Psyllid ID: psy17603

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-
MANVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKTENIPLVVYPNSGERYDFHLADEKNNCVKSDVTHL
ccccEEEEccHHHHHHHccccccccccccHHHHHcccHHHHHHHHHHHHHccccEEEEccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccccEEEEEEEEcccccccccccHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHccccEEEEccccccccccccccccccHHHHHHHHHHHHHccccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEcccccccccHHHHHHHHccccccccccccccccccccccHHHHHccHHHHHHHcccccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHcccccEEEEcccccccccccccccccccccccccc
ccEEEEEccHHHHHHHHcccccccccccHHHHHHHHcHHHHHHHHHHHHHccccEEEEccHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHcccccEEEEcccccEEccccccccccccccHHHHHHHHHHccccEEcccccccccEEEEcccccEEccccccccccccccHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHcccccccccccccccccccEEEccccccEEEEcccccccEEcHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcHccHHHHEEHHHHcccccccccccccHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHccccccEEEEcccccEEccccccccccccccccccc
manvklidggfssqlstyvgdiidghplwssyFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEfldldydssyQLIKSSVDYVKEAIALEATHarirsddpardiliagsvgpygaslrdgseyrgdyvEHVSEATMAEWHRLItddpardiliagsvgpygaslrdgseyrgdyVEHVSeatmaewhRPRIQALVEAGADILAIETIPASKEAQMLCRLLRewphqkawlsfsckddkhisngesFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQlkteniplvvypnsgehilaIETIPASKEAQMLCRLLREWPNQKAWLSFsckteniplvvypnsgerydavnarwidrdlcepvdKYVTDWLDEGVALVGGCCRTYAEDTLHMkhrlddwvsglstyvgdiidghplwssyFLATAKDAVVQTHRDFikgsqtndflrdynspnlwidrdlcepvdKYVTDWLDEGVALVGGCCRTYAEDTLhmkhrlddwddkhisngeSFTQVARTCYNMNPDQLIAVGVncvrplmvsplieqlkteniplvvypnsgerydfhladeknncvksdvthl
MANVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEAtharirsddpardILIAgsvgpygaslrdGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGsvgpygaslrdGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFikgsqtndflrdYNSPNLWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLieqlkteniplVVYPNSGERYdfhladeknncvksdvthl
MANVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKTENIPLVVYPNSGERYDFHLADEKNNCVKSDVTHL
*****LIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKTENIPLVVYPNSGERYDFHLAD*************
MANVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKTENIPLVVYPNSGERYDFHLADEKNNCV***VTHL
MANVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKTENIPLVVYPNSGERYDFHLADEKNNCVKSDVTHL
MANVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKTENIPLVVYPNSGERYDFHLADEKN*CVK******
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MANVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKGSQTNDFLRDYNSPNLWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDWDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSPLIEQLKTENIPLVVYPNSGERYDFHLADEKNNCVKSDVTHL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query591 2.2.26 [Sep-21-2011]
Q47690310 Homocysteine S-methyltran N/A N/A 0.495 0.945 0.299 2e-41
O31463315 Homocysteine S-methyltran yes N/A 0.505 0.949 0.321 7e-41
Q8LAX0347 Homocysteine S-methyltran yes N/A 0.522 0.890 0.307 9e-41
Q9SDL7326 Homocysteine S-methyltran no N/A 0.485 0.880 0.314 1e-39
Q9M1W4333 Homocysteine S-methyltran no N/A 0.507 0.900 0.294 1e-39
Q9FUM9339 Homocysteine S-methyltran N/A N/A 0.495 0.864 0.302 2e-39
Q9FUM8338 Homocysteine S-methyltran N/A N/A 0.495 0.866 0.302 2e-39
Q4VNK0346 Selenocysteine Se-methylt N/A N/A 0.507 0.867 0.308 2e-39
A4ZGQ8326 Homocysteine S-methyltran N/A N/A 0.485 0.880 0.314 1e-38
P56707338 Selenocysteine methyltran N/A N/A 0.507 0.887 0.303 2e-38
>sp|Q47690|MMUM_ECOLI Homocysteine S-methyltransferase OS=Escherichia coli (strain K12) GN=mmuM PE=1 SV=2 Back     alignment and function desciption
 Score =  171 bits (433), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 175/404 (43%), Gaps = 111/404 (27%)

Query: 3   NVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQ 62
           ++ L+DG  +++L     ++ D   LWS+  L    + + + H D+ +AGA   +T SYQ
Sbjct: 15  DILLLDGAMATELEARGCNLADS--LWSAKVLVENPELIREVHLDYYRAGAQCAITASYQ 72

Query: 63  ASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYG 122
           A+  GF     LD   S  LI  SV+  ++A                             
Sbjct: 73  ATPAGFAAR-GLDEAQSKALIGKSVELARKA----------------------------- 102

Query: 123 ASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDY 182
                             EA +AE      +  A  +L+AGSVGPYGA L DGSEYRGDY
Sbjct: 103 -----------------REAYLAE------NPQAGTLLVAGSVGPYGAYLADGSEYRGDY 139

Query: 183 VEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSC 242
             H S      +HRPR++AL++AGAD+LA ET+P   E + L  LL  +P  +AW SF+ 
Sbjct: 140 --HCSVEAFQAFHRPRVEALLDAGADLLACETLPNFSEIEALAELLTAYPRARAWFSFTL 197

Query: 243 KDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENI-PLVVYPN 301
           +D +H+S+G     V          Q++A+G+NC+     ++ ++ L    + PLVVYPN
Sbjct: 198 RDSEHLSDGTPLRDVVALLAGY--PQVVALGINCIALENTTAALQHLHGLTVLPLVVYPN 255

Query: 302 SGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNA 361
           SGEH                                                  YDAV+ 
Sbjct: 256 SGEH--------------------------------------------------YDAVSK 265

Query: 362 RWIDR-DLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHR 404
            W    + C  +  Y+  W   G  L+GGCCRT   D   +K R
Sbjct: 266 TWHHHGEHCAQLADYLPQWQAAGARLIGGCCRTTPADIAALKAR 309
Catalyzes methyl transfer from S-methylmethionine or S-adenosylmethionine (less efficient) to homocysteine, selenohomocysteine and less efficiently selenocysteine.
Escherichia coli (strain K12) (taxid: 83333)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0
>sp|O31463|HMT_BACSU Homocysteine S-methyltransferase YbgG OS=Bacillus subtilis (strain 168) GN=ybgG PE=4 SV=1 Back     alignment and function description
>sp|Q8LAX0|HMT3_ARATH Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2 Back     alignment and function description
>sp|Q9SDL7|HMT1_ARATH Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1 PE=1 SV=1 Back     alignment and function description
>sp|Q9M1W4|HMT2_ARATH Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FUM9|HMT2_MAIZE Homocysteine S-methyltransferase 2 OS=Zea mays GN=HMT-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FUM8|HMT3_MAIZE Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1 Back     alignment and function description
>sp|Q4VNK0|SMTA_BRAOT Selenocysteine Se-methyltransferase OS=Brassica oleracea var. italica GN=SMT PE=1 SV=1 Back     alignment and function description
>sp|A4ZGQ8|HMT1_BRAOT Homocysteine S-methyltransferase 1 OS=Brassica oleracea var. italica GN=HMT1 PE=1 SV=1 Back     alignment and function description
>sp|P56707|SMTA_ASTBI Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query591
357606652341 putative homocysteine S-methyltransferas 0.519 0.900 0.417 1e-80
389611259343 5-methyltetrahydrofolate [Papilio polyte 0.519 0.895 0.414 3e-79
91083213348 PREDICTED: similar to homocysteine S-met 0.512 0.870 0.418 7e-79
242007818312 Homocysteine S-methyltransferase, putati 0.514 0.974 0.401 2e-77
332374172334 unknown [Dendroctonus ponderosae] 0.510 0.904 0.385 1e-70
350420371319 PREDICTED: homocysteine S-methyltransfer 0.527 0.978 0.387 2e-70
389612076285 5-methyltetrahydrofolate, partial [Papil 0.429 0.891 0.470 5e-70
307168596321 Homocysteine S-methyltransferase 3 [Camp 0.519 0.956 0.376 3e-69
383862151319 PREDICTED: homocysteine S-methyltransfer 0.522 0.968 0.371 5e-69
328782294320 PREDICTED: homocysteine S-methyltransfer 0.524 0.968 0.375 2e-68
>gi|357606652|gb|EHJ65150.1| putative homocysteine S-methyltransferase isoform 1 [Danaus plexippus] Back     alignment and taxonomy information
 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 171/410 (41%), Positives = 229/410 (55%), Gaps = 103/410 (25%)

Query: 3   NVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQ 62
           ++ ++DGGFS+QLS +VG +IDG PLWS+ FL T  + VV TH DF++AGA+ ++TN+YQ
Sbjct: 13  HIVVLDGGFSTQLSCHVGHVIDGDPLWSARFLHTHPNEVVNTHLDFLRAGANFIITNTYQ 72

Query: 63  ASIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYG 122
           AS+ GF+E LDL  +  Y+LI  +V+  K+A  L                          
Sbjct: 73  ASVEGFVEHLDLTPEQGYELITRAVELAKQARTL-------------------------- 106

Query: 123 ASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDY 182
                       Y+E        E+   I  D     L+ GSVGPYGA L DGSEY G Y
Sbjct: 107 ------------YLE--------EYENYIQHDHVP--LVVGSVGPYGAHLHDGSEYDGSY 144

Query: 183 VEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLSFSC 242
            +  S  TM EWHRPRIQAL+EAG D+LA+ETIP  +EA+MLC LLRE+P+ KAWLSFSC
Sbjct: 145 ADTTSAQTMREWHRPRIQALIEAGVDLLALETIPCQEEAEMLCDLLREFPNMKAWLSFSC 204

Query: 243 KDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTEN----IPLVV 298
           KD++ I++GESF +VA+ C+  N DQL+AVGVNC  P  V+SL++ +  +     IPL+V
Sbjct: 205 KDNQSIAHGESFQKVAKKCWESNSDQLVAVGVNCCAPSFVTSLLKGINDDRPHDPIPLIV 264

Query: 299 YPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDA 358
           YPNSGE                      ++  Q  W                        
Sbjct: 265 YPNSGE----------------------KYNPQIGW------------------------ 278

Query: 359 VNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDDW 408
                IDRD CEPV+ ++ +WLD GV  VGGCCRTYA D   +++++  W
Sbjct: 279 -----IDRDKCEPVEVFIQEWLDLGVRYVGGCCRTYAADVSRIRNQVHCW 323

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|389611259|dbj|BAM19241.1| 5-methyltetrahydrofolate [Papilio polytes] Back     alignment and taxonomy information
>gi|91083213|ref|XP_966501.1| PREDICTED: similar to homocysteine S-methyltransferase isoform 1 [Tribolium castaneum] gi|270006942|gb|EFA03390.1| hypothetical protein TcasGA2_TC013376 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242007818|ref|XP_002424718.1| Homocysteine S-methyltransferase, putative [Pediculus humanus corporis] gi|212508211|gb|EEB11980.1| Homocysteine S-methyltransferase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|332374172|gb|AEE62227.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|350420371|ref|XP_003492488.1| PREDICTED: homocysteine S-methyltransferase ybgG-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|389612076|dbj|BAM19564.1| 5-methyltetrahydrofolate, partial [Papilio xuthus] Back     alignment and taxonomy information
>gi|307168596|gb|EFN61654.1| Homocysteine S-methyltransferase 3 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|383862151|ref|XP_003706547.1| PREDICTED: homocysteine S-methyltransferase ybgG-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328782294|ref|XP_003250116.1| PREDICTED: homocysteine S-methyltransferase ybgG-like [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query591
FB|FBgn0032726331 CG10621 [Drosophila melanogast 0.304 0.543 0.403 5.8e-32
ZFIN|ZDB-GENE-030131-9545311 zgc:172121 "zgc:172121" [Danio 0.335 0.636 0.429 3.2e-42
FB|FBgn0032727331 CG10623 [Drosophila melanogast 0.284 0.507 0.385 8.3e-38
UNIPROTKB|Q4VNK0346 SMT "Selenocysteine Se-methylt 0.301 0.514 0.378 6.8e-40
TAIR|locus:2094419347 HMT3 "homocysteine S-methyltra 0.373 0.636 0.347 3e-39
TAIR|locus:2077234333 HMT2 "homocysteine methyltrans 0.247 0.438 0.413 6.7e-39
TAIR|locus:2092120326 HMT-1 [Arabidopsis thaliana (t 0.397 0.720 0.344 4.2e-37
UNIPROTKB|A4ZGQ8326 HMT1 "Homocysteine S-methyltra 0.397 0.720 0.344 3.3e-36
UNIPROTKB|Q47690310 mmuM [Escherichia coli K-12 (t 0.313 0.596 0.404 7.5e-32
CGD|CAL0004923311 SAM4 [Candida albicans (taxid: 0.302 0.575 0.305 4.9e-20
FB|FBgn0032726 CG10621 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 355 (130.0 bits), Expect = 5.8e-32, P = 5.8e-32
 Identities = 77/191 (40%), Positives = 107/191 (56%)

Query:   160 LIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASK 219
             LI  S+GP+GA L DGSEY G Y + V    + +WHR RI+A +EAG D LAIETIP   
Sbjct:   116 LIIASIGPFGAHLHDGSEYTGSYADFVPAKEITDWHRVRIEACLEAGVDALAIETIPCQM 175

Query:   220 EAQMLCRLL-REWPHQKAWLSFSCKDDKHISNGESFTQVARTCYNM----NP-DQLIAVG 273
             EA+ L  +L  ++P  K W++F CKD+  +++GE+F   A   +++    N  D+ +A+G
Sbjct:   176 EAEALVEMLCDDYPDVKFWVAFQCKDENTLAHGETFADAANAIWDLLAERNAQDKCLAIG 235

Query:   274 VNCVRPLMVSSLIEQLKT-----ENIPLVVYPNSGEHILAIETIPASKEAQMLCRLLREW 328
             VNCV P  V+ L + L       E IPLVVYPNSGE    +      +    L   + EW
Sbjct:   236 VNCVHPKFVTPLFKSLNGDREVGEQIPLVVYPNSGEVYDVVNGWQGREHCVPLANYVPEW 295

Query:   329 PNQKAWLSFSC 339
                 A +   C
Sbjct:   296 AQLGAKVIGGC 306
GO:0016205 "selenocysteine methyltransferase activity" evidence=ISS
GO:0008898 "homocysteine S-methyltransferase activity" evidence=IEA
ZFIN|ZDB-GENE-030131-9545 zgc:172121 "zgc:172121" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0032727 CG10623 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q4VNK0 SMT "Selenocysteine Se-methyltransferase" [Brassica oleracea var. italica (taxid:36774)] Back     alignment and assigned GO terms
TAIR|locus:2094419 HMT3 "homocysteine S-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077234 HMT2 "homocysteine methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092120 HMT-1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A4ZGQ8 HMT1 "Homocysteine S-methyltransferase 1" [Brassica oleracea var. italica (taxid:36774)] Back     alignment and assigned GO terms
UNIPROTKB|Q47690 mmuM [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
CGD|CAL0004923 SAM4 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.691
4th Layer2.1.1.10LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query591
PRK09485304 PRK09485, mmuM, homocysteine methyltransferase; Pr 4e-91
PLN02489335 PLN02489, PLN02489, homocysteine S-methyltransfera 1e-69
COG2040300 COG2040, MHT1, Homocysteine/selenocysteine methyla 5e-55
pfam02574303 pfam02574, S-methyl_trans, Homocysteine S-methyltr 4e-50
PRK09485304 PRK09485, mmuM, homocysteine methyltransferase; Pr 1e-14
PRK08645 612 PRK08645, PRK08645, bifunctional homocysteine S-me 4e-13
COG0646311 COG0646, MetH, Methionine synthase I (cobalamin-de 7e-13
PLN02489335 PLN02489, PLN02489, homocysteine S-methyltransfera 1e-08
COG2040300 COG2040, MHT1, Homocysteine/selenocysteine methyla 2e-07
PRK07534336 PRK07534, PRK07534, methionine synthase I; Validat 9e-07
pfam02574303 pfam02574, S-methyl_trans, Homocysteine S-methyltr 2e-06
TIGR02082 1178 TIGR02082, metH, 5-methyltetrahydrofolate--homocys 2e-04
PRK07534336 PRK07534, PRK07534, methionine synthase I; Validat 6e-04
PRK09485304 PRK09485, mmuM, homocysteine methyltransferase; Pr 0.002
PRK09490 1229 PRK09490, metH, B12-dependent methionine synthase; 0.003
>gnl|CDD|181899 PRK09485, mmuM, homocysteine methyltransferase; Provisional Back     alignment and domain information 
 Score =  282 bits (724), Expect = 4e-91
 Identities = 127/395 (32%), Positives = 170/395 (43%), Gaps = 114/395 (28%)

Query: 4   VKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQA 63
           V ++DG  +++L     D+     LWS+  L    + + Q H D+ +AGAD  +T SYQA
Sbjct: 13  VLILDGALATELEARGCDL--NDSLWSAKVLLENPELIYQVHLDYFRAGADCAITASYQA 70

Query: 64  SIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGA 123
           +  GF     L    + +LI+ SV      +A EA     R +  A   L+AGSVGPYGA
Sbjct: 71  TFQGFAA-RGLSEAEAEELIRRSV-----ELAKEA-----RDEFWAEKPLVAGSVGPYGA 119

Query: 124 SLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDYV 183
            L DGSEYRGDY                                                
Sbjct: 120 YLADGSEYRGDY------------------------------------------------ 131

Query: 184 EHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLR-EWPHQKAWLSFSC 242
             +SE  + ++HRPRI+AL EAGAD+LA ETIP   EA+ L  LL+ E+P   AWLSF+ 
Sbjct: 132 -GLSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTL 190

Query: 243 KDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNS 302
           +D  HIS+G    + A         Q++AVGVNC  P +V++ I                
Sbjct: 191 RDGTHISDGTPLAEAAALLAAS--PQVVAVGVNCTAPELVTAAI---------------- 232

Query: 303 GEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNAR 362
                           + +                       PLVVYPNSGE YDAV   
Sbjct: 233 -------------AALRAVTDK--------------------PLVVYPNSGEVYDAVTKT 259

Query: 363 WIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAED 397
           W        + +   +W   G  L+GGCCRT  ED
Sbjct: 260 WHGPADDASLGELAPEWYAAGARLIGGCCRTTPED 294

Length = 304
>gnl|CDD|215269 PLN02489, PLN02489, homocysteine S-methyltransferase Back     alignment and domain information
>gnl|CDD|224951 COG2040, MHT1, Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|217114 pfam02574, S-methyl_trans, Homocysteine S-methyltransferase Back     alignment and domain information
>gnl|CDD|181899 PRK09485, mmuM, homocysteine methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|236321 PRK08645, PRK08645, bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>gnl|CDD|223719 COG0646, MetH, Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215269 PLN02489, PLN02489, homocysteine S-methyltransferase Back     alignment and domain information
>gnl|CDD|224951 COG2040, MHT1, Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236045 PRK07534, PRK07534, methionine synthase I; Validated Back     alignment and domain information
>gnl|CDD|217114 pfam02574, S-methyl_trans, Homocysteine S-methyltransferase Back     alignment and domain information
>gnl|CDD|233714 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>gnl|CDD|236045 PRK07534, PRK07534, methionine synthase I; Validated Back     alignment and domain information
>gnl|CDD|181899 PRK09485, mmuM, homocysteine methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|236539 PRK09490, metH, B12-dependent methionine synthase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 591
PLN02489335 homocysteine S-methyltransferase 100.0
PRK09485304 mmuM homocysteine methyltransferase; Provisional 100.0
KOG1579|consensus317 100.0
COG2040300 MHT1 Homocysteine/selenocysteine methylase (S-meth 100.0
PRK07534336 methionine synthase I; Validated 100.0
PF02574305 S-methyl_trans: Homocysteine S-methyltransferase; 100.0
COG0646311 MetH Methionine synthase I (cobalamin-dependent), 100.0
PRK09490 1229 metH B12-dependent methionine synthase; Provisiona 100.0
TIGR02082 1178 metH 5-methyltetrahydrofolate--homocysteine methyl 100.0
PRK08645 612 bifunctional homocysteine S-methyltransferase/5,10 100.0
COG0646311 MetH Methionine synthase I (cobalamin-dependent), 100.0
PRK09490 1229 metH B12-dependent methionine synthase; Provisiona 99.96
PRK09485304 mmuM homocysteine methyltransferase; Provisional 99.95
TIGR02082 1178 metH 5-methyltetrahydrofolate--homocysteine methyl 99.95
PLN02489335 homocysteine S-methyltransferase 99.95
PRK07534336 methionine synthase I; Validated 99.95
PRK08645 612 bifunctional homocysteine S-methyltransferase/5,10 99.93
PF02574305 S-methyl_trans: Homocysteine S-methyltransferase; 99.93
KOG1579|consensus317 99.89
COG2040300 MHT1 Homocysteine/selenocysteine methylase (S-meth 99.89
PRK15063428 isocitrate lyase; Provisional 95.1
cd00377243 ICL_PEPM Members of the ICL/PEPM enzyme family cat 92.56
cd00377243 ICL_PEPM Members of the ICL/PEPM enzyme family cat 90.86
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 90.17
PRK06852304 aldolase; Validated 90.13
PF00682237 HMGL-like: HMGL-like of this family is not conserv 89.07
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 89.05
TIGR00262256 trpA tryptophan synthase, alpha subunit. Tryptopha 88.27
TIGR02320285 PEP_mutase phosphoenolpyruvate phosphomutase. A cl 88.17
TIGR00683290 nanA N-acetylneuraminate lyase. N-acetylneuraminat 87.89
PRK08195337 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac 87.61
TIGR00674285 dapA dihydrodipicolinate synthase. Dihydrodipicoli 86.91
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 86.48
cd00465306 URO-D_CIMS_like The URO-D_CIMS_like protein superf 86.2
cd00408281 DHDPS-like Dihydrodipicolinate synthase family. A 85.99
PLN02274505 inosine-5'-monophosphate dehydrogenase 85.61
PRK05458326 guanosine 5'-monophosphate oxidoreductase; Provisi 85.44
TIGR02317285 prpB methylisocitrate lyase. Members of this famil 85.19
COG2513289 PrpB PEP phosphonomutase and related enzymes [Carb 84.84
TIGR00737319 nifR3_yhdG putative TIM-barrel protein, nifR3 fami 84.6
PRK06252339 methylcobalamin:coenzyme M methyltransferase; Vali 84.24
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 84.21
TIGR01463340 mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi 84.11
TIGR03217333 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. 83.61
PLN02321 632 2-isopropylmalate synthase 83.38
COG2513289 PrpB PEP phosphonomutase and related enzymes [Carb 83.02
COG0329299 DapA Dihydrodipicolinate synthase/N-acetylneuramin 82.65
COG3010229 NanE Putative N-acetylmannosamine-6-phosphate epim 82.27
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 82.0
PRK05286344 dihydroorotate dehydrogenase 2; Reviewed 81.94
PF01208343 URO-D: Uroporphyrinogen decarboxylase (URO-D); Int 81.6
TIGR03249296 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh 81.37
cd00951289 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also 80.93
PRK07565334 dihydroorotate dehydrogenase 2; Reviewed 80.92
PRK03620303 5-dehydro-4-deoxyglucarate dehydratase; Provisiona 80.83
PRK00311264 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 80.61
PF01729169 QRPTase_C: Quinolinate phosphoribosyl transferase, 80.57
cd03307326 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al 80.57
TIGR01037300 pyrD_sub1_fam dihydroorotate dehydrogenase (subfam 80.5
TIGR02319294 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos 80.37
PRK13523337 NADPH dehydrogenase NamA; Provisional 80.2
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 80.2
>PLN02489 homocysteine S-methyltransferase Back     alignment and domain information 
Probab=100.00  E-value=1.4e-67  Score=553.14  Aligned_cols=311  Identities=38%  Similarity=0.662  Sum_probs=271.5

Q ss_pred             CceEEEeccHHHHHHhccCCCCCCCCCcchhhhccCHHHHHHHHHHHHHHhcceeeccccccChhchhhhcCCChHHHHH
Q psy17603          2 ANVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQ   81 (591)
Q Consensus         2 ~~~lilDGg~gT~L~~~~g~~~~~~~lWs~~~l~~~Pe~v~~vH~~yl~AGAdiI~TnTy~as~~~l~~~~g~~~~~~~~   81 (591)
                      ++++||||||||+|+++ |++++ .|+||+.+|+++||+|+++|++|++||||||+|||||+|+.+|.++ |++.+++++
T Consensus        20 ~~~lilDGgmGT~Le~~-g~~~~-~~lws~~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~-g~~~~~~~~   96 (335)
T PLN02489         20 GGCAVIDGGFATELERH-GADLN-DPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGFESR-GLSREESET   96 (335)
T ss_pred             CCEEEEEChHHHHHHhC-CCCCC-CCccchhhhcCCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHHc-CCCHHHHHH
Confidence            35899999999999998 99875 6899999999999999999999999999999999999999999884 998889999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccCCCCccccccccccCCCCCccCCCCcccCccchhhhhhhHhhhhccccCCCCcceeE
Q psy17603         82 LIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILI  161 (591)
Q Consensus        82 l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~va~~~gp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  161 (591)
                      ++++||+|||+|++++..+.                  +.+.+          +             ...+...+++++|
T Consensus        97 l~~~av~lA~~a~~~~~~~~------------------~~~~~----------~-------------~~~~~~~~~~~~V  135 (335)
T PLN02489         97 LLRKSVEIACEARDIFWDKC------------------QKGST----------S-------------RPGRELSYRPILV  135 (335)
T ss_pred             HHHHHHHHHHHHHHHHhhhc------------------ccccc----------c-------------ccccccCCCCcEE
Confidence            99999999999998631100                  00000          0             0001112346999


Q ss_pred             eeccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcC-CCceEEEE
Q psy17603        162 AGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWP-HQKAWLSF  240 (591)
Q Consensus       162 agsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~-~~pv~vSf  240 (591)
                      +|||||||+++.+|+||+|+|..++++++++++|++|++.|+++|||+|+|||||++.|++++++++++.. ++|+||||
T Consensus       136 aGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~  215 (335)
T PLN02489        136 AASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISF  215 (335)
T ss_pred             EEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEE
Confidence            99999999999999999999987789999999999999999999999999999999999999999999753 69999999


Q ss_pred             EecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCCCchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHH
Q psy17603        241 SCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVRPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQM  320 (591)
Q Consensus       241 ~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~  320 (591)
                      ++.+++++++|+++.+++..+..  ..++++||+||++|+.+.++++.+...                            
T Consensus       216 t~~~~~~l~~G~~~~~~~~~~~~--~~~~~~iGiNC~~p~~~~~~l~~l~~~----------------------------  265 (335)
T PLN02489        216 NSKDGVNVVSGDSLLECASIADS--CKKVVAVGINCTPPRFIHGLILSIRKV----------------------------  265 (335)
T ss_pred             EeCCCCccCCCCcHHHHHHHHHh--cCCceEEEecCCCHHHHHHHHHHHHhh----------------------------
Confidence            99999999999999999988742  357899999999999999999988654                            


Q ss_pred             HHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeec--CCCChHHHHHHHHHHHhcCCcEEeecCCCCHHHH
Q psy17603        321 LCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWI--DRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDT  398 (591)
Q Consensus       321 a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~--~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i  398 (591)
                                           ...||++|||+|.+||...+.|.  +..+|+.|++++++|.+.|+.+|||||||+|+||
T Consensus       266 ---------------------~~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iIGGCCgt~P~hI  324 (335)
T PLN02489        266 ---------------------TSKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLIGGCCRTTPNTI  324 (335)
T ss_pred             ---------------------cCCcEEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCCHHHH
Confidence                                 14699999999999988778885  4457899999999999999999999999999999


Q ss_pred             HHHHHHhhh
Q psy17603        399 LHMKHRLDD  407 (591)
Q Consensus       399 ~~l~~~l~~  407 (591)
                      ++|++.++.
T Consensus       325 ~al~~~l~~  333 (335)
T PLN02489        325 RAISKALSE  333 (335)
T ss_pred             HHHHHHHhc
Confidence            999998854

>PRK09485 mmuM homocysteine methyltransferase; Provisional Back     alignment and domain information
>KOG1579|consensus Back     alignment and domain information
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07534 methionine synthase I; Validated Back     alignment and domain information
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2 Back     alignment and domain information
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09490 metH B12-dependent methionine synthase; Provisional Back     alignment and domain information
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09490 metH B12-dependent methionine synthase; Provisional Back     alignment and domain information
>PRK09485 mmuM homocysteine methyltransferase; Provisional Back     alignment and domain information
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>PLN02489 homocysteine S-methyltransferase Back     alignment and domain information
>PRK07534 methionine synthase I; Validated Back     alignment and domain information
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2 Back     alignment and domain information
>KOG1579|consensus Back     alignment and domain information
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15063 isocitrate lyase; Provisional Back     alignment and domain information
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage Back     alignment and domain information
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>PRK06852 aldolase; Validated Back     alignment and domain information
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>TIGR00262 trpA tryptophan synthase, alpha subunit Back     alignment and domain information
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase Back     alignment and domain information
>TIGR00683 nanA N-acetylneuraminate lyase Back     alignment and domain information
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated Back     alignment and domain information
>TIGR00674 dapA dihydrodipicolinate synthase Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases Back     alignment and domain information
>cd00408 DHDPS-like Dihydrodipicolinate synthase family Back     alignment and domain information
>PLN02274 inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>TIGR02317 prpB methylisocitrate lyase Back     alignment and domain information
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family Back     alignment and domain information
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family Back     alignment and domain information
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase Back     alignment and domain information
>PLN02321 2-isopropylmalate synthase Back     alignment and domain information
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] Back     alignment and domain information
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase Back     alignment and domain information
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases Back     alignment and domain information
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional Back     alignment and domain information
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed Back     alignment and domain information
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>cd03307 Mta_CmuA_like MtaA_CmuA_like family Back     alignment and domain information
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein Back     alignment and domain information
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase Back     alignment and domain information
>PRK13523 NADPH dehydrogenase NamA; Provisional Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query591
1lt8_A406 Betaine-homocysteine methyltransferase; homocystei 3e-24
1q7z_A566 5-methyltetrahydrofolate S-homocysteine methyltran 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Length = 406 Back     alignment and structure
 Score =  104 bits (261), Expect = 3e-24
 Identities = 62/414 (14%), Positives = 109/414 (26%), Gaps = 129/414 (31%)

Query: 4   VKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQA 63
           + + DGGF   L    G +  G   W+        +AV Q HR+F++AG++++ T ++ A
Sbjct: 22  IVIGDGGFVFALEKR-GYVKAGP--WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYA 78

Query: 64  SIGGFMEFLDLDYDSSYQLIKSSVDYVKEAIALEATHARI-RSDDPARDILIAGSVGPYG 122
           S          +  +             + +   A  A I R      D L+AG V    
Sbjct: 79  SEDKLE-----NRGNYVLE-----KISGQEVNEAA--ADIARQVADEGDALVAGGVSQTP 126

Query: 123 ASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIAGSVGPYGASLRDGSEYRGDY 182
                   Y                    ++   + +                       
Sbjct: 127 -------SYLSA----------------KSETEVKKV----------------------- 140

Query: 183 VEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREW--PHQKAWLSF 240
                          +++  ++   D L  E     +EA      L     P      + 
Sbjct: 141 ------------FLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKP---VAATM 185

Query: 241 SCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCVR-PLMVSSLIEQLKTE------N 293
           +   +  +  G    + A             +GVNC   P +    ++ +K         
Sbjct: 186 AIGPEGDLH-GVPPGEAAVRLVKAGAS---IIGVNCHFDPTISLKTVKLMKEGLEAAQLK 241

Query: 294 IPLVVYPNSGEHILAIETIPASKEAQMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSG 353
             L+  P +     A                               K   I L  +P   
Sbjct: 242 AHLMSQPLAYHTPDAN------------------------------KQGFIDLPEFPFGL 271

Query: 354 ERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLHMKHRLDD 407
           E   A             + KY  +  + GV  +GGCC         +   L  
Sbjct: 272 EPRVATR---------WDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAP 316
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Length = 566 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query591
1lt8_A406 Betaine-homocysteine methyltransferase; homocystei 100.0
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 100.0
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 99.96
1lt8_A406 Betaine-homocysteine methyltransferase; homocystei 99.95
3eol_A433 Isocitrate lyase; seattle structural center for in 93.6
3i4e_A439 Isocitrate lyase; structural genomics, seattle str 93.13
3lg3_A435 Isocitrate lyase; conserved, CD, proteomics eviden 93.05
1s2w_A295 Phosphoenolpyruvate phosphomutase; phosphonopyruva 92.01
1f8m_A429 Isocitrate lyase, ICL; alpha-beta barrel, helix-sw 88.61
4fxs_A496 Inosine-5'-monophosphate dehydrogenase; structural 86.28
1xky_A301 Dihydrodipicolinate synthase; TIM barrel, , lysine 86.25
4h3d_A258 3-dehydroquinate dehydratase; structural genomics, 85.24
1o5k_A306 DHDPS, dihydrodipicolinate synthase; TM1521, struc 85.17
3vnd_A267 TSA, tryptophan synthase alpha chain; psychrophili 85.06
3nl6_A 540 Thiamine biosynthetic bifunctional enzyme; thiamin 84.54
3b4u_A294 Dihydrodipicolinate synthase; structural genomics, 84.42
3eoo_A298 Methylisocitrate lyase; seattle structural genomic 84.4
3ih1_A305 Methylisocitrate lyase; alpha-beta structure, TIM- 84.36
4ay7_A348 Methylcobalamin\: coenzyme M methyltransferase; TI 84.26
3eoo_A298 Methylisocitrate lyase; seattle structural genomic 83.98
3ffs_A400 Inosine-5-monophosphate dehydrogenase; beta-alpha 83.77
2v9d_A343 YAGE; dihydrodipicolinic acid synthase, N-acetyl n 83.51
2cw6_A298 Hydroxymethylglutaryl-COA lyase, mitochondrial; HM 83.5
3fkr_A309 L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f 83.14
2ehh_A294 DHDPS, dihydrodipicolinate synthase; structural ge 82.91
1jub_A311 Dihydroorotate dehydrogenase A; homodimer, alpha-b 82.84
3lye_A307 Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre 82.66
3fa4_A302 2,3-dimethylmalate lyase; alpha/beta barrel, helix 82.61
2ojp_A292 DHDPS, dihydrodipicolinate synthase; dimer, lysine 82.26
4ay7_A348 Methylcobalamin\: coenzyme M methyltransferase; TI 82.1
3lye_A307 Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre 82.04
1xg4_A295 Probable methylisocitrate lyase; 2-methylisocitrat 82.01
3d0c_A314 Dihydrodipicolinate synthase; lysine biosynthesis, 81.88
1zlp_A318 PSR132, petal death protein; TIM-barrel, helix swa 81.39
3na8_A315 Putative dihydrodipicolinate synthetase; lyase; HE 81.18
2ze3_A275 DFA0005; organic waste LEFT-OVER decomposition, al 81.16
4fo4_A366 Inosine 5'-monophosphate dehydrogenase; structural 81.0
2yr1_A257 3-dehydroquinate dehydratase; amino acid biosynthe 80.98
2yxg_A289 DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b 80.97
3cpr_A304 Dihydrodipicolinate synthetase; (beta/alpha)8-barr 80.33
3qze_A314 DHDPS, dihydrodipicolinate synthase; alpha beta ba 80.11
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Back     alignment and structure
Probab=100.00  E-value=6.1e-60  Score=503.83  Aligned_cols=317  Identities=20%  Similarity=0.241  Sum_probs=253.1

Q ss_pred             ceEEEeccHHHHHHhccCCCCCCCCCcchhhhccCHHHHHHHHHHHHHHhcceeeccccccChhchhhhcCCCh---HHH
Q psy17603          3 NVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDY---DSS   79 (591)
Q Consensus         3 ~~lilDGg~gT~L~~~~g~~~~~~~lWs~~~l~~~Pe~v~~vH~~yl~AGAdiI~TnTy~as~~~l~~~~g~~~---~~~   79 (591)
                      +++||||||||+|+++ |++.  .++|++++|+++||+|++||++|++||||||+|||||+|+.+|.++ |++.   +++
T Consensus        21 ~ilIlDGgmGT~L~~~-G~~~--~~~ws~~l~l~~Pe~V~~iH~~Yl~AGAdII~TNTf~A~~~~l~~~-G~~~~~~~~~   96 (406)
T 1lt8_A           21 EIVIGDGGFVFALEKR-GYVK--AGPWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENR-GNYVLEKISG   96 (406)
T ss_dssp             CCEECCCCHHHHHHHH-TSSC--TTTCCCTHHHHCHHHHHHHHHHHHHTTCSEEECSCTTCSSCC--------------C
T ss_pred             CEEEEeCccchHHHHC-CCCC--CcccchHhhccCHHHHHHHHHHHHHhCccceeccccccCHHHHHhc-CCccchhHHH
Confidence            3899999999999999 9875  3699999999999999999999999999999999999999999885 8753   568


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccCCCCccccccccccCCCCCccCCCCcccCccchhhhhhhHhhhhccccCCCCcce
Q psy17603         80 YQLIKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDI  159 (591)
Q Consensus        80 ~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~va~~~gp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (591)
                      ++||++||+|||+|+++                                                            .++
T Consensus        97 ~eln~~Av~LAreAa~~------------------------------------------------------------~~~  116 (406)
T 1lt8_A           97 QEVNEAAADIARQVADE------------------------------------------------------------GDA  116 (406)
T ss_dssp             HHHHHHHHHHHHHHHTT------------------------------------------------------------TTC
T ss_pred             HHHHHHHHHHHHHHHhc------------------------------------------------------------CCC
Confidence            89999999999999854                                                            127


Q ss_pred             eEeeccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcCCCceEEE
Q psy17603        160 LIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWPHQKAWLS  239 (591)
Q Consensus       160 ~VagsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~~~pv~vS  239 (591)
                      +|||||||||+++           ..+++++++++|++|+++|+++|||+|++|||+++.|++++++++++ .++|+|||
T Consensus       117 ~VAGsIGP~g~~l-----------~~~s~eel~~~~~eqi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~-~~lPv~iS  184 (406)
T 1lt8_A          117 LVAGGVSQTPSYL-----------SAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIA-SGKPVAAT  184 (406)
T ss_dssp             EEEEEECCCHHHH-----------TTCHHHHHHHHHHHHHHHHHHHTCSEEEECCCSCHHHHHHHHHHHGG-GTSCEEEE
T ss_pred             EEEEEcCCccccc-----------CCCCHHHHHHHHHHHHHHHhhCCCCEEEEcccCCHHHHHHHHHHHHH-hCCcEEEE
Confidence            8999999998754           24789999999999999999999999999999999999999999997 47999999


Q ss_pred             EEecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCC-CchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHH
Q psy17603        240 FSCKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCV-RPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEA  318 (591)
Q Consensus       240 f~~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~-~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~  318 (591)
                      |+|.++|+ ++|+++.+++..+..   .++++|||||+ +|+.|.++++.+.+..                         
T Consensus       185 ~T~~~~G~-l~G~~~~~~~~~l~~---~~~~avGvNC~~gP~~~~~~l~~l~~~~-------------------------  235 (406)
T 1lt8_A          185 MAIGPEGD-LHGVPPGEAAVRLVK---AGASIIGVNCHFDPTISLKTVKLMKEGL-------------------------  235 (406)
T ss_dssp             ECCBTTBC-TTCCCHHHHHHHHHT---TTCSEEEEESSSCHHHHHHHHHHHHHHH-------------------------
T ss_pred             EEECCCCC-cCCCcHHHHHHHhhc---CCCCEEEecCCCCHHHHHHHHHHHHHhh-------------------------
Confidence            99998999 899999999998843   45899999995 8999999999886530                         


Q ss_pred             HHHHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecC------CCChH-----HHHHHHHHHHhcCCcEE
Q psy17603        319 QMLCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWID------RDLCE-----PVDKYVTDWLDEGVALV  387 (591)
Q Consensus       319 ~~a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~------~~~~~-----~~~~~~~~~~~~Gv~~V  387 (591)
                             ..            ...+.||++|||+|..+|...+.|..      ..+|.     ++++++++|.+.|+++|
T Consensus       236 -------~~------------~g~~~pl~vyPNag~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~w~~~Ga~iI  296 (406)
T 1lt8_A          236 -------EA------------AQLKAHLMSQPLAYHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYI  296 (406)
T ss_dssp             -------HT------------TTCCCEEEEECCSBCCTTCCTTCGGGSTTTTTSCGGGBCCHHHHHHHHHHHHHHTEEEE
T ss_pred             -------hh------------cCCCccEEEecCCCCCCcCCcccccCCccccccCCHHHHHHHHHHHHHHHHHhCCCeEE
Confidence                   00            01147999999997766543334542      23343     58999999999999999


Q ss_pred             eecCCCCHHHHHHHHHHhhhcccCccccccccccCCCCc-hhhhhhhCCcchhhcchhhhh
Q psy17603        388 GGCCRTYAEDTLHMKHRLDDWVSGLSTYVGDIIDGHPLW-SSYFLATAKDAVVQTHRDFIK  447 (591)
Q Consensus       388 GgcCgtgP~~i~~l~~~l~~~~~~~~~~~pd~~~~~plw-s~~~~~~~P~~~~~~h~~~i~  447 (591)
                      ||||||+|+||++|++.++...+..   .|... .+.+| |..=++..|+.-....++|..
T Consensus       297 GGCCGTtPeHI~aia~~l~~~~~~~---~~~~~-~~~~~~sGLe~l~~~~~~~~~~~~~~~  353 (406)
T 1lt8_A          297 GGCCGFEPYHIRAIAEELAPERGFL---PPASE-KHGSWGSGLDMHTKPWVRARARKEYWE  353 (406)
T ss_dssp             CCCTTCCHHHHHHHHHHTHHHHSCC---CGGGG-GSCSTTGGGGGCSSHHHHTTCCHHHHH
T ss_pred             EEecCCCHHHHHHHHHHHhccCCCC---CCCcc-CCCCCCccccccCChHHHHHhHHHHHh
Confidence            9999999999999999998765321   11222 23334 445556688776666677754
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Back     alignment and structure
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* Back     alignment and structure
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} Back     alignment and structure
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A Back     alignment and structure
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A Back     alignment and structure
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A Back     alignment and structure
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* Back     alignment and structure
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* Back     alignment and structure
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A Back     alignment and structure
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} Back     alignment and structure
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* Back     alignment and structure
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} Back     alignment and structure
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 Back     alignment and structure
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A Back     alignment and structure
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 Back     alignment and structure
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Back     alignment and structure
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* Back     alignment and structure
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Back     alignment and structure
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A Back     alignment and structure
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} Back     alignment and structure
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Back     alignment and structure
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A Back     alignment and structure
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A Back     alignment and structure
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A Back     alignment and structure
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A Back     alignment and structure
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A Back     alignment and structure
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A Back     alignment and structure
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} Back     alignment and structure
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} Back     alignment and structure
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} Back     alignment and structure
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} Back     alignment and structure
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A Back     alignment and structure
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} Back     alignment and structure
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} Back     alignment and structure
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} Back     alignment and structure
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 591
d1lt7a_361 c.1.26.1 (A:) Betaine-homocysteine S-methyltransfe 9e-11
d1lt7a_361 c.1.26.1 (A:) Betaine-homocysteine S-methyltransfe 2e-08
d1lt7a_361 c.1.26.1 (A:) Betaine-homocysteine S-methyltransfe 0.001
d3bofa2300 c.1.26.1 (A:1-300) Cobalamin-dependent methionine 2e-10
d3bofa2300 c.1.26.1 (A:1-300) Cobalamin-dependent methionine 4e-08
d3bofa2300 c.1.26.1 (A:1-300) Cobalamin-dependent methionine 5e-04
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 361 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Betaine-homocysteine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 9e-11
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 4  VKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQA 63
          + + DGGF   L    G +  G   W+        +AV Q HR+F++AG++++ T ++ A
Sbjct: 12 IVIGDGGFVFALEKR-GYVKAG--PWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYA 68

Query: 64 SIGGFMEF--LDLDYDSSYQLIKSSVD 88
          S           L+  S  ++ +++ D
Sbjct: 69 SEDKLENRGNYVLEKISGQEVNEAAAD 95
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 361 Back     information, alignment and structure
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 361 Back     information, alignment and structure
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 300 Back     information, alignment and structure
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 300 Back     information, alignment and structure
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query591
d3bofa2300 Cobalamin-dependent methionine synthase MetH, N-te 100.0
d1lt7a_361 Betaine-homocysteine S-methyltransferase {Human (H 100.0
d1lt7a_361 Betaine-homocysteine S-methyltransferase {Human (H 99.93
d3bofa2300 Cobalamin-dependent methionine synthase MetH, N-te 99.9
d1s2wa_275 Phosphoenolpyruvate mutase {Blue mussel (Mytilus e 86.72
d1xkya1292 Dihydrodipicolinate synthase {Bacillus anthracis [ 82.5
d1gqna_252 Type I 3-dehydroquinate dehydratase {Salmonella ty 80.62
d1m3ua_262 Ketopantoate hydroxymethyltransferase PanB {Escher 80.07
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Cobalamin-dependent methionine synthase MetH, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=7.5e-56  Score=456.44  Aligned_cols=277  Identities=22%  Similarity=0.331  Sum_probs=241.3

Q ss_pred             ceEEEeccHHHHHHhccCCCCCCCCCcchhhhccCHHHHHHHHHHHHHHhcceeeccccccChhchhhhcCCChHHHHHH
Q psy17603          3 NVKLIDGGFSSQLSTYVGDIIDGHPLWSSYFLATAKDAVVQTHRDFIKAGADIVMTNSYQASIGGFMEFLDLDYDSSYQL   82 (591)
Q Consensus         3 ~~lilDGg~gT~L~~~~g~~~~~~~lWs~~~l~~~Pe~v~~vH~~yl~AGAdiI~TnTy~as~~~l~~~~g~~~~~~~~l   82 (591)
                      +++||||||||+|+++ |.     ++|++.|++++||+|+++|++|++||||||+|||||+|+.+|.++ |+ .+++.++
T Consensus        14 ~i~ilDGg~GteL~~~-G~-----~~~~~~~~~~~Pe~V~~iH~~yi~AGAdiI~TnTy~a~~~~l~~~-g~-~~~~~~~   85 (300)
T d3bofa2          14 RVLLLDGAYGTEFMKY-GY-----DDLPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRMKLRKH-GL-EDKLDPI   85 (300)
T ss_dssp             CCEECCCCSHHHHGGG-TC-----CSCGGGHHHHCHHHHHHHHHHHHTTTCSEEECSCTTCSHHHHGGG-TC-GGGHHHH
T ss_pred             CeEEEECHHHHHHHHC-CC-----CCCChHHhhcCHHHHHHHHHHHHHhCCCEEeeCceeceeChhhcC-Cc-hHHHHHH
Confidence            5899999999999999 75     479999999999999999999999999999999999999999985 88 7889999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCccccccccccCCCCCccCCCCcccCccchhhhhhhHhhhhccccCCCCcceeEe
Q psy17603         83 IKSSVDYVKEAIALEATHARIRSDDPARDILIAGSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRLITDDPARDILIA  162 (591)
Q Consensus        83 ~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~va~~~gp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Va  162 (591)
                      +++||++|++|+++                                                              ..|+
T Consensus        86 ~~~Av~la~~a~~~--------------------------------------------------------------~~~~  103 (300)
T d3bofa2          86 VRNAVRIARRAAGE--------------------------------------------------------------KLVF  103 (300)
T ss_dssp             HHHHHHHHHHHHTT--------------------------------------------------------------SEEE
T ss_pred             HHHHHHHHHHHhhh--------------------------------------------------------------cccc
Confidence            99999999999754                                                              4578


Q ss_pred             eccCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHhcC-CCceEEEEE
Q psy17603        163 GSVGPYGASLRDGSEYRGDYVEHVSEATMAEWHRPRIQALVEAGADILAIETIPASKEAQMLCRLLREWP-HQKAWLSFS  241 (591)
Q Consensus       163 gsiGP~ga~l~~g~eY~g~y~~~~~~e~l~~~h~~~i~~l~~aGvD~i~~ET~~~~~Ea~aa~~a~~~~~-~~pv~vSf~  241 (591)
                      ||+||+|.+..+        ....+.+++.++|++|++.|+++|||+|++|||+++.|++++++++++.. ..+++++++
T Consensus       104 g~i~~~g~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~~~~~s~~  175 (300)
T d3bofa2         104 GDIGPTGELPYP--------LGSTLFEEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVLAAREVSRDVFLIAHMT  175 (300)
T ss_dssp             EEECCCSCCBTT--------TSSBCHHHHHHHHHHHHHHHHHTTCSEEEEEEECCHHHHHHHHHHHHHHCSSSCEEEEEC
T ss_pred             ceEeccccccCc--------cccccHHHHHHHHHHHHHHHHhcCcceeeeeeeecHHHHHHHHHhHHhhccccceEEEEE
Confidence            999998876433        12468999999999999999999999999999999999999999999753 345666777


Q ss_pred             ecCCCcccCCCCHHHHHHHHHhhCCCCeEEEEecCC-CchhhHHHHHHHHhcCCceEEecCCCCccceeecccccHHHHH
Q psy17603        242 CKDDKHISNGESFTQVARTCYNMNPDQLIAVGVNCV-RPLMVSSLIEQLKTENIPLVVYPNSGEHILAIETIPASKEAQM  320 (591)
Q Consensus       242 ~~~~g~l~~G~~~~~~~~~~~~~~~~~~~aiGvNC~-~p~~i~~~l~~l~~~~~~i~~l~~aG~D~l~iET~~d~~E~~~  320 (591)
                      ++++|++.+|+++.+++..+.   ..+++++|+||+ .|..+..+++.+...                            
T Consensus       176 ~~~~g~~~~G~~~~~~~~~~~---~~~~~~~~inc~~~~~~~~~~~~~~~~~----------------------------  224 (300)
T d3bofa2         176 FDEKGRSLTGTDPANFAITFD---ELDIDALGINCSLGPEEILPIFQELSQY----------------------------  224 (300)
T ss_dssp             CCTTSCCTTCCCHHHHHHHHH---TSSCSEEEEESSSCHHHHHHHHHHHHHT----------------------------
T ss_pred             ecCCCCcccccchhHHHhhhc---ccccchHhhcccccccchhhhhhhhhcc----------------------------
Confidence            788899999999999888774   357899999996 578887777776543                            


Q ss_pred             HHHHHhhccccccccccccCCCCcceEEecCCCcceeccCCeecCCCChHHHHHHHHHHHhcCCcEEeecCCCCHHHHHH
Q psy17603        321 LCRLLREWPNQKAWLSFSCKTENIPLVVYPNSGERYDAVNARWIDRDLCEPVDKYVTDWLDEGVALVGGCCRTYAEDTLH  400 (591)
Q Consensus       321 a~~~~~~~~~~~~~~s~~~~~~~~pl~~~pn~g~~~d~~~g~~~~~~~~~~~~~~~~~~~~~Gv~~VGgcCgtgP~~i~~  400 (591)
                                           .+.|+++|||.|.++.. .+++.+..+|++|+++++.|.+.||++|||||||+|+||++
T Consensus       225 ---------------------~~~~~~vypN~g~~~~~-~~~~~~~~~p~~f~~~~~~w~~~Ga~iIGGCCgt~P~hI~~  282 (300)
T d3bofa2         225 ---------------------TDKFLVVEPNAGKPIVE-NGKTVYPLKPHDFAVHIDSYYELGVNIFGGCCGTTPEHVKL  282 (300)
T ss_dssp             ---------------------CCSEEEEECCSSSCEEE-TTEEECCCCHHHHHTTHHHHHHTTCSEECCCTTCCHHHHHH
T ss_pred             ---------------------ccccccccCCCCCCEeC-CCcccCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCHHHHHH
Confidence                                 25789999999988765 45566777899999999999999999999999999999999


Q ss_pred             HHHHhhhccc
Q psy17603        401 MKHRLDDWVS  410 (591)
Q Consensus       401 l~~~l~~~~~  410 (591)
                      |++.|+...|
T Consensus       283 l~~~l~~~~p  292 (300)
T d3bofa2         283 FRKVLGNRKP  292 (300)
T ss_dssp             HHHHHCSCCC
T ss_pred             HHHHHhCCCC
Confidence            9999987654
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} Back     information, alignment and structure
>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure