred             CcceeEEEEeccCCcceeEEeeecccC
Confidence            689999999999999999 99999995

>3glw_Z Dynein intermediate chain; LC8, tctex, tctex-1, IC, dynein chain, entropy, allostery, chelate effect, multivalent., microtubule; 3.15A {Drosophila melanogaster}

Probab=98.07  E-value=7e-07  Score=55.62  Aligned_cols=23  Identities=17%  Similarity=0.088  Sum_probs=21.3

Q ss_pred             ccCCCCcCCCCccce-eccccccc
Q psy17340         32 SGDVPQGLFPAQEQS-YLPKVLTY   54 (200)
Q Consensus        32 ~~~v~~~~ippke~~-Y~k~tqT~   54 (200)
                      +++++++||||||.+ |+|+|||.
T Consensus         3 ~~~~~~tniPPKE~v~YsKqTQT~   26 (28)
T 3glw_Z            3 VYTKQTQTTPPKETLVYTKQTQTT   26 (28)
T ss_pred             eeeeeeccCCCcceeEEEeeeeec
Confidence            468999999999999 99999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00