Psyllid ID: psy17793

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
Protein Sequence
MRDIQSQCYCLWLDRAGFVSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMPLGKNSYKTPYRRVQKTQNKQLYWV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcHHHHHHHHcccccccEEEcccccccccccEEEEccccccccccccccccEEEccccHHHHHcccccccccEEEEEcccccHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHccccccEEEEccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEcccccHHccHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHHccccccccccccccccEEEEEEEEcccccccccccccccccccccHHHHHHHHHHcccccEEEccccccccccccEEEccccccccccccccccccHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHcccEEccccHHHHHHHHcHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHccHEEEEccccccHHHHcccccccEEEEEccccccHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHcccEEEEEEcccccccHHHHccHHHHHHHccccccEEEEEccccccEEEEccHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccEEEEEEccccHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccHHHHHHccccccccccccccccEEEEEEEccccccccccccHHccccccccHHHHHHHHHHHHHHHccccccccccccccccEEccHHHHHHcccccccHHHHHHHHHcccccEEc
Coil and Loop (DISEMBL)
MRDIQSQCYCLWldragfvsvlrlparqrpslsiYCYALDILFRGVAVEITNVLSqvpnvaldssmgilqnlpsilaghyldvqpgqkvldmcaapgnkLTHIALLMNDTGtlialdkskprvTKLEETIKKLQLSSIQthvydstrintssQIDIERMKLQKESFDRilldapcsgfgqrpmfynansflnLDKKIKSYANIQKKLLQAVYRFVSLFdwqgipllkkdgiLVYCTCSLSVEENEAVIAWILHRhpevelvqtlpqlgmkglahkdleAEDQAVMqrfgppliptdrntdtIGFFICKLRKkygeapeiyihphlndcivigpllklsqsvvhhpvqiivdQPCALAVLRgadvfapgvlamplgknsyktpyrRVQKTqnkqlywv
Flexible Loop (DISEMBL)
MRDIQSQCYCLWLDRAGFVSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLqlssiqthvydstrintssqiDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFgppliptdrntdTIGFFICKLRKKYGEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMplgknsyktpyrrvqktqnkqlywv
Low Complexity Region (SEG)
MRDIQSQCYCLWLDRAGFVSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMPLGKNSYKTPYRRVQKTQNKQLYWV
Disordered region (IsUnstruct)
*****SQCYCLWLDRAGFVSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDL****QAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMPLGKNSYKTPY**************
Disordered Region (DISOPRED)
*****SQCYCLWLDRAGFVSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGE*****************PLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMPLGKNSYKTPYRRVQKTQNK*LYWV
Disordered Region (DISEMBL)
MRDIQSQCYCLWLDRAGFVSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMPLGKNSYKTPYRRVQKTQNKQLYWV
Disordered Region (DISPRO)
*RDIQSQCYCLWLDRAGFVSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMPLGKNSYKTPYRRVQKTQNKQLYWV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRDIQSQCYCLWLDRAGFVSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMPLGKNSYKTPYRRVQKTQNKQLYWV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	397	2.2.26 [Sep-21-2011]
Q7TS68	476	Putative methyltransferas	yes	N/A	0.637	0.531	0.388	3e-44
Q8TEA1	469	Putative methyltransferas	yes	N/A	0.634	0.537	0.383	5e-44
O94268	608	Putative ribosomal RNA me	yes	N/A	0.637	0.416	0.305	1e-25
P94464	447	Ribosomal RNA small subun	yes	N/A	0.523	0.465	0.334	6e-25
Q60343	274	tRNA (cytosine(48)-C(5))-	yes	N/A	0.518	0.751	0.351	6e-24
Q922K7	793	Putative ribosomal RNA me	no	N/A	0.647	0.324	0.316	1e-23
A9R925	429	Ribosomal RNA small subun	yes	N/A	0.395	0.365	0.360	1e-22
B1JJH6	429	Ribosomal RNA small subun	yes	N/A	0.395	0.365	0.360	2e-22
Q664V2	429	Ribosomal RNA small subun	yes	N/A	0.395	0.365	0.360	2e-22
A4TH21	429	Ribosomal RNA small subun	yes	N/A	0.395	0.365	0.360	2e-22

>sp|Q7TS68|NSUN6_MOUSE Putative methyltransferase NSUN6 OS=Mus musculus GN=Nsun6 PE=2 SV=2

 Score =  179 bits (455), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/291 (38%), Positives = 156/291 (53%), Gaps = 38/291 (13%)

Query: 43  FRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
            +G+ + +T  +   P+   +  S   LQNLPS +  H LD QPG+K+LDMCAAPG K T
Sbjct: 191 LKGIGIRMTEPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTT 250

Query: 102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST---RINTSSQIDIER 158
           H A LM D G +IALDK   +V KL++    L L SI+   +D+T   +++T+  I+   
Sbjct: 251 HTAALMQDKGEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGP 310

Query: 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218
             L  ESFDRI+LDAPCSG GQRP      +     K++ SY  +Q+KLL          
Sbjct: 311 PFL-PESFDRIILDAPCSGMGQRPNMACTWTL----KEVTSYQPLQRKLLHVA------- 358

Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
               + LLK  G+LVY TC++++ ENE  +AW L   P ++L    PQ+G +G+    L 
Sbjct: 359 ----VQLLKPGGVLVYSTCTITLAENEEQVAWALRTFPCLQLQPQEPQIGGEGMVGAGLT 414

Query: 279 AEDQAVMQRFGPPLIP-----TDR-------------NTDTIGFFICKLRK 311
            E    +QRF P ++P     TD              N D IGFFI K  K
Sbjct: 415 LEQLKQLQRFDPSVVPLQNMDTDSLGEARREDMIWLANKDCIGFFIAKFLK 465

May have S-adenosyl-L-methionine-dependent methyl-transferase activity.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q8TEA1|NSUN6_HUMAN Putative methyltransferase NSUN6 OS=Homo sapiens GN=NSUN6 PE=1 SV=1

 Score =  178 bits (452), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 112/292 (38%), Positives = 157/292 (53%), Gaps = 40/292 (13%)

Query: 43  FRGVAVEITNVLSQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNK 99
            +G+ + +T  +   P  + DS +     LQNLPS L  H L+ QPG+K+LD+CAAPG K
Sbjct: 191 LKGMGIRMTEPVYLSP--SFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGK 248

Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
            THIA LM+D G +IALDK   +V K+++    L L+SI+   +D T+      ++    
Sbjct: 249 TTHIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEG 308

Query: 160 K--LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
           +     ESFDRILLDAPCSG GQRP      S     K++ SY  +Q+KL  A       
Sbjct: 309 EPPFLPESFDRILLDAPCSGMGQRPNMACTWSV----KEVASYQPLQRKLFTAA------ 358

Query: 218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDL 277
                + LLK +G+LVY TC++++ ENE  +AW L + P ++L    PQ+G +G+    L
Sbjct: 359 -----VQLLKPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGL 413

Query: 278 EAEDQAVMQRFGPPLIP---TD---------------RNTDTIGFFICKLRK 311
             E    +QRF P  +P   TD                N D+IGFFI K  K
Sbjct: 414 SCEQLKQLQRFDPSAVPLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVK 465

May have S-adenosyl-L-methionine-dependent methyl-transferase activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP8B7.20c PE=1 SV=1

 Score =  117 bits (294), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 144/311 (46%), Gaps = 58/311 (18%)

Query: 41  ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
           ++ RGV +E     S+V     +S + I    P  LAGHY             L  QP +
Sbjct: 283 LINRGVNLEPIGKWSKVGLQVFESQVPIGA-TPEYLAGHYILQAASSFLPVMALAPQPNE 341

Query: 88  KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
           ++LDM +APG K+T++A L  +TG + A D +K R   L   I +L + +     YD   
Sbjct: 342 RILDMSSAPGGKVTYVAALQKNTGIIFANDSNKARTKALSANIHRLGVRNAIVCNYDG-- 399

Query: 148 INTSSQIDIERMKLQKE---SFDRILLDAPCSGFGQRPMFYNANSFLN--LDKKIKSYAN 202
                       K   E    FDR+LLDAPCSG G   + Y   S      ++   + ++
Sbjct: 400 -----------RKFPNEVIGGFDRVLLDAPCSGTG---VIYKDQSVKTNKSERDFDTLSH 445

Query: 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
           +Q++LL +    V+     G       G +VY TCS++V+E+EAVI + L + P V+LV 
Sbjct: 446 LQRQLLLSAIDSVNADSKTG-------GFIVYSTCSITVDEDEAVIQYALKKRPNVKLVS 498

Query: 263 TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEA 316
           T  + G +G          +   +RF P L  T R      N D  GFF+ KL+K   + 
Sbjct: 499 TGLEFGREGFT--------RFREKRFHPSLKLTRRYYPHVHNID--GFFVAKLKKISDKI 548

Query: 317 PEIYIHPHLND 327
           P + +   + D
Sbjct: 549 PTVNVADDMKD 559

Required for 60S ribosomal subunit synthesis. May act as ribosomal RNA methyltransferase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus subtilis (strain 168) GN=rsmB PE=3 SV=2

 Score =  115 bits (288), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 123/248 (49%), Gaps = 40/248 (16%)

Query: 69  LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
           +Q+  S+L    LD +  + VLD CAAPG K  HIA LM + G++ +LD  K +V  ++E
Sbjct: 235 IQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKE 294

Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MF 184
              +L L+ I     D+ +   +          + E FDRIL+DAPCSGFG   ++P M 
Sbjct: 295 AADRLGLTIIHAETMDARKAGET---------FENEQFDRILVDAPCSGFGVIRRKPDMK 345

Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
           Y        D   +  A IQ  +L+ +            PL+KK G LVY TC++   EN
Sbjct: 346 YTKKP----DDSAR-LAEIQLSILREI-----------APLVKKGGTLVYSTCTMDRTEN 389

Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
           + VI   +  HP+ E     P L ++    K L  + +  ++     ++P    TD  GF
Sbjct: 390 DEVIHAFIQEHPDFE-----PDLSLE----KRLPEKVRPFVRDGRLQILPHYFGTD--GF 438

Query: 305 FICKLRKK 312
           FIC +RKK
Sbjct: 439 FICSMRKK 446

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q60343|TRM4_METJA tRNA (cytosine(48)-C(5))-methyltransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=trm4 PE=1 SV=1

 Score =  112 bits (279), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 128/242 (52%), Gaps = 36/242 (14%)

Query: 70  QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
           Q++ S++    L+ +    +LDMCAAPG K TH+A LM + GT++A++ SK R   L+  
Sbjct: 68  QSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSN 127

Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANS 189
           I ++        V ++  IN   +   + +   +  FD+ILLDAPCSG     +  + N 
Sbjct: 128 INRM-------GVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSG----NIIKDKNR 176

Query: 190 FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIA 249
             N+ ++   Y ++++K L  +          GI LLKKDG LVY TCS+ VEENE VI 
Sbjct: 177 --NVSEEDIKYCSLRQKELIDI----------GIDLLKKDGELVYSTCSMEVEENEEVIK 224

Query: 250 WILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKL 309
           +IL +  +VEL+  +     KG+  K  E   +  ++ F PP  P         FFI KL
Sbjct: 225 YILQKRNDVELI-IIKANEFKGINIK--EGYIKGTLRVF-PPNEP---------FFIAKL 271

Query: 310 RK 311
           RK
Sbjct: 272 RK 273

Catalyzes AdoMet-dependent formation of m5C in tRNA. Cytidine residue at either position 40 or position 48 is likely to be methylated.

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q922K7|NOP2_MOUSE Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus GN=Nop2 PE=2 SV=1

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 143/313 (45%), Gaps = 56/313 (17%)

Query: 41  ILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQ 87
           ++ RGV ++     S+   V  DSS+ I    P  LAGHY             L  Q  +
Sbjct: 313 LINRGVNLDPLGKWSKSGLVVYDSSVPIGAT-PEYLAGHYMLQGASSMLPVMALAPQEHE 371

Query: 88  KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
           ++LDMC APG K ++IA LM +TG ++A D +  R+  +   + +L +++     YD  +
Sbjct: 372 RILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQ 431

Query: 148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK-IKSYANIQKK 206
                             FDR+LLDAPCSG G   +  +     N D+K I+  A++QK+
Sbjct: 432 FPKVVG-----------GFDRVLLDAPCSGTGV--ISKDPAVKTNKDEKDIQRCAHLQKE 478

Query: 207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQ 266
           LL +    V+     G       G LVYCTCS++VEENE V+ + L +   V LV T   
Sbjct: 479 LLLSAIDSVNAASKTG-------GYLVYCTCSITVEENEWVVDYALKKR-NVRLVPTGLD 530

Query: 267 LGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR------NTDTIGFFICKLRKKYGEAPEIY 320
            G +G          +   +RF P L  T R      N D  GFFI K +K     P+  
Sbjct: 531 FGQEGFT--------RFQARRFHPTLRSTRRFYPHTHNMD--GFFIAKFKKFSNSIPQ-- 578

Query: 321 IHPHLNDCIVIGP 333
             PH  +     P
Sbjct: 579 --PHAGNSAAATP 589

May play a role in the regulation of the cell cycle and the increased nucleolar activity that is associated with the cell proliferation. May act as ribosomal RNA methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A9R925|RSMB_YERPG Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rsmB PE=3 SV=2

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)

Query: 81  LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
           LD Q G+++LD+CAAPG K THI L       ++A+D  + R+++++E +++LQL ++  
Sbjct: 242 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 299

Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
            V D    +T             + FDRILLDAPCS  G   + P       +L  D+ I
Sbjct: 300 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 346

Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
              A +Q ++++A++           P LK  G+LVY TCS+  EEN+  IA  L RHPE
Sbjct: 347 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 395

Query: 258 VELVQT 263
            +L +T
Sbjct: 396 AQLTET 401

Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.

Yersinia pestis bv. Antiqua (strain Angola) (taxid: 349746)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 6

>sp|B1JJH6|RSMB_YERPY Ribosomal RNA small subunit methyltransferase B OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rsmB PE=3 SV=1

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)

Query: 81  LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
           LD Q G+++LD+CAAPG K THI L       ++A+D  + R+++++E +++LQL ++  
Sbjct: 242 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 299

Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
            V D    +T             + FDRILLDAPCS  G   + P       +L  D+ I
Sbjct: 300 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 346

Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
              A +Q ++++A++           P LK  G+LVY TCS+  EEN+  IA  L RHPE
Sbjct: 347 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 395

Query: 258 VELVQT 263
            +L +T
Sbjct: 396 AQLTET 401

Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.

Yersinia pseudotuberculosis serotype O:3 (strain YPIII) (taxid: 502800)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 6

>sp|Q664V2|RSMB_YERPS Ribosomal RNA small subunit methyltransferase B OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rsmB PE=3 SV=1

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)

Query: 81  LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
           LD Q G+++LD+CAAPG K THI L       ++A+D  + R+++++E +++LQL ++  
Sbjct: 242 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 299

Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
            V D    +T             + FDRILLDAPCS  G   + P       +L  D+ I
Sbjct: 300 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 346

Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
              A +Q ++++A++           P LK  G+LVY TCS+  EEN+  IA  L RHPE
Sbjct: 347 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 395

Query: 258 VELVQT 263
            +L +T
Sbjct: 396 AQLTET 401

Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.

Yersinia pseudotuberculosis (taxid: 633)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 6

>sp|A4TH21|RSMB_YERPP Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis (strain Pestoides F) GN=rsmB PE=3 SV=1

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 29/186 (15%)

Query: 81  LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
           LD Q G+++LD+CAAPG K THI L       ++A+D  + R+++++E +++LQL ++  
Sbjct: 242 LDPQNGEQILDLCAAPGGKTTHI-LEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQAV-V 299

Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKI 197
            V D    +T             + FDRILLDAPCS  G   + P       +L  D+ I
Sbjct: 300 RVGDGRAPDTWCG---------DQQFDRILLDAPCSATGVIRRHPDI----KWLRRDRDI 346

Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
              A +Q ++++A++           P LK  G+LVY TCS+  EEN+  IA  L RHPE
Sbjct: 347 SELAQLQSEIIEAIW-----------PKLKHGGVLVYATCSILPEENQQQIAAFLQRHPE 395

Query: 258 VELVQT 263
            +L +T
Sbjct: 396 AQLTET 401

Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.

Yersinia pestis (strain Pestoides F) (taxid: 386656)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
193582508	447	PREDICTED: putative methyltransferase NS	0.637	0.565	0.404	1e-50
198464825	438	GA10764 [Drosophila pseudoobscura pseudo	0.622	0.563	0.437	3e-50
195160569	438	GL24972 [Drosophila persimilis] gi|19411	0.622	0.563	0.437	4e-50
195496828	440	GE22645 [Drosophila yakuba] gi|194181959	0.624	0.563	0.416	2e-49
195019305	449	GH16775 [Drosophila grimshawi] gi|193898	0.632	0.559	0.420	4e-49
348503686	474	PREDICTED: LOW QUALITY PROTEIN: putative	0.659	0.552	0.388	7e-49
317420025	467	methyltransferase NSUN6 [Dicentrarchus l	0.662	0.563	0.389	1e-48
195377779	413	GJ11797 [Drosophila virilis] gi|19415482	0.632	0.607	0.412	2e-48
195127777	443	GI13435 [Drosophila mojavensis] gi|19391	0.634	0.568	0.418	3e-48
410909259	471	PREDICTED: putative methyltransferase NS	0.659	0.556	0.395	2e-47

>gi|193582508|ref|XP_001950228.1| PREDICTED: putative methyltransferase NSUN6-like [Acyrthosiphon pisum]

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 112/277 (40%), Positives = 174/277 (62%), Gaps = 24/277 (8%)

Query: 40  DILFRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQ-KVLDMCAAPGN 98
           D+  +G+AVE+T+  + +P+  L +  G+LQNLPS++ GH LDV     KVLDMCAAPGN
Sbjct: 189 DMNPKGIAVEMTDPATGIPSFTLPNEYGMLQNLPSVVTGHALDVNENNLKVLDMCAAPGN 248

Query: 99  KLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDS-TRINTSSQIDIE 157
           K THIA+LMN+ G++ A+DKSK ++ K+E   K   + +++ H +DS   ++ ++  + +
Sbjct: 249 KTTHIAILMNNKGSIDAVDKSKTKLNKVELRCKHFGIQNVKIHHFDSLVSVDLNNINNSD 308

Query: 158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKI-KSYANIQKKLLQAVYRFVS 216
           R   + ESFDR+LLDAPCS  GQRP+       + +DK + K +  +Q+KLL        
Sbjct: 309 RPPFKNESFDRVLLDAPCSNLGQRPLLK-----IEVDKNVLKRFPALQRKLL-------- 355

Query: 217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKD 276
                 I L+K  GILVY TC++++EENE  +AW+L + P++EL+    ++G  G+A +D
Sbjct: 356 ---INAINLVKPGGILVYSTCTITLEENEHNVAWVLEKFPQMELIAINSEIGSPGIATQD 412

Query: 277 -LEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
            L  +    ++RFG    P +   D+IGFFI K +K+
Sbjct: 413 GLNKDLCEFVRRFG----PENAEEDSIGFFISKFQKR 445

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198464825|ref|XP_001353377.2| GA10764 [Drosophila pseudoobscura pseudoobscura] gi|198149898|gb|EAL30884.2| GA10764 [Drosophila pseudoobscura pseudoobscura]

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 118/270 (43%), Positives = 159/270 (58%), Gaps = 23/270 (8%)

Query: 45  GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
           G+AVE+ + +S VP++  L S+  +LQNLPSI+    LD QPG+++LDMCAAPGNK THI
Sbjct: 188 GIAVEMQSNVSGVPSLGDLSSADALLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTTHI 247

Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR-INTSSQIDIERM-KL 161
           A LM D G ++ALD S  RV  +   +      SIQ HV+DST+ +  SS          
Sbjct: 248 AELMGDQGCVVALDNSASRVRGMLGKLGN-NYRSIQAHVFDSTKAVAASSDSSCPSAPPF 306

Query: 162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQ 221
              SFDRILLDAPCSG G RP        +   K +KSY NIQ++LL            Q
Sbjct: 307 PCASFDRILLDAPCSGLGNRPQLL---CNIKQAKILKSYPNIQRRLLA-----------Q 352

Query: 222 GIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAED 281
            + LL+  GILVY TC+++  E E+++AW L ++PE+ L+   P+ G  GL   DLE   
Sbjct: 353 AVQLLRPGGILVYSTCTVTEAECESIVAWALRKYPELRLLDATPRYGGPGLPLPDLETAQ 412

Query: 282 QAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
             ++QRFGP       + DT+GFFI K +K
Sbjct: 413 SKLLQRFGP-----GNDLDTVGFFIAKFQK 437

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195160569|ref|XP_002021148.1| GL24972 [Drosophila persimilis] gi|194118261|gb|EDW40304.1| GL24972 [Drosophila persimilis]

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/270 (43%), Positives = 159/270 (58%), Gaps = 23/270 (8%)

Query: 45  GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
           G+AVE+ + +S VP++  L S+  +LQNLPSI+    LD QPG+++LDMCAAPGNK THI
Sbjct: 188 GIAVEMQSNVSGVPSLGDLSSADALLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTTHI 247

Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR-INTSSQIDIERM-KL 161
           A LM D G ++ALD S  RV  +   +      SIQ HV+DST+ +  SS          
Sbjct: 248 AELMGDQGCVVALDNSASRVRGMLGKLGN-NYRSIQAHVFDSTKAVAASSDSSCPAAPPF 306

Query: 162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQ 221
              SFDRILLDAPCSG G RP        +   K +KSY NIQ++LL            Q
Sbjct: 307 PCASFDRILLDAPCSGLGNRPQLL---CNIKQAKILKSYPNIQRRLLA-----------Q 352

Query: 222 GIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAED 281
            + LL+  GILVY TC+++  E E+++AW L ++PE+ L+   P+ G  GL   DLE   
Sbjct: 353 AVQLLRPGGILVYSTCTVTEAECESIVAWALRKYPELRLLDATPRYGGPGLPLPDLETAQ 412

Query: 282 QAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
             ++QRFGP       + DT+GFFI K +K
Sbjct: 413 SKLLQRFGP-----GNDLDTVGFFIAKFQK 437

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195496828|ref|XP_002095858.1| GE22645 [Drosophila yakuba] gi|194181959|gb|EDW95570.1| GE22645 [Drosophila yakuba]

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 114/274 (41%), Positives = 158/274 (57%), Gaps = 26/274 (9%)

Query: 45  GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
           GVAVE+ + +S VP++  L S  G+LQNLPSI+    LD QPG+++LDMCAAPGNK +HI
Sbjct: 186 GVAVEMQSTVSGVPSLGDLSSEDGLLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHI 245

Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR-----INTSSQIDIER 158
           A L+ D G+++ALD S  RV  +   +K  +  SI  HV+DST+       ++   +   
Sbjct: 246 AELIGDGGSVVALDNSASRVRSMLLKLKHYK--SITAHVFDSTKALAPEAPSAPFGEFTA 303

Query: 159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218
                 SFDRIL+DAPCSG G RP     +  +   K + SY NIQ++L +         
Sbjct: 304 PPFPCASFDRILIDAPCSGLGNRPQL---SCSIKQAKVLSSYPNIQRRLFE--------- 351

Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
             Q +PLL+  GILVY TC+++ +E E ++AW L + PE+ L    P+ G  GL      
Sbjct: 352 --QAVPLLRPGGILVYSTCTVTEDECECIVAWALKKFPELHLTDATPRWGGSGLPLPGFA 409

Query: 279 AEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
                ++QRFG    PT  N DT+GFFI K  KK
Sbjct: 410 TCKSRLLQRFG----PTGANADTVGFFIAKFHKK 439

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195019305|ref|XP_001984952.1| GH16775 [Drosophila grimshawi] gi|193898434|gb|EDV97300.1| GH16775 [Drosophila grimshawi]

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 114/271 (42%), Positives = 159/271 (58%), Gaps = 20/271 (7%)

Query: 45  GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
           G+AV +   +S VP +  L  + G+LQNLPSI+    L  QPG+++LDMCAAPGNK TH+
Sbjct: 190 GIAVRMQRNISGVPTLGDLSDANGLLQNLPSIVCVRVLGPQPGERILDMCAAPGNKTTHM 249

Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI--NTSSQIDIERMKL 161
           A LM D GT++ALD S  R+  ++   K    S I+TH +D+T+      +         
Sbjct: 250 AELMGDVGTIVALDNSANRLRAMQS--KLANYSCIETHQFDATKAWHAAGNGPSSGPPPF 307

Query: 162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQ 221
             +SFDRILLDAPCSG G RP      S +   K ++SY +IQ+ L+            Q
Sbjct: 308 ASDSFDRILLDAPCSGLGNRPQLC---SNVKQAKVLQSYPHIQRNLMA-----------Q 353

Query: 222 GIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLA-HKDLEAE 280
            +PLL+  GILVY TC+++  E E ++AW L + P++ L+   P+LG  GL  H +L AE
Sbjct: 354 AVPLLRPGGILVYSTCTITEAECEQLVAWTLRKFPQLRLMDATPKLGAPGLPLHPELSAE 413

Query: 281 DQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
             A++QRFGP       N DT+GFFI K +K
Sbjct: 414 QCALLQRFGPSAENRVPNLDTVGFFIAKFQK 444

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348503686|ref|XP_003439395.1| PREDICTED: LOW QUALITY PROTEIN: putative methyltransferase NSUN6-like [Oreochromis niloticus]

 Score =  201 bits (510), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 113/291 (38%), Positives = 166/291 (57%), Gaps = 29/291 (9%)

Query: 33  SIYCYALDILFRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
           +I+C   D   RG+ + +   L + P+   +  S+  LQNLPS++ GH L  +PG+++LD
Sbjct: 200 TIFCT--DEPARGIGIRMVEPLYRSPSFDGVLPSLVFLQNLPSVVVGHVLGPRPGERILD 257

Query: 92  MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR-INT 150
           MCAAPG K  HIA LM D G ++ALD+ + ++ ++ +  + L L S+Q H ++ST+ +++
Sbjct: 258 MCAAPGGKTCHIAALMGDQGEVVALDRIRNKIDRIRQNAQMLHLQSVQAHCFNSTQAVSS 317

Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210
               + E      ESFDR+LLDAPCSG GQRP   N  S  +L K+I SY  +Q+KL  A
Sbjct: 318 DPAQETEGPPFPPESFDRVLLDAPCSGLGQRP---NMGSTWSL-KEICSYQPLQRKLFHA 373

Query: 211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK 270
             R           LLKK G+LVY TC++++ ENE  +AW L   P + L    P +G +
Sbjct: 374 AVR-----------LLKKGGVLVYSTCTVTLAENEEQVAWALDTFPCLSLQPQEPHIGAE 422

Query: 271 GLAHKDLEAEDQAVMQRFGPPL----------IPTDRNTDTIGFFICKLRK 311
           G+    L  E   ++QRF P L          +P   ++DTIGFFI K  K
Sbjct: 423 GMPGAGLPPEQLRLLQRFSPELSWEQTETTAPLPCRADSDTIGFFIAKFLK 473

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|317420025|emb|CBN82061.1| methyltransferase NSUN6 [Dicentrarchus labrax]

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 113/290 (38%), Positives = 162/290 (55%), Gaps = 27/290 (9%)

Query: 32  LSIYCYALDILFRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVL 90
            S++C   D   +G+ V +   L Q P+   +  S+  LQNLPS++ GH L  +PG+++L
Sbjct: 194 FSLFCT--DKPAKGIGVRMVEPLYQSPSFDGVLPSLAFLQNLPSVVVGHVLGPRPGERIL 251

Query: 91  DMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT 150
           DMCAAPG K +HIA LM D G ++ALD+ + ++ ++ E  + L L SI  + ++ST+  +
Sbjct: 252 DMCAAPGGKTSHIAALMGDQGEVVALDRIRNKIDRIRENAQMLHLRSITAYCFNSTQAVS 311

Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210
           S     E      ESFDR+LLDAPCSG GQRP   N  +   L K+I SY  +Q+KL  A
Sbjct: 312 SDPAHTEGPPFPPESFDRVLLDAPCSGLGQRP---NMGTTWGL-KEICSYQPLQRKLFHA 367

Query: 211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK 270
             R           LLKK G+LVY TC++++ ENE  +AW L   P + L    P +G +
Sbjct: 368 AVR-----------LLKKGGVLVYSTCTVTLAENEEQVAWALETFPCLTLQPQEPHIGAE 416

Query: 271 GLAHKDLEAEDQAVMQRFGPPL---------IPTDRNTDTIGFFICKLRK 311
           G+    L  E   ++QRF P L         +    ++DTIGFFI K  K
Sbjct: 417 GMLGAGLSPEQLRLLQRFSPELSWEQTGTTALSRRADSDTIGFFIAKFLK 466

Source: Dicentrarchus labrax

Species: Dicentrarchus labrax

Genus: Dicentrarchus

Family: Moronidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195377779|ref|XP_002047665.1| GJ11797 [Drosophila virilis] gi|194154823|gb|EDW70007.1| GJ11797 [Drosophila virilis]

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/269 (41%), Positives = 156/269 (57%), Gaps = 18/269 (6%)

Query: 45  GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
           G+AV + + +S VP +  L  +  +LQNLPS++    L  QPG+++LDMCAAPGNK THI
Sbjct: 159 GIAVRMQSNVSGVPTLGDLSDANALLQNLPSMVCVRVLAPQPGERILDMCAAPGNKTTHI 218

Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI-NTSSQIDIERMKLQ 162
           A LM D G +IALD S  R+  ++  +       IQ H +D+T+  N  S ID       
Sbjct: 219 AELMGDVGQIIALDNSASRMRAMQTKLGNY--DCIQAHQFDATKAWNEHSAIDSTAPPFA 276

Query: 163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQG 222
             SFDRILLDAPCSG G RP    +   +   K ++SY  IQ+ LL            Q 
Sbjct: 277 SSSFDRILLDAPCSGLGNRPQLCCS---IKQTKVLQSYPPIQRSLLA-----------QA 322

Query: 223 IPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQ 282
           +PLL+  G+LVY TC+++  E E +++W L + P+++LV   P+LG  GL   +L A   
Sbjct: 323 VPLLRPGGVLVYSTCTITEAECEQLVSWALRKFPQLQLVDATPKLGAPGLPLPELNAAQC 382

Query: 283 AVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
            ++QRFGP      +N DT+GFFI K +K
Sbjct: 383 ELLQRFGPTNENRVQNLDTVGFFIAKFQK 411

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195127777|ref|XP_002008344.1| GI13435 [Drosophila mojavensis] gi|193919953|gb|EDW18820.1| GI13435 [Drosophila mojavensis]

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 113/270 (41%), Positives = 158/270 (58%), Gaps = 18/270 (6%)

Query: 45  GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
           G+AV +   +S VP +  L     +LQNLPS++    LD QPG+++LDMCAAPGNK TH+
Sbjct: 186 GIAVRMQTNVSGVPTLGDLSDEDALLQNLPSMVCVRVLDPQPGERILDMCAAPGNKTTHM 245

Query: 104 ALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI-NTSSQIDIERMKLQ 162
           A LM + GT+IALD S  RV  + E  K    + I  H +D+T+  + +S +D       
Sbjct: 246 AELMCNRGTIIALDNSASRVRSMTE--KLANYTCITAHQFDATKAWDDNSDLDSIAPPFA 303

Query: 163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQG 222
             SFDRILLDAPCSG G RP        +   K ++SY +IQ+ +L            Q 
Sbjct: 304 SGSFDRILLDAPCSGLGNRPQLC---CNIKQPKVLQSYPHIQRNILS-----------QA 349

Query: 223 IPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQ 282
           +PLL+  GILVY TC+++  E E +++W L ++ E++LV   P+LG  GL    LEA   
Sbjct: 350 VPLLRPGGILVYSTCTVTEAECEEIVSWALRKYTELQLVDATPKLGAPGLPLPGLEAAQC 409

Query: 283 AVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
            ++QRFGP      +N DT+GFFI K +KK
Sbjct: 410 DLLQRFGPSRENRMQNLDTVGFFIAKFQKK 439

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410909259|ref|XP_003968108.1| PREDICTED: putative methyltransferase NSUN6-like [Takifugu rubripes]

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/291 (39%), Positives = 167/291 (57%), Gaps = 29/291 (9%)

Query: 33  SIYCYALDILFRGVAVEITNVLSQVPNV-ALDSSMGILQNLPSILAGHYLDVQPGQKVLD 91
           S++C   D   +GV V++   L Q P+   +  S+  LQNLPS++AGH L  +PG++VLD
Sbjct: 197 SLFCS--DEPVKGVGVQMVEPLYQSPSFDGVLPSLVFLQNLPSVVAGHVLGPRPGERVLD 254

Query: 92  MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR-INT 150
           MCAAPG K  HIA+LM D G ++ALD+ + ++ ++ E  + LQL SI+   ++ST+ ++ 
Sbjct: 255 MCAAPGGKTCHIAVLMGDQGKVVALDRIRNKIDRILENAQALQLRSIKAFCFNSTQAVSG 314

Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210
            +    E      ESFDR+LLDAPCSG GQRP   N  +  +L K+I SY  +Q+KL QA
Sbjct: 315 DAAPQAEEPPYPPESFDRVLLDAPCSGLGQRP---NMGTTWSL-KEICSYQPLQRKLFQA 370

Query: 211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK 270
             +           LLK+ G+LVY TC++++ ENE  +AW L   P + L    P +G +
Sbjct: 371 AVK-----------LLKRGGVLVYSTCTVTLAENEEQVAWALRTFPCLSLQPQEPHIGSE 419

Query: 271 GLAHKDLEAEDQAVMQRFGPPL----------IPTDRNTDTIGFFICKLRK 311
           G+    L  E   ++QRF P L          +    + DTIGFFI K  K
Sbjct: 420 GMLGAGLSPEQLRLLQRFRPELSWDQTGTAAPLSCRADRDTIGFFIAKFLK 470

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
MGI|MGI:1921705	476	Nsun6 "NOL1/NOP2/Sun domain fa	0.612	0.510	0.406	2.6e-45
RGD|1309535	476	Nsun6 "NOP2/Sun domain family,	0.617	0.514	0.405	2.6e-45
FB|FBgn0037200	439	CG11109 [Drosophila melanogast	0.619	0.560	0.416	1.9e-44
UNIPROTKB|F1RWA0	472	NSUN6 "Uncharacterized protein	0.609	0.512	0.395	6.7e-43
UNIPROTKB|E2RDT7	469	NSUN6 "Uncharacterized protein	0.551	0.466	0.417	8.5e-43
UNIPROTKB|Q8TEA1	469	NSUN6 "Putative methyltransfer	0.632	0.535	0.391	3.6e-41
UNIPROTKB|E1BQJ7	469	NSUN6 "Uncharacterized protein	0.639	0.541	0.380	9.6e-41
DICTYBASE|DDB_G0290553	501	DDB_G0290553 "PUA domain-conta	0.622	0.493	0.363	1.9e-37
UNIPROTKB|F1MC44	408	NSUN6 "Uncharacterized protein	0.503	0.490	0.427	1.2e-35
TAIR|locus:2009170	599	AT1G06560 [Arabidopsis thalian	0.256	0.170	0.390	6.5e-27

MGI|MGI:1921705 Nsun6 "NOL1/NOP2/Sun domain family member 6" [Mus musculus (taxid:10090)]

 Score = 449 (163.1 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
 Identities = 108/266 (40%), Positives = 153/266 (57%)

Query:    44 RGVAVEITNVLSQVPNV--ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
             +G+ + +T  +   P+    L S +  LQNLPS +  H LD QPG+K+LDMCAAPG K T
Sbjct:   192 KGIGIRMTEPIYLSPSFDNVLPSYI-FLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTT 250

Query:   102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR---INTSSQIDIER 158
             H A LM D G +IALDK   +V KL++    L L SI+   +D+T+   ++T+  I+   
Sbjct:   251 HTAALMQDKGEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGP 310

Query:   159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218
               L  ESFDRI+LDAPCSG GQRP   N      L K++ SY  +Q+KLL          
Sbjct:   311 PFLP-ESFDRIILDAPCSGMGQRP---NMACTWTL-KEVTSYQPLQRKLLHVA------- 358

Query:   219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
                 + LLK  G+LVY TC++++ ENE  +AW L   P ++L    PQ+G +G+    L 
Sbjct:   359 ----VQLLKPGGVLVYSTCTITLAENEEQVAWALRTFPCLQLQPQEPQIGGEGMVGAGLT 414

Query:   279 AEDQAVMQRFGPPLIPTDR-NTDTIG 303
              E    +QRF P ++P    +TD++G
Sbjct:   415 LEQLKQLQRFDPSVVPLQNMDTDSLG 440

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

RGD|1309535 Nsun6 "NOP2/Sun domain family, member 6" [Rattus norvegicus (taxid:10116)]

 Score = 449 (163.1 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
 Identities = 107/264 (40%), Positives = 152/264 (57%)

Query:    44 RGVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTH 102
             +G+ + +T  +   P+   + S    LQNLPS +  H LD QPG+K+LD+CAAPG K TH
Sbjct:   192 KGIGIRMTEPIYLSPSFDNVLSGYIFLQNLPSTVVAHVLDPQPGEKILDLCAAPGGKTTH 251

Query:   103 IALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID-IERMK- 160
             IA LM D G +IALDK   +VTKL++    L L SI+   +D+T+      +D ++    
Sbjct:   252 IAALMRDQGEVIALDKILTKVTKLKQNASLLGLHSIRAFCFDATKALKLEVMDGVDGAPP 311

Query:   161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDW 220
                ESFDRILLDAPCSG GQRP   N      L K++ SY  +Q+KLL    R       
Sbjct:   312 FLPESFDRILLDAPCSGLGQRP---NMACTWTL-KEVTSYQPLQRKLLNVAVR------- 360

Query:   221 QGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAE 280
                 LLK  G+LVY TC++++ ENE  +AW L   P ++L    PQ+G +G+    L  E
Sbjct:   361 ----LLKPGGVLVYSTCTVTLAENEEQVAWALRTFPCLQLQPQEPQIGGEGMLGAGLSLE 416

Query:   281 DQAVMQRFGPPLIPTDR-NTDTIG 303
                 +QRF P ++P +  +T+++G
Sbjct:   417 QLKQLQRFDPCVVPLESMDTNSLG 440

GO:0003723 "RNA binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

FB|FBgn0037200 CG11109 [Drosophila melanogaster (taxid:7227)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 114/274 (41%), Positives = 158/274 (57%)

Query:    45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHI 103
             GVAVE+ + +S VP +  L S  G+LQNLPSI+    LD QPG+++LDMCAAPGNK +HI
Sbjct:   186 GVAVEMQSNVSGVPTLGDLSSEDGLLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHI 245

Query:   104 ALLMNDTGTLIALDKSKPRVTKLEETIKKL-QLSSIQTHVYDSTRINT----SSQI-DIE 157
             A LM D G+++ALD S  RV  +   + KL    SI  HV++ST        S+ + +  
Sbjct:   246 AELMGDRGSVVALDNSASRVRSM---LPKLGHYKSITAHVFNSTEAVAADAPSAPVGEFT 302

Query:   158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL 217
                   ESFDRILLDAPCSG G RP     +  +   K + SY +IQ++L +        
Sbjct:   303 GPPFPCESFDRILLDAPCSGLGNRPQL---SCSIKQVKVLSSYPHIQRRLFE-------- 351

Query:   218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDL 277
                Q + L++  GILVY TC+++ +E E ++AW L +  E+ L    P+ G  GL     
Sbjct:   352 ---QAVQLVRPGGILVYSTCTVTEDECECLVAWALRKFVELRLTDATPRWGGPGLPLPGF 408

Query:   278 EAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
             EA    ++QRFGP    +  N DT+GFFI K +K
Sbjct:   409 EACKSRLLQRFGP----SGANADTVGFFIAKFQK 438

GO:0005730 "nucleolus" evidence=ISS

GO:0008649 "rRNA methyltransferase activity" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1RWA0 NSUN6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 427 (155.4 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
 Identities = 104/263 (39%), Positives = 148/263 (56%)

Query:    44 RGVAVEITNVLSQVPNVALDSSMG--ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
             +G+ + +T  +   P+   D   G   LQNLPS +  H LD QPG+++LD+CAAPG K T
Sbjct:   192 KGIGIRMTEPVYLSPSFD-DVLPGYLFLQNLPSAVVTHVLDPQPGERILDLCAAPGGKTT 250

Query:   102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE-RMK 160
             HIA  M D G +IALDK   +V K+++    L L+SI+   +D T+      ID E    
Sbjct:   251 HIAARMRDQGEVIALDKIANKVEKIKQNALLLGLNSIRAFCFDGTKA-LKLDIDTEGEPP 309

Query:   161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDW 220
                ESFDRILLDAPCSG GQRP   N      L K++ SY  +Q+KL             
Sbjct:   310 FLPESFDRILLDAPCSGMGQRP---NMACTWTL-KEVTSYQPLQRKLFTVA--------- 356

Query:   221 QGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAE 280
               + LLK  G+LVY TC++++ ENE  +AW L   P ++L +  PQ+G  G+    L +E
Sbjct:   357 --VELLKPGGVLVYSTCTVTLAENEEQVAWALGTFPCLQLQRQDPQIGGAGMMGAGLTSE 414

Query:   281 DQAVMQRFGPPLIPT-DRNTDTI 302
                 +QRF P ++P+ D + D++
Sbjct:   415 QLKQLQRFDPSVVPSWDTDIDSL 437

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E2RDT7 NSUN6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 426 (155.0 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
 Identities = 99/237 (41%), Positives = 137/237 (57%)

Query:    69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
             LQNLPS +  H LD QPG+K+LD+CAAPG K THIA LM D G +IALDK   +V K+++
Sbjct:   218 LQNLPSAVVTHVLDPQPGEKILDLCAAPGGKTTHIAALMRDQGEVIALDKISNKVEKIKQ 277

Query:   129 TIKKLQLSSIQTHVYDSTRINTSSQID-IE-RMKLQKESFDRILLDAPCSGFGQRPMFYN 186
                 L L+SI+   +D T+      ++  E       ESFDRILLDAPCSG GQRP   N
Sbjct:   278 NALLLGLNSIKAFCFDGTKALKFDMVEKAEGNPPFLPESFDRILLDAPCSGMGQRP---N 334

Query:   187 ANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
                   L K++ SY  +Q+KL               + LLK  G+LVY TC++++ ENE 
Sbjct:   335 MACSWTL-KEVTSYQPLQRKLFTVA-----------VQLLKPGGVLVYSTCTITLAENEE 382

Query:   247 VIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPT-DRNTDTI 302
              +AW L   P ++L    PQ+G +G+    L  E    +QRF P ++P+ D + D++
Sbjct:   383 QVAWALRTFPCLQLQPQDPQIGGEGMMGAGLSFEQLKQLQRFDPSVVPSWDTDIDSL 439

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q8TEA1 NSUN6 "Putative methyltransferase NSUN6" [Homo sapiens (taxid:9606)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 114/291 (39%), Positives = 159/291 (54%)

Query:    44 RGVAVEITNVLSQVPNVALDSSMG---ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKL 100
             +G+ + +T  +   P+   DS +     LQNLPS L  H L+ QPG+K+LD+CAAPG K 
Sbjct:   192 KGMGIRMTEPVYLSPS--FDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKT 249

Query:   101 THIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI-DIE-R 158
             THIA LM+D G +IALDK   +V K+++    L L+SI+   +D T+      + D E  
Sbjct:   250 THIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEGE 309

Query:   159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218
                  ESFDRILLDAPCSG GQRP   N     ++ K++ SY  +Q+KL  A        
Sbjct:   310 PPFLPESFDRILLDAPCSGMGQRP---NMACTWSV-KEVASYQPLQRKLFTAA------- 358

Query:   219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
                 + LLK +G+LVY TC++++ ENE  +AW L + P ++L    PQ+G +G+    L 
Sbjct:   359 ----VQLLKPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGLS 414

Query:   279 AEDQAVMQRFGPPLIP---TDR---------------NTDTIGFFICKLRK 311
              E    +QRF P  +P   TD                N D+IGFFI K  K
Sbjct:   415 CEQLKQLQRFDPSAVPLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVK 465

GO:0003723 "RNA binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E1BQJ7 NSUN6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 112/294 (38%), Positives = 159/294 (54%)

Query:    45 GVAVEITNVLSQVPNV--ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTH 102
             G+ V +T  +   P+    L S +  LQNLPS++  H L+ QPG+++LDMCAAPG K TH
Sbjct:   193 GLGVRMTEPVYLSPSFESVLPSHL-FLQNLPSVVVSHVLNPQPGERILDMCAAPGGKTTH 251

Query:   103 IALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR-INTSSQIDI-ERMK 160
             +A LM+D G +IA+DK   +V K+++  + LQL+ I+   YD T+ ++   + D  E   
Sbjct:   252 LATLMHDQGEVIAMDKIANKVKKIKQNAELLQLNCIKAFCYDGTKALSVEKREDKQEEPP 311

Query:   161 LQKESFDRILLDAPCSGFGQRP-MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD 219
                ESFDRILLDAPCSG GQRP M Y++       K++ SY  +Q+KL            
Sbjct:   312 FLPESFDRILLDAPCSGMGQRPNMAYSSTL-----KEVTSYQPLQRKLFTVA-------- 358

Query:   220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA 279
                + LLK  G+LVY TC++++ ENE  +AW L   P ++L    P +G +G+    L  
Sbjct:   359 ---VKLLKPGGVLVYSTCTITLSENEEQVAWALETFPCLQLQPQEPHIGGEGMRGAGLAL 415

Query:   280 EDQAVMQRFGPP---LIPTDR---------------NTDTIGFFICKLRKKYGE 315
                 ++QRF P    L  TD                N D IGFFI K  K  G+
Sbjct:   416 HQLKLLQRFDPSAGTLQGTDMESLQDCREEDLVSLANKDCIGFFIAKFMKLKGK 469

GO:0003723 "RNA binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0290553 DDB_G0290553 "PUA domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 105/289 (36%), Positives = 159/289 (55%)

Query:    45 GVAVEITNVLSQVP--NVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTH 102
             GVA+E+T  L   P  N  L+  M  LQ+LPSI   + L+ + G K++DMCAAPG K T 
Sbjct:   230 GVAIEMTERLYVCPPLNSVLEDKM-FLQHLPSIYTVYQLEPKLGDKIIDMCAAPGGKTTL 288

Query:   103 IALLM-----------------NDTGT-LIALDKSKPRVTKLEETIKKLQLSSIQTHVY- 143
             IA L+                 N+  T + ALDK+K +V K+ +  K+L L    T +  
Sbjct:   289 IASLIQQFEINNNQNNQKYQNNNEIKTEIFALDKNKGKVKKIIDLCKRLSLDKYVTCLAK 348

Query:   144 DSTRINTSSQID-IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN 202
             DS+++   +Q D +++++ Q  SFD++LLD PCSG G RP    ++S ++L       + 
Sbjct:   349 DSSKLTKENQQDPLDKIRFQSNSFDKVLLDGPCSGLGSRPRLIESSSLVDLTNS----SE 404

Query:   203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ 262
              QKKL+            Q + LLK  GILVY TCS++ EENE  ++++L+ +PE++L+ 
Sbjct:   405 FQKKLID-----------QAVSLLKPGGILVYSTCSINPEENELNVSYLLNNYPEMKLIP 453

Query:   263 TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
              +P +   GL +  L  +   ++ RF P    +D N  TIGFFI K  K
Sbjct:   454 QIPHISQPGLPNCGLTEQQCKLVSRFDP----SDSNIGTIGFFIAKFTK 498

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1MC44 NSUN6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 95/222 (42%), Positives = 129/222 (58%)

Query:    44 RGVAVEITNVLSQVPNV--ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT 101
             +GV V +T  +   P+    L S +  LQNLPS +  H LD QPG+K+LD+CAAPG K T
Sbjct:   192 KGVGVRMTEPVYLSPSFDNVLPSYL-FLQNLPSAVVSHVLDPQPGEKILDLCAAPGGKTT 250

Query:   102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR---INTSSQIDIER 158
             HIA LM+D G +IALDK   +V K+++    L L+SI+   +D T+   ++     D E 
Sbjct:   251 HIAALMHDQGEVIALDKISKKVEKIKQNALLLGLNSIRAFCFDGTKALKLDMVKDTDGEP 310

Query:   159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF 218
               L  ESFDRILLDAPCSG GQRP   N      L K++ SY  +Q+KL           
Sbjct:   311 PFLP-ESFDRILLDAPCSGMGQRP---NMACTWTL-KEVMSYQPLQRKLFTVA------- 358

Query:   219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
                 + LLK  G+LVY TC++++ ENE  +AW L   P ++L
Sbjct:   359 ----VELLKPGGMLVYSTCTVTLAENEEQVAWALEAFPGLQL 396

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

TAIR|locus:2009170 AT1G06560 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.5e-27, Sum P(2) = 6.5e-27
 Identities = 41/105 (39%), Positives = 68/105 (64%)

Query:    45 GVAVEITNVLSQVPNV--ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTH 102
             G+AV++ + + ++P++   L+  +  LQNLPSI+  H LD Q G+++LDMCAAPG K T 
Sbjct:   255 GIAVDLNHRVFRLPSLHNILEGEI-FLQNLPSIIVAHALDPQKGERILDMCAAPGGKTTA 313

Query:   103 IALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR 147
             IA+LMND G ++A D+S  +V  ++    ++  + I T   D+ +
Sbjct:   314 IAILMNDEGEIVAADRSHNKVLVVQNLSAEMGFTCITTCKLDALK 358

GO:0003723 "RNA binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	397
COG0144	355	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases	1e-63
PRK14902	444	PRK14902, PRK14902, 16S rRNA methyltransferase B;	4e-57
PRK14901	434	PRK14901, PRK14901, 16S rRNA methyltransferase B;	3e-49
pfam01189	277	pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family	5e-42
TIGR00446	264	TIGR00446, nop2p, NOL1/NOP2/sun family putative RN	9e-40
TIGR00563	426	TIGR00563, rsmB, ribosomal RNA small subunit methy	6e-34
PRK10901	427	PRK10901, PRK10901, 16S rRNA methyltransferase B;	1e-33
PRK14903	431	PRK14903, PRK14903, 16S rRNA methyltransferase B;	2e-30
PRK14904	445	PRK14904, PRK14904, 16S rRNA methyltransferase B;	1e-28
PRK11933	470	PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransf	1e-21
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	3e-04
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	0.002

>gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

 Score =  207 bits (529), Expect = 1e-63
 Identities = 89/249 (35%), Positives = 123/249 (49%), Gaps = 37/249 (14%)

Query: 68  ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKL 126
            +Q+  S L    LD +PG++VLD+CAAPG K TH+A LM N+   ++A+D S  R+ +L
Sbjct: 139 YVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRL 198

Query: 127 EETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPM 183
            E +K+L + ++     D+ R+          +    E FDRILLDAPCSG G   + P 
Sbjct: 199 RENLKRLGVRNVIVVNKDARRLA--------ELLPGGEKFDRILLDAPCSGTGVIRRDP- 249

Query: 184 FYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE 243
                 +    + I   A +QK++L A  +           LLK  G+LVY TCSL+ EE
Sbjct: 250 ---DVKWRRTPEDIAELAKLQKEILAAALK-----------LLKPGGVLVYSTCSLTPEE 295

Query: 244 NEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIG 303
           NE V+   L RHP+ EL       G         E       +R   P +       T G
Sbjct: 296 NEEVVERFLERHPDFELEPVRLPWG-PLFEGLGSELGK---TRRL-YPHVHG-----TDG 345

Query: 304 FFICKLRKK 312
           FFI KLRKK
Sbjct: 346 FFIAKLRKK 354

Length = 355

>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional

 Score =  192 bits (491), Expect = 4e-57
 Identities = 91/247 (36%), Positives = 128/247 (51%), Gaps = 42/247 (17%)

Query: 70  QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
           Q+  S+L    LD + G  VLD CAAPG K THIA L+ +TG ++ALD  + ++  +EE 
Sbjct: 235 QDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEEN 294

Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-MFY 185
            K+L L++I+T   D+ +++              E FD+IL+DAPCSG G   ++P + Y
Sbjct: 295 AKRLGLTNIETKALDARKVHEKF----------AEKFDKILVDAPCSGLGVIRRKPDIKY 344

Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
           N        + I+S   IQ ++L++V              LKK GILVY TC++  EENE
Sbjct: 345 NKTK-----EDIESLQEIQLEILESVA-----------QYLKKGGILVYSTCTIEKEENE 388

Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
            VI   L  HPE ELV             + +       +Q     ++P D  TD  GFF
Sbjct: 389 EVIEAFLEEHPEFELVPL-----QHEKPDELVYEVKDGYLQ-----ILPNDYGTD--GFF 436

Query: 306 ICKLRKK 312
           I KLRKK
Sbjct: 437 IAKLRKK 443

Length = 444

>gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional

 Score =  172 bits (437), Expect = 3e-49
 Identities = 91/274 (33%), Positives = 129/274 (47%), Gaps = 62/274 (22%)

Query: 54  LSQVPN-VALDSSMGILQNLP-------------SILAGHYLDVQPGQKVLDMCAAPGNK 99
           +  +P  + L  + G ++ LP             + L    LD QPG+ +LD CAAPG K
Sbjct: 207 IPGLPQGLRLTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGK 266

Query: 100 LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM 159
            THIA LM D G + A+D+S  R+ KL+E  ++L L SI+    DS        +   + 
Sbjct: 267 TTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR------NLLELKP 320

Query: 160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDK-KIKSYANIQKKLLQAVYRFVSLF 218
           +  +  FDRILLDAPCSG G   +  + ++       KI+  A +Q +LL+++       
Sbjct: 321 QW-RGYFDRILLDAPCSGLGT--LHRHPDARWRQTPEKIQELAPLQAELLESL------- 370

Query: 219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLE 278
                PLLK  G LVY TC+L   ENEA I   L RHP+ +                 LE
Sbjct: 371 ----APLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK-----------------LE 409

Query: 279 AEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK 312
              Q +         P  ++ D  GFF+  LRKK
Sbjct: 410 PPKQKIW--------PHRQDGD--GFFMAVLRKK 433

Length = 434

>gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family

 Score =  148 bits (375), Expect = 5e-42
 Identities = 94/281 (33%), Positives = 132/281 (46%), Gaps = 49/281 (17%)

Query: 44  RGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHY-------------LDVQPGQKVL 90
            GV +E          V  D    I   LP    G               L+ Q  + +L
Sbjct: 32  AGVQLEPLGRYPHALPV-GDLPYSIGS-LPPFENGAVTVQDASSQLDAIALNPQEDEFIL 89

Query: 91  DMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT 150
           DMCAAPG K THIA LM + GT++A+D++K R+ ++   I++L + +I     D+ +I  
Sbjct: 90  DMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVYANIQRLGVFNIIVQEGDARQI-- 147

Query: 151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN-SFLNLDKKIKSYANIQKKLLQ 209
                    KL    FDRILLDAPCSG G   +  + +  +L  +  I   A +QK+LL+
Sbjct: 148 -------DQKLLGGEFDRILLDAPCSGTG--VIRRDPDIKWLRREADIAQLAELQKELLK 198

Query: 210 AVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGM 269
           A              L+K  G+LVY TCS+  EENEAVI + L + P+VELV T    G 
Sbjct: 199 A-----------AWDLVKPGGVLVYSTCSVLPEENEAVIKYFLQKRPDVELVPTGLSEGK 247

Query: 270 KGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLR 310
             LA + ++        +  P  +  D      GFF  KLR
Sbjct: 248 IALAKRIVKG-----GLQSLPHELNRD------GFFFAKLR 277

Length = 277

>gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase

 Score =  142 bits (359), Expect = 9e-40
 Identities = 81/253 (32%), Positives = 115/253 (45%), Gaps = 48/253 (18%)

Query: 73  PSILAGHY-------------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
           P  L G+Y             L+ +  ++VLDM AAPG K T I+ LM + G ++A + S
Sbjct: 46  PEYLFGYYYPQEASSMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANEIS 105

Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
           K R   L   I ++ + +      D  +             L+   FD ILLDAPCSG G
Sbjct: 106 KSRTKALISNINRMGVLNTIVINADGRKFG--------AYLLK---FDAILLDAPCSGEG 154

Query: 180 QRPMFYNANSFLNLDKK-IKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
              +  + +   N  ++ IK  + +QK+L+ A            I  LK  G+LVY TCS
Sbjct: 155 V--IRKDPSRKRNWSEEDIKYCSLLQKELIDA-----------AIDALKPGGVLVYSTCS 201

Query: 239 LSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298
           L VEENE VI +IL + P+V         G +       + E +  + R  P       N
Sbjct: 202 LEVEENEEVIDYILRKRPDVVEE---IIKGDEFFGINIGKGEVKGAL-RVFPQ------N 251

Query: 299 TDTIGFFICKLRK 311
            D  GFF+ KLRK
Sbjct: 252 YDCEGFFVAKLRK 264

[Protein synthesis, tRNA and rRNA base modification]. Length = 264

>gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB

 Score =  130 bits (328), Expect = 6e-34
 Identities = 74/247 (29%), Positives = 105/247 (42%), Gaps = 45/247 (18%)

Query: 69  LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
           +Q+  +     +L  Q  + +LD CAAPG K THI  L      ++ALD  + R+ ++ E
Sbjct: 222 VQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQ-AQVVALDIHEHRLKRVYE 280

Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFY 185
            +K+L L+       D      S   + E+       FDRILLDAPCS  G   + P   
Sbjct: 281 NLKRLGLTIKAETK-DGDGRGPSQWAENEQ-------FDRILLDAPCSATGVIRRHPDI- 331

Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
               +L   + I   A +Q ++L A++           PLLK  G LVY TCS+  EEN 
Sbjct: 332 ---KWLRKPRDIAELAELQSEILDAIW-----------PLLKTGGTLVYATCSVLPEENS 377

Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
             I   L  HP+    +T                 +Q         ++P     D  GFF
Sbjct: 378 EQIKAFLQEHPDFPFEKT--------------GTPEQVRDGGL--QILPHAEEGD--GFF 419

Query: 306 ICKLRKK 312
             KL KK
Sbjct: 420 YAKLIKK 426

This protein is also known as sun protein. The reading frame was originally interpreted as two reading frames, fmu and fmv. The recombinant protein from E. coli was shown to methylate only C967 of small subunit (16S) ribosomal RNA and to produce only m5C at that position. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles [Protein synthesis, tRNA and rRNA base modification]. Length = 426

>gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional

 Score =  129 bits (327), Expect = 1e-33
 Identities = 79/245 (32%), Positives = 108/245 (44%), Gaps = 62/245 (25%)

Query: 76  LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL 135
           LA   L  Q G++VLD CAAPG K  HI L +     ++ALD    R+ ++ E +++L L
Sbjct: 235 LAATLLAPQNGERVLDACAAPGGKTAHI-LELAPQAQVVALDIDAQRLERVRENLQRLGL 293

Query: 136 SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG--QRPMFYNANSFLNL 193
            +    V D+                  + FDRILLDAPCS  G  +R          + 
Sbjct: 294 KA-TVIVGDARDPAQW---------WDGQPFDRILLDAPCSATGVIRR----------HP 333

Query: 194 DKK-------IKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
           D K       I + A +Q ++L A+        W   PLLK  G L+Y TCS+  EENE 
Sbjct: 334 DIKWLRRPEDIAALAALQSEILDAL--------W---PLLKPGGTLLYATCSILPEENEQ 382

Query: 247 VIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFI 306
            I   L RHP+ EL+                   D    Q+ G  L+P + + D  GFF 
Sbjct: 383 QIKAFLARHPDAELL-------------------DTGTPQQPGRQLLPGEEDGD--GFFY 421

Query: 307 CKLRK 311
             L K
Sbjct: 422 ALLIK 426

Length = 427

>gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional

 Score =  120 bits (302), Expect = 2e-30
 Identities = 64/198 (32%), Positives = 107/198 (54%), Gaps = 29/198 (14%)

Query: 80  YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
            ++++PG +VLD CAAPG K T IA LM D G ++A+D S+ ++  +E+  K+L+LSSI+
Sbjct: 232 LMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIE 291

Query: 140 THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKK--I 197
             + D+ R+    Q          ++FDRIL+DAPC+  G      N    L    K   
Sbjct: 292 IKIADAERLTEYVQ----------DTFDRILVDAPCTSLG---TARNHPEVLRRVNKEDF 338

Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
           K  + IQ +++           W+   LL+K GIL+Y TC+++ EEN  V+   ++   +
Sbjct: 339 KKLSEIQLRIVSQA--------WK---LLEKGGILLYSTCTVTKEENTEVVKRFVYEQKD 387

Query: 258 VELVQT---LPQLGMKGL 272
            E++     L +  ++G+
Sbjct: 388 AEVIDIRDKLEEFEVEGI 405

Length = 431

>gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional

 Score =  115 bits (291), Expect = 1e-28
 Identities = 65/192 (33%), Positives = 90/192 (46%), Gaps = 32/192 (16%)

Query: 70  QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
           QN    LA   L+ QPG  VLD+CAAPG K T +A LM + G + A+D+   ++ K+   
Sbjct: 235 QNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSH 294

Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSG---FGQRP-MFY 185
              L ++ I+T   D+                 +E  D ILLDAPC+G    G+R  + +
Sbjct: 295 ASALGITIIETIEGDARSF------------SPEEQPDAILLDAPCTGTGVLGRRAELRW 342

Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
                    +K+     +Q +LL                LLK  G+LVY TCS+  EENE
Sbjct: 343 KLTP-----EKLAELVGLQAELLD-----------HAASLLKPGGVLVYATCSIEPEENE 386

Query: 246 AVIAWILHRHPE 257
             I   L RHPE
Sbjct: 387 LQIEAFLQRHPE 398

Length = 445

>gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

 Score = 96.1 bits (240), Expect = 1e-21
 Identities = 81/230 (35%), Positives = 111/230 (48%), Gaps = 43/230 (18%)

Query: 87  QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDS 145
           Q+VLDM AAPG+K T IA LMN+ G ++A + S  RV  L   I +  +S    TH +D 
Sbjct: 115 QRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTH-FDG 173

Query: 146 TRINTSSQIDIERM--KLQKESFDRILLDAPCSGFGQ-RPMFYNANSFLNLD-KKIKSYA 201
                       R+      E+FD ILLDAPCSG G  R    + ++  N   +     A
Sbjct: 174 ------------RVFGAALPETFDAILLDAPCSGEGTVRK---DPDALKNWSPESNLEIA 218

Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV 261
             Q++L++      S F       LK  G LVY TC+L+ EEN+AV  W+   +P+    
Sbjct: 219 ATQRELIE------SAFH-----ALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAVEF 267

Query: 262 QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
           + L  L   G A K L  E    +  F  P I      D+ GFF+ +LRK
Sbjct: 268 EPLGDL-FPG-AEKALTEE--GFLHVF--PQI-----YDSEGFFVARLRK 306

Length = 470

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 12/92 (13%)

Query: 81  LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
           L VQPG +VLD+   PGN    +A  +   G ++ +D+S+  +               + 
Sbjct: 15  LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLA------------LAKE 62

Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLD 172
                       + D + +     SFD +  D
Sbjct: 63  RAAGLGPNVEFVRGDADGLPFPDGSFDAVRSD 94

Length = 241

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 42/159 (26%)

Query: 84  QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY 143
           + G KVLD+    G     +A  +     ++ +D S+  + K +E  KKL   +++    
Sbjct: 2   KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQG 61

Query: 144 DSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANI 203
           D          ++ +++L+  SFD ++                +N  LN           
Sbjct: 62  DIE--------ELPQLQLEDNSFDVVI----------------SNEVLNHL-------PD 90

Query: 204 QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
             K+L+ + R           +LK  G+L+     L  E
Sbjct: 91  PDKVLEEIIR-----------VLKPGGVLIVSDPVLLSE 118

This family appears to be have methyltransferase activity. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	397
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	100.0
KOG1122|consensus	460		100.0
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	100.0
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	100.0
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	100.0
PRK14903	431	16S rRNA methyltransferase B; Provisional	100.0
PRK14901	434	16S rRNA methyltransferase B; Provisional	100.0
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	100.0
PRK14904	445	16S rRNA methyltransferase B; Provisional	100.0
PRK14902	444	16S rRNA methyltransferase B; Provisional	100.0
PRK10901	427	16S rRNA methyltransferase B; Provisional	100.0
KOG2198|consensus	375		100.0
KOG2360|consensus	413		99.98
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.77
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.77
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.71
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.62
COG4123	248	Predicted O-methyltransferase [General function pr	99.59
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.58
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.57
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.56
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.56
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.54
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.54
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.53
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.52
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.51
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.51
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.49
PRK14967	223	putative methyltransferase; Provisional	99.49
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.46
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.44
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.44
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.43
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.43
PRK07402	196	precorrin-6B methylase; Provisional	99.41
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.41
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.41
COG2890	280	HemK Methylase of polypeptide chain release factor	99.41
PRK04266	226	fibrillarin; Provisional	99.4
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.4
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.4
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.39
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.38
PTZ00146	293	fibrillarin; Provisional	99.38
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.37
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.37
PRK14968	188	putative methyltransferase; Provisional	99.37
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.36
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.36
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.36
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.35
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.35
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.33
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.33
KOG1540|consensus	296		99.33
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.32
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.32
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.3
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.3
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.29
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.29
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.29
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.29
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.28
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.27
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.27
PLN02244	340	tocopherol O-methyltransferase	99.26
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.26
TIGR00438	188	rrmJ cell division protein FtsJ.	99.26
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.26
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.24
KOG2904|consensus	328		99.24
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.24
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.24
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.24
PLN02476	278	O-methyltransferase	99.24
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.23
PRK11207	197	tellurite resistance protein TehB; Provisional	99.22
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.22
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.22
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.22
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.21
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.21
PLN02672	1082	methionine S-methyltransferase	99.2
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.19
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.19
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.18
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.18
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.17
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.16
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	99.16
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.16
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.15
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.15
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.15
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.15
PRK08317	241	hypothetical protein; Provisional	99.14
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.14
PHA03411	279	putative methyltransferase; Provisional	99.12
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.12
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.12
COG4122	219	Predicted O-methyltransferase [General function pr	99.12
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.1
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.1
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.1
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.1
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.1
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.1
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.09
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.08
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.06
PLN02336	475	phosphoethanolamine N-methyltransferase	99.06
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.05
PHA03412	241	putative methyltransferase; Provisional	99.05
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.05
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.03
PRK12335	287	tellurite resistance protein TehB; Provisional	99.01
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.98
PRK04457	262	spermidine synthase; Provisional	98.97
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.97
COG2520	341	Predicted methyltransferase [General function pred	98.97
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.96
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.96
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.96
PLN03075	296	nicotianamine synthase; Provisional	98.95
KOG1270|consensus	282		98.94
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.93
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.92
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.91
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.91
PRK00811	283	spermidine synthase; Provisional	98.91
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.91
PLN02490	340	MPBQ/MSBQ methyltransferase	98.9
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.9
PRK06922	677	hypothetical protein; Provisional	98.9
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.9
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.89
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.89
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.89
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.88
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.88
COG2521	287	Predicted archaeal methyltransferase [General func	98.87
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.85
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.85
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.83
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.82
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.82
KOG1663|consensus	237		98.81
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.81
KOG1271|consensus	227		98.8
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.79
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.76
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.75
PLN02336	475	phosphoethanolamine N-methyltransferase	98.74
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.73
KOG2915|consensus	314		98.73
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.71
PRK03612	521	spermidine synthase; Provisional	98.71
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.7
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.7
KOG2187|consensus	534		98.7
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.7
PRK10742	250	putative methyltransferase; Provisional	98.68
PLN02366	308	spermidine synthase	98.67
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.67
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.67
PRK01581	374	speE spermidine synthase; Validated	98.65
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	98.64
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.63
KOG3191|consensus	209		98.6
TIGR03438	301	probable methyltransferase. This model represents	98.6
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.59
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.59
KOG1541|consensus	270		98.59
PRK05785	226	hypothetical protein; Provisional	98.57
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.57
KOG2671|consensus	421		98.57
PRK06202	232	hypothetical protein; Provisional	98.56
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.54
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	98.52
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.51
KOG4589|consensus	232		98.5
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.47
KOG1596|consensus	317		98.43
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.43
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.42
KOG3420|consensus	185		98.42
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.38
COG4076	252	Predicted RNA methylase [General function predicti	98.35
KOG2899|consensus	288		98.34
PLN02823	336	spermine synthase	98.3
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.3
KOG2730|consensus	263		98.29
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.28
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.28
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.28
COG0286	489	HsdM Type I restriction-modification system methyl	98.25
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.24
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.24
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.23
KOG1499|consensus	346		98.22
KOG1661|consensus	237		98.21
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.17
KOG1099|consensus	294		98.17
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.13
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.09
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.08
KOG4300|consensus	252		98.08
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.05
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.04
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.03
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.01
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.98
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.97
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.96
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.95
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.93
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.93
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.89
KOG0820|consensus	315		97.87
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.86
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.85
KOG1975|consensus	389		97.78
KOG3010|consensus	261		97.72
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.71
KOG1500|consensus	517		97.7
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.69
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.65
KOG1253|consensus	525		97.64
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.63
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.59
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.59
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.57
KOG3115|consensus	249		97.56
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.53
KOG2361|consensus	264		97.5
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.48
KOG1098|consensus	780		97.39
PRK04148	134	hypothetical protein; Provisional	97.37
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.37
KOG1227|consensus	351		97.35
COG3897	218	Predicted methyltransferase [General function pred	97.28
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.2
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.19
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.16
COG1568	354	Predicted methyltransferases [General function pre	97.15
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.15
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.14
PRK00536	262	speE spermidine synthase; Provisional	97.11
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.1
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.02
KOG1709|consensus	271		96.97
TIGR00497	501	hsdM type I restriction system adenine methylase (	96.97
PF13679	141	Methyltransf_32: Methyltransferase domain	96.94
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	96.92
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.85
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.79
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	96.73
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.69
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	96.64
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.64
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	96.49
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.4
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.39
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	96.28
KOG0024|consensus	354		96.01
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	95.98
PHA01634	156	hypothetical protein	95.78
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	95.77
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.73
PF01472	74	PUA: PUA domain; InterPro: IPR002478 The PUA (Pseu	95.52
PRK11524	284	putative methyltransferase; Provisional	95.5
KOG2782|consensus	303		95.44
KOG2078|consensus	495		95.4
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	95.33
COG4798	238	Predicted methyltransferase [General function pred	95.31
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	95.07
COG2016	161	Predicted RNA-binding protein (contains PUA domain	94.92
TIGR00451	107	unchar_dom_2 uncharacterized domain 2. This unchar	94.71
PRK11524	284	putative methyltransferase; Provisional	94.66
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	94.47
KOG3178|consensus	342		94.38
TIGR03684	150	arCOG00985 arCOG04150 universal archaeal PUA-domai	94.2
KOG1269|consensus	364		94.06
PRK14560	160	putative RNA-binding protein; Provisional	93.92
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	93.78
KOG3987|consensus	288		93.57
PRK13699	227	putative methylase; Provisional	93.43
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	93.39
PRK13699	227	putative methylase; Provisional	92.94
PRK10458	467	DNA cytosine methylase; Provisional	92.94
COG3129	292	Predicted SAM-dependent methyltransferase [General	92.74
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	92.38
KOG1562|consensus	337		92.23
KOG3045|consensus	325		92.21
KOG1501|consensus	636		91.17
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	91.03
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	90.62
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	90.57
KOG0822|consensus	649		90.44
PRK05599	246	hypothetical protein; Provisional	90.37
KOG1331|consensus	293		90.31
KOG3201|consensus	201		89.76
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	89.45
PRK08339	263	short chain dehydrogenase; Provisional	89.2
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	89.16
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	88.96
PRK05867	253	short chain dehydrogenase; Provisional	88.87
PRK06172	253	short chain dehydrogenase; Provisional	88.5
PRK07677	252	short chain dehydrogenase; Provisional	88.13
PRK06914	280	short chain dehydrogenase; Provisional	88.0
PRK06701	290	short chain dehydrogenase; Provisional	87.99
PRK06940	275	short chain dehydrogenase; Provisional	87.9
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	87.87
KOG2352|consensus	482		87.7
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	87.61
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	87.59
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	87.59
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	87.53
PRK07102	243	short chain dehydrogenase; Provisional	87.34
COG2933	358	Predicted SAM-dependent methyltransferase [General	87.23
PRK12939	250	short chain dehydrogenase; Provisional	86.91
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	86.85
PRK07576	264	short chain dehydrogenase; Provisional	86.83
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	86.49
KOG2940|consensus	325		86.45
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	86.36
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	86.32
PRK07523	255	gluconate 5-dehydrogenase; Provisional	86.23
KOG1122|consensus	460		86.03
PRK07831	262	short chain dehydrogenase; Provisional	85.82
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	85.67
PRK07097	265	gluconate 5-dehydrogenase; Provisional	85.56
PLN02827	378	Alcohol dehydrogenase-like	85.5
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	85.19
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	84.72
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	84.69
KOG1197|consensus	336		84.61
PRK08324	681	short chain dehydrogenase; Validated	84.53
PRK07109	334	short chain dehydrogenase; Provisional	84.32
PRK13534	639	7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr	84.3
PRK06124	256	gluconate 5-dehydrogenase; Provisional	84.16
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	84.1
PRK08085	254	gluconate 5-dehydrogenase; Provisional	84.1
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	83.94
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	83.87
PRK09242	257	tropinone reductase; Provisional	83.59
PRK12829	264	short chain dehydrogenase; Provisional	83.38
COG2961	279	ComJ Protein involved in catabolism of external DN	83.21
PRK06139	330	short chain dehydrogenase; Provisional	83.19
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	83.08
PRK07326	237	short chain dehydrogenase; Provisional	82.74
PRK06125	259	short chain dehydrogenase; Provisional	82.71
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	82.68
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	82.63
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	82.5
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	82.21
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	82.16
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	82.16
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	82.14
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	82.11
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	82.06
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	82.03
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	81.97
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	81.94
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	81.93
PRK12937	245	short chain dehydrogenase; Provisional	81.92
PRK06181	263	short chain dehydrogenase; Provisional	81.81
PRK07062	265	short chain dehydrogenase; Provisional	81.63
KOG3350|consensus	217		81.58
PRK08862	227	short chain dehydrogenase; Provisional	81.26
PRK08643	256	acetoin reductase; Validated	80.97
KOG2651|consensus	476		80.87
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.78
PRK08589	272	short chain dehydrogenase; Validated	80.76
PRK06949	258	short chain dehydrogenase; Provisional	80.46
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	80.36
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	80.32
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	80.15
PRK08251	248	short chain dehydrogenase; Provisional	80.04

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.4e-50  Score=398.57  Aligned_cols=234  Identities=38%  Similarity=0.602  Sum_probs=197.7

Q ss_pred             cceEEEEccccccCCCcccCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCc-EEEEEeCCHHH
Q psy17793         44 RGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG-TLIALDKSKPR  122 (397)
Q Consensus        44 ~gi~v~~~~~~~~~p~~~~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~-~V~avD~s~~r  122 (397)
                      .++.++...++...|.  +..|++++||.+||+++.+|++++|++||||||||||||+|+|++|.+.+ .|+|+|+|+.|
T Consensus       117 ~~~~i~~~~~~~~~~~--~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~R  194 (355)
T COG0144         117 EVLRIEASGPIGRLPE--FAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKR  194 (355)
T ss_pred             cEEEecCCCCcccChh--hhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHH
Confidence            3444455555555553  67999999999999999999999999999999999999999999998744 45999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHH
Q psy17793        123 VTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKS  199 (397)
Q Consensus       123 l~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~  199 (397)
                      ++.+++|++|+|+.|+.+++.|+..+...        ....++||+||+||||||+|+   +|+..+.++    ..++..
T Consensus       195 l~~l~~nl~RlG~~nv~~~~~d~~~~~~~--------~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~----~~~i~~  262 (355)
T COG0144         195 LKRLRENLKRLGVRNVIVVNKDARRLAEL--------LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRT----PEDIAE  262 (355)
T ss_pred             HHHHHHHHHHcCCCceEEEeccccccccc--------ccccCcCcEEEECCCCCCCcccccCccccccCC----HHHHHH
Confidence            99999999999999999999998766321        012235999999999999994   799999999    899999


Q ss_pred             HHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCch
Q psy17793        200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA  279 (397)
Q Consensus       200 l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~  279 (397)
                      ++.+|++||.+           |+++|||||+|||||||+++||||+||.++|++++++++++....++. +....+   
T Consensus       263 l~~lQ~~iL~~-----------a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~-~~~~~~---  327 (355)
T COG0144         263 LAKLQKEILAA-----------ALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEPVRLPWGP-LFEGLG---  327 (355)
T ss_pred             HHHHHHHHHHH-----------HHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceeecccccccc-cccccc---
Confidence            99999999999           999999999999999999999999999999999999999987655443 222111   


Q ss_pred             hhhcceEEeCCCCCCCCCCCCCCcEEEEeeecc
Q psy17793        280 EDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK  312 (397)
Q Consensus       280 ~~~~~~~r~~P~~~t~~~~~~t~GFFiA~l~K~  312 (397)
                      .....+.|++|+      .+.|+|||+|+|+|.
T Consensus       328 ~~~~~~~r~~p~------~~~~dGFFia~l~k~  354 (355)
T COG0144         328 SELGKTRRLYPH------VHGTDGFFIAKLRKK  354 (355)
T ss_pred             cccCCeEEECCC------CCCCCCeEEEEEEeC
Confidence            123467899885      567799999999985

>KOG1122|consensus

Probab=100.00  E-value=1.6e-50  Score=396.95  Aligned_cols=239  Identities=38%  Similarity=0.598  Sum_probs=210.5

Q ss_pred             ceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHH
Q psy17793         45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRV  123 (397)
Q Consensus        45 gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl  123 (397)
                      ++.+.+...++.+|... ++.|++.+|+.+|.+++++|+|+||++||||||||||||+|+|++|+++|.|+|+|.+..|+
T Consensus       200 ~vgl~v~~s~vpigat~e~lag~~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~  279 (460)
T KOG1122|consen  200 KVGLVVFDSVVPIGATPEYLAGHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL  279 (460)
T ss_pred             cceEEEecCccccCCchhhcccceeeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHH
Confidence            46677777788888887 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHH
Q psy17793        124 TKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSY  200 (397)
Q Consensus       124 ~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l  200 (397)
                      +.+++|+.++|++|..+.+.|...+...        .+. ++||+||+||||||+|.   .+...+..+    .+.+.++
T Consensus       280 ~~l~~n~~rlGv~ntiv~n~D~~ef~~~--------~~~-~~fDRVLLDAPCSGtgvi~K~~~vkt~k~----~~di~~~  346 (460)
T KOG1122|consen  280 KSLKANLHRLGVTNTIVSNYDGREFPEK--------EFP-GSFDRVLLDAPCSGTGVISKDQSVKTNKT----VKDILRY  346 (460)
T ss_pred             HHHHHHHHHhCCCceEEEccCccccccc--------ccC-cccceeeecCCCCCCcccccccccccchh----HHHHHHh
Confidence            9999999999999999999999876422        133 38999999999999883   344444444    5899999


Q ss_pred             HHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchh
Q psy17793        201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAE  280 (397)
Q Consensus       201 ~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~  280 (397)
                      ..+|++||.+           |++++|+||+|||||||+.++|||+||+++|.++|+++++|..+.+|.+|....+....
T Consensus       347 ~~LQr~Llls-----------Ai~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~~~iG~~G~~~~~~~~p  415 (460)
T KOG1122|consen  347 AHLQRELLLS-----------AIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTGLDIGGEGRFRGGRFHP  415 (460)
T ss_pred             HHHHHHHHHH-----------HHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEeccccccCCCCCcccCcccCc
Confidence            9999999999           99999999999999999999999999999999999999999999999988333333333


Q ss_pred             hhcceEEeCCCCCCCCCCCCCCcEEEEeeeccc
Q psy17793        281 DQAVMQRFGPPLIPTDRNTDTIGFFICKLRKKY  313 (397)
Q Consensus       281 ~~~~~~r~~P~~~t~~~~~~t~GFFiA~l~K~~  313 (397)
                      ..+..+||+|+      .|.++|||+|+|+|..
T Consensus       416 sl~~~~r~yPh------~hnmdgffvaKl~k~s  442 (460)
T KOG1122|consen  416 SLKLTRRFYPH------VHNMDGFFVAKLKKAS  442 (460)
T ss_pred             chhheeeecCc------ccCCchHHHHHHHhhc
Confidence            45567899885      7899999999999976

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=100.00  E-value=2.3e-47  Score=391.55  Aligned_cols=215  Identities=36%  Similarity=0.510  Sum_probs=187.1

Q ss_pred             cCCCcEEEechhHHHHHhcc--CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q psy17793         62 LDSSMGILQNLPSILAGHYL--DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ  139 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L--~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~  139 (397)
                      +..|+|++||++||+++.+|  ++++|++|||+||||||||+|+|++|++.|.|+|+|+++.|++.+++|++++|+.||.
T Consensus        88 ~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~  167 (470)
T PRK11933         88 HLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVA  167 (470)
T ss_pred             HHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEE
Confidence            68999999999999999999  8899999999999999999999999998999999999999999999999999999999


Q ss_pred             EEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC---CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhc
Q psy17793        140 THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS  216 (397)
Q Consensus       140 ~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G---~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~  216 (397)
                      +.+.|+..+..          ...+.||+||+||||||+|   ++|+..+.|+    .+.+..++.+|++||.+      
T Consensus       168 v~~~D~~~~~~----------~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s----~~~v~~l~~lQ~~iL~~------  227 (470)
T PRK11933        168 LTHFDGRVFGA----------ALPETFDAILLDAPCSGEGTVRKDPDALKNWS----PESNLEIAATQRELIES------  227 (470)
T ss_pred             EEeCchhhhhh----------hchhhcCeEEEcCCCCCCcccccCHHHhhhCC----HHHHHHHHHHHHHHHHH------
Confidence            99999886531          1235799999999999999   4789999999    89999999999999999      


Q ss_pred             cccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCC-cEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCC
Q psy17793        217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE-VELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPT  295 (397)
Q Consensus       217 ~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~-~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~  295 (397)
                           |+++|||||+|||||||++++|||+||+++|++|++ ++++++...+.  +... ..   ....+.|++|+    
T Consensus       228 -----A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~--~~~~-~~---~~~~~~r~~P~----  292 (470)
T PRK11933        228 -----AFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAVEFEPLGDLFP--GAEK-AL---TEEGFLHVFPQ----  292 (470)
T ss_pred             -----HHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCcEEecccccccc--cccc-cc---CCCCeEEECCC----
Confidence                 999999999999999999999999999999999987 45555532221  1110 00   12246889995    


Q ss_pred             CCCCCCCcEEEEeeeccc
Q psy17793        296 DRNTDTIGFFICKLRKKY  313 (397)
Q Consensus       296 ~~~~~t~GFFiA~l~K~~  313 (397)
                        .++++|||+|+|+|..
T Consensus       293 --~~~~dGfFiA~lrk~~  308 (470)
T PRK11933        293 --IYDSEGFFVARLRKTA  308 (470)
T ss_pred             --CCCCcceeeEEEEecC
Confidence              5789999999999975

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=100.00  E-value=1.3e-47  Score=372.03  Aligned_cols=215  Identities=40%  Similarity=0.606  Sum_probs=188.7

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      +++|++++||++|++++.+|.+++|+.|||+||||||||+++|++|.+.|.|+|+|+++.|++.+++|++++|+.++.+.
T Consensus        62 ~~~G~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~  141 (283)
T PF01189_consen   62 FKNGLFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVI  141 (283)
T ss_dssp             HHTTSEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEE
T ss_pred             hhCCcEEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEE
Confidence            68999999999999999999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC---CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G---~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      ..|++....         ......||+||+||||||+|   ++|+..+.++    .+.+..++.+|++||++        
T Consensus       142 ~~D~~~~~~---------~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~----~~~~~~l~~~Q~~iL~~--------  200 (283)
T PF01189_consen  142 NADARKLDP---------KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRS----PEDIEKLAELQREILDN--------  200 (283)
T ss_dssp             ESHHHHHHH---------HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-----TTHHHHHHHHHHHHHHH--------
T ss_pred             eeccccccc---------cccccccchhhcCCCccchhhhhhccchhhccc----ccccchHHHHHHHHHHH--------
Confidence            888877631         12334699999999999999   4888888888    79999999999999999        


Q ss_pred             cccccccc----cCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCC
Q psy17793        219 DWQGIPLL----KKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIP  294 (397)
Q Consensus       219 ~~~a~~lL----kpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t  294 (397)
                         |++++    ||||++||||||++++|||+||+++|+++++++++++....+..++...    .....+.|++|+   
T Consensus       201 ---a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~r~~P~---  270 (283)
T PF01189_consen  201 ---AAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELVPIPLPEPPPGFKSY----PIGEGCLRILPH---  270 (283)
T ss_dssp             ---HHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEECCESSTCEEESSGG----CTGGGSEEESTT---
T ss_pred             ---HHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccc----cCCCCEEEeCCC---
Confidence               99999    9999999999999999999999999999999999987655443333221    123457899995   


Q ss_pred             CCCCCCCCcEEEEeee
Q psy17793        295 TDRNTDTIGFFICKLR  310 (397)
Q Consensus       295 ~~~~~~t~GFFiA~l~  310 (397)
                         .++++|||+|+||
T Consensus       271 ---~~~~dGFFiA~lr  283 (283)
T PF01189_consen  271 ---RHGTDGFFIAKLR  283 (283)
T ss_dssp             ---TSSSSSEEEEEEE
T ss_pred             ---CCCCCCEEEEEeC
Confidence               6899999999996

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=100.00  E-value=2.3e-44  Score=346.40  Aligned_cols=214  Identities=35%  Similarity=0.526  Sum_probs=183.5

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      +..|++++||.+|++++.+|++++|++|||+|||||+||+++|+++++.+.|+|+|+++.+++.+++|++++|+.+|+++
T Consensus        48 ~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~  127 (264)
T TIGR00446        48 YLSGLYYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVT  127 (264)
T ss_pred             HhCCeEEEECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEe
Confidence            68999999999999999999999999999999999999999999998888999999999999999999999999999999


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC---CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G---~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      ..|+..+.           ...+.||+||+||||||+|   .+|+..+.++    .+.+..++..|+++|++        
T Consensus       128 ~~D~~~~~-----------~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~----~~~~~~l~~~q~~iL~~--------  184 (264)
T TIGR00446       128 NFDGRVFG-----------AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWS----EEDIQEISALQKELIDS--------  184 (264)
T ss_pred             cCCHHHhh-----------hhccCCCEEEEcCCCCCCcccccChhhhhcCC----HHHHHHHHHHHHHHHHH--------
Confidence            99987652           1234699999999999999   4788888888    79999999999999999        


Q ss_pred             cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCCCC
Q psy17793        219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN  298 (397)
Q Consensus       219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~~~  298 (397)
                         |+++|||||+|||||||++++|||+||+++|++++++.+.+..   +.+...... .......+.|++|+      .
T Consensus       185 ---a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~r~~P~------~  251 (264)
T TIGR00446       185 ---AFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEELPK---GDEFFGANK-GKEEVKGALRVFPQ------I  251 (264)
T ss_pred             ---HHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcEEeccC---Ccccccccc-cccccCCeEEECCC------C
Confidence               9999999999999999999999999999999999988766322   111110000 00012347888885      5


Q ss_pred             CCCCcEEEEeeec
Q psy17793        299 TDTIGFFICKLRK  311 (397)
Q Consensus       299 ~~t~GFFiA~l~K  311 (397)
                      ++|+|||+|+|+|
T Consensus       252 ~~~dGfF~a~l~k  264 (264)
T TIGR00446       252 YDCEGFFVAKLRK  264 (264)
T ss_pred             CCCCcEEEEEEEC
Confidence            7899999999986

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=2.6e-41  Score=345.73  Aligned_cols=214  Identities=31%  Similarity=0.557  Sum_probs=183.6

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      +.+|++++||.+|++++.++++++|++|||+|||||+||+++|.+++++++|+|+|+++.|++.+++|++++|++++++.
T Consensus       214 ~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~  293 (431)
T PRK14903        214 IKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIK  293 (431)
T ss_pred             HHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEE
Confidence            78999999999999999999999999999999999999999999998889999999999999999999999999889999


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      ..|+..+.          .+..++||+|++||||||+|.   +|+..+.++    .+.+..++.+|+++|.+        
T Consensus       294 ~~Da~~l~----------~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~----~~~~~~l~~~Q~~iL~~--------  351 (431)
T PRK14903        294 IADAERLT----------EYVQDTFDRILVDAPCTSLGTARNHPEVLRRVN----KEDFKKLSEIQLRIVSQ--------  351 (431)
T ss_pred             ECchhhhh----------hhhhccCCEEEECCCCCCCccccCChHHHHhCC----HHHHHHHHHHHHHHHHH--------
Confidence            99987652          123467999999999999994   788888888    79999999999999999        


Q ss_pred             cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCCCC
Q psy17793        219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN  298 (397)
Q Consensus       219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~~~  298 (397)
                         ++++|||||+|||||||++++|||++|+++|++||++++++....+...+.+  +.. ... . .|+.|+       
T Consensus       352 ---a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~~~~~~~~~~~~--~~~-~~~-~-~~~~P~-------  416 (431)
T PRK14903        352 ---AWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVIDIRDKLEEFEVE--GIW-DGY-G-FLMLPD-------  416 (431)
T ss_pred             ---HHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEEecccccccccccc--ccc-CCC-c-EEECcC-------
Confidence               9999999999999999999999999999999999999887653211110111  000 011 1 477784       


Q ss_pred             CCCCcEEEEeeecc
Q psy17793        299 TDTIGFFICKLRKK  312 (397)
Q Consensus       299 ~~t~GFFiA~l~K~  312 (397)
                      +.++|||+|+|+|.
T Consensus       417 ~~~dGFf~a~L~k~  430 (431)
T PRK14903        417 ETLTPFYVSVLRKM  430 (431)
T ss_pred             CCCCcEEEEEEEeC
Confidence            36899999999986

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=9.4e-41  Score=342.36  Aligned_cols=202  Identities=43%  Similarity=0.638  Sum_probs=179.8

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      +.+|++++||++|++++.++++++|++|||+|||||+||+++|.++++.++|+|+|+++.|++.+++|++++|+++|+++
T Consensus       229 f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~  308 (434)
T PRK14901        229 YEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKIL  308 (434)
T ss_pred             HhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEE
Confidence            67999999999999999999999999999999999999999999988889999999999999999999999999999999


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      +.|+......       ..+..++||+|++||||||+|.   +|+..+.++    ++.+..++.+|.++|.+        
T Consensus       309 ~~D~~~~~~~-------~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~----~~~~~~l~~~Q~~iL~~--------  369 (434)
T PRK14901        309 AADSRNLLEL-------KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQT----PEKIQELAPLQAELLES--------  369 (434)
T ss_pred             eCChhhcccc-------cccccccCCEEEEeCCCCcccccccCcchhhhCC----HHHHHHHHHHHHHHHHH--------
Confidence            9999865311       0012467999999999999993   788888888    79999999999999999        


Q ss_pred             cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCCCC
Q psy17793        219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN  298 (397)
Q Consensus       219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~~~  298 (397)
                         ++++|||||+|||||||++++|||++|.++|++||++++.+.       +              .+++|+      .
T Consensus       370 ---a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~-------~--------------~~~~P~------~  419 (434)
T PRK14901        370 ---LAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEPP-------K--------------QKIWPH------R  419 (434)
T ss_pred             ---HHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCC-------C--------------CccCCC------C
Confidence               999999999999999999999999999999999999886531       0              014564      6


Q ss_pred             CCCCcEEEEeeecc
Q psy17793        299 TDTIGFFICKLRKK  312 (397)
Q Consensus       299 ~~t~GFFiA~l~K~  312 (397)
                      ++|||||+|+|+|.
T Consensus       420 ~~~dGfF~a~l~k~  433 (434)
T PRK14901        420 QDGDGFFMAVLRKK  433 (434)
T ss_pred             CCCCcEEEEEEEeC
Confidence            78999999999986

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=100.00  E-value=8.2e-40  Score=334.75  Aligned_cols=207  Identities=34%  Similarity=0.503  Sum_probs=175.8

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE-
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT-  140 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~-  140 (397)
                      +.+|++++||.+|++++..|++++|++|||+|||||+||++++.+++ .++|+|+|+++.+++.+++|++++|+. +.+ 
T Consensus       215 ~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~  292 (426)
T TIGR00563       215 FEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT-IKAE  292 (426)
T ss_pred             hhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEE
Confidence            78999999999999999999999999999999999999999999885 789999999999999999999999987 444 


Q ss_pred             -EEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhc
Q psy17793        141 -HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS  216 (397)
Q Consensus       141 -~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~  216 (397)
                       ..+|......         ....++||+|++||||||+|.   +|++.+.++    ++++..++.+|+++|.+      
T Consensus       293 ~~~~d~~~~~~---------~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~----~~~~~~l~~lQ~~lL~~------  353 (426)
T TIGR00563       293 TKDGDGRGPSQ---------WAENEQFDRILLDAPCSATGVIRRHPDIKWLRK----PRDIAELAELQSEILDA------  353 (426)
T ss_pred             Eeccccccccc---------cccccccCEEEEcCCCCCCcccccCcchhhcCC----HHHHHHHHHHHHHHHHH------
Confidence             5555543310         013467999999999999994   799988888    79999999999999999      


Q ss_pred             cccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCC
Q psy17793        217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTD  296 (397)
Q Consensus       217 ~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~  296 (397)
                           |+++|||||+|||||||++++|||++|+++|++||++.+....       ... ..    .....|+.|+     
T Consensus       354 -----a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~-------~~~-~~----~~~~~~~~P~-----  411 (426)
T TIGR00563       354 -----IWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDFPFEKTG-------TPE-QV----RDGGLQILPH-----  411 (426)
T ss_pred             -----HHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCeeccCC-------Ccc-cc----CCCcEEECCC-----
Confidence                 9999999999999999999999999999999999988764321       000 00    1124688885     


Q ss_pred             CCCCCCcEEEEeeecc
Q psy17793        297 RNTDTIGFFICKLRKK  312 (397)
Q Consensus       297 ~~~~t~GFFiA~l~K~  312 (397)
                       .++|+|||+|+|+|.
T Consensus       412 -~~~~dGff~a~l~k~  426 (426)
T TIGR00563       412 -AEEGDGFFYAKLIKK  426 (426)
T ss_pred             -CCCCCCeEEEEEEeC
Confidence             578999999999873

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=8.4e-39  Score=328.92  Aligned_cols=214  Identities=34%  Similarity=0.464  Sum_probs=184.2

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      +..|.+++||++|++++.++++.+|++|||+|||||+||+++++.+++.++|+|+|+|+.+++.+++|++++|+.+|++.
T Consensus       227 ~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~  306 (445)
T PRK14904        227 LKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETI  306 (445)
T ss_pred             HhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEE
Confidence            68999999999999999999999999999999999999999999887778999999999999999999999999899999


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      ++|+..+.            ..+.||+|++||||||+|.   +|+..+.++    .+.+..++..|.++|.+        
T Consensus       307 ~~Da~~~~------------~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~----~~~~~~l~~~q~~iL~~--------  362 (445)
T PRK14904        307 EGDARSFS------------PEEQPDAILLDAPCTGTGVLGRRAELRWKLT----PEKLAELVGLQAELLDH--------  362 (445)
T ss_pred             eCcccccc------------cCCCCCEEEEcCCCCCcchhhcCcchhhcCC----HHHHHHHHHHHHHHHHH--------
Confidence            99997652            2357999999999999993   788888888    79999999999999999        


Q ss_pred             cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCCCC
Q psy17793        219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN  298 (397)
Q Consensus       219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~~~  298 (397)
                         +.++|||||+|+|+|||++++|||++|+++|++|+++++++....+... +. ....   ...+.|++|+      .
T Consensus       363 ---a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~l~~~-~~-~~~~---~~~~~~~~P~------~  428 (445)
T PRK14904        363 ---AASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAEPSPGSLPEP-FH-EVAH---PKGAILTLPG------E  428 (445)
T ss_pred             ---HHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEeccccccccc-cc-cccC---CCCcEEECCC------C
Confidence               9999999999999999999999999999999999998876643222110 00 0000   1224678885      3


Q ss_pred             C-CCCcEEEEeeeccc
Q psy17793        299 T-DTIGFFICKLRKKY  313 (397)
Q Consensus       299 ~-~t~GFFiA~l~K~~  313 (397)
                      + ++||||+|+|+|..
T Consensus       429 ~~~~dGfF~a~l~k~~  444 (445)
T PRK14904        429 HEGFDGGFAQRLRKNA  444 (445)
T ss_pred             CCCCCcEEEEEEEecC
Confidence            4 78999999999974

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=5e-38  Score=323.16  Aligned_cols=214  Identities=40%  Similarity=0.637  Sum_probs=186.2

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      +.+|.+++||.+|++++.++++++|++|||+|||||++|++++..+++.++|+|+|+++.+++.+++|++++|+.+|+++
T Consensus       227 ~~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~  306 (444)
T PRK14902        227 FKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETK  306 (444)
T ss_pred             HhCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE
Confidence            68999999999999999999999999999999999999999999887778999999999999999999999999889999


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC---CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G---~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      ++|+......         +. +.||+|++||||||+|   .+|+..+.++    ...+..+..+|.++|.+        
T Consensus       307 ~~D~~~~~~~---------~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~----~~~~~~l~~~q~~iL~~--------  364 (444)
T PRK14902        307 ALDARKVHEK---------FA-EKFDKILVDAPCSGLGVIRRKPDIKYNKT----KEDIESLQEIQLEILES--------  364 (444)
T ss_pred             eCCcccccch---------hc-ccCCEEEEcCCCCCCeeeccCcchhhcCC----HHHHHHHHHHHHHHHHH--------
Confidence            9999775311         22 6799999999999999   3788888887    78999999999999999        


Q ss_pred             cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCCCC
Q psy17793        219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN  298 (397)
Q Consensus       219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~~~  298 (397)
                         +.++|||||+|||||||++++|||++|.++++++++++++++....+.. . ...    ....+.|++|+      .
T Consensus       365 ---a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~-~-~~~----~~~~~~r~~P~------~  429 (444)
T PRK14902        365 ---VAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQHEKPDE-L-VYE----VKDGYLQILPN------D  429 (444)
T ss_pred             ---HHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEeccccccccc-c-ccc----ccCCeEEECCC------C
Confidence               9999999999999999999999999999999999999998865432211 0 000    12346789885      6


Q ss_pred             CCCCcEEEEeeecc
Q psy17793        299 TDTIGFFICKLRKK  312 (397)
Q Consensus       299 ~~t~GFFiA~l~K~  312 (397)
                      ++|+|||+|+|+|.
T Consensus       430 ~~~dGfF~a~l~k~  443 (444)
T PRK14902        430 YGTDGFFIAKLRKK  443 (444)
T ss_pred             CCCCCeEEEEEEEC
Confidence            78999999999986

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=2e-37  Score=317.17  Aligned_cols=204  Identities=36%  Similarity=0.525  Sum_probs=177.6

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      ++.|++++||.+|++++..+++++|++|||+|||||++|+++++.+.+ ++|+|+|+++.+++.+++|++++|+. ++++
T Consensus       221 ~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~  298 (427)
T PRK10901        221 FAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVI  298 (427)
T ss_pred             hhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEE
Confidence            679999999999999999999999999999999999999999998743 79999999999999999999999986 6889


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      ++|+.....         .+..++||.|++||||||+|.   +|++.+.++    ...+..+...|+++|.+        
T Consensus       299 ~~D~~~~~~---------~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~----~~~l~~l~~~q~~iL~~--------  357 (427)
T PRK10901        299 VGDARDPAQ---------WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRR----PEDIAALAALQSEILDA--------  357 (427)
T ss_pred             EcCcccchh---------hcccCCCCEEEECCCCCcccccccCccccccCC----HHHHHHHHHHHHHHHHH--------
Confidence            999876421         123467999999999999993   788877777    78899999999999999        


Q ss_pred             cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCCCC
Q psy17793        219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN  298 (397)
Q Consensus       219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~~~  298 (397)
                         +.++|||||+++|||||++++|||++|.+++++++++++++...    .+           ....|+.|+      .
T Consensus       358 ---a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~----~~-----------~~~~~~~P~------~  413 (427)
T PRK10901        358 ---LWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAELLDTGT----PQ-----------QPGRQLLPG------E  413 (427)
T ss_pred             ---HHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEecCCC----CC-----------CCceEECCC------C
Confidence               99999999999999999999999999999999999998876321    00           112577784      6


Q ss_pred             CCCCcEEEEeeecc
Q psy17793        299 TDTIGFFICKLRKK  312 (397)
Q Consensus       299 ~~t~GFFiA~l~K~  312 (397)
                      ++++|||+|+|+|+
T Consensus       414 ~~~dGff~a~l~k~  427 (427)
T PRK10901        414 EDGDGFFYALLIKR  427 (427)
T ss_pred             CCCCCeEEEEEEEC
Confidence            78999999999985

>KOG2198|consensus

Probab=100.00  E-value=7.6e-34  Score=276.96  Aligned_cols=195  Identities=33%  Similarity=0.456  Sum_probs=157.8

Q ss_pred             ccccCCCcc---cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCC---CcEEEEEeCCHHHHHHH
Q psy17793         53 VLSQVPNVA---LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMND---TGTLIALDKSKPRVTKL  126 (397)
Q Consensus        53 ~~~~~p~~~---~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~---~~~V~avD~s~~rl~~l  126 (397)
                      ++.++|.+-   ..-|.++.||.+|++++.+|+++||++|||||||||+||+++.+.+..   .|.|+|+|.+..|+..+
T Consensus       120 ~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L  199 (375)
T KOG2198|consen  120 PLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNML  199 (375)
T ss_pred             chhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHH
Confidence            344455543   456889999999999999999999999999999999999999887653   46999999999999999


Q ss_pred             HHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---Ccccccc-cCccchHHHHHHHHH
Q psy17793        127 EETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNA-NSFLNLDKKIKSYAN  202 (397)
Q Consensus       127 ~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~-~s~~~~~~~~~~l~~  202 (397)
                      ...++++...++.+...|+..+......+.  .......||+||||+||||.|.   .+++... |+    ...-..+..
T Consensus       200 ~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~--~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~----~~~~~~L~~  273 (375)
T KOG2198|consen  200 VHQLKRLPSPNLLVTNHDASLFPNIYLKDG--NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWK----TQRALGLHA  273 (375)
T ss_pred             HHHHhccCCcceeeecccceeccccccccC--chhhhhhcceeEEecccCCCcccccCchHhhhhhh----hhhccCChH
Confidence            999988887778888888766532100010  1123467999999999999994   5555544 55    355578899


Q ss_pred             HHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCC-cEEEecC
Q psy17793        203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE-VELVQTL  264 (397)
Q Consensus       203 ~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~-~~l~~~~  264 (397)
                      +|.+||.+           ++++||+||+|||||||++|.|||+||+.+|+...+ ++++...
T Consensus       274 LQ~~iL~r-----------gl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~~  325 (375)
T KOG2198|consen  274 LQLRILRR-----------GLRLLKVGGRLVYSTCSLNPIENEAVVQEALQKVGGAVELVDVS  325 (375)
T ss_pred             HHHHHHHH-----------HHHHhcCCCEEEEeccCCCchhhHHHHHHHHHHhcCcccceeec
Confidence            99999999           999999999999999999999999999999998864 6666543

>KOG2360|consensus

Probab=99.98  E-value=2e-32  Score=266.98  Aligned_cols=216  Identities=32%  Similarity=0.514  Sum_probs=180.3

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      ++.|.+++||.+|++++++|++.+|..|+|+||+||+||+|+|..+.+.++|+|+|.++.|.+.+++.+...|+++++..
T Consensus       190 y~~g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~  269 (413)
T KOG2360|consen  190 YKNGKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESV  269 (413)
T ss_pred             cccCceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccc-----cccCccchHHHHHHHHHHHHHHHHHHhhhhc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY-----NANSFLNLDKKIKSYANIQKKLLQAVYRFVS  216 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~-----~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~  216 (397)
                      .+|++.....       ..|  ..+..||+||+|||+|+..+..     ...+    .++++.+...|..++.+||+||+
T Consensus       270 ~~df~~t~~~-------~~~--~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~----~~rL~~L~~fq~~~~~hal~fp~  336 (413)
T KOG2360|consen  270 EGDFLNTATP-------EKF--RDVTYILVDPSCSGSGMVSRQDEDPGAETES----PERLENLQSFQIRILKHALTFPN  336 (413)
T ss_pred             cccccCCCCc-------ccc--cceeEEEeCCCCCCCccccceeeccCCCccc----HHHHHHHHHHHHHHHHHHhcCCc
Confidence            9999875211       122  4688999999999999632221     2223    58999999999999999999996


Q ss_pred             cccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCC-cEEEe--cCcccCCCCCccCCCchhhhcceEEeCCCCC
Q psy17793        217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE-VELVQ--TLPQLGMKGLAHKDLEAEDQAVMQRFGPPLI  293 (397)
Q Consensus       217 ~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~-~~l~~--~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~  293 (397)
                      +            .+++|||||++.||||+||+..|...|+ +.+.+  +.+.|...|.+....    .+.+.|..|.  
T Consensus       337 ~------------k~vvystcs~~reene~vv~d~l~~~p~~~~l~~kK~~p~w~~rg~~~~~~----~e~~lr~~p~--  398 (413)
T KOG2360|consen  337 L------------KRLVYSTCSLHREENEQVVQEVLQQNPDAKRLAPKKVLPAWPHRGLSTFSG----AEHCLRASPK--  398 (413)
T ss_pred             h------------hheeeecchhhhhhhhHHHHHHHhhChhHhhhchhhcchhhhhcCCccccc----cccceecccC--
Confidence            3            3899999999999999999999999886 44445  566676666443322    3457777774  


Q ss_pred             CCCCCCCCCcEEEEeeecc
Q psy17793        294 PTDRNTDTIGFFICKLRKK  312 (397)
Q Consensus       294 t~~~~~~t~GFFiA~l~K~  312 (397)
                          .+.++|||||.|.+.
T Consensus       399 ----~~~~~gffva~fer~  413 (413)
T KOG2360|consen  399 ----STLTIGFFVALFERV  413 (413)
T ss_pred             ----CCCcceEEEEEeecC
Confidence                578999999988763

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.77  E-value=7.6e-18  Score=170.74  Aligned_cols=183  Identities=17%  Similarity=0.225  Sum_probs=133.6

Q ss_pred             ccceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHH
Q psy17793         43 FRGVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP  121 (397)
Q Consensus        43 ~~gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~  121 (397)
                      +..+.+++.+..|.++-.. +++|+|+.|.....++..+.   +|.+|||+|||+|+++++++.  .+..+|+++|+|+.
T Consensus       180 ~~~~~v~E~g~~f~vdl~~g~ktG~flDqr~~R~~~~~~~---~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~  254 (396)
T PRK15128        180 PALLPIEEHGMKLLVDIQGGHKTGYYLDQRDSRLATRRYV---ENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQE  254 (396)
T ss_pred             CccEEEEECCEEEEEecccccccCcChhhHHHHHHHHHhc---CCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHH
Confidence            3557788888888776555 89999999988777766543   578999999999999876554  45669999999999


Q ss_pred             HHHHHHHHHHHhCCC--cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHH
Q psy17793        122 RVTKLEETIKKLQLS--SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS  199 (397)
Q Consensus       122 rl~~l~~n~~~~g~~--~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~  199 (397)
                      +++.+++|++.+|++  +++++++|+..+...       .....++||+|++|||+.....        +  .+......
T Consensus       255 al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~-------~~~~~~~fDlVilDPP~f~~~k--------~--~l~~~~~~  317 (396)
T PRK15128        255 ALDIARQNVELNKLDLSKAEFVRDDVFKLLRT-------YRDRGEKFDVIVMDPPKFVENK--------S--QLMGACRG  317 (396)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEEEccHHHHHHH-------HHhcCCCCCEEEECCCCCCCCh--------H--HHHHHHHH
Confidence            999999999999985  699999999876311       0012357999999999754221        0  01122222


Q ss_pred             HHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC--CCccccHHHHHHHHHHC-CCcEEEe
Q psy17793        200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS--LSVEENEAVIAWILHRH-PEVELVQ  262 (397)
Q Consensus       200 l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS--~~~eEnE~vV~~~L~~~-~~~~l~~  262 (397)
                      +    .+++..           +.++|++||.|+++|||  +..++-.+.+....... ..++++.
T Consensus       318 y----~~l~~~-----------a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~  368 (396)
T PRK15128        318 Y----KDINML-----------AIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE  368 (396)
T ss_pred             H----HHHHHH-----------HHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            2    566677           99999999999999999  44455556666555544 2455554

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.77  E-value=5.7e-18  Score=170.14  Aligned_cols=201  Identities=21%  Similarity=0.171  Sum_probs=147.9

Q ss_pred             ccccccccccccccccccccccceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHH
Q psy17793         23 RLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLT  101 (397)
Q Consensus        23 ~~~~~~~~~~~i~~~~~~~~~~gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~  101 (397)
                      +..+++........+..+  ++.+.|++.+..+.+.... +++|.|..|..+...+...+.   |++|||++|.||++|+
T Consensus       159 r~~~~~~~~~~~~~g~~~--~~~~~i~E~g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv  233 (393)
T COG1092         159 RRREGLKGRSQYLKGEEA--PEEVVIEENGVKFLVDLVDGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSV  233 (393)
T ss_pred             hhhhcccccccccccccC--CCcEEEEeCCeEEEEecCCcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHH
Confidence            344555566665555333  6889999999888886665 899999999999988887765   9999999999999998


Q ss_pred             HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC
Q psy17793        102 HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS--IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG  179 (397)
Q Consensus       102 ~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~--v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G  179 (397)
                      ++|.  ++..+|++||+|...++.+++|++.+|+..  ++++++|+.++...       ..-...+||+|++|||-.+-+
T Consensus       234 ~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~-------~~~~g~~fDlIilDPPsF~r~  304 (393)
T COG1092         234 HAAL--GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRK-------AERRGEKFDLIILDPPSFARS  304 (393)
T ss_pred             HHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHH-------HHhcCCcccEEEECCcccccC
Confidence            8877  566699999999999999999999999853  89999999988632       112345899999999933322


Q ss_pred             CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcccc--HHHHHHHHHH-CC
Q psy17793        180 QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN--EAVIAWILHR-HP  256 (397)
Q Consensus       180 ~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEn--E~vV~~~L~~-~~  256 (397)
                      .              +...+...--.+|+..           +.++|+|||+++.||||-+-..+  .+.|...+.. ..
T Consensus       305 k--------------~~~~~~~rdy~~l~~~-----------~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~  359 (393)
T COG1092         305 K--------------KQEFSAQRDYKDLNDL-----------ALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGR  359 (393)
T ss_pred             c--------------ccchhHHHHHHHHHHH-----------HHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCC
Confidence            1              1112222222667777           99999999999999999665444  3344443333 33


Q ss_pred             CcEEEe
Q psy17793        257 EVELVQ  262 (397)
Q Consensus       257 ~~~l~~  262 (397)
                      ..+.+.
T Consensus       360 ~~~~~~  365 (393)
T COG1092         360 RAQEIE  365 (393)
T ss_pred             cEEEee
Confidence            444443

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.71  E-value=3.2e-17  Score=158.86  Aligned_cols=178  Identities=22%  Similarity=0.277  Sum_probs=124.5

Q ss_pred             ccceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHH
Q psy17793         43 FRGVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP  121 (397)
Q Consensus        43 ~~gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~  121 (397)
                      ++.+.|++.+..|.++... +++|+|..|.....++....   .|.+|||++|.+|+++++++.  ++..+|++||.|..
T Consensus        83 ~~~~~v~E~gl~f~v~l~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~  157 (286)
T PF10672_consen   83 PEFFTVEENGLKFRVDLTDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKR  157 (286)
T ss_dssp             SSEEEEEETTEEEEEESSSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HH
T ss_pred             CCceEEEECCEEEEEEcCCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHH
Confidence            4667889999888887765 89999999999998887764   488999999999999987665  56668999999999


Q ss_pred             HHHHHHHHHHHhCCC--cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHH
Q psy17793        122 RVTKLEETIKKLQLS--SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS  199 (397)
Q Consensus       122 rl~~l~~n~~~~g~~--~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~  199 (397)
                      .++.+++|++.+|++  .++++..|+.+....       . ...++||+|++|||-..-|       ++.   +   .+.
T Consensus       158 al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~-------~-~~~~~fD~IIlDPPsF~k~-------~~~---~---~~~  216 (286)
T PF10672_consen  158 ALEWAKENAALNGLDLDRHRFIQGDVFKFLKR-------L-KKGGRFDLIILDPPSFAKS-------KFD---L---ERD  216 (286)
T ss_dssp             HHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH-------H-HHTT-EEEEEE--SSEESS-------TCE---H---HHH
T ss_pred             HHHHHHHHHHHcCCCccceEEEecCHHHHHHH-------H-hcCCCCCEEEECCCCCCCC-------HHH---H---HHH
Confidence            999999999999975  599999999876421       1 1246899999999943211       111   1   122


Q ss_pred             HHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793        200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       200 l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                      +    .+|+..           +.++|+|||.|+.+|||-+-..+. .++.+.+..++++++.
T Consensus       217 y----~~L~~~-----------a~~ll~~gG~l~~~scs~~i~~~~-l~~~~~~~a~~~~~~~  263 (286)
T PF10672_consen  217 Y----KKLLRR-----------AMKLLKPGGLLLTCSCSHHISPDF-LLEAVAEAAREVEFIE  263 (286)
T ss_dssp             H----HHHHHH-----------HHHTEEEEEEEEEEE--TTS-HHH-HHHHHHHHHHHCEEEE
T ss_pred             H----HHHHHH-----------HHHhcCCCCEEEEEcCCcccCHHH-HHHHHHHhCccceEee
Confidence            3    567777           999999999999999996655432 3333333334555543

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.62  E-value=3.9e-15  Score=161.41  Aligned_cols=164  Identities=19%  Similarity=0.166  Sum_probs=125.5

Q ss_pred             ccceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHH
Q psy17793         43 FRGVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP  121 (397)
Q Consensus        43 ~~gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~  121 (397)
                      ++-+.+++.+..+.+.... +++|.|+.|.....++..+.   +|.+|||+|||+|++++++|..  +..+|+++|+|+.
T Consensus       498 ~~~~~v~e~g~~f~v~~~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~  572 (702)
T PRK11783        498 GEFLEVTEYGAKLLVNLTDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNT  572 (702)
T ss_pred             CceEEEEECCEEEEEEcCCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHH
Confidence            3456677777777766554 78999999988887776654   4789999999999999998873  4557999999999


Q ss_pred             HHHHHHHHHHHhCCC--cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHH
Q psy17793        122 RVTKLEETIKKLQLS--SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS  199 (397)
Q Consensus       122 rl~~l~~n~~~~g~~--~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~  199 (397)
                      +++.+++|++.+|++  +++++++|+.++...          ..++||+|++|||+.+.+....    ..    ..... 
T Consensus       573 al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~----------~~~~fDlIilDPP~f~~~~~~~----~~----~~~~~-  633 (702)
T PRK11783        573 YLEWAERNFALNGLSGRQHRLIQADCLAWLKE----------AREQFDLIFIDPPTFSNSKRME----DS----FDVQR-  633 (702)
T ss_pred             HHHHHHHHHHHhCCCccceEEEEccHHHHHHH----------cCCCcCEEEECCCCCCCCCccc----hh----hhHHH-
Confidence            999999999999986  699999999775311          1468999999999876542100    00    12222 


Q ss_pred             HHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcccc
Q psy17793        200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN  244 (397)
Q Consensus       200 l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEn  244 (397)
                         ...+++..           +.++|+|||.+++++|+-+-...
T Consensus       634 ---~y~~l~~~-----------a~~lL~~gG~l~~~~~~~~~~~~  664 (702)
T PRK11783        634 ---DHVALIKD-----------AKRLLRPGGTLYFSNNKRGFKMD  664 (702)
T ss_pred             ---HHHHHHHH-----------HHHHcCCCCEEEEEeCCccCChh
Confidence               23667887           99999999999999998665543

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.59  E-value=1.7e-14  Score=136.54  Aligned_cols=160  Identities=21%  Similarity=0.228  Sum_probs=117.9

Q ss_pred             CCcEEEechh-------HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         64 SSMGILQNLP-------SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        64 ~g~~~~Qd~~-------S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      ....++|+..       +.+++.+..+....+|||+|||.|..++.+|++..+ .+|++||+++.+.+.+++|++.+++.
T Consensus        16 ~~~~I~q~~~~~~~~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~   94 (248)
T COG4123          16 KQFFIIQDRCGFRYGTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLE   94 (248)
T ss_pred             cceEEEeCCCccccccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcch
Confidence            3444556543       678888888877899999999999999999997643 89999999999999999999999886


Q ss_pred             -cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCC--cccccccCccchHHHHHHHHHHHHHHHHHHhh
Q psy17793        137 -SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR--PMFYNANSFLNLDKKIKSYANIQKKLLQAVYR  213 (397)
Q Consensus       137 -~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~--p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~  213 (397)
                       +|++++.|+..+...         ....+||.|+||||+.-.|..  ++-....      .+.+....+ ..+++.   
T Consensus        95 ~ri~v~~~Di~~~~~~---------~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~------Ar~e~~~~l-e~~i~~---  155 (248)
T COG4123          95 ERIQVIEADIKEFLKA---------LVFASFDLIICNPPYFKQGSRLNENPLRAI------ARHEITLDL-EDLIRA---  155 (248)
T ss_pred             hceeEehhhHHHhhhc---------ccccccCEEEeCCCCCCCccccCcChhhhh------hhhhhcCCH-HHHHHH---
Confidence             499999999887532         233479999999999887743  2111100      111111111 567777   


Q ss_pred             hhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHC
Q psy17793        214 FVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRH  255 (397)
Q Consensus       214 f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~  255 (397)
                              |.++||+||++.+.    ++.|.-.-+...+.++
T Consensus       156 --------a~~~lk~~G~l~~V----~r~erl~ei~~~l~~~  185 (248)
T COG4123         156 --------AAKLLKPGGRLAFV----HRPERLAEIIELLKSY  185 (248)
T ss_pred             --------HHHHccCCCEEEEE----ecHHHHHHHHHHHHhc
Confidence                    99999999999885    6666554555566665

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.58  E-value=9e-15  Score=131.82  Aligned_cols=123  Identities=18%  Similarity=0.208  Sum_probs=96.8

Q ss_pred             chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccc
Q psy17793         71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT  150 (397)
Q Consensus        71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~  150 (397)
                      |.++.++...+...++.+|||+|||+|..++.++... +..+|+++|+|+.+++.+++|++.+++.++++...|..... 
T Consensus        17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-   94 (170)
T PF05175_consen   17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-   94 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-
T ss_pred             CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-
Confidence            6778787777776678899999999999999999864 45689999999999999999999999988999999987652 


Q ss_pred             cchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc
Q psy17793        151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG  230 (397)
Q Consensus       151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG  230 (397)
                                 ..++||.|++|||....+              ...    ....+++++.           +.++|||||
T Consensus        95 -----------~~~~fD~Iv~NPP~~~~~--------------~~~----~~~~~~~i~~-----------a~~~Lk~~G  134 (170)
T PF05175_consen   95 -----------PDGKFDLIVSNPPFHAGG--------------DDG----LDLLRDFIEQ-----------ARRYLKPGG  134 (170)
T ss_dssp             -----------CTTCEEEEEE---SBTTS--------------HCH----HHHHHHHHHH-----------HHHHEEEEE
T ss_pred             -----------cccceeEEEEccchhccc--------------ccc----hhhHHHHHHH-----------HHHhccCCC
Confidence                       357899999999932210              111    1233778888           999999999


Q ss_pred             EEEEE
Q psy17793        231 ILVYC  235 (397)
Q Consensus       231 ~lvys  235 (397)
                      .+++.
T Consensus       135 ~l~lv  139 (170)
T PF05175_consen  135 RLFLV  139 (170)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98665

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.57  E-value=8.3e-15  Score=122.72  Aligned_cols=116  Identities=22%  Similarity=0.292  Sum_probs=89.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      |.+|||+|||+|..+.+++...  ..+++++|+++..++.+++++..+++ .+++++++|+.+...         .+..+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---------~~~~~   69 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE---------PLPDG   69 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH---------TCTTT
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh---------hccCc
Confidence            5789999999999999988874  68999999999999999999999998 469999999977631         24567


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      +||+|++|||+.......            ..   ..+....++++           +.++|||||.+++.+|.
T Consensus        70 ~~D~Iv~npP~~~~~~~~------------~~---~~~~~~~~~~~-----------~~~~L~~gG~~~~~~~~  117 (117)
T PF13659_consen   70 KFDLIVTNPPYGPRSGDK------------AA---LRRLYSRFLEA-----------AARLLKPGGVLVFITPA  117 (117)
T ss_dssp             -EEEEEE--STTSBTT-------------------GGCHHHHHHHH-----------HHHHEEEEEEEEEEEEG
T ss_pred             eeEEEEECCCCccccccc------------hh---hHHHHHHHHHH-----------HHHHcCCCeEEEEEeCC
Confidence            899999999986532110            00   01133567888           99999999999998863

...

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.56  E-value=5.9e-14  Score=126.79  Aligned_cols=142  Identities=23%  Similarity=0.275  Sum_probs=114.8

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRIN  149 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~  149 (397)
                      ..+-..+....|.+++|++++|+|||+|+.|..+| ++++.++|+|+|.++++++..++|++++|++|++++.+|+-..+
T Consensus        19 K~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L   97 (187)
T COG2242          19 KEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL   97 (187)
T ss_pred             HHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh
Confidence            34455677778999999999999999999999999 66789999999999999999999999999999999999997764


Q ss_pred             ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793        150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD  229 (397)
Q Consensus       150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg  229 (397)
                      ..          . .+||+|++    .|+|            ++           ..+|+.           ++..||+|
T Consensus        98 ~~----------~-~~~daiFI----GGg~------------~i-----------~~ile~-----------~~~~l~~g  128 (187)
T COG2242          98 PD----------L-PSPDAIFI----GGGG------------NI-----------EEILEA-----------AWERLKPG  128 (187)
T ss_pred             cC----------C-CCCCEEEE----CCCC------------CH-----------HHHHHH-----------HHHHcCcC
Confidence            22          1 26999998    1111            12           567788           99999999


Q ss_pred             cEEEEEecCCCccccHHHHHHHHHHCCCcEEEecC
Q psy17793        230 GILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL  264 (397)
Q Consensus       230 G~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~  264 (397)
                      |+||..   ....|++......+++.+..+++.+.
T Consensus       129 grlV~n---aitlE~~~~a~~~~~~~g~~ei~~v~  160 (187)
T COG2242         129 GRLVAN---AITLETLAKALEALEQLGGREIVQVQ  160 (187)
T ss_pred             CeEEEE---eecHHHHHHHHHHHHHcCCceEEEEE
Confidence            999986   34478888888888888532665543

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.56  E-value=3.3e-14  Score=134.31  Aligned_cols=123  Identities=25%  Similarity=0.375  Sum_probs=101.6

Q ss_pred             HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh
Q psy17793         75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI  154 (397)
Q Consensus        75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~  154 (397)
                      ......+.+.+|++|||+|||||..+..+++..+ .++|+++|+|+.|++.+++.+...|..+|+++.+|+.+++     
T Consensus        41 ~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-----  114 (238)
T COG2226          41 RALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-----  114 (238)
T ss_pred             HHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-----
Confidence            3455556666999999999999999999999976 8999999999999999999999999888999999999874     


Q ss_pred             hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793        155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY  234 (397)
Q Consensus       155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy  234 (397)
                            |++.+||+|.+                      .-.++...+. .+.|++           +.|.|||||+++.
T Consensus       115 ------f~D~sFD~vt~----------------------~fglrnv~d~-~~aL~E-----------~~RVlKpgG~~~v  154 (238)
T COG2226         115 ------FPDNSFDAVTI----------------------SFGLRNVTDI-DKALKE-----------MYRVLKPGGRLLV  154 (238)
T ss_pred             ------CCCCccCEEEe----------------------eehhhcCCCH-HHHHHH-----------HHHhhcCCeEEEE
Confidence                  78899999997                      1233333334 667888           9999999998876


Q ss_pred             EecCCCccccH
Q psy17793        235 CTCSLSVEENE  245 (397)
Q Consensus       235 sTCS~~~eEnE  245 (397)
                      .  .++..++.
T Consensus       155 l--e~~~p~~~  163 (238)
T COG2226         155 L--EFSKPDNP  163 (238)
T ss_pred             E--EcCCCCch
Confidence            5  56665664

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.54  E-value=1.3e-13  Score=124.87  Aligned_cols=159  Identities=17%  Similarity=0.108  Sum_probs=111.3

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRIN  149 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~  149 (397)
                      -...+.++...+...++++|||+|||+|..+..++...   .+|+++|+|+.+++.+++|++.++. ++++..+|.... 
T Consensus         4 ~~~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-   78 (179)
T TIGR00537         4 PAEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKG-   78 (179)
T ss_pred             CCccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccc-
Confidence            34455666677777778899999999999999888852   3899999999999999999998886 588888887654 


Q ss_pred             ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccch-HHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNL-DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~-~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                                  ..++||.|++|||+......... ..+.  +. ......-.....++|++           +.++|||
T Consensus        79 ------------~~~~fD~Vi~n~p~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~l~~-----------~~~~Lk~  132 (179)
T TIGR00537        79 ------------VRGKFDVILFNPPYLPLEDDLRR-GDWL--DVAIDGGKDGRKVIDRFLDE-----------LPEILKE  132 (179)
T ss_pred             ------------cCCcccEEEECCCCCCCcchhcc-cchh--hhhhhcCCchHHHHHHHHHh-----------HHHhhCC
Confidence                        12479999999998543311000 0000  00 00000112234778888           9999999


Q ss_pred             CcEEEEEecCCCccccHHHHHHHHHHCCCcEEEec
Q psy17793        229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       229 gG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                      ||++++.+++..   ++..+...|++. +++...+
T Consensus       133 gG~~~~~~~~~~---~~~~~~~~l~~~-gf~~~~~  163 (179)
T TIGR00537       133 GGRVQLIQSSLN---GEPDTFDKLDER-GFRYEIV  163 (179)
T ss_pred             CCEEEEEEeccC---ChHHHHHHHHhC-CCeEEEE
Confidence            999999876643   455667777776 4665543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.54  E-value=7.4e-14  Score=133.68  Aligned_cols=138  Identities=15%  Similarity=0.133  Sum_probs=99.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES  165 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~  165 (397)
                      +.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++.++.   +++++|+......         ...++
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~~---------~~~~~  153 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALPT---------ALRGR  153 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcch---------hcCCC
Confidence            4589999999999999998875 346899999999999999999998873   6788887654211         11357


Q ss_pred             ccEEEEcCCCCCCCC----CcccccccCccchHHHH---HHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        166 FDRILLDAPCSGFGQ----RPMFYNANSFLNLDKKI---KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       166 fD~Il~DpPCSg~G~----~p~~~~~~s~~~~~~~~---~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      ||+|++||||..++.    .|+......    ...+   .+-...+++++..           +.++|||||++++.+..
T Consensus       154 fDlVv~NPPy~~~~~~~~~~~e~~~~ep----~~al~gg~dgl~~~~~i~~~-----------a~~~L~~gG~l~l~~~~  218 (251)
T TIGR03704       154 VDILAANAPYVPTDAIALMPPEARDHEP----RVALDGGADGLDVLRRVAAG-----------APDWLAPGGHLLVETSE  218 (251)
T ss_pred             EeEEEECCCCCCchhhhcCCHHHHhCCC----HHHhcCCCcHHHHHHHHHHH-----------HHHhcCCCCEEEEEECc
Confidence            999999999987652    344333322    1111   1223456889999           99999999999998542


Q ss_pred             CCccccHHHHHHHHHHC
Q psy17793        239 LSVEENEAVIAWILHRH  255 (397)
Q Consensus       239 ~~~eEnE~vV~~~L~~~  255 (397)
                          ++.+-+...++++
T Consensus       219 ----~~~~~v~~~l~~~  231 (251)
T TIGR03704       219 ----RQAPLAVEAFARA  231 (251)
T ss_pred             ----chHHHHHHHHHHC
Confidence                3334455666665

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.53  E-value=2.1e-14  Score=135.89  Aligned_cols=132  Identities=21%  Similarity=0.350  Sum_probs=90.3

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d  155 (397)
                      .+...+.+++|++|||+|||+|..+..++..+++.++|+++|+|+.+++.++++++..+..+|+++++|+.+++      
T Consensus        38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp------  111 (233)
T PF01209_consen   38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP------  111 (233)
T ss_dssp             HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--------
T ss_pred             HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc------
Confidence            44556678899999999999999999999888778899999999999999999999999889999999998873      


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                           +++++||.|++     +.|                 +..+.+. .+.|++           +.++|||||+++..
T Consensus       112 -----~~d~sfD~v~~-----~fg-----------------lrn~~d~-~~~l~E-----------~~RVLkPGG~l~il  152 (233)
T PF01209_consen  112 -----FPDNSFDAVTC-----SFG-----------------LRNFPDR-ERALRE-----------MYRVLKPGGRLVIL  152 (233)
T ss_dssp             -----S-TT-EEEEEE-----ES------------------GGG-SSH-HHHHHH-----------HHHHEEEEEEEEEE
T ss_pred             -----CCCCceeEEEH-----Hhh-----------------HHhhCCH-HHHHHH-----------HHHHcCCCeEEEEe
Confidence                 56789999997     111                 1122222 556788           99999999999876


Q ss_pred             ecCCCccccHHHHHHHHHHC
Q psy17793        236 TCSLSVEENEAVIAWILHRH  255 (397)
Q Consensus       236 TCS~~~eEnE~vV~~~L~~~  255 (397)
                        .++..+|. .+..+.+-+
T Consensus       153 --e~~~p~~~-~~~~~~~~y  169 (233)
T PF01209_consen  153 --EFSKPRNP-LLRALYKFY  169 (233)
T ss_dssp             --EEEB-SSH-HHHHHHHH-
T ss_pred             --eccCCCCc-hhhceeeee
Confidence              44555565 666666555

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.52  E-value=7e-13  Score=122.27  Aligned_cols=137  Identities=23%  Similarity=0.310  Sum_probs=104.7

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRI  148 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~  148 (397)
                      +.+...+....+++.++++|||+|||+|..+..+|..++..++|+++|+++.+++.+++|++++|+ .++.++.+|+.+.
T Consensus        25 ~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~  104 (198)
T PRK00377         25 KEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI  104 (198)
T ss_pred             HHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh
Confidence            334455555667889999999999999999999998876678999999999999999999999994 6799999888654


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                      ..          ...+.||+|+++..                   ...+       ..+++.           +.++|||
T Consensus       105 l~----------~~~~~~D~V~~~~~-------------------~~~~-------~~~l~~-----------~~~~Lkp  137 (198)
T PRK00377        105 LF----------TINEKFDRIFIGGG-------------------SEKL-------KEIISA-----------SWEIIKK  137 (198)
T ss_pred             Hh----------hcCCCCCEEEECCC-------------------cccH-------HHHHHH-----------HHHHcCC
Confidence            21          12357999998432                   0111       445666           8899999


Q ss_pred             CcEEEEEecCCCccccHHHHHHHHHHCC
Q psy17793        229 DGILVYCTCSLSVEENEAVIAWILHRHP  256 (397)
Q Consensus       229 gG~lvysTCS~~~eEnE~vV~~~L~~~~  256 (397)
                      ||++++.+|++   ++.+.+...|+++.
T Consensus       138 gG~lv~~~~~~---~~~~~~~~~l~~~g  162 (198)
T PRK00377        138 GGRIVIDAILL---ETVNNALSALENIG  162 (198)
T ss_pred             CcEEEEEeecH---HHHHHHHHHHHHcC
Confidence            99999987753   45556666776663

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.51  E-value=1e-13  Score=137.76  Aligned_cols=123  Identities=21%  Similarity=0.265  Sum_probs=97.4

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      .+.+..+++|+.|||.|||+|+.+..++..   +..|+|+|+|+.+++.+++|++++|+.++.+..+|+.++.       
T Consensus       174 ~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~-------  243 (329)
T TIGR01177       174 MVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP-------  243 (329)
T ss_pred             HHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-------
Confidence            344556789999999999999998876553   4689999999999999999999999988889999998763       


Q ss_pred             HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                          +..+.||.|++||||......              .......++.++|+.           +.+.|||||++++.+
T Consensus       244 ----~~~~~~D~Iv~dPPyg~~~~~--------------~~~~~~~l~~~~l~~-----------~~r~Lk~gG~lv~~~  294 (329)
T TIGR01177       244 ----LSSESVDAIATDPPYGRSTTA--------------AGDGLESLYERSLEE-----------FHEVLKSEGWIVYAV  294 (329)
T ss_pred             ----cccCCCCEEEECCCCcCcccc--------------cCCchHHHHHHHHHH-----------HHHHccCCcEEEEEE
Confidence                234689999999998542110              001123445778888           999999999999987


Q ss_pred             cC
Q psy17793        237 CS  238 (397)
Q Consensus       237 CS  238 (397)
                      ++
T Consensus       295 ~~  296 (329)
T TIGR01177       295 PT  296 (329)
T ss_pred             cC
Confidence            76

This family is found exclusively in the Archaea.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.51  E-value=1.3e-13  Score=114.49  Aligned_cols=111  Identities=23%  Similarity=0.275  Sum_probs=84.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      ||.+|||+|||+|..+..+++.. +..+|+|+|+|+.+++.+++++.+.+. .+|++++.|+ ....          ...
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~----------~~~   68 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP----------DFL   68 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT----------TTS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc----------ccC
Confidence            57899999999999999999953 567899999999999999999976665 5799999999 2211          133


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                      +.||+|+++- .+.        ...-     ..     +.++++|++           +.++|+|||++++++|
T Consensus        69 ~~~D~v~~~~-~~~--------~~~~-----~~-----~~~~~~l~~-----------~~~~L~pgG~lvi~~~  112 (112)
T PF12847_consen   69 EPFDLVICSG-FTL--------HFLL-----PL-----DERRRVLER-----------IRRLLKPGGRLVINTC  112 (112)
T ss_dssp             SCEEEEEECS-GSG--------GGCC-----HH-----HHHHHHHHH-----------HHHHEEEEEEEEEEE-
T ss_pred             CCCCEEEECC-Ccc--------cccc-----ch-----hHHHHHHHH-----------HHHhcCCCcEEEEEEC
Confidence            5799999843 100        0000     11     334677888           9999999999999988

...

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.49  E-value=6.9e-13  Score=129.24  Aligned_cols=138  Identities=16%  Similarity=0.240  Sum_probs=99.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ..++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.+++|++++|+. +|+++.+|+...            +
T Consensus       119 ~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~------------~  185 (284)
T TIGR03533       119 PEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA------------L  185 (284)
T ss_pred             cCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc------------c
Confidence            3456799999999999999999875 4579999999999999999999999985 599999998643            2


Q ss_pred             cccCccEEEEcCCCCCCCCC----cccccccCccchHHHH----HHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793        162 QKESFDRILLDAPCSGFGQR----PMFYNANSFLNLDKKI----KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV  233 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~----p~~~~~~s~~~~~~~~----~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv  233 (397)
                      ...+||.|++||||...+..    ++. ....    ...+    ..+ ...+.++..           +.++|+|||+++
T Consensus       186 ~~~~fD~Iv~NPPy~~~~~~~~l~~~~-~~ep----~~al~gg~dGl-~~~~~il~~-----------a~~~L~~gG~l~  248 (284)
T TIGR03533       186 PGRKYDLIVSNPPYVDAEDMADLPAEY-HHEP----ELALASGEDGL-DLVRRILAE-----------AADHLNENGVLV  248 (284)
T ss_pred             CCCCccEEEECCCCCCccchhhCCHhh-hcCH----HHHhcCCCcHH-HHHHHHHHH-----------HHHhcCCCCEEE
Confidence            33579999999999876521    111 1111    0111    112 334778888           999999999998


Q ss_pred             EEecCCCccccHHHHHHHHHHC
Q psy17793        234 YCTCSLSVEENEAVIAWILHRH  255 (397)
Q Consensus       234 ysTCS~~~eEnE~vV~~~L~~~  255 (397)
                      +.+.   .  +.+.+...+..+
T Consensus       249 ~e~g---~--~~~~v~~~~~~~  265 (284)
T TIGR03533       249 VEVG---N--SMEALEEAYPDV  265 (284)
T ss_pred             EEEC---c--CHHHHHHHHHhC
Confidence            7643   2  223555566554

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK14967 putative methyltransferase; Provisional

Probab=99.49  E-value=1e-12  Score=123.46  Aligned_cols=154  Identities=20%  Similarity=0.222  Sum_probs=103.9

Q ss_pred             CCcEEEechhHHHHHhcc---CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q psy17793         64 SSMGILQNLPSILAGHYL---DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT  140 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L---~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~  140 (397)
                      .|.|..+..+ .++...+   ...++++|||+|||+|..+..++..  +.++|+++|+|+.+++.+++|++.+++ ++.+
T Consensus        13 ~g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~   88 (223)
T PRK14967         13 PGVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-DVDV   88 (223)
T ss_pred             CCCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEE
Confidence            4555555544 4443433   4678899999999999999988874  345999999999999999999999987 5788


Q ss_pred             EEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC------CcccccccCccchHHHHHHHHHHHHHHHHHHhhh
Q psy17793        141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ------RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRF  214 (397)
Q Consensus       141 ~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~------~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f  214 (397)
                      +..|+...            +..++||+|++|||+.....      .+...+...    ...    ...+..++++    
T Consensus        89 ~~~d~~~~------------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~l~~----  144 (223)
T PRK14967         89 RRGDWARA------------VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAG----PDG----RAVLDRLCDA----  144 (223)
T ss_pred             EECchhhh------------ccCCCeeEEEECCCCCCCCcccccccChhHhhhCC----CcH----HHHHHHHHHH----
Confidence            88887653            23468999999999654321      111111111    011    1233678888    


Q ss_pred             hccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHC
Q psy17793        215 VSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRH  255 (397)
Q Consensus       215 ~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~  255 (397)
                             +.++||+||++++.+-+..   +...+...++..
T Consensus       145 -------a~~~Lk~gG~l~~~~~~~~---~~~~~~~~l~~~  175 (223)
T PRK14967        145 -------APALLAPGGSLLLVQSELS---GVERTLTRLSEA  175 (223)
T ss_pred             -------HHHhcCCCcEEEEEEeccc---CHHHHHHHHHHC
Confidence                   9999999999988644432   222344555554

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.46  E-value=7.1e-13  Score=123.76  Aligned_cols=91  Identities=23%  Similarity=0.385  Sum_probs=78.1

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ  153 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~  153 (397)
                      ...+...++++++++|||+|||+|..+..+|.+.+..++|+++|+++.+++.++++++++|+++++++.+|+.....   
T Consensus        66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~---  142 (215)
T TIGR00080        66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE---  142 (215)
T ss_pred             HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc---
Confidence            34555678889999999999999999999999876668899999999999999999999999999999999875421   


Q ss_pred             hhHHHhhhcccCccEEEEcCCC
Q psy17793        154 IDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                              ....||+|++|+++
T Consensus       143 --------~~~~fD~Ii~~~~~  156 (215)
T TIGR00080       143 --------PLAPYDRIYVTAAG  156 (215)
T ss_pred             --------ccCCCCEEEEcCCc
Confidence                    23579999998763

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.44  E-value=2e-12  Score=122.53  Aligned_cols=148  Identities=17%  Similarity=0.148  Sum_probs=102.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      .+.+|||+|||+|..+..++... +...++++|+++.+++.++++++.+++.++++..+|+...            +..+
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~------------~~~~  153 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP------------LPGG  153 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc------------CcCC
Confidence            34589999999999999999875 4569999999999999999999999998899999998653            2346


Q ss_pred             CccEEEEcCCCCCCCC----CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793        165 SFDRILLDAPCSGFGQ----RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS  240 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~----~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~  240 (397)
                      +||.|++|||++..+.    .+..........+...-..+... ..++.+           +.++|+|||.+++.. +  
T Consensus       154 ~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~i~~-----------~~~~L~~gG~~~~~~-~--  218 (251)
T TIGR03534       154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFY-RRIIAQ-----------APRLLKPGGWLLLEI-G--  218 (251)
T ss_pred             ceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHH-HHHHHH-----------HHHhcccCCEEEEEE-C--
Confidence            8999999999987652    11111100000000000111112 567888           999999999999862 2  


Q ss_pred             ccccHHHHHHHHHHCCCcEEEe
Q psy17793        241 VEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       241 ~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                       ....+.+..+++++ +++.+.
T Consensus       219 -~~~~~~~~~~l~~~-gf~~v~  238 (251)
T TIGR03534       219 -YDQGEAVRALFEAA-GFADVE  238 (251)
T ss_pred             -ccHHHHHHHHHHhC-CCCceE
Confidence             23334566667766 354433

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=2.2e-12  Score=121.57  Aligned_cols=126  Identities=18%  Similarity=0.272  Sum_probs=105.4

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQT  140 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~  140 (397)
                      ++-+--++-.+.+.+++..+++.||++|||+|+|+|..|..||..+++.|+|+.+|+.+..++.+++|++.+|+.+ |..
T Consensus        71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~  150 (256)
T COG2519          71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL  150 (256)
T ss_pred             CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEE
Confidence            3444445666677788889999999999999999999999999988889999999999999999999999999987 999


Q ss_pred             EEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccc
Q psy17793        141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDW  220 (397)
Q Consensus       141 ~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~  220 (397)
                      ...|..+..            ....||+|++|-|                 +.           .+.|++          
T Consensus       151 ~~~Dv~~~~------------~~~~vDav~LDmp-----------------~P-----------W~~le~----------  180 (256)
T COG2519         151 KLGDVREGI------------DEEDVDAVFLDLP-----------------DP-----------WNVLEH----------  180 (256)
T ss_pred             Eeccccccc------------cccccCEEEEcCC-----------------Ch-----------HHHHHH----------
Confidence            999988763            2348999999998                 12           345666          


Q ss_pred             cccccccCCcEE-EEEecC
Q psy17793        221 QGIPLLKKDGIL-VYCTCS  238 (397)
Q Consensus       221 ~a~~lLkpgG~l-vysTCS  238 (397)
                       +.+.|||||.+ +|+.|.
T Consensus       181 -~~~~Lkpgg~~~~y~P~v  198 (256)
T COG2519         181 -VSDALKPGGVVVVYSPTV  198 (256)
T ss_pred             -HHHHhCCCcEEEEEcCCH
Confidence             88899999975 676665

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.43  E-value=3.5e-12  Score=116.36  Aligned_cols=134  Identities=15%  Similarity=0.165  Sum_probs=102.9

Q ss_pred             EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793         69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI  148 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~  148 (397)
                      .++....++...+.+.++.+|||+|||+|..+..++... +.++|+++|+++.+++.+++|++++++.++++..+|+...
T Consensus        15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~   93 (187)
T PRK08287         15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE   93 (187)
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh
Confidence            455555666677788889999999999999999998864 4679999999999999999999999988899988886421


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                                   ..++||+|+++..                   ...+       ..+++.           +.++|||
T Consensus        94 -------------~~~~~D~v~~~~~-------------------~~~~-------~~~l~~-----------~~~~Lk~  123 (187)
T PRK08287         94 -------------LPGKADAIFIGGS-------------------GGNL-------TAIIDW-----------SLAHLHP  123 (187)
T ss_pred             -------------cCcCCCEEEECCC-------------------ccCH-------HHHHHH-----------HHHhcCC
Confidence                         1357999998532                   0111       345666           8889999


Q ss_pred             CcEEEEEecCCCccccHHHHHHHHHHCC
Q psy17793        229 DGILVYCTCSLSVEENEAVIAWILHRHP  256 (397)
Q Consensus       229 gG~lvysTCS~~~eEnE~vV~~~L~~~~  256 (397)
                      ||++++...   ..++.+.+..++++++
T Consensus       124 gG~lv~~~~---~~~~~~~~~~~l~~~g  148 (187)
T PRK08287        124 GGRLVLTFI---LLENLHSALAHLEKCG  148 (187)
T ss_pred             CeEEEEEEe---cHhhHHHHHHHHHHCC
Confidence            999998632   3456666777888764

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.43  E-value=1.7e-12  Score=127.85  Aligned_cols=123  Identities=20%  Similarity=0.268  Sum_probs=90.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhcccC
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQKES  165 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~~~  165 (397)
                      .+|||+|||+|..+..++... +..+|+|+|+|+.+++.+++|++++|+. +|+++++|+...            ....+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~------------l~~~~  201 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA------------LPGRR  201 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh------------CCCCC
Confidence            689999999999999999864 4579999999999999999999999985 599999998643            12357


Q ss_pred             ccEEEEcCCCCCCCC----CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        166 FDRILLDAPCSGFGQ----RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       166 fD~Il~DpPCSg~G~----~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      ||+|++||||.+.+.    .++.. ......+...-..+ ...+.++..           +.++|+|||++++.
T Consensus       202 fDlIvsNPPyi~~~~~~~l~~~~~-~eP~~AL~gg~dGl-~~~~~i~~~-----------a~~~L~pgG~l~~E  262 (307)
T PRK11805        202 YDLIVSNPPYVDAEDMADLPAEYR-HEPELALAAGDDGL-DLVRRILAE-----------APDYLTEDGVLVVE  262 (307)
T ss_pred             ccEEEECCCCCCccchhhcCHhhc-cCccceeeCCCchH-HHHHHHHHH-----------HHHhcCCCCEEEEE
Confidence            999999999988652    11111 11100000001112 233778888           99999999999875

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.41  E-value=6e-12  Score=115.73  Aligned_cols=147  Identities=21%  Similarity=0.264  Sum_probs=108.1

Q ss_pred             CcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcc
Q psy17793         65 SMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD  144 (397)
Q Consensus        65 g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D  144 (397)
                      |.-+.|+..+.++...++++++++|||+|||+|..+..++... +.++|+++|+|+.+++.+++|++++++.+++++.+|
T Consensus        20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d   98 (196)
T PRK07402         20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS   98 (196)
T ss_pred             CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence            4446688888888888898999999999999999999988753 458999999999999999999999999889999999


Q ss_pred             cccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q psy17793        145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIP  224 (397)
Q Consensus       145 ~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~  224 (397)
                      +.....          .....+|.|++|..                    ..+       .++++.           +.+
T Consensus        99 ~~~~~~----------~~~~~~d~v~~~~~--------------------~~~-------~~~l~~-----------~~~  130 (196)
T PRK07402         99 APECLA----------QLAPAPDRVCIEGG--------------------RPI-------KEILQA-----------VWQ  130 (196)
T ss_pred             hHHHHh----------hCCCCCCEEEEECC--------------------cCH-------HHHHHH-----------HHH
Confidence            854311          11234688877532                    001       455666           888


Q ss_pred             cccCCcEEEEEecCCCccccHHHHHHHHHHCC--CcEEEec
Q psy17793        225 LLKKDGILVYCTCSLSVEENEAVIAWILHRHP--EVELVQT  263 (397)
Q Consensus       225 lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~--~~~l~~~  263 (397)
                      +|+|||++++.+++   .+.-..+...+++..  +++.+.+
T Consensus       131 ~LkpgG~li~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  168 (196)
T PRK07402        131 YLKPGGRLVATASS---LEGLYAISEGLAQLQARNIEVVQA  168 (196)
T ss_pred             hcCCCeEEEEEeec---HHHHHHHHHHHHhcCCCCceEEEE
Confidence            99999999999775   222223444455432  4555443

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.41  E-value=5.3e-12  Score=127.85  Aligned_cols=170  Identities=15%  Similarity=0.116  Sum_probs=109.8

Q ss_pred             CCcEEEechhHHHHHhccC-CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEE
Q psy17793         64 SSMGILQNLPSILAGHYLD-VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV  142 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L~-~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~  142 (397)
                      .+.++....+..++..++. ..++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.+++|+++++. +++++.
T Consensus       229 p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~  306 (423)
T PRK14966        229 PNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA-RVEFAH  306 (423)
T ss_pred             CCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEE
Confidence            3433333334444444443 3456799999999999999888753 467999999999999999999999886 789999


Q ss_pred             cccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCC---cccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy17793        143 YDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR---PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD  219 (397)
Q Consensus       143 ~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~---p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~  219 (397)
                      +|......          ...++||.|++|||+...+..   +..........+...-..+.- -++++..         
T Consensus       307 gDl~e~~l----------~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~-yr~Ii~~---------  366 (423)
T PRK14966        307 GSWFDTDM----------PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSC-IRTLAQG---------  366 (423)
T ss_pred             cchhcccc----------ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHH-HHHHHHH---------
Confidence            99865310          013479999999999776521   111000000000000011111 2678888         


Q ss_pred             ccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793        220 WQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       220 ~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                        +.++|+|||.+++.   + .....+.+..++++. ++..+.
T Consensus       367 --a~~~LkpgG~lilE---i-G~~Q~e~V~~ll~~~-Gf~~v~  402 (423)
T PRK14966        367 --APDRLAEGGFLLLE---H-GFDQGAAVRGVLAEN-GFSGVE  402 (423)
T ss_pred             --HHHhcCCCcEEEEE---E-CccHHHHHHHHHHHC-CCcEEE
Confidence              99999999998775   2 234455677777765 344433

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.41  E-value=5e-12  Score=123.09  Aligned_cols=139  Identities=19%  Similarity=0.197  Sum_probs=98.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhccc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      +.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++++++.+ ++++.+|....            +...
T Consensus       115 ~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~------------~~~~  181 (284)
T TIGR00536       115 ILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP------------LAGQ  181 (284)
T ss_pred             CCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc------------CcCC
Confidence            3689999999999999999875 45799999999999999999999999865 99999998653            2223


Q ss_pred             CccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793        165 SFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV  241 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~  241 (397)
                      .||+|++|||+.....   .++.........+...-..+. ..++++..           +.++|+|||.+++.+..   
T Consensus       182 ~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~-~~~~ii~~-----------a~~~L~~gG~l~~e~g~---  246 (284)
T TIGR00536       182 KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLN-ILRQIIEL-----------APDYLKPNGFLVCEIGN---  246 (284)
T ss_pred             CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHH-HHHHHHHH-----------HHHhccCCCEEEEEECc---
Confidence            7999999999977652   111111111000001111222 33788888           99999999999987543   


Q ss_pred             cccHHHHHHHHH
Q psy17793        242 EENEAVIAWILH  253 (397)
Q Consensus       242 eEnE~vV~~~L~  253 (397)
                       ...+.+..++.
T Consensus       247 -~q~~~~~~~~~  257 (284)
T TIGR00536       247 -WQQKSLKELLR  257 (284)
T ss_pred             -cHHHHHHHHHH
Confidence             23334555555

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=5e-12  Score=122.92  Aligned_cols=171  Identities=17%  Similarity=0.161  Sum_probs=111.5

Q ss_pred             cCCCcEEEechhHHHHHhcc-CCCCCC-eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q psy17793         62 LDSSMGILQNLPSILAGHYL-DVQPGQ-KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ  139 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L-~~~~g~-~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~  139 (397)
                      ..++.++....+-.++-.++ ...... +|||+|||+|..++.+|... +...|+|+|+|+.+++.+++|++++|+.++.
T Consensus        85 v~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~  163 (280)
T COG2890          85 VDEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVL  163 (280)
T ss_pred             eCCCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEE
Confidence            34555555565655655543 222223 79999999999999999875 3469999999999999999999999987766


Q ss_pred             EEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC---CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhc
Q psy17793        140 THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS  216 (397)
Q Consensus       140 ~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G---~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~  216 (397)
                      ++..|.....             .++||+|++|||+-..-   ..|+.........+...-..+.-. ++++..      
T Consensus       164 ~~~~dlf~~~-------------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~-~~i~~~------  223 (280)
T COG2890         164 VVQSDLFEPL-------------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVY-RRILGE------  223 (280)
T ss_pred             EEeeeccccc-------------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHH-HHHHHh------
Confidence            6666765532             24899999999996654   122211111100010111233333 788888      


Q ss_pred             cccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793        217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       217 ~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                           +.++|++||.+++. ++   ....+.|..++.+.+.+..+.
T Consensus       224 -----a~~~l~~~g~l~le-~g---~~q~~~v~~~~~~~~~~~~v~  260 (280)
T COG2890         224 -----APDILKPGGVLILE-IG---LTQGEAVKALFEDTGFFEIVE  260 (280)
T ss_pred             -----hHHHcCCCcEEEEE-EC---CCcHHHHHHHHHhcCCceEEE
Confidence                 99999999988875 22   233445666666664344343

>PRK04266 fibrillarin; Provisional

Probab=99.40  E-value=6.6e-12  Score=118.42  Aligned_cols=115  Identities=19%  Similarity=0.297  Sum_probs=86.6

Q ss_pred             HHHHHhc--cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc
Q psy17793         74 SILAGHY--LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS  151 (397)
Q Consensus        74 S~l~~~~--L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~  151 (397)
                      +.+++.+  +++++|++|||+|||+|.++.+++..++ .++|+|+|+++.+++.+.+++++.  .||.++.+|+......
T Consensus        59 ~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~  135 (226)
T PRK04266         59 AAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERY  135 (226)
T ss_pred             HHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchh
Confidence            3444433  7788999999999999999999999875 689999999999999988887764  6789999998642100


Q ss_pred             chhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcE
Q psy17793        152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI  231 (397)
Q Consensus       152 ~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~  231 (397)
                             ..+ .++||+|++|.+              .    +..       ...+|++           +.++|||||.
T Consensus       136 -------~~l-~~~~D~i~~d~~--------------~----p~~-------~~~~L~~-----------~~r~LKpGG~  171 (226)
T PRK04266        136 -------AHV-VEKVDVIYQDVA--------------Q----PNQ-------AEIAIDN-----------AEFFLKDGGY  171 (226)
T ss_pred             -------hhc-cccCCEEEECCC--------------C----hhH-------HHHHHHH-----------HHHhcCCCcE
Confidence                   012 256999998754              0    010       1335677           8899999999


Q ss_pred             EEEE
Q psy17793        232 LVYC  235 (397)
Q Consensus       232 lvys  235 (397)
                      ++.+
T Consensus       172 lvI~  175 (226)
T PRK04266        172 LLLA  175 (226)
T ss_pred             EEEE
Confidence            9984

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.40  E-value=3.3e-12  Score=119.26  Aligned_cols=99  Identities=22%  Similarity=0.321  Sum_probs=82.0

Q ss_pred             CCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc
Q psy17793         64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY  143 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~  143 (397)
                      .|..+.+......+...+++++|++|||+|||+|..|..++.+++..++|+++|+++..++.++++++++|..++++..+
T Consensus        55 ~g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g  134 (212)
T PRK13942         55 YGQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG  134 (212)
T ss_pred             CCCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence            34444454445566677888999999999999999999999987767899999999999999999999999999999999


Q ss_pred             ccccccccchhhHHHhhhcccCccEEEEcC
Q psy17793        144 DSTRINTSSQIDIERMKLQKESFDRILLDA  173 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~Dp  173 (397)
                      |+....           .....||+|+++.
T Consensus       135 d~~~~~-----------~~~~~fD~I~~~~  153 (212)
T PRK13942        135 DGTLGY-----------EENAPYDRIYVTA  153 (212)
T ss_pred             CcccCC-----------CcCCCcCEEEECC
Confidence            987542           1336799999854

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.40  E-value=1.1e-11  Score=119.32  Aligned_cols=145  Identities=16%  Similarity=0.137  Sum_probs=100.9

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ...++.+|||+|||+|..+..++... +...|+++|+|+.+++.+++|++.....++.++..|+...            .
T Consensus       105 ~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~------------~  171 (275)
T PRK09328        105 LLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP------------L  171 (275)
T ss_pred             cccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc------------C
Confidence            34567899999999999999999876 4579999999999999999999844445799999998543            1


Q ss_pred             cccCccEEEEcCCCCCCCC----CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        162 QKESFDRILLDAPCSGFGQ----RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~----~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                      ..++||+|++||||...+.    .++.........+... ..-.....+++.+           +.++||+||.+++.+-
T Consensus       172 ~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g-~~g~~~~~~~~~~-----------~~~~Lk~gG~l~~e~g  239 (275)
T PRK09328        172 PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGG-EDGLDFYRRIIEQ-----------APRYLKPGGWLLLEIG  239 (275)
T ss_pred             CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCC-CCHHHHHHHHHHH-----------HHHhcccCCEEEEEEC
Confidence            2468999999999987652    2222211110000000 0112334778888           9999999999998532


Q ss_pred             CCCccccHHHHHHHHHHC
Q psy17793        238 SLSVEENEAVIAWILHRH  255 (397)
Q Consensus       238 S~~~eEnE~vV~~~L~~~  255 (397)
                         . ...+.+..++++.
T Consensus       240 ---~-~~~~~~~~~l~~~  253 (275)
T PRK09328        240 ---Y-DQGEAVRALLAAA  253 (275)
T ss_pred             ---c-hHHHHHHHHHHhC
Confidence               2 2233466666654

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.39  E-value=3.4e-12  Score=112.43  Aligned_cols=111  Identities=26%  Similarity=0.334  Sum_probs=89.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      +.+.+|||+|||+|..+..++..+.+.++++++|+|+.+++.+++++++++++++++.++|+.++. .       . +. 
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~-~-------~-~~-   71 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLP-Q-------E-LE-   71 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGC-G-------C-SS-
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccc-c-------c-cC-
Confidence            467899999999999999999766678899999999999999999999999999999999998852 1       0 22 


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      +.||+|+++.++.          ..      .       ....+|+.           +.++||+||+++.+.+.
T Consensus        72 ~~~D~I~~~~~l~----------~~------~-------~~~~~l~~-----------~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   72 EKFDIIISNGVLH----------HF------P-------DPEKVLKN-----------IIRLLKPGGILIISDPN  112 (152)
T ss_dssp             TTEEEEEEESTGG----------GT------S-------HHHHHHHH-----------HHHHEEEEEEEEEEEEE
T ss_pred             CCeeEEEEcCchh----------hc------c-------CHHHHHHH-----------HHHHcCCCcEEEEEECC
Confidence            6899999976630          00      1       11456667           89999999999988776

...

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.38  E-value=7.1e-12  Score=116.34  Aligned_cols=89  Identities=18%  Similarity=0.275  Sum_probs=75.2

Q ss_pred             HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccch
Q psy17793         75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQ  153 (397)
Q Consensus        75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~  153 (397)
                      ......++++++++|||+|||+|..+..++.+++..++|+++|+++.+++.+++|++++++. ++++..+|+....    
T Consensus        62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~----  137 (205)
T PRK13944         62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL----  137 (205)
T ss_pred             HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC----
Confidence            34456678889999999999999999999998766789999999999999999999999986 4899999987642    


Q ss_pred             hhHHHhhhcccCccEEEEcCC
Q psy17793        154 IDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~DpP  174 (397)
                             ....+||+|+++..
T Consensus       138 -------~~~~~fD~Ii~~~~  151 (205)
T PRK13944        138 -------EKHAPFDAIIVTAA  151 (205)
T ss_pred             -------ccCCCccEEEEccC
Confidence                   12358999999754

>PTZ00146 fibrillarin; Provisional

Probab=99.38  E-value=1e-11  Score=120.50  Aligned_cols=117  Identities=24%  Similarity=0.335  Sum_probs=86.4

Q ss_pred             hHHHHHhc------cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccc
Q psy17793         73 PSILAGHY------LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST  146 (397)
Q Consensus        73 ~S~l~~~~------L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~  146 (397)
                      -|.|++.+      +.+++|++|||+|||||.+|.++|..+++.++|+|+|+++.+++.+.+.+++.  .||.++..|++
T Consensus       114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~  191 (293)
T PTZ00146        114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDAR  191 (293)
T ss_pred             ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCcc
Confidence            36666555      45789999999999999999999999987899999999988877776665543  57889999986


Q ss_pred             cccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q psy17793        147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLL  226 (397)
Q Consensus       147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lL  226 (397)
                      ....        .....++||+|++|..      .|            .       ..+.++.+           +.++|
T Consensus       192 ~p~~--------y~~~~~~vDvV~~Dva------~p------------d-------q~~il~~n-----------a~r~L  227 (293)
T PTZ00146        192 YPQK--------YRMLVPMVDVIFADVA------QP------------D-------QARIVALN-----------AQYFL  227 (293)
T ss_pred             Chhh--------hhcccCCCCEEEEeCC------Cc------------c-------hHHHHHHH-----------HHHhc
Confidence            4310        0112357999999874      00            1       01234446           78899


Q ss_pred             cCCcEEEEE
Q psy17793        227 KKDGILVYC  235 (397)
Q Consensus       227 kpgG~lvys  235 (397)
                      ||||.++.+
T Consensus       228 KpGG~~vI~  236 (293)
T PTZ00146        228 KNGGHFIIS  236 (293)
T ss_pred             cCCCEEEEE
Confidence            999999884

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.37  E-value=1.2e-11  Score=103.77  Aligned_cols=111  Identities=19%  Similarity=0.260  Sum_probs=88.3

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ...+.+.++++|||+|||+|..+..++...+ .++|+++|.++.+++.++++++.+++.++++...|+.....       
T Consensus        12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------   83 (124)
T TIGR02469        12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE-------   83 (124)
T ss_pred             HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh-------
Confidence            3455677788999999999999999998764 47999999999999999999999998889998888764321       


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                         ....+||.|+++.+                   ...       ..++++.           +.++|||||+++...
T Consensus        84 ---~~~~~~D~v~~~~~-------------------~~~-------~~~~l~~-----------~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        84 ---DSLPEPDRVFIGGS-------------------GGL-------LQEILEA-----------IWRRLRPGGRIVLNA  122 (124)
T ss_pred             ---hhcCCCCEEEECCc-------------------chh-------HHHHHHH-----------HHHHcCCCCEEEEEe
Confidence               12357999998542                   111       1367777           999999999998863

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.37  E-value=3.9e-12  Score=119.46  Aligned_cols=116  Identities=18%  Similarity=0.280  Sum_probs=92.1

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d  155 (397)
                      .....+.++++++|||+|||+|..+..++...++.++|+++|+++.+++.+++++++.+.++++++.+|+....      
T Consensus        36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------  109 (231)
T TIGR02752        36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP------  109 (231)
T ss_pred             HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC------
Confidence            34456678889999999999999999999887667899999999999999999999988888999999987652      


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                           +..++||.|+++-..                   .....   . .++|++           +.++|||||.++..
T Consensus       110 -----~~~~~fD~V~~~~~l-------------------~~~~~---~-~~~l~~-----------~~~~Lk~gG~l~~~  150 (231)
T TIGR02752       110 -----FDDNSFDYVTIGFGL-------------------RNVPD---Y-MQVLRE-----------MYRVVKPGGKVVCL  150 (231)
T ss_pred             -----CCCCCccEEEEeccc-------------------ccCCC---H-HHHHHH-----------HHHHcCcCeEEEEE
Confidence                 345689999974320                   00001   1 356777           89999999999876


Q ss_pred             e
Q psy17793        236 T  236 (397)
Q Consensus       236 T  236 (397)
                      +
T Consensus       151 ~  151 (231)
T TIGR02752       151 E  151 (231)
T ss_pred             E
Confidence            3

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14968 putative methyltransferase; Provisional

Probab=99.37  E-value=2e-11  Score=110.40  Aligned_cols=156  Identities=17%  Similarity=0.146  Sum_probs=106.4

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEEccccccccc
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS--IQTHVYDSTRINTS  151 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~--v~~~~~D~~~~~~~  151 (397)
                      +.++...+...++.+|||+|||+|..+..++..   ...|+++|+|+.+++.+++++..++..+  +.+...|..+.   
T Consensus        12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---   85 (188)
T PRK14968         12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP---   85 (188)
T ss_pred             HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc---
Confidence            455556666678889999999999999999885   4789999999999999999999998866  88888887653   


Q ss_pred             chhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcE
Q psy17793        152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI  231 (397)
Q Consensus       152 ~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~  231 (397)
                               +....||.|++|||+...+........+.. ...... .-......++++           +.++|||||.
T Consensus        86 ---------~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~i~~-----------~~~~Lk~gG~  143 (188)
T PRK14968         86 ---------FRGDKFDVILFNPPYLPTEEEEEWDDWLNY-ALSGGK-DGREVIDRFLDE-----------VGRYLKPGGR  143 (188)
T ss_pred             ---------ccccCceEEEECCCcCCCCchhhhhhhhhh-hhccCc-ChHHHHHHHHHH-----------HHHhcCCCeE
Confidence                     233479999999998654321111000000 000000 001223567888           9999999999


Q ss_pred             EEEEecCCCccccHHHHHHHHHHCCCcEEE
Q psy17793        232 LVYCTCSLSVEENEAVIAWILHRHPEVELV  261 (397)
Q Consensus       232 lvysTCS~~~eEnE~vV~~~L~~~~~~~l~  261 (397)
                      +++..+++..   .+-+..++++. +++..
T Consensus       144 ~~~~~~~~~~---~~~l~~~~~~~-g~~~~  169 (188)
T PRK14968        144 ILLLQSSLTG---EDEVLEYLEKL-GFEAE  169 (188)
T ss_pred             EEEEEcccCC---HHHHHHHHHHC-CCeee
Confidence            9888766532   23445566665 45544

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.36  E-value=6e-12  Score=126.82  Aligned_cols=124  Identities=11%  Similarity=0.106  Sum_probs=96.0

Q ss_pred             chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC---cEEEEEccccc
Q psy17793         71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS---SIQTHVYDSTR  147 (397)
Q Consensus        71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~---~v~~~~~D~~~  147 (397)
                      |..+.+....+....+.+|||+|||+|..++.++... +..+|+++|+|+.+++.+++|++.++..   ++++...|+..
T Consensus       214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~  292 (378)
T PRK15001        214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS  292 (378)
T ss_pred             ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence            6778877777776666799999999999999998874 5679999999999999999999988753   67888888754


Q ss_pred             ccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793        148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK  227 (397)
Q Consensus       148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk  227 (397)
                      .            ....+||.|++|||+.- |.      ..+     ..      .-.+++..           +.++||
T Consensus       293 ~------------~~~~~fDlIlsNPPfh~-~~------~~~-----~~------ia~~l~~~-----------a~~~Lk  331 (378)
T PRK15001        293 G------------VEPFRFNAVLCNPPFHQ-QH------ALT-----DN------VAWEMFHH-----------ARRCLK  331 (378)
T ss_pred             c------------CCCCCEEEEEECcCccc-Cc------cCC-----HH------HHHHHHHH-----------HHHhcc
Confidence            3            23357999999999532 10      011     11      12467888           999999


Q ss_pred             CCcEEEEEe
Q psy17793        228 KDGILVYCT  236 (397)
Q Consensus       228 pgG~lvysT  236 (397)
                      |||.|++..
T Consensus       332 pGG~L~iV~  340 (378)
T PRK15001        332 INGELYIVA  340 (378)
T ss_pred             cCCEEEEEE
Confidence            999998874

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.36  E-value=1.3e-11  Score=112.57  Aligned_cols=125  Identities=22%  Similarity=0.253  Sum_probs=95.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      +|.+|||+|||+|..+..+|.. .+.++|+|+|.|+.+++.++++++++++++++++++|+..+.            ..+
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~------------~~~  108 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ------------HEE  108 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc------------ccC
Confidence            4889999999999999988865 456799999999999999999999999988999999987652            236


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcccc
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN  244 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEn  244 (397)
                      +||.|+++.                       +..+    ..+++.           +.++|||||+++..    +....
T Consensus       109 ~fD~I~s~~-----------------------~~~~----~~~~~~-----------~~~~LkpgG~lvi~----~~~~~  146 (181)
T TIGR00138       109 QFDVITSRA-----------------------LASL----NVLLEL-----------TLNLLKVGGYFLAY----KGKKY  146 (181)
T ss_pred             CccEEEehh-----------------------hhCH----HHHHHH-----------HHHhcCCCCEEEEE----cCCCc
Confidence            899999742                       1111    234555           78899999999975    44555


Q ss_pred             HHHHHHHHHHCC--CcEEEecC
Q psy17793        245 EAVIAWILHRHP--EVELVQTL  264 (397)
Q Consensus       245 E~vV~~~L~~~~--~~~l~~~~  264 (397)
                      +..+..+.++.-  +++.++..
T Consensus       147 ~~~~~~~~e~~~~~~~~~~~~~  168 (181)
T TIGR00138       147 LDEIEEAKRKCQVLGVEPLEVP  168 (181)
T ss_pred             HHHHHHHHHhhhhcCceEeecc
Confidence            666666666643  45555543

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.36  E-value=8.2e-12  Score=120.23  Aligned_cols=118  Identities=19%  Similarity=0.260  Sum_probs=90.0

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH---hCCCcEEEEEcccccccccc
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKK---LQLSSIQTHVYDSTRINTSS  152 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~---~g~~~v~~~~~D~~~~~~~~  152 (397)
                      .+...+.+.++++|||+|||+|..+..++...+..++|+|+|+|+.+++.++++...   .+..++++.++|+..+.   
T Consensus        64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp---  140 (261)
T PLN02233         64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP---  140 (261)
T ss_pred             HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC---
Confidence            344566778899999999999999998888766667999999999999999877642   23457999999987763   


Q ss_pred             hhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE
Q psy17793        153 QIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL  232 (397)
Q Consensus       153 ~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l  232 (397)
                              +.+++||.|++.-     +                 +..+.+. .++|++           +.++|||||++
T Consensus       141 --------~~~~sfD~V~~~~-----~-----------------l~~~~d~-~~~l~e-----------i~rvLkpGG~l  178 (261)
T PLN02233        141 --------FDDCYFDAITMGY-----G-----------------LRNVVDR-LKAMQE-----------MYRVLKPGSRV  178 (261)
T ss_pred             --------CCCCCEeEEEEec-----c-----------------cccCCCH-HHHHHH-----------HHHHcCcCcEE
Confidence                    4567899998611     1                 1111111 557778           99999999999


Q ss_pred             EEEecC
Q psy17793        233 VYCTCS  238 (397)
Q Consensus       233 vysTCS  238 (397)
                      +.++.+
T Consensus       179 ~i~d~~  184 (261)
T PLN02233        179 SILDFN  184 (261)
T ss_pred             EEEECC
Confidence            998554

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.35  E-value=5.1e-12  Score=120.31  Aligned_cols=97  Identities=21%  Similarity=0.309  Sum_probs=74.9

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRI  148 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~  148 (397)
                      -.+...++...+++.||++||++|+|+|+.|..+|..+++.|+|+.+|..+++++.+++|++++|+. +|++...|....
T Consensus        25 YpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~  104 (247)
T PF08704_consen   25 YPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEE  104 (247)
T ss_dssp             -HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG
T ss_pred             eCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecc
Confidence            3344456667899999999999999999999999999999999999999999999999999999996 699999998643


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                      ...        ......||.|++|-|
T Consensus       105 g~~--------~~~~~~~DavfLDlp  122 (247)
T PF08704_consen  105 GFD--------EELESDFDAVFLDLP  122 (247)
T ss_dssp             --S--------TT-TTSEEEEEEESS
T ss_pred             ccc--------ccccCcccEEEEeCC
Confidence            100        012357999999998

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.35  E-value=7.6e-12  Score=124.87  Aligned_cols=129  Identities=19%  Similarity=0.138  Sum_probs=98.0

Q ss_pred             chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccc
Q psy17793         71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT  150 (397)
Q Consensus        71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~  150 (397)
                      |..|.+....+......+|||+|||+|..+..++... +..+|+++|+|+.+++.+++|++++++. .++...|....  
T Consensus       182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~--  257 (342)
T PRK09489        182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD--  257 (342)
T ss_pred             CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc--
Confidence            5677777776765556689999999999999998863 4568999999999999999999999875 46677776542  


Q ss_pred             cchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc
Q psy17793        151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG  230 (397)
Q Consensus       151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG  230 (397)
                                 ..++||.|++|||.- .|.             ....   . .-.++++.           +.++|||||
T Consensus       258 -----------~~~~fDlIvsNPPFH-~g~-------------~~~~---~-~~~~~i~~-----------a~~~LkpgG  297 (342)
T PRK09489        258 -----------IKGRFDMIISNPPFH-DGI-------------QTSL---D-AAQTLIRG-----------AVRHLNSGG  297 (342)
T ss_pred             -----------cCCCccEEEECCCcc-CCc-------------cccH---H-HHHHHHHH-----------HHHhcCcCC
Confidence                       236799999999931 000             0111   1 11667888           999999999


Q ss_pred             EEEEEecCCCccc
Q psy17793        231 ILVYCTCSLSVEE  243 (397)
Q Consensus       231 ~lvysTCS~~~eE  243 (397)
                      .+++.+.++.+.+
T Consensus       298 ~L~iVan~~l~y~  310 (342)
T PRK09489        298 ELRIVANAFLPYP  310 (342)
T ss_pred             EEEEEEeCCCChH
Confidence            9999988877654

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=1.3e-11  Score=119.43  Aligned_cols=125  Identities=18%  Similarity=0.134  Sum_probs=100.6

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRIN  149 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~  149 (397)
                      -|..|.++...|....+.+|||+|||-|-.++.+|... +..+|+-+|+|..+++.+++|++.+++++.+++..|.....
T Consensus       143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v  221 (300)
T COG2813         143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV  221 (300)
T ss_pred             cChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc
Confidence            47889999999998888899999999999999999985 47899999999999999999999999988766666665431


Q ss_pred             ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793        150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD  229 (397)
Q Consensus       150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg  229 (397)
                                  . ++||.|++|||-.                  ....-...+-.+|+..           |.+.|++|
T Consensus       222 ------------~-~kfd~IisNPPfh------------------~G~~v~~~~~~~~i~~-----------A~~~L~~g  259 (300)
T COG2813         222 ------------E-GKFDLIISNPPFH------------------AGKAVVHSLAQEIIAA-----------AARHLKPG  259 (300)
T ss_pred             ------------c-ccccEEEeCCCcc------------------CCcchhHHHHHHHHHH-----------HHHhhccC
Confidence                        2 3899999999921                  1111111222678888           99999999


Q ss_pred             cEEEEEec
Q psy17793        230 GILVYCTC  237 (397)
Q Consensus       230 G~lvysTC  237 (397)
                      |.|....-
T Consensus       260 GeL~iVan  267 (300)
T COG2813         260 GELWIVAN  267 (300)
T ss_pred             CEEEEEEc
Confidence            99988744

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.33  E-value=1.1e-11  Score=122.44  Aligned_cols=86  Identities=23%  Similarity=0.312  Sum_probs=71.9

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      .++..++.+|||+|||+|..+..+|..   ..+|+|+|+++.+++.+++|++.+|+++++++++|+..+..         
T Consensus       168 ~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~---------  235 (315)
T PRK03522        168 WVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFAT---------  235 (315)
T ss_pred             HHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHH---------
Confidence            344446789999999999999999983   46899999999999999999999999889999999976521         


Q ss_pred             hhcccCccEEEEcCCCCCC
Q psy17793        160 KLQKESFDRILLDAPCSGF  178 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~  178 (397)
                       ...+.||.|++|||++|.
T Consensus       236 -~~~~~~D~Vv~dPPr~G~  253 (315)
T PRK03522        236 -AQGEVPDLVLVNPPRRGI  253 (315)
T ss_pred             -hcCCCCeEEEECCCCCCc
Confidence             123469999999997763

>KOG1540|consensus

Probab=99.33  E-value=7.5e-12  Score=117.46  Aligned_cols=138  Identities=20%  Similarity=0.313  Sum_probs=106.8

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCC-----cEEEEEeCCHHHHHHHHHHHHHhCCC---cEEEEEcccccc
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT-----GTLIALDKSKPRVTKLEETIKKLQLS---SIQTHVYDSTRI  148 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~-----~~V~avD~s~~rl~~l~~n~~~~g~~---~v~~~~~D~~~~  148 (397)
                      .+..|.|.+|.++||+|+|+|-.|..+.......     ++|+.+|+|+.++...+++.++.++.   .++++++|+.++
T Consensus        92 ~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L  171 (296)
T KOG1540|consen   92 FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL  171 (296)
T ss_pred             hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence            4556788899999999999999999999887653     89999999999999999999887764   388999999887


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                      +           |...+||...+     +.|                 ++..... .+.|++           |.+.|||
T Consensus       172 p-----------Fdd~s~D~yTi-----afG-----------------IRN~th~-~k~l~E-----------AYRVLKp  206 (296)
T KOG1540|consen  172 P-----------FDDDSFDAYTI-----AFG-----------------IRNVTHI-QKALRE-----------AYRVLKP  206 (296)
T ss_pred             C-----------CCCCcceeEEE-----ecc-----------------eecCCCH-HHHHHH-----------HHHhcCC
Confidence            3           77889999876     222                 2222223 456777           9999999


Q ss_pred             CcEEEEEecCCCccccHHHHHHHHHHCCCcEEEec
Q psy17793        229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       229 gG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                      ||++.   |--.+.+|.+.+.++.+.+ .+..+|.
T Consensus       207 GGrf~---cLeFskv~~~~l~~fy~~y-sf~Vlpv  237 (296)
T KOG1540|consen  207 GGRFS---CLEFSKVENEPLKWFYDQY-SFDVLPV  237 (296)
T ss_pred             CcEEE---EEEccccccHHHHHHHHhh-hhhhhch
Confidence            99987   4444455544888888877 4666554

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.32  E-value=7.4e-12  Score=116.64  Aligned_cols=101  Identities=19%  Similarity=0.340  Sum_probs=79.0

Q ss_pred             CCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc
Q psy17793         64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY  143 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~  143 (397)
                      .|..+.|-..-......|++++|++|||+|||+|..|..+|.+.+..++|+++|+++...+.+++++++++..||.+..+
T Consensus        51 ~~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g  130 (209)
T PF01135_consen   51 CGQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVG  130 (209)
T ss_dssp             TTEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES
T ss_pred             ceeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEc
Confidence            34444444444556677889999999999999999999999999888899999999999999999999999999999999


Q ss_pred             ccccccccchhhHHHhhhcccCccEEEEcCCC
Q psy17793        144 DSTRINTSSQIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                      |...-..           ....||+|++.+.|
T Consensus       131 dg~~g~~-----------~~apfD~I~v~~a~  151 (209)
T PF01135_consen  131 DGSEGWP-----------EEAPFDRIIVTAAV  151 (209)
T ss_dssp             -GGGTTG-----------GG-SEEEEEESSBB
T ss_pred             chhhccc-----------cCCCcCEEEEeecc
Confidence            9875431           23579999997653

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.32  E-value=2.6e-11  Score=111.15  Aligned_cols=122  Identities=20%  Similarity=0.235  Sum_probs=92.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      +++.+|||+|||+|..+..+|... +.++|+++|+++.+++.+++++++++++++++..+|+....           . .
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~-----------~-~  110 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG-----------Q-E  110 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC-----------C-C
Confidence            348899999999999999888764 56899999999999999999999999988999999987652           2 4


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccc
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE  243 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eE  243 (397)
                      ++||+|+++.=                .++           ..+++.           +.++|||||++++....    .
T Consensus       111 ~~fDlV~~~~~----------------~~~-----------~~~l~~-----------~~~~LkpGG~lv~~~~~----~  148 (187)
T PRK00107        111 EKFDVVTSRAV----------------ASL-----------SDLVEL-----------CLPLLKPGGRFLALKGR----D  148 (187)
T ss_pred             CCccEEEEccc----------------cCH-----------HHHHHH-----------HHHhcCCCeEEEEEeCC----C
Confidence            68999998420                011           345666           88999999999987544    2


Q ss_pred             cHHHHHHHHHHCCCcEEE
Q psy17793        244 NEAVIAWILHRHPEVELV  261 (397)
Q Consensus       244 nE~vV~~~L~~~~~~~l~  261 (397)
                      .+..+..+.+.. ++.+.
T Consensus       149 ~~~~l~~~~~~~-~~~~~  165 (187)
T PRK00107        149 PEEEIAELPKAL-GGKVE  165 (187)
T ss_pred             hHHHHHHHHHhc-CceEe
Confidence            333444444444 45543

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.30  E-value=2.1e-11  Score=125.92  Aligned_cols=89  Identities=25%  Similarity=0.387  Sum_probs=74.1

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      ..+.+.++++|||+|||+|..+..+|..   ..+|+|+|+|+.+++.+++|++.+|++++++.++|+......       
T Consensus       291 ~~l~~~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~-------  360 (443)
T PRK13168        291 EWLDPQPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD-------  360 (443)
T ss_pred             HHhcCCCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh-------
Confidence            3456678899999999999999999885   368999999999999999999999999999999998754211       


Q ss_pred             hhhcccCccEEEEcCCCCC
Q psy17793        159 MKLQKESFDRILLDAPCSG  177 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg  177 (397)
                      .++..++||+|++|||++|
T Consensus       361 ~~~~~~~fD~Vi~dPPr~g  379 (443)
T PRK13168        361 QPWALGGFDKVLLDPPRAG  379 (443)
T ss_pred             hhhhcCCCCEEEECcCCcC
Confidence            1123457999999999776

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=3.1e-11  Score=117.24  Aligned_cols=138  Identities=20%  Similarity=0.241  Sum_probs=99.7

Q ss_pred             hhHHHHHhccC--CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccc
Q psy17793         72 LPSILAGHYLD--VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRI  148 (397)
Q Consensus        72 ~~S~l~~~~L~--~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~  148 (397)
                      ++..++..+|+  .++|.+|||+|||+|..++.++.+  +..+|+|+|+|+.+++.+++|+++++++. +.....+....
T Consensus       147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~  224 (300)
T COG2264         147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV  224 (300)
T ss_pred             hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence            45566666665  468999999999999999766664  67889999999999999999999999875 22222222221


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                                  ...++||+|++|-                          +++.-.++...           +.++|||
T Consensus       225 ------------~~~~~~DvIVANI--------------------------LA~vl~~La~~-----------~~~~lkp  255 (300)
T COG2264         225 ------------PENGPFDVIVANI--------------------------LAEVLVELAPD-----------IKRLLKP  255 (300)
T ss_pred             ------------cccCcccEEEehh--------------------------hHHHHHHHHHH-----------HHHHcCC
Confidence                        1336899999832                          22222445555           8899999


Q ss_pred             CcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecC
Q psy17793        229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL  264 (397)
Q Consensus       229 gG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~  264 (397)
                      ||+++.|  -+..+. ++.|...+++. ++++++..
T Consensus       256 gg~lIlS--GIl~~q-~~~V~~a~~~~-gf~v~~~~  287 (300)
T COG2264         256 GGRLILS--GILEDQ-AESVAEAYEQA-GFEVVEVL  287 (300)
T ss_pred             CceEEEE--eehHhH-HHHHHHHHHhC-CCeEeEEE
Confidence            9999998  466555 56666667665 68887764

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.29  E-value=4.5e-11  Score=110.74  Aligned_cols=117  Identities=21%  Similarity=0.218  Sum_probs=87.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccc-ccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDS-TRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~-~~~~~~~~~d~~~~~~~~  163 (397)
                      ++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.++++++..++.+++++++|+ ..+.         ..+..
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~---------~~~~~  109 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL---------DMFPD  109 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH---------HHcCc
Confidence            57799999999999999999875 4568999999999999999999999988899999998 4431         01345


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                      ++||.|+++.|.      |.....       .....  ..+..+|++           +.++|||||.++++|+
T Consensus       110 ~~~D~V~~~~~~------p~~~~~-------~~~~~--~~~~~~l~~-----------i~~~LkpgG~l~i~~~  157 (202)
T PRK00121        110 GSLDRIYLNFPD------PWPKKR-------HHKRR--LVQPEFLAL-----------YARKLKPGGEIHFATD  157 (202)
T ss_pred             cccceEEEECCC------CCCCcc-------ccccc--cCCHHHHHH-----------HHHHcCCCCEEEEEcC
Confidence            689999996541      110000       00000  023667788           9999999999999854

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.29  E-value=3.6e-11  Score=125.93  Aligned_cols=139  Identities=17%  Similarity=0.238  Sum_probs=99.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      ++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.+++|++++++. ++.++.+|+...            ...
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~------------~~~  204 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN------------IEK  204 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh------------CcC
Confidence            34689999999999999888865 4579999999999999999999999985 588999987543            223


Q ss_pred             cCccEEEEcCCCCCCCCCccc----ccccCccch---HHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        164 ESFDRILLDAPCSGFGQRPMF----YNANSFLNL---DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~----~~~~s~~~~---~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      ++||+|++|||+......+..    ........+   ...+..+    ++++..           +.++|+|||.+++. 
T Consensus       205 ~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~----~~il~~-----------a~~~L~~gG~l~lE-  268 (506)
T PRK01544        205 QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAY----FIIAEN-----------AKQFLKPNGKIILE-  268 (506)
T ss_pred             CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHH----HHHHHH-----------HHHhccCCCEEEEE-
Confidence            579999999999876532211    111110000   1222222    778888           99999999999875 


Q ss_pred             cCCCccccHHHHHHHHHHC
Q psy17793        237 CSLSVEENEAVIAWILHRH  255 (397)
Q Consensus       237 CS~~~eEnE~vV~~~L~~~  255 (397)
                      +.   ....+.|..++++.
T Consensus       269 ig---~~q~~~v~~~~~~~  284 (506)
T PRK01544        269 IG---FKQEEAVTQIFLDH  284 (506)
T ss_pred             EC---CchHHHHHHHHHhc
Confidence            22   23444566666665

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.29  E-value=2.1e-11  Score=125.39  Aligned_cols=90  Identities=16%  Similarity=0.171  Sum_probs=73.9

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ...+.+.++++|||+|||+|..++.+|..   ..+|+|+|+++.+++.+++|++.+|++|++++.+|+......      
T Consensus       285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~------  355 (431)
T TIGR00479       285 LEALELQGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPK------  355 (431)
T ss_pred             HHHhccCCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHH------
Confidence            34456678899999999999999999885   358999999999999999999999999999999998764211      


Q ss_pred             HhhhcccCccEEEEcCCCCC
Q psy17793        158 RMKLQKESFDRILLDAPCSG  177 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg  177 (397)
                       ..+...+||+|++|||.+|
T Consensus       356 -~~~~~~~~D~vi~dPPr~G  374 (431)
T TIGR00479       356 -QPWAGQIPDVLLLDPPRKG  374 (431)
T ss_pred             -HHhcCCCCCEEEECcCCCC
Confidence             1122357999999999765

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.29  E-value=2.7e-11  Score=116.89  Aligned_cols=112  Identities=18%  Similarity=0.289  Sum_probs=89.0

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      ...+.+|++|||+|||+|..+..++..++..++|+++|+++.+++.++++.+.+++.++++..+|+..+.          
T Consensus        72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~----------  141 (272)
T PRK11873         72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP----------  141 (272)
T ss_pred             hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC----------
Confidence            3456789999999999999888888877667899999999999999999999999989999999886642          


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                       +..+.||+|+++.-.           .+.    ..       . .+++++           +.++|||||+|+++.
T Consensus       142 -~~~~~fD~Vi~~~v~-----------~~~----~d-------~-~~~l~~-----------~~r~LkpGG~l~i~~  183 (272)
T PRK11873        142 -VADNSVDVIISNCVI-----------NLS----PD-------K-ERVFKE-----------AFRVLKPGGRFAISD  183 (272)
T ss_pred             -CCCCceeEEEEcCcc-----------cCC----CC-------H-HHHHHH-----------HHHHcCCCcEEEEEE
Confidence             345689999975310           000    00       0 456777           999999999999874

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=2.3e-11  Score=112.16  Aligned_cols=98  Identities=16%  Similarity=0.324  Sum_probs=84.1

Q ss_pred             CCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEE
Q psy17793         63 DSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV  142 (397)
Q Consensus        63 ~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~  142 (397)
                      ..|.++.|-.--.....+|++++|++||++|||+|..|..+|++.   ++|+++|+++.-.+.+++|++.+|..||.+.+
T Consensus        50 ~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~  126 (209)
T COG2518          50 GCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRH  126 (209)
T ss_pred             CCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEE
Confidence            466666676666677789999999999999999999999999985   49999999999999999999999999999999


Q ss_pred             cccccccccchhhHHHhhhcccCccEEEEcCC
Q psy17793        143 YDSTRINTSSQIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       143 ~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                      +|...-..           ....||+|++.+-
T Consensus       127 gDG~~G~~-----------~~aPyD~I~Vtaa  147 (209)
T COG2518         127 GDGSKGWP-----------EEAPYDRIIVTAA  147 (209)
T ss_pred             CCcccCCC-----------CCCCcCEEEEeec
Confidence            99976531           2368999998553

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.27  E-value=1.7e-11  Score=120.60  Aligned_cols=127  Identities=20%  Similarity=0.243  Sum_probs=99.1

Q ss_pred             hhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc-ccccccc
Q psy17793         72 LPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY-DSTRINT  150 (397)
Q Consensus        72 ~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~-D~~~~~~  150 (397)
                      .-|...+.+..+++|+.|||-.||||++...+.- +  +.+++|+|++..+++-++.|++.+|++...+... |++++. 
T Consensus       184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp-  259 (347)
T COG1041         184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGL-M--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP-  259 (347)
T ss_pred             HHHHHHHHHhccccCCEeecCcCCccHHHHhhhh-c--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC-
Confidence            3355667777899999999999999999976544 3  5799999999999999999999999988766666 998873 


Q ss_pred             cchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc
Q psy17793        151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG  230 (397)
Q Consensus       151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG  230 (397)
                                +...+||.|++|||+--+-.              .....+.++-.++|+.           +.+.||+||
T Consensus       260 ----------l~~~~vdaIatDPPYGrst~--------------~~~~~l~~Ly~~~le~-----------~~evLk~gG  304 (347)
T COG1041         260 ----------LRDNSVDAIATDPPYGRSTK--------------IKGEGLDELYEEALES-----------ASEVLKPGG  304 (347)
T ss_pred             ----------CCCCccceEEecCCCCcccc--------------cccccHHHHHHHHHHH-----------HHHHhhcCc
Confidence                      45557999999999622110              1111234445778888           999999999


Q ss_pred             EEEEEec
Q psy17793        231 ILVYCTC  237 (397)
Q Consensus       231 ~lvysTC  237 (397)
                      ++|+.+-
T Consensus       305 ~~vf~~p  311 (347)
T COG1041         305 RIVFAAP  311 (347)
T ss_pred             EEEEecC
Confidence            9999843

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.27  E-value=4.1e-11  Score=110.21  Aligned_cols=141  Identities=18%  Similarity=0.240  Sum_probs=99.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      ...+|||+|||+|..+..+|... +...|+|+|+++.+++.+++++++.++.|++++++|+..+...        .+..+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~--------~~~~~   86 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDK--------FFPDG   86 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHh--------hCCCC
Confidence            45699999999999999999874 5679999999999999999999999999999999999765311        12345


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcccc
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN  244 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEn  244 (397)
                      .||.|+++.|      .|.......    ...+     .+..+++.           +.++|||||.|.++|-.  ..-.
T Consensus        87 ~~d~v~~~~p------dpw~k~~h~----~~r~-----~~~~~l~~-----------~~r~LkpgG~l~~~td~--~~~~  138 (194)
T TIGR00091        87 SLSKVFLNFP------DPWPKKRHN----KRRI-----TQPHFLKE-----------YANVLKKGGVIHFKTDN--EPLF  138 (194)
T ss_pred             ceeEEEEECC------CcCCCCCcc----cccc-----CCHHHHHH-----------HHHHhCCCCEEEEEeCC--HHHH
Confidence            8999999876      222111110    0111     12567777           89999999999987522  1112


Q ss_pred             HHHHHHHHHHCCCcEEEec
Q psy17793        245 EAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       245 E~vV~~~L~~~~~~~l~~~  263 (397)
                      + .+...+..+++++....
T Consensus       139 ~-~~~~~~~~~~~f~~~~~  156 (194)
T TIGR00091       139 E-DMLKVLSENDLFENTSK  156 (194)
T ss_pred             H-HHHHHHHhCCCeEeccc
Confidence            2 23344555666666543

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PLN02244 tocopherol O-methyltransferase

Probab=99.26  E-value=3.4e-11  Score=120.23  Aligned_cols=108  Identities=13%  Similarity=0.156  Sum_probs=86.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      +++++|||+|||+|+.+..++...  +.+|+|+|+|+.+++.+++++++.|+. ++++..+|+....           +.
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-----------~~  183 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-----------FE  183 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-----------CC
Confidence            678899999999999999999864  469999999999999999999998874 6999999997652           45


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      .++||+|++.-                      .+.++.+. .+++++           +.++|||||+|+.+++.
T Consensus       184 ~~~FD~V~s~~----------------------~~~h~~d~-~~~l~e-----------~~rvLkpGG~lvi~~~~  225 (340)
T PLN02244        184 DGQFDLVWSME----------------------SGEHMPDK-RKFVQE-----------LARVAAPGGRIIIVTWC  225 (340)
T ss_pred             CCCccEEEECC----------------------chhccCCH-HHHHHH-----------HHHHcCCCcEEEEEEec
Confidence            67899999721                      11111111 467777           89999999999998753

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.26  E-value=1e-10  Score=108.83  Aligned_cols=96  Identities=22%  Similarity=0.303  Sum_probs=76.8

Q ss_pred             CcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcc
Q psy17793         65 SMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD  144 (397)
Q Consensus        65 g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D  144 (397)
                      |..+.+......+...+.++++++|||+|||+|..+..++.+.   ++|+++|+++.+++.++++++++++.++++..+|
T Consensus        58 ~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d  134 (212)
T PRK00312         58 GQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD  134 (212)
T ss_pred             CCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC
Confidence            3333444444455667888999999999999999999888763   4899999999999999999999999999999999


Q ss_pred             cccccccchhhHHHhhhcccCccEEEEcCC
Q psy17793        145 STRINTSSQIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       145 ~~~~~~~~~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                      +....           ...+.||+|+++++
T Consensus       135 ~~~~~-----------~~~~~fD~I~~~~~  153 (212)
T PRK00312        135 GWKGW-----------PAYAPFDRILVTAA  153 (212)
T ss_pred             cccCC-----------CcCCCcCEEEEccC
Confidence            85432           12367999999875

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.26  E-value=1.1e-10  Score=106.73  Aligned_cols=131  Identities=21%  Similarity=0.231  Sum_probs=85.9

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhh
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      -.+++|++|||+|||||+.+.+++......++|+++|+|+.+           ...++++++.|+......   +.-...
T Consensus        28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~---~~l~~~   93 (188)
T TIGR00438        28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVL---NKIRER   93 (188)
T ss_pred             cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHH---HHHHHH
Confidence            345789999999999999999999887667799999999864           234678888887653100   000011


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS  240 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~  240 (397)
                      +..++||+|++|+++...|.       |+    ....... ..+.++|..           +.++|+|||+++...  +.
T Consensus        94 ~~~~~~D~V~~~~~~~~~g~-------~~----~~~~~~~-~~~~~~l~~-----------~~~~LkpgG~lvi~~--~~  148 (188)
T TIGR00438        94 VGDDKVDVVMSDAAPNISGY-------WD----IDHLRSI-DLVELALDI-----------AKEVLKPKGNFVVKV--FQ  148 (188)
T ss_pred             hCCCCccEEEcCCCCCCCCC-------cc----ccHHHHH-HHHHHHHHH-----------HHHHccCCCEEEEEE--cc
Confidence            33457999999975332221       22    1111111 235778888           999999999999863  33


Q ss_pred             ccccHHHHHH
Q psy17793        241 VEENEAVIAW  250 (397)
Q Consensus       241 ~eEnE~vV~~  250 (397)
                      .++-++++..
T Consensus       149 ~~~~~~~l~~  158 (188)
T TIGR00438       149 GEEIDEYLNE  158 (188)
T ss_pred             CccHHHHHHH
Confidence            3443445543

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=3.7e-11  Score=123.12  Aligned_cols=91  Identities=18%  Similarity=0.230  Sum_probs=77.4

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      +...++..++++|||+.||.|++|+++|.   ...+|+|+|+++.+++.+++|++.+|++|+.+..+|+..+...     
T Consensus       285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~---~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~-----  356 (432)
T COG2265         285 ALEWLELAGGERVLDLYCGVGTFGLPLAK---RVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA-----  356 (432)
T ss_pred             HHHHHhhcCCCEEEEeccCCChhhhhhcc---cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh-----
Confidence            45566778889999999999999999996   4579999999999999999999999999999999999877422     


Q ss_pred             HHhhhcccCccEEEEcCCCCCC
Q psy17793        157 ERMKLQKESFDRILLDAPCSGF  178 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg~  178 (397)
                         +.....+|.|++|||-+|.
T Consensus       357 ---~~~~~~~d~VvvDPPR~G~  375 (432)
T COG2265         357 ---WWEGYKPDVVVVDPPRAGA  375 (432)
T ss_pred             ---ccccCCCCEEEECCCCCCC
Confidence               1123579999999997664

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.24  E-value=6.2e-11  Score=115.75  Aligned_cols=135  Identities=24%  Similarity=0.288  Sum_probs=93.4

Q ss_pred             hhHHHHHhccC--CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccc
Q psy17793         72 LPSILAGHYLD--VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRIN  149 (397)
Q Consensus        72 ~~S~l~~~~L~--~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~  149 (397)
                      ++..++..+|.  ..+|++|||+|||+|..++..+.+  +..+|+|+|+|+.+++.+++|++.+|+.. ++.......  
T Consensus       146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~--  220 (295)
T PF06325_consen  146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSED--  220 (295)
T ss_dssp             HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSC--
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecc--
Confidence            44555555554  568899999999999999766554  56799999999999999999999999976 332222111  


Q ss_pred             ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793        150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD  229 (397)
Q Consensus       150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg  229 (397)
                                 ...++||+|++|==                   ...+       ..++..           ..++|+||
T Consensus       221 -----------~~~~~~dlvvANI~-------------------~~vL-------~~l~~~-----------~~~~l~~~  252 (295)
T PF06325_consen  221 -----------LVEGKFDLVVANIL-------------------ADVL-------LELAPD-----------IASLLKPG  252 (295)
T ss_dssp             -----------TCCS-EEEEEEES--------------------HHHH-------HHHHHH-----------CHHHEEEE
T ss_pred             -----------cccccCCEEEECCC-------------------HHHH-------HHHHHH-----------HHHhhCCC
Confidence                       13378999998431                   2333       334444           78899999


Q ss_pred             cEEEEEecCCCccccHHHHHHHHHHCCCcEEEecC
Q psy17793        230 GILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL  264 (397)
Q Consensus       230 G~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~  264 (397)
                      |.++.|  -+..++.+++++.+ ++  +++++...
T Consensus       253 G~lIlS--GIl~~~~~~v~~a~-~~--g~~~~~~~  282 (295)
T PF06325_consen  253 GYLILS--GILEEQEDEVIEAY-KQ--GFELVEER  282 (295)
T ss_dssp             EEEEEE--EEEGGGHHHHHHHH-HT--TEEEEEEE
T ss_pred             CEEEEc--cccHHHHHHHHHHH-HC--CCEEEEEE
Confidence            999998  66766666666554 54  68876543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>KOG2904|consensus

Probab=99.24  E-value=9.1e-11  Score=111.13  Aligned_cols=151  Identities=17%  Similarity=0.168  Sum_probs=105.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .+..+||+|||+|..++.++.-++ .++|+|+|+|+.++..+.+|++++++.+ +.+++.+...-...    +  .+...
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~----~--~~l~~  220 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASD----E--HPLLE  220 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccccc----c--ccccc
Confidence            355899999999999999999875 7899999999999999999999999876 77775543221000    0  01245


Q ss_pred             cCccEEEEcCCCCCCC----CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        164 ESFDRILLDAPCSGFG----QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G----~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                      ++.|++++|||+-..-    ..|++......+.+......+..+ ..++.-           |.++|++||.+++.+-. 
T Consensus       221 ~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~-~~~~~~-----------a~R~Lq~gg~~~le~~~-  287 (328)
T KOG2904|consen  221 GKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNL-VHYWLL-----------ATRMLQPGGFEQLELVE-  287 (328)
T ss_pred             CceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHH-HHHHHh-----------hHhhcccCCeEEEEecc-
Confidence            7899999999997764    355554444422332333333322 455555           99999999999998542 


Q ss_pred             CccccHHHHHHHHHHCC
Q psy17793        240 SVEENEAVIAWILHRHP  256 (397)
Q Consensus       240 ~~eEnE~vV~~~L~~~~  256 (397)
                       ..+....|..++...+
T Consensus       288 -~~~~~~lv~~~m~s~~  303 (328)
T KOG2904|consen  288 -RKEHSYLVRIWMISLK  303 (328)
T ss_pred             -cccCcHHHHHHHHhch
Confidence             2455567777766543

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.24  E-value=7.2e-11  Score=109.24  Aligned_cols=80  Identities=11%  Similarity=0.113  Sum_probs=67.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..++.+++.  ...+|+++|+++..++.+++|++.+|+++++++++|+.....          ...
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~----------~~~  119 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA----------QPG  119 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh----------hcC
Confidence            56789999999999999865553  357999999999999999999999999899999999876421          123


Q ss_pred             cCccEEEEcCCC
Q psy17793        164 ESFDRILLDAPC  175 (397)
Q Consensus       164 ~~fD~Il~DpPC  175 (397)
                      +.||+|++|||+
T Consensus       120 ~~fDlV~~DPPy  131 (199)
T PRK10909        120 TPHNVVFVDPPF  131 (199)
T ss_pred             CCceEEEECCCC
Confidence            469999999994

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.24  E-value=9.8e-11  Score=111.04  Aligned_cols=125  Identities=19%  Similarity=0.203  Sum_probs=96.2

Q ss_pred             hhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccc
Q psy17793         72 LPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINT  150 (397)
Q Consensus        72 ~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~  150 (397)
                      ....++..++...+..+|||+|+|+|.-++.+|..+.+.++|+++|+++++++.+++|++++|+. +|+++.+|+.+...
T Consensus        55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~  134 (234)
T PLN02781         55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALD  134 (234)
T ss_pred             HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHH
Confidence            34456666666777889999999999999999998877899999999999999999999999986 49999999977531


Q ss_pred             cchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc
Q psy17793        151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG  230 (397)
Q Consensus       151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG  230 (397)
                      ..     ......++||.|++|++                   +...       ..++..           +.++|||||
T Consensus       135 ~l-----~~~~~~~~fD~VfiDa~-------------------k~~y-------~~~~~~-----------~~~ll~~GG  172 (234)
T PLN02781        135 QL-----LNNDPKPEFDFAFVDAD-------------------KPNY-------VHFHEQ-----------LLKLVKVGG  172 (234)
T ss_pred             HH-----HhCCCCCCCCEEEECCC-------------------HHHH-------HHHHHH-----------HHHhcCCCe
Confidence            10     00011358999999986                   2222       234555           888999999


Q ss_pred             EEEEEecC
Q psy17793        231 ILVYCTCS  238 (397)
Q Consensus       231 ~lvysTCS  238 (397)
                      .|+...+-
T Consensus       173 ~ii~dn~l  180 (234)
T PLN02781        173 IIAFDNTL  180 (234)
T ss_pred             EEEEEcCC
Confidence            99876543

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=2.3e-10  Score=103.42  Aligned_cols=139  Identities=16%  Similarity=0.230  Sum_probs=99.2

Q ss_pred             CCCcEEEechhHHHHH--hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q psy17793         63 DSSMGILQNLPSILAG--HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT  140 (397)
Q Consensus        63 ~~g~~~~Qd~~S~l~~--~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~  140 (397)
                      ++.|-..-+.++.++.  +....-.|..|+|+|||+|..++..+.+  +..+|+|+|+|+++++.+++|++++ ..+|++
T Consensus        21 LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f   97 (198)
T COG2263          21 LEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEEL-LGDVEF   97 (198)
T ss_pred             ceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhh-CCceEE
Confidence            3333334444554433  3334557889999999999999755543  6789999999999999999999994 457999


Q ss_pred             EEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccc
Q psy17793        141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDW  220 (397)
Q Consensus       141 ~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~  220 (397)
                      .++|+..+              ...||.+++|||--.-         .      +. .+     +.+|..          
T Consensus        98 ~~~dv~~~--------------~~~~dtvimNPPFG~~---------~------rh-aD-----r~Fl~~----------  132 (198)
T COG2263          98 VVADVSDF--------------RGKFDTVIMNPPFGSQ---------R------RH-AD-----RPFLLK----------  132 (198)
T ss_pred             EEcchhhc--------------CCccceEEECCCCccc---------c------cc-CC-----HHHHHH----------
Confidence            99999875              3679999999992110         0      00 11     344444          


Q ss_pred             cccccccCCcEEEEEecCCCccccHHHHHHHHHHCCC
Q psy17793        221 QGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE  257 (397)
Q Consensus       221 ~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~  257 (397)
                       |++.    +.+|||   +|..-+++-+.+..+.+++
T Consensus       133 -Ale~----s~vVYs---iH~a~~~~f~~~~~~~~G~  161 (198)
T COG2263         133 -ALEI----SDVVYS---IHKAGSRDFVEKFAADLGG  161 (198)
T ss_pred             -HHHh----hheEEE---eeccccHHHHHHHHHhcCC
Confidence             3332    378895   9999999999999988864

>PLN02476 O-methyltransferase

Probab=99.24  E-value=6.3e-11  Score=114.60  Aligned_cols=129  Identities=12%  Similarity=0.184  Sum_probs=100.0

Q ss_pred             EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEccccc
Q psy17793         69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTR  147 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~  147 (397)
                      +......+...++......+|||+|++.|..|+++|..+++.++|+++|.++++.+.+++|++++|+. +|+++.+|+..
T Consensus       102 v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e  181 (278)
T PLN02476        102 VSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE  181 (278)
T ss_pred             cCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            34445566666677777889999999999999999998877889999999999999999999999997 59999999987


Q ss_pred             ccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793        148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK  227 (397)
Q Consensus       148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk  227 (397)
                      .+...     ......++||.|++|++                   +...       ...++.           +.++|+
T Consensus       182 ~L~~l-----~~~~~~~~FD~VFIDa~-------------------K~~Y-------~~y~e~-----------~l~lL~  219 (278)
T PLN02476        182 SLKSM-----IQNGEGSSYDFAFVDAD-------------------KRMY-------QDYFEL-----------LLQLVR  219 (278)
T ss_pred             HHHHH-----HhcccCCCCCEEEECCC-------------------HHHH-------HHHHHH-----------HHHhcC
Confidence            64210     00011357999999997                   3333       334455           888999


Q ss_pred             CCcEEEEEecCC
Q psy17793        228 KDGILVYCTCSL  239 (397)
Q Consensus       228 pgG~lvysTCS~  239 (397)
                      +||.|+.-..-+
T Consensus       220 ~GGvIV~DNvL~  231 (278)
T PLN02476        220 VGGVIVMDNVLW  231 (278)
T ss_pred             CCcEEEEecCcc
Confidence            999998865533

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.23  E-value=3e-10  Score=112.43  Aligned_cols=106  Identities=19%  Similarity=0.153  Sum_probs=84.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      +.+|.+|||+|||+|..+..+|.   .+.+|+|+|.++++++.++++++..+. .+|+++++|+..+.           +
T Consensus       129 ~~~g~~ILDIGCG~G~~s~~La~---~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-----------~  194 (322)
T PLN02396        129 PFEGLKFIDIGCGGGLLSEPLAR---MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-----------D  194 (322)
T ss_pred             CCCCCEEEEeeCCCCHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-----------h
Confidence            45678999999999999998886   356899999999999999988776554 46899999886652           3


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      ..++||+|++                      ...+.++.+. ..+|++           ..++|||||.++++|
T Consensus       195 ~~~~FD~Vi~----------------------~~vLeHv~d~-~~~L~~-----------l~r~LkPGG~liist  235 (322)
T PLN02396        195 EGRKFDAVLS----------------------LEVIEHVANP-AEFCKS-----------LSALTIPNGATVLST  235 (322)
T ss_pred             ccCCCCEEEE----------------------hhHHHhcCCH-HHHHHH-----------HHHHcCCCcEEEEEE
Confidence            4568999997                      3445544444 567888           889999999999985

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.22  E-value=9.8e-11  Score=108.05  Aligned_cols=115  Identities=19%  Similarity=0.127  Sum_probs=86.6

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ  153 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~  153 (397)
                      +..+...+...++.+|||+|||+|..+.++|+.   +.+|+|+|+|+.+++.++++++..++.++++...|+....    
T Consensus        19 ~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~----   91 (197)
T PRK11207         19 HSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT----   91 (197)
T ss_pred             hHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC----
Confidence            344455666677889999999999999999984   4689999999999999999999999888898888886542    


Q ss_pred             hhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793        154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV  233 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv  233 (397)
                             + .+.||.|++.-.          .....    ..       ....++++           +.++|||||.++
T Consensus        92 -------~-~~~fD~I~~~~~----------~~~~~----~~-------~~~~~l~~-----------i~~~LkpgG~~~  131 (197)
T PRK11207         92 -------F-DGEYDFILSTVV----------LMFLE----AK-------TIPGLIAN-----------MQRCTKPGGYNL  131 (197)
T ss_pred             -------c-CCCcCEEEEecc----------hhhCC----HH-------HHHHHHHH-----------HHHHcCCCcEEE
Confidence                   2 357999997221          00001    11       12567777           899999999976


Q ss_pred             EE
Q psy17793        234 YC  235 (397)
Q Consensus       234 ys  235 (397)
                      +.
T Consensus       132 ~~  133 (197)
T PRK11207        132 IV  133 (197)
T ss_pred             EE
Confidence            54

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.22  E-value=2e-10  Score=109.92  Aligned_cols=108  Identities=21%  Similarity=0.223  Sum_probs=84.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .++.+|||+|||+|..+..++..   +.+|+++|+|+.+++.++++++..|+. +++++++|+..+.          .+.
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~----------~~~  109 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA----------QHL  109 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh----------hhc
Confidence            45679999999999999999884   468999999999999999999999874 6899999987652          134


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      .++||+|++..                      .+..+.+. ..+|++           +.++|||||+++.....
T Consensus       110 ~~~fD~V~~~~----------------------vl~~~~~~-~~~l~~-----------~~~~LkpgG~l~i~~~n  151 (255)
T PRK11036        110 ETPVDLILFHA----------------------VLEWVADP-KSVLQT-----------LWSVLRPGGALSLMFYN  151 (255)
T ss_pred             CCCCCEEEehh----------------------HHHhhCCH-HHHHHH-----------HHHHcCCCeEEEEEEEC
Confidence            56899999732                      22222222 467778           99999999999876433

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.22  E-value=1.6e-10  Score=116.36  Aligned_cols=120  Identities=19%  Similarity=0.298  Sum_probs=96.2

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhh
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      +....+..+||+|||+|..++++|... +...++|+|+++.+++.+.+++.+.|++||.++.+|+..+..         .
T Consensus       118 ~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~---------~  187 (390)
T PRK14121        118 ISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE---------L  187 (390)
T ss_pred             hcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh---------h
Confidence            344567799999999999999999985 567999999999999999999999999999999999976531         2


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      +..++||.|++.-|+      |+.   ..     .. +++  .+..+|+.           +.++|++||.+.+.|.+
T Consensus       188 ~~~~s~D~I~lnFPd------PW~---Kk-----rH-RRl--v~~~fL~e-----------~~RvLkpGG~l~l~TD~  237 (390)
T PRK14121        188 LPSNSVEKIFVHFPV------PWD---KK-----PH-RRV--ISEDFLNE-----------ALRVLKPGGTLELRTDS  237 (390)
T ss_pred             CCCCceeEEEEeCCC------Ccc---cc-----ch-hhc--cHHHHHHH-----------HHHHcCCCcEEEEEEEC
Confidence            456789999998763      221   11     11 222  24778888           99999999999999876

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.22  E-value=2.4e-10  Score=111.62  Aligned_cols=134  Identities=16%  Similarity=0.159  Sum_probs=93.5

Q ss_pred             hhHHHHHhccC--CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccc
Q psy17793         72 LPSILAGHYLD--VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRI  148 (397)
Q Consensus        72 ~~S~l~~~~L~--~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~  148 (397)
                      ++..+...++.  ..+|++|||+|||+|..+..++.+  +..+|+|+|+|+.+++.+++|++.+++.+ +.+...|... 
T Consensus       144 ~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~-  220 (288)
T TIGR00406       144 PTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ-  220 (288)
T ss_pred             HHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc-
Confidence            44445444443  457899999999999999877653  45699999999999999999999998864 5555555322 


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                                  ...++||+|++|..                   ...+       .+++.+           +.++|||
T Consensus       221 ------------~~~~~fDlVvan~~-------------------~~~l-------~~ll~~-----------~~~~Lkp  251 (288)
T TIGR00406       221 ------------PIEGKADVIVANIL-------------------AEVI-------KELYPQ-----------FSRLVKP  251 (288)
T ss_pred             ------------ccCCCceEEEEecC-------------------HHHH-------HHHHHH-----------HHHHcCC
Confidence                        13468999998653                   1221       356666           8899999


Q ss_pred             CcEEEEEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793        229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       229 gG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                      ||+++.|.  +..++ .+.+...++++  ++++.
T Consensus       252 gG~li~sg--i~~~~-~~~v~~~~~~~--f~~~~  280 (288)
T TIGR00406       252 GGWLILSG--ILETQ-AQSVCDAYEQG--FTVVE  280 (288)
T ss_pred             CcEEEEEe--CcHhH-HHHHHHHHHcc--Cceee
Confidence            99999984  33333 33445555553  55554

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.21  E-value=3.4e-11  Score=110.01  Aligned_cols=82  Identities=23%  Similarity=0.370  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      +|.+|||+|||+|..++..+++  +..+|+.||.|+..++.+++|++.+++.+ +++++.|+......       .....
T Consensus        42 ~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~-------~~~~~  112 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLK-------LAKKG  112 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHH-------HHHCT
T ss_pred             CCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHh-------hcccC
Confidence            6889999999999999988774  67799999999999999999999999986 99999998765421       11235


Q ss_pred             cCccEEEEcCCC
Q psy17793        164 ESFDRILLDAPC  175 (397)
Q Consensus       164 ~~fD~Il~DpPC  175 (397)
                      ..||+|++|||+
T Consensus       113 ~~fDiIflDPPY  124 (183)
T PF03602_consen  113 EKFDIIFLDPPY  124 (183)
T ss_dssp             S-EEEEEE--ST
T ss_pred             CCceEEEECCCc
Confidence            789999999995

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.21  E-value=1.7e-10  Score=110.08  Aligned_cols=108  Identities=20%  Similarity=0.270  Sum_probs=84.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhh
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      .++.+|||+|||+|..+..++..+ .+.++|+|+|.|+.+++.+++++++++.. +++++++|+....            
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~------------  122 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA------------  122 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC------------
Confidence            567899999999999998888754 35689999999999999999999998875 5999999987652            


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHH-HHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA-NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~-~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                       ...+|.|++.-                      .+..+. .....++++           +.+.|||||.++.+.-
T Consensus       123 -~~~~D~vv~~~----------------------~l~~l~~~~~~~~l~~-----------i~~~LkpGG~l~l~e~  165 (247)
T PRK15451        123 -IENASMVVLNF----------------------TLQFLEPSERQALLDK-----------IYQGLNPGGALVLSEK  165 (247)
T ss_pred             -CCCCCEEehhh----------------------HHHhCCHHHHHHHHHH-----------HHHhcCCCCEEEEEEe
Confidence             23589988621                      111111 122577888           9999999999999863

>PLN02672 methionine S-methyltransferase

Probab=99.20  E-value=2.7e-10  Score=127.03  Aligned_cols=173  Identities=15%  Similarity=0.122  Sum_probs=114.5

Q ss_pred             cCCCcEEEechhHHHHHhccCCC-----CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQ-----PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-  135 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~-----~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-  135 (397)
                      +..|.++..+.+-.++-. |...     ++.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++++++ 
T Consensus        91 V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~  168 (1082)
T PLN02672         91 EIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALD  168 (1082)
T ss_pred             eCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence            445555555555445433 5432     24689999999999999999875 346999999999999999999998754 


Q ss_pred             ---------------CcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC----Cccccccc--------
Q psy17793        136 ---------------SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ----RPMFYNAN--------  188 (397)
Q Consensus       136 ---------------~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~----~p~~~~~~--------  188 (397)
                                     .+|+++++|.......          ...+||+|+.|||+-..+.    .++.....        
T Consensus       169 ~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~----------~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~  238 (1082)
T PLN02672        169 DDGLPVYDGEGKTLLDRVEFYESDLLGYCRD----------NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSL  238 (1082)
T ss_pred             cccccccccccccccccEEEEECchhhhccc----------cCCceEEEEECCCcCCCcchhhcChhhhhcccccccccc
Confidence                           3589999998754210          1136999999999987762    23322110        


Q ss_pred             -CccchHH---HHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793        189 -SFLNLDK---KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       189 -s~~~~~~---~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                       ....+..   +-..+.-. ++++..           +.++|||||.+++-   +.....+++.+.++++. +++...
T Consensus       239 ~p~~AL~g~~~g~dGL~~y-r~i~~~-----------a~~~L~pgG~l~lE---iG~~q~~~v~~~l~~~~-gf~~~~  300 (1082)
T PLN02672        239 SNYCALQGFVEDQFGLGLI-ARAVEE-----------GISVIKPMGIMIFN---MGGRPGQAVCERLFERR-GFRITK  300 (1082)
T ss_pred             CccccccCCCCCCcHHHHH-HHHHHH-----------HHHhccCCCEEEEE---ECccHHHHHHHHHHHHC-CCCeeE
Confidence             0011100   01222222 788898           99999999999875   55555555554677765 354443

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.19  E-value=4.2e-11  Score=112.13  Aligned_cols=105  Identities=20%  Similarity=0.245  Sum_probs=86.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .+|.+|||+|||-|..+..+|.+   +..|+|+|++++.++.++..+.+.|+. |......+.++.           ...
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~-----------~~~  122 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLA-----------SAG  122 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHH-----------hcC
Confidence            46889999999999999999985   489999999999999999999998875 445444444432           233


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                      ++||+|+|                      -+.+++++.. ..++++           +.+++||||.++.||=
T Consensus       123 ~~FDvV~c----------------------mEVlEHv~dp-~~~~~~-----------c~~lvkP~G~lf~STi  162 (243)
T COG2227         123 GQFDVVTC----------------------MEVLEHVPDP-ESFLRA-----------CAKLVKPGGILFLSTI  162 (243)
T ss_pred             CCccEEEE----------------------hhHHHccCCH-HHHHHH-----------HHHHcCCCcEEEEecc
Confidence            79999998                      4888888777 568999           9999999999999953

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.19  E-value=2.2e-10  Score=106.82  Aligned_cols=114  Identities=20%  Similarity=0.180  Sum_probs=78.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .++|.+|||+|||||..+..+++..+..+.|+|+|+++.           ..+.+++++++|+......   +.-..++.
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~---~~i~~~~~  114 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVL---KALLERVG  114 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHH---HHHHHHhC
Confidence            367889999999999999999998877789999999981           2345789999998764200   00001234


Q ss_pred             ccCccEEEEcC-C-CCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        163 KESFDRILLDA-P-CSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       163 ~~~fD~Il~Dp-P-CSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      .++||.|++|+ | ++|.         .     ..+......+...+|+.           +.++|||||.++..
T Consensus       115 ~~~~D~V~S~~~~~~~g~---------~-----~~d~~~~~~~~~~~L~~-----------~~~~LkpGG~~vi~  164 (209)
T PRK11188        115 DSKVQVVMSDMAPNMSGT---------P-----AVDIPRAMYLVELALDM-----------CRDVLAPGGSFVVK  164 (209)
T ss_pred             CCCCCEEecCCCCccCCC---------h-----HHHHHHHHHHHHHHHHH-----------HHHHcCCCCEEEEE
Confidence            57899999986 3 1110         0     01111111123567777           99999999999986

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.18  E-value=1.4e-10  Score=116.32  Aligned_cols=98  Identities=21%  Similarity=0.326  Sum_probs=63.1

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch--h
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ--I  154 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~--~  154 (397)
                      +..+++..++ +|||++||.|++|+.+|..   ..+|+|+|+++.+++.+++|++.+|++|++++.+++.++.....  .
T Consensus       189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r  264 (352)
T PF05958_consen  189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAR  264 (352)
T ss_dssp             HHHHCTT-TT-EEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-
T ss_pred             HHHHhhcCCC-cEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhH
Confidence            4455666665 8999999999999999884   46899999999999999999999999999999988765421100  0


Q ss_pred             hH---HHhhhcccCccEEEEcCCCCCC
Q psy17793        155 DI---ERMKLQKESFDRILLDAPCSGF  178 (397)
Q Consensus       155 d~---~~~~~~~~~fD~Il~DpPCSg~  178 (397)
                      +.   .........+|.|++|||-+|.
T Consensus       265 ~~~~~~~~~~~~~~~d~vilDPPR~G~  291 (352)
T PF05958_consen  265 EFNRLKGIDLKSFKFDAVILDPPRAGL  291 (352)
T ss_dssp             GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred             HHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence            00   0000112368999999997774

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.18  E-value=2e-10  Score=116.21  Aligned_cols=84  Identities=18%  Similarity=0.254  Sum_probs=69.5

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhh
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      ++..++.+|||+|||+|..++.+|..   ..+|+|+|+|+.+++.+++|++.++++++++.++|+..+...         
T Consensus       229 l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~---------  296 (374)
T TIGR02085       229 VREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA---------  296 (374)
T ss_pred             HHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh---------
Confidence            33346789999999999999988863   468999999999999999999999998999999999765310         


Q ss_pred             hcccCccEEEEcCCCCC
Q psy17793        161 LQKESFDRILLDAPCSG  177 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg  177 (397)
                       ....||+|++|||..|
T Consensus       297 -~~~~~D~vi~DPPr~G  312 (374)
T TIGR02085       297 -QMSAPELVLVNPPRRG  312 (374)
T ss_pred             -cCCCCCEEEECCCCCC
Confidence             1245999999999543

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.17  E-value=5.2e-10  Score=101.87  Aligned_cols=118  Identities=23%  Similarity=0.302  Sum_probs=82.0

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCc--------EEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcc
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG--------TLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYD  144 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~--------~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D  144 (397)
                      +..+..+.++++|+.|||-+||+|+..+..|....+..        .++|+|+++++++.+++|++.+|+.. |.+...|
T Consensus        17 A~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D   96 (179)
T PF01170_consen   17 AAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD   96 (179)
T ss_dssp             HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred             HHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence            44455666788999999999999999988877654433        49999999999999999999999875 8899999


Q ss_pred             cccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q psy17793        145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIP  224 (397)
Q Consensus       145 ~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~  224 (397)
                      ++.+.           +..+++|.|++|||+   |.+            ...-.....+-.+++++           +.+
T Consensus        97 ~~~l~-----------~~~~~~d~IvtnPPy---G~r------------~~~~~~~~~ly~~~~~~-----------~~~  139 (179)
T PF01170_consen   97 ARELP-----------LPDGSVDAIVTNPPY---GRR------------LGSKKDLEKLYRQFLRE-----------LKR  139 (179)
T ss_dssp             GGGGG-----------GTTSBSCEEEEE--S---TTS------------HCHHHHHHHHHHHHHHH-----------HHC
T ss_pred             hhhcc-----------cccCCCCEEEECcch---hhh------------ccCHHHHHHHHHHHHHH-----------HHH
Confidence            98873           345689999999994   211            11222234444778888           888


Q ss_pred             cccC
Q psy17793        225 LLKK  228 (397)
Q Consensus       225 lLkp  228 (397)
                      .|++
T Consensus       140 ~l~~  143 (179)
T PF01170_consen  140 VLKP  143 (179)
T ss_dssp             HSTT
T ss_pred             HCCC
Confidence            8998

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.16  E-value=3.8e-11  Score=95.62  Aligned_cols=95  Identities=18%  Similarity=0.247  Sum_probs=72.4

Q ss_pred             EEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEE
Q psy17793         90 LDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRI  169 (397)
Q Consensus        90 LDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~I  169 (397)
                      ||+|||+|..+..+++.  +...|+++|+++.+++.++++....+   +.+...|+..+.           +++++||.|
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~---~~~~~~d~~~l~-----------~~~~sfD~v   64 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG---VSFRQGDAEDLP-----------FPDNSFDVV   64 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST---EEEEESBTTSSS-----------S-TT-EEEE
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC---chheeehHHhCc-----------ccccccccc
Confidence            89999999999999996  57899999999999999998876544   558889988763           567899999


Q ss_pred             EEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793        170 LLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY  234 (397)
Q Consensus       170 l~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy  234 (397)
                      ++.                      ..+..+ +.+.+++++           +.++|||||++++
T Consensus        65 ~~~----------------------~~~~~~-~~~~~~l~e-----------~~rvLk~gG~l~~   95 (95)
T PF08241_consen   65 FSN----------------------SVLHHL-EDPEAALRE-----------IYRVLKPGGRLVI   95 (95)
T ss_dssp             EEE----------------------SHGGGS-SHHHHHHHH-----------HHHHEEEEEEEEE
T ss_pred             ccc----------------------cceeec-cCHHHHHHH-----------HHHHcCcCeEEeC
Confidence            971                      112222 233778888           9999999999974

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=99.16  E-value=5.4e-10  Score=109.14  Aligned_cols=93  Identities=18%  Similarity=0.204  Sum_probs=76.2

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ...|.+++|+.+||++||.|+.|..++..+++.++|+|+|.|+.+++.++++++.  .++++++..|+.++...      
T Consensus        12 l~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~------   83 (296)
T PRK00050         12 VDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEV------   83 (296)
T ss_pred             HHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHH------
Confidence            3456678999999999999999999999876678999999999999999998876  46799999999876311      


Q ss_pred             HhhhcccCccEEEEcCCCCCCC
Q psy17793        158 RMKLQKESFDRILLDAPCSGFG  179 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G  179 (397)
                       ......+||.|++|.=+|+.-
T Consensus        84 -l~~~~~~vDgIl~DLGvSs~Q  104 (296)
T PRK00050         84 -LAEGLGKVDGILLDLGVSSPQ  104 (296)
T ss_pred             -HHcCCCccCEEEECCCccccc
Confidence             000112799999999999863

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.16  E-value=3.8e-10  Score=111.66  Aligned_cols=86  Identities=12%  Similarity=0.258  Sum_probs=72.7

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      ....++++++++|||+|||+|..+..+|...+..+.|+++|+++.+++.++++++++|++++.++.+|+.....      
T Consensus        72 ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~------  145 (322)
T PRK13943         72 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP------  145 (322)
T ss_pred             HHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc------
Confidence            33456688999999999999999999999876567899999999999999999999999999999999865421      


Q ss_pred             HHhhhcccCccEEEEcC
Q psy17793        157 ERMKLQKESFDRILLDA  173 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~Dp  173 (397)
                           ....||+|+++.
T Consensus       146 -----~~~~fD~Ii~~~  157 (322)
T PRK13943        146 -----EFAPYDVIFVTV  157 (322)
T ss_pred             -----ccCCccEEEECC
Confidence                 225699999864

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.15  E-value=2.6e-10  Score=114.90  Aligned_cols=88  Identities=20%  Similarity=0.321  Sum_probs=67.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh---h--
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM---K--  160 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~---~--  160 (397)
                      +.+|||+|||+|..++.++..   ..+|+|+|+++.+++.+++|++.+|++|++++.+|+.++..... .....   .  
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~---~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~-~~~~~~~~~~~  282 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARN---FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMN-GVREFNRLKGI  282 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh-hcccccccccc
Confidence            357999999999999988874   35899999999999999999999999999999999977531100 00000   0  


Q ss_pred             -hcccCccEEEEcCCCCC
Q psy17793        161 -LQKESFDRILLDAPCSG  177 (397)
Q Consensus       161 -~~~~~fD~Il~DpPCSg  177 (397)
                       ....+||+|++|||.+|
T Consensus       283 ~~~~~~~D~v~lDPPR~G  300 (362)
T PRK05031        283 DLKSYNFSTIFVDPPRAG  300 (362)
T ss_pred             cccCCCCCEEEECCCCCC
Confidence             00125899999999654

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.15  E-value=1e-10  Score=113.36  Aligned_cols=123  Identities=23%  Similarity=0.267  Sum_probs=85.3

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRI  148 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~  148 (397)
                      |...-..+...+++++|++|||+|||.|+.+.++|+..  +.+|+++.+|+...+.+++++++.|+.+ +++...|.+++
T Consensus        47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~  124 (273)
T PF02353_consen   47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL  124 (273)
T ss_dssp             HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence            33334456777889999999999999999999999975  5799999999999999999999999875 99999998765


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                      .              .+||+|+.          -++..+..    .   +.+    ..+++.           +.++|||
T Consensus       125 ~--------------~~fD~IvS----------i~~~Ehvg----~---~~~----~~~f~~-----------~~~~Lkp  158 (273)
T PF02353_consen  125 P--------------GKFDRIVS----------IEMFEHVG----R---KNY----PAFFRK-----------ISRLLKP  158 (273)
T ss_dssp             ----------------S-SEEEE----------ESEGGGTC----G---GGH----HHHHHH-----------HHHHSET
T ss_pred             C--------------CCCCEEEE----------EechhhcC----h---hHH----HHHHHH-----------HHHhcCC
Confidence            2              38999986          01111111    0   112    456677           8999999


Q ss_pred             CcEEEEEecCCC
Q psy17793        229 DGILVYCTCSLS  240 (397)
Q Consensus       229 gG~lvysTCS~~  240 (397)
                      ||+++..+.+..
T Consensus       159 gG~~~lq~i~~~  170 (273)
T PF02353_consen  159 GGRLVLQTITHR  170 (273)
T ss_dssp             TEEEEEEEEEE-
T ss_pred             CcEEEEEecccc
Confidence            999988766543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.15  E-value=3.9e-10  Score=108.72  Aligned_cols=115  Identities=19%  Similarity=0.201  Sum_probs=87.1

Q ss_pred             HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh
Q psy17793         75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI  154 (397)
Q Consensus        75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~  154 (397)
                      .-+...+.+.++.+|||+|||+|..+..++...  +.+|+++|+|+.+++.++++...  ..++.+...|+....     
T Consensus        42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~-----  112 (263)
T PTZ00098         42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKD-----  112 (263)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCC-----
Confidence            334456788899999999999999999888753  46999999999999999987654  246889999987542     


Q ss_pred             hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHH-HHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793        155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA-NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV  233 (397)
Q Consensus       155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~-~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv  233 (397)
                            ++.++||+|++-                      ..+..+. .-..++|++           +.++|||||+++
T Consensus       113 ------~~~~~FD~V~s~----------------------~~l~h~~~~d~~~~l~~-----------i~r~LkPGG~lv  153 (263)
T PTZ00098        113 ------FPENTFDMIYSR----------------------DAILHLSYADKKKLFEK-----------CYKWLKPNGILL  153 (263)
T ss_pred             ------CCCCCeEEEEEh----------------------hhHHhCCHHHHHHHHHH-----------HHHHcCCCcEEE
Confidence                  455789999971                      1121211 122677888           999999999999


Q ss_pred             EEec
Q psy17793        234 YCTC  237 (397)
Q Consensus       234 ysTC  237 (397)
                      .+.-
T Consensus       154 i~d~  157 (263)
T PTZ00098        154 ITDY  157 (263)
T ss_pred             EEEe
Confidence            8743

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.15  E-value=4.1e-10  Score=108.60  Aligned_cols=116  Identities=20%  Similarity=0.233  Sum_probs=93.3

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccc
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSS  152 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~  152 (397)
                      -..+...|.++||++|||+|||-|+.+.++|+..  +.+|+|+++|++..+.++++++..|++ +|++...|...+.   
T Consensus        61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---  135 (283)
T COG2230          61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---  135 (283)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---
Confidence            3456677889999999999999999999999975  589999999999999999999999998 7999999987752   


Q ss_pred             hhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHH-HHHHHHHHHhhhhccccccccccccCCcE
Q psy17793        153 QIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN-IQKKLLQAVYRFVSLFDWQGIPLLKKDGI  231 (397)
Q Consensus       153 ~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~-~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~  231 (397)
                                 +.||+|+.                      -...+.+.. .-...++.           +.++|+|||+
T Consensus       136 -----------e~fDrIvS----------------------vgmfEhvg~~~~~~ff~~-----------~~~~L~~~G~  171 (283)
T COG2230         136 -----------EPFDRIVS----------------------VGMFEHVGKENYDDFFKK-----------VYALLKPGGR  171 (283)
T ss_pred             -----------cccceeee----------------------hhhHHHhCcccHHHHHHH-----------HHhhcCCCce
Confidence                       45999985                      122222221 01456666           9999999999


Q ss_pred             EEEEecC
Q psy17793        232 LVYCTCS  238 (397)
Q Consensus       232 lvysTCS  238 (397)
                      ++.-|-+
T Consensus       172 ~llh~I~  178 (283)
T COG2230         172 MLLHSIT  178 (283)
T ss_pred             EEEEEec
Confidence            9888544

>PRK08317 hypothetical protein; Provisional

Probab=99.14  E-value=6.3e-10  Score=103.72  Aligned_cols=115  Identities=22%  Similarity=0.328  Sum_probs=87.1

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ...+.+.++.+|||+|||+|..+..++..+++.++++++|.++.+++.++++... ...++.+...|+....        
T Consensus        12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~--------   82 (241)
T PRK08317         12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLP--------   82 (241)
T ss_pred             HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCC--------
Confidence            3456778899999999999999999999875567999999999999999888332 3356888888886542        


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                         +..+.||.|+++--                      +..+.. ...++++           +.++|||||.+++..+
T Consensus        83 ---~~~~~~D~v~~~~~----------------------~~~~~~-~~~~l~~-----------~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         83 ---FPDGSFDAVRSDRV----------------------LQHLED-PARALAE-----------IARVLRPGGRVVVLDT  125 (241)
T ss_pred             ---CCCCCceEEEEech----------------------hhccCC-HHHHHHH-----------HHHHhcCCcEEEEEec
Confidence               34568999997321                      111111 1556777           8899999999998876


Q ss_pred             C
Q psy17793        238 S  238 (397)
Q Consensus       238 S  238 (397)
                      .
T Consensus       126 ~  126 (241)
T PRK08317        126 D  126 (241)
T ss_pred             C
Confidence            4

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.14  E-value=1.3e-10  Score=107.42  Aligned_cols=79  Identities=29%  Similarity=0.399  Sum_probs=60.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      .++|+.|+||+||-|.+++.+|.. .....|+|+|++|.+++.+++|++.+++++ |.++++|++.+.            
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~------------  165 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL------------  165 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--------------
T ss_pred             CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc------------
Confidence            578999999999999999999885 356789999999999999999999999986 889999998874            


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      ....||+|+++.|
T Consensus       166 ~~~~~drvim~lp  178 (200)
T PF02475_consen  166 PEGKFDRVIMNLP  178 (200)
T ss_dssp             -TT-EEEEEE--T
T ss_pred             CccccCEEEECCh
Confidence            2468999999988

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PHA03411 putative methyltransferase; Provisional

Probab=99.12  E-value=1.6e-09  Score=104.25  Aligned_cols=146  Identities=12%  Similarity=0.120  Sum_probs=96.3

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhh
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      +.+..+.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++++     .+++++++|+..+.           
T Consensus        60 ~~~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~-----------  122 (279)
T PHA03411         60 IDAHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFE-----------  122 (279)
T ss_pred             hccccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhc-----------
Confidence            445566799999999999998887764 2468999999999999998763     46788999987652           


Q ss_pred             hcccCccEEEEcCCCCCCCCC---cccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE--EEE
Q psy17793        161 LQKESFDRILLDAPCSGFGQR---PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL--VYC  235 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~---p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l--vys  235 (397)
                       ...+||.|++|||.......   ....++-.    ....+.+ .+ .+++..           +..+|+|+|.+  +|+
T Consensus       123 -~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG----~~g~~~l-~~-~~~l~~-----------v~~~L~p~G~~~~~ys  184 (279)
T PHA03411        123 -SNEKFDVVISNPPFGKINTTDTKDVFEYTGG----EFEFKVM-TL-GQKFAD-----------VGYFIVPTGSAGFAYS  184 (279)
T ss_pred             -ccCCCcEEEEcCCccccCchhhhhhhhhccC----ccccccc-cH-HHHHhh-----------hHheecCCceEEEEEe
Confidence             23579999999997553310   00000000    0000000 01 355565           78899999965  455


Q ss_pred             ecCC-CccccHHHHHHHHHHCCCcEEEe
Q psy17793        236 TCSL-SVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       236 TCS~-~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                      +-.+ |.--..+....+|+.+ ++.+.+
T Consensus       185 s~~~y~~sl~~~~y~~~l~~~-g~~~~~  211 (279)
T PHA03411        185 GRPYYDGTMKSNKYLKWSKQT-GLVTYA  211 (279)
T ss_pred             ccccccccCCHHHHHHHHHhc-CcEecC
Confidence            4322 4444566777888888 576654

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.12  E-value=5.4e-10  Score=101.60  Aligned_cols=82  Identities=26%  Similarity=0.370  Sum_probs=67.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      -.|.++||++||+|+.++..+++  +..+++.+|.|...+..+++|++.+++. +.+++..|+..++..       . -.
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~-------~-~~  111 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQ-------L-GT  111 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHh-------c-CC
Confidence            46889999999999999988885  6789999999999999999999999964 588999998855321       0 01


Q ss_pred             ccCccEEEEcCCC
Q psy17793        163 KESFDRILLDAPC  175 (397)
Q Consensus       163 ~~~fD~Il~DpPC  175 (397)
                      .+.||+|++|||+
T Consensus       112 ~~~FDlVflDPPy  124 (187)
T COG0742         112 REPFDLVFLDPPY  124 (187)
T ss_pred             CCcccEEEeCCCC
Confidence            1249999999994

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.12  E-value=1.5e-09  Score=103.72  Aligned_cols=119  Identities=19%  Similarity=0.162  Sum_probs=83.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ..++.+|||+|||+|..+..++..  +..+|+|+|+|+.+++.+++|++++++. .+.+..+                  
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~--g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~------------------  176 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKL--GAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG------------------  176 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC------------------
Confidence            467899999999999888766553  3457999999999999999999999873 2322111                  


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV  241 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~  241 (397)
                       ..+||+|++|..                   ...+       ..++..           +.++|||||+++++..  ..
T Consensus       177 -~~~fD~Vvani~-------------------~~~~-------~~l~~~-----------~~~~LkpgG~lilsgi--~~  216 (250)
T PRK00517        177 -DLKADVIVANIL-------------------ANPL-------LELAPD-----------LARLLKPGGRLILSGI--LE  216 (250)
T ss_pred             -CCCcCEEEEcCc-------------------HHHH-------HHHHHH-----------HHHhcCCCcEEEEEEC--cH
Confidence             126999998542                   1212       445666           8899999999999843  33


Q ss_pred             cccHHHHHHHHHHCCCcEEEec
Q psy17793        242 EENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       242 eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                       +..+-+...++++ +++++..
T Consensus       217 -~~~~~v~~~l~~~-Gf~~~~~  236 (250)
T PRK00517        217 -EQADEVLEAYEEA-GFTLDEV  236 (250)
T ss_pred             -hhHHHHHHHHHHC-CCEEEEE
Confidence             3444555666666 5666543

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.12  E-value=5.3e-10  Score=104.42  Aligned_cols=124  Identities=20%  Similarity=0.340  Sum_probs=100.8

Q ss_pred             chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEE-cccccc
Q psy17793         71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHV-YDSTRI  148 (397)
Q Consensus        71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~-~D~~~~  148 (397)
                      ...-.++..++......+||++|++.|.-|+.+|..+...++++++|+++++.+.+++|+++.|+.+ |+++. +|+...
T Consensus        45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~  124 (219)
T COG4122          45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV  124 (219)
T ss_pred             hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence            5666777778888888999999999999999999998768899999999999999999999999987 77887 587765


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                      ...         ...++||.|++|+-                   +...       .+.++.           +.++|+|
T Consensus       125 l~~---------~~~~~fDliFIDad-------------------K~~y-------p~~le~-----------~~~lLr~  158 (219)
T COG4122         125 LSR---------LLDGSFDLVFIDAD-------------------KADY-------PEYLER-----------ALPLLRP  158 (219)
T ss_pred             HHh---------ccCCCccEEEEeCC-------------------hhhC-------HHHHHH-----------HHHHhCC
Confidence            421         24589999999985                   1221       455666           8899999


Q ss_pred             CcEEEEEecCCC
Q psy17793        229 DGILVYCTCSLS  240 (397)
Q Consensus       229 gG~lvysTCS~~  240 (397)
                      ||.+|.-.-.+.
T Consensus       159 GGliv~DNvl~~  170 (219)
T COG4122         159 GGLIVADNVLFG  170 (219)
T ss_pred             CcEEEEeecccC
Confidence            999987654444

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.10  E-value=4.9e-10  Score=113.45  Aligned_cols=87  Identities=18%  Similarity=0.195  Sum_probs=70.5

Q ss_pred             HHHhccCCC-CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh
Q psy17793         76 LAGHYLDVQ-PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI  154 (397)
Q Consensus        76 l~~~~L~~~-~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~  154 (397)
                      +++..+... ++.+|||++||+|..++.+|...+ ...|+++|+++.+++.+++|++.++++++++.+.|+..+..    
T Consensus        47 ~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~----  121 (382)
T PRK04338         47 LVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLH----  121 (382)
T ss_pred             HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHh----
Confidence            333444333 457999999999999999988653 45899999999999999999999999988899999876531    


Q ss_pred             hHHHhhhcccCccEEEEcCC
Q psy17793        155 DIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       155 d~~~~~~~~~~fD~Il~DpP  174 (397)
                             ....||+|++|||
T Consensus       122 -------~~~~fD~V~lDP~  134 (382)
T PRK04338        122 -------EERKFDVVDIDPF  134 (382)
T ss_pred             -------hcCCCCEEEECCC
Confidence                   0356999999998

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.10  E-value=7.2e-10  Score=102.12  Aligned_cols=113  Identities=14%  Similarity=0.167  Sum_probs=82.2

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d  155 (397)
                      .+...+...++.+|||+|||+|..+..+|..   +..|+|+|+|+.+++.++++++..|++ +.+...|.....      
T Consensus        21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~------   90 (195)
T TIGR00477        21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAA------   90 (195)
T ss_pred             HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcc------
Confidence            3335566666779999999999999999884   469999999999999999999988875 777777765431      


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                           + .++||.|++.....          ...    ...       ...+++.           +.++|||||++++.
T Consensus        91 -----~-~~~fD~I~~~~~~~----------~~~----~~~-------~~~~l~~-----------~~~~LkpgG~lli~  132 (195)
T TIGR00477        91 -----L-NEDYDFIFSTVVFM----------FLQ----AGR-------VPEIIAN-----------MQAHTRPGGYNLIV  132 (195)
T ss_pred             -----c-cCCCCEEEEecccc----------cCC----HHH-------HHHHHHH-----------HHHHhCCCcEEEEE
Confidence                 2 35799999743310          001    111       1456777           88999999996655


Q ss_pred             e
Q psy17793        236 T  236 (397)
Q Consensus       236 T  236 (397)
                      +
T Consensus       133 ~  133 (195)
T TIGR00477       133 A  133 (195)
T ss_pred             E
Confidence            3

Part of a tellurite-reducing operon tehA and tehB

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.10  E-value=9e-10  Score=101.15  Aligned_cols=82  Identities=16%  Similarity=0.134  Sum_probs=66.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      +|.+|||+|||+|..++.++.+  +...|+++|.++..++.+++|++.+++. ++++++.|+......       .....
T Consensus        49 ~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~-------~~~~~  119 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKF-------LAKKP  119 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHH-------hhccC
Confidence            5789999999999999988885  4568999999999999999999999986 689999999665311       00011


Q ss_pred             cCccEEEEcCCC
Q psy17793        164 ESFDRILLDAPC  175 (397)
Q Consensus       164 ~~fD~Il~DpPC  175 (397)
                      ..||+|++|||+
T Consensus       120 ~~~dvv~~DPPy  131 (189)
T TIGR00095       120 TFDNVIYLDPPF  131 (189)
T ss_pred             CCceEEEECcCC
Confidence            248999999995

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.10  E-value=9.1e-10  Score=105.27  Aligned_cols=114  Identities=16%  Similarity=0.204  Sum_probs=85.2

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRIN  149 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~  149 (397)
                      |...+.-+...+.+.++.+|||+|||+|..+..++... +.++|+|+|+|+.+++.+++++     .++.+..+|+..+.
T Consensus        16 ~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~   89 (258)
T PRK01683         16 RTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ   89 (258)
T ss_pred             hhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC
Confidence            44344444455667788999999999999999999875 4579999999999999998763     46788888886552


Q ss_pred             ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793        150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD  229 (397)
Q Consensus       150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg  229 (397)
                                  ...+||+|+++...                   ..+..    +.++|++           +.+.||||
T Consensus        90 ------------~~~~fD~v~~~~~l-------------------~~~~d----~~~~l~~-----------~~~~Lkpg  123 (258)
T PRK01683         90 ------------PPQALDLIFANASL-------------------QWLPD----HLELFPR-----------LVSLLAPG  123 (258)
T ss_pred             ------------CCCCccEEEEccCh-------------------hhCCC----HHHHHHH-----------HHHhcCCC
Confidence                        23589999985430                   11111    2567777           89999999


Q ss_pred             cEEEEE
Q psy17793        230 GILVYC  235 (397)
Q Consensus       230 G~lvys  235 (397)
                      |.++.+
T Consensus       124 G~~~~~  129 (258)
T PRK01683        124 GVLAVQ  129 (258)
T ss_pred             cEEEEE
Confidence            999886

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.10  E-value=5.8e-10  Score=111.93  Aligned_cols=88  Identities=17%  Similarity=0.273  Sum_probs=66.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh--hH---HHhhh
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI--DI---ERMKL  161 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~--d~---~~~~~  161 (397)
                      ++|||+|||+|.+++.++..   ...|+|+|+++.+++.+++|++.+|++|++++.+|+.++......  ..   .....
T Consensus       199 ~~vlDl~~G~G~~sl~la~~---~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~  275 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQN---FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL  275 (353)
T ss_pred             CcEEEEeccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence            47999999999999988885   358999999999999999999999999999999999775311000  00   00000


Q ss_pred             cccCccEEEEcCCCCC
Q psy17793        162 QKESFDRILLDAPCSG  177 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg  177 (397)
                      ....||.|++|||-+|
T Consensus       276 ~~~~~d~v~lDPPR~G  291 (353)
T TIGR02143       276 KSYNCSTIFVDPPRAG  291 (353)
T ss_pred             ccCCCCEEEECCCCCC
Confidence            0124899999999544

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.10  E-value=4.2e-10  Score=107.25  Aligned_cols=115  Identities=17%  Similarity=0.120  Sum_probs=85.4

Q ss_pred             EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793         69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI  148 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~  148 (397)
                      +|...+..+...+...++.+|||+|||+|..+..++..   ..+|+++|+|+.+++.++++..     .+.++++|+..+
T Consensus        26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~   97 (251)
T PRK10258         26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL   97 (251)
T ss_pred             HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC
Confidence            57666666666776667789999999999999888763   4689999999999999887642     235677887654


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                      .           +..++||+|+++.+           ..|        ...    ...+|.+           +.++|||
T Consensus        98 ~-----------~~~~~fD~V~s~~~-----------l~~--------~~d----~~~~l~~-----------~~~~Lk~  132 (251)
T PRK10258         98 P-----------LATATFDLAWSNLA-----------VQW--------CGN----LSTALRE-----------LYRVVRP  132 (251)
T ss_pred             c-----------CCCCcEEEEEECch-----------hhh--------cCC----HHHHHHH-----------HHHHcCC
Confidence            2           45568999997432           111        111    1567777           8999999


Q ss_pred             CcEEEEEe
Q psy17793        229 DGILVYCT  236 (397)
Q Consensus       229 gG~lvysT  236 (397)
                      ||.++++|
T Consensus       133 gG~l~~~~  140 (251)
T PRK10258        133 GGVVAFTT  140 (251)
T ss_pred             CeEEEEEe
Confidence            99999985

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.09  E-value=5.5e-10  Score=106.88  Aligned_cols=104  Identities=18%  Similarity=0.194  Sum_probs=79.6

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ...+...++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.++++       ++++..+|+..+.        
T Consensus        22 l~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--------   85 (255)
T PRK14103         22 LARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK--------   85 (255)
T ss_pred             HHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC--------
Confidence            345666788999999999999999999875 457999999999999988653       4678888886542        


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                          ..++||+|+++..                      +..+.. +.+++++           +.+.|||||.++..
T Consensus        86 ----~~~~fD~v~~~~~----------------------l~~~~d-~~~~l~~-----------~~~~LkpgG~l~~~  125 (255)
T PRK14103         86 ----PKPDTDVVVSNAA----------------------LQWVPE-HADLLVR-----------WVDELAPGSWIAVQ  125 (255)
T ss_pred             ----CCCCceEEEEehh----------------------hhhCCC-HHHHHHH-----------HHHhCCCCcEEEEE
Confidence                2368999998443                      111111 2567777           89999999999876

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.08  E-value=4e-10  Score=104.71  Aligned_cols=122  Identities=16%  Similarity=0.281  Sum_probs=91.0

Q ss_pred             HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccch
Q psy17793         75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQ  153 (397)
Q Consensus        75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~  153 (397)
                      .++..++......+||++|++.|.-|+++|..+++.++|+++|+++.+.+.+++++++.|+. +|+++.+|+....... 
T Consensus        35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l-  113 (205)
T PF01596_consen   35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPEL-  113 (205)
T ss_dssp             HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHH-
T ss_pred             HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHH-
Confidence            34444444444569999999999999999998888899999999999999999999999986 5999999998764210 


Q ss_pred             hhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793        154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV  233 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv  233 (397)
                          ......+.||.|++|+.                   +...       ...++.           +.++|++||.|+
T Consensus       114 ----~~~~~~~~fD~VFiDa~-------------------K~~y-------~~y~~~-----------~~~ll~~ggvii  152 (205)
T PF01596_consen  114 ----ANDGEEGQFDFVFIDAD-------------------KRNY-------LEYFEK-----------ALPLLRPGGVII  152 (205)
T ss_dssp             ----HHTTTTTSEEEEEEEST-------------------GGGH-------HHHHHH-----------HHHHEEEEEEEE
T ss_pred             ----HhccCCCceeEEEEccc-------------------ccch-------hhHHHH-----------HhhhccCCeEEE
Confidence                00011357999999996                   2222       233444           778999999999


Q ss_pred             EEecC
Q psy17793        234 YCTCS  238 (397)
Q Consensus       234 ysTCS  238 (397)
                      .-..-
T Consensus       153 ~DN~l  157 (205)
T PF01596_consen  153 ADNVL  157 (205)
T ss_dssp             EETTT
T ss_pred             Ecccc
Confidence            87543

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.06  E-value=8.8e-10  Score=111.17  Aligned_cols=78  Identities=15%  Similarity=0.188  Sum_probs=67.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF  166 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f  166 (397)
                      -+|||++||+|..++.++....+...|+++|+|+.+++.+++|++.+++.++++++.|+..+...          ....|
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~----------~~~~f  115 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY----------RNRKF  115 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH----------hCCCC
Confidence            48999999999999999986545578999999999999999999999998899999999876421          23579


Q ss_pred             cEEEEcCC
Q psy17793        167 DRILLDAP  174 (397)
Q Consensus       167 D~Il~DpP  174 (397)
                      |+|.+||+
T Consensus       116 DvIdlDPf  123 (374)
T TIGR00308       116 HVIDIDPF  123 (374)
T ss_pred             CEEEeCCC
Confidence            99999996

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.06  E-value=1.4e-09  Score=113.18  Aligned_cols=114  Identities=24%  Similarity=0.237  Sum_probs=85.4

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      +...+.+.++.+|||+|||+|..+..++...  +.+|+|+|+|+.+++.++++....+ .++++..+|+....       
T Consensus       258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~-------  327 (475)
T PLN02336        258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKT-------  327 (475)
T ss_pred             HHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCC-------
Confidence            3344556788999999999999999998864  4689999999999999998876443 35889999987642       


Q ss_pred             HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                          ++.++||+|++.-                      .+..+.+. .++|++           +.++|||||+|+.++
T Consensus       328 ----~~~~~fD~I~s~~----------------------~l~h~~d~-~~~l~~-----------~~r~LkpgG~l~i~~  369 (475)
T PLN02336        328 ----YPDNSFDVIYSRD----------------------TILHIQDK-PALFRS-----------FFKWLKPGGKVLISD  369 (475)
T ss_pred             ----CCCCCEEEEEECC----------------------cccccCCH-HHHHHH-----------HHHHcCCCeEEEEEE
Confidence                3456899999721                      11111111 467777           999999999999886


Q ss_pred             cC
Q psy17793        237 CS  238 (397)
Q Consensus       237 CS  238 (397)
                      -.
T Consensus       370 ~~  371 (475)
T PLN02336        370 YC  371 (475)
T ss_pred             ec
Confidence            43

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.05  E-value=8.1e-10  Score=90.52  Aligned_cols=71  Identities=14%  Similarity=0.213  Sum_probs=58.2

Q ss_pred             EEEEcCCCChHHHHHHHHc--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793         89 VLDMCAAPGNKLTHIALLM--NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF  166 (397)
Q Consensus        89 VLDlcagpG~kt~~lA~~~--~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f  166 (397)
                      |||+|||+|..+..++...  +...+++++|+|+.+++.++++.+..+. ++++++.|+.++.           +..++|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~-----------~~~~~~   68 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLP-----------FSDGKF   68 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHH-----------HHSSSE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCc-----------ccCCCe
Confidence            7999999999999999886  2237999999999999999999998777 7899999998763           345689


Q ss_pred             cEEEE
Q psy17793        167 DRILL  171 (397)
Q Consensus       167 D~Il~  171 (397)
                      |.|++
T Consensus        69 D~v~~   73 (101)
T PF13649_consen   69 DLVVC   73 (101)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            99997

>PHA03412 putative methyltransferase; Provisional

Probab=99.05  E-value=1.4e-09  Score=102.60  Aligned_cols=112  Identities=12%  Similarity=0.173  Sum_probs=80.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~--~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .+.+|||+|||+|..+..++..+.  ....|+|+|+|+.+++.+++|+.     ++.+...|+....            .
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~~~------------~  111 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALTTE------------F  111 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhccc------------c
Confidence            467999999999999999988653  34689999999999999998753     4778888886542            2


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      .++||+|++|||+.-.... +..  -.    ...    .....++++.           |.+++++|+.|+-+
T Consensus       112 ~~~FDlIIsNPPY~~~~~~-d~~--ar----~~g----~~~~~~li~~-----------A~~Ll~~G~~ILP~  162 (241)
T PHA03412        112 DTLFDMAISNPPFGKIKTS-DFK--GK----YTG----AEFEYKVIER-----------ASQIARQGTFIIPQ  162 (241)
T ss_pred             cCCccEEEECCCCCCcccc-ccC--Cc----ccc----cHHHHHHHHH-----------HHHHcCCCEEEeCc
Confidence            3589999999998754321 000  00    011    1223667888           88888888775533

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.05  E-value=3.5e-09  Score=99.12  Aligned_cols=117  Identities=28%  Similarity=0.430  Sum_probs=87.2

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhh
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d  155 (397)
                      ....+...++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+.. ++.+...|+....      
T Consensus        43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------  116 (239)
T PRK00216         43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP------  116 (239)
T ss_pred             HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC------
Confidence            344556677889999999999999999987643579999999999999999998876553 5888888887652      


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                           +..+.||+|++.-     +                 +...... ..+|+.           +.++|++||.+++.
T Consensus       117 -----~~~~~~D~I~~~~-----~-----------------l~~~~~~-~~~l~~-----------~~~~L~~gG~li~~  157 (239)
T PRK00216        117 -----FPDNSFDAVTIAF-----G-----------------LRNVPDI-DKALRE-----------MYRVLKPGGRLVIL  157 (239)
T ss_pred             -----CCCCCccEEEEec-----c-----------------cccCCCH-HHHHHH-----------HHHhccCCcEEEEE
Confidence                 2346799998621     0                 0001111 456777           88999999999887


Q ss_pred             ecC
Q psy17793        236 TCS  238 (397)
Q Consensus       236 TCS  238 (397)
                      +-+
T Consensus       158 ~~~  160 (239)
T PRK00216        158 EFS  160 (239)
T ss_pred             Eec
Confidence            544

>TIGR00740 methyltransferase, putative

Probab=99.03  E-value=3.4e-09  Score=100.35  Aligned_cols=107  Identities=18%  Similarity=0.277  Sum_probs=81.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhh
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      .++.+|||+|||+|..+..++..+. +..+|+++|+|+.+++.++++++..+. .+++++.+|+..+.           +
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~  120 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-----------I  120 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----------C
Confidence            5778999999999999999988753 468999999999999999999988764 36899999987652           2


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHH-HHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA-NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~-~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                        ..+|.|++.-.                      +..+. ....+++++           +.+.|||||.++.+.
T Consensus       121 --~~~d~v~~~~~----------------------l~~~~~~~~~~~l~~-----------i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       121 --KNASMVILNFT----------------------LQFLPPEDRIALLTK-----------IYEGLNPNGVLVLSE  161 (239)
T ss_pred             --CCCCEEeeecc----------------------hhhCCHHHHHHHHHH-----------HHHhcCCCeEEEEee
Confidence              35898875211                      01111 112567888           999999999999874

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.01  E-value=3.2e-09  Score=103.54  Aligned_cols=104  Identities=21%  Similarity=0.238  Sum_probs=78.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..+..+|..   +.+|+|+|+|+.+++.++++++..++ ++++...|+....            ..
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~------------~~  182 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSAS------------IQ  182 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhccc------------cc
Confidence            34459999999999999999883   47999999999999999999999988 7888888876542            24


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      ++||+|++....                   ..+ . .+....++++           +.++|||||++++.
T Consensus       183 ~~fD~I~~~~vl-------------------~~l-~-~~~~~~~l~~-----------~~~~LkpgG~~l~v  222 (287)
T PRK12335        183 EEYDFILSTVVL-------------------MFL-N-RERIPAIIKN-----------MQEHTNPGGYNLIV  222 (287)
T ss_pred             CCccEEEEcchh-------------------hhC-C-HHHHHHHHHH-----------HHHhcCCCcEEEEE
Confidence            689999973210                   000 0 0112567777           88999999996653

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.98  E-value=6.9e-09  Score=96.05  Aligned_cols=114  Identities=25%  Similarity=0.305  Sum_probs=83.8

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ...+...++.+|||+|||+|..+..++......++++++|+++..++.++++..  ...++.+...|+....        
T Consensus        32 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~--------  101 (223)
T TIGR01934        32 VKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALP--------  101 (223)
T ss_pred             HHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCC--------
Confidence            334445578899999999999999999876433689999999999999998876  3346888888887652        


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                         +..+.||+|++.-   +  .      .           ..... ..+|++           +.++|+|||+++..+.
T Consensus       102 ---~~~~~~D~i~~~~---~--~------~-----------~~~~~-~~~l~~-----------~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934       102 ---FEDNSFDAVTIAF---G--L------R-----------NVTDI-QKALRE-----------MYRVLKPGGRLVILEF  144 (223)
T ss_pred             ---CCCCcEEEEEEee---e--e------C-----------CcccH-HHHHHH-----------HHHHcCCCcEEEEEEe
Confidence               2346799998621   0  0      0           00111 456777           8899999999998765


Q ss_pred             C
Q psy17793        238 S  238 (397)
Q Consensus       238 S  238 (397)
                      +
T Consensus       145 ~  145 (223)
T TIGR01934       145 S  145 (223)
T ss_pred             c
Confidence            5

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK04457 spermidine synthase; Provisional

Probab=98.97  E-value=1e-08  Score=98.85  Aligned_cols=132  Identities=14%  Similarity=0.137  Sum_probs=92.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ..++.+|||+|+|.|..+..++... +..+|+++|+|+..++.+++++...+. ++++++.+|+..+...          
T Consensus        64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~----------  132 (262)
T PRK04457         64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV----------  132 (262)
T ss_pred             CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh----------
Confidence            3456789999999999999898875 567999999999999999998765543 5799999999876421          


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV  241 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~  241 (397)
                      ..++||+|++|+- .+.+. |            ..+     ...++++.           +.+.|+|||+++....+-. 
T Consensus       133 ~~~~yD~I~~D~~-~~~~~-~------------~~l-----~t~efl~~-----------~~~~L~pgGvlvin~~~~~-  181 (262)
T PRK04457        133 HRHSTDVILVDGF-DGEGI-I------------DAL-----CTQPFFDD-----------CRNALSSDGIFVVNLWSRD-  181 (262)
T ss_pred             CCCCCCEEEEeCC-CCCCC-c------------ccc-----CcHHHHHH-----------HHHhcCCCcEEEEEcCCCc-
Confidence            2357999999963 22111 0            100     01566777           8899999999998644322 


Q ss_pred             cccHHHHHHHHHHCC
Q psy17793        242 EENEAVIAWILHRHP  256 (397)
Q Consensus       242 eEnE~vV~~~L~~~~  256 (397)
                      ....+.++.+-+.++
T Consensus       182 ~~~~~~l~~l~~~F~  196 (262)
T PRK04457        182 KRYDRYLERLESSFE  196 (262)
T ss_pred             hhHHHHHHHHHHhcC
Confidence            223445555544454

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=9.9e-09  Score=94.67  Aligned_cols=133  Identities=23%  Similarity=0.231  Sum_probs=87.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .++|..|+|+||+||+++..++..++.++.|+|+|+.|-.           -+.+|.++.+|++.-...  .+. ...+.
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~--~~l-~~~l~  108 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTL--EKL-LEALG  108 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHH--HHH-HHHcC
Confidence            3678999999999999999999999888899999998754           245689999999865311  010 01123


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE  242 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e  242 (397)
                      ...+|+|++|+-       |+..-.++    -...     .+..+...|+.|       |...|++||.++..  .+..+
T Consensus       109 ~~~~DvV~sD~a-------p~~~g~~~----~Dh~-----r~~~L~~~a~~~-------a~~vL~~~G~fv~K--~fqg~  163 (205)
T COG0293         109 GAPVDVVLSDMA-------PNTSGNRS----VDHA-----RSMYLCELALEF-------ALEVLKPGGSFVAK--VFQGE  163 (205)
T ss_pred             CCCcceEEecCC-------CCcCCCcc----ccHH-----HHHHHHHHHHHH-------HHHeeCCCCeEEEE--EEeCC
Confidence            345799999985       33333333    1111     123344445555       88999999999986  34444


Q ss_pred             ccHHHHHHHHHHC
Q psy17793        243 ENEAVIAWILHRH  255 (397)
Q Consensus       243 EnE~vV~~~L~~~  255 (397)
                      +.+ .+.+.++++
T Consensus       164 ~~~-~~l~~~~~~  175 (205)
T COG0293         164 DFE-DLLKALRRL  175 (205)
T ss_pred             CHH-HHHHHHHHh
Confidence            444 444445443

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.97  E-value=3.5e-09  Score=104.94  Aligned_cols=101  Identities=28%  Similarity=0.392  Sum_probs=83.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .+|++|+||+||-|.+|+.+|..  +..+|+|+|+||.+++.|++|++.+++.+ |+.+++|++....           .
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~--g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~-----------~  253 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKK--GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP-----------E  253 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhc--CCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh-----------c
Confidence            56999999999999999999985  44459999999999999999999999988 8999999988741           2


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      .+.+|+|++.-|=+                           +.+.+..           |.+++++||.+.|-
T Consensus       254 ~~~aDrIim~~p~~---------------------------a~~fl~~-----------A~~~~k~~g~iHyy  288 (341)
T COG2520         254 LGVADRIIMGLPKS---------------------------AHEFLPL-----------ALELLKDGGIIHYY  288 (341)
T ss_pred             cccCCEEEeCCCCc---------------------------chhhHHH-----------HHHHhhcCcEEEEE
Confidence            26799999977611                           1334455           88899999998775

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.96  E-value=5.7e-09  Score=97.52  Aligned_cols=104  Identities=22%  Similarity=0.231  Sum_probs=81.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhcccC
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQKES  165 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~~~  165 (397)
                      ++|||+|||+|+.+..+++.. +..+|+++|+|+..++.++++++..|+. ++++...|.....           + .++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-----------~-~~~   67 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-----------F-PDT   67 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-----------C-CCC
Confidence            379999999999999998875 3578999999999999999999998875 4888888875432           2 357


Q ss_pred             ccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        166 FDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       166 fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                      ||+|++                      ...+..... ...++++           +.++|||||.++.++.
T Consensus        68 fD~I~~----------------------~~~l~~~~~-~~~~l~~-----------~~~~LkpgG~l~i~~~  105 (224)
T smart00828       68 YDLVFG----------------------FEVIHHIKD-KMDLFSN-----------ISRHLKDGGHLVLADF  105 (224)
T ss_pred             CCEeeh----------------------HHHHHhCCC-HHHHHHH-----------HHHHcCCCCEEEEEEc
Confidence            999985                      222332222 2677888           9999999999998753

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.96  E-value=1.9e-09  Score=96.33  Aligned_cols=81  Identities=21%  Similarity=0.274  Sum_probs=59.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhcccC
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQKES  165 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~~~  165 (397)
                      +.|+|+|||.||-|+++|..   ..+|+|+|+|+.+++.++.|++-+|+. +|.++++|+.+....         .....
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~---~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~---------~~~~~   68 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFART---FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR---------LKSNK   68 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHT---T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG---------B----
T ss_pred             CEEEEeccCcCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh---------ccccc
Confidence            36999999999999999995   458999999999999999999999975 699999999886422         11122


Q ss_pred             -ccEEEEcCCCCCCC
Q psy17793        166 -FDRILLDAPCSGFG  179 (397)
Q Consensus       166 -fD~Il~DpPCSg~G  179 (397)
                       ||.|+++||--|-.
T Consensus        69 ~~D~vFlSPPWGGp~   83 (163)
T PF09445_consen   69 IFDVVFLSPPWGGPS   83 (163)
T ss_dssp             --SEEEE---BSSGG
T ss_pred             cccEEEECCCCCCcc
Confidence             89999999977644

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>TIGR00452 methyltransferase, putative

Probab=98.96  E-value=1.3e-08  Score=100.37  Aligned_cols=116  Identities=16%  Similarity=0.109  Sum_probs=79.5

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEEcccccccccchhhHHH
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      .+.+.+|++|||+|||+|..+..++..  +...|+|+|.|+.++..++..-+..+ ..++.+...|+..+.         
T Consensus       116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp---------  184 (314)
T TIGR00452       116 HLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH---------  184 (314)
T ss_pred             hcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC---------
Confidence            345678899999999999998887764  34589999999999877544333322 235677777765542         


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                        . ...||.|++.                      ..+.+.... ...|.+           +.+.|||||.|+++|..
T Consensus       185 --~-~~~FD~V~s~----------------------gvL~H~~dp-~~~L~e-----------l~r~LkpGG~Lvletl~  227 (314)
T TIGR00452       185 --E-LYAFDTVFSM----------------------GVLYHRKSP-LEHLKQ-----------LKHQLVIKGELVLETLV  227 (314)
T ss_pred             --C-CCCcCEEEEc----------------------chhhccCCH-HHHHHH-----------HHHhcCCCCEEEEEEEE
Confidence              1 2479999961                      111111112 456777           89999999999998765


Q ss_pred             CCccc
Q psy17793        239 LSVEE  243 (397)
Q Consensus       239 ~~~eE  243 (397)
                      +...+
T Consensus       228 i~g~~  232 (314)
T TIGR00452       228 IDGDL  232 (314)
T ss_pred             ecCcc
Confidence            54433

Known examples to date are restricted to the proteobacteria.

>PLN03075 nicotianamine synthase; Provisional

Probab=98.95  E-value=2.5e-09  Score=104.23  Aligned_cols=108  Identities=13%  Similarity=0.081  Sum_probs=82.4

Q ss_pred             CCCeEEEEcCCCChHHHHHH-HHcCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCc-EEEEEcccccccccchhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIA-LLMNDTGTLIALDKSKPRVTKLEETIKK-LQLSS-IQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA-~~~~~~~~V~avD~s~~rl~~l~~n~~~-~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      +.++|+|+|||||+.|..+. +...++++++++|+|+.+++.+++++++ .|+.+ |++..+|+.+...           
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-----------  191 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-----------  191 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-----------
Confidence            67899999999997765443 3445778999999999999999999965 78865 9999999976521           


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      ..+.||+|++++ +          ..|.           .+.+.++|++           ..+.|+|||.+++-+
T Consensus       192 ~l~~FDlVF~~A-L----------i~~d-----------k~~k~~vL~~-----------l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        192 SLKEYDVVFLAA-L----------VGMD-----------KEEKVKVIEH-----------LGKHMAPGALLMLRS  233 (296)
T ss_pred             ccCCcCEEEEec-c----------cccc-----------cccHHHHHHH-----------HHHhcCCCcEEEEec
Confidence            135799999963 1          1111           0122677888           899999999999974

>KOG1270|consensus

Probab=98.94  E-value=2.3e-09  Score=101.35  Aligned_cols=101  Identities=23%  Similarity=0.301  Sum_probs=77.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-CC--c----EEEEEcccccccccchhhH
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-LS--S----IQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-~~--~----v~~~~~D~~~~~~~~~~d~  156 (397)
                      ..|.+|||+|||.|..|.+||.+   +..|+|+|.++.+++.+++. +.+. ..  +    +++.+.|+...        
T Consensus        88 ~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~--------  155 (282)
T KOG1270|consen   88 LLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGL--------  155 (282)
T ss_pred             cCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhc--------
Confidence            34688999999999999999996   47999999999999999998 4432 21  1    33333443332        


Q ss_pred             HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                            .+.||.|+|                      -+.+++.... .+++..           ..++|||||+|+.+|
T Consensus       156 ------~~~fDaVvc----------------------sevleHV~dp-~~~l~~-----------l~~~lkP~G~lfitt  195 (282)
T KOG1270|consen  156 ------TGKFDAVVC----------------------SEVLEHVKDP-QEFLNC-----------LSALLKPNGRLFITT  195 (282)
T ss_pred             ------ccccceeee----------------------HHHHHHHhCH-HHHHHH-----------HHHHhCCCCceEeee
Confidence                  245999998                      4777777666 567787           899999999999994

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.93  E-value=6.7e-09  Score=103.04  Aligned_cols=112  Identities=18%  Similarity=0.135  Sum_probs=80.0

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhH
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      ...+.+.+|.+|||+|||+|..+..++..  +...|+|+|.|+.++...+...+..+. .+|.+..+|+..+.       
T Consensus       115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp-------  185 (322)
T PRK15068        115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP-------  185 (322)
T ss_pred             HHhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC-------
Confidence            33556667899999999999999988885  345799999999988765544343332 36888888887652       


Q ss_pred             HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                          + .+.||.|++    .+                  .+.+.... ..+|++           +.+.|||||.++++|
T Consensus       186 ----~-~~~FD~V~s----~~------------------vl~H~~dp-~~~L~~-----------l~~~LkpGG~lvl~~  226 (322)
T PRK15068        186 ----A-LKAFDTVFS----MG------------------VLYHRRSP-LDHLKQ-----------LKDQLVPGGELVLET  226 (322)
T ss_pred             ----C-cCCcCEEEE----CC------------------hhhccCCH-HHHHHH-----------HHHhcCCCcEEEEEE
Confidence                3 568999996    11                  11111111 456777           899999999999886


Q ss_pred             c
Q psy17793        237 C  237 (397)
Q Consensus       237 C  237 (397)
                      -
T Consensus       227 ~  227 (322)
T PRK15068        227 L  227 (322)
T ss_pred             E
Confidence            4

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.92  E-value=2.5e-08  Score=93.79  Aligned_cols=115  Identities=16%  Similarity=0.180  Sum_probs=84.0

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d  155 (397)
                      ++...+.+.++.+|||+|||+|..+..++..   ...++++|.++..++.+++++...+. ++.+...|.....      
T Consensus        39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~------  108 (233)
T PRK05134         39 YIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELA------  108 (233)
T ss_pred             HHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhh------
Confidence            4444455667889999999999999888774   35799999999999999999988776 5677777765542      


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                          ....+.||+|++.-.                      +...... ..+|+.           +.++|+|||.++.+
T Consensus       109 ----~~~~~~fD~Ii~~~~----------------------l~~~~~~-~~~l~~-----------~~~~L~~gG~l~v~  150 (233)
T PRK05134        109 ----AEHPGQFDVVTCMEM----------------------LEHVPDP-ASFVRA-----------CAKLVKPGGLVFFS  150 (233)
T ss_pred             ----hhcCCCccEEEEhhH----------------------hhccCCH-HHHHHH-----------HHHHcCCCcEEEEE
Confidence                113468999997221                      1111111 456777           88899999999998


Q ss_pred             ecC
Q psy17793        236 TCS  238 (397)
Q Consensus       236 TCS  238 (397)
                      ++.
T Consensus       151 ~~~  153 (233)
T PRK05134        151 TLN  153 (233)
T ss_pred             ecC
Confidence            764

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.91  E-value=8.4e-09  Score=98.49  Aligned_cols=126  Identities=17%  Similarity=0.200  Sum_probs=94.7

Q ss_pred             chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEccccccc
Q psy17793         71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRIN  149 (397)
Q Consensus        71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~  149 (397)
                      .....++..++....-.+||++|++.|.-|+.+|..++..++|+++|.++.+.+.+++++++.|+. +|+++.+|+...+
T Consensus        65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L  144 (247)
T PLN02589         65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL  144 (247)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence            445566666666656679999999999999999998877899999999999999999999999975 5999999997764


Q ss_pred             ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793        150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD  229 (397)
Q Consensus       150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg  229 (397)
                      .....+    ....++||.|++|+-                   +....       ..++.           +.++|++|
T Consensus       145 ~~l~~~----~~~~~~fD~iFiDad-------------------K~~Y~-------~y~~~-----------~l~ll~~G  183 (247)
T PLN02589        145 DQMIED----GKYHGTFDFIFVDAD-------------------KDNYI-------NYHKR-----------LIDLVKVG  183 (247)
T ss_pred             HHHHhc----cccCCcccEEEecCC-------------------HHHhH-------HHHHH-----------HHHhcCCC
Confidence            210000    001258999999984                   23222       23344           77899999


Q ss_pred             cEEEEEec
Q psy17793        230 GILVYCTC  237 (397)
Q Consensus       230 G~lvysTC  237 (397)
                      |.|+.-..
T Consensus       184 Gviv~DNv  191 (247)
T PLN02589        184 GVIGYDNT  191 (247)
T ss_pred             eEEEEcCC
Confidence            99987543

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.91  E-value=9.7e-09  Score=104.20  Aligned_cols=112  Identities=21%  Similarity=0.253  Sum_probs=82.0

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d  155 (397)
                      .+...+.+++|++|||+|||+|+.+.++|...  +.+|+|+|+|+.+++.++++++  ++ ++++...|...+       
T Consensus       158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l-------  225 (383)
T PRK11705        158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL-------  225 (383)
T ss_pred             HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc-------
Confidence            44556778899999999999999999998864  4689999999999999999885  33 367777776432       


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                             .++||.|++-..                   -..+. ... ...+++.           +.++|||||+++..
T Consensus       226 -------~~~fD~Ivs~~~-------------------~ehvg-~~~-~~~~l~~-----------i~r~LkpGG~lvl~  266 (383)
T PRK11705        226 -------NGQFDRIVSVGM-------------------FEHVG-PKN-YRTYFEV-----------VRRCLKPDGLFLLH  266 (383)
T ss_pred             -------CCCCCEEEEeCc-------------------hhhCC-hHH-HHHHHHH-----------HHHHcCCCcEEEEE
Confidence                   357999986221                   01110 001 1456777           89999999999987


Q ss_pred             ecC
Q psy17793        236 TCS  238 (397)
Q Consensus       236 TCS  238 (397)
                      +.+
T Consensus       267 ~i~  269 (383)
T PRK11705        267 TIG  269 (383)
T ss_pred             Ecc
Confidence            543

>PRK00811 spermidine synthase; Provisional

Probab=98.91  E-value=1.2e-08  Score=99.44  Aligned_cols=112  Identities=17%  Similarity=0.267  Sum_probs=82.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEEcccccccccchhhHHH
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-----LSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      ...++|||+|+|.|+.+..+++. .+..+|+++|+|+..++.+++.+...+     -.+++++.+|+..+..        
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~--------  145 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA--------  145 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh--------
Confidence            34579999999999999888764 245689999999999999999987653     2459999999987642        


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                        ...++||+|++|.+      .|.     .   ....+     ...++++.           +.+.|+|||+++..+
T Consensus       146 --~~~~~yDvIi~D~~------dp~-----~---~~~~l-----~t~ef~~~-----------~~~~L~~gGvlv~~~  191 (283)
T PRK00811        146 --ETENSFDVIIVDST------DPV-----G---PAEGL-----FTKEFYEN-----------CKRALKEDGIFVAQS  191 (283)
T ss_pred             --hCCCcccEEEECCC------CCC-----C---chhhh-----hHHHHHHH-----------HHHhcCCCcEEEEeC
Confidence              13468999999964      010     0   01111     12566677           888999999998753

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.91  E-value=2.9e-08  Score=91.21  Aligned_cols=115  Identities=21%  Similarity=0.216  Sum_probs=79.4

Q ss_pred             hHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc
Q psy17793         73 PSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS  152 (397)
Q Consensus        73 ~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~  152 (397)
                      -|.+. .+++.-+..++||+|||.|.-++.+|++   +-.|+|+|+|+..++.+++.+++.+++ |++...|.....   
T Consensus        19 hs~v~-~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~---   90 (192)
T PF03848_consen   19 HSEVL-EAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFD---   90 (192)
T ss_dssp             -HHHH-HHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS---
T ss_pred             cHHHH-HHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcc---
Confidence            34433 4455555679999999999999999994   678999999999999999999999886 999999987652   


Q ss_pred             hhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE
Q psy17793        153 QIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL  232 (397)
Q Consensus       153 ~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l  232 (397)
                              + .+.||.|++..-          ..   +++. ...       .+++++           ..+.++|||++
T Consensus        91 --------~-~~~yD~I~st~v----------~~---fL~~-~~~-------~~i~~~-----------m~~~~~pGG~~  129 (192)
T PF03848_consen   91 --------F-PEEYDFIVSTVV----------FM---FLQR-ELR-------PQIIEN-----------MKAATKPGGYN  129 (192)
T ss_dssp             ----------TTTEEEEEEESS----------GG---GS-G-GGH-------HHHHHH-----------HHHTEEEEEEE
T ss_pred             --------c-cCCcCEEEEEEE----------ec---cCCH-HHH-------HHHHHH-----------HHhhcCCcEEE
Confidence                    2 367999986211          00   1111 111       345555           66789999999


Q ss_pred             EEEe
Q psy17793        233 VYCT  236 (397)
Q Consensus       233 vysT  236 (397)
                      ++.|
T Consensus       130 li~~  133 (192)
T PF03848_consen  130 LIVT  133 (192)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8854

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.90  E-value=1.7e-08  Score=100.55  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=77.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..+..++... +..+|+++|.|+.+++.++++..   ..+++++.+|+....           +..
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp-----------~~~  176 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLP-----------FPT  176 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCC-----------CCC
Confidence            467899999999999998888865 34789999999999999998754   346788888886542           445


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      ++||+|++...                      +..+.+. .++|++           +.++|||||++++.
T Consensus       177 ~sFDvVIs~~~----------------------L~~~~d~-~~~L~e-----------~~rvLkPGG~LvIi  214 (340)
T PLN02490        177 DYADRYVSAGS----------------------IEYWPDP-QRGIKE-----------AYRVLKIGGKACLI  214 (340)
T ss_pred             CceeEEEEcCh----------------------hhhCCCH-HHHHHH-----------HHHhcCCCcEEEEE
Confidence            78999997321                      1111111 346778           99999999999875

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.90  E-value=1.9e-08  Score=98.90  Aligned_cols=123  Identities=11%  Similarity=0.122  Sum_probs=90.5

Q ss_pred             HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccch
Q psy17793         75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQ  153 (397)
Q Consensus        75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~  153 (397)
                      ..+...++..++.+|||+|||+|..+..+++.. +..+++++|. +..++.+++++++.|+. +|+++.+|+.+..    
T Consensus       139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~----  212 (306)
T TIGR02716       139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES----  212 (306)
T ss_pred             HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC----
Confidence            334455667788999999999999999999875 5679999997 78999999999999985 5999999987531    


Q ss_pred             hhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793        154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV  233 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv  233 (397)
                             +  ..+|.|++    +      .+...|.    ..       ...++|++           +.+.|||||+|+
T Consensus       213 -------~--~~~D~v~~----~------~~lh~~~----~~-------~~~~il~~-----------~~~~L~pgG~l~  251 (306)
T TIGR02716       213 -------Y--PEADAVLF----C------RILYSAN----EQ-------LSTIMCKK-----------AFDAMRSGGRLL  251 (306)
T ss_pred             -------C--CCCCEEEe----E------hhhhcCC----hH-------HHHHHHHH-----------HHHhcCCCCEEE
Confidence                   2  23698876    0      1112222    11       11567888           999999999998


Q ss_pred             EEecCCCcccc
Q psy17793        234 YCTCSLSVEEN  244 (397)
Q Consensus       234 ysTCS~~~eEn  244 (397)
                      .....+...++
T Consensus       252 i~d~~~~~~~~  262 (306)
T TIGR02716       252 ILDMVIDDPEN  262 (306)
T ss_pred             EEEeccCCCCC
Confidence            88654444433

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK06922 hypothetical protein; Provisional

Probab=98.90  E-value=1.9e-08  Score=106.70  Aligned_cols=124  Identities=22%  Similarity=0.262  Sum_probs=86.5

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      +++..++.+|||+|||+|..+..++... +.+.|+|+|+|+.+++.+++++...+. ++.++++|+..+..         
T Consensus       413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~---------  481 (677)
T PRK06922        413 ILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSS---------  481 (677)
T ss_pred             HhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCcc---------
Confidence            4455578899999999999998888865 567999999999999999998876653 57888899876521         


Q ss_pred             hhcccCccEEEEcCCCCCCCCCccccccc-CccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNAN-SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~-s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      .+.+++||+|++.++-          ..+ ++... .....-.....++|++           +.+.|||||+++...
T Consensus       482 ~fedeSFDvVVsn~vL----------H~L~syIp~-~g~~f~~edl~kiLre-----------I~RVLKPGGrLII~D  537 (677)
T PRK06922        482 SFEKESVDTIVYSSIL----------HELFSYIEY-EGKKFNHEVIKKGLQS-----------AYEVLKPGGRIIIRD  537 (677)
T ss_pred             ccCCCCEEEEEEchHH----------Hhhhhhccc-ccccccHHHHHHHHHH-----------HHHHcCCCcEEEEEe
Confidence            1455789999985531          000 00000 0000000122677888           999999999999874

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.90  E-value=1.6e-08  Score=93.37  Aligned_cols=138  Identities=21%  Similarity=0.278  Sum_probs=95.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF  166 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f  166 (397)
                      ..+||+|||.|...+++|..- +...++|+|++..++..+.+.+.+.+++|+.++++|+..+...        -+.++++
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~--------~~~~~~v   89 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRR--------LFPPGSV   89 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHH--------HSTTTSE
T ss_pred             CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhh--------cccCCch
Confidence            389999999999999999985 5679999999999999999999999999999999999875421        1345789


Q ss_pred             cEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHH
Q psy17793        167 DRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA  246 (397)
Q Consensus       167 D~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~  246 (397)
                      |.|.+.=|      +|+.+.+..    ..++     .|..+|..           ..+.|++||.|.+.|-.   ++--+
T Consensus        90 ~~i~i~FP------DPWpK~rH~----krRl-----~~~~fl~~-----------~~~~L~~gG~l~~~TD~---~~y~~  140 (195)
T PF02390_consen   90 DRIYINFP------DPWPKKRHH----KRRL-----VNPEFLEL-----------LARVLKPGGELYFATDV---EEYAE  140 (195)
T ss_dssp             EEEEEES-----------SGGGG----GGST-----TSHHHHHH-----------HHHHEEEEEEEEEEES----HHHHH
T ss_pred             heEEEeCC------CCCcccchh----hhhc-----CCchHHHH-----------HHHHcCCCCEEEEEeCC---HHHHH
Confidence            99999777      344332222    1111     33667777           88899999999988644   22222


Q ss_pred             HHHHHHHH-CCCcEEEe
Q psy17793        247 VIAWILHR-HPEVELVQ  262 (397)
Q Consensus       247 vV~~~L~~-~~~~~l~~  262 (397)
                      .+...++. ++.++...
T Consensus       141 ~~~~~~~~~~~~f~~~~  157 (195)
T PF02390_consen  141 WMLEQFEESHPGFENIE  157 (195)
T ss_dssp             HHHHHHHHHSTTEEEE-
T ss_pred             HHHHHHHhcCcCeEEcc
Confidence            23333444 56777764

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.89  E-value=2.9e-10  Score=92.57  Aligned_cols=99  Identities=21%  Similarity=0.294  Sum_probs=61.9

Q ss_pred             EEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEE
Q psy17793         90 LDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRI  169 (397)
Q Consensus        90 LDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~I  169 (397)
                      ||+|||+|..+..+++.. +..+++++|+|+.+++.+++++...+..+......+.......         ...++||.|
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~fD~V   70 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY---------DPPESFDLV   70 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C---------CC----SEE
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc---------cccccccee
Confidence            799999999999999976 5789999999999999999999998866655555554443211         122589999


Q ss_pred             EEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE
Q psy17793        170 LLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL  232 (397)
Q Consensus       170 l~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l  232 (397)
                      ++-                      ..+..+... ..+|++           +.++|||||.|
T Consensus        71 ~~~----------------------~vl~~l~~~-~~~l~~-----------~~~~L~pgG~l   99 (99)
T PF08242_consen   71 VAS----------------------NVLHHLEDI-EAVLRN-----------IYRLLKPGGIL   99 (99)
T ss_dssp             EEE-----------------------TTS--S-H-HHHHHH-----------HTTT-TSS-EE
T ss_pred             hhh----------------------hhHhhhhhH-HHHHHH-----------HHHHcCCCCCC
Confidence            971                      111112222 577888           99999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.89  E-value=2e-09  Score=105.88  Aligned_cols=167  Identities=14%  Similarity=0.102  Sum_probs=101.8

Q ss_pred             CCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHc------CCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLM------NDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~------~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      .|.|+-...-+.+++.++.+.++++|+|.|||+|++.+.+...+      .....++|+|+++..+..++.|+...|+..
T Consensus        25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~  104 (311)
T PF02384_consen   25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN  104 (311)
T ss_dssp             CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred             cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence            46677777778888899999999999999999999998887754      246789999999999999999887776543


Q ss_pred             --EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC-Cccccc--ccCccchHHHHHHHHHHHHHHHHHHh
Q psy17793        138 --IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ-RPMFYN--ANSFLNLDKKIKSYANIQKKLLQAVY  212 (397)
Q Consensus       138 --v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~-~p~~~~--~~s~~~~~~~~~~l~~~Q~~lL~~~~  212 (397)
                        ..+...|.......         .....||.|++|||.+..+. .+....  ++........     ..+..++.+  
T Consensus       105 ~~~~i~~~d~l~~~~~---------~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Fi~~--  168 (311)
T PF02384_consen  105 SNINIIQGDSLENDKF---------IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKS-----NAEYAFIEH--  168 (311)
T ss_dssp             BGCEEEES-TTTSHSC---------TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTT-----EHHHHHHHH--
T ss_pred             cccccccccccccccc---------ccccccccccCCCCccccccccccccccccccccCCCcc-----chhhhhHHH--
Confidence              46778887654211         11468999999999887631 111111  1110000011     111336677  


Q ss_pred             hhhccccccccccccCCcEEEEEecC--CCccc-cHHHHHHHHHHC
Q psy17793        213 RFVSLFDWQGIPLLKKDGILVYCTCS--LSVEE-NEAVIAWILHRH  255 (397)
Q Consensus       213 ~f~~~~~~~a~~lLkpgG~lvysTCS--~~~eE-nE~vV~~~L~~~  255 (397)
                               +++.||+||++++..=+  +.... ...+-+++++++
T Consensus       169 ---------~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~  205 (311)
T PF02384_consen  169 ---------ALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLENG  205 (311)
T ss_dssp             ---------HHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHHE
T ss_pred             ---------HHhhcccccceeEEecchhhhccchHHHHHHHHHhhc
Confidence                     89999999997666432  22322 233445666664

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.89  E-value=1.6e-08  Score=79.95  Aligned_cols=103  Identities=22%  Similarity=0.296  Sum_probs=79.4

Q ss_pred             eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCcc
Q psy17793         88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFD  167 (397)
Q Consensus        88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD  167 (397)
                      +|+|+|||+|..+..++.  ....+++++|.++..+..+++..+..+..++++...|......          ....+||
T Consensus         1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~d   68 (107)
T cd02440           1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----------EADESFD   68 (107)
T ss_pred             CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc----------ccCCceE
Confidence            489999999999988877  3567999999999999999875555555678898888876531          1346799


Q ss_pred             EEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        168 RILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       168 ~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      +|+++++|...                      ......+++.           +.+.|++||.++++
T Consensus        69 ~i~~~~~~~~~----------------------~~~~~~~l~~-----------~~~~l~~~g~~~~~  103 (107)
T cd02440          69 VIISDPPLHHL----------------------VEDLARFLEE-----------ARRLLKPGGVLVLT  103 (107)
T ss_pred             EEEEccceeeh----------------------hhHHHHHHHH-----------HHHHcCCCCEEEEE
Confidence            99999986431                      1223566777           88889999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.88  E-value=8.2e-09  Score=96.40  Aligned_cols=102  Identities=22%  Similarity=0.310  Sum_probs=77.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      .+.+|||+|||+|..+..++... ...+++++|+++.+++.+++++.    .++.++..|+....           +..+
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~-----------~~~~   97 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLP-----------LEDS   97 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCC-----------CCCC
Confidence            34689999999999999999875 45679999999999998887654    36788888886552           3456


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      +||+|+++-.                      +...... .++|.+           +.++|||||.+++++
T Consensus        98 ~fD~vi~~~~----------------------l~~~~~~-~~~l~~-----------~~~~L~~~G~l~~~~  135 (240)
T TIGR02072        98 SFDLIVSNLA----------------------LQWCDDL-SQALSE-----------LARVLKPGGLLAFST  135 (240)
T ss_pred             ceeEEEEhhh----------------------hhhccCH-HHHHHH-----------HHHHcCCCcEEEEEe
Confidence            8999997332                      1111111 457777           899999999999874

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.88  E-value=1e-08  Score=92.13  Aligned_cols=82  Identities=15%  Similarity=0.227  Sum_probs=68.8

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      +..+++.++++|||+|||+|..|..+++.   ..+|+|+|+|+.+++.+++++..  ..+++++.+|+.++.        
T Consensus         6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~--------   72 (169)
T smart00650        6 VRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFD--------   72 (169)
T ss_pred             HHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCC--------
Confidence            44566788899999999999999999885   46899999999999999998865  357999999998763        


Q ss_pred             HhhhcccCccEEEEcCCC
Q psy17793        158 RMKLQKESFDRILLDAPC  175 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPC  175 (397)
                         +....||.|+.|+|+
T Consensus        73 ---~~~~~~d~vi~n~Py   87 (169)
T smart00650       73 ---LPKLQPYKVVGNLPY   87 (169)
T ss_pred             ---ccccCCCEEEECCCc
Confidence               233469999999994

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.87  E-value=1.7e-09  Score=100.52  Aligned_cols=115  Identities=23%  Similarity=0.325  Sum_probs=84.5

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEEcccccccccchhhH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS--SIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~--~v~~~~~D~~~~~~~~~~d~  156 (397)
                      ....++.|++|||.|.|-|..++..++.  +..+|+.+|+|+.-++.++-|=-.-++.  .|+++.+|+.....+     
T Consensus       128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~-----  200 (287)
T COG2521         128 ELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD-----  200 (287)
T ss_pred             heeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc-----
Confidence            4556788999999999999999877763  5559999999999998876554322322  479999999877533     


Q ss_pred             HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                          +.+++||.|+-|||-.            |   +...+  ++   .++-++           ..++||+||+++--
T Consensus       201 ----~~D~sfDaIiHDPPRf------------S---~AgeL--Ys---eefY~E-----------l~RiLkrgGrlFHY  244 (287)
T COG2521         201 ----FDDESFDAIIHDPPRF------------S---LAGEL--YS---EEFYRE-----------LYRILKRGGRLFHY  244 (287)
T ss_pred             ----CCccccceEeeCCCcc------------c---hhhhH--hH---HHHHHH-----------HHHHcCcCCcEEEE
Confidence                6778999999999921            1   11222  11   455566           78899999998643

>TIGR00417 speE spermidine synthase

Probab=98.85  E-value=2.1e-08  Score=97.02  Aligned_cols=113  Identities=17%  Similarity=0.235  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEEcccccccccchhhHHHhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ----LSSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g----~~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      ..++||++|+|.|+.+..++... ...+|+++|+|+..++.+++++...+    -.++++...|+......         
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~---------  141 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD---------  141 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh---------
Confidence            34599999999999888777643 35689999999999999999886653    24588888888765321         


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                       ..++||+|++|++-. .+.             ...+     ...+.++.           +.++|+|||+++..+++
T Consensus       142 -~~~~yDvIi~D~~~~-~~~-------------~~~l-----~~~ef~~~-----------~~~~L~pgG~lv~~~~~  188 (270)
T TIGR00417       142 -TENTFDVIIVDSTDP-VGP-------------AETL-----FTKEFYEL-----------LKKALNEDGIFVAQSES  188 (270)
T ss_pred             -CCCCccEEEEeCCCC-CCc-------------ccch-----hHHHHHHH-----------HHHHhCCCcEEEEcCCC
Confidence             246899999998621 110             0111     11455666           88899999999998665

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.85  E-value=1.3e-08  Score=93.16  Aligned_cols=121  Identities=17%  Similarity=0.141  Sum_probs=82.8

Q ss_pred             EEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccc
Q psy17793         68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR  147 (397)
Q Consensus        68 ~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~  147 (397)
                      |=|.+-.+++...|.-..-.++||+|||.|..|.+||.+.   .+++|+|+++.+++.+++++..  ..+|++...|...
T Consensus        26 YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~  100 (201)
T PF05401_consen   26 YERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPHVEWIQADVPE  100 (201)
T ss_dssp             HHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT
T ss_pred             HHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCC
Confidence            3454444444445655566799999999999999999863   6899999999999999999874  4789999999976


Q ss_pred             ccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793        148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK  227 (397)
Q Consensus       148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk  227 (397)
                      .            .+.+.||+|++          .++.+-++   -...+       +.+++.           ....|+
T Consensus       101 ~------------~P~~~FDLIV~----------SEVlYYL~---~~~~L-------~~~l~~-----------l~~~L~  137 (201)
T PF05401_consen  101 F------------WPEGRFDLIVL----------SEVLYYLD---DAEDL-------RAALDR-----------LVAALA  137 (201)
T ss_dssp             ---------------SS-EEEEEE----------ES-GGGSS---SHHHH-------HHHHHH-----------HHHTEE
T ss_pred             C------------CCCCCeeEEEE----------ehHhHcCC---CHHHH-------HHHHHH-----------HHHHhC
Confidence            5            35689999997          22333332   01222       445666           788999


Q ss_pred             CCcEEEEEe
Q psy17793        228 KDGILVYCT  236 (397)
Q Consensus       228 pgG~lvysT  236 (397)
                      |||.||..+
T Consensus       138 pgG~LV~g~  146 (201)
T PF05401_consen  138 PGGHLVFGH  146 (201)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCEEEEEE
Confidence            999999975

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.83  E-value=8e-09  Score=93.64  Aligned_cols=136  Identities=26%  Similarity=0.259  Sum_probs=77.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh--
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL--  161 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~--  161 (397)
                      ..+.+|||+||||||+|..++...+..++|+|+|+.+.           ....++..+.+|.+......  ... ...  
T Consensus        22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~--~i~-~~~~~   87 (181)
T PF01728_consen   22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIK--DIR-KLLPE   87 (181)
T ss_dssp             TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSH--HGG-GSHGT
T ss_pred             ccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHH--hhh-hhccc
Confidence            34589999999999999999887655789999999876           23356777778876542110  000 001  


Q ss_pred             cccCccEEEEcC--CCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        162 QKESFDRILLDA--PCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       162 ~~~~fD~Il~Dp--PCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                      ..+.||+|++|.  +|+|..         .    ...     ..+.+++..++.+       |.++||+||.+|.-+-. 
T Consensus        88 ~~~~~dlv~~D~~~~~~g~~---------~----~d~-----~~~~~l~~~~l~~-------a~~~L~~gG~~v~K~~~-  141 (181)
T PF01728_consen   88 SGEKFDLVLSDMAPNVSGDR---------N----IDE-----FISIRLILSQLLL-------ALELLKPGGTFVIKVFK-  141 (181)
T ss_dssp             TTCSESEEEE-------SSH---------H----SSH-----HHHHHHHHHHHHH-------HHHHHCTTEEEEEEESS-
T ss_pred             cccCcceeccccccCCCCch---------h----hHH-----HHHHHHHHHHHHH-------HHhhhcCCCEEEEEecc-
Confidence            125899999998  444320         0    011     1112223332332       88899999999887443 


Q ss_pred             CccccHHHHHHHHHHCCCcEE
Q psy17793        240 SVEENEAVIAWILHRHPEVEL  260 (397)
Q Consensus       240 ~~eEnE~vV~~~L~~~~~~~l  260 (397)
                       ..+.++++..+-..+..+.+
T Consensus       142 -~~~~~~~~~~l~~~F~~v~~  161 (181)
T PF01728_consen  142 -GPEIEELIYLLKRCFSKVKI  161 (181)
T ss_dssp             -STTSHHHHHHHHHHHHHEEE
T ss_pred             -CccHHHHHHHHHhCCeEEEE
Confidence             33334555544444333333

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.82  E-value=3.7e-08  Score=91.83  Aligned_cols=108  Identities=22%  Similarity=0.270  Sum_probs=82.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      ..+.+|||+|||+|..+..++..   ...++++|.++.+++.+++++...+..++.+...|+......          ..
T Consensus        44 ~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~----------~~  110 (224)
T TIGR01983        44 LFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK----------GA  110 (224)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC----------CC
Confidence            34789999999999999888774   356999999999999999999988876788888887655311          23


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      ++||+|++.                      ..+...... ..+|+.           +.++|++||.++.+++.
T Consensus       111 ~~~D~i~~~----------------------~~l~~~~~~-~~~l~~-----------~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983       111 KSFDVVTCM----------------------EVLEHVPDP-QAFIRA-----------CAQLLKPGGILFFSTIN  151 (224)
T ss_pred             CCccEEEeh----------------------hHHHhCCCH-HHHHHH-----------HHHhcCCCcEEEEEecC
Confidence            689999972                      122222222 467777           88999999999988764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.82  E-value=7.1e-08  Score=95.40  Aligned_cols=87  Identities=18%  Similarity=0.208  Sum_probs=65.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCc-EEEEE-cccccccccchhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL-QLSS-IQTHV-YDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~-g~~~-v~~~~-~D~~~~~~~~~~d~~~~~~  161 (397)
                      .+.++||+|||+|.....++... .+.+++|+|+|+.+++.+++|++++ ++.+ |++.. .|...+...       ...
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~-------i~~  185 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKG-------IIH  185 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhc-------ccc
Confidence            46799999999999998888765 3579999999999999999999999 7864 77654 333332110       001


Q ss_pred             cccCccEEEEcCCCCCCC
Q psy17793        162 QKESFDRILLDAPCSGFG  179 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G  179 (397)
                      ..+.||.|++|||+-.++
T Consensus       186 ~~~~fDlivcNPPf~~s~  203 (321)
T PRK11727        186 KNERFDATLCNPPFHASA  203 (321)
T ss_pred             cCCceEEEEeCCCCcCcc
Confidence            246899999999986654

>KOG1663|consensus

Probab=98.81  E-value=4.3e-08  Score=91.26  Aligned_cols=127  Identities=13%  Similarity=0.148  Sum_probs=100.6

Q ss_pred             EEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccc
Q psy17793         68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDST  146 (397)
Q Consensus        68 ~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~  146 (397)
                      .+-+...++...++..-...++||+|..+|.-++..|..+..+|+|+++|+++...+...+..++.|+.. |.++.+++.
T Consensus        56 ~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~  135 (237)
T KOG1663|consen   56 LVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL  135 (237)
T ss_pred             ecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchh
Confidence            3445566777777777777899999999999999999999999999999999999999999999999865 999999987


Q ss_pred             cccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q psy17793        147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLL  226 (397)
Q Consensus       147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lL  226 (397)
                      ..+...     ......+.||.+++|+-                   +....       ...++           ++++|
T Consensus       136 esLd~l-----~~~~~~~tfDfaFvDad-------------------K~nY~-------~y~e~-----------~l~Ll  173 (237)
T KOG1663|consen  136 ESLDEL-----LADGESGTFDFAFVDAD-------------------KDNYS-------NYYER-----------LLRLL  173 (237)
T ss_pred             hhHHHH-----HhcCCCCceeEEEEccc-------------------hHHHH-------HHHHH-----------HHhhc
Confidence            664221     12235578999999884                   12221       33455           88999


Q ss_pred             cCCcEEEEEe
Q psy17793        227 KKDGILVYCT  236 (397)
Q Consensus       227 kpgG~lvysT  236 (397)
                      |+||.|++-.
T Consensus       174 r~GGvi~~DN  183 (237)
T KOG1663|consen  174 RVGGVIVVDN  183 (237)
T ss_pred             ccccEEEEec
Confidence            9999999964

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.81  E-value=1.1e-07  Score=93.20  Aligned_cols=92  Identities=17%  Similarity=0.209  Sum_probs=75.0

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      .+|.+++|+.++|+.+|-||.|..++..+++ ++|+|+|.|+.+++.++++++.++ .++.++.+++.++...      .
T Consensus        14 ~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~------l   85 (305)
T TIGR00006        14 EGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEH------L   85 (305)
T ss_pred             HhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHH------H
Confidence            4567889999999999999999999998754 999999999999999999998764 5689999988776311      0


Q ss_pred             hhhcccCccEEEEcCCCCCC
Q psy17793        159 MKLQKESFDRILLDAPCSGF  178 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~  178 (397)
                      ......++|.|++|-=+|+.
T Consensus        86 ~~~~~~~vDgIl~DLGvSS~  105 (305)
T TIGR00006        86 DELLVTKIDGILVDLGVSSP  105 (305)
T ss_pred             HhcCCCcccEEEEeccCCHh
Confidence            11122579999999999885

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG1271|consensus

Probab=98.80  E-value=1.9e-08  Score=90.38  Aligned_cols=118  Identities=24%  Similarity=0.270  Sum_probs=85.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcccC
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKES  165 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~  165 (397)
                      ++|||+|||.|.....|+.. +=.+.++++|.|+.+++.++..+++.+++| |++...|.+...           +..+.
T Consensus        69 ~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~-----------~~~~q  136 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD-----------FLSGQ  136 (227)
T ss_pred             cceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc-----------ccccc
Confidence            49999999999999999885 234669999999999999999999999998 999999987641           45567


Q ss_pred             ccEEEE----cCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793        166 FDRILL----DAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV  241 (397)
Q Consensus       166 fD~Il~----DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~  241 (397)
                      ||+|+=    ||=    +..|+..        ..++.-       -+..           .-++|+|||++|+.+|-+..
T Consensus       137 fdlvlDKGT~DAi----sLs~d~~--------~~r~~~-------Y~d~-----------v~~ll~~~gifvItSCN~T~  186 (227)
T KOG1271|consen  137 FDLVLDKGTLDAI----SLSPDGP--------VGRLVV-------YLDS-----------VEKLLSPGGIFVITSCNFTK  186 (227)
T ss_pred             eeEEeecCceeee----ecCCCCc--------ccceee-------ehhh-----------HhhccCCCcEEEEEecCccH
Confidence            888762    221    0111110        111111       1222           66789999999999998876


Q ss_pred             cccHH
Q psy17793        242 EENEA  246 (397)
Q Consensus       242 eEnE~  246 (397)
                      .|-.+
T Consensus       187 dELv~  191 (227)
T KOG1271|consen  187 DELVE  191 (227)
T ss_pred             HHHHH
Confidence            65443

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.79  E-value=8.1e-08  Score=89.67  Aligned_cols=72  Identities=19%  Similarity=0.215  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ..++.+|||+|||+|..+..++..   ..+|+|+|+|+.+++.+++++...+. .++.+...|+...             
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-------------  116 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL-------------  116 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC-------------
Confidence            456889999999999999999874   45899999999999999999988876 4688988887654             


Q ss_pred             cccCccEEEE
Q psy17793        162 QKESFDRILL  171 (397)
Q Consensus       162 ~~~~fD~Il~  171 (397)
                      . ++||+|++
T Consensus       117 ~-~~fD~ii~  125 (219)
T TIGR02021       117 C-GEFDIVVC  125 (219)
T ss_pred             C-CCcCEEEE
Confidence            2 57999986

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.76  E-value=3.1e-08  Score=93.41  Aligned_cols=115  Identities=23%  Similarity=0.329  Sum_probs=93.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc-cC
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK-ES  165 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~-~~  165 (397)
                      ..+||+|||.|...+++|.. ++..-++|+|+....+..+.+.+.+.+++|+.+++.|+..+...         +.+ ++
T Consensus        50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~---------~~~~~s  119 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDY---------LIPDGS  119 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHh---------cCCCCC
Confidence            48999999999999999997 46678999999999999999999999999999999999887532         333 48


Q ss_pred             ccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        166 FDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       166 fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                      .|.|.++=|      +|+...+-.    +.++     .|..+|+.           ..+.||+||.|.+.|-
T Consensus       120 l~~I~i~FP------DPWpKkRH~----KRRl-----~~~~fl~~-----------~a~~Lk~gG~l~~aTD  165 (227)
T COG0220         120 LDKIYINFP------DPWPKKRHH----KRRL-----TQPEFLKL-----------YARKLKPGGVLHFATD  165 (227)
T ss_pred             eeEEEEECC------CCCCCcccc----cccc-----CCHHHHHH-----------HHHHccCCCEEEEEec
Confidence            999999877      355443322    1222     45777777           8899999999999854

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.75  E-value=4.1e-08  Score=96.16  Aligned_cols=98  Identities=18%  Similarity=0.220  Sum_probs=78.3

Q ss_pred             CcEEEech-hHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEE
Q psy17793         65 SMGILQNL-PSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHV  142 (397)
Q Consensus        65 g~~~~Qd~-~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~  142 (397)
                      |..++.|+ ....++..+.+.+++.|||+|||+|..|..++..   ..+|+|+|+|+.+++.++++++..+ ..+++++.
T Consensus        15 GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~   91 (294)
T PTZ00338         15 GQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIE   91 (294)
T ss_pred             CccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            33344443 3345566677889999999999999999999885   4689999999999999999998877 46799999


Q ss_pred             cccccccccchhhHHHhhhcccCccEEEEcCCCCCC
Q psy17793        143 YDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF  178 (397)
Q Consensus       143 ~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~  178 (397)
                      +|+....           +  ..||.|+.|+|+.-+
T Consensus        92 ~Dal~~~-----------~--~~~d~VvaNlPY~Is  114 (294)
T PTZ00338         92 GDALKTE-----------F--PYFDVCVANVPYQIS  114 (294)
T ss_pred             CCHhhhc-----------c--cccCEEEecCCcccC
Confidence            9997652           1  368999999998654

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.74  E-value=1e-07  Score=99.21  Aligned_cols=119  Identities=22%  Similarity=0.212  Sum_probs=83.6

Q ss_pred             HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh
Q psy17793         75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI  154 (397)
Q Consensus        75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~  154 (397)
                      ..+...+...++.+|||+|||+|..+..++..   ..+|+|+|+++.+++.+++...  ...++.+++.|+....     
T Consensus        27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~-----   96 (475)
T PLN02336         27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPD-----   96 (475)
T ss_pred             hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccc-----
Confidence            44445666667889999999999999999985   3589999999999987654211  2357899999986431     


Q ss_pred             hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793        155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY  234 (397)
Q Consensus       155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy  234 (397)
                          .+++.++||+|+++.++.          ...    ...       ..++|.+           +.++|||||++++
T Consensus        97 ----~~~~~~~fD~I~~~~~l~----------~l~----~~~-------~~~~l~~-----------~~r~Lk~gG~l~~  140 (475)
T PLN02336         97 ----LNISDGSVDLIFSNWLLM----------YLS----DKE-------VENLAER-----------MVKWLKVGGYIFF  140 (475)
T ss_pred             ----cCCCCCCEEEEehhhhHH----------hCC----HHH-------HHHHHHH-----------HHHhcCCCeEEEE
Confidence                124557899999854410          001    111       1567777           8899999999988


Q ss_pred             EecCC
Q psy17793        235 CTCSL  239 (397)
Q Consensus       235 sTCS~  239 (397)
                      ...++
T Consensus       141 ~d~~~  145 (475)
T PLN02336        141 RESCF  145 (475)
T ss_pred             EeccC
Confidence            64333

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.73  E-value=5.5e-08  Score=93.91  Aligned_cols=109  Identities=17%  Similarity=0.132  Sum_probs=75.8

Q ss_pred             CCCCeEEEEcCCCCh----HHHHHHHHcCC----CcEEEEEeCCHHHHHHHHHHHHH----hC-----------------
Q psy17793         84 QPGQKVLDMCAAPGN----KLTHIALLMND----TGTLIALDKSKPRVTKLEETIKK----LQ-----------------  134 (397)
Q Consensus        84 ~~g~~VLDlcagpG~----kt~~lA~~~~~----~~~V~avD~s~~rl~~l~~n~~~----~g-----------------  134 (397)
                      .++.+|||+|||+|.    .+..+++....    ..+|+|+|+|+.+++.+++.+-.    .+                 
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            345699999999996    44455554332    46899999999999999875410    01                 


Q ss_pred             -----C-CcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHH-HHHHHH
Q psy17793        135 -----L-SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA-NIQKKL  207 (397)
Q Consensus       135 -----~-~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~-~~Q~~l  207 (397)
                           + .+|++...|+....           ...++||+|+|                      ...+..+. +.+.++
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~-----------~~~~~fD~I~c----------------------rnvl~yf~~~~~~~~  224 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAES-----------PPLGDFDLIFC----------------------RNVLIYFDEPTQRKL  224 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCC-----------CccCCCCEEEe----------------------chhHHhCCHHHHHHH
Confidence                 1 24777888876642           23568999997                      12222222 345688


Q ss_pred             HHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        208 LQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       208 L~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      +++           ..+.|+|||.|+...
T Consensus       225 l~~-----------l~~~L~pGG~L~lg~  242 (264)
T smart00138      225 LNR-----------FAEALKPGGYLFLGH  242 (264)
T ss_pred             HHH-----------HHHHhCCCeEEEEEC
Confidence            888           999999999999873

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG2915|consensus

Probab=98.73  E-value=2.4e-07  Score=88.13  Aligned_cols=99  Identities=19%  Similarity=0.267  Sum_probs=82.5

Q ss_pred             CcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEc
Q psy17793         65 SMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVY  143 (397)
Q Consensus        65 g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~  143 (397)
                      ...|.-|  ..++...|++.||.+|++.|+|+|+.+..+|..+++.|+++.+|....|.+.+.+..++.|+. |+.+..-
T Consensus        87 QI~Yt~D--ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hr  164 (314)
T KOG2915|consen   87 QILYTPD--IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHR  164 (314)
T ss_pred             eEEeccc--HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEe
Confidence            3344444  445667899999999999999999999999999999999999999999999999999999985 5888888


Q ss_pred             ccccccccchhhHHHhhhcccCccEEEEcCC
Q psy17793        144 DSTRINTSSQIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                      |.......         .....+|.|++|-|
T Consensus       165 DVc~~GF~---------~ks~~aDaVFLDlP  186 (314)
T KOG2915|consen  165 DVCGSGFL---------IKSLKADAVFLDLP  186 (314)
T ss_pred             ecccCCcc---------ccccccceEEEcCC
Confidence            87654211         12468999999998

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.71  E-value=6.4e-08  Score=93.63  Aligned_cols=72  Identities=21%  Similarity=0.266  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCC--cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDT--GTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~--~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ..+.+|||+|||+|..+..++......  ..|+|+|+|+.+++.++++     ..++.+..+|+..+.           +
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp-----------~  147 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLP-----------F  147 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCC-----------C
Confidence            455789999999999999998875432  4799999999999998764     246788888887652           4


Q ss_pred             cccCccEEEE
Q psy17793        162 QKESFDRILL  171 (397)
Q Consensus       162 ~~~~fD~Il~  171 (397)
                      ..++||.|+.
T Consensus       148 ~~~sfD~I~~  157 (272)
T PRK11088        148 ADQSLDAIIR  157 (272)
T ss_pred             cCCceeEEEE
Confidence            5678999985

>PRK03612 spermidine synthase; Provisional

Probab=98.71  E-value=1.6e-07  Score=99.06  Aligned_cols=116  Identities=19%  Similarity=0.230  Sum_probs=82.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH--HHHhC---C--CcEEEEEcccccccccchhhH
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET--IKKLQ---L--SSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n--~~~~g---~--~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      .+.++|||+|+|.|..+..+++. +...+|+++|+|++.++.++++  +...+   .  ++++++.+|+.+....     
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~-----  369 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK-----  369 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-----
Confidence            45679999999999999888763 2236999999999999999984  33221   2  4699999999876421     


Q ss_pred             HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                           ..++||+|++|+|-..   .|            . ...+  ...++++.           +.+.|||||.++..+
T Consensus       370 -----~~~~fDvIi~D~~~~~---~~------------~-~~~L--~t~ef~~~-----------~~~~L~pgG~lv~~~  415 (521)
T PRK03612        370 -----LAEKFDVIIVDLPDPS---NP------------A-LGKL--YSVEFYRL-----------LKRRLAPDGLLVVQS  415 (521)
T ss_pred             -----CCCCCCEEEEeCCCCC---Cc------------c-hhcc--chHHHHHH-----------HHHhcCCCeEEEEec
Confidence                 2468999999987211   00            0 0001  11456666           888999999999887


Q ss_pred             cCC
Q psy17793        237 CSL  239 (397)
Q Consensus       237 CS~  239 (397)
                      ++.
T Consensus       416 ~~~  418 (521)
T PRK03612        416 TSP  418 (521)
T ss_pred             CCc
Confidence            653

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.70  E-value=1.2e-07  Score=88.84  Aligned_cols=111  Identities=13%  Similarity=0.147  Sum_probs=73.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH------------HhCCCcEEEEEccccccccc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIK------------KLQLSSIQTHVYDSTRINTS  151 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~------------~~g~~~v~~~~~D~~~~~~~  151 (397)
                      .++.+|||+|||.|.-+..+|+.   +-.|+|+|+|+.+++.+.+...            +..-.+|++.++|+..+...
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~  109 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA  109 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence            46789999999999999999983   5689999999999997633110            00113588899999876311


Q ss_pred             chhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcE
Q psy17793        152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI  231 (397)
Q Consensus       152 ~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~  231 (397)
                                ..+.||.|+--.-               +.+++.      ....+.+..           ..++|||||+
T Consensus       110 ----------~~~~fD~i~D~~~---------------~~~l~~------~~R~~~~~~-----------l~~lLkpgG~  147 (213)
T TIGR03840       110 ----------DLGPVDAVYDRAA---------------LIALPE------EMRQRYAAH-----------LLALLPPGAR  147 (213)
T ss_pred             ----------cCCCcCEEEechh---------------hccCCH------HHHHHHHHH-----------HHHHcCCCCe
Confidence                      1246888874110               000101      111345666           8889999999


Q ss_pred             EEEEecCC
Q psy17793        232 LVYCTCSL  239 (397)
Q Consensus       232 lvysTCS~  239 (397)
                      +++.|-+.
T Consensus       148 ~ll~~~~~  155 (213)
T TIGR03840       148 QLLITLDY  155 (213)
T ss_pred             EEEEEEEc
Confidence            88876553

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.70  E-value=3.7e-08  Score=86.26  Aligned_cols=107  Identities=23%  Similarity=0.327  Sum_probs=72.9

Q ss_pred             HHHHHhccC-CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc
Q psy17793         74 SILAGHYLD-VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS  152 (397)
Q Consensus        74 S~l~~~~L~-~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~  152 (397)
                      +.++..++. ..++.+|||+|||.|..+..++..   +.+++++|+++.+++.          .++.....+....    
T Consensus        10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~----   72 (161)
T PF13489_consen   10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----------RNVVFDNFDAQDP----   72 (161)
T ss_dssp             HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----------TTSEEEEEECHTH----
T ss_pred             HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----------hhhhhhhhhhhhh----
Confidence            334444553 467889999999999999988774   3499999999999888          2233333332221    


Q ss_pred             hhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE
Q psy17793        153 QIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL  232 (397)
Q Consensus       153 ~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l  232 (397)
                             ....++||.|++.-                      .+..+.+. ..+|++           ..++|||||.+
T Consensus        73 -------~~~~~~fD~i~~~~----------------------~l~~~~d~-~~~l~~-----------l~~~LkpgG~l  111 (161)
T PF13489_consen   73 -------PFPDGSFDLIICND----------------------VLEHLPDP-EEFLKE-----------LSRLLKPGGYL  111 (161)
T ss_dssp             -------HCHSSSEEEEEEES----------------------SGGGSSHH-HHHHHH-----------HHHCEEEEEEE
T ss_pred             -------hccccchhhHhhHH----------------------HHhhcccH-HHHHHH-----------HHHhcCCCCEE
Confidence                   23557899999821                      11111122 567788           89999999999


Q ss_pred             EEEecC
Q psy17793        233 VYCTCS  238 (397)
Q Consensus       233 vysTCS  238 (397)
                      +.++=.
T Consensus       112 ~~~~~~  117 (161)
T PF13489_consen  112 VISDPN  117 (161)
T ss_dssp             EEEEEB
T ss_pred             EEEEcC
Confidence            998643

...

>KOG2187|consensus

Probab=98.70  E-value=2.5e-08  Score=102.00  Aligned_cols=100  Identities=19%  Similarity=0.217  Sum_probs=75.6

Q ss_pred             EechhHHH------HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEE
Q psy17793         69 LQNLPSIL------AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV  142 (397)
Q Consensus        69 ~Qd~~S~l------~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~  142 (397)
                      .|.-++.+      +.+.+....+..++|+|||+|.+++.+|.   +..+|+++|++++.++.|+.|++.+|++|.++++
T Consensus       361 FQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~---~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~  437 (534)
T KOG2187|consen  361 FQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR---GVKRVIGVEISPDAVEDAEKNAQINGISNATFIV  437 (534)
T ss_pred             hccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhc---cccceeeeecChhhcchhhhcchhcCccceeeee
Confidence            46555443      55567788889999999999999998888   4579999999999999999999999999999999


Q ss_pred             cccccccccchhhHHHhhhcccCcc-EEEEcCCCCC
Q psy17793        143 YDSTRINTSSQIDIERMKLQKESFD-RILLDAPCSG  177 (397)
Q Consensus       143 ~D~~~~~~~~~~d~~~~~~~~~~fD-~Il~DpPCSg  177 (397)
                      +-+.++....    ..+.+  .+=+ ++++|||-.|
T Consensus       438 gqaE~~~~sl----~~~~~--~~~~~v~iiDPpR~G  467 (534)
T KOG2187|consen  438 GQAEDLFPSL----LTPCC--DSETLVAIIDPPRKG  467 (534)
T ss_pred             cchhhccchh----cccCC--CCCceEEEECCCccc
Confidence            9665543210    00001  1335 8899999433

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.70  E-value=2.7e-07  Score=85.75  Aligned_cols=72  Identities=15%  Similarity=0.174  Sum_probs=57.8

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ...++.+|||+|||+|..+..++... +...++|+|+|+.+++.+++++     .++.+..+|+...            +
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~~------------~  101 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFDP------------F  101 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccCC------------C
Confidence            34567899999999999999998865 4578999999999999998764     3456777776552            3


Q ss_pred             cccCccEEEE
Q psy17793        162 QKESFDRILL  171 (397)
Q Consensus       162 ~~~~fD~Il~  171 (397)
                      ..++||+|++
T Consensus       102 ~~~sfD~V~~  111 (204)
T TIGR03587       102 KDNFFDLVLT  111 (204)
T ss_pred             CCCCEEEEEE
Confidence            5578999997

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK10742 putative methyltransferase; Provisional

Probab=98.68  E-value=1.1e-07  Score=90.16  Aligned_cols=89  Identities=13%  Similarity=0.072  Sum_probs=74.6

Q ss_pred             HHHHhccCCCCCC--eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh------CC---CcEEEEEc
Q psy17793         75 ILAGHYLDVQPGQ--KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL------QL---SSIQTHVY  143 (397)
Q Consensus        75 ~l~~~~L~~~~g~--~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~------g~---~~v~~~~~  143 (397)
                      ..++.++.+++|.  +|||++||.|.-+..+|.+   ++.|+++|.++.....+++++++.      +.   .+++++..
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~  152 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence            5667888888988  9999999999999999986   457999999999999999999996      32   56899999


Q ss_pred             ccccccccchhhHHHhhhcccCccEEEEcCCCC
Q psy17793        144 DSTRINTSSQIDIERMKLQKESFDRILLDAPCS  176 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCS  176 (397)
                      |+..++..          ....||+|.+|||+-
T Consensus       153 da~~~L~~----------~~~~fDVVYlDPMfp  175 (250)
T PRK10742        153 SSLTALTD----------ITPRPQVVYLDPMFP  175 (250)
T ss_pred             cHHHHHhh----------CCCCCcEEEECCCCC
Confidence            98877522          234799999999953

>PLN02366 spermidine synthase

Probab=98.67  E-value=2e-07  Score=91.94  Aligned_cols=112  Identities=17%  Similarity=0.283  Sum_probs=82.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC--C--CcEEEEEcccccccccchhhHHHh
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ--L--SSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g--~--~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      ...++||++|+|.|+.+..+++. .+..+|+.+|+|+..++.+++.+...+  +  ++++++.+|+......        
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~--------  160 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN--------  160 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh--------
Confidence            44679999999999999888775 334689999999999999999887642  2  3599999999876421        


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                       ...++||+|++|.+-. .|  |           ...+     ...++++.           +.+.|+|||.++.-
T Consensus       161 -~~~~~yDvIi~D~~dp-~~--~-----------~~~L-----~t~ef~~~-----------~~~~L~pgGvlv~q  205 (308)
T PLN02366        161 -APEGTYDAIIVDSSDP-VG--P-----------AQEL-----FEKPFFES-----------VARALRPGGVVCTQ  205 (308)
T ss_pred             -ccCCCCCEEEEcCCCC-CC--c-----------hhhh-----hHHHHHHH-----------HHHhcCCCcEEEEC
Confidence             1245799999997611 00  0           0111     12566777           88999999999764

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.67  E-value=1e-07  Score=91.56  Aligned_cols=85  Identities=14%  Similarity=0.214  Sum_probs=70.9

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ  153 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~  153 (397)
                      ...++..++..++++|||+|||+|..|..++..   ..+|+|+|+|+.+++.+++++..  ..+++++++|+..+.    
T Consensus        18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~----   88 (258)
T PRK14896         18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVD----   88 (258)
T ss_pred             HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCC----
Confidence            345556677888999999999999999999986   35899999999999999988865  467999999998752    


Q ss_pred             hhHHHhhhcccCccEEEEcCCCC
Q psy17793        154 IDIERMKLQKESFDRILLDAPCS  176 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~DpPCS  176 (397)
                             +  ..||.|+.|+|+.
T Consensus        89 -------~--~~~d~Vv~NlPy~  102 (258)
T PRK14896         89 -------L--PEFNKVVSNLPYQ  102 (258)
T ss_pred             -------c--hhceEEEEcCCcc
Confidence                   2  2489999999964

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.67  E-value=2.3e-07  Score=86.41  Aligned_cols=135  Identities=24%  Similarity=0.299  Sum_probs=91.7

Q ss_pred             hHHHHHhcc------CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccc
Q psy17793         73 PSILAGHYL------DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST  146 (397)
Q Consensus        73 ~S~l~~~~L------~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~  146 (397)
                      -|.|++.++      .+++|.+||-+||++|..-.|++..++..|.|+|+|.|+...+.+-+.+++-  +||..+..|++
T Consensus        55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr  132 (229)
T PF01269_consen   55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDAR  132 (229)
T ss_dssp             T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TT
T ss_pred             hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCC
Confidence            466666553      3678999999999999999999999988999999999999999988777765  68999999998


Q ss_pred             cccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q psy17793        147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLL  226 (397)
Q Consensus       147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lL  226 (397)
                      .....        ...-+.+|+|+.|..               +   +...       +-++.+           +-.+|
T Consensus       133 ~P~~Y--------~~lv~~VDvI~~DVa---------------Q---p~Qa-------~I~~~N-----------a~~fL  168 (229)
T PF01269_consen  133 HPEKY--------RMLVEMVDVIFQDVA---------------Q---PDQA-------RIAALN-----------ARHFL  168 (229)
T ss_dssp             SGGGG--------TTTS--EEEEEEE-S---------------S---TTHH-------HHHHHH-----------HHHHE
T ss_pred             ChHHh--------hcccccccEEEecCC---------------C---hHHH-------HHHHHH-----------HHhhc
Confidence            76422        112358999999876               0   1111       223444           66799


Q ss_pred             cCCcEEEEEe--cCCC-ccccHHHHHHHHH
Q psy17793        227 KKDGILVYCT--CSLS-VEENEAVIAWILH  253 (397)
Q Consensus       227 kpgG~lvysT--CS~~-~eEnE~vV~~~L~  253 (397)
                      |+||.++.+-  -|+. ..+.+++.+.-.+
T Consensus       169 k~gG~~~i~iKa~siD~t~~p~~vf~~e~~  198 (229)
T PF01269_consen  169 KPGGHLIISIKARSIDSTADPEEVFAEEVK  198 (229)
T ss_dssp             EEEEEEEEEEEHHHH-SSSSHHHHHHHHHH
T ss_pred             cCCcEEEEEEecCcccCcCCHHHHHHHHHH
Confidence            9999988764  3343 3445555544443

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PRK01581 speE spermidine synthase; Validated

Probab=98.65  E-value=1.5e-07  Score=94.13  Aligned_cols=124  Identities=18%  Similarity=0.207  Sum_probs=82.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH--HH---Hh--CCCcEEEEEcccccccccchhhHH
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET--IK---KL--QLSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n--~~---~~--g~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ...+||++|+|.|+.+..+++. .+..+|+++|+|+.+++.+++.  +.   +.  .-++++++.+|+..+...      
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~------  222 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS------  222 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh------
Confidence            3469999999999976666653 3457899999999999999962  21   21  234699999999876421      


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                          ..++||+|++|.|=      |..          .....+  ...++++.           +.+.|+|||+++...-
T Consensus       223 ----~~~~YDVIIvDl~D------P~~----------~~~~~L--yT~EFy~~-----------~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        223 ----PSSLYDVIIIDFPD------PAT----------ELLSTL--YTSELFAR-----------IATFLTEDGAFVCQSN  269 (374)
T ss_pred             ----cCCCccEEEEcCCC------ccc----------cchhhh--hHHHHHHH-----------HHHhcCCCcEEEEecC
Confidence                34679999999861      100          000111  12556666           8889999999887643


Q ss_pred             CCCccccHHHHHH
Q psy17793        238 SLSVEENEAVIAW  250 (397)
Q Consensus       238 S~~~eEnE~vV~~  250 (397)
                        ++....+++..
T Consensus       270 --sp~~~~~~~~~  280 (374)
T PRK01581        270 --SPADAPLVYWS  280 (374)
T ss_pred             --ChhhhHHHHHH
Confidence              33444444333

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.64  E-value=9.4e-07  Score=85.55  Aligned_cols=95  Identities=20%  Similarity=0.234  Sum_probs=79.0

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      +...|.++++...+|+.-|-||.+..+.+.++..++++|+|.|+.+++.++++++.++ .++.++...+.++...     
T Consensus        15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~-----   88 (314)
T COG0275          15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEA-----   88 (314)
T ss_pred             HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHH-----
Confidence            3467889999999999999999999999998888999999999999999999999987 6789988887766311     


Q ss_pred             HHhhhcccCccEEEEcCCCCCC
Q psy17793        157 ERMKLQKESFDRILLDAPCSGF  178 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg~  178 (397)
                       ......+++|.||+|-=-|+.
T Consensus        89 -l~~~~i~~vDGiL~DLGVSS~  109 (314)
T COG0275          89 -LKELGIGKVDGILLDLGVSSP  109 (314)
T ss_pred             -HHhcCCCceeEEEEeccCCcc
Confidence             111234689999999877774

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.63  E-value=1.2e-07  Score=91.99  Aligned_cols=87  Identities=15%  Similarity=0.153  Sum_probs=69.2

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ  153 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~  153 (397)
                      ...+...+++.++++|||+|||+|..|..++...   .+|+|+|+|+.+++.+++++..   ++++++.+|+..+.    
T Consensus        31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~----  100 (272)
T PRK00274         31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVD----  100 (272)
T ss_pred             HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCC----
Confidence            3445556778889999999999999999999862   3899999999999999987643   57999999998763    


Q ss_pred             hhHHHhhhcccCccEEEEcCCCCC
Q psy17793        154 IDIERMKLQKESFDRILLDAPCSG  177 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~DpPCSg  177 (397)
                             +....+|.|+.|||+.-
T Consensus       101 -------~~~~~~~~vv~NlPY~i  117 (272)
T PRK00274        101 -------LSELQPLKVVANLPYNI  117 (272)
T ss_pred             -------HHHcCcceEEEeCCccc
Confidence                   11111699999999643

>KOG3191|consensus

Probab=98.60  E-value=5.7e-07  Score=80.98  Aligned_cols=137  Identities=16%  Similarity=0.169  Sum_probs=97.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES  165 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~  165 (397)
                      .+.++++|||+|-.++.+++.+.+.....|.|+++.+++..++.++.+++. +.+++.|...-.            ..++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~l------------~~~~  110 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSGL------------RNES  110 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHhhh------------ccCC
Confidence            568999999999999999999888888999999999999999999998874 788888876542            4488


Q ss_pred             ccEEEEcCCCCCCCCCcc----cccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793        166 FDRILLDAPCSGFGQRPM----FYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV  241 (397)
Q Consensus       166 fD~Il~DpPCSg~G~~p~----~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~  241 (397)
                      +|+++.|||+--+.-.|.    +...|.     ....... .-.++|..           .-.+|.|.|.+...+|.-+ 
T Consensus       111 VDvLvfNPPYVpt~~~~i~~~~i~~a~a-----GG~~Gr~-v~d~ll~~-----------v~~iLSp~Gv~Ylv~~~~N-  172 (209)
T KOG3191|consen  111 VDVLVFNPPYVPTSDEEIGDEGIASAWA-----GGKDGRE-VTDRLLPQ-----------VPDILSPRGVFYLVALRAN-  172 (209)
T ss_pred             ccEEEECCCcCcCCcccchhHHHHHHHh-----cCcchHH-HHHHHHhh-----------hhhhcCcCceEEeeehhhc-
Confidence            999999999865432111    111121     0011111 11445555           7778999999988876522 


Q ss_pred             cccHHHHHHHHHHC
Q psy17793        242 EENEAVIAWILHRH  255 (397)
Q Consensus       242 eEnE~vV~~~L~~~  255 (397)
                        +..-|.++++..
T Consensus       173 --~p~ei~k~l~~~  184 (209)
T KOG3191|consen  173 --KPKEILKILEKK  184 (209)
T ss_pred             --CHHHHHHHHhhc
Confidence              233444577665

>TIGR03438 probable methyltransferase

Probab=98.60  E-value=8.6e-07  Score=87.15  Aligned_cols=65  Identities=9%  Similarity=0.109  Sum_probs=53.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEEcccccc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHVYDSTRI  148 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~~D~~~~  148 (397)
                      .++.+|||+|||+|.+|..+++.+....+++++|+|+.+++.+++++.... --+|..+++|+...
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~  127 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP  127 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence            467799999999999999999876435789999999999999999887643 12477789998763

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.59  E-value=1.2e-07  Score=87.52  Aligned_cols=111  Identities=17%  Similarity=0.202  Sum_probs=82.1

Q ss_pred             hhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc
Q psy17793         72 LPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS  151 (397)
Q Consensus        72 ~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~  151 (397)
                      ++.-+.++ +.+.+-.+|.|+|||||+.|..++.+- +...|+|+|.|+.|++.++++     +.++++..+|...+.  
T Consensus        18 Pa~dLla~-Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~--   88 (257)
T COG4106          18 PARDLLAR-VPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWK--   88 (257)
T ss_pred             cHHHHHhh-CCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcC--
Confidence            33444433 234566799999999999999999987 578999999999999998654     357788999998873  


Q ss_pred             chhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcE
Q psy17793        152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI  231 (397)
Q Consensus       152 ~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~  231 (397)
                                +...+|+|+.|+-           ..|-    ++        .-++|.+           .+..|.|||.
T Consensus        89 ----------p~~~~dllfaNAv-----------lqWl----pd--------H~~ll~r-----------L~~~L~Pgg~  124 (257)
T COG4106          89 ----------PEQPTDLLFANAV-----------LQWL----PD--------HPELLPR-----------LVSQLAPGGV  124 (257)
T ss_pred             ----------CCCccchhhhhhh-----------hhhc----cc--------cHHHHHH-----------HHHhhCCCce
Confidence                      4467899998653           2221    11        2455666           7778999999


Q ss_pred             EEEE
Q psy17793        232 LVYC  235 (397)
Q Consensus       232 lvys  235 (397)
                      |..-
T Consensus       125 LAVQ  128 (257)
T COG4106         125 LAVQ  128 (257)
T ss_pred             EEEE
Confidence            9875

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.59  E-value=2.9e-07  Score=84.02  Aligned_cols=87  Identities=16%  Similarity=0.238  Sum_probs=67.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ++||.+|||+|||.|....++.+.  .+...+++|++++.+..+.++    |   +.++++|+..-+         ..|+
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G---v~Viq~Dld~gL---------~~f~   72 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G---VSVIQGDLDEGL---------ADFP   72 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C---CCEEECCHHHhH---------hhCC
Confidence            467999999999999999888874  467899999999998777653    4   457888886543         2378


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHH
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA  210 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~  210 (397)
                      +++||.|++                      ...++.+... .++|++
T Consensus        73 d~sFD~VIl----------------------sqtLQ~~~~P-~~vL~E   97 (193)
T PF07021_consen   73 DQSFDYVIL----------------------SQTLQAVRRP-DEVLEE   97 (193)
T ss_pred             CCCccEEeh----------------------HhHHHhHhHH-HHHHHH
Confidence            899999997                      4555555544 677777

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>KOG1541|consensus

Probab=98.59  E-value=2.8e-07  Score=85.25  Aligned_cols=146  Identities=21%  Similarity=0.160  Sum_probs=95.8

Q ss_pred             CCcEEEechhHHHHHhccCCCC--CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         64 SSMGILQNLPSILAGHYLDVQP--GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L~~~~--g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      +....||-+-+.-+.++|+..+  ..-|||+|||+|.-+..+.+   .+-..+++|+|+.+++.+.+.  .+.   -.++
T Consensus        27 sri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~---~Gh~wiGvDiSpsML~~a~~~--e~e---gdli   98 (270)
T KOG1541|consen   27 SRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD---SGHQWIGVDISPSMLEQAVER--ELE---GDLI   98 (270)
T ss_pred             ceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc---CCceEEeecCCHHHHHHHHHh--hhh---cCee
Confidence            3456788888877778887665  56899999999988866555   345689999999999999863  221   1456


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQ  221 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~  221 (397)
                      .+|.-.-          .+|.++.||.+|.   -|.        -.|-    -....++...+++|+.-   |-+     
T Consensus        99 l~DMG~G----------lpfrpGtFDg~IS---ISA--------vQWL----cnA~~s~~~P~~Rl~~F---F~t-----  145 (270)
T KOG1541|consen   99 LCDMGEG----------LPFRPGTFDGVIS---ISA--------VQWL----CNADKSLHVPKKRLLRF---FGT-----  145 (270)
T ss_pred             eeecCCC----------CCCCCCccceEEE---eee--------eeee----cccCccccChHHHHHHH---hhh-----
Confidence            6676543          3578899999884   010        0111    00111111122333222   323     


Q ss_pred             ccccccCCcEEEEEecCCCccccHHHHHHHHHH
Q psy17793        222 GIPLLKKDGILVYCTCSLSVEENEAVIAWILHR  254 (397)
Q Consensus       222 a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~  254 (397)
                      .+..|++|++.|+-    ...||++.++.+++.
T Consensus       146 Ly~~l~rg~raV~Q----fYpen~~q~d~i~~~  174 (270)
T KOG1541|consen  146 LYSCLKRGARAVLQ----FYPENEAQIDMIMQQ  174 (270)
T ss_pred             hhhhhccCceeEEE----ecccchHHHHHHHHH
Confidence            77899999999985    457899898887765

>PRK05785 hypothetical protein; Provisional

Probab=98.57  E-value=1.8e-07  Score=88.28  Aligned_cols=66  Identities=21%  Similarity=0.223  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      ++.+|||+|||+|..+..++...  +++|+|+|.|+++++.+++..        ..+++|+..+           ++.++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~l-----------p~~d~  109 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--------DKVVGSFEAL-----------PFRDK  109 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--------ceEEechhhC-----------CCCCC
Confidence            47799999999999999998864  469999999999999987631        2356777655           25678


Q ss_pred             CccEEEE
Q psy17793        165 SFDRILL  171 (397)
Q Consensus       165 ~fD~Il~  171 (397)
                      +||+|++
T Consensus       110 sfD~v~~  116 (226)
T PRK05785        110 SFDVVMS  116 (226)
T ss_pred             CEEEEEe
Confidence            9999997

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.57  E-value=9.1e-07  Score=83.10  Aligned_cols=108  Identities=13%  Similarity=0.122  Sum_probs=73.6

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC---------------CcEEEEEcccc
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL---------------SSIQTHVYDST  146 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~---------------~~v~~~~~D~~  146 (397)
                      .+.++.+|||+|||.|.-+..+|+   .+..|+|+|+|+.+++.+.+   +.++               .+|++.++|+.
T Consensus        34 ~~~~~~rvL~~gCG~G~da~~LA~---~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~  107 (218)
T PRK13255         34 ALPAGSRVLVPLCGKSLDMLWLAE---QGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFF  107 (218)
T ss_pred             CCCCCCeEEEeCCCChHhHHHHHh---CCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECccc
Confidence            345678999999999999999998   35689999999999998642   2222               35888899988


Q ss_pred             cccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHH-HHHHHHHHHHhhhhcccccccccc
Q psy17793        147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA-NIQKKLLQAVYRFVSLFDWQGIPL  225 (397)
Q Consensus       147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~-~~Q~~lL~~~~~f~~~~~~~a~~l  225 (397)
                      .+...          ....||.|+-                      ...+..+. +...+.+..           ..++
T Consensus       108 ~l~~~----------~~~~fd~v~D----------------------~~~~~~l~~~~R~~~~~~-----------l~~l  144 (218)
T PRK13255        108 ALTAA----------DLADVDAVYD----------------------RAALIALPEEMRERYVQQ-----------LAAL  144 (218)
T ss_pred             CCCcc----------cCCCeeEEEe----------------------hHhHhhCCHHHHHHHHHH-----------HHHH
Confidence            76311          1246888873                      01111111 122455666           8889


Q ss_pred             ccCCcEEEEEecC
Q psy17793        226 LKKDGILVYCTCS  238 (397)
Q Consensus       226 LkpgG~lvysTCS  238 (397)
                      |||||++++.|-.
T Consensus       145 L~pgG~~~l~~~~  157 (218)
T PRK13255        145 LPAGCRGLLVTLD  157 (218)
T ss_pred             cCCCCeEEEEEEE
Confidence            9999986655433

>KOG2671|consensus

Probab=98.57  E-value=3.2e-08  Score=96.60  Aligned_cols=89  Identities=24%  Similarity=0.285  Sum_probs=73.1

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHH-------HHHHHHHHhCCCc--EEEEEcc
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVT-------KLEETIKKLQLSS--IQTHVYD  144 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~-------~l~~n~~~~g~~~--v~~~~~D  144 (397)
                      |.+.+....++||+.|.|-..|+|+.....|..   ++.|+|.|||-..+.       ..+.|++++|...  +.+..+|
T Consensus       197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D  273 (421)
T KOG2671|consen  197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD  273 (421)
T ss_pred             HHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeec
Confidence            566677777899999999999999998766664   689999999988776       4689999999654  7788899


Q ss_pred             cccccccchhhHHHhhhcccCccEEEEcCCC
Q psy17793        145 STRINTSSQIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       145 ~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                      +.+..          ...+..||.|+||||+
T Consensus       274 ~sn~~----------~rsn~~fDaIvcDPPY  294 (421)
T KOG2671|consen  274 FSNPP----------LRSNLKFDAIVCDPPY  294 (421)
T ss_pred             ccCcc----------hhhcceeeEEEeCCCc
Confidence            88763          2345689999999996

>PRK06202 hypothetical protein; Provisional

Probab=98.56  E-value=1.9e-07  Score=88.05  Aligned_cols=79  Identities=15%  Similarity=0.113  Sum_probs=57.9

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMN---DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~---~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d  155 (397)
                      ..+...++.+|||+|||+|..+..++....   ...+|+|+|+|+.+++.++++....+   +++...|+..+.      
T Consensus        54 ~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~l~------  124 (232)
T PRK06202         54 PALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG---VTFRQAVSDELV------  124 (232)
T ss_pred             HhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC---CeEEEEeccccc------
Confidence            344445678999999999999998887542   23589999999999999988765443   455555554432      


Q ss_pred             HHHhhhcccCccEEEE
Q psy17793        156 IERMKLQKESFDRILL  171 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~  171 (397)
                           ..+++||+|++
T Consensus       125 -----~~~~~fD~V~~  135 (232)
T PRK06202        125 -----AEGERFDVVTS  135 (232)
T ss_pred             -----ccCCCccEEEE
Confidence                 23468999997

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.54  E-value=5.9e-07  Score=94.40  Aligned_cols=138  Identities=17%  Similarity=0.211  Sum_probs=101.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      .+..+||+|||.|..++++|... +...++|+|++...+..+.+.+++.|++|+.+++.|+..+..         .++++
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~---------~~~~~  416 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILN---------DLPNN  416 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH---------hcCcc
Confidence            46789999999999999999985 567899999999999999999999999999998888764431         25667


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcccc
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN  244 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEn  244 (397)
                      ++|.|.++=|      +|+.+.+..    +.++     .|..+|+.           ..++|||||.|.+.|-.   ++-
T Consensus       417 sv~~i~i~FP------DPWpKkrh~----krRl-----~~~~fl~~-----------~~~~Lk~gG~i~~~TD~---~~y  467 (506)
T PRK01544        417 SLDGIYILFP------DPWIKNKQK----KKRI-----FNKERLKI-----------LQDKLKDNGNLVFASDI---ENY  467 (506)
T ss_pred             cccEEEEECC------CCCCCCCCc----cccc-----cCHHHHHH-----------HHHhcCCCCEEEEEcCC---HHH
Confidence            8999999877      355443322    1222     34666777           88899999999998643   222


Q ss_pred             HHHHHHHHHHCCCcEEE
Q psy17793        245 EAVIAWILHRHPEVELV  261 (397)
Q Consensus       245 E~vV~~~L~~~~~~~l~  261 (397)
                      -+.....+++++.++..
T Consensus       468 ~~~~~~~~~~~~~f~~~  484 (506)
T PRK01544        468 FYEAIELIQQNGNFEII  484 (506)
T ss_pred             HHHHHHHHHhCCCeEec
Confidence            22233344566667654

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=98.52  E-value=2e-07  Score=91.35  Aligned_cols=93  Identities=20%  Similarity=0.269  Sum_probs=64.9

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ...|.++++..++|+.-|.||.|..+++.+.+ ++|+|+|.|+.+++.++++++.++ .++.++..++.++...      
T Consensus        13 l~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~------   84 (310)
T PF01795_consen   13 LEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEY------   84 (310)
T ss_dssp             HHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHH------
T ss_pred             HHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHH------
Confidence            35667899999999999999999999998766 999999999999999998887663 5699999998876321      


Q ss_pred             Hhhh-cccCccEEEEcCCCCCC
Q psy17793        158 RMKL-QKESFDRILLDAPCSGF  178 (397)
Q Consensus       158 ~~~~-~~~~fD~Il~DpPCSg~  178 (397)
                      .... ....+|.||+|-=+|+.
T Consensus        85 l~~~~~~~~~dgiL~DLGvSS~  106 (310)
T PF01795_consen   85 LKELNGINKVDGILFDLGVSSM  106 (310)
T ss_dssp             HHHTTTTS-EEEEEEE-S--HH
T ss_pred             HHHccCCCccCEEEEccccCHH
Confidence            1112 23579999999998874

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.51  E-value=1.4e-06  Score=92.06  Aligned_cols=88  Identities=14%  Similarity=0.242  Sum_probs=63.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCC-------CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHH
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMND-------TGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~-------~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      +.+|||.|||+|++.+.++..+..       ...++|+|+++..+..++.++..++.-.+.+.+.|........      
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~------  105 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLN------  105 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccc------
Confidence            458999999999999998876631       2568999999999999999998887333556666654321000      


Q ss_pred             hhhcccCccEEEEcCCCCCCC
Q psy17793        159 MKLQKESFDRILLDAPCSGFG  179 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G  179 (397)
                      .....+.||+|+.|||+....
T Consensus       106 ~~~~~~~fD~IIgNPPy~~~k  126 (524)
T TIGR02987       106 IESYLDLFDIVITNPPYGRLK  126 (524)
T ss_pred             cccccCcccEEEeCCCccccC
Confidence            000125799999999987653

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG4589|consensus

Probab=98.50  E-value=2.4e-06  Score=77.27  Aligned_cols=137  Identities=21%  Similarity=0.207  Sum_probs=83.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc-ccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY-DSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~-D~~~~~~~~~~d~~~~~~~  162 (397)
                      .|+++|||+|||||.++...-++.++.|.|.++|+-.-           .-...+.++.+ |+++.......   ....+
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki---~e~lp  133 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKI---FEALP  133 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHH---HHhCC
Confidence            57999999999999999988888889999999998321           12223444444 66554211000   01135


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE  242 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e  242 (397)
                      +..+|+||.|--=-.+|.+           + .+...+.    +|..+||.|       |+.+++|+|.++.-+  +..+
T Consensus       134 ~r~VdvVlSDMapnaTGvr-----------~-~Dh~~~i----~LC~s~l~~-------al~~~~p~g~fvcK~--w~g~  188 (232)
T KOG4589|consen  134 NRPVDVVLSDMAPNATGVR-----------I-RDHYRSI----ELCDSALLF-------ALTLLIPNGSFVCKL--WDGS  188 (232)
T ss_pred             CCcccEEEeccCCCCcCcc-----------h-hhHHHHH----HHHHHHHHH-------hhhhcCCCcEEEEEE--ecCC
Confidence            5689999998643333321           1 2333333    334444444       899999999998653  3334


Q ss_pred             ccHHHHHHHHHHCCCcE
Q psy17793        243 ENEAVIAWILHRHPEVE  259 (397)
Q Consensus       243 EnE~vV~~~L~~~~~~~  259 (397)
                      |.....+.+.+.+..++
T Consensus       189 e~~~l~r~l~~~f~~Vk  205 (232)
T KOG4589|consen  189 EEALLQRRLQAVFTNVK  205 (232)
T ss_pred             chHHHHHHHHHHhhhcE
Confidence            44445555555554333

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.47  E-value=1.8e-06  Score=80.69  Aligned_cols=71  Identities=23%  Similarity=0.227  Sum_probs=59.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .++.+|||+|||+|..+..++..   ...|+++|+|+.+++.+++++...+. +++.+..+|...              .
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--------------~  124 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--------------L  124 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--------------c
Confidence            56789999999999999988874   35799999999999999999998887 468888888321              2


Q ss_pred             ccCccEEEE
Q psy17793        163 KESFDRILL  171 (397)
Q Consensus       163 ~~~fD~Il~  171 (397)
                      .+.||+|++
T Consensus       125 ~~~fD~v~~  133 (230)
T PRK07580        125 LGRFDTVVC  133 (230)
T ss_pred             cCCcCEEEE
Confidence            367999986

>KOG1596|consensus

Probab=98.43  E-value=7.3e-07  Score=83.44  Aligned_cols=136  Identities=25%  Similarity=0.295  Sum_probs=102.6

Q ss_pred             hHHHHHhccC------CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccc
Q psy17793         73 PSILAGHYLD------VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST  146 (397)
Q Consensus        73 ~S~l~~~~L~------~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~  146 (397)
                      -|.|++.++.      ++||.+||=+||++|..-.|++..+++.+.|+|+|.|...=+.|..++++-  +||..+..|++
T Consensus       138 rSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDAr  215 (317)
T KOG1596|consen  138 RSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDAR  215 (317)
T ss_pred             HHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCC
Confidence            3667766653      689999999999999999999999999999999999998888888777665  68899999998


Q ss_pred             cccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q psy17793        147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLL  226 (397)
Q Consensus       147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lL  226 (397)
                      ...+.        ...-..+|.|+.|.+                   +.+..      +-+..+           |..+|
T Consensus       216 hP~KY--------RmlVgmVDvIFaDva-------------------qpdq~------RivaLN-----------A~~FL  251 (317)
T KOG1596|consen  216 HPAKY--------RMLVGMVDVIFADVA-------------------QPDQA------RIVALN-----------AQYFL  251 (317)
T ss_pred             Cchhe--------eeeeeeEEEEeccCC-------------------Cchhh------hhhhhh-----------hhhhh
Confidence            76321        123357899999987                   11111      222234           77899


Q ss_pred             cCCcEEEEE---ecCCCccccHHHHHHHHHH
Q psy17793        227 KKDGILVYC---TCSLSVEENEAVIAWILHR  254 (397)
Q Consensus       227 kpgG~lvys---TCS~~~eEnE~vV~~~L~~  254 (397)
                      |+||-+|.|   .|+-....+|.+.+.-.++
T Consensus       252 k~gGhfvisikancidstv~ae~vFa~Ev~k  282 (317)
T KOG1596|consen  252 KNGGHFVISIKANCIDSTVFAEAVFAAEVKK  282 (317)
T ss_pred             ccCCeEEEEEecccccccccHHHHHHHHHHH
Confidence            999998887   5777777888776554433

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.43  E-value=2.3e-06  Score=85.77  Aligned_cols=138  Identities=17%  Similarity=0.261  Sum_probs=94.7

Q ss_pred             cCCCcEEEechhH---HHHHh---ccCCCCCCeEEEEcCCCChHHHHHHHHcCC--------------------------
Q psy17793         62 LDSSMGILQNLPS---ILAGH---YLDVQPGQKVLDMCAAPGNKLTHIALLMND--------------------------  109 (397)
Q Consensus        62 ~~~g~~~~Qd~~S---~l~~~---~L~~~~g~~VLDlcagpG~kt~~lA~~~~~--------------------------  109 (397)
                      .+-||-..+..+.   .+++.   +.+.++++.++|--||+|.+.+..|.+-.+                          
T Consensus       162 hkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~  241 (381)
T COG0116         162 HKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLR  241 (381)
T ss_pred             hhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHH
Confidence            4556655554442   23332   334677889999999999999988776432                          


Q ss_pred             -----Cc-------EEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCC
Q psy17793        110 -----TG-------TLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCS  176 (397)
Q Consensus       110 -----~~-------~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCS  176 (397)
                           .+       .++|+|+|+.+++.++.|+++.|+.. |++...|++.+..         ++  +.+|+|++|||+ 
T Consensus       242 ~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~---------~~--~~~gvvI~NPPY-  309 (381)
T COG0116         242 EEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKE---------PL--EEYGVVISNPPY-  309 (381)
T ss_pred             HHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCC---------CC--CcCCEEEeCCCc-
Confidence                 11       47899999999999999999999976 9999999998742         12  689999999995 


Q ss_pred             CCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        177 GFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       177 g~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                        |.|     -.+    ++.+.   .+-+.+.+.           +.+.++--++.|++|
T Consensus       310 --GeR-----lg~----~~~v~---~LY~~fg~~-----------lk~~~~~ws~~v~tt  344 (381)
T COG0116         310 --GER-----LGS----EALVA---KLYREFGRT-----------LKRLLAGWSRYVFTT  344 (381)
T ss_pred             --chh-----cCC----hhhHH---HHHHHHHHH-----------HHHHhcCCceEEEEc
Confidence              211     001    12222   233455555           556777777888874

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.42  E-value=7.8e-07  Score=87.99  Aligned_cols=70  Identities=20%  Similarity=0.166  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEEcccccccccchhhHHHh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-----LSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      ++.+|||+|||+|..+..++..   +.+|+|+|+|+.+++.++++++..+     ..++++...|...+           
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-----------  209 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-----------  209 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----------
Confidence            5789999999999999999874   4689999999999999999988763     23567777776432           


Q ss_pred             hhcccCccEEEE
Q psy17793        160 KLQKESFDRILL  171 (397)
Q Consensus       160 ~~~~~~fD~Il~  171 (397)
                         .++||+|++
T Consensus       210 ---~~~fD~Vv~  218 (315)
T PLN02585        210 ---SGKYDTVTC  218 (315)
T ss_pred             ---CCCcCEEEE
Confidence               367999986

>KOG3420|consensus

Probab=98.42  E-value=2.9e-07  Score=79.93  Aligned_cols=77  Identities=17%  Similarity=0.301  Sum_probs=64.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      -+|..++|+|||.|..++  |..+.....|+|+|+++.+++...+|++.+.+. +.+.++|..+..           +..
T Consensus        47 iEgkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle-----------~~~  112 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLE-----------LKG  112 (185)
T ss_pred             ccCcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccchh-----------ccC
Confidence            368899999999999984  333445678999999999999999999999874 688888887763           345


Q ss_pred             cCccEEEEcCC
Q psy17793        164 ESFDRILLDAP  174 (397)
Q Consensus       164 ~~fD~Il~DpP  174 (397)
                      +.||.++.|||
T Consensus       113 g~fDtaviNpp  123 (185)
T KOG3420|consen  113 GIFDTAVINPP  123 (185)
T ss_pred             CeEeeEEecCC
Confidence            78999999999

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=4.1e-06  Score=76.73  Aligned_cols=129  Identities=26%  Similarity=0.318  Sum_probs=94.8

Q ss_pred             hHHHHHhccC------CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccc
Q psy17793         73 PSILAGHYLD------VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST  146 (397)
Q Consensus        73 ~S~l~~~~L~------~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~  146 (397)
                      -|.+++.+|.      +++|++||=+||++|....|++...+ .|.|+|+|.++...+.+-..+++-  +||..+..|++
T Consensus        58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~  134 (231)
T COG1889          58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDAR  134 (231)
T ss_pred             hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC--CCceeeecccC
Confidence            4666666653      67899999999999999999999986 799999999999999988888764  68899999998


Q ss_pred             cccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHH-HHHHHhhhhcccccccccc
Q psy17793        147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKK-LLQAVYRFVSLFDWQGIPL  225 (397)
Q Consensus       147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~-lL~~~~~f~~~~~~~a~~l  225 (397)
                      .....        ...-+.+|+|..|..                          .+-|.+ +..+           |-.+
T Consensus       135 ~P~~Y--------~~~Ve~VDviy~DVA--------------------------Qp~Qa~I~~~N-----------a~~F  169 (231)
T COG1889         135 KPEKY--------RHLVEKVDVIYQDVA--------------------------QPNQAEILADN-----------AEFF  169 (231)
T ss_pred             CcHHh--------hhhcccccEEEEecC--------------------------CchHHHHHHHH-----------HHHh
Confidence            75321        122357999999875                          011233 3345           7789


Q ss_pred             ccCCcEE--EEEecCCCcccc-HHHHH
Q psy17793        226 LKKDGIL--VYCTCSLSVEEN-EAVIA  249 (397)
Q Consensus       226 LkpgG~l--vysTCS~~~eEn-E~vV~  249 (397)
                      ||+||.+  +.-.-|+...+. +++.+
T Consensus       170 Lk~~G~~~i~iKArSIdvT~dp~~vf~  196 (231)
T COG1889         170 LKKGGYVVIAIKARSIDVTADPEEVFK  196 (231)
T ss_pred             cccCCeEEEEEEeecccccCCHHHHHH
Confidence            9999954  455667665544 44444

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.35  E-value=4.7e-07  Score=81.87  Aligned_cols=100  Identities=18%  Similarity=0.200  Sum_probs=79.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES  165 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~  165 (397)
                      .+.+.|+|||+|..+...|..   .-+|+|+|.+|.+.+.+++|++-.|..|++++.+|++...           |  ++
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~-----------f--e~   96 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD-----------F--EN   96 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-----------c--cc
Confidence            378999999999999877764   5689999999999999999999999999999999998763           3  46


Q ss_pred             ccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793        166 FDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV  233 (397)
Q Consensus       166 fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv  233 (397)
                      .|+|+|.                    + -+..-+.+.|-..+..           ++++||..++++
T Consensus        97 ADvvicE--------------------m-lDTaLi~E~qVpV~n~-----------vleFLr~d~tii  132 (252)
T COG4076          97 ADVVICE--------------------M-LDTALIEEKQVPVINA-----------VLEFLRYDPTII  132 (252)
T ss_pred             cceeHHH--------------------H-hhHHhhcccccHHHHH-----------HHHHhhcCCccc
Confidence            7999871                    1 2222334566777888           777788887775

>KOG2899|consensus

Probab=98.34  E-value=1.6e-06  Score=81.36  Aligned_cols=48  Identities=15%  Similarity=0.170  Sum_probs=42.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL  133 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~  133 (397)
                      .+..+||+||-+|..|+++|...+ ...|.|+|||+..++.|+++++..
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~  105 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFP  105 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhcccc
Confidence            356899999999999999999875 457999999999999999998754

>PLN02823 spermine synthase

Probab=98.30  E-value=8.4e-06  Score=81.35  Aligned_cols=78  Identities=14%  Similarity=0.133  Sum_probs=62.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEEcccccccccchhhHHHhhh
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ----LSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g----~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ..+||.+|.|.|+.+..+++.- +..+|+++|+|+..++.+++.+...+    -++++++.+|++.+...          
T Consensus       104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~----------  172 (336)
T PLN02823        104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK----------  172 (336)
T ss_pred             CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh----------
Confidence            4689999999999888777642 34689999999999999999876432    24699999999987522          


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      ..++||+|++|.+
T Consensus       173 ~~~~yDvIi~D~~  185 (336)
T PLN02823        173 RDEKFDVIIGDLA  185 (336)
T ss_pred             CCCCccEEEecCC
Confidence            3468999999974

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.30  E-value=2.9e-06  Score=81.24  Aligned_cols=82  Identities=13%  Similarity=0.184  Sum_probs=66.2

Q ss_pred             HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh
Q psy17793         75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI  154 (397)
Q Consensus        75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~  154 (397)
                      .-+...++..++++|||+|||+|..|..++...   ..|+++|+|+.+++.+++++..  ..+++++.+|+....     
T Consensus        19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~-----   88 (253)
T TIGR00755        19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVD-----   88 (253)
T ss_pred             HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCC-----
Confidence            334456677889999999999999999999864   4699999999999999987754  357999999998763     


Q ss_pred             hHHHhhhcccCcc---EEEEcCC
Q psy17793        155 DIERMKLQKESFD---RILLDAP  174 (397)
Q Consensus       155 d~~~~~~~~~~fD---~Il~DpP  174 (397)
                            +  ..||   .|+.++|
T Consensus        89 ------~--~~~d~~~~vvsNlP  103 (253)
T TIGR00755        89 ------L--PDFPKQLKVVSNLP  103 (253)
T ss_pred             ------h--hHcCCcceEEEcCC
Confidence                  1  1355   9999998

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG2730|consensus

Probab=98.29  E-value=5.4e-07  Score=83.31  Aligned_cols=85  Identities=18%  Similarity=0.257  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .-+.|+|..||-||-|++.|..   ...|+++|+||.++..+++|++-+|+.+ |.++++|+.+....       ..+..
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~-------lq~~K  163 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASK-------LKADK  163 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHH-------Hhhhh
Confidence            3468999999999999998884   4689999999999999999999999976 99999999876422       12333


Q ss_pred             cCccEEEEcCCCCCCC
Q psy17793        164 ESFDRILLDAPCSGFG  179 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G  179 (397)
                      ..+|.|++-||-+|.+
T Consensus       164 ~~~~~vf~sppwggp~  179 (263)
T KOG2730|consen  164 IKYDCVFLSPPWGGPS  179 (263)
T ss_pred             heeeeeecCCCCCCcc
Confidence            4588999999999877

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.28  E-value=3e-06  Score=77.57  Aligned_cols=71  Identities=23%  Similarity=0.259  Sum_probs=59.4

Q ss_pred             eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCcc
Q psy17793         88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFD  167 (397)
Q Consensus        88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD  167 (397)
                      +++|+|+|.|--++-+|-.. +..+++.+|.+..++.-++.-+.++|++|+++++..+...            ....+||
T Consensus        51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~------------~~~~~fd  117 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP------------EYRESFD  117 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT------------TTTT-EE
T ss_pred             eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc------------ccCCCcc
Confidence            89999999999998888765 6679999999999999999999999999999999988761            1346899


Q ss_pred             EEEE
Q psy17793        168 RILL  171 (397)
Q Consensus       168 ~Il~  171 (397)
                      .|++
T Consensus       118 ~v~a  121 (184)
T PF02527_consen  118 VVTA  121 (184)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9997

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.28  E-value=8.2e-06  Score=89.12  Aligned_cols=84  Identities=17%  Similarity=0.255  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcC-----------------------------------------CCcEEEEEeCCHHH
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMN-----------------------------------------DTGTLIALDKSKPR  122 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~-----------------------------------------~~~~V~avD~s~~r  122 (397)
                      ++++.++|.+||+|.+.+..|.+..                                         ...+|+|+|+|+.+
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            5678999999999999988776421                                         12369999999999


Q ss_pred             HHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCC
Q psy17793        123 VTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCS  176 (397)
Q Consensus       123 l~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCS  176 (397)
                      ++.+++|++.+|+.+ |.+..+|+.++..         +...+.||.|++|||+-
T Consensus       269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~---------~~~~~~~d~IvtNPPYg  314 (702)
T PRK11783        269 IQAARKNARRAGVAELITFEVKDVADLKN---------PLPKGPTGLVISNPPYG  314 (702)
T ss_pred             HHHHHHHHHHcCCCcceEEEeCChhhccc---------ccccCCCCEEEECCCCc
Confidence            999999999999975 8899999987631         12235699999999963

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.28  E-value=3.2e-06  Score=87.45  Aligned_cols=117  Identities=20%  Similarity=0.229  Sum_probs=78.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHH---cCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhh
Q psy17793         86 GQKVLDMCAAPGNKLTHIALL---MNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~---~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      +..|+|+|||+|..+...+..   .+...+|+|+|.++.+...+++.+++++.. .|+++.+|++.+.            
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~------------  254 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE------------  254 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC------------
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC------------
Confidence            468999999999998655443   234679999999999999999998999984 5999999999883            


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC--C
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS--L  239 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS--~  239 (397)
                      .++++|+|+.-.=             .+++. .+    +.   .+.|..           +-++|||||+++=+.++  +
T Consensus       255 lpekvDIIVSElL-------------Gsfg~-nE----l~---pE~Lda-----------~~rfLkp~Gi~IP~~~t~yl  302 (448)
T PF05185_consen  255 LPEKVDIIVSELL-------------GSFGD-NE----LS---PECLDA-----------ADRFLKPDGIMIPSSYTSYL  302 (448)
T ss_dssp             HSS-EEEEEE----------------BTTBT-TT----SH---HHHHHH-----------GGGGEEEEEEEESSEEEEEE
T ss_pred             CCCceeEEEEecc-------------CCccc-cc----cC---HHHHHH-----------HHhhcCCCCEEeCcchhhEE
Confidence            3468999997321             11110 01    11   345666           88999999998644444  3


Q ss_pred             CccccHH
Q psy17793        240 SVEENEA  246 (397)
Q Consensus       240 ~~eEnE~  246 (397)
                      .|-+.+.
T Consensus       303 aPiss~~  309 (448)
T PF05185_consen  303 APISSPK  309 (448)
T ss_dssp             EEEE-HH
T ss_pred             EEeeCHH
Confidence            3444443

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=98.25  E-value=3.6e-06  Score=88.15  Aligned_cols=110  Identities=17%  Similarity=0.145  Sum_probs=88.2

Q ss_pred             CCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHhCCC-cEE
Q psy17793         64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMND---TGTLIALDKSKPRVTKLEETIKKLQLS-SIQ  139 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~---~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~  139 (397)
                      .|.|+....-+.+++.++.+++.++|+|-|||+|+.-+..+..+..   ...++|.|+++.....++.|+--.|+. ++.
T Consensus       165 ~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~  244 (489)
T COG0286         165 AGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN  244 (489)
T ss_pred             CCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence            3888888889999999999999999999999999999998888743   367999999999999999999999987 355


Q ss_pred             EEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC
Q psy17793        140 THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG  179 (397)
Q Consensus       140 ~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G  179 (397)
                      ...+|...-+..   +   .....++||.|+.+||.|+.+
T Consensus       245 i~~~dtl~~~~~---~---~~~~~~~~D~viaNPPf~~~~  278 (489)
T COG0286         245 IRHGDTLSNPKH---D---DKDDKGKFDFVIANPPFSGKG  278 (489)
T ss_pred             ccccccccCCcc---c---ccCCccceeEEEeCCCCCccc
Confidence            555655433211   0   012346799999999999766

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=5.1e-06  Score=79.61  Aligned_cols=97  Identities=11%  Similarity=0.146  Sum_probs=76.4

Q ss_pred             CcEEEechhH-HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc
Q psy17793         65 SMGILQNLPS-ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY  143 (397)
Q Consensus        65 g~~~~Qd~~S-~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~  143 (397)
                      |.-++.|..- .-++...++.+++.||++|+|.|+.|..+++.   ..+|+|+|+|+..++.+++.+.  ...|++++.+
T Consensus         9 GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~   83 (259)
T COG0030           9 GQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA--PYDNLTVING   83 (259)
T ss_pred             ccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeC
Confidence            3334455442 34566778888999999999999999999995   4679999999999999998876  3468999999


Q ss_pred             ccccccccchhhHHHhhhccc-CccEEEEcCCCCC
Q psy17793        144 DSTRINTSSQIDIERMKLQKE-SFDRILLDAPCSG  177 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~~-~fD~Il~DpPCSg  177 (397)
                      |+.+..           +..- .++.|+.|-|++=
T Consensus        84 DaLk~d-----------~~~l~~~~~vVaNlPY~I  107 (259)
T COG0030          84 DALKFD-----------FPSLAQPYKVVANLPYNI  107 (259)
T ss_pred             chhcCc-----------chhhcCCCEEEEcCCCcc
Confidence            998873           2111 6899999999754

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.24  E-value=3.3e-06  Score=85.54  Aligned_cols=78  Identities=26%  Similarity=0.247  Sum_probs=60.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEEcccccccccchhhHHHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS--IQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~--v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      +-+|||.-||+|.-++..+.-+.+..+|+++|+|+++++.+++|++.++++.  +++.+.|+..+..          ...
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~----------~~~  119 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY----------SRQ  119 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC----------HST
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh----------hcc
Confidence            3489999999999999999987666799999999999999999999999976  8999999977631          145


Q ss_pred             cCccEEEEcC
Q psy17793        164 ESFDRILLDA  173 (397)
Q Consensus       164 ~~fD~Il~Dp  173 (397)
                      ..||+|=+||
T Consensus       120 ~~fD~IDlDP  129 (377)
T PF02005_consen  120 ERFDVIDLDP  129 (377)
T ss_dssp             T-EEEEEE--
T ss_pred             ccCCEEEeCC
Confidence            7899999998

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.23  E-value=3.9e-06  Score=83.61  Aligned_cols=114  Identities=25%  Similarity=0.334  Sum_probs=73.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC----------CcEEEEEcccccccccchh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL----------SSIQTHVYDSTRINTSSQI  154 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~----------~~v~~~~~D~~~~~~~~~~  154 (397)
                      ++.+|||+|||-||-..-...  .+-..++|+|++...++.++++.+.+.-          -...++..|......    
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~--~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l----  135 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQK--AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESL----  135 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHH--TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHH----
T ss_pred             CCCeEEEecCCCchhHHHHHh--cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchh----
Confidence            788999999999998876665  3567999999999999999999954321          124566777653210    


Q ss_pred             hHHHhhhcc--cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE
Q psy17793        155 DIERMKLQK--ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL  232 (397)
Q Consensus       155 d~~~~~~~~--~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l  232 (397)
                         ...+..  ..||+|-|           .+..+..+.+ .+..       +.+|.+           +...|||||++
T Consensus       136 ---~~~~~~~~~~FDvVSc-----------QFalHY~Fes-e~~a-------r~~l~N-----------vs~~Lk~GG~F  182 (331)
T PF03291_consen  136 ---REKLPPRSRKFDVVSC-----------QFALHYAFES-EEKA-------RQFLKN-----------VSSLLKPGGYF  182 (331)
T ss_dssp             ---HCTSSSTTS-EEEEEE-----------ES-GGGGGSS-HHHH-------HHHHHH-----------HHHTEEEEEEE
T ss_pred             ---hhhccccCCCcceeeh-----------HHHHHHhcCC-HHHH-------HHHHHH-----------HHHhcCCCCEE
Confidence               011222  48999987           2222322111 1222       668889           99999999999


Q ss_pred             EEEec
Q psy17793        233 VYCTC  237 (397)
Q Consensus       233 vysTC  237 (397)
                      +-+|-
T Consensus       183 IgT~~  187 (331)
T PF03291_consen  183 IGTTP  187 (331)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            98753

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG1499|consensus

Probab=98.22  E-value=6.3e-06  Score=81.31  Aligned_cols=112  Identities=19%  Similarity=0.131  Sum_probs=81.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .+..|||+|||+|..++..|..  +..+|+|+|.|.-+ +.+++.++.+++++ |+++.+.+..+.           .+.
T Consensus        60 ~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~-----------LP~  125 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE-----------LPV  125 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe-----------cCc
Confidence            5889999999999999877774  57899999987655 99999999999988 788888776652           234


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV  241 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~  241 (397)
                      +++|+|+.             .|...           .-+-..+|+.+|.+       ==++|+|||.+.=++|+++-
T Consensus       126 eKVDiIvS-------------EWMGy-----------~Ll~EsMldsVl~A-------RdkwL~~~G~i~P~~a~l~l  172 (346)
T KOG1499|consen  126 EKVDIIVS-------------EWMGY-----------FLLYESMLDSVLYA-------RDKWLKEGGLIYPDRATLYL  172 (346)
T ss_pred             cceeEEee-------------hhhhH-----------HHHHhhhhhhhhhh-------hhhccCCCceEccccceEEE
Confidence            78999986             11111           11112334432222       23799999999988888654

>KOG1661|consensus

Probab=98.21  E-value=4.3e-06  Score=77.01  Aligned_cols=86  Identities=23%  Similarity=0.301  Sum_probs=69.8

Q ss_pred             HHhccC--CCCCCeEEEEcCCCChHHHHHHHHcCCCcEE-EEEeCCHHHHHHHHHHHHHhC----------CCcEEEEEc
Q psy17793         77 AGHYLD--VQPGQKVLDMCAAPGNKLTHIALLMNDTGTL-IALDKSKPRVTKLEETIKKLQ----------LSSIQTHVY  143 (397)
Q Consensus        77 ~~~~L~--~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V-~avD~s~~rl~~l~~n~~~~g----------~~~v~~~~~  143 (397)
                      +-..|+  ++||..+||+|+|+|..|+.+|.+++..+.+ +++|.-++-++..++|+.+.-          ..++.++.+
T Consensus        72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG  151 (237)
T KOG1661|consen   72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG  151 (237)
T ss_pred             HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence            334566  7899999999999999999999888766664 999999999999999998764          135788899


Q ss_pred             ccccccccchhhHHHhhhcccCccEEEEcC
Q psy17793        144 DSTRINTSSQIDIERMKLQKESFDRILLDA  173 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~Dp  173 (397)
                      |.+....           ....||+|.+-|
T Consensus       152 Dgr~g~~-----------e~a~YDaIhvGA  170 (237)
T KOG1661|consen  152 DGRKGYA-----------EQAPYDAIHVGA  170 (237)
T ss_pred             CccccCC-----------ccCCcceEEEcc
Confidence            9887642           336799999844

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.17  E-value=4e-06  Score=75.88  Aligned_cols=80  Identities=21%  Similarity=0.208  Sum_probs=51.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEEcccccccccchhhHHHh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ---LSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g---~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      ...+.+||++|||.|.-++.+|.+. +..+|++-|.++ .++.++.|++.++   -.++.+...|.....       ...
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~-------~~~  113 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDEL-------DSD  113 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-H-------HHH
T ss_pred             hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcc-------ccc
Confidence            3467899999999999998888763 567999999999 9999999999987   235777777654321       011


Q ss_pred             hhcccCccEEEE
Q psy17793        160 KLQKESFDRILL  171 (397)
Q Consensus       160 ~~~~~~fD~Il~  171 (397)
                      ......||+||.
T Consensus       114 ~~~~~~~D~Ila  125 (173)
T PF10294_consen  114 LLEPHSFDVILA  125 (173)
T ss_dssp             HHS-SSBSEEEE
T ss_pred             ccccccCCEEEE
Confidence            123468999996

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG1099|consensus

Probab=98.17  E-value=5.5e-06  Score=77.15  Aligned_cols=129  Identities=22%  Similarity=0.335  Sum_probs=86.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCC----Cc----EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHH
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMND----TG----TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~----~~----~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      .+|+|+|||||+++..++..+-.    .+    .|+|||+.+-.           -++.|..+.+|.+...+.   ..-.
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~sta---e~Ii  108 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTA---EAII  108 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHH---HHHH
Confidence            58999999999999999987643    22    39999986532           456788889999876321   0001


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      .-|..++-|+|++|--       |+..      -+ .++.++  .|.+||..||..       +...|||||.+|-   -
T Consensus       109 ~hfggekAdlVvcDGA-------PDvT------Gl-Hd~DEy--~Q~qLllaAl~i-------~t~Vlk~Gg~FVa---K  162 (294)
T KOG1099|consen  109 EHFGGEKADLVVCDGA-------PDVT------GL-HDLDEY--VQAQLLLAALNI-------ATCVLKPGGSFVA---K  162 (294)
T ss_pred             HHhCCCCccEEEeCCC-------CCcc------cc-ccHHHH--HHHHHHHHHHHH-------HhheecCCCeeeh---h
Confidence            1245568999999843       2221      11 334444  567888888877       7889999999986   3


Q ss_pred             CCccccHHHHHHHHHHC
Q psy17793        239 LSVEENEAVIAWILHRH  255 (397)
Q Consensus       239 ~~~eEnE~vV~~~L~~~  255 (397)
                      +...++-..+-.-|+.+
T Consensus       163 ifRg~~tslLysql~~f  179 (294)
T KOG1099|consen  163 IFRGRDTSLLYSQLRKF  179 (294)
T ss_pred             hhccCchHHHHHHHHHH
Confidence            66666665555444443

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.13  E-value=1.8e-05  Score=77.04  Aligned_cols=119  Identities=18%  Similarity=0.120  Sum_probs=74.5

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEE-cccccccccchhh
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV-YDSTRINTSSQID  155 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~-~D~~~~~~~~~~d  155 (397)
                      +...+..-.|.+|||+||+.|..+..++..  +...|+|+|.+..-+...+---+-+|.+...... .-...+       
T Consensus       107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~L-------  177 (315)
T PF08003_consen  107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDL-------  177 (315)
T ss_pred             HHhhhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhc-------
Confidence            334444567999999999999999988884  6678999999988776654444444543322211 111111       


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                          +. .+.||.|++      .|.    .++.+     .-        ...|..           ....|++||.||.-
T Consensus       178 ----p~-~~~FDtVF~------MGV----LYHrr-----~P--------l~~L~~-----------Lk~~L~~gGeLvLE  218 (315)
T PF08003_consen  178 ----PN-LGAFDTVFS------MGV----LYHRR-----SP--------LDHLKQ-----------LKDSLRPGGELVLE  218 (315)
T ss_pred             ----cc-cCCcCEEEE------eee----hhccC-----CH--------HHHHHH-----------HHHhhCCCCEEEEE
Confidence                12 468999996      331    11111     11        233444           66689999999999


Q ss_pred             ecCCCccc
Q psy17793        236 TCSLSVEE  243 (397)
Q Consensus       236 TCS~~~eE  243 (397)
                      |--+..++
T Consensus       219 Tlvi~g~~  226 (315)
T PF08003_consen  219 TLVIDGDE  226 (315)
T ss_pred             EeeecCCC
Confidence            76554443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.09  E-value=2.3e-05  Score=73.20  Aligned_cols=73  Identities=16%  Similarity=0.223  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES  165 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~  165 (397)
                      +.+++|+|+|.|--++-+|- +.+..+|+-+|...+|+.-+++..+.+|++|++++++.+.++..            ...
T Consensus        68 ~~~~~DIGSGaGfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~------------~~~  134 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ------------EKK  134 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc------------ccc
Confidence            57999999999999998884 34667799999999999999999999999999999998877631            123


Q ss_pred             -ccEEEE
Q psy17793        166 -FDRILL  171 (397)
Q Consensus       166 -fD~Il~  171 (397)
                       ||+|++
T Consensus       135 ~~D~vts  141 (215)
T COG0357         135 QYDVVTS  141 (215)
T ss_pred             cCcEEEe
Confidence             999986

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.08  E-value=2.3e-05  Score=74.91  Aligned_cols=127  Identities=16%  Similarity=0.188  Sum_probs=85.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC----CcEEEEEcccccccccchhhHHHhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL----SSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~----~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      ..++||=+|.|.|+.+..+... .+-.+|+++|+|+..++.+++-+.....    ++++++..|+..+...         
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~---------  145 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE---------  145 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT---------
T ss_pred             CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh---------
Confidence            4679999999999998877664 2346899999999999999998876543    3699999999887633         


Q ss_pred             hccc-CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        161 LQKE-SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       161 ~~~~-~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                       ..+ +||+|++|.+= ..+..             ..+     ..++.++.           +.+.|++||.++.-.-+ 
T Consensus       146 -~~~~~yDvIi~D~~d-p~~~~-------------~~l-----~t~ef~~~-----------~~~~L~~~Gv~v~~~~~-  193 (246)
T PF01564_consen  146 -TQEEKYDVIIVDLTD-PDGPA-------------PNL-----FTREFYQL-----------CKRRLKPDGVLVLQAGS-  193 (246)
T ss_dssp             -SSST-EEEEEEESSS-TTSCG-------------GGG-----SSHHHHHH-----------HHHHEEEEEEEEEEEEE-
T ss_pred             -ccCCcccEEEEeCCC-CCCCc-------------ccc-----cCHHHHHH-----------HHhhcCCCcEEEEEccC-
Confidence             234 89999999972 11110             000     11455666           88899999999886533 


Q ss_pred             CccccHHHHHHHHHH
Q psy17793        240 SVEENEAVIAWILHR  254 (397)
Q Consensus       240 ~~eEnE~vV~~~L~~  254 (397)
                       +..+++.+..+.+.
T Consensus       194 -~~~~~~~~~~i~~t  207 (246)
T PF01564_consen  194 -PFLHPELFKSILKT  207 (246)
T ss_dssp             -TTTTHHHHHHHHHH
T ss_pred             -cccchHHHHHHHHH
Confidence             33445555544443

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG4300|consensus

Probab=98.08  E-value=5.1e-06  Score=76.36  Aligned_cols=125  Identities=17%  Similarity=0.231  Sum_probs=86.2

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE-EEEcccccccccchhhHHHh
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ-THVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~-~~~~D~~~~~~~~~~d~~~~  159 (397)
                      +.......||++|||||.---..-.  .+..+|+++|.++.+-+.+.+.+++..-.++. ++.+|+.++.          
T Consensus        72 ~gk~~K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~----------  139 (252)
T KOG4300|consen   72 LGKSGKGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLP----------  139 (252)
T ss_pred             hcccCccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCc----------
Confidence            3333334689999999975433321  25678999999999999999988887656666 8889988874          


Q ss_pred             hhcccCccEEEEcC-CCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        160 KLQKESFDRILLDA-PCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       160 ~~~~~~fD~Il~Dp-PCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      ...++++|.|++-- =||-                        +-+.+.|.+           ..++|||||++++..  
T Consensus       140 ~l~d~s~DtVV~TlvLCSv------------------------e~~~k~L~e-----------~~rlLRpgG~iifiE--  182 (252)
T KOG4300|consen  140 QLADGSYDTVVCTLVLCSV------------------------EDPVKQLNE-----------VRRLLRPGGRIIFIE--  182 (252)
T ss_pred             ccccCCeeeEEEEEEEecc------------------------CCHHHHHHH-----------HHHhcCCCcEEEEEe--
Confidence            24678999998621 1221                        112667777           899999999999872  


Q ss_pred             CCccccHHHHHHHHHHC
Q psy17793        239 LSVEENEAVIAWILHRH  255 (397)
Q Consensus       239 ~~~eEnE~vV~~~L~~~  255 (397)
                       |..+.-.-..+++++.
T Consensus       183 -Hva~~y~~~n~i~q~v  198 (252)
T KOG4300|consen  183 -HVAGEYGFWNRILQQV  198 (252)
T ss_pred             -cccccchHHHHHHHHH
Confidence             3333333555666654

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.05  E-value=4.2e-05  Score=72.28  Aligned_cols=135  Identities=16%  Similarity=0.238  Sum_probs=76.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      .|.+||=+|  -.-.+...+.+.+...+|+.+|+|+..++.+++.+++.|++ |++...|+++.+..         ...+
T Consensus        44 ~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~---------~~~~  111 (243)
T PF01861_consen   44 EGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPE---------ELRG  111 (243)
T ss_dssp             TT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---T---------TTSS
T ss_pred             cCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCH---------HHhc
Confidence            578898555  56555545555566789999999999999999999999997 99999999876522         2357


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc-c
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE-E  243 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e-E  243 (397)
                      +||.++.|||.+                 .+.+       .-+|.+           ++..||..|...|-..+..+. -
T Consensus       112 ~fD~f~TDPPyT-----------------~~G~-------~LFlsR-----------gi~~Lk~~g~~gy~~~~~~~~s~  156 (243)
T PF01861_consen  112 KFDVFFTDPPYT-----------------PEGL-------KLFLSR-----------GIEALKGEGCAGYFGFTHKEASP  156 (243)
T ss_dssp             -BSEEEE---SS-----------------HHHH-------HHHHHH-----------HHHTB-STT-EEEEEE-TTT--H
T ss_pred             CCCEEEeCCCCC-----------------HHHH-------HHHHHH-----------HHHHhCCCCceEEEEEecCcCcH
Confidence            899999999943                 2333       345666           888888777555654443321 1


Q ss_pred             cH-HHHHHHHHHCCCcEEEecCccc
Q psy17793        244 NE-AVIAWILHRHPEVELVQTLPQL  267 (397)
Q Consensus       244 nE-~vV~~~L~~~~~~~l~~~~~~~  267 (397)
                      .+ ..+++++-+. ++.+..+.+.+
T Consensus       157 ~~~~~~Q~~l~~~-gl~i~dii~~F  180 (243)
T PF01861_consen  157 DKWLEVQRFLLEM-GLVITDIIPDF  180 (243)
T ss_dssp             HHHHHHHHHHHTS---EEEEEEEEE
T ss_pred             HHHHHHHHHHHHC-CcCHHHHHhhh
Confidence            12 2466666665 67777766544

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.04  E-value=2.2e-05  Score=71.95  Aligned_cols=71  Identities=18%  Similarity=0.197  Sum_probs=52.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++++|||+|||+|..+..++...  ...++++|+++.+++.+++       .+++++..|+....         +++..
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l---------~~~~~   73 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGL---------EAFPD   73 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhcc---------cccCC
Confidence            467899999999999998887642  4578999999999888754       23567777775421         11345


Q ss_pred             cCccEEEEc
Q psy17793        164 ESFDRILLD  172 (397)
Q Consensus       164 ~~fD~Il~D  172 (397)
                      ++||.|++.
T Consensus        74 ~sfD~Vi~~   82 (194)
T TIGR02081        74 KSFDYVILS   82 (194)
T ss_pred             CCcCEEEEh
Confidence            689999984

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.03  E-value=3.5e-05  Score=72.69  Aligned_cols=112  Identities=10%  Similarity=0.031  Sum_probs=75.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH------------HHhCCCcEEEEEcccccccc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETI------------KKLQLSSIQTHVYDSTRINT  150 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~------------~~~g~~~v~~~~~D~~~~~~  150 (397)
                      +.++.+||+.+||.|--..+||+.   +-.|+|+|+|+.+++.+.+..            ++....+|++.++|+..+..
T Consensus        41 ~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~  117 (226)
T PRK13256         41 INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK  117 (226)
T ss_pred             CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence            345789999999999999999984   567999999999999985521            11222468999999988731


Q ss_pred             cchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccch-HHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793        151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNL-DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD  229 (397)
Q Consensus       151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~-~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg  229 (397)
                      .        .-..+.||.|.= =-              .+..+ +..-       .+..++           ..++|+||
T Consensus       118 ~--------~~~~~~fD~VyD-ra--------------~~~Alpp~~R-------~~Y~~~-----------l~~lL~pg  156 (226)
T PRK13256        118 I--------ANNLPVFDIWYD-RG--------------AYIALPNDLR-------TNYAKM-----------MLEVCSNN  156 (226)
T ss_pred             c--------ccccCCcCeeee-eh--------------hHhcCCHHHH-------HHHHHH-----------HHHHhCCC
Confidence            0        001257999763 00              01111 1222       334445           77899999


Q ss_pred             cEEEEEecC
Q psy17793        230 GILVYCTCS  238 (397)
Q Consensus       230 G~lvysTCS  238 (397)
                      |.++..|-.
T Consensus       157 g~llll~~~  165 (226)
T PRK13256        157 TQILLLVME  165 (226)
T ss_pred             cEEEEEEEe
Confidence            999888643

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.01  E-value=8.3e-06  Score=76.12  Aligned_cols=106  Identities=20%  Similarity=0.276  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      +=.++||+|||+|-.+-.+-.+.   .+++++|+|.+|++.+.+.    |+-. .+...|+..+...         ...+
T Consensus       125 ~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD-~L~~Aea~~Fl~~---------~~~e  187 (287)
T COG4976         125 PFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD-TLYVAEAVLFLED---------LTQE  187 (287)
T ss_pred             ccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH-HHHHHHHHHHhhh---------ccCC
Confidence            34699999999999998877763   5799999999999988764    2211 1222333322211         2347


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV  241 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~  241 (397)
                      +||+|..                      ...+.-+-.+ ..++..           +..+|+|||.+.+|.-+...
T Consensus       188 r~DLi~A----------------------aDVl~YlG~L-e~~~~~-----------aa~~L~~gGlfaFSvE~l~~  230 (287)
T COG4976         188 RFDLIVA----------------------ADVLPYLGAL-EGLFAG-----------AAGLLAPGGLFAFSVETLPD  230 (287)
T ss_pred             cccchhh----------------------hhHHHhhcch-hhHHHH-----------HHHhcCCCceEEEEecccCC
Confidence            8999874                      1222222222 455555           89999999999999655433

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.98  E-value=8.6e-05  Score=66.27  Aligned_cols=118  Identities=20%  Similarity=0.213  Sum_probs=87.3

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      +..++++.|.-||++|.|+|-+|-.+.+.......++++|.|++-...+.+..     ..+.++++|+..+.+      .
T Consensus        41 ~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~------~  109 (194)
T COG3963          41 ASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRT------T  109 (194)
T ss_pred             HhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHH------H
Confidence            34567888999999999999999999998767788999999999999887643     345688888876631      1


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                      ...+....||.|++-.|               .++++-+.      -.++|+.           +...|..||.+|--|.
T Consensus       110 l~e~~gq~~D~viS~lP---------------ll~~P~~~------~iaile~-----------~~~rl~~gg~lvqftY  157 (194)
T COG3963         110 LGEHKGQFFDSVISGLP---------------LLNFPMHR------RIAILES-----------LLYRLPAGGPLVQFTY  157 (194)
T ss_pred             HhhcCCCeeeeEEeccc---------------cccCcHHH------HHHHHHH-----------HHHhcCCCCeEEEEEe
Confidence            22345567999998666               12221111      1467777           8888999999998877


Q ss_pred             C
Q psy17793        238 S  238 (397)
Q Consensus       238 S  238 (397)
                      +
T Consensus       158 g  158 (194)
T COG3963         158 G  158 (194)
T ss_pred             c
Confidence            6

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.97  E-value=3.7e-05  Score=73.34  Aligned_cols=94  Identities=20%  Similarity=0.199  Sum_probs=66.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      ...++||+|||-|+.|..++...   .+|+|.|.|+.|...+++    -|.+   ++..  .++..           .+.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~----kg~~---vl~~--~~w~~-----------~~~  150 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSK----KGFT---VLDI--DDWQQ-----------TDF  150 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHh----CCCe---EEeh--hhhhc-----------cCC
Confidence            35689999999999999999976   469999999998666544    4553   2222  22210           235


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      +||+|.|                      -..+.+.... ..+|+.           +.+.|+|+|+++.+
T Consensus       151 ~fDvIsc----------------------LNvLDRc~~P-~~LL~~-----------i~~~l~p~G~lilA  187 (265)
T PF05219_consen  151 KFDVISC----------------------LNVLDRCDRP-LTLLRD-----------IRRALKPNGRLILA  187 (265)
T ss_pred             ceEEEee----------------------hhhhhccCCH-HHHHHH-----------HHHHhCCCCEEEEE
Confidence            7999987                      1333333332 678888           89999999999987

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.96  E-value=2.4e-05  Score=73.50  Aligned_cols=77  Identities=21%  Similarity=0.223  Sum_probs=56.4

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH------------hCCCcEEEEEcccccc
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKK------------LQLSSIQTHVYDSTRI  148 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~------------~g~~~v~~~~~D~~~~  148 (397)
                      +...++.+||+.|||.|.-...+|+.   +-.|+|+|+|+.+++.+.+....            ....+|++.++|+..+
T Consensus        33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l  109 (218)
T PF05724_consen   33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL  109 (218)
T ss_dssp             HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred             cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence            34677889999999999999999984   56899999999999998432211            1123588999999887


Q ss_pred             cccchhhHHHhhhcccCccEEE
Q psy17793        149 NTSSQIDIERMKLQKESFDRIL  170 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il  170 (397)
                      ...          ..++||.|.
T Consensus       110 ~~~----------~~g~fD~iy  121 (218)
T PF05724_consen  110 PPE----------DVGKFDLIY  121 (218)
T ss_dssp             GGS----------CHHSEEEEE
T ss_pred             Chh----------hcCCceEEE
Confidence            422          235799997

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.95  E-value=7.6e-05  Score=70.64  Aligned_cols=112  Identities=19%  Similarity=0.141  Sum_probs=83.0

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      ...+..+..+|+|+|.|.|..+..++... +..+++.+|. |..++.+++      .++|++..+|+...          
T Consensus        94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~----------  155 (241)
T PF00891_consen   94 EAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDP----------  155 (241)
T ss_dssp             HHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTC----------
T ss_pred             ccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc------ccccccccccHHhh----------
Confidence            34456667799999999999999999885 5679999998 888888877      56899999999832          


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC--cEEEEEe
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD--GILVYCT  236 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg--G~lvysT  236 (397)
                        ++ . +|+|++          ..+.+.|+    ++..       .+||++           +.+.|+||  |+|+...
T Consensus       156 --~P-~-~D~~~l----------~~vLh~~~----d~~~-------~~iL~~-----------~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  156 --LP-V-ADVYLL----------RHVLHDWS----DEDC-------VKILRN-----------AAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             --CS-S-ESEEEE----------ESSGGGS-----HHHH-------HHHHHH-----------HHHHSEECTTEEEEEEE
T ss_pred             --hc-c-ccceee----------ehhhhhcc----hHHH-------HHHHHH-----------HHHHhCCCCCCeEEEEe
Confidence              23 3 999998          35556666    3443       678888           99999999  9998886


Q ss_pred             cCCCcccc
Q psy17793        237 CSLSVEEN  244 (397)
Q Consensus       237 CS~~~eEn  244 (397)
                      .-+.....
T Consensus       200 ~~~~~~~~  207 (241)
T PF00891_consen  200 MVLPDDRT  207 (241)
T ss_dssp             EEECSSSS
T ss_pred             eccCCCCC
Confidence            65444333

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.93  E-value=0.0002  Score=69.41  Aligned_cols=130  Identities=18%  Similarity=0.205  Sum_probs=90.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcE-EEEEcccccccccchhhHHHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMND-TGTLIALDKSKPRVTKLEETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~-~~~V~avD~s~~rl~~l~~n~~~~g~~~v-~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .-+|||++||+|.--+-+...... ...|.-.|.|+.-++..++.++..|+.+| ++.++|+.+...-        .-..
T Consensus       136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l--------~~l~  207 (311)
T PF12147_consen  136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSL--------AALD  207 (311)
T ss_pred             ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHh--------hccC
Confidence            348999999999998877765443 36899999999999999999999999986 9999999765211        0112


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccc
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE  243 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eE  243 (397)
                      ...+++++    |  |.    ..-..  + .+.+       +..|..           ....+.|||+|+|..-.+||. 
T Consensus       208 p~P~l~iV----s--GL----~ElF~--D-n~lv-------~~sl~g-----------l~~al~pgG~lIyTgQPwHPQ-  255 (311)
T PF12147_consen  208 PAPTLAIV----S--GL----YELFP--D-NDLV-------RRSLAG-----------LARALEPGGYLIYTGQPWHPQ-  255 (311)
T ss_pred             CCCCEEEE----e--cc----hhhCC--c-HHHH-------HHHHHH-----------HHHHhCCCcEEEEcCCCCCcc-
Confidence            34688887    2  21    00000  0 1112       333444           677899999999976566763 


Q ss_pred             cHHHHHHHHHHCC
Q psy17793        244 NEAVIAWILHRHP  256 (397)
Q Consensus       244 nE~vV~~~L~~~~  256 (397)
                      . +.|.++|..|.
T Consensus       256 l-e~IAr~LtsHr  267 (311)
T PF12147_consen  256 L-EMIARVLTSHR  267 (311)
T ss_pred             h-HHHHHHHhccc
Confidence            3 37888998885

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.93  E-value=0.00029  Score=65.55  Aligned_cols=120  Identities=21%  Similarity=0.266  Sum_probs=83.1

Q ss_pred             EEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcccCcc
Q psy17793         89 VLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFD  167 (397)
Q Consensus        89 VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD  167 (397)
                      |.|+||--|.....|++. +...+++|+|+++.-++.++++++++|+.+ |+++.+|......           +.+..|
T Consensus         1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-----------~~e~~d   68 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-----------PGEDVD   68 (205)
T ss_dssp             EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-------------GGG---
T ss_pred             CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-----------CCCCCC
Confidence            689999999999999884 234579999999999999999999999765 9999999876531           222378


Q ss_pred             EEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHH
Q psy17793        168 RILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV  247 (397)
Q Consensus       168 ~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~v  247 (397)
                      .|+.    +|.|              -.       +-.+||++           ....++....|+..     |.-+...
T Consensus        69 ~ivI----AGMG--------------G~-------lI~~ILe~-----------~~~~~~~~~~lILq-----P~~~~~~  107 (205)
T PF04816_consen   69 TIVI----AGMG--------------GE-------LIIEILEA-----------GPEKLSSAKRLILQ-----PNTHAYE  107 (205)
T ss_dssp             EEEE----EEE---------------HH-------HHHHHHHH-----------TGGGGTT--EEEEE-----ESS-HHH
T ss_pred             EEEE----ecCC--------------HH-------HHHHHHHh-----------hHHHhccCCeEEEe-----CCCChHH
Confidence            8776    2333              11       12678888           66666666677764     4557778


Q ss_pred             HHHHHHHCCCcEEEe
Q psy17793        248 IAWILHRHPEVELVQ  262 (397)
Q Consensus       248 V~~~L~~~~~~~l~~  262 (397)
                      ++.+|.++ +|.++.
T Consensus       108 LR~~L~~~-gf~I~~  121 (205)
T PF04816_consen  108 LRRWLYEN-GFEIID  121 (205)
T ss_dssp             HHHHHHHT-TEEEEE
T ss_pred             HHHHHHHC-CCEEEE
Confidence            99999988 687765

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.89  E-value=3.9e-05  Score=68.44  Aligned_cols=80  Identities=11%  Similarity=0.119  Sum_probs=58.0

Q ss_pred             EEEeCCHHHHHHHHHHHHHhC---CCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCc
Q psy17793        114 IALDKSKPRVTKLEETIKKLQ---LSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSF  190 (397)
Q Consensus       114 ~avD~s~~rl~~l~~n~~~~g---~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~  190 (397)
                      +|+|+|+.+++.++++.+..+   ..+|+++.+|+.++.           +..++||.|++.                  
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-----------~~~~~fD~v~~~------------------   51 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-----------FDDCEFDAVTMG------------------   51 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-----------CCCCCeeEEEec------------------
Confidence            489999999999987765432   357999999998763           456789999961                  


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        191 LNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       191 ~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                          ..+..+.+. .+.|++           +.++|||||.++....+
T Consensus        52 ----~~l~~~~d~-~~~l~e-----------i~rvLkpGG~l~i~d~~   83 (160)
T PLN02232         52 ----YGLRNVVDR-LRAMKE-----------MYRVLKPGSRVSILDFN   83 (160)
T ss_pred             ----chhhcCCCH-HHHHHH-----------HHHHcCcCeEEEEEECC
Confidence                111111122 567788           99999999999887554

>KOG0820|consensus

Probab=97.87  E-value=6.1e-05  Score=72.02  Aligned_cols=82  Identities=20%  Similarity=0.252  Sum_probs=68.3

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhH
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~  156 (397)
                      +.-.++++++.||++|-|||+.|..+.+.   +.+|+|+|+|+.++..+.++.+-....+ .+++.+|+.+..       
T Consensus        51 ~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d-------  120 (315)
T KOG0820|consen   51 VEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD-------  120 (315)
T ss_pred             HhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC-------
Confidence            34456789999999999999999988884   5799999999999999999887554433 899999998762       


Q ss_pred             HHhhhcccCccEEEEcCCC
Q psy17793        157 ERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPC  175 (397)
                            ...||.++.|-|+
T Consensus       121 ------~P~fd~cVsNlPy  133 (315)
T KOG0820|consen  121 ------LPRFDGCVSNLPY  133 (315)
T ss_pred             ------CcccceeeccCCc
Confidence                  2369999999886

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.86  E-value=1.9e-05  Score=64.99  Aligned_cols=101  Identities=24%  Similarity=0.327  Sum_probs=42.3

Q ss_pred             EEEcCCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793         90 LDMCAAPGNKLTHIALLMNDTG--TLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQKESF  166 (397)
Q Consensus        90 LDlcagpG~kt~~lA~~~~~~~--~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f  166 (397)
                      |++|++.|..|..+++.+...+  +++++|..+. .+..++.+++.++. +++++.+|+.....         .+..++|
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~---------~~~~~~~   70 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLP---------SLPDGPI   70 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHH---------HHHH--E
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHH---------HcCCCCE
Confidence            6889999999999998775554  7999999996 44455566656664 59999999876532         2334689


Q ss_pred             cEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        167 DRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       167 D~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      |.|++|..                 +..+..       ..-+..           +.+.|+|||.+++-
T Consensus        71 dli~iDg~-----------------H~~~~~-------~~dl~~-----------~~~~l~~ggviv~d  104 (106)
T PF13578_consen   71 DLIFIDGD-----------------HSYEAV-------LRDLEN-----------ALPRLAPGGVIVFD  104 (106)
T ss_dssp             EEEEEES--------------------HHHH-------HHHHHH-----------HGGGEEEEEEEEEE
T ss_pred             EEEEECCC-----------------CCHHHH-------HHHHHH-----------HHHHcCCCeEEEEe
Confidence            99999986                 001111       334555           88899999999874

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.85  E-value=4e-05  Score=76.19  Aligned_cols=77  Identities=19%  Similarity=0.192  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES  165 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~  165 (397)
                      ..+|+|.-+|+|.-++.+|.-.+.. +|+.+|+||.+.+.+++|++.+...+..+++.|+..+...          ....
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~----------~~~~  121 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE----------LHRA  121 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh----------cCCC
Confidence            6799999999999999999876443 8999999999999999999999666777777888766422          2368


Q ss_pred             ccEEEEcC
Q psy17793        166 FDRILLDA  173 (397)
Q Consensus       166 fD~Il~Dp  173 (397)
                      ||+|=+||
T Consensus       122 fd~IDiDP  129 (380)
T COG1867         122 FDVIDIDP  129 (380)
T ss_pred             ccEEecCC
Confidence            99999999

>KOG1975|consensus

Probab=97.78  E-value=0.00018  Score=70.38  Aligned_cols=137  Identities=19%  Similarity=0.246  Sum_probs=89.3

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC--C----cEEEEEccccc
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL--S----SIQTHVYDSTR  147 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~--~----~v~~~~~D~~~  147 (397)
                      |+|+-...  ++++.++|||||-||-.+-.-.  .+-+.++++||....++.++++.+.+.-  +    .+.++++|.+.
T Consensus       108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~k--AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~  183 (389)
T KOG1975|consen  108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDK--AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK  183 (389)
T ss_pred             HHHHHHHh--ccccccceeccCCcccHhHhhh--hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence            55554443  6788999999999998875544  3557899999999999999988876532  1    26788888764


Q ss_pred             ccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793        148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK  227 (397)
Q Consensus       148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk  227 (397)
                      -...   |  ..++...+||+|-|           .+..+.+|.    .-++    -+.+|.+           +.+.||
T Consensus       184 ~~l~---d--~~e~~dp~fDivSc-----------QF~~HYaFe----tee~----ar~~l~N-----------va~~Lk  228 (389)
T KOG1975|consen  184 ERLM---D--LLEFKDPRFDIVSC-----------QFAFHYAFE----TEES----ARIALRN-----------VAKCLK  228 (389)
T ss_pred             hHHH---H--hccCCCCCcceeee-----------eeeEeeeec----cHHH----HHHHHHH-----------HHhhcC
Confidence            3210   1  01123344999876           333344321    1111    1677888           999999


Q ss_pred             CCcEEEEEecCCCccccHHHHHHHHHHC
Q psy17793        228 KDGILVYCTCSLSVEENEAVIAWILHRH  255 (397)
Q Consensus       228 pgG~lvysTCS~~~eEnE~vV~~~L~~~  255 (397)
                      |||.++=.      --|.++|-+=|+..
T Consensus       229 pGG~FIgT------iPdsd~Ii~rlr~~  250 (389)
T KOG1975|consen  229 PGGVFIGT------IPDSDVIIKRLRAG  250 (389)
T ss_pred             CCcEEEEe------cCcHHHHHHHHHhc
Confidence            99999864      23455665555543

>KOG3010|consensus

Probab=97.72  E-value=0.00012  Score=68.88  Aligned_cols=133  Identities=14%  Similarity=0.087  Sum_probs=75.1

Q ss_pred             HHHHHhccCCCCCC-eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEccccccccc
Q psy17793         74 SILAGHYLDVQPGQ-KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTS  151 (397)
Q Consensus        74 S~l~~~~L~~~~g~-~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~  151 (397)
                      +-+...+....++. .++|+|||+|-.+..+|..   -.+|+|+|+|+.+++.+++.-.-.-. ........+...+.  
T Consensus        21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~---~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~--   95 (261)
T KOG3010|consen   21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEH---YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL--   95 (261)
T ss_pred             HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHh---hhhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc--
Confidence            44444555555666 7899999999555556664   24799999999999977653211100 01122222222221  


Q ss_pred             chhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcE
Q psy17793        152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI  231 (397)
Q Consensus       152 ~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~  231 (397)
                               -.++++|+|++                      .+.+. +-++ .++.+.           +.++||+.|-
T Consensus        96 ---------g~e~SVDlI~~----------------------Aqa~H-WFdl-e~fy~~-----------~~rvLRk~Gg  131 (261)
T KOG3010|consen   96 ---------GGEESVDLITA----------------------AQAVH-WFDL-ERFYKE-----------AYRVLRKDGG  131 (261)
T ss_pred             ---------CCCcceeeehh----------------------hhhHH-hhch-HHHHHH-----------HHHHcCCCCC
Confidence                     12578999987                      12221 1122 455556           8899988773


Q ss_pred             EEEEecCC-CccccHHHHHHHHHHC
Q psy17793        232 LVYCTCSL-SVEENEAVIAWILHRH  255 (397)
Q Consensus       232 lvysTCS~-~~eEnE~vV~~~L~~~  255 (397)
                      ++-.-|-. ...-+.++..-+++.+
T Consensus       132 ~iavW~Y~dd~v~~pE~dsv~~r~~  156 (261)
T KOG3010|consen  132 LIAVWNYNDDFVDWPEFDSVMLRLY  156 (261)
T ss_pred             EEEEEEccCCCcCCHHHHHHHHHHh
Confidence            33333333 4455666665555544

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.71  E-value=5.4e-05  Score=71.60  Aligned_cols=40  Identities=13%  Similarity=0.131  Sum_probs=34.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHH
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTK  125 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~  125 (397)
                      .+|..|||+|||||++|..++..  +..+|+|+|+++.++..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHH
Confidence            36789999999999999999884  46789999999977664

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG1500|consensus

Probab=97.70  E-value=0.00021  Score=70.08  Aligned_cols=75  Identities=19%  Similarity=0.131  Sum_probs=59.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .|..|||+|||+|..+...|..  +..+|+|+|.| ++.+.++..++.+.+. +|.++.+...++.            .+
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie------------LP  241 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE------------LP  241 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc------------Cc
Confidence            4779999999999999877764  67899999975 5788888888888764 4888777766552            35


Q ss_pred             cCccEEEEcCC
Q psy17793        164 ESFDRILLDAP  174 (397)
Q Consensus       164 ~~fD~Il~DpP  174 (397)
                      +++|+|+..|-
T Consensus       242 Ek~DviISEPM  252 (517)
T KOG1500|consen  242 EKVDVIISEPM  252 (517)
T ss_pred             hhccEEEeccc
Confidence            78999998774

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.69  E-value=0.00017  Score=69.51  Aligned_cols=98  Identities=16%  Similarity=0.148  Sum_probs=73.0

Q ss_pred             CcEEEechh-HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc
Q psy17793         65 SMGILQNLP-SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY  143 (397)
Q Consensus        65 g~~~~Qd~~-S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~  143 (397)
                      |.-++.|+. ..-++..+++.+++.|||+|+|+|..|..++...   .+|+++|+|+..++.+++...  .-++++++.+
T Consensus         9 gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~   83 (262)
T PF00398_consen    9 GQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVING   83 (262)
T ss_dssp             TSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES
T ss_pred             CcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeec
Confidence            333444443 3445667788899999999999999999999863   799999999999999998766  3467999999


Q ss_pred             ccccccccchhhHHHhhhcccCccEEEEcCCC
Q psy17793        144 DSTRINTSSQIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                      |+..+...        .........|+.+.|+
T Consensus        84 D~l~~~~~--------~~~~~~~~~vv~NlPy  107 (262)
T PF00398_consen   84 DFLKWDLY--------DLLKNQPLLVVGNLPY  107 (262)
T ss_dssp             -TTTSCGG--------GHCSSSEEEEEEEETG
T ss_pred             chhccccH--------HhhcCCceEEEEEecc
Confidence            99987421        0112355788888883

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.65  E-value=0.00015  Score=63.35  Aligned_cols=115  Identities=17%  Similarity=0.229  Sum_probs=70.1

Q ss_pred             EEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcc-cCccEEEEcCCCCCCCCCcccccccC
Q psy17793        112 TLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQK-ESFDRILLDAPCSGFGQRPMFYNANS  189 (397)
Q Consensus       112 ~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~-~~fD~Il~DpPCSg~G~~p~~~~~~s  189 (397)
                      +|+|+|+.+++++..++++++.++.+ |+++..+-..+..          +.+ +++|.++.|     .|..|.......
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~----------~i~~~~v~~~iFN-----LGYLPggDk~i~   65 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDE----------YIPEGPVDAAIFN-----LGYLPGGDKSIT   65 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGG----------T--S--EEEEEEE-----ESB-CTS-TTSB
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHh----------hCccCCcCEEEEE-----CCcCCCCCCCCC
Confidence            59999999999999999999999854 8888877666532          223 479999874     454444332222


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc--ccHHHHHHHHHHCC--CcEEE
Q psy17793        190 FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE--ENEAVIAWILHRHP--EVELV  261 (397)
Q Consensus       190 ~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e--EnE~vV~~~L~~~~--~~~l~  261 (397)
                          ...     +.-...|+.           ++++|++||.++.....-|+.  |..+.|..+++..+  .|...
T Consensus        66 ----T~~-----~TTl~Al~~-----------al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~  121 (140)
T PF06962_consen   66 ----TKP-----ETTLKALEA-----------ALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVL  121 (140)
T ss_dssp             ------H-----HHHHHHHHH-----------HHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEE
T ss_pred             ----cCc-----HHHHHHHHH-----------HHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEE
Confidence                111     111445566           899999999999887777763  33345666776654  34443

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG1253|consensus

Probab=97.64  E-value=3e-05  Score=79.46  Aligned_cols=109  Identities=20%  Similarity=0.327  Sum_probs=85.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .++-+|||+-+|+|.-++..|..+++-..|+|+|.++..++..++|++.++.++ ++....|+..+...       .+..
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~-------~~~~  180 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYE-------HPMV  180 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHh-------cccc
Confidence            456699999999999999999999888899999999999999999999998876 77778888665311       0112


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      ...||+|=+||=  |              ..           ..+|+.           |++.++.||.| +.|||
T Consensus       181 ~~~FDvIDLDPy--G--------------s~-----------s~FLDs-----------Avqav~~gGLL-~vT~T  217 (525)
T KOG1253|consen  181 AKFFDVIDLDPY--G--------------SP-----------SPFLDS-----------AVQAVRDGGLL-CVTCT  217 (525)
T ss_pred             ccccceEecCCC--C--------------Cc-----------cHHHHH-----------HHHHhhcCCEE-EEEec
Confidence            368999999993  1              11           335666           88888888876 45776

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.63  E-value=0.00013  Score=71.07  Aligned_cols=115  Identities=17%  Similarity=0.262  Sum_probs=84.7

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEEcccccccccchhhHH
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ----LSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g----~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      .+.+ .+||=+|-|.|+.+-.++... +-.+++.||+|++-++.+++-+....    -++++++..|+.++...      
T Consensus        74 h~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~------  145 (282)
T COG0421          74 HPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD------  145 (282)
T ss_pred             CCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh------
Confidence            3455 599999999999999888864 35789999999999999999887665    24689999999988643      


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                          ...+||+|++|--      .| ...       .+.+     .+.+..+.           ..+.|+++|.++.-+=
T Consensus       146 ----~~~~fDvIi~D~t------dp-~gp-------~~~L-----ft~eFy~~-----------~~~~L~~~Gi~v~q~~  191 (282)
T COG0421         146 ----CEEKFDVIIVDST------DP-VGP-------AEAL-----FTEEFYEG-----------CRRALKEDGIFVAQAG  191 (282)
T ss_pred             ----CCCcCCEEEEcCC------CC-CCc-------cccc-----CCHHHHHH-----------HHHhcCCCcEEEEecC
Confidence                2347999999853      11 000       0111     12455666           8889999999998754


Q ss_pred             C
Q psy17793        238 S  238 (397)
Q Consensus       238 S  238 (397)
                      |
T Consensus       192 ~  192 (282)
T COG0421         192 S  192 (282)
T ss_pred             C
Confidence            4

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.59  E-value=0.00024  Score=61.27  Aligned_cols=59  Identities=22%  Similarity=0.162  Sum_probs=51.4

Q ss_pred             eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccc
Q psy17793         88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTR  147 (397)
Q Consensus        88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~  147 (397)
                      .|||+||+.|..+..++... +.++|+++|.++..++.++++++.+++.++.++......
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            48999999999999888764 456999999999999999999999998888888776653

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.59  E-value=0.00051  Score=63.63  Aligned_cols=137  Identities=23%  Similarity=0.294  Sum_probs=89.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE-EEEEcccccccccchhhHHHhhhccc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI-QTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v-~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      +.+||+++||+|-.+.++|..+. .-+-.-.|.++..+..++..+...+++|+ ..+..|+....-..   .........
T Consensus        26 ~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~---~~~~~~~~~  101 (204)
T PF06080_consen   26 GTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW---ELPAPLSPE  101 (204)
T ss_pred             CceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc---ccccccCCC
Confidence            33699999999999999999984 56788899999999999999999998874 34556665431000   000011346


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE-EEEecC----C
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL-VYCTCS----L  239 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l-vysTCS----~  239 (397)
                      .||.|++    .               |+ -.+...... ..+++.           +.++|++||.| +|---.    +
T Consensus       102 ~~D~i~~----~---------------N~-lHI~p~~~~-~~lf~~-----------a~~~L~~gG~L~~YGPF~~~G~~  149 (204)
T PF06080_consen  102 SFDAIFC----I---------------NM-LHISPWSAV-EGLFAG-----------AARLLKPGGLLFLYGPFNRDGKF  149 (204)
T ss_pred             Ccceeee----h---------------hH-HHhcCHHHH-HHHHHH-----------HHHhCCCCCEEEEeCCcccCCEe
Confidence            8999996    0               11 223333333 567777           99999999986 554333    3


Q ss_pred             CccccHHHHHHHHHHCCCc
Q psy17793        240 SVEENEAVIAWILHRHPEV  258 (397)
Q Consensus       240 ~~eEnE~vV~~~L~~~~~~  258 (397)
                      +++-|++-=+++-.+.|++
T Consensus       150 ts~SN~~FD~sLr~rdp~~  168 (204)
T PF06080_consen  150 TSESNAAFDASLRSRDPEW  168 (204)
T ss_pred             CCcHHHHHHHHHhcCCCCc
Confidence            3455664444444444433

The function of this family is unknown.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.57  E-value=0.0011  Score=61.65  Aligned_cols=89  Identities=13%  Similarity=0.157  Sum_probs=54.1

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH-------HhCC--CcEEEEEccccccc
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIK-------KLQL--SSIQTHVYDSTRIN  149 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~-------~~g~--~~v~~~~~D~~~~~  149 (397)
                      ..+++.+++.++|+|||.|...+++|... +-.+.+|+|+.+...+.++.+.+       .+|.  ..+.+..+|+.+..
T Consensus        36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~  114 (205)
T PF08123_consen   36 DELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD  114 (205)
T ss_dssp             HHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred             HHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence            45678899999999999999988888665 45679999999999887765443       3344  34788888876542


Q ss_pred             ccchhhHHHhhhcccCccEEEEcCCCC
Q psy17793        150 TSSQIDIERMKLQKESFDRILLDAPCS  176 (397)
Q Consensus       150 ~~~~~d~~~~~~~~~~fD~Il~DpPCS  176 (397)
                            .....+  ..-|+|++|-=|.
T Consensus       115 ------~~~~~~--s~AdvVf~Nn~~F  133 (205)
T PF08123_consen  115 ------FVKDIW--SDADVVFVNNTCF  133 (205)
T ss_dssp             ------HHHHHG--HC-SEEEE--TTT
T ss_pred             ------hHhhhh--cCCCEEEEecccc
Confidence                  000111  3579999976553

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG3115|consensus

Probab=97.56  E-value=0.00051  Score=63.23  Aligned_cols=140  Identities=18%  Similarity=0.239  Sum_probs=91.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-------CCcEEEEEcccccccccchhhHHH
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-------LSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-------~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      .-.+.|+|||=||....++.+. +...|.|.||--+-.+..+++++.++       ..|+.+...++......       
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn-------  132 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPN-------  132 (249)
T ss_pred             cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccc-------
Confidence            3479999999999999999886 56789999999888899999998886       56788888887766422       


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                       -|..+..+.++.=-|      +|....+..         ...-++..++.+           -.-+|++||.++++|--
T Consensus       133 -~f~kgqLskmff~fp------dpHfk~~kh---------k~rii~~~l~~e-----------yay~l~~gg~~ytitDv  185 (249)
T KOG3115|consen  133 -FFEKGQLSKMFFLFP------DPHFKARKH---------KWRIITSTLLSE-----------YAYVLREGGILYTITDV  185 (249)
T ss_pred             -hhhhcccccceeecC------ChhHhhhhc---------cceeechhHHHH-----------HHhhhhcCceEEEEeeH
Confidence             022222222221011      233322221         111133556666           67789999999988643


Q ss_pred             CCccccHHHHHHHHHHCCCcEEEec
Q psy17793        239 LSVEENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       239 ~~~eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                         +|--+.....+++||-++....
T Consensus       186 ---~elh~wm~~~~e~hplfe~lt~  207 (249)
T KOG3115|consen  186 ---KELHEWMVKHLEEHPLFERLTE  207 (249)
T ss_pred             ---HHHHHHHHHHHHhCcHhhhcch
Confidence               4444455567788886665543

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.53  E-value=0.00026  Score=70.35  Aligned_cols=72  Identities=17%  Similarity=0.299  Sum_probs=53.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      +.+|.++||+||+|||+|-.+++.   +.+|+|||..+     +...+.  .-.+|+....|...+..           .
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~--~~~~V~h~~~d~fr~~p-----------~  267 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLM--DTGQVEHLRADGFKFRP-----------P  267 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-----cCHhhh--CCCCEEEEeccCcccCC-----------C
Confidence            368999999999999999999885   45999999554     222222  22468888888876631           1


Q ss_pred             ccCccEEEEcCCC
Q psy17793        163 KESFDRILLDAPC  175 (397)
Q Consensus       163 ~~~fD~Il~DpPC  175 (397)
                      .+.+|.|++|.-|
T Consensus       268 ~~~vDwvVcDmve  280 (357)
T PRK11760        268 RKNVDWLVCDMVE  280 (357)
T ss_pred             CCCCCEEEEeccc
Confidence            4689999999864

>KOG2361|consensus

Probab=97.50  E-value=0.00013  Score=68.83  Aligned_cols=111  Identities=19%  Similarity=0.208  Sum_probs=73.8

Q ss_pred             eEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793         88 KVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF  166 (397)
Q Consensus        88 ~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f  166 (397)
                      +||++|||.|+...-+.+-.+ ++-.|+|+|-|+.+++.++++....- +++.....|++.-.       ...+...+++
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~-------~~~~~~~~sv  145 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPS-------LKEPPEEGSV  145 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchh-------ccCCCCcCcc
Confidence            799999999999987776533 24789999999999999998866543 44666666665431       0112345778


Q ss_pred             cEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        167 DRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       167 D~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      |.|.+             ....|-.. ++..       ...+.+           ..++|||||.|++...-
T Consensus       146 D~it~-------------IFvLSAi~-pek~-------~~a~~n-----------l~~llKPGG~llfrDYg  185 (264)
T KOG2361|consen  146 DIITL-------------IFVLSAIH-PEKM-------QSVIKN-----------LRTLLKPGGSLLFRDYG  185 (264)
T ss_pred             ceEEE-------------EEEEeccC-hHHH-------HHHHHH-----------HHHHhCCCcEEEEeecc
Confidence            87765             12222011 1222       344556           78899999999987443

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.48  E-value=0.00019  Score=69.71  Aligned_cols=75  Identities=19%  Similarity=0.212  Sum_probs=55.8

Q ss_pred             eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCcc
Q psy17793         88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFD  167 (397)
Q Consensus        88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD  167 (397)
                      +|+|++||.|+.+.-+...  +-..|+|+|+++.+++..+.|....      ++..|..++...        .. ...+|
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~--------~~-~~~~D   64 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEK--------DF-IPDID   64 (275)
T ss_pred             cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchh--------hc-CCCCC
Confidence            6899999999998766653  3456899999999999998876421      456677665311        01 34699


Q ss_pred             EEEEcCCCCCCC
Q psy17793        168 RILLDAPCSGFG  179 (397)
Q Consensus       168 ~Il~DpPCSg~G  179 (397)
                      +|+.+|||-+..
T Consensus        65 ~l~~gpPCq~fS   76 (275)
T cd00315          65 LLTGGFPCQPFS   76 (275)
T ss_pred             EEEeCCCChhhh
Confidence            999999997654

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG1098|consensus

Probab=97.39  E-value=0.00052  Score=72.00  Aligned_cols=131  Identities=22%  Similarity=0.204  Sum_probs=78.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ++++..|||+|||||++....++.|+-++.|+|+|+-|-.           -+.++..+..|.+.-.   +.........
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~c~t~v~dIttd~---cr~~l~k~l~  107 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPNCDTLVEDITTDE---CRSKLRKILK  107 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCccchhhhhhhHHH---HHHHHHHHHH
Confidence            4678899999999999999999999888999999997643           2345555555554321   0000001112


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE  242 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e  242 (397)
                      .-..|+||-|--       |.....|.    ..     +..|..|--+||+.       |...|..||.+|--   +.+-
T Consensus       108 t~~advVLhDga-------pnVg~~w~----~D-----A~~q~~L~l~al~L-------A~~~l~~~g~fvtk---vfrs  161 (780)
T KOG1098|consen  108 TWKADVVLHDGA-------PNVGGNWV----QD-----AFQQACLTLRALKL-------ATEFLAKGGTFVTK---VFRS  161 (780)
T ss_pred             hCCCcEEeecCC-------CccchhHH----HH-----HHHhhHHHHHHHHH-------HHHHHHhcCccccc---cccC
Confidence            235699998853       34433443    11     22333333333433       88899999997654   3334


Q ss_pred             ccHHHHHHHHH
Q psy17793        243 ENEAVIAWILH  253 (397)
Q Consensus       243 EnE~vV~~~L~  253 (397)
                      +.-.-+.|++.
T Consensus       162 ~dy~~ll~v~~  172 (780)
T KOG1098|consen  162 EDYNGLLRVFG  172 (780)
T ss_pred             CcchHHHHHHH
Confidence            44334445444

>PRK04148 hypothetical protein; Provisional

Probab=97.37  E-value=0.0027  Score=55.14  Aligned_cols=73  Identities=12%  Similarity=0.054  Sum_probs=52.5

Q ss_pred             hccCCCCCCeEEEEcCCCCh-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGN-KLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~-kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ..+....+.+|||+|+|+|. .+..+++   .+..|+|+|+++.+++.++++    +   +.++..|.++....      
T Consensus        10 ~~~~~~~~~kileIG~GfG~~vA~~L~~---~G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~p~~~------   73 (134)
T PRK04148         10 ENYEKGKNKKIVELGIGFYFKVAKKLKE---SGFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFNPNLE------   73 (134)
T ss_pred             HhcccccCCEEEEEEecCCHHHHHHHHH---CCCEEEEEECCHHHHHHHHHh----C---CeEEECcCCCCCHH------
Confidence            34444456899999999996 6666665   356999999999988877664    3   56788888765311      


Q ss_pred             HhhhcccCccEEEE
Q psy17793        158 RMKLQKESFDRILL  171 (397)
Q Consensus       158 ~~~~~~~~fD~Il~  171 (397)
                          .-+.+|+|..
T Consensus        74 ----~y~~a~liys   83 (134)
T PRK04148         74 ----IYKNAKLIYS   83 (134)
T ss_pred             ----HHhcCCEEEE
Confidence                1256899984

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.37  E-value=0.00056  Score=64.72  Aligned_cols=87  Identities=25%  Similarity=0.281  Sum_probs=58.1

Q ss_pred             HHHHhccCCCCCC--eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC----C-----CcEEEEEc
Q psy17793         75 ILAGHYLDVQPGQ--KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ----L-----SSIQTHVY  143 (397)
Q Consensus        75 ~l~~~~L~~~~g~--~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g----~-----~~v~~~~~  143 (397)
                      ..++.+..+++|.  +|||+.+|-|.-++.+|.+   +++|+++|.||-....++.-++++.    .     .+|+++.+
T Consensus        63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~  139 (234)
T PF04445_consen   63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG  139 (234)
T ss_dssp             SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred             cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence            3455667667664  9999999999999988874   4689999999999988887776652    1     25999999


Q ss_pred             ccccccccchhhHHHhhhcccCccEEEEcCC
Q psy17793        144 DSTRINTSSQIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                      |+..++.          ....+||+|.+||-
T Consensus       140 d~~~~L~----------~~~~s~DVVY~DPM  160 (234)
T PF04445_consen  140 DALEYLR----------QPDNSFDVVYFDPM  160 (234)
T ss_dssp             -CCCHCC----------CHSS--SEEEE--S
T ss_pred             CHHHHHh----------hcCCCCCEEEECCC
Confidence            9988753          24578999999996

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG1227|consensus

Probab=97.35  E-value=7.2e-05  Score=72.36  Aligned_cols=107  Identities=14%  Similarity=0.125  Sum_probs=75.0

Q ss_pred             cCCCcEEEechhHHHHH-----h---ccCC-CCCCeEEEEcCCCChHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy17793         62 LDSSMGILQNLPSILAG-----H---YLDV-QPGQKVLDMCAAPGNKLT-HIALLMNDTGTLIALDKSKPRVTKLEETIK  131 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~-----~---~L~~-~~g~~VLDlcagpG~kt~-~lA~~~~~~~~V~avD~s~~rl~~l~~n~~  131 (397)
                      ..+|..+.=|+.-++..     +   ++.. -.|+.|.||.||-|.+|+ .+..  .+...|+|+|.+|..++.|+++++
T Consensus       162 v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~--agAk~V~A~EwNp~svEaLrR~~~  239 (351)
T KOG1227|consen  162 VQNGITQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVT--AGAKTVFACEWNPWSVEALRRNAE  239 (351)
T ss_pred             hhcCeEEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhc--cCccEEEEEecCHHHHHHHHHHHH
Confidence            35676666676654421     1   1221 246899999999999998 4444  367799999999999999999999


Q ss_pred             HhCCCc-EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccC
Q psy17793        132 KLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANS  189 (397)
Q Consensus       132 ~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s  189 (397)
                      .+++.. ..++.+|-+..            .+....|+|.+       |..|.....|.
T Consensus       240 ~N~V~~r~~i~~gd~R~~------------~~~~~AdrVnL-------GLlPSse~~W~  279 (351)
T KOG1227|consen  240 ANNVMDRCRITEGDNRNP------------KPRLRADRVNL-------GLLPSSEQGWP  279 (351)
T ss_pred             hcchHHHHHhhhcccccc------------Cccccchheee-------ccccccccchH
Confidence            997643 34555665544            24467888876       66676666666

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.28  E-value=0.00029  Score=64.46  Aligned_cols=70  Identities=21%  Similarity=0.173  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      .|.+|||+|+|+|--++..|.  .+...|++.|+++.....++-|++.+|+ +|.+...|...              .+.
T Consensus        79 rgkrVLd~gagsgLvaIAaa~--aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--------------~~~  141 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAAR--AGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--------------SPP  141 (218)
T ss_pred             ccceeeecccccChHHHHHHH--hhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC--------------CCc
Confidence            588999999999998865544  4678899999999999999999999996 57777777643              345


Q ss_pred             CccEEEE
Q psy17793        165 SFDRILL  171 (397)
Q Consensus       165 ~fD~Il~  171 (397)
                      .||+||+
T Consensus       142 ~~Dl~La  148 (218)
T COG3897         142 AFDLLLA  148 (218)
T ss_pred             ceeEEEe
Confidence            7999997

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.20  E-value=0.00083  Score=65.69  Aligned_cols=106  Identities=20%  Similarity=0.243  Sum_probs=68.0

Q ss_pred             CeEEEEcCCCChHHHHHH----HHcC---CCcEEEEEeCCHHHHHHHHHHHH--------------Hh---------C--
Q psy17793         87 QKVLDMCAAPGNKLTHIA----LLMN---DTGTLIALDKSKPRVTKLEETIK--------------KL---------Q--  134 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA----~~~~---~~~~V~avD~s~~rl~~l~~n~~--------------~~---------g--  134 (397)
                      -+|+.+||++|-=.-.||    +..+   ...+|+|.|+|+..++.+++..-              ++         |  
T Consensus       117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~  196 (287)
T PRK10611        117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV  196 (287)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence            499999999995443333    3222   14679999999999999876521              00         0  


Q ss_pred             -C-----CcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHH-HHHHHHH
Q psy17793        135 -L-----SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY-ANIQKKL  207 (397)
Q Consensus       135 -~-----~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l-~~~Q~~l  207 (397)
                       +     +.|++...|.....          ....+.||+|+|                      ...+..+ .+.|.++
T Consensus       197 ~v~~~lr~~V~F~~~NL~~~~----------~~~~~~fD~I~c----------------------RNvliyF~~~~~~~v  244 (287)
T PRK10611        197 RVRQELANYVDFQQLNLLAKQ----------WAVPGPFDAIFC----------------------RNVMIYFDKTTQERI  244 (287)
T ss_pred             EEChHHHccCEEEcccCCCCC----------CccCCCcceeeH----------------------hhHHhcCCHHHHHHH
Confidence             0     12444455543310          012468999997                      1222222 3456889


Q ss_pred             HHHHhhhhccccccccccccCCcEEEEE
Q psy17793        208 LQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       208 L~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      ++.           ..+.|+|||.|+..
T Consensus       245 l~~-----------l~~~L~pgG~L~lG  261 (287)
T PRK10611        245 LRR-----------FVPLLKPDGLLFAG  261 (287)
T ss_pred             HHH-----------HHHHhCCCcEEEEe
Confidence            999           99999999999886

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.19  E-value=0.0016  Score=63.91  Aligned_cols=86  Identities=15%  Similarity=0.170  Sum_probs=50.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCc-EEEEEcccc-cccccchhhHHHhhhc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL-QLSS-IQTHVYDST-RINTSSQIDIERMKLQ  162 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~-g~~~-v~~~~~D~~-~~~~~~~~d~~~~~~~  162 (397)
                      .-++||+|+|.-..=-.|+..+ .+.+++|.|+|+..++.+++|++++ ++.+ |+++...-. .+...       ....
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~-------i~~~  174 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDG-------IIQP  174 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTT-------STT-
T ss_pred             ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchh-------hhcc
Confidence            3479999999887755555554 3689999999999999999999999 8864 877655322 22111       0012


Q ss_pred             ccCccEEEEcCCCCCCC
Q psy17793        163 KESFDRILLDAPCSGFG  179 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G  179 (397)
                      .+.||..+||||--.+.
T Consensus       175 ~e~~dftmCNPPFy~s~  191 (299)
T PF05971_consen  175 NERFDFTMCNPPFYSSQ  191 (299)
T ss_dssp             -S-EEEEEE-----SS-
T ss_pred             cceeeEEecCCccccCh
Confidence            35899999999986654

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.16  E-value=0.014  Score=54.35  Aligned_cols=63  Identities=21%  Similarity=0.242  Sum_probs=44.5

Q ss_pred             EechhHHHHHhccCCCCC---CeEEEEcCCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHH
Q psy17793         69 LQNLPSILAGHYLDVQPG---QKVLDMCAAPGNKLTHIALLMNDT-GTLIALDKSKPRVTKLEETIK  131 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g---~~VLDlcagpG~kt~~lA~~~~~~-~~V~avD~s~~rl~~l~~n~~  131 (397)
                      .-..+|-+....+...++   -.++|-|||.|...+.++-+-.+. ..|+|.|+|+..++.+++|+.
T Consensus        32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            445667666666554432   389999999999998777664322 469999999999998887775

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=97.15  E-value=0.0043  Score=59.69  Aligned_cols=79  Identities=16%  Similarity=0.249  Sum_probs=62.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      .|..|+=+|  ---.|...+++.+-..+|..+|+|..-+.-..+-++++|++||+.+..|.++..+.         ...+
T Consensus       152 ~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe---------~~~~  220 (354)
T COG1568         152 EGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPE---------DLKR  220 (354)
T ss_pred             CCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChH---------HHHh
Confidence            467788887  33444434445455678999999999999999999999999999999999987532         2357


Q ss_pred             CccEEEEcCC
Q psy17793        165 SFDRILLDAP  174 (397)
Q Consensus       165 ~fD~Il~DpP  174 (397)
                      +||+++.|||
T Consensus       221 kFDvfiTDPp  230 (354)
T COG1568         221 KFDVFITDPP  230 (354)
T ss_pred             hCCeeecCch
Confidence            8999999999

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.15  E-value=0.0019  Score=60.95  Aligned_cols=75  Identities=16%  Similarity=0.154  Sum_probs=50.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      -+|..+||+||.+||+|-.+.+.  +..+|+|+|.....+..--+    .. .+ +..-..|++.+...        .+ 
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR----~d-~rV~~~E~tN~r~l~~~--------~~-  141 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLR----ND-PRVIVLERTNVRYLTPE--------DF-  141 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHh----cC-CcEEEEecCChhhCCHH--------Hc-
Confidence            35889999999999999988874  67899999998755433111    11 22 33344555554211        12 


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      .+..|.|++|.+
T Consensus       142 ~~~~d~~v~DvS  153 (245)
T COG1189         142 TEKPDLIVIDVS  153 (245)
T ss_pred             ccCCCeEEEEee
Confidence            347899999986

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.14  E-value=0.0034  Score=62.32  Aligned_cols=65  Identities=11%  Similarity=0.098  Sum_probs=51.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE--EEcccccc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMND---TGTLIALDKSKPRVTKLEETIKKLQLSSIQT--HVYDSTRI  148 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~---~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~--~~~D~~~~  148 (397)
                      .++..++|+|||.|.||..+.+.+..   ..+.+++|+|...++.+.+++..-..+.+++  +++|....
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence            46678999999999999988876642   3568999999999999999998444555544  78887654

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK00536 speE spermidine synthase; Provisional

Probab=97.11  E-value=0.0056  Score=59.11  Aligned_cols=72  Identities=8%  Similarity=0.014  Sum_probs=52.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC--CC--cEEEEEcccccccccchhhHHHhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ--LS--SIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g--~~--~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      .-++||=+|.|-|+....+++.  + .+|+-||+|+..++.+++-+-.+.  ++  +++++..    .. .         
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~-~---------  134 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LL-D---------  134 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hh-h---------
Confidence            3479999999999999888874  3 499999999999999998555432  33  3555541    11 0         


Q ss_pred             hcccCccEEEEcC
Q psy17793        161 LQKESFDRILLDA  173 (397)
Q Consensus       161 ~~~~~fD~Il~Dp  173 (397)
                      ...++||+|++|-
T Consensus       135 ~~~~~fDVIIvDs  147 (262)
T PRK00536        135 LDIKKYDLIICLQ  147 (262)
T ss_pred             ccCCcCCEEEEcC
Confidence            1235799999993

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.10  E-value=0.002  Score=62.60  Aligned_cols=105  Identities=14%  Similarity=0.107  Sum_probs=62.5

Q ss_pred             CeEEEEcCCCChHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHH-HhCCC-cEEEEEcccccccccchhhHHHhhhcc
Q psy17793         87 QKVLDMCAAPGNKLT-HIALLMNDTGTLIALDKSKPRVTKLEETIK-KLQLS-SIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        87 ~~VLDlcagpG~kt~-~lA~~~~~~~~V~avD~s~~rl~~l~~n~~-~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .+|+=+|+||==.|. .++.....+..|+++|+|+.+.+.+++.++ ..|+. .+++.++|......           .-
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~-----------dl  190 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY-----------DL  190 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G-----------G-
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc-----------cc
Confidence            499999999876665 445444456789999999999999999888 55654 49999999876531           22


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      ..||+|++-+-                      +..-++.-.++|.+           ..+.++||..|+|=
T Consensus       191 ~~~DvV~lAal----------------------Vg~~~e~K~~Il~~-----------l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  191 KEYDVVFLAAL----------------------VGMDAEPKEEILEH-----------LAKHMAPGARLVVR  229 (276)
T ss_dssp             ---SEEEE-TT-----------------------S----SHHHHHHH-----------HHHHS-TTSEEEEE
T ss_pred             ccCCEEEEhhh----------------------cccccchHHHHHHH-----------HHhhCCCCcEEEEe
Confidence            57999998331                      10001111678888           88899999999886

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.02  E-value=0.0017  Score=62.77  Aligned_cols=107  Identities=16%  Similarity=0.109  Sum_probs=68.1

Q ss_pred             CCeEEEEcCCCCh----HHHHHHHHcCC----CcEEEEEeCCHHHHHHHHHHHHH-----hCCC----------------
Q psy17793         86 GQKVLDMCAAPGN----KLTHIALLMND----TGTLIALDKSKPRVTKLEETIKK-----LQLS----------------  136 (397)
Q Consensus        86 g~~VLDlcagpG~----kt~~lA~~~~~----~~~V~avD~s~~rl~~l~~n~~~-----~g~~----------------  136 (397)
                      .-+|+-++|++|-    .++.+.+..+.    ..+|+|.|+|...++.|+.-.-.     -+++                
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            3489999999994    45455555432    57899999999999988643211     1111                


Q ss_pred             --------cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHH
Q psy17793        137 --------SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLL  208 (397)
Q Consensus       137 --------~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL  208 (397)
                              .|.+...|...-          .+ ..+.||+|+|         | ++           -+---.+.|.+++
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~----------~~-~~~~fD~IfC---------R-NV-----------LIYFd~~~q~~il  224 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDD----------SP-FLGKFDLIFC---------R-NV-----------LIYFDEETQERIL  224 (268)
T ss_pred             EEChHHhcccEEeecCCCCC----------cc-ccCCCCEEEE---------c-ce-----------EEeeCHHHHHHHH
Confidence                    133333333221          11 3467999998         0 11           1111234678899


Q ss_pred             HHHhhhhccccccccccccCCcEEEEE
Q psy17793        209 QAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       209 ~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      ..           ....|+|||.|+.-
T Consensus       225 ~~-----------f~~~L~~gG~LflG  240 (268)
T COG1352         225 RR-----------FADSLKPGGLLFLG  240 (268)
T ss_pred             HH-----------HHHHhCCCCEEEEc
Confidence            99           88999999999985

>KOG1709|consensus

Probab=96.97  E-value=0.0055  Score=57.05  Aligned_cols=106  Identities=18%  Similarity=0.210  Sum_probs=72.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      ..|.+||.+|-|-|...+.+-+.  +..+=+-+|.++.-++.++...-+-. .||.+..+-..+...         ...+
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~--~p~~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeDvl~---------~L~d  167 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEA--PPDEHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWEDVLN---------TLPD  167 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhc--CCcceEEEecCHHHHHHHHhcccccc-cceEEEecchHhhhc---------cccc
Confidence            57889999999999999888775  33445568999999988877643221 456665543333221         1355


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      +.||.|+-|.=              +  ...+++       +.+-++           +.++|||+|.+.|.
T Consensus       168 ~~FDGI~yDTy--------------~--e~yEdl-------~~~hqh-----------~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  168 KHFDGIYYDTY--------------S--ELYEDL-------RHFHQH-----------VVRLLKPEGVFSYF  205 (271)
T ss_pred             cCcceeEeech--------------h--hHHHHH-------HHHHHH-----------HhhhcCCCceEEEe
Confidence            67999998751              0  012333       445557           99999999999886

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=96.97  E-value=0.0037  Score=65.85  Aligned_cols=107  Identities=10%  Similarity=0.059  Sum_probs=73.6

Q ss_pred             CCCcEEEechhHHHHHhccCCC--CCCeEEEEcCCCChHHHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHHHHhCCC-
Q psy17793         63 DSSMGILQNLPSILAGHYLDVQ--PGQKVLDMCAAPGNKLTHIALLMN---DTGTLIALDKSKPRVTKLEETIKKLQLS-  136 (397)
Q Consensus        63 ~~g~~~~Qd~~S~l~~~~L~~~--~g~~VLDlcagpG~kt~~lA~~~~---~~~~V~avD~s~~rl~~l~~n~~~~g~~-  136 (397)
                      ..|.++....-+.+.+.++.+.  ++..|.|+|||+|+........+.   ....+++.|........++.|+.-.+.. 
T Consensus       193 ~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~  272 (501)
T TIGR00497       193 SGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY  272 (501)
T ss_pred             cCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc
Confidence            4567777766677777777764  678999999999998876544332   1246899999999999999988776653 


Q ss_pred             -cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCC
Q psy17793        137 -SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF  178 (397)
Q Consensus       137 -~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~  178 (397)
                       ......+|.....     |    ......||.|++|||.+..
T Consensus       273 ~t~~~~~~dtl~~~-----d----~~~~~~~D~v~~NpPf~~~  306 (501)
T TIGR00497       273 ANFNIINADTLTTK-----E----WENENGFEVVVSNPPYSIS  306 (501)
T ss_pred             cccCcccCCcCCCc-----c----ccccccCCEEeecCCcccc
Confidence             2333344433211     0    0123469999999998763

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.94  E-value=0.0025  Score=55.53  Aligned_cols=51  Identities=18%  Similarity=0.241  Sum_probs=45.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHhC
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLM---NDTGTLIALDKSKPRVTKLEETIKKLQ  134 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~---~~~~~V~avD~s~~rl~~l~~n~~~~g  134 (397)
                      .+...|+|+|||-|..+..++.++   ....+|+++|.++...+.+.++.++.+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   77 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG   77 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence            677899999999999999999944   246799999999999999999999888

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.92  E-value=0.0021  Score=59.40  Aligned_cols=108  Identities=18%  Similarity=0.161  Sum_probs=61.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHcC--------CCcEEEEEeCCHHHHHHHHHHH--------------HHh-----C----C
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMN--------DTGTLIALDKSKPRVTKLEETI--------------KKL-----Q----L  135 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~--------~~~~V~avD~s~~rl~~l~~n~--------------~~~-----g----~  135 (397)
                      -+|+.+||++|-=+-.||-++.        ...+|+|.|+|+..++.+++-.              +++     |    +
T Consensus        33 lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v  112 (196)
T PF01739_consen   33 LRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRV  112 (196)
T ss_dssp             EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE
T ss_pred             eEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeE
Confidence            4899999999954433333221        1358999999999999876422              111     0    0


Q ss_pred             -----CcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHH
Q psy17793        136 -----SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA  210 (397)
Q Consensus       136 -----~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~  210 (397)
                           ++|++...|..+.           ....+.||+|+|         | ++.           +---.+.|.++++.
T Consensus       113 ~~~lr~~V~F~~~NL~~~-----------~~~~~~fD~I~C---------R-NVl-----------IYF~~~~~~~vl~~  160 (196)
T PF01739_consen  113 KPELRKMVRFRRHNLLDP-----------DPPFGRFDLIFC---------R-NVL-----------IYFDPETQQRVLRR  160 (196)
T ss_dssp             -HHHHTTEEEEE--TT-S-----------------EEEEEE-----------SSG-----------GGS-HHHHHHHHHH
T ss_pred             ChHHcCceEEEecccCCC-----------CcccCCccEEEe---------c-CEE-----------EEeCHHHHHHHHHH
Confidence                 1356666665541           013468999998         0 110           11112456888999


Q ss_pred             HhhhhccccccccccccCCcEEEEEec
Q psy17793        211 VYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       211 ~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                                 ..+.|+|||.|+....
T Consensus       161 -----------l~~~L~pgG~L~lG~s  176 (196)
T PF01739_consen  161 -----------LHRSLKPGGYLFLGHS  176 (196)
T ss_dssp             -----------HGGGEEEEEEEEE-TT
T ss_pred             -----------HHHHcCCCCEEEEecC
Confidence                       9999999999998743

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.85  E-value=0.015  Score=58.09  Aligned_cols=80  Identities=14%  Similarity=0.236  Sum_probs=61.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH--HHHhC---C--CcEEEEEcccccccccchhhH
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET--IKKLQ---L--SSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n--~~~~g---~--~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      +.-++||=+|.|-|--...+.+. ..-.+|+-+|.||++++.++++  +.+.+   +  ++++++..|+.++.+.     
T Consensus       288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~-----  361 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT-----  361 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh-----
Confidence            45579999999999877777664 3367999999999999999844  34333   2  2489999999988633     


Q ss_pred             HHhhhcccCccEEEEcCC
Q psy17793        157 ERMKLQKESFDRILLDAP  174 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpP  174 (397)
                           ....||.|++|-|
T Consensus       362 -----a~~~fD~vIVDl~  374 (508)
T COG4262         362 -----AADMFDVVIVDLP  374 (508)
T ss_pred             -----hcccccEEEEeCC
Confidence                 3458999999988

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.79  E-value=0.0017  Score=60.32  Aligned_cols=82  Identities=18%  Similarity=0.206  Sum_probs=44.9

Q ss_pred             CcEEEechhHHHHHhcc--CCCCCCeEEEEcCCCChHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q psy17793         65 SMGILQNLPSILAGHYL--DVQPGQKVLDMCAAPGNKLTHIALLM---NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ  139 (397)
Q Consensus        65 g~~~~Qd~~S~l~~~~L--~~~~g~~VLDlcagpG~kt~~lA~~~---~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~  139 (397)
                      |.-++|.+.-+++-..|  +.+| +.|+++|.+-||-+...|+++   ++.++|+++|++............-+ .++|+
T Consensus        11 G~pi~q~P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-~~rI~   88 (206)
T PF04989_consen   11 GRPIIQYPQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-SPRIT   88 (206)
T ss_dssp             TEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEE
T ss_pred             CeehhcCHHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc-cCceE
Confidence            44566776655543332  2344 589999999999999888654   46789999999654433221111111 15699


Q ss_pred             EEEcccccc
Q psy17793        140 THVYDSTRI  148 (397)
Q Consensus       140 ~~~~D~~~~  148 (397)
                      ++.+|..+.
T Consensus        89 ~i~Gds~d~   97 (206)
T PF04989_consen   89 FIQGDSIDP   97 (206)
T ss_dssp             EEES-SSST
T ss_pred             EEECCCCCH
Confidence            999998765

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=96.73  E-value=0.042  Score=49.48  Aligned_cols=141  Identities=20%  Similarity=0.274  Sum_probs=84.8

Q ss_pred             CCChHHHHHHHHcCCCcEEEEE--eCCHHHHH---HHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcccCccE
Q psy17793         95 APGNKLTHIALLMNDTGTLIAL--DKSKPRVT---KLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDR  168 (397)
Q Consensus        95 gpG~kt~~lA~~~~~~~~V~av--D~s~~rl~---~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~  168 (397)
                      |-=+++..+|...+....|+|.  |......+   .+.+|++.+.-.+ ......|++++...       .......||+
T Consensus         6 GdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~-------~~~~~~~FDr   78 (166)
T PF10354_consen    6 GDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKH-------FRLKNQRFDR   78 (166)
T ss_pred             cchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCccccc-------ccccCCcCCE
Confidence            4445566666665434566655  44433333   2346666653223 23456788877532       1224578999


Q ss_pred             EEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHH
Q psy17793        169 ILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI  248 (397)
Q Consensus       169 Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV  248 (397)
                      |+-+=|+.|.|....          ...+.....+-..++.+           |.++|+++|.+..+-|.-.|- +...|
T Consensus        79 IiFNFPH~G~~~~~~----------~~~i~~nr~Ll~~Ff~S-----------a~~~L~~~G~IhVTl~~~~py-~~W~i  136 (166)
T PF10354_consen   79 IIFNFPHVGGGSEDG----------KRNIRLNRELLRGFFKS-----------ASQLLKPDGEIHVTLKDGQPY-DSWNI  136 (166)
T ss_pred             EEEeCCCCCCCccch----------hHHHHHHHHHHHHHHHH-----------HHHhcCCCCEEEEEeCCCCCC-ccccH
Confidence            999999998543211          23343333333556666           999999999999998886664 45556


Q ss_pred             HHHHHHCCCcEEEecCc
Q psy17793        249 AWILHRHPEVELVQTLP  265 (397)
Q Consensus       249 ~~~L~~~~~~~l~~~~~  265 (397)
                      ..+.++. ++.+....+
T Consensus       137 ~~lA~~~-gl~l~~~~~  152 (166)
T PF10354_consen  137 EELAAEA-GLVLVRKVP  152 (166)
T ss_pred             HHHHHhc-CCEEEEEec
Confidence            6555554 677766543

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.69  E-value=0.0041  Score=60.77  Aligned_cols=74  Identities=22%  Similarity=0.325  Sum_probs=53.4

Q ss_pred             eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCcc
Q psy17793         88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFD  167 (397)
Q Consensus        88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD  167 (397)
                      +++|++||-||.+.-+-..  +--.|.|+|+++.+.+..+.|..       .....|.+.+...        .++. .+|
T Consensus         2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~--------~l~~-~~D   63 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPS--------DLPK-DVD   63 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHH--------HHHH-T-S
T ss_pred             cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc-------ccccccccccccc--------cccc-cce
Confidence            6899999999999766653  33468999999999999998875       6778888877321        2333 599


Q ss_pred             EEEEcCCCCCCC
Q psy17793        168 RILLDAPCSGFG  179 (397)
Q Consensus       168 ~Il~DpPCSg~G  179 (397)
                      +++.=|||.+..
T Consensus        64 ~l~ggpPCQ~fS   75 (335)
T PF00145_consen   64 LLIGGPPCQGFS   75 (335)
T ss_dssp             EEEEE---TTTS
T ss_pred             EEEeccCCceEe
Confidence            999999998754

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=96.64  E-value=0.01  Score=55.46  Aligned_cols=104  Identities=15%  Similarity=0.137  Sum_probs=66.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES  165 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~  165 (397)
                      -.+.||+|||-|-.|-++..  +--.+|-.+|..+.-++.+++.+...+-.-.++++.-..++..           ...+
T Consensus        56 ~~~alDcGAGIGRVTk~lLl--~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P-----------~~~~  122 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLL--PVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTP-----------EEGK  122 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCC--CC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG---------------TT-
T ss_pred             cceEEecccccchhHHHHHH--HhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccC-----------CCCc
Confidence            46999999999999987744  3356899999999999999976655222235666666655521           2358


Q ss_pred             ccEEEEcCCCCCCCCCcccccccCccch-HHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        166 FDRILLDAPCSGFGQRPMFYNANSFLNL-DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       166 fD~Il~DpPCSg~G~~p~~~~~~s~~~~-~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      ||+|-+               .|-..++ .+++       .++|.+           ..+.|+|+|.||.-
T Consensus       123 YDlIW~---------------QW~lghLTD~dl-------v~fL~R-----------Ck~~L~~~G~IvvK  160 (218)
T PF05891_consen  123 YDLIWI---------------QWCLGHLTDEDL-------VAFLKR-----------CKQALKPNGVIVVK  160 (218)
T ss_dssp             EEEEEE---------------ES-GGGS-HHHH-------HHHHHH-----------HHHHEEEEEEEEEE
T ss_pred             EeEEEe---------------hHhhccCCHHHH-------HHHHHH-----------HHHhCcCCcEEEEE
Confidence            999976               2221122 2322       456777           88899999999875

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.64  E-value=0.018  Score=47.06  Aligned_cols=109  Identities=19%  Similarity=0.127  Sum_probs=67.7

Q ss_pred             EEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc-cCcc
Q psy17793         89 VLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK-ESFD  167 (397)
Q Consensus        89 VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~-~~fD  167 (397)
                      ++|++||+|..+ .++........++++|.++.++...+......+...+.+...|.....         .++.. ..||
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~d  121 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGV---------LPFEDSASFD  121 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCC---------CCCCCCCcee
Confidence            999999999987 455543222488999999999998555444322211567777765410         01333 3689


Q ss_pred             EEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793        168 RILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE  242 (397)
Q Consensus       168 ~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e  242 (397)
                      .+.....           ..+.     .        ....+..           +.+.|+++|.+++.+......
T Consensus       122 ~~~~~~~-----------~~~~-----~--------~~~~~~~-----------~~~~l~~~g~~~~~~~~~~~~  161 (257)
T COG0500         122 LVISLLV-----------LHLL-----P--------PAKALRE-----------LLRVLKPGGRLVLSDLLRDGL  161 (257)
T ss_pred             EEeeeee-----------hhcC-----C--------HHHHHHH-----------HHHhcCCCcEEEEEeccCCCC
Confidence            8843111           0000     0        2455666           788899999999987764443

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=96.49  E-value=0.018  Score=53.57  Aligned_cols=122  Identities=18%  Similarity=0.227  Sum_probs=63.6

Q ss_pred             chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccc
Q psy17793         71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT  150 (397)
Q Consensus        71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~  150 (397)
                      ++--.++..+....++-.|-|+|||-+..+    ..+.++-+|+.+|.-...             +  .++.+|..+.+ 
T Consensus        58 nPvd~iI~~l~~~~~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~n-------------~--~Vtacdia~vP-  117 (219)
T PF05148_consen   58 NPVDVIIEWLKKRPKSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAPN-------------P--RVTACDIANVP-  117 (219)
T ss_dssp             -HHHHHHHHHCTS-TTS-EEEES-TT-HHH----HH--S---EEEEESS-SS-------------T--TEEES-TTS-S-
T ss_pred             CcHHHHHHHHHhcCCCEEEEECCCchHHHH----HhcccCceEEEeeccCCC-------------C--CEEEecCccCc-
Confidence            444444544444444568999999988765    344455689999985421             2  35668886653 


Q ss_pred             cchhhHHHhhhcccCccEEEEcCCCCC-CCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793        151 SSQIDIERMKLQKESFDRILLDAPCSG-FGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD  229 (397)
Q Consensus       151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg-~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg  229 (397)
                                ..++++|+++.   |=+ .|+           +.           ...|.+           |.|+||+|
T Consensus       118 ----------L~~~svDv~Vf---cLSLMGT-----------n~-----------~~fi~E-----------A~RvLK~~  151 (219)
T PF05148_consen  118 ----------LEDESVDVAVF---CLSLMGT-----------NW-----------PDFIRE-----------ANRVLKPG  151 (219)
T ss_dssp             ------------TT-EEEEEE---ES---SS------------H-----------HHHHHH-----------HHHHEEEE
T ss_pred             ----------CCCCceeEEEE---EhhhhCC-----------Cc-----------HHHHHH-----------HHheeccC
Confidence                      56788999987   321 111           12           556777           99999999


Q ss_pred             cEEEEEe-cCCCccccHHHHHHHHHHCCCcEEE
Q psy17793        230 GILVYCT-CSLSVEENEAVIAWILHRHPEVELV  261 (397)
Q Consensus       230 G~lvysT-CS~~~eEnE~vV~~~L~~~~~~~l~  261 (397)
                      |.|.... +|-  -+|.+.-.+.++.. +|++.
T Consensus       152 G~L~IAEV~SR--f~~~~~F~~~~~~~-GF~~~  181 (219)
T PF05148_consen  152 GILKIAEVKSR--FENVKQFIKALKKL-GFKLK  181 (219)
T ss_dssp             EEEEEEEEGGG---S-HHHHHHHHHCT-TEEEE
T ss_pred             cEEEEEEeccc--CcCHHHHHHHHHHC-CCeEE
Confidence            9987663 442  23433333445554 45554

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.40  E-value=0.078  Score=49.64  Aligned_cols=125  Identities=18%  Similarity=0.215  Sum_probs=90.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      +.+.++.|+||--|.....+... +....++|.|+++.-++.+.++++++++.. +++..+|......           .
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-----------~   82 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-----------L   82 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC-----------c
Confidence            34667999999999999888774 345789999999999999999999999864 9999999965531           2


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE  242 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e  242 (397)
                      +..+|.|+.    .|.|-              ..+       +++|++           ..+.|+.=-++|.     .|-
T Consensus        83 ~d~~d~ivI----AGMGG--------------~lI-------~~ILee-----------~~~~l~~~~rlIL-----QPn  121 (226)
T COG2384          83 EDEIDVIVI----AGMGG--------------TLI-------REILEE-----------GKEKLKGVERLIL-----QPN  121 (226)
T ss_pred             cCCcCEEEE----eCCcH--------------HHH-------HHHHHH-----------hhhhhcCcceEEE-----CCC
Confidence            336898876    24331              111       556666           4444443235554     577


Q ss_pred             ccHHHHHHHHHHCCCcEEEe
Q psy17793        243 ENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       243 EnE~vV~~~L~~~~~~~l~~  262 (397)
                      -++...+.+|..+ +|++..
T Consensus       122 ~~~~~LR~~L~~~-~~~I~~  140 (226)
T COG2384         122 IHTYELREWLSAN-SYEIKA  140 (226)
T ss_pred             CCHHHHHHHHHhC-Cceeee
Confidence            7888999999988 566543

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.39  E-value=0.0016  Score=67.35  Aligned_cols=101  Identities=15%  Similarity=0.089  Sum_probs=58.6

Q ss_pred             eEEEEcCCCChHHHHHHHHcCCCcEEEEE---eCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         88 KVLDMCAAPGNKLTHIALLMNDTGTLIAL---DKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        88 ~VLDlcagpG~kt~~lA~~~~~~~~V~av---D~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      .+||+|||.|+++.+|.++   +..+..+   |..+..++.+.++    |+.-+....+            ....+|+..
T Consensus       120 ~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~~~------------s~rLPfp~~  180 (506)
T PF03141_consen  120 TALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALER----GVPAMIGVLG------------SQRLPFPSN  180 (506)
T ss_pred             EEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhhc----Ccchhhhhhc------------cccccCCcc
Confidence            7899999999999988874   3333332   4444444444332    4432111100            112457888


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS  240 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~  240 (397)
                      .||.|=|    |.-..      .|.    ..+        -.+|-+           .-++|+|||++|+|.=.++
T Consensus       181 ~fDmvHc----src~i------~W~----~~~--------g~~l~e-----------vdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  181 AFDMVHC----SRCLI------PWH----PND--------GFLLFE-----------VDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             chhhhhc----ccccc------cch----hcc--------cceeeh-----------hhhhhccCceEEecCCccc
Confidence            9999874    33221      122    111        123444           7899999999999965555

; GO: 0008168 methyltransferase activity

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=96.28  E-value=0.055  Score=48.53  Aligned_cols=139  Identities=18%  Similarity=0.226  Sum_probs=79.6

Q ss_pred             cEEEechhHHHHHhccC-CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcc
Q psy17793         66 MGILQNLPSILAGHYLD-VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD  144 (397)
Q Consensus        66 ~~~~Qd~~S~l~~~~L~-~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D  144 (397)
                      ++|--+-+..++..+++ ..++.+|+=+||=+-...+.  .....+..++-.|.|.+-        +.+|-+  .+...|
T Consensus         5 fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~--~~~~~~~~~~Lle~D~RF--------~~~~~~--~F~fyD   72 (162)
T PF10237_consen    5 FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALK--KESKPRIQSFLLEYDRRF--------EQFGGD--EFVFYD   72 (162)
T ss_pred             cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHH--hhcCCCccEEEEeecchH--------HhcCCc--ceEECC
Confidence            34444444445555554 24567898888765444432  222356678889987643        334432  455666


Q ss_pred             cccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q psy17793        145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIP  224 (397)
Q Consensus       145 ~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~  224 (397)
                      ......-       +....++||+|++|||               +++ .+-....       ...           +..
T Consensus        73 ~~~p~~~-------~~~l~~~~d~vv~DPP---------------Fl~-~ec~~k~-------a~t-----------i~~  111 (162)
T PF10237_consen   73 YNEPEEL-------PEELKGKFDVVVIDPP---------------FLS-EECLTKT-------AET-----------IRL  111 (162)
T ss_pred             CCChhhh-------hhhcCCCceEEEECCC---------------CCC-HHHHHHH-------HHH-----------HHH
Confidence            6543210       1122578999999999               222 2333222       222           444


Q ss_pred             cccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCc
Q psy17793        225 LLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLP  265 (397)
Q Consensus       225 lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~  265 (397)
                      ++|+++.++.+    ..+++|+.+.+.+    +++.....|
T Consensus       112 L~k~~~kii~~----Tg~~~~~~~~~ll----~~~~~~f~p  144 (162)
T PF10237_consen  112 LLKPGGKIILC----TGEEMEELIKKLL----GLRMCDFQP  144 (162)
T ss_pred             HhCccceEEEe----cHHHHHHHHHHHh----CeeEEeEEe
Confidence            55778899986    4788998888888    455444433

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>KOG0024|consensus

Probab=96.01  E-value=0.061  Score=53.09  Aligned_cols=74  Identities=18%  Similarity=0.209  Sum_probs=52.2

Q ss_pred             cCCCcEEEechhHHH-HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q psy17793         62 LDSSMGILQNLPSIL-AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT  140 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l-~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~  140 (397)
                      +.+|. ++|..+-.+ +...-+.+.|.+||=+||||=|..+.+++..-+..+|+.+|.++.|++.+++    +|.+.+..
T Consensus       146 ~eeGA-l~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~  220 (354)
T KOG0024|consen  146 FEEGA-LIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDP  220 (354)
T ss_pred             hhhcc-cccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEee
Confidence            45565 356655433 3344567899999999999966555444443467899999999999998875    78765443

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.98  E-value=0.037  Score=53.28  Aligned_cols=141  Identities=18%  Similarity=0.196  Sum_probs=77.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC---------------------------
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS---------------------------  136 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~---------------------------  136 (397)
                      ..|+++||+||||-..-.  ......--.|+..|..+.-.+.+++-+++-+.-                           
T Consensus        55 ~~g~~llDiGsGPtiy~~--lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR  132 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQL--LSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR  132 (256)
T ss_dssp             S-EEEEEEES-TT--GGG--TTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhh--hhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence            357899999999954432  222223457999999999998888777654320                           


Q ss_pred             -cE-EEEEcccccccccchhhHHHhh-hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhh
Q psy17793        137 -SI-QTHVYDSTRINTSSQIDIERMK-LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYR  213 (397)
Q Consensus       137 -~v-~~~~~D~~~~~~~~~~d~~~~~-~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~  213 (397)
                       .| .++.+|.++...-      .+. ..+.+||.|+.                  ..-++....+.... ++.+++   
T Consensus       133 ~~Vk~Vv~cDV~~~~pl------~~~~~~p~~~D~v~s------------------~fcLE~a~~d~~~y-~~al~n---  184 (256)
T PF01234_consen  133 RAVKQVVPCDVTQPNPL------DPPVVLPPKFDCVIS------------------SFCLESACKDLDEY-RRALRN---  184 (256)
T ss_dssp             HHEEEEEE--TTSSSTT------TTS-SS-SSEEEEEE------------------ESSHHHH-SSHHHH-HHHHHH---
T ss_pred             HhhceEEEeeccCCCCC------CccccCccchhhhhh------------------hHHHHHHcCCHHHH-HHHHHH---
Confidence             01 1333444332100      000 01123666654                  11232333333333 777888   


Q ss_pred             hhccccccccccccCCcEEEEEec---C---C------CccccHHHHHHHHHHCCCcEEEec
Q psy17793        214 FVSLFDWQGIPLLKKDGILVYCTC---S---L------SVEENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       214 f~~~~~~~a~~lLkpgG~lvysTC---S---~------~~eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                              ..++|||||.|++...   |   +      ...-||+.|...|++. ++.+...
T Consensus       185 --------i~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~a-G~~i~~~  237 (256)
T PF01234_consen  185 --------ISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEA-GFDIEDL  237 (256)
T ss_dssp             --------HHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHT-TEEEEEE
T ss_pred             --------HHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHc-CCEEEec
Confidence                    9999999999998742   1   1      1135788999999987 5766654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PHA01634 hypothetical protein

Probab=95.78  E-value=0.05  Score=46.79  Aligned_cols=49  Identities=14%  Similarity=0.129  Sum_probs=43.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL  135 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~  135 (397)
                      .+.+|+|+||+-|.-++..+.  .++..|+|+|.++...+..+++++-+.+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l--~GAK~Vva~E~~~kl~k~~een~k~nnI   76 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLL--RGASFVVQYEKEEKLRKKWEEVCAYFNI   76 (156)
T ss_pred             cCCEEEEecCCccchhhHHhh--cCccEEEEeccCHHHHHHHHHHhhhhee
Confidence            378999999999999988876  4778999999999999999999988754

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.77  E-value=0.033  Score=54.13  Aligned_cols=47  Identities=17%  Similarity=0.218  Sum_probs=38.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL  133 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~  133 (397)
                      .+|||+|||||.-+..+.+..+.-.+++++|.|+.+++.++..++..
T Consensus        35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~   81 (274)
T PF09243_consen   35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG   81 (274)
T ss_pred             ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence            58999999999877666666655668999999999999888876654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.73  E-value=0.052  Score=54.26  Aligned_cols=51  Identities=25%  Similarity=0.339  Sum_probs=39.8

Q ss_pred             cCCCCCCeEEEEcCC-CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPGQKVLDMCAA-PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g~~VLDlcag-pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      .+.+||++|+=.|+| -|..++++|..++  .+|+|+|++++..+.++    ++|.+.
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~----~lGAd~  213 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAK----KLGADH  213 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHH----HhCCcE
Confidence            346899999988887 4466778888764  89999999999987765    567654

>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []

Probab=95.52  E-value=0.011  Score=45.92  Aligned_cols=31  Identities=35%  Similarity=0.607  Sum_probs=26.6

Q ss_pred             EEEechhhhhhhhcccceecccccccCCCCC
Q psy17793        347 QIIVDQPCALAVLRGADVFAPGVLAMPLGKN  377 (397)
Q Consensus       347 ~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~  377 (397)
                      .++||..|..++++|+++|+|||+.+...+.
T Consensus         2 ~vvVd~~a~~~i~~Ga~L~~~GV~~~~~~f~   32 (74)
T PF01472_consen    2 RVVVDDGAVEAILNGASLFAPGVVEVDGDFR   32 (74)
T ss_dssp             EEEE-HHHHHHHHTTSEEEGGGEEEEETT--
T ss_pred             EEEECccHHHHHHcCCCcchHHhEECCCCcC
Confidence            5899999999999999999999999988764

PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....

>PRK11524 putative methyltransferase; Provisional

Probab=95.50  E-value=0.023  Score=55.35  Aligned_cols=72  Identities=18%  Similarity=0.093  Sum_probs=44.7

Q ss_pred             cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhc
Q psy17793        137 SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS  216 (397)
Q Consensus       137 ~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~  216 (397)
                      +.+++++|+.....         .++.++||+|++|||+-...........+.       ...+...-.++|..      
T Consensus         8 ~~~i~~gD~~~~l~---------~l~~~siDlIitDPPY~~~~~~~~~~~~~~-------~~~~~~~l~~~l~~------   65 (284)
T PRK11524          8 AKTIIHGDALTELK---------KIPSESVDLIFADPPYNIGKNFDGLIEAWK-------EDLFIDWLYEWIDE------   65 (284)
T ss_pred             CCEEEeccHHHHHH---------hcccCcccEEEECCCccccccccccccccc-------HHHHHHHHHHHHHH------
Confidence            45788889887532         245678999999999843111111111111       11222223677788      


Q ss_pred             cccccccccccCCcEEEEE
Q psy17793        217 LFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       217 ~~~~~a~~lLkpgG~lvys  235 (397)
                           +.++||+||.++..
T Consensus        66 -----~~rvLK~~G~i~i~   79 (284)
T PRK11524         66 -----CHRVLKKQGTMYIM   79 (284)
T ss_pred             -----HHHHhCCCcEEEEE
Confidence                 99999999999875

>KOG2782|consensus

Probab=95.44  E-value=0.01  Score=55.37  Aligned_cols=99  Identities=19%  Similarity=0.163  Sum_probs=68.2

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      +.++|.|.+|...+||.-|.||.|..+.+.- ...+++|.|.+|-+-+.++.....+--..++...+.+..+. ...   
T Consensus        35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~-~l~---  109 (303)
T KOG2782|consen   35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIK-SLI---  109 (303)
T ss_pred             HHHHcCCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHH-HHH---
Confidence            3567889999999999999999999998863 56789999999999888776664332122222222222221 000   


Q ss_pred             HHhhhcccCccEEEEcCCCCCCCC
Q psy17793        157 ERMKLQKESFDRILLDAPCSGFGQ  180 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg~G~  180 (397)
                      .+.-..+..||.||+|--||+...
T Consensus       110 ~~~gl~~~~vDGiLmDlGcSSMQ~  133 (303)
T KOG2782|consen  110 ADTGLLDVGVDGILMDLGCSSMQV  133 (303)
T ss_pred             HHhCCCcCCcceEEeecCcccccc
Confidence            111245678999999999999763

>KOG2078|consensus

Probab=95.40  E-value=0.0089  Score=60.67  Aligned_cols=64  Identities=22%  Similarity=0.216  Sum_probs=56.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEEccccccc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS--SIQTHVYDSTRIN  149 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~--~v~~~~~D~~~~~  149 (397)
                      -++|+.|-|+|||-|-+++-++.   .+.+|+|+|.++++++.|+.|++.+.+.  +|++...|+..+.
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~k---K~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAK---KGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL  312 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhh---cCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence            36899999999999999987776   3489999999999999999999998875  4999999998775

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=95.33  E-value=0.022  Score=56.47  Aligned_cols=73  Identities=22%  Similarity=0.282  Sum_probs=52.7

Q ss_pred             EEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccE
Q psy17793         89 VLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDR  168 (397)
Q Consensus        89 VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~  168 (397)
                      |+|++||.||.+.-+-..  +--.+.|+|+++.+.+..+.|..     + .+...|..++...        .+  ..+|+
T Consensus         1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~--------~~--~~~dv   62 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPS--------DI--PDFDI   62 (315)
T ss_pred             CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhh--------hC--CCcCE
Confidence            689999999999766552  33457889999999999888753     2 3345677665211        12  35899


Q ss_pred             EEEcCCCCCCC
Q psy17793        169 ILLDAPCSGFG  179 (397)
Q Consensus       169 Il~DpPCSg~G  179 (397)
                      ++.-|||.+..
T Consensus        63 l~gg~PCq~fS   73 (315)
T TIGR00675        63 LLGGFPCQPFS   73 (315)
T ss_pred             EEecCCCcccc
Confidence            99999997754

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=95.31  E-value=0.29  Score=45.17  Aligned_cols=40  Identities=18%  Similarity=0.328  Sum_probs=35.3

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCC
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS  119 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s  119 (397)
                      +..+++|.+|+|+--|.|.+|..++..++.+|.|+++=-.
T Consensus        43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~   82 (238)
T COG4798          43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPA   82 (238)
T ss_pred             EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecch
Confidence            4467899999999999999999999999999999987543

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=95.07  E-value=0.15  Score=55.55  Aligned_cols=126  Identities=14%  Similarity=0.138  Sum_probs=78.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHc------CC-----CcEEEEEeCCHHHHHHHHHHHH--------------H-----hCCC
Q psy17793         87 QKVLDMCAAPGNKLTHIALLM------ND-----TGTLIALDKSKPRVTKLEETIK--------------K-----LQLS  136 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~------~~-----~~~V~avD~s~~rl~~l~~n~~--------------~-----~g~~  136 (397)
                      =+|+|+|-|+|.-.+.+.+..      .+     .-+++++|..|-..+.+.+.++              .     .|+.
T Consensus        59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~  138 (662)
T PRK01747         59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH  138 (662)
T ss_pred             EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence            589999999998777666544      11     3578999987633333322221              1     1221


Q ss_pred             ---------cEEEEEcccccccccchhhHHHhhhcccCccEEEEcC--CCCCCCCCcccccccCccchHHHHHHHHHHHH
Q psy17793        137 ---------SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDA--PCSGFGQRPMFYNANSFLNLDKKIKSYANIQK  205 (397)
Q Consensus       137 ---------~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~Dp--PCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~  205 (397)
                               ++++..+|+......         + ...||.|++|+  |    .++|++   |+               .
T Consensus       139 ~~~~~~~~~~l~l~~gd~~~~~~~---------~-~~~~d~~~lD~FsP----~~np~~---W~---------------~  186 (662)
T PRK01747        139 RLLFDDGRVTLDLWFGDANELLPQ---------L-DARADAWFLDGFAP----AKNPDM---WS---------------P  186 (662)
T ss_pred             EEEecCCcEEEEEEecCHHHHHHh---------c-cccccEEEeCCCCC----ccChhh---cc---------------H
Confidence                     234555676654311         1 24699999996  3    123333   44               4


Q ss_pred             HHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEec
Q psy17793        206 KLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       206 ~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                      +++..           ..+++++||+++--|++       ..|++-|... +|++...
T Consensus       187 ~~~~~-----------l~~~~~~~~~~~t~t~a-------~~vr~~l~~~-GF~v~~~  225 (662)
T PRK01747        187 NLFNA-----------LARLARPGATLATFTSA-------GFVRRGLQEA-GFTVRKV  225 (662)
T ss_pred             HHHHH-----------HHHHhCCCCEEEEeehH-------HHHHHHHHHc-CCeeeec
Confidence            55666           77889999999854443       4788888887 6777654

>COG2016 Predicted RNA-binding protein (contains PUA domain) [Translation, ribosomal structure and biogenesis]

Probab=94.92  E-value=0.019  Score=51.03  Aligned_cols=32  Identities=34%  Similarity=0.512  Sum_probs=30.4

Q ss_pred             eEEEechhhhhhhhcccceecccccccCCCCC
Q psy17793        346 VQIIVDQPCALAVLRGADVFAPGVLAMPLGKN  377 (397)
Q Consensus       346 ~~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~  377 (397)
                      ..|.||...-..++.||||++|||+++...++
T Consensus        77 ~~V~VD~GAvk~v~nGADvM~PGIv~~~~~ik  108 (161)
T COG2016          77 YVVVVDEGAVKFVLNGADVMAPGIVSADGEIK  108 (161)
T ss_pred             cEEEEcCccHhhhcCCCceeccceeecCCCcc
Confidence            39999999999999999999999999999887

>TIGR00451 unchar_dom_2 uncharacterized domain 2

Probab=94.71  E-value=0.023  Score=47.22  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=29.7

Q ss_pred             CCeEEEechhhhhhhhcccceecccccccCCCC
Q psy17793        344 HPVQIIVDQPCALAVLRGADVFAPGVLAMPLGK  376 (397)
Q Consensus       344 ~~~~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~  376 (397)
                      ....++||..|..++++||++++|||+++...+
T Consensus        29 ~~~~v~vd~~a~~~l~~Ga~L~~pGV~~~~~~~   61 (107)
T TIGR00451        29 DKKIVVVDNGAVKFLKNGADVMRPGIVDADEDI   61 (107)
T ss_pred             hCCEEEEChhHHHHHHCCccccCCeeEeCCCCc
Confidence            457899999999999999999999999987754

This uncharacterized domain is found a number of enzymes and uncharacterized proteins, often at the C-terminus. It is found in some but not all members of a family of related tRNA-guanine transglycosylases (tgt), which exchange a guanine base for some modified base without breaking the phosphodiester backbone of the tRNA. It is also found in rRNA pseudouridine synthase, another enzyme of RNA base modification not otherwise homologous to tgt. It is found, again at the C-terminus, in two putative glutamate 5-kinases. It is also found in a family of small, uncharacterized archaeal proteins consisting mostly of this domain.

>PRK11524 putative methyltransferase; Provisional

Probab=94.66  E-value=0.064  Score=52.32  Aligned_cols=46  Identities=17%  Similarity=0.156  Sum_probs=37.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKK  132 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~  132 (397)
                      .+|+.|||-++|+|..+. +|..+  +-+.+|+|++++.++.++++++.
T Consensus       207 ~~GD~VLDPF~GSGTT~~-AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGA-VAKAS--GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcHHHH-HHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence            689999999999997654 44444  34799999999999999999864

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.47  E-value=0.077  Score=52.85  Aligned_cols=77  Identities=19%  Similarity=0.280  Sum_probs=55.1

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF  166 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f  166 (397)
                      -+++|++||-||...-+...  +--.+.|+|+++.+++..+.|...     -.+...|.......        .+....+
T Consensus         4 ~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~--------~~~~~~~   68 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGE--------ALRKSDV   68 (328)
T ss_pred             ceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChh--------hccccCC
Confidence            47999999999999665553  334689999999999999887653     34555666554311        1111179


Q ss_pred             cEEEEcCCCCCC
Q psy17793        167 DRILLDAPCSGF  178 (397)
Q Consensus       167 D~Il~DpPCSg~  178 (397)
                      |+|+.=|||-+.
T Consensus        69 DvligGpPCQ~F   80 (328)
T COG0270          69 DVLIGGPPCQDF   80 (328)
T ss_pred             CEEEeCCCCcch
Confidence            999999999654

>KOG3178|consensus

Probab=94.38  E-value=0.26  Score=49.11  Aligned_cols=107  Identities=15%  Similarity=0.147  Sum_probs=77.7

Q ss_pred             hccCCCCC----CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh
Q psy17793         79 HYLDVQPG----QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI  154 (397)
Q Consensus        79 ~~L~~~~g----~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~  154 (397)
                      .++....|    ...+|+|+|.|..+-++.... +  .|-+++.+..-+-.+...+. .|   |+-+.+|...-.     
T Consensus       167 ~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq~~-----  234 (342)
T KOG3178|consen  167 KILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQDT-----  234 (342)
T ss_pred             hhhhhhcccccCceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-CC---cceecccccccC-----
Confidence            34444455    688999999999999988853 2  47888888888888777766 56   455567765431     


Q ss_pred             hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793        155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY  234 (397)
Q Consensus       155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy  234 (397)
                             +  +-|+|++          .++..+|+    .++.       .++|++           .++.|+|||.|+.
T Consensus       235 -------P--~~daI~m----------kWiLhdwt----Dedc-------vkiLkn-----------C~~sL~~~GkIiv  273 (342)
T KOG3178|consen  235 -------P--KGDAIWM----------KWILHDWT----DEDC-------VKILKN-----------CKKSLPPGGKIIV  273 (342)
T ss_pred             -------C--CcCeEEE----------EeecccCC----hHHH-------HHHHHH-----------HHHhCCCCCEEEE
Confidence                   2  2368886          45556677    5555       677888           9999999999998


Q ss_pred             EecC
Q psy17793        235 CTCS  238 (397)
Q Consensus       235 sTCS  238 (397)
                      ..+-
T Consensus       274 ~E~V  277 (342)
T KOG3178|consen  274 VENV  277 (342)
T ss_pred             Eecc
Confidence            8763

>TIGR03684 arCOG00985 arCOG04150 universal archaeal PUA-domain protein

Probab=94.20  E-value=0.039  Score=48.74  Aligned_cols=33  Identities=24%  Similarity=0.521  Sum_probs=29.4

Q ss_pred             CCeEEEechhhhhhhhcccceecccccccCCCC
Q psy17793        344 HPVQIIVDQPCALAVLRGADVFAPGVLAMPLGK  376 (397)
Q Consensus       344 ~~~~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~  376 (397)
                      ....|+||..+..++++||++++|||++++.++
T Consensus        68 ~~~~v~Vd~~a~~~l~~Ga~lm~pGV~~~~~~~  100 (150)
T TIGR03684        68 DKNRVVVDEGAVKFIINGADIMAPGIVSADPSI  100 (150)
T ss_pred             cCCEEEECccHHHHHhcCcccccCceecCCCCC
Confidence            347899999999999999999999999987754

This universal archaeal protein contains a domain possibly associated with RNA binding (pfam01472, TIGR00451).

>KOG1269|consensus

Probab=94.06  E-value=0.068  Score=54.04  Aligned_cols=77  Identities=25%  Similarity=0.366  Sum_probs=60.2

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      ...++..++|++||-|+.+..++..  ....++++|.++..+..........++++ -.+...|+.+.           +
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~-----------~  173 (364)
T KOG1269|consen  107 SCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM-----------P  173 (364)
T ss_pred             cCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC-----------C
Confidence            4568889999999999999999886  45789999999999999888888887765 22355565543           3


Q ss_pred             hcccCccEEEE
Q psy17793        161 LQKESFDRILL  171 (397)
Q Consensus       161 ~~~~~fD~Il~  171 (397)
                      +.+..||.+-+
T Consensus       174 fedn~fd~v~~  184 (364)
T KOG1269|consen  174 FEDNTFDGVRF  184 (364)
T ss_pred             CCccccCcEEE
Confidence            66778998864

>PRK14560 putative RNA-binding protein; Provisional

Probab=93.92  E-value=0.047  Score=48.76  Aligned_cols=33  Identities=30%  Similarity=0.441  Sum_probs=29.0

Q ss_pred             CCeEEEechhhhhhhhcccceecccccccCCCC
Q psy17793        344 HPVQIIVDQPCALAVLRGADVFAPGVLAMPLGK  376 (397)
Q Consensus       344 ~~~~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~  376 (397)
                      ....++||..+..++++||++++|||++++.++
T Consensus        75 ~~~~v~Vd~~a~~~i~~Ga~lm~pGV~~~~~~~  107 (160)
T PRK14560         75 EKRRVVVDAGAVKFVSNGADVMAPGIVEADEDI  107 (160)
T ss_pred             cCCEEEEeccHHHHHHCCCceecCeeeeCCCCC
Confidence            346899999999999999999999999987654

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=93.78  E-value=0.12  Score=47.51  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE  128 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~  128 (397)
                      -.+|+.|||.+||+|..+. +|..+  +-+-+++|+++..++.+++
T Consensus       189 t~~gdiVlDpF~GSGTT~~-aa~~l--~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  189 TNPGDIVLDPFAGSGTTAV-AAEEL--GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-TT-EEEETT-TTTHHHH-HHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred             hccceeeehhhhccChHHH-HHHHc--CCeEEEEeCCHHHHHHhcC
Confidence            3679999999999997554 44444  3479999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG3987|consensus

Probab=93.57  E-value=0.023  Score=52.72  Aligned_cols=39  Identities=21%  Similarity=0.187  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE  127 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~  127 (397)
                      ..++||+|||-|-.|.+++-..   .+|+|-|.|..+..+++
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~  151 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLK  151 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHh
Confidence            4699999999999999888754   46999999888876654

>PRK13699 putative methylase; Provisional

Probab=93.43  E-value=0.2  Score=47.39  Aligned_cols=49  Identities=20%  Similarity=0.228  Sum_probs=39.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ  134 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g  134 (397)
                      -.+|+.|||.++|+|.... .|..+  +-..+|+|+++.-.+.+.++++...
T Consensus       161 s~~g~~vlDpf~Gsgtt~~-aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~~  209 (227)
T PRK13699        161 THPNAIVLDPFAGSGSTCV-AALQS--GRRYIGIELLEQYHRAGQQRLAAVQ  209 (227)
T ss_pred             CCCCCEEEeCCCCCCHHHH-HHHHc--CCCEEEEecCHHHHHHHHHHHHHHH
Confidence            3689999999999997664 33333  3478899999999999999987754

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=93.39  E-value=0.62  Score=46.13  Aligned_cols=51  Identities=12%  Similarity=0.195  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         82 DVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        82 ~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...+|++||=.|+|+ |..++++|..+ +..+|+++|.++++++.++    ++|.+.
T Consensus       166 ~~~~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~----~lGa~~  217 (343)
T PRK09880        166 GDLQGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLAR----EMGADK  217 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHH----HcCCcE
Confidence            345789999877532 23344555554 2347999999999987664    467654

>PRK13699 putative methylase; Provisional

Probab=92.94  E-value=0.12  Score=48.76  Aligned_cols=91  Identities=14%  Similarity=0.089  Sum_probs=50.6

Q ss_pred             EEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       139 ~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      +++++|..+...         .++++++|+|+.|||+-- |.+........    ..   .+.+.-.+.+.+        
T Consensus         3 ~l~~gD~le~l~---------~lpd~SVDLIiTDPPY~i-~~~~~~~~~~~----~~---~~~ew~~~~l~E--------   57 (227)
T PRK13699          3 RFILGNCIDVMA---------RFPDNAVDFILTDPPYLV-GFRDRQGRTIA----GD---KTDEWLQPACNE--------   57 (227)
T ss_pred             eEEechHHHHHH---------hCCccccceEEeCCCccc-ccccCCCcccc----cc---cHHHHHHHHHHH--------
Confidence            567788876542         357789999999999842 21100000011    01   111223567788        


Q ss_pred             cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793        219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                         +.++|||||.++. -|+.+.   ...+...+++. ++.+..
T Consensus        58 ---~~RVLKpgg~l~i-f~~~~~---~~~~~~al~~~-GF~l~~   93 (227)
T PRK13699         58 ---MYRVLKKDALMVS-FYGWNR---VDRFMAAWKNA-GFSVVG   93 (227)
T ss_pred             ---HHHHcCCCCEEEE-Eecccc---HHHHHHHHHHC-CCEEee
Confidence               9999999987753 355432   22233344554 466544

>PRK10458 DNA cytosine methylase; Provisional

Probab=92.94  E-value=0.37  Score=50.40  Aligned_cols=90  Identities=16%  Similarity=0.195  Sum_probs=55.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch-----hhH-HHh
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ-----IDI-ERM  159 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~-----~d~-~~~  159 (397)
                      .-+++|++||.||.+.-+-..  +.-.|.++|+++.+.+..+.|...  ......+..|...+.....     .+. ...
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~  163 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEHI  163 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhhh
Confidence            348999999999999766442  334689999999999988887421  1122344456555421100     000 000


Q ss_pred             hhcccCccEEEEcCCCCCCC
Q psy17793        160 KLQKESFDRILLDAPCSGFG  179 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G  179 (397)
                      ......+|+++.-|||-+..
T Consensus       164 ~~~~p~~DvL~gGpPCQ~FS  183 (467)
T PRK10458        164 RQHIPDHDVLLAGFPCQPFS  183 (467)
T ss_pred             hccCCCCCEEEEcCCCCccc
Confidence            00113589999999997753

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=92.74  E-value=0.2  Score=47.45  Aligned_cols=83  Identities=17%  Similarity=0.202  Sum_probs=55.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHHHHh-CCCc-EEEEEc-ccccccccchhhHHH
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMN---DTGTLIALDKSKPRVTKLEETIKKL-QLSS-IQTHVY-DSTRINTSSQIDIER  158 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~---~~~~V~avD~s~~rl~~l~~n~~~~-g~~~-v~~~~~-D~~~~~~~~~~d~~~  158 (397)
                      ++-++||+|.|.--    +--+++   -+-+.++.|+|+..++.++.++..+ ++.+ |++... |...+...       
T Consensus        78 ~~i~~LDIGvGAnC----IYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~g-------  146 (292)
T COG3129          78 KNIRILDIGVGANC----IYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNG-------  146 (292)
T ss_pred             CceEEEeeccCccc----ccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccc-------
Confidence            45588999887432    333332   2467899999999999999999988 6655 665543 22222111       


Q ss_pred             hhhcccCccEEEEcCCCCCC
Q psy17793        159 MKLQKESFDRILLDAPCSGF  178 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~  178 (397)
                      ..-.++.||.++||||--++
T Consensus       147 iig~nE~yd~tlCNPPFh~s  166 (292)
T COG3129         147 IIGKNERYDATLCNPPFHDS  166 (292)
T ss_pred             cccccceeeeEecCCCcchh
Confidence            01135789999999996554

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=92.38  E-value=0.38  Score=48.25  Aligned_cols=45  Identities=31%  Similarity=0.479  Sum_probs=35.5

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q psy17793         83 VQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEE  128 (397)
Q Consensus        83 ~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~  128 (397)
                      ..++.+|+=+|||| |..+.++|... +..+|+++|.++.|++.+++
T Consensus       166 ~~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~  211 (350)
T COG1063         166 VRPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKE  211 (350)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHH
Confidence            45555999999999 55555666654 67899999999999999876

>KOG1562|consensus

Probab=92.23  E-value=0.68  Score=45.36  Aligned_cols=124  Identities=17%  Similarity=0.179  Sum_probs=85.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC--C--CcEEEEEcccccccccchhhHHHhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ--L--SSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g--~--~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      .-+.||=+|-|-|+..-..+.- ..-+.+.-+|++..-++..++-+..+-  .  +.|.+..+|+..+...         
T Consensus       121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~---------  190 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLED---------  190 (337)
T ss_pred             CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHH---------
Confidence            4468999999999987655543 234578899999999888777666542  2  4589999999887532         


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS  240 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~  240 (397)
                      ...+.||+|++|-.                   .-.....+..|+.....           ..+.||++|+++..     
T Consensus       191 ~~~~~~dVii~dss-------------------dpvgpa~~lf~~~~~~~-----------v~~aLk~dgv~~~q-----  235 (337)
T KOG1562|consen  191 LKENPFDVIITDSS-------------------DPVGPACALFQKPYFGL-----------VLDALKGDGVVCTQ-----  235 (337)
T ss_pred             hccCCceEEEEecC-------------------CccchHHHHHHHHHHHH-----------HHHhhCCCcEEEEe-----
Confidence            33578999999754                   12222233456777777           78889999998764     


Q ss_pred             ccccHHHHHHHHHH
Q psy17793        241 VEENEAVIAWILHR  254 (397)
Q Consensus       241 ~eEnE~vV~~~L~~  254 (397)
                       +|+..+-..++++
T Consensus       236 -~ec~wl~~~~i~e  248 (337)
T KOG1562|consen  236 -GECMWLHLDYIKE  248 (337)
T ss_pred             -cceehHHHHHHHH
Confidence             3555555555544

>KOG3045|consensus

Probab=92.21  E-value=0.53  Score=45.33  Aligned_cols=87  Identities=18%  Similarity=0.345  Sum_probs=58.5

Q ss_pred             cCCCCCC-eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793         81 LDVQPGQ-KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        81 L~~~~g~-~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      +...++. .|-|+|||-+-.+.      ...-.|+++|+-+.               |=+++.+|.++.+          
T Consensus       175 ik~r~~~~vIaD~GCGEakiA~------~~~~kV~SfDL~a~---------------~~~V~~cDm~~vP----------  223 (325)
T KOG3045|consen  175 IKRRPKNIVIADFGCGEAKIAS------SERHKVHSFDLVAV---------------NERVIACDMRNVP----------  223 (325)
T ss_pred             HHhCcCceEEEecccchhhhhh------ccccceeeeeeecC---------------CCceeeccccCCc----------
Confidence            3334444 67799999876543      23457999997432               2356778888763          


Q ss_pred             hhcccCccEEEEcCCCCC-CCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        160 KLQKESFDRILLDAPCSG-FGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg-~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                       ..++++|+++.   |-+ .|+           ++           ...+.+           |.++||+||.+...
T Consensus       224 -l~d~svDvaV~---CLSLMgt-----------n~-----------~df~kE-----------a~RiLk~gG~l~IA  263 (325)
T KOG3045|consen  224 -LEDESVDVAVF---CLSLMGT-----------NL-----------ADFIKE-----------ANRILKPGGLLYIA  263 (325)
T ss_pred             -CccCcccEEEe---eHhhhcc-----------cH-----------HHHHHH-----------HHHHhccCceEEEE
Confidence             56789999887   421 111           12           566777           99999999999886

>KOG1501|consensus

Probab=91.17  E-value=0.44  Score=48.93  Aligned_cols=55  Identities=20%  Similarity=0.114  Sum_probs=45.9

Q ss_pred             eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcc
Q psy17793         88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYD  144 (397)
Q Consensus        88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D  144 (397)
                      .|||+|+|+|..+.+++...  +-.|+|+|.-+.+.+.+++-..++|.+ +|.++.--
T Consensus        69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkr  124 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKR  124 (636)
T ss_pred             EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccc
Confidence            68999999999998777653  457999999999999999999999985 36665433

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=91.03  E-value=0.92  Score=37.90  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=28.6

Q ss_pred             CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         96 PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        96 pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      -|..++++|..++  .+|+++|.++.+++.++    ++|.+.
T Consensus         2 vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~----~~Ga~~   37 (130)
T PF00107_consen    2 VGLMAIQLAKAMG--AKVIATDRSEEKLELAK----ELGADH   37 (130)
T ss_dssp             HHHHHHHHHHHTT--SEEEEEESSHHHHHHHH----HTTESE
T ss_pred             hHHHHHHHHHHcC--CEEEEEECCHHHHHHHH----hhcccc
Confidence            4778889998874  89999999999987764    567543

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=90.62  E-value=0.26  Score=45.13  Aligned_cols=79  Identities=16%  Similarity=0.170  Sum_probs=40.5

Q ss_pred             ccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccH
Q psy17793        166 FDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE  245 (397)
Q Consensus       166 fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE  245 (397)
                      +|+|+.|||+-.............    ......+......++.+           +.++|||||.+++. |+-  .+..
T Consensus         1 VdliitDPPY~~~~~~~~~~~~~~----~~~~~~y~~~~~~~~~~-----------~~rvLk~~g~~~i~-~~~--~~~~   62 (231)
T PF01555_consen    1 VDLIITDPPYNIGKDYNNYFDYGD----NKNHEEYLEWMEEWLKE-----------CYRVLKPGGSIFIF-IDD--REIA   62 (231)
T ss_dssp             EEEEEE---TSSSCS-----CSCH----CCHHHHHHHHHHHHHHH-----------HHHHEEEEEEEEEE-E-C--CEEC
T ss_pred             CCEEEECCCCCCCCCcchhhhccC----CCCHHHHHHHHHHHHHH-----------HHhhcCCCeeEEEE-ecc--hhhh
Confidence            589999999754322100000001    12344444445778888           99999999998764 332  2222


Q ss_pred             -HHHHHHHHHCCCcEEEe
Q psy17793        246 -AVIAWILHRHPEVELVQ  262 (397)
Q Consensus       246 -~vV~~~L~~~~~~~l~~  262 (397)
                       .....+++.++++.+..
T Consensus        63 ~~~~~~~~~~~g~~~~~~   80 (231)
T PF01555_consen   63 GFLFELALEIFGGFFLRN   80 (231)
T ss_dssp             THHHHHHHHHHTT-EEEE
T ss_pred             HHHHHHHHHHhhhhheec
Confidence             25555566553366554

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=90.57  E-value=1  Score=43.17  Aligned_cols=74  Identities=24%  Similarity=0.152  Sum_probs=51.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .+.++|+|+|||-==.++-.... ..+..++|+|+|+..++.+..-+..+|.. .++...|...-.            ..
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~-~~~~v~Dl~~~~------------~~  169 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVP-HDARVRDLLSDP------------PK  169 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-C-EEEEEE-TTTSH------------TT
T ss_pred             CCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCC-cceeEeeeeccC------------CC
Confidence            34679999999987777543332 24569999999999999999999999964 566666765431            34


Q ss_pred             cCccEEEE
Q psy17793        164 ESFDRILL  171 (397)
Q Consensus       164 ~~fD~Il~  171 (397)
                      ...|+.|+
T Consensus       170 ~~~DlaLl  177 (251)
T PF07091_consen  170 EPADLALL  177 (251)
T ss_dssp             SEESEEEE
T ss_pred             CCcchhhH
Confidence            56899887

>KOG0822|consensus

Probab=90.44  E-value=0.5  Score=49.58  Aligned_cols=61  Identities=15%  Similarity=0.098  Sum_probs=47.2

Q ss_pred             eEEEEcCCCCh---HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEccccccc
Q psy17793         88 KVLDMCAAPGN---KLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRIN  149 (397)
Q Consensus        88 ~VLDlcagpG~---kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~  149 (397)
                      .|+=+|||-|-   .++.+|.....+.+++|+|++|.++..++. .+....+ .|+++..|.+.+.
T Consensus       370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~  434 (649)
T KOG0822|consen  370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWN  434 (649)
T ss_pred             EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccC
Confidence            56788999984   456667766677889999999999999875 3333333 4999999999984

>PRK05599 hypothetical protein; Provisional

Probab=90.37  E-value=5  Score=37.60  Aligned_cols=83  Identities=10%  Similarity=0.181  Sum_probs=54.9

Q ss_pred             eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcccCc
Q psy17793         88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQKESF  166 (397)
Q Consensus        88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~~~f  166 (397)
                      .+|=.|+ ++|.+..+|..+..+.+|+.++.++.+++.+.+.++..|-..+.++..|+.+...-  .+. .......+..
T Consensus         2 ~vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v--~~~~~~~~~~~g~i   78 (246)
T PRK05599          2 SILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTH--RELVKQTQELAGEI   78 (246)
T ss_pred             eEEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHH--HHHHHHHHHhcCCC
Confidence            3565555 56678888876656788999999999999888888776654577888888765211  000 0011112578


Q ss_pred             cEEEEcC
Q psy17793        167 DRILLDA  173 (397)
Q Consensus       167 D~Il~Dp  173 (397)
                      |.++.++
T Consensus        79 d~lv~na   85 (246)
T PRK05599         79 SLAVVAF   85 (246)
T ss_pred             CEEEEec
Confidence            9999865

>KOG1331|consensus

Probab=90.31  E-value=0.53  Score=45.77  Aligned_cols=97  Identities=22%  Similarity=0.260  Sum_probs=63.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      ..|..++|.|||-|-.+.     ..+...++++|++..-+..+++    -|..  .+..+|+.+++           +..
T Consensus        44 ~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~----~~~~--~~~~ad~l~~p-----------~~~  101 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKR----SGGD--NVCRADALKLP-----------FRE  101 (293)
T ss_pred             CCcceeeecccCCcccCc-----CCCcceeeecchhhhhcccccc----CCCc--eeehhhhhcCC-----------CCC
Confidence            348899999999996552     2245578999988776655442    2321  56778888774           456


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHH--HHHHHHHHHhhhhccccccccccccCCcE-EEEE
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN--IQKKLLQAVYRFVSLFDWQGIPLLKKDGI-LVYC  235 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~--~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~-lvys  235 (397)
                      .+||.++.                      -..+.+++.  .-..++++           ..+.|+|||. ++|+
T Consensus       102 ~s~d~~ls----------------------iavihhlsT~~RR~~~l~e-----------~~r~lrpgg~~lvyv  143 (293)
T KOG1331|consen  102 ESFDAALS----------------------IAVIHHLSTRERRERALEE-----------LLRVLRPGGNALVYV  143 (293)
T ss_pred             Cccccchh----------------------hhhhhhhhhHHHHHHHHHH-----------HHHHhcCCCceEEEE
Confidence            78998875                      122222221  11566777           8889999996 6775

>KOG3201|consensus

Probab=89.76  E-value=0.28  Score=43.99  Aligned_cols=48  Identities=15%  Similarity=0.160  Sum_probs=33.1

Q ss_pred             CCCeEEEEcCCCChHH-HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q psy17793         85 PGQKVLDMCAAPGNKL-THIALLMNDTGTLIALDKSKPRVTKLEETIKKL  133 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt-~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~  133 (397)
                      .|.+||++|+|--+.+ +++|-. .+...|+--|-+...++.+++...++
T Consensus        29 rg~~ilelgggft~laglmia~~-a~~~~v~ltdgne~svrnv~ki~~~n   77 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACK-APDSSVWLTDGNEESVRNVEKIRNSN   77 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeee-cCCceEEEecCCHHHHHHHHHHHhcc
Confidence            3678999997744333 333333 35678999999999988887766555

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.45  E-value=9.4  Score=35.98  Aligned_cols=86  Identities=12%  Similarity=-0.048  Sum_probs=51.4

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAP-GNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagp-G~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|..+|=.|+++ ++.+..+|..+. .+.+|+.++.+....+.+++..+..+  .+.++..|..+...-. ..+.-..  
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~--   84 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAE--   84 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHH--
Confidence            477899999998 488888886543 45678888888655444444444433  3456677876542100 0011011  


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-++.|+++.++-
T Consensus        85 ~~g~ld~lv~nAg   97 (258)
T PRK07533         85 EWGRLDFLLHSIA   97 (258)
T ss_pred             HcCCCCEEEEcCc
Confidence            1257899998763

>PRK08339 short chain dehydrogenase; Provisional

Probab=89.20  E-value=9.4  Score=36.15  Aligned_cols=86  Identities=15%  Similarity=0.192  Sum_probs=53.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .|..+|=.|++ |+.+..+|..+ ..+.+|+.++.++..++.+.+.++...-.++.++..|..+...-... ..... .-
T Consensus         7 ~~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~-~~~~~-~~   83 (263)
T PRK08339          7 SGKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERT-VKELK-NI   83 (263)
T ss_pred             CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHH-HHHHH-hh
Confidence            36677766655 56677777654 34568999999999888877776554223577888888764210000 00000 12


Q ss_pred             cCccEEEEcC
Q psy17793        164 ESFDRILLDA  173 (397)
Q Consensus       164 ~~fD~Il~Dp  173 (397)
                      +.+|.++.++
T Consensus        84 g~iD~lv~na   93 (263)
T PRK08339         84 GEPDIFFFST   93 (263)
T ss_pred             CCCcEEEECC
Confidence            5689988755

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=89.16  E-value=3  Score=44.19  Aligned_cols=48  Identities=19%  Similarity=0.133  Sum_probs=36.8

Q ss_pred             CCCCCeEEEEcCCCChH-HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         83 VQPGQKVLDMCAAPGNK-LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~k-t~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      ..++++|+=+|||+=|. ++..|..++  ..|+++|.++.+++.+++    +|.+
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~  210 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAE  210 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe
Confidence            45799999999999554 455666653  479999999999887654    6765

>cd08230 glucose_DH Glucose dehydrogenase

Probab=88.96  E-value=2.3  Score=42.26  Aligned_cols=48  Identities=17%  Similarity=0.228  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeC---CHHHHHHHHHHHHHhCCC
Q psy17793         83 VQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDK---SKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        83 ~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~---s~~rl~~l~~n~~~~g~~  136 (397)
                      .++|++||=.|+|+ |..+.++|..+  +.+|++++.   ++.+++.+    +++|.+
T Consensus       170 ~~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~----~~~Ga~  221 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIV----EELGAT  221 (355)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHH----HHcCCE
Confidence            46789999887643 33455566654  347999987   67776654    456764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK05867 short chain dehydrogenase; Provisional

Probab=88.87  E-value=6.5  Score=36.71  Aligned_cols=86  Identities=13%  Similarity=0.148  Sum_probs=55.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .|..+|=.|++ |+.+.+++..+ ..+.+|+.++.+++.++.+.+.++..+ .++..+..|..+...-  ... ......
T Consensus         8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~--~~~~~~~~~~   83 (253)
T PRK05867          8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQV--TSMLDQVTAE   83 (253)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHH--HHHHHHHHHH
Confidence            36788877765 56677777654 345689999999998888877777665 3577788888654210  000 000011


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.++.++-
T Consensus        84 ~g~id~lv~~ag   95 (253)
T PRK05867         84 LGGIDIAVCNAG   95 (253)
T ss_pred             hCCCCEEEECCC
Confidence            257899998764

>PRK06172 short chain dehydrogenase; Provisional

Probab=88.50  E-value=13  Score=34.49  Aligned_cols=85  Identities=14%  Similarity=0.093  Sum_probs=54.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .+.++|=.|+ +|+.+..++..+ ..+.+|+.++.++..++.+.+.++..+ .++.++..|..+...-  .+. ......
T Consensus         6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i--~~~~~~~~~~   81 (253)
T PRK06172          6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG-GEALFVACDVTRDAEV--KALVEQTIAA   81 (253)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHH--HHHHHHHHHH
Confidence            3567888875 566777777644 345689999999998888877777665 3578888898764210  000 000011


Q ss_pred             ccCccEEEEcC
Q psy17793        163 KESFDRILLDA  173 (397)
Q Consensus       163 ~~~fD~Il~Dp  173 (397)
                      .+++|.|+..+
T Consensus        82 ~g~id~li~~a   92 (253)
T PRK06172         82 YGRLDYAFNNA   92 (253)
T ss_pred             hCCCCEEEECC
Confidence            24689999855

>PRK07677 short chain dehydrogenase; Provisional

Probab=88.13  E-value=11  Score=35.22  Aligned_cols=86  Identities=9%  Similarity=0.113  Sum_probs=52.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~~  163 (397)
                      |.++|=.|+ +|+.+.+++..+ ..+.+|++++.++.+++.+.+.++..+ .++.++..|..+...-. ..+....  .-
T Consensus         1 ~k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~--~~   76 (252)
T PRK07677          1 EKVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDE--KF   76 (252)
T ss_pred             CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHH--Hh
Confidence            346776665 455677677654 345689999999988888777776555 45778888886532000 0000001  11


Q ss_pred             cCccEEEEcCCC
Q psy17793        164 ESFDRILLDAPC  175 (397)
Q Consensus       164 ~~fD~Il~DpPC  175 (397)
                      +..|.|+.++-.
T Consensus        77 ~~id~lI~~ag~   88 (252)
T PRK07677         77 GRIDALINNAAG   88 (252)
T ss_pred             CCccEEEECCCC
Confidence            468999987643

>PRK06914 short chain dehydrogenase; Provisional

Probab=88.00  E-value=12  Score=35.46  Aligned_cols=87  Identities=15%  Similarity=0.103  Sum_probs=53.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      +..+|=.| |+|+.+.+++..+ ..+..|++++.++..++.+.+.+...+. .++.++..|.++...-.  ........-
T Consensus         3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~--~~~~~~~~~   79 (280)
T PRK06914          3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIH--NFQLVLKEI   79 (280)
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHH--HHHHHHHhc
Confidence            44566666 5566777777643 4456899999999888877766666554 35888888987642100  000000112


Q ss_pred             cCccEEEEcCCC
Q psy17793        164 ESFDRILLDAPC  175 (397)
Q Consensus       164 ~~fD~Il~DpPC  175 (397)
                      +..|.|+..+-.
T Consensus        80 ~~id~vv~~ag~   91 (280)
T PRK06914         80 GRIDLLVNNAGY   91 (280)
T ss_pred             CCeeEEEECCcc
Confidence            468999986643

>PRK06701 short chain dehydrogenase; Provisional

Probab=87.99  E-value=12  Score=36.10  Aligned_cols=86  Identities=12%  Similarity=0.064  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCH-HHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSK-PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~-~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~  161 (397)
                      .+.++|=.|+ +|+.+.+++..+ ..+.+|+.++.++ ...+.+...++..+ .++.++..|..+...-  .+. .....
T Consensus        45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~--~~~~~~i~~  120 (290)
T PRK06701         45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFC--KDAVEETVR  120 (290)
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHH--HHHHHHHHH
Confidence            4667888875 566677777654 3456788888775 34555555555544 3577888888754210  000 00000


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+.+|.|+.++-
T Consensus       121 ~~~~iD~lI~~Ag  133 (290)
T PRK06701        121 ELGRLDILVNNAA  133 (290)
T ss_pred             HcCCCCEEEECCc
Confidence            1146899998653

>PRK06940 short chain dehydrogenase; Provisional

Probab=87.90  E-value=12  Score=35.81  Aligned_cols=81  Identities=12%  Similarity=0.131  Sum_probs=52.6

Q ss_pred             eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcccCc
Q psy17793         88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQKESF  166 (397)
Q Consensus        88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~~~f  166 (397)
                      .+|=.|+  |+.+.++|..+..+.+|+.+|.++..++.+.+.++..+. ++.++..|..+...-  ... .... ..+.+
T Consensus         4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i--~~~~~~~~-~~g~i   77 (275)
T PRK06940          4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESV--KALAATAQ-TLGPV   77 (275)
T ss_pred             EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHH--HHHHHHHH-hcCCC
Confidence            4554554  689999998776667899999998887777666665443 467788888764210  000 0001 12568


Q ss_pred             cEEEEcCC
Q psy17793        167 DRILLDAP  174 (397)
Q Consensus       167 D~Il~DpP  174 (397)
                      |.++.++-
T Consensus        78 d~li~nAG   85 (275)
T PRK06940         78 TGLVHTAG   85 (275)
T ss_pred             CEEEECCC
Confidence            99998764

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=87.87  E-value=1.2  Score=42.59  Aligned_cols=74  Identities=16%  Similarity=0.223  Sum_probs=40.6

Q ss_pred             EcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEEEE
Q psy17793         92 MCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILL  171 (397)
Q Consensus        92 lcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~  171 (397)
                      +...||+-.+ ++.++...-+.+.+|+.+.-.+.+++++...  .+|++...|+......     .-++  ..+=-+||+
T Consensus        62 l~~YPGSP~i-a~~llR~qDrl~l~ELHp~d~~~L~~~~~~~--~~v~v~~~DG~~~l~a-----llPP--~~rRglVLI  131 (245)
T PF04378_consen   62 LRFYPGSPAI-AARLLREQDRLVLFELHPQDFEALKKNFRRD--RRVRVHHRDGYEGLKA-----LLPP--PERRGLVLI  131 (245)
T ss_dssp             --EEE-HHHH-HHHHS-TTSEEEEE--SHHHHHHHTTS--TT--S-EEEE-S-HHHHHHH-----H-S---TTS-EEEEE
T ss_pred             cCcCCCCHHH-HHHhCCccceEEEEecCchHHHHHHHHhccC--CccEEEeCchhhhhhh-----hCCC--CCCCeEEEE
Confidence            5578888765 4445567789999999999999999988753  5799999998764311     0111  123469999


Q ss_pred             cCCC
Q psy17793        172 DAPC  175 (397)
Q Consensus       172 DpPC  175 (397)
                      |||+
T Consensus       132 DPpY  135 (245)
T PF04378_consen  132 DPPY  135 (245)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            9993

; PDB: 2OO3_A.

>KOG2352|consensus

Probab=87.70  E-value=3.2  Score=43.33  Aligned_cols=114  Identities=17%  Similarity=0.157  Sum_probs=74.0

Q ss_pred             CCCC-eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQ-KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~-~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ++-. ++|-+|||.=-.+.++-+  ++--.|+.+|.|+.+++.....-. ..-.-..+...|.+...           |+
T Consensus        46 ~p~~~~~l~lGCGNS~l~e~ly~--~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~-----------fe  111 (482)
T KOG2352|consen   46 SPSDFKILQLGCGNSELSEHLYK--NGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLV-----------FE  111 (482)
T ss_pred             chhhceeEeecCCCCHHHHHHHh--cCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhcc-----------CC
Confidence            3444 899999998877777665  334569999999999988765432 12233778888887764           67


Q ss_pred             ccCccEEEEcCCCCCCC--CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        163 KESFDRILLDAPCSGFG--QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G--~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                      .++||+|+.=    |+.  .-.+....|.         .  ..-...+..           ..++|++||+.+-.||
T Consensus       112 dESFdiVIdk----GtlDal~~de~a~~~---------~--~~v~~~~~e-----------Vsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  112 DESFDIVIDK----GTLDALFEDEDALLN---------T--AHVSNMLDE-----------VSRVLAPGGKYISVTL  162 (482)
T ss_pred             CcceeEEEec----CccccccCCchhhhh---------h--HHhhHHHhh-----------HHHHhccCCEEEEEEe
Confidence            7899999851    111  0000000110         0  111345666           8899999999999988

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=87.61  E-value=14  Score=34.81  Aligned_cols=88  Identities=14%  Similarity=0.011  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793         85 PGQKVLDMCAAP-GNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagp-G~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~  161 (397)
                      .|..+|=.|+++ ++.+..+|..+. .+.+|+.++.+....+.+++..+...-.++.++..|..+...-  ... .....
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v--~~~~~~~~~   83 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEI--TACFETIKE   83 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHH--HHHHHHHHH
Confidence            467899999884 888888887653 4567887765432223333333333223567778888754210  000 00001


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+++|.++.++-
T Consensus        84 ~~g~ld~lv~nag   96 (257)
T PRK08594         84 EVGVIHGVAHCIA   96 (257)
T ss_pred             hCCCccEEEECcc
Confidence            1267899988663

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=87.59  E-value=3.5  Score=41.02  Aligned_cols=51  Identities=18%  Similarity=0.197  Sum_probs=34.2

Q ss_pred             cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      ...++|++||=.|+|+ |..+.++|..+ +..+|+++|.++.+.+.++    ++|.+
T Consensus       172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~----~~Ga~  223 (358)
T TIGR03451       172 GGVKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAR----EFGAT  223 (358)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCc
Confidence            3567899999886533 33344555554 2235999999999988774    46764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=87.59  E-value=1.1  Score=38.39  Aligned_cols=78  Identities=18%  Similarity=0.186  Sum_probs=46.9

Q ss_pred             EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcc
Q psy17793        138 IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL  217 (397)
Q Consensus       138 v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~  217 (397)
                      +++..+|+.....          .....||.|.+|+=  +-..+|+   .|+               .+++..       
T Consensus        33 L~L~~gDa~~~l~----------~l~~~~Da~ylDgF--sP~~nPe---lWs---------------~e~~~~-------   75 (124)
T PF05430_consen   33 LTLWFGDAREMLP----------QLDARFDAWYLDGF--SPAKNPE---LWS---------------EELFKK-------   75 (124)
T ss_dssp             EEEEES-HHHHHH----------HB-T-EEEEEE-SS---TTTSGG---GSS---------------HHHHHH-------
T ss_pred             EEEEEcHHHHHHH----------hCcccCCEEEecCC--CCcCCcc---cCC---------------HHHHHH-------
Confidence            4566677765431          12368999999972  1123444   355               455666       


Q ss_pred             ccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecC
Q psy17793        218 FDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL  264 (397)
Q Consensus       218 ~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~  264 (397)
                          ..+++++||+++--|++       ..|+..|... +|.+....
T Consensus        76 ----l~~~~~~~~~l~Tys~a-------~~Vr~~L~~a-GF~v~~~~  110 (124)
T PF05430_consen   76 ----LARLSKPGGTLATYSSA-------GAVRRALQQA-GFEVEKVP  110 (124)
T ss_dssp             ----HHHHEEEEEEEEES--B-------HHHHHHHHHC-TEEEEEEE
T ss_pred             ----HHHHhCCCcEEEEeech-------HHHHHHHHHc-CCEEEEcC
Confidence                77889999988654443       4688999888 68876543

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=87.53  E-value=4.2  Score=39.03  Aligned_cols=123  Identities=12%  Similarity=0.149  Sum_probs=72.8

Q ss_pred             CeEEEEcCCCChHHHHHHHHcC----CCcEEEEEeCCH--------------------------HHHHHHHHHHHHhCC-
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMN----DTGTLIALDKSK--------------------------PRVTKLEETIKKLQL-  135 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~----~~~~V~avD~s~--------------------------~rl~~l~~n~~~~g~-  135 (397)
                      ..|+++|+.-|+.++.++..+.    ..-+|+++|.=.                          ..++..++|+.++|+ 
T Consensus        76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~  155 (248)
T PF05711_consen   76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLL  155 (248)
T ss_dssp             SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTS
T ss_pred             eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCCC
Confidence            3699999999998877766542    234688887421                          135566677777776 


Q ss_pred             -CcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhh
Q psy17793        136 -SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRF  214 (397)
Q Consensus       136 -~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f  214 (397)
                       ++++++.+++.+....         .+.+++-++-+|.-                      +  +... +..|+.    
T Consensus       156 ~~~v~~vkG~F~dTLp~---------~p~~~IAll~lD~D----------------------l--YesT-~~aLe~----  197 (248)
T PF05711_consen  156 DDNVRFVKGWFPDTLPD---------APIERIALLHLDCD----------------------L--YEST-KDALEF----  197 (248)
T ss_dssp             STTEEEEES-HHHHCCC----------TT--EEEEEE-------------------------S--HHHH-HHHHHH----
T ss_pred             cccEEEECCcchhhhcc---------CCCccEEEEEEecc----------------------c--hHHH-HHHHHH----
Confidence             4699999888654321         22344555555431                      1  1111 566777    


Q ss_pred             hccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCC
Q psy17793        215 VSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP  256 (397)
Q Consensus       215 ~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~  256 (397)
                             .+..|.+||+|++-.-..  ..-...|..+.+++.
T Consensus       198 -------lyprl~~GGiIi~DDY~~--~gcr~AvdeF~~~~g  230 (248)
T PF05711_consen  198 -------LYPRLSPGGIIIFDDYGH--PGCRKAVDEFRAEHG  230 (248)
T ss_dssp             -------HGGGEEEEEEEEESSTTT--HHHHHHHHHHHHHTT
T ss_pred             -------HHhhcCCCeEEEEeCCCC--hHHHHHHHHHHHHcC
Confidence                   888999999999875444  333456788888874

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PRK07102 short chain dehydrogenase; Provisional

Probab=87.34  E-value=13  Score=34.43  Aligned_cols=82  Identities=15%  Similarity=0.150  Sum_probs=52.7

Q ss_pred             eEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793         88 KVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF  166 (397)
Q Consensus        88 ~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f  166 (397)
                      +||=.| |+|+.+.+++..+. .+.+|++++.++...+.+.+.+...+-.++.++..|..+...-  .+.  .......+
T Consensus         3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~--~~~--~~~~~~~~   77 (243)
T PRK07102          3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASH--AAF--LDSLPALP   77 (243)
T ss_pred             EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHH--HHH--HHHHhhcC
Confidence            566555 56788888887553 4558999999998887766666554445788889998765210  000  00011357


Q ss_pred             cEEEEcCC
Q psy17793        167 DRILLDAP  174 (397)
Q Consensus       167 D~Il~DpP  174 (397)
                      |.|+.++.
T Consensus        78 d~vv~~ag   85 (243)
T PRK07102         78 DIVLIAVG   85 (243)
T ss_pred             CEEEECCc
Confidence            99998764

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=87.23  E-value=1.6  Score=42.25  Aligned_cols=70  Identities=16%  Similarity=0.262  Sum_probs=50.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ..+|..-.|+||+|||.|-++..   ..-.|+|+|.-+-+-     ++-..  ..|+-...|..++-.           .
T Consensus       209 L~~~M~avDLGAcPGGWTyqLVk---r~m~V~aVDng~ma~-----sL~dt--g~v~h~r~DGfk~~P-----------~  267 (358)
T COG2933         209 LAPGMWAVDLGACPGGWTYQLVK---RNMRVYAVDNGPMAQ-----SLMDT--GQVTHLREDGFKFRP-----------T  267 (358)
T ss_pred             hcCCceeeecccCCCccchhhhh---cceEEEEeccchhhh-----hhhcc--cceeeeeccCccccc-----------C
Confidence            45889999999999999988776   457899999765432     22222  347778888887731           2


Q ss_pred             ccCccEEEEcC
Q psy17793        163 KESFDRILLDA  173 (397)
Q Consensus       163 ~~~fD~Il~Dp  173 (397)
                      ..+.|-.+||-
T Consensus       268 r~~idWmVCDm  278 (358)
T COG2933         268 RSNIDWMVCDM  278 (358)
T ss_pred             CCCCceEEeeh
Confidence            45789888864

>PRK12939 short chain dehydrogenase; Provisional

Probab=86.91  E-value=15  Score=33.73  Aligned_cols=85  Identities=12%  Similarity=0.075  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      ++..+|=.| |+|+.+.+++..+. .+.+|++++.++..++.+.+.++..+ .++.++..|..+...-  ... ......
T Consensus         6 ~~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~--~~~~~~~~~~   81 (250)
T PRK12939          6 AGKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASV--QRFFDAAAAA   81 (250)
T ss_pred             CCCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHH--HHHHHHHHHH
Confidence            356777444 57888888887653 34689999999888887776666554 3588888898754210  000 000001


Q ss_pred             ccCccEEEEcC
Q psy17793        163 KESFDRILLDA  173 (397)
Q Consensus       163 ~~~fD~Il~Dp  173 (397)
                      -+.+|.|+..+
T Consensus        82 ~~~id~vi~~a   92 (250)
T PRK12939         82 LGGLDGLVNNA   92 (250)
T ss_pred             cCCCCEEEECC
Confidence            14689999854

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=86.85  E-value=4.9  Score=37.71  Aligned_cols=93  Identities=10%  Similarity=0.154  Sum_probs=60.8

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCCh--HHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGN--KLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDS  145 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~--kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~  145 (397)
                      +...+-|++.+..=..-..+++.+++-|.  .|+.||... ..+|+++++-.+++.+...++.+..+|+.+ ++++.+|.
T Consensus        26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~  105 (218)
T PF07279_consen   26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA  105 (218)
T ss_pred             CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence            33344455444433345688999776443  344443321 457899999999999888899998888866 68888875


Q ss_pred             cc-ccccchhhHHHhhhcccCccEEEEcC
Q psy17793        146 TR-INTSSQIDIERMKLQKESFDRILLDA  173 (397)
Q Consensus       146 ~~-~~~~~~~d~~~~~~~~~~fD~Il~Dp  173 (397)
                      .. +.         +.+  ..+|.+++|-
T Consensus       106 ~e~~~---------~~~--~~iDF~vVDc  123 (218)
T PF07279_consen  106 PEEVM---------PGL--KGIDFVVVDC  123 (218)
T ss_pred             HHHHH---------hhc--cCCCEEEEeC
Confidence            32 22         113  4689999974

The function of this family is unknown.

>PRK07576 short chain dehydrogenase; Provisional

Probab=86.83  E-value=17  Score=34.33  Aligned_cols=85  Identities=11%  Similarity=0.048  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      ++.++|=.|+ +|+.+.+++..+. .+.+|++++.++..++.+.+.+...+. ++.++..|.++...-  ... ......
T Consensus         8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i--~~~~~~~~~~   83 (264)
T PRK07576          8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRDYAAV--EAAFAQIADE   83 (264)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCCHHHH--HHHHHHHHHH
Confidence            4678888875 6777777776443 455899999998888777666666543 467778888653200  000 000001


Q ss_pred             ccCccEEEEcC
Q psy17793        163 KESFDRILLDA  173 (397)
Q Consensus       163 ~~~fD~Il~Dp  173 (397)
                      .+.+|.++.++
T Consensus        84 ~~~iD~vi~~a   94 (264)
T PRK07576         84 FGPIDVLVSGA   94 (264)
T ss_pred             cCCCCEEEECC
Confidence            24689999866

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=86.49  E-value=16  Score=33.86  Aligned_cols=91  Identities=14%  Similarity=0.113  Sum_probs=57.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMK  160 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~  160 (397)
                      ..++..||=.| |+|+.+..++..+. .+.+|++++.++...+.+.+.++..+..++.++..|..........+. ....
T Consensus         9 ~~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945          9 LLKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             ccCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence            34577888777 46777877776543 345899999999888888777777765566777777753211100000 0000


Q ss_pred             hcccCccEEEEcCC
Q psy17793        161 LQKESFDRILLDAP  174 (397)
Q Consensus       161 ~~~~~fD~Il~DpP  174 (397)
                      ...+++|.|+..+-
T Consensus        88 ~~~~~id~vi~~Ag  101 (247)
T PRK08945         88 EQFGRLDGVLHNAG  101 (247)
T ss_pred             HHhCCCCEEEECCc
Confidence            11246899998664

>KOG2940|consensus

Probab=86.45  E-value=0.52  Score=44.63  Aligned_cols=82  Identities=18%  Similarity=0.222  Sum_probs=54.9

Q ss_pred             HHHHhccCCC-CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch
Q psy17793         75 ILAGHYLDVQ-PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ  153 (397)
Q Consensus        75 ~l~~~~L~~~-~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~  153 (397)
                      .++-.+.+.+ ....++|+||+-|...-|+...  +-.+++-+|.|-.+++.++.. +..++. +.....|-..+     
T Consensus        61 rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~-qdp~i~-~~~~v~DEE~L-----  131 (325)
T KOG2940|consen   61 RLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDA-QDPSIE-TSYFVGDEEFL-----  131 (325)
T ss_pred             HHHHHHHHHhhhCcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhcc-CCCceE-EEEEecchhcc-----
Confidence            3444444443 4568999999999999998774  567899999999999887642 112221 23334444333     


Q ss_pred             hhHHHhhhcccCccEEEE
Q psy17793        154 IDIERMKLQKESFDRILL  171 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~  171 (397)
                            +|...+||+|+.
T Consensus       132 ------df~ens~DLiis  143 (325)
T KOG2940|consen  132 ------DFKENSVDLIIS  143 (325)
T ss_pred             ------cccccchhhhhh
Confidence                  367789999985

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=86.36  E-value=2.1  Score=41.47  Aligned_cols=62  Identities=8%  Similarity=0.077  Sum_probs=42.0

Q ss_pred             CeEEEEcCCC--ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793         87 QKVLDMCAAP--GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI  148 (397)
Q Consensus        87 ~~VLDlcagp--G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~  148 (397)
                      ..+||+|||-  -+-+-++|+...+..+|+-+|.+|-.+..++..+....-....++.+|.++.
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p  133 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP  133 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH
Confidence            5899999984  3446678888888999999999999999888887765422378999999865

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=86.32  E-value=6.9  Score=37.87  Aligned_cols=49  Identities=27%  Similarity=0.391  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         82 DVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        82 ~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      ..+++++||..++|. |..+.++|...  +.+|++++.++.+.+.++    ++|++
T Consensus       162 ~~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~----~~g~~  211 (338)
T cd08254         162 EVKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAK----ELGAD  211 (338)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHH----HhCCC
Confidence            467888999875542 55666667764  357999999998877664    35664

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=86.23  E-value=15  Score=34.20  Aligned_cols=86  Identities=14%  Similarity=0.159  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .|.+||=.| |+|+.+..++..+ ..+.+|+..+.++..++.+.+.++..|. ++..+..|..+...-  ... ......
T Consensus         9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~--~~~~~~~~~~   84 (255)
T PRK07523          9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAV--RAAIDAFEAE   84 (255)
T ss_pred             CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHH--HHHHHHHHHh
Confidence            467888777 4677888887754 3456899999999888877777766553 467778888754210  000 000111


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+..|.|+..+-
T Consensus        85 ~~~~d~li~~ag   96 (255)
T PRK07523         85 IGPIDILVNNAG   96 (255)
T ss_pred             cCCCCEEEECCC
Confidence            246899998664

>KOG1122|consensus

Probab=86.03  E-value=0.25  Score=50.44  Aligned_cols=60  Identities=13%  Similarity=0.071  Sum_probs=41.5

Q ss_pred             CccccCCCCCcceeeCccccCCcccCCCCeEEEechhhhhhhhcccceecccccccCCCCCCC
Q psy17793        317 PEIYIHPHLNDCIVIGPLLKLSQSVVHHPVQIIVDQPCALAVLRGADVFAPGVLAMPLGKNSY  379 (397)
Q Consensus       317 ~ev~~hp~l~dvl~i~p~~~~~~~~~~~~~~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~~~  379 (397)
                      ++..++.++-+..+++ ..+.-+++...+.  +++.+|+.+.+||+|+|+||+..|+.+..-+
T Consensus        90 ~P~L~~v~~~~~~~~~-~l~dfk~l~~~~~--~~~~~~~~l~~~~~~~y~y~~~l~~~~~e~~  149 (460)
T KOG1122|consen   90 VPDLQNVDLRIVELVP-VLGDFKNLKEPGR--LRSEYCGQLKKDGAHYYAYGVFLAEKLMELF  149 (460)
T ss_pred             CCccchhhHHhhhhhh-hhcchhccccccc--chhhHHHHHHhcccceechHHHHHHHhcccc
Confidence            3344444444444444 3433444444444  8999999999999999999999999988754

>PRK07831 short chain dehydrogenase; Provisional

Probab=85.82  E-value=20  Score=33.50  Aligned_cols=88  Identities=17%  Similarity=0.156  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKK-LQLSSIQTHVYDSTRINTSSQIDI-ERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~-~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~  161 (397)
                      .+.++|=.|++..+.+..++..+ ..+..|+.+|.++.+++...+.+++ ++..++.++..|..+...-  ... .....
T Consensus        16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~--~~~~~~~~~   93 (262)
T PRK07831         16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQV--DALIDAAVE   93 (262)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHH--HHHHHHHHH
Confidence            46678877765325666666544 2456799999999888887777665 4545678888888754210  000 00000


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      ..+..|.++.++-
T Consensus        94 ~~g~id~li~~ag  106 (262)
T PRK07831         94 RLGRLDVLVNNAG  106 (262)
T ss_pred             HcCCCCEEEECCC
Confidence            1146899998664

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=85.67  E-value=21  Score=30.70  Aligned_cols=84  Identities=17%  Similarity=0.097  Sum_probs=52.6

Q ss_pred             EEEEcCCCChHHHHHHHHcC--CCcEEEEEeCC--HHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         89 VLDMCAAPGNKLTHIALLMN--DTGTLIALDKS--KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        89 VLDlcagpG~kt~~lA~~~~--~~~~V~avD~s--~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      ||=.|+ +|+.+..++..+.  +...|+.+..+  ....+.+...++..+ .++.++..|..+...- ..-........+
T Consensus         3 ~lItGa-~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~-~~~~~~~~~~~~   79 (167)
T PF00106_consen    3 VLITGA-SSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESI-RALIEEVIKRFG   79 (167)
T ss_dssp             EEEETT-TSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHH-HHHHHHHHHHHS
T ss_pred             EEEECC-CCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-cccccccccccccccc-cccccccccccc
Confidence            444444 4667776766442  24578888888  788888888888777 6789999998754210 000011112236


Q ss_pred             CccEEEEcCCC
Q psy17793        165 SFDRILLDAPC  175 (397)
Q Consensus       165 ~fD~Il~DpPC  175 (397)
                      .+|.++.++..
T Consensus        80 ~ld~li~~ag~   90 (167)
T PF00106_consen   80 PLDILINNAGI   90 (167)
T ss_dssp             SESEEEEECSC
T ss_pred             ccccccccccc
Confidence            79999986653

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=85.56  E-value=22  Score=33.45  Aligned_cols=87  Identities=17%  Similarity=0.068  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch-hhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ-IDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~-~d~~~~~~~  162 (397)
                      .+.++|=.|++ |+.+.+++..+ ..+.+|+.++.++..++.+.+.+++.+. ++.++..|.++...-.. .+....  .
T Consensus         9 ~~k~~lItGa~-~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~--~   84 (265)
T PRK07097          9 KGKIALITGAS-YGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDEDGVQAMVSQIEK--E   84 (265)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHH--h
Confidence            45677777766 45566666543 3456898899999988888877776653 47788889875421000 000000  1


Q ss_pred             ccCccEEEEcCCC
Q psy17793        163 KESFDRILLDAPC  175 (397)
Q Consensus       163 ~~~fD~Il~DpPC  175 (397)
                      -+.+|.++..+-.
T Consensus        85 ~~~id~li~~ag~   97 (265)
T PRK07097         85 VGVIDILVNNAGI   97 (265)
T ss_pred             CCCCCEEEECCCC
Confidence            1468999987653

>PLN02827 Alcohol dehydrogenase-like

Probab=85.50  E-value=4.6  Score=40.74  Aligned_cols=50  Identities=22%  Similarity=0.252  Sum_probs=33.4

Q ss_pred             cCCCCCCeEEEEcCCCChHHH---HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLT---HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~---~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      .+.++|++||=.|+  |+.+.   ++|..+ +...|+++|.++.+.+.+    +++|++.
T Consensus       189 ~~~~~g~~VlV~G~--G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~~a----~~lGa~~  241 (378)
T PLN02827        189 ADVSKGSSVVIFGL--GTVGLSVAQGAKLR-GASQIIGVDINPEKAEKA----KTFGVTD  241 (378)
T ss_pred             cCCCCCCEEEEECC--CHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHH----HHcCCcE
Confidence            45678999998865  44544   455544 233689999999887766    4467643

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=85.19  E-value=3.8  Score=39.84  Aligned_cols=42  Identities=17%  Similarity=-0.080  Sum_probs=34.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET  129 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n  129 (397)
                      ...+||=-|||-|..+..+|.+   +-.+.|+|.|--|+-...-.
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fi   97 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFI   97 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHH
Confidence            4569999999999999999996   56899999999886554443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=84.72  E-value=2.4  Score=43.23  Aligned_cols=65  Identities=18%  Similarity=0.181  Sum_probs=45.0

Q ss_pred             CCcEEEe-chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy17793         64 SSMGILQ-NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIK  131 (397)
Q Consensus        64 ~g~~~~Q-d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~  131 (397)
                      .++.|-| .+....--.+|++.++++||-+++|-.+...+++   .+..+|+|||+|+.....++=.+.
T Consensus        13 ~~lvY~~~WEDp~vD~~aL~i~~~d~vl~ItSaG~N~L~yL~---~~P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   13 RGLVYAQCWEDPRVDMEALNIGPDDRVLTITSAGCNALDYLL---AGPKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             cceeeccccCCcHHHHHHhCCCCCCeEEEEccCCchHHHHHh---cCCceEEEEeCCHHHHHHHHHHHH
Confidence            3444444 2333444578899999999999988555544433   367899999999999887764443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=84.69  E-value=7.2  Score=38.81  Aligned_cols=52  Identities=23%  Similarity=0.266  Sum_probs=37.3

Q ss_pred             cCCCCCCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPGQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ..+++|++||=.|+  +-|..++++|..+  +.+|++++.++++.+.+++   .+|.+.
T Consensus       154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~---~lGa~~  207 (348)
T PLN03154        154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKN---KLGFDE  207 (348)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH---hcCCCE
Confidence            35688999988776  3566777788875  3579999999888766542   367654

>KOG1197|consensus

Probab=84.61  E-value=3  Score=40.33  Aligned_cols=65  Identities=22%  Similarity=0.175  Sum_probs=40.0

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEccccc
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTR  147 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~  147 (397)
                      -++-.+++|+.||= .++.||.++.+.+++. -+.++++.-.+.+..+.+++|    |+.. |.....|..+
T Consensus       139 ~e~y~vkpGhtVlv-haAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~  205 (336)
T KOG1197|consen  139 FEAYNVKPGHTVLV-HAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVD  205 (336)
T ss_pred             HHhcCCCCCCEEEE-EeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHH
Confidence            33446899999884 3444555555555442 245777777777777777665    7654 5555555543

>PRK08324 short chain dehydrogenase; Validated

Probab=84.53  E-value=12  Score=41.01  Aligned_cols=85  Identities=14%  Similarity=0.068  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .|+.||=.|+ +|+.+.+++..+ ..+.+|+++|.++..++.+.+.+...  .++.++..|.++...-  ... ......
T Consensus       421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v--~~~~~~~~~~  495 (681)
T PRK08324        421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAV--QAAFEEAALA  495 (681)
T ss_pred             CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHH--HHHHHHHHHH
Confidence            4677886665 567777777654 34568999999998877766554432  3577888888754210  000 000011


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      .+.+|.|+..+-
T Consensus       496 ~g~iDvvI~~AG  507 (681)
T PRK08324        496 FGGVDIVVSNAG  507 (681)
T ss_pred             cCCCCEEEECCC
Confidence            246899998654

>PRK07109 short chain dehydrogenase; Provisional

Probab=84.32  E-value=22  Score=35.18  Aligned_cols=86  Identities=14%  Similarity=0.063  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .+..||=.| |+|+.+..++..+ ..+.+|+.++.++..++.+.+.++..|. ++.++..|..+...-  ... ......
T Consensus         7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v--~~~~~~~~~~   82 (334)
T PRK07109          7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAV--QAAADRAEEE   82 (334)
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHH--HHHHHHHHHH
Confidence            355666666 4567777777654 3456899999999999888888877764 577788888764210  000 000011


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.++.++-
T Consensus        83 ~g~iD~lInnAg   94 (334)
T PRK07109         83 LGPIDTWVNNAM   94 (334)
T ss_pred             CCCCCEEEECCC
Confidence            247899998664

>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional

Probab=84.30  E-value=0.6  Score=50.72  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=31.1

Q ss_pred             CeEEEechhhhhhhhcccceecccccccCCCCCC
Q psy17793        345 PVQIIVDQPCALAVLRGADVFAPGVLAMPLGKNS  378 (397)
Q Consensus       345 ~~~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~~  378 (397)
                      .+.|+||..++..+.+|++||+|||+++...|..
T Consensus       563 ~~~V~Vd~~a~~~v~~G~~v~apgVv~~d~~ir~  596 (639)
T PRK13534        563 KYRVVVDKESEPFARKGKSVFAKFVIDCDEEIRP  596 (639)
T ss_pred             CcEEEECCcchhhhhCCCcccCCcceecCCCCCC
Confidence            3799999999999999999999999999988754

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=84.16  E-value=29  Score=32.21  Aligned_cols=86  Identities=8%  Similarity=0.067  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      +|.++|=.|+ +|+.+..++..+ ..+.+|+.++.+++.++.+.+.+++.+. ++.++..|..+...-. ..+....  .
T Consensus        10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~--~   85 (256)
T PRK06124         10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDA--E   85 (256)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHH--h
Confidence            4678887775 566777777644 3457899999998888877777776663 4778888886542100 0000001  1


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+++|.|+..+-
T Consensus        86 ~~~id~vi~~ag   97 (256)
T PRK06124         86 HGRLDILVNNVG   97 (256)
T ss_pred             cCCCCEEEECCC
Confidence            246899998663

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=84.10  E-value=2.4  Score=38.64  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=25.0

Q ss_pred             ccccccCCcEEEEEecCCCccccHHHHHHHHHHCC
Q psy17793        222 GIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP  256 (397)
Q Consensus       222 a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~  256 (397)
                      ..+.|+++ .+|..-+|+.+.-.++.+..+|++..
T Consensus       106 i~~~l~~~-~lvV~~STvppGtt~~~~~~ile~~~  139 (185)
T PF03721_consen  106 IAPVLRPG-DLVVIESTVPPGTTEELLKPILEKRS  139 (185)
T ss_dssp             HHHHHCSC-EEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred             HHHHHhhc-ceEEEccEEEEeeehHhhhhhhhhhc
Confidence            55567775 44444567888888989999999865

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=84.10  E-value=27  Score=32.49  Aligned_cols=87  Identities=11%  Similarity=0.096  Sum_probs=54.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .+..+|=.| |+|+.+.+++..+. .+.+|+..+.++..++.+.+.++..+. .+..+..|..+...-  .+. ......
T Consensus         8 ~~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~--~~~~~~~~~~   83 (254)
T PRK08085          8 AGKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTHKQEV--EAAIEHIEKD   83 (254)
T ss_pred             CCCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHH--HHHHHHHHHh
Confidence            356777777 45677777776553 456899999998888877776666552 466777887654210  000 000011


Q ss_pred             ccCccEEEEcCCC
Q psy17793        163 KESFDRILLDAPC  175 (397)
Q Consensus       163 ~~~fD~Il~DpPC  175 (397)
                      .+.+|.|+..+-.
T Consensus        84 ~~~id~vi~~ag~   96 (254)
T PRK08085         84 IGPIDVLINNAGI   96 (254)
T ss_pred             cCCCCEEEECCCc
Confidence            2468999987643

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=83.94  E-value=0.96  Score=45.36  Aligned_cols=39  Identities=26%  Similarity=0.319  Sum_probs=25.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHH
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTK  125 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~  125 (397)
                      ..|||+|+|||.-...+-.....-..++-+|.|+.--+.
T Consensus       115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV  153 (484)
T COG5459         115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKV  153 (484)
T ss_pred             chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHH
Confidence            469999999997665554544444456667777654333

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=83.87  E-value=7.1  Score=38.45  Aligned_cols=51  Identities=18%  Similarity=0.198  Sum_probs=32.7

Q ss_pred             cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      ...++|++||=.|+|+ |..+.++|..+ +...|++++.++++.+.+    +.+|.+
T Consensus       156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~----~~~Ga~  207 (347)
T PRK10309        156 AQGCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALA----KSLGAM  207 (347)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHH----HHcCCc
Confidence            3456889998886533 22344555654 233588999999988765    345764

>PRK09242 tropinone reductase; Provisional

Probab=83.59  E-value=28  Score=32.44  Aligned_cols=86  Identities=10%  Similarity=0.053  Sum_probs=53.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEEcccccccccchhhH-HHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHVYDSTRINTSSQIDI-ERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~~D~~~~~~~~~~d~-~~~~~  161 (397)
                      .|..+|=.|++ |+.+..++..+. .+.+|+.++.+++.++.+.+.+.... -.++.++..|..+...-  ... .....
T Consensus         8 ~~k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~--~~~~~~~~~   84 (257)
T PRK09242          8 DGQTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDR--RAILDWVED   84 (257)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHH--HHHHHHHHH
Confidence            36678877764 566776776543 45689999999988888777776551 13477788888654210  000 00001


Q ss_pred             cccCccEEEEcC
Q psy17793        162 QKESFDRILLDA  173 (397)
Q Consensus       162 ~~~~fD~Il~Dp  173 (397)
                      .-+.+|.|+..+
T Consensus        85 ~~g~id~li~~a   96 (257)
T PRK09242         85 HWDGLHILVNNA   96 (257)
T ss_pred             HcCCCCEEEECC
Confidence            125689998855

>PRK12829 short chain dehydrogenase; Provisional

Probab=83.38  E-value=22  Score=33.09  Aligned_cols=88  Identities=16%  Similarity=0.102  Sum_probs=54.0

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHH
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIER  158 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~  158 (397)
                      +...++.++|=.|+. |+.+.+++..+ ..+..|++++.+++..+.+.+...+.   ++.++..|..+...-. ..+...
T Consensus         6 ~~~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~   81 (264)
T PRK12829          6 LKPLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA---KVTATVADVADPAQVERVFDTAV   81 (264)
T ss_pred             hhccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC---ceEEEEccCCCHHHHHHHHHHHH
Confidence            334567889988875 77788877754 34568999999988777665444322   5677888887542100 000000


Q ss_pred             hhhcccCccEEEEcCC
Q psy17793        159 MKLQKESFDRILLDAP  174 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpP  174 (397)
                      .  ..+.+|.|+..+.
T Consensus        82 ~--~~~~~d~vi~~ag   95 (264)
T PRK12829         82 E--RFGGLDVLVNNAG   95 (264)
T ss_pred             H--HhCCCCEEEECCC
Confidence            0  1146899998654

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=83.21  E-value=9.8  Score=36.57  Aligned_cols=79  Identities=15%  Similarity=0.170  Sum_probs=52.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .+|.. |+..+|+=-.+   +.++..+-++.++|..++-...+++|+.  +-.++++...|........      .+ +.
T Consensus        88 N~~~~-l~~YpGSP~lA---~~llR~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~------LP-P~  154 (279)
T COG2961          88 NPGGG-LRYYPGSPLLA---RQLLREQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAH------LP-PK  154 (279)
T ss_pred             CCCCC-cccCCCCHHHH---HHHcchhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhh------CC-CC
Confidence            34443 45444443333   3344467789999999999999999987  5578999999987553210      11 12


Q ss_pred             cCccEEEEcCCC
Q psy17793        164 ESFDRILLDAPC  175 (397)
Q Consensus       164 ~~fD~Il~DpPC  175 (397)
                      ++=-.||+|||+
T Consensus       155 erRglVLIDPPf  166 (279)
T COG2961         155 ERRGLVLIDPPF  166 (279)
T ss_pred             CcceEEEeCCCc
Confidence            344799999993

>PRK06139 short chain dehydrogenase; Provisional

Probab=83.19  E-value=24  Score=34.99  Aligned_cols=86  Identities=12%  Similarity=0.050  Sum_probs=55.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .+..||=.|+ +|+.+..++..+ ..+.+|+.++.++.+++.+.+.++..|. ++.++..|..+...-  ... ......
T Consensus         6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v--~~~~~~~~~~   81 (330)
T PRK06139          6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDADQV--KALATQAASF   81 (330)
T ss_pred             CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHH--HHHHHHHHHh
Confidence            4566775555 577777777654 3456899999999999988888887764 466777887654210  000 000011


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      .+.+|.++.++-
T Consensus        82 ~g~iD~lVnnAG   93 (330)
T PRK06139         82 GGRIDVWVNNVG   93 (330)
T ss_pred             cCCCCEEEECCC
Confidence            257899998664

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=83.08  E-value=8.4  Score=37.50  Aligned_cols=51  Identities=27%  Similarity=0.322  Sum_probs=35.8

Q ss_pred             cCCCCCCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPGQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ..+++|++||=.|+  +-|..+.++|...  +.+|++++.++++.+.++    .+|++.
T Consensus       134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~----~lGa~~  186 (325)
T TIGR02825       134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLK----KLGFDV  186 (325)
T ss_pred             hCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----HcCCCE
Confidence            45678999987774  3455666677764  357999999988876664    467754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK07326 short chain dehydrogenase; Provisional

Probab=82.74  E-value=25  Score=32.07  Aligned_cols=60  Identities=8%  Similarity=0.002  Sum_probs=43.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI  148 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~  148 (397)
                      +..||=.| |+|+.+.+++..+. .+.+|++++.++.+.+.+.+.+...  ..+.++.+|..+.
T Consensus         6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~   66 (237)
T PRK07326          6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDE   66 (237)
T ss_pred             CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCH
Confidence            56788777 47888888887553 3458999999998877776655443  4577888887654

>PRK06125 short chain dehydrogenase; Provisional

Probab=82.71  E-value=35  Score=31.80  Aligned_cols=82  Identities=15%  Similarity=0.167  Sum_probs=52.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      +..+|=.|+ +|+.+..++..+ ..+.+|++++.++...+.+.+.++...-.++.++..|..+...     .......-+
T Consensus         7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~-----~~~~~~~~g   80 (259)
T PRK06125          7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEA-----REQLAAEAG   80 (259)
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHH-----HHHHHHHhC
Confidence            567777775 566777777644 2345899999999888887777765533457778888865421     000001125


Q ss_pred             CccEEEEcC
Q psy17793        165 SFDRILLDA  173 (397)
Q Consensus       165 ~fD~Il~Dp  173 (397)
                      ..|.++.++
T Consensus        81 ~id~lv~~a   89 (259)
T PRK06125         81 DIDILVNNA   89 (259)
T ss_pred             CCCEEEECC
Confidence            689998754

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=82.68  E-value=7.2  Score=38.99  Aligned_cols=51  Identities=20%  Similarity=0.233  Sum_probs=33.7

Q ss_pred             cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      ..+++|++||=.|+|+ |..+.++|... +..+|+++|.++.+++.++    ++|.+
T Consensus       187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~----~~Ga~  238 (371)
T cd08281         187 AGVRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALAR----ELGAT  238 (371)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHH----HcCCc
Confidence            4567899998887543 23344455543 2236999999999987764    46764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=82.63  E-value=36  Score=32.55  Aligned_cols=86  Identities=15%  Similarity=0.042  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAP-GNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagp-G~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|..+|=.|+++ +|.+..+|..+. .+.+|+..+.+....+.+++..+.++..  .++..|..+...-. ..+.  ...
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~~~~~--i~~   79 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD--YVYELDVSKPEHFKSLAES--LKK   79 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc--eEEEecCCCHHHHHHHHHH--HHH
Confidence            367888888874 677877776543 4568888888854334444444444533  45677887652100 0000  001


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+.+|.++.++-
T Consensus        80 ~~g~iDilVnnAG   92 (274)
T PRK08415         80 DLGKIDFIVHSVA   92 (274)
T ss_pred             HcCCCCEEEECCc
Confidence            1257899998764

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.50  E-value=33  Score=31.45  Aligned_cols=85  Identities=14%  Similarity=0.162  Sum_probs=54.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~  163 (397)
                      +..+|=.|+ +|+.+.+++..+ ..+.+|+.++.++...+.+...++..+ .++.++..|..+...-  .+. ....-..
T Consensus         7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~--~~~~~~~~~~~   82 (239)
T PRK07666          7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSDYEEV--TAAIEQLKNEL   82 (239)
T ss_pred             CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCCHHHH--HHHHHHHHHHc
Confidence            457777774 688888887654 445689999999888777766665554 3577888888764210  000 0000011


Q ss_pred             cCccEEEEcCC
Q psy17793        164 ESFDRILLDAP  174 (397)
Q Consensus       164 ~~fD~Il~DpP  174 (397)
                      +..|.|+..+.
T Consensus        83 ~~id~vi~~ag   93 (239)
T PRK07666         83 GSIDILINNAG   93 (239)
T ss_pred             CCccEEEEcCc
Confidence            46899998664

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=82.21  E-value=9.7  Score=36.43  Aligned_cols=51  Identities=20%  Similarity=0.133  Sum_probs=32.4

Q ss_pred             cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      +...+|++||=.|+|+ |..++++|..+ +...|+++|.++++++.++    ++|.+
T Consensus       116 ~~~~~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~----~~Ga~  167 (280)
T TIGR03366       116 AGDLKGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELAL----SFGAT  167 (280)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HcCCc
Confidence            3456899999886532 22334445543 2335899999999887664    46764

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=82.16  E-value=3.6  Score=35.50  Aligned_cols=43  Identities=16%  Similarity=0.167  Sum_probs=29.0

Q ss_pred             EEcCCCC--hHHHHHH-HHcCCCcEEEEEeCCHHHHHHHHHH--HHHh
Q psy17793         91 DMCAAPG--NKLTHIA-LLMNDTGTLIALDKSKPRVTKLEET--IKKL  133 (397)
Q Consensus        91 DlcagpG--~kt~~lA-~~~~~~~~V~avD~s~~rl~~l~~n--~~~~  133 (397)
                      |+||.-|  ..+...+ +.....++|+++|.++..++.++++  +...
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence            8999999  6666554 2455678999999999999999999  5544

; PDB: 2PY6_A.

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=82.16  E-value=40  Score=31.77  Aligned_cols=86  Identities=19%  Similarity=0.103  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCCCC-hHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793         85 PGQKVLDMCAAPG-NKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG-~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~  161 (397)
                      .|..+|=.|++.| |.+..+|..+. .+.+|+..+.+....+.+++..+..|.  ..++..|+.+...-  ... .....
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~--~~~~~~Dv~~~~~v--~~~~~~~~~   82 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGC--NFVSELDVTNPKSI--SNLFDDIKE   82 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCC--ceEEEccCCCHHHH--HHHHHHHHH
Confidence            3567888888765 66666765543 355788778764333334443333342  23456787664210  000 00001


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+.+|+++.++-
T Consensus        83 ~~g~iDilVnnag   95 (260)
T PRK06603         83 KWGSFDFLLHGMA   95 (260)
T ss_pred             HcCCccEEEEccc
Confidence            1257999887654

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.14  E-value=25  Score=32.14  Aligned_cols=85  Identities=13%  Similarity=0.221  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .+++||=.|++ |+.+.+++..+ ..+.+|++++.++..++.+.+.+...+  ++.++..|..+...-  ... ......
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~--~~~~~~~~~~   78 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESA--RNVIEKAAKV   78 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHH--HHHHHHHHHH
Confidence            36688888875 77788788655 345689999999988877655554432  577788888754210  000 000001


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.|+..+.
T Consensus        79 ~~~id~ii~~ag   90 (238)
T PRK05786         79 LNAIDGLVVTVG   90 (238)
T ss_pred             hCCCCEEEEcCC
Confidence            145798887553

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=82.11  E-value=33  Score=31.50  Aligned_cols=86  Identities=10%  Similarity=0.072  Sum_probs=54.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~  163 (397)
                      +..+|=.|+ +|+.+.+++..+. .+.+|+.++.+....+.+...++..+ .++.++..|..+...-  .+. .......
T Consensus         3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~--~~~~~~~~~~~   78 (250)
T TIGR03206         3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG-GNAQAFACDITDRDSV--DTAVAAAEQAL   78 (250)
T ss_pred             CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHH--HHHHHHHHHHc
Confidence            567777775 5777877776543 44589999999988888777776654 3577888888754210  000 0000011


Q ss_pred             cCccEEEEcCCC
Q psy17793        164 ESFDRILLDAPC  175 (397)
Q Consensus       164 ~~fD~Il~DpPC  175 (397)
                      +..|.|+..+..
T Consensus        79 ~~~d~vi~~ag~   90 (250)
T TIGR03206        79 GPVDVLVNNAGW   90 (250)
T ss_pred             CCCCEEEECCCC
Confidence            468999986643

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=82.06  E-value=15  Score=36.11  Aligned_cols=51  Identities=14%  Similarity=0.106  Sum_probs=34.9

Q ss_pred             cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ..+++|++||=.|+|+ |..+.++|..+  +.+|++++.++++++.+    +++|.+.
T Consensus       161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a----~~~Ga~~  212 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLA----LALGAAS  212 (329)
T ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHH----HHhCCce
Confidence            4568899999888643 22344555554  35799999999987554    5578754

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=82.03  E-value=11  Score=38.99  Aligned_cols=34  Identities=18%  Similarity=0.277  Sum_probs=28.3

Q ss_pred             CCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q psy17793         94 AAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE  127 (397)
Q Consensus        94 agpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~  127 (397)
                      -|.|..+.-+|..+..+-.|+++|+++.+++.++
T Consensus        12 IGlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~   45 (425)
T PRK15182         12 IGLGYVGLPLAVEFGKSRQVVGFDVNKKRILELK   45 (425)
T ss_pred             ECcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence            3778888888877766678999999999999877

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.97  E-value=42  Score=31.94  Aligned_cols=86  Identities=14%  Similarity=0.056  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCC-CChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793         85 PGQKVLDMCAA-PGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcag-pG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~  161 (397)
                      .|..+|=.|++ +++.+..+|..+. .+.+|+.++.+....+.+++..++++  .+..+..|..+...-  ... .....
T Consensus         9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v--~~~~~~~~~   84 (272)
T PRK08159          9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG--AFVAGHCDVTDEASI--DAVFETLEK   84 (272)
T ss_pred             cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC--CceEEecCCCCHHHH--HHHHHHHHH
Confidence            35678888887 4788888887653 45577777665433344444444444  244577887654210  000 00011


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+..|.++.++-
T Consensus        85 ~~g~iD~lv~nAG   97 (272)
T PRK08159         85 KWGKLDFVVHAIG   97 (272)
T ss_pred             hcCCCcEEEECCc
Confidence            1257899998774

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=81.94  E-value=32  Score=31.87  Aligned_cols=86  Identities=15%  Similarity=0.120  Sum_probs=54.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~  163 (397)
                      +..+| +..|+|+.+.+++..+ ..+..|+.++.++...+.+.+.++..+. ++.++..|..+...-  .+. .......
T Consensus         7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~--~~~~~~~~~~~   82 (262)
T PRK13394          7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTNEDAV--NAGIDKVAERF   82 (262)
T ss_pred             CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCCHHHH--HHHHHHHHHHc
Confidence            56777 4455677888777654 3456899999999888888777776653 477788888764210  000 0000112


Q ss_pred             cCccEEEEcCCC
Q psy17793        164 ESFDRILLDAPC  175 (397)
Q Consensus       164 ~~fD~Il~DpPC  175 (397)
                      +..|.|+..+-+
T Consensus        83 ~~~d~vi~~ag~   94 (262)
T PRK13394         83 GSVDILVSNAGI   94 (262)
T ss_pred             CCCCEEEECCcc
Confidence            468999986644

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.93  E-value=23  Score=33.25  Aligned_cols=84  Identities=14%  Similarity=0.067  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAP-GNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagp-G~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|+.+|=.|++. ++.+..+|..+ ..+.+|+.++.+....+    .+++..-.++.++..|.++...-. ..+.-..  
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~----~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--   79 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKK----SLQKLVDEEDLLVECDVASDESIERAFATIKE--   79 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHH----HHHhhccCceeEEeCCCCCHHHHHHHHHHHHH--
Confidence            467899889885 67787777755 35568888887743222    223322235677888887542100 0000001  


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+++|.++.++-
T Consensus        80 ~~g~iD~lv~nAg   92 (252)
T PRK06079         80 RVGKIDGIVHAIA   92 (252)
T ss_pred             HhCCCCEEEEccc
Confidence            1257999998763

>PRK12937 short chain dehydrogenase; Provisional

Probab=81.92  E-value=35  Score=31.22  Aligned_cols=85  Identities=12%  Similarity=0.006  Sum_probs=48.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDK-SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~-s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      +..||=.|+ +|+.+.++|..+. .+.+|+.+.. ++...+.+.+.++..+ .++.++..|..+...-  .+. ......
T Consensus         5 ~~~vlItG~-~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~--~~~~~~~~~~   80 (245)
T PRK12937          5 NKVAIVTGA-SRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAG-GRAIAVQADVADAAAV--TRLFDAAETA   80 (245)
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHH--HHHHHHHHHH
Confidence            456666665 5788888887653 3446666554 3455555666666555 3578888888764210  000 000001


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      .+..|.|+..+.
T Consensus        81 ~~~id~vi~~ag   92 (245)
T PRK12937         81 FGRIDVLVNNAG   92 (245)
T ss_pred             cCCCCEEEECCC
Confidence            246899998653

>PRK06181 short chain dehydrogenase; Provisional

Probab=81.81  E-value=41  Score=31.36  Aligned_cols=60  Identities=12%  Similarity=0.114  Sum_probs=42.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793         87 QKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI  148 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~  148 (397)
                      ..||=.| |+|+.+.+++..+ ..+.+|++++.++...+.+.+.++..+ .++.++..|..+.
T Consensus         2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~   62 (263)
T PRK06181          2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG-GEALVVPTDVSDA   62 (263)
T ss_pred             CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence            3566444 6677888777643 345689999999888777766666655 3577888888764

>PRK07062 short chain dehydrogenase; Provisional

Probab=81.63  E-value=39  Score=31.59  Aligned_cols=87  Identities=8%  Similarity=0.059  Sum_probs=53.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEEcccccccccchhhH-HHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHVYDSTRINTSSQIDI-ERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~~D~~~~~~~~~~d~-~~~~~  161 (397)
                      .|..+|=.|++ |+.+.+++..+ ..+.+|+.++.++.+++.+.+.+.... -.++.++..|..+...-  ... .....
T Consensus         7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v--~~~~~~~~~   83 (265)
T PRK07062          7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADV--AAFAAAVEA   83 (265)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHH--HHHHHHHHH
Confidence            36678877755 56666677654 346689999999988887776665542 23577788888765210  000 00001


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+.+|.++.++-
T Consensus        84 ~~g~id~li~~Ag   96 (265)
T PRK07062         84 RFGGVDMLVNNAG   96 (265)
T ss_pred             hcCCCCEEEECCC
Confidence            1256899998664

>KOG3350|consensus

Probab=81.58  E-value=11  Score=34.40  Aligned_cols=92  Identities=15%  Similarity=0.126  Sum_probs=53.4

Q ss_pred             cCCCcEEEechhHHHHHhccCC-CCCCeEEEEcCCCChHHHHHHHHcC----CCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         62 LDSSMGILQNLPSILAGHYLDV-QPGQKVLDMCAAPGNKLTHIALLMN----DTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~-~~g~~VLDlcagpG~kt~~lA~~~~----~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      ..+..+|.++-+..++...+.. ..|.+| -+=++|-..   +-....    +.-+|+-+|.++        +.+.+|  
T Consensus        49 Qlsqfwy~~eta~~La~e~v~~s~e~~rI-acvS~Psly---~y~k~re~~~~~~~v~lfEfDk--------RFe~yg--  114 (217)
T KOG3350|consen   49 QLSQFWYSDETARKLAAERVEASGEGSRI-ACVSCPSLY---VYQKKREIEIPHDQVYLFEFDK--------RFELYG--  114 (217)
T ss_pred             hhhhhhcCHHHHHHHHHHHHhhcccCceE-EEEeCchHH---hhhhhhhccCCceeEEEEEehh--------hHHhcc--
Confidence            4566778899888888887764 345444 444445432   111111    245677777764        345556  


Q ss_pred             cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCC
Q psy17793        137 SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       137 ~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                       -+++..|.......       +....+.||+|+.|||.
T Consensus       115 -~eFvfYDyN~p~dl-------p~~lk~~fdiivaDPPf  145 (217)
T KOG3350|consen  115 -TEFVFYDYNCPLDL-------PDELKAHFDIIVADPPF  145 (217)
T ss_pred             -ceeEEeccCCCCCC-------HHHHHhcccEEEeCCcc
Confidence             25566666443211       11234569999999994

>PRK08862 short chain dehydrogenase; Provisional

Probab=81.26  E-value=41  Score=31.20  Aligned_cols=86  Identities=13%  Similarity=0.054  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .|..+|=.|++.| .+..+|..+ ..+..|+.++.++..++.+.+.++..+. .+..+..|..+...-. ..+.-...+ 
T Consensus         4 ~~k~~lVtGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~-   80 (227)
T PRK08862          4 KSSIILITSAGSV-LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTD-NVYSFQLKDFSQESIRHLFDAIEQQF-   80 (227)
T ss_pred             CCeEEEEECCccH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC-CeEEEEccCCCHHHHHHHHHHHHHHh-
Confidence            3567777776664 555555543 3567899999999999888777777664 3556667765432000 000000111 


Q ss_pred             ccCccEEEEcC
Q psy17793        163 KESFDRILLDA  173 (397)
Q Consensus       163 ~~~fD~Il~Dp  173 (397)
                      ...+|.++.++
T Consensus        81 g~~iD~li~na   91 (227)
T PRK08862         81 NRAPDVLVNNW   91 (227)
T ss_pred             CCCCCEEEECC
Confidence            12799999876

>PRK08643 acetoin reductase; Validated

Probab=80.97  E-value=45  Score=30.91  Aligned_cols=84  Identities=11%  Similarity=-0.005  Sum_probs=52.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~  163 (397)
                      +..+|=.| |+|+.+.+++..+. .+.+|+.++.++...+.+...+...+ .++.++..|..+...-  ... .......
T Consensus         2 ~k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~--~~~~~~~~~~~   77 (256)
T PRK08643          2 SKVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSDRDQV--FAAVRQVVDTF   77 (256)
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHH--HHHHHHHHHHc
Confidence            34555444 66778888887553 45689999999988888877776655 3577788888764210  000 0000112


Q ss_pred             cCccEEEEcC
Q psy17793        164 ESFDRILLDA  173 (397)
Q Consensus       164 ~~fD~Il~Dp  173 (397)
                      +..|.++.++
T Consensus        78 ~~id~vi~~a   87 (256)
T PRK08643         78 GDLNVVVNNA   87 (256)
T ss_pred             CCCCEEEECC
Confidence            4689999855

>KOG2651|consensus

Probab=80.87  E-value=4.9  Score=40.88  Aligned_cols=52  Identities=21%  Similarity=0.211  Sum_probs=37.7

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE  127 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~  127 (397)
                      |-++..+.+-.+-+.|+|+|||.|..+..++-  +.+-.|.|+|-|....+.++
T Consensus       142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl--~y~lsV~aIegsq~~~~ra~  193 (476)
T KOG2651|consen  142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSL--GYGLSVKAIEGSQRLVERAQ  193 (476)
T ss_pred             HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhh--ccCceEEEeccchHHHHHHH
Confidence            33444454555667899999999999987766  46788999999965544443

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=80.78  E-value=42  Score=30.50  Aligned_cols=85  Identities=16%  Similarity=0.162  Sum_probs=52.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~  163 (397)
                      +.+||=.|+ +|+.+.+++..+ ..+.+|++++.++...+.+...++..+. ++.++..|..+...-  .+. ....-.-
T Consensus         5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~--~~~~~~~~~~~   80 (246)
T PRK05653          5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGG-EARVLVFDVSDEAAV--RALIEAAVEAF   80 (246)
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCC-ceEEEEccCCCHHHH--HHHHHHHHHHh
Confidence            457886665 788888888754 3345799999999888777666665553 467777888654210  000 0000011


Q ss_pred             cCccEEEEcCC
Q psy17793        164 ESFDRILLDAP  174 (397)
Q Consensus       164 ~~fD~Il~DpP  174 (397)
                      +.+|.|+..+-
T Consensus        81 ~~id~vi~~ag   91 (246)
T PRK05653         81 GALDILVNNAG   91 (246)
T ss_pred             CCCCEEEECCC
Confidence            46799997543

>PRK08589 short chain dehydrogenase; Validated

Probab=80.76  E-value=38  Score=32.07  Aligned_cols=85  Identities=15%  Similarity=0.085  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh-HHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID-IERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d-~~~~~~~  162 (397)
                      .+.++|=.|++ |+.+..++..+ ..+.+|+.++.+ ..++.+.+.++..+. ++.++..|..+...-  .. .......
T Consensus         5 ~~k~vlItGas-~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~--~~~~~~~~~~   79 (272)
T PRK08589          5 ENKVAVITGAS-TGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGG-KAKAYHVDISDEQQV--KDFASEIKEQ   79 (272)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCC-eEEEEEeecCCHHHH--HHHHHHHHHH
Confidence            35667766654 56677777644 356789999998 666666666665542 477788888654210  00 0000011


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+..|.++.++-
T Consensus        80 ~g~id~li~~Ag   91 (272)
T PRK08589         80 FGRVDVLFNNAG   91 (272)
T ss_pred             cCCcCEEEECCC
Confidence            246899999774

>PRK06949 short chain dehydrogenase; Provisional

Probab=80.46  E-value=35  Score=31.61  Aligned_cols=87  Identities=11%  Similarity=0.140  Sum_probs=55.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .+.+||=.| |+|+.+.+++..+. .+.+|++++.++++++.+...+...+. ++.++..|..+...- ..-........
T Consensus         8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~-~~~~~~~~~~~   84 (258)
T PRK06949          8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSI-KAAVAHAETEA   84 (258)
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHH-HHHHHHHHHhc
Confidence            367788777 66778888887654 345799999999998888777665543 477888888654210 00000001112


Q ss_pred             cCccEEEEcCC
Q psy17793        164 ESFDRILLDAP  174 (397)
Q Consensus       164 ~~fD~Il~DpP  174 (397)
                      +.+|.|+..+.
T Consensus        85 ~~~d~li~~ag   95 (258)
T PRK06949         85 GTIDILVNNSG   95 (258)
T ss_pred             CCCCEEEECCC
Confidence            46899998654

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=80.36  E-value=23  Score=35.41  Aligned_cols=52  Identities=19%  Similarity=0.233  Sum_probs=35.0

Q ss_pred             cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ..+++|++||=.|+|+ |..++++|..+ +..+|+++|.++++++.++    ++|.+.
T Consensus       181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~-G~~~Vi~~~~~~~~~~~a~----~~Ga~~  233 (368)
T TIGR02818       181 AKVEEGDTVAVFGLGGIGLSVIQGARMA-KASRIIAIDINPAKFELAK----KLGATD  233 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HhCCCe
Confidence            3567899999887643 33345556554 2237999999999987774    467643

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=80.32  E-value=36  Score=31.40  Aligned_cols=86  Identities=16%  Similarity=0.121  Sum_probs=54.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      +.+||=.| |+|+.+.+++..+. .+.+|++++.++...+.+...++..+ .++.++.+|..+...-.. -........+
T Consensus         4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~-~~~~~~~~~~   80 (258)
T PRK12429          4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTDEEAINA-GIDYAVETFG   80 (258)
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHH-HHHHHHHHcC
Confidence            45666444 57888998888553 45589999999998888777776655 357788888875421000 0000001124


Q ss_pred             CccEEEEcCC
Q psy17793        165 SFDRILLDAP  174 (397)
Q Consensus       165 ~fD~Il~DpP  174 (397)
                      .+|.|+..+.
T Consensus        81 ~~d~vi~~a~   90 (258)
T PRK12429         81 GVDILVNNAG   90 (258)
T ss_pred             CCCEEEECCC
Confidence            6899998553

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=80.15  E-value=8.3  Score=37.56  Aligned_cols=43  Identities=9%  Similarity=-0.022  Sum_probs=27.6

Q ss_pred             CCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q psy17793         84 QPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLE  127 (397)
Q Consensus        84 ~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~  127 (397)
                      .++++||=+|+|+ |..++++|..+ +...|+++|.++.+++.+.
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a~  186 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGAT  186 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhhh
Confidence            3577888776543 34445566654 3345778899988876654

>PRK08251 short chain dehydrogenase; Provisional

Probab=80.04  E-value=49  Score=30.43  Aligned_cols=86  Identities=14%  Similarity=0.159  Sum_probs=53.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      +.++|=.| |+|+.+.+++..+. .+.+|+..+.++.+++.+...+.... -.++.++..|..+...-  .+. ......
T Consensus         2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--~~~~~~~~~~   78 (248)
T PRK08251          2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQV--FEVFAEFRDE   78 (248)
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHH--HHHHHHHHHH
Confidence            34677666 56788888887553 34589999999999888776665432 23578888888764210  000 000011


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+..|.|+.++-
T Consensus        79 ~~~id~vi~~ag   90 (248)
T PRK08251         79 LGGLDRVIVNAG   90 (248)
T ss_pred             cCCCCEEEECCC
Confidence            246899998664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	397
3a4t_A	274	Crystal Structure Of Atrm4 From M.Jannaschii With S		4e-25
2yxl_A	450	Crystal Structure Of Ph0851 Length = 450		2e-23
3m6u_A	464	Multi-Site-Specific 16s Rrna Methyltransferase Rsmf		2e-19
3m6w_A	464	Multi-Site-Specific 16s Rrna Methyltransferase Rsmf		2e-19
1ixk_A	315	Crystal Structure Analysis Of Methyltransferase Hom		1e-18
3m6x_A	464	Multi-Site-Specific 16s Rrna Methyltransferase Rsmf		1e-18
2frx_A	479	Crystal Structure Of Yebu, A M5c Rna Methyltransfer		2e-18
1sqf_A	429	The Crystal Structure Of E. Coli Fmu Binary Complex		3e-17
3m4x_A	456	Structure Of A Ribosomal Methyltransferase Length =		3e-15
2b9e_A	309	Human Nsun5 Protein Length = 309		1e-14
4fp9_A	360	Human Mterf4-Nsun4 Protein Complex Length = 360		1e-11
4fzv_A	359	Crystal Structure Of The Human Mterf4:nsun4:sam Ter		1e-11
2as0_A	396	Crystal Structure Of Ph1915 (Apc 5817): A Hypotheti		3e-06
2cww_A	382	Crystal Structure Of Thermus Thermophilus Ttha1280,		3e-05
1wxw_A	382	Crystal Structure Of Tt1595, A Putative Sam-Depende		1e-04

>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With Sinefungin Length = 274

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 128/242 (52%), Gaps = 36/242 (14%)
Query: 70  QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
           Q++ S++    L+ +    +LDMCAAPG K TH+A LM + GT++A++ SK R   L+  
Sbjct: 68  QSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSN 127
Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANS 189
           I ++        V ++  IN   +   + +   +  FD+ILLDAPCSG     +  + N 
Sbjct: 128 INRM-------GVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSG----NIIKDKNR 176
Query: 190 FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIA 249
             N+ ++   Y ++++K L  +          GI LLKKDG LVY TCS+ VEENE VI 
Sbjct: 177 --NVSEEDIKYCSLRQKELIDI----------GIDLLKKDGELVYSTCSMEVEENEEVIK 224
Query: 250 WILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKL 309
           +IL +  +VEL+  +     KG+  K  E   +  ++ F PP  P         FFI KL
Sbjct: 225 YILQKRNDVELI-IIKANEFKGINIK--EGYIKGTLRVF-PPNEP---------FFIAKL 271
Query: 310 RK 311
           RK
Sbjct: 272 RK 273

>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851 Length = 450

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 108/201 (53%), Gaps = 21/201 (10%)
Query: 61  ALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK 120
           A +    I+Q   S +A   LD +PG+ V+D+ AAPG K TH+A LM + G + A D  K
Sbjct: 235 AFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDK 294
Query: 121 PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ 180
            R+ +L++ +K++ +  ++  V D+ +   + +I      + +E  D++LLDAPC+  G 
Sbjct: 295 MRMKRLKDFVKRMGIKIVKPLVKDARK---APEI------IGEEVADKVLLDAPCTSSGT 345
Query: 181 RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS 240
                     L  D KI   + +Q++LL++  R           L+K  G L+Y TCS+ 
Sbjct: 346 IGKNPELRWRLRED-KINEMSQLQRELLESAAR-----------LVKPGGRLLYTTCSIF 393
Query: 241 VEENEAVIAWILHRHPEVELV 261
            EENE  I W L+ HPE +LV
Sbjct: 394 KEENEKNIRWFLNVHPEFKLV 414

>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group 43 Length = 464

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 80/185 (43%), Gaps = 27/185 (14%)
Query: 78  GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137
           G  LD +PG++VLD+ AAPG K TH+A  M   G L+A +    RV  L E +++     
Sbjct: 94  GVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPL 153
Query: 138 IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLN--LDK 195
             T                         F R+LLDAPCSG G   MF             
Sbjct: 154 AVTQAPPRALAEAFGTY-----------FHRVLLDAPCSGEG---MFRKDREAARHWGPS 199
Query: 196 KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRH 255
             K  A +QK LL    R           LL   G+LVY TC+ + EENE V+A  L  H
Sbjct: 200 APKRMAEVQKALLAQASR-----------LLGPGGVLVYSTCTFAPEENEGVVAHFLKAH 248
Query: 256 PEVEL 260
           PE  L
Sbjct: 249 PEFRL 253

>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 In Complex With S-Adenosyl-L- Methionine Length = 464

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 80/185 (43%), Gaps = 27/185 (14%)
Query: 78  GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137
           G  LD +PG++VLD+ AAPG K TH+A  M   G L+A +    RV  L E +++     
Sbjct: 94  GVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPL 153
Query: 138 IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLN--LDK 195
             T                         F R+LLDAPCSG G   MF             
Sbjct: 154 AVTQAPPRALAEAFGTY-----------FHRVLLDAPCSGEG---MFRKDREAARHWGPS 199
Query: 196 KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRH 255
             K  A +QK LL    R           LL   G+LVY TC+ + EENE V+A  L  H
Sbjct: 200 APKRMAEVQKALLAQASR-----------LLGPGGVLVYSTCTFAPEENEGVVAHFLKAH 248
Query: 256 PEVEL 260
           PE  L
Sbjct: 249 PEFRL 253

>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog Protein From Pyrococcus Horikoshii Length = 315

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 114/241 (47%), Gaps = 50/241 (20%)
Query: 81  LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQ 139
           LD +PG+ V D  AAPG K +++A L  + G + A D  + R+ +    + +L  L+ I 
Sbjct: 114 LDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVIYAFDVDENRLRETRLNLSRLGVLNVIL 173
Query: 140 THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLN-LDKKIK 198
            H         SS + I  + ++   FD+ILLDAPC+G G   +  N     N     IK
Sbjct: 174 FH---------SSSLHIGELNVE---FDKILLDAPCTGSGT--IHKNPERKWNRTXDDIK 219
Query: 199 SYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEV 258
               +Q +LL+           +G+ +LK  GILVY TCSL  EENE VI W L    +V
Sbjct: 220 FCQGLQXRLLE-----------KGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNF-DV 267
Query: 259 ELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNT--------DTIGFFICKLR 310
           EL   LP           L+  + A+   FG  L    +N         +T GFFI K+R
Sbjct: 268 EL---LP-----------LKYGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFIAKIR 313
Query: 311 K 311
           K
Sbjct: 314 K 314

>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 Length = 464

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 78/183 (42%), Gaps = 23/183 (12%)
Query: 78  GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS 137
           G  LD +PG++VLD+ AAPG K TH+A      G L+A +    RV  L E +++     
Sbjct: 94  GVLLDPKPGERVLDLAAAPGGKTTHLAARXGGKGLLLANEVDGKRVRGLLENVERWGAPL 153
Query: 138 IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKI 197
             T                         F R+LLDAPCSG G       A          
Sbjct: 154 AVTQAPPRALAEAFGTY-----------FHRVLLDAPCSGEGXFRKDREAARHWG-PSAP 201
Query: 198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE 257
           K  A +QK LL    R           LL   G+LVY TC+ + EENE V+A  L  HPE
Sbjct: 202 KRXAEVQKALLAQASR-----------LLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPE 250
Query: 258 VEL 260
             L
Sbjct: 251 FRL 253

>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase From E.Coli Length = 479

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 111/237 (46%), Gaps = 35/237 (14%)
Query: 76  LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL 135
           +A  + D    Q+V D+ AAPG+K T I+   N+ G ++A + S  RV  L   I +  +
Sbjct: 108 VAALFADGNAPQRVXDVAAAPGSKTTQISARXNNEGAILANEFSASRVKVLHANISRCGI 167
Query: 136 SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLD- 194
           S++    +D      +            E FD ILLDAPCSG G   +  + ++  N   
Sbjct: 168 SNVALTHFDGRVFGAAV----------PEXFDAILLDAPCSGEGV--VRKDPDALKNWSP 215
Query: 195 KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHR 254
           +  +  A  Q++L+ + +             L+  G LVY TC+L+ EENEAV  W+   
Sbjct: 216 ESNQEIAATQRELIDSAFH-----------ALRPGGTLVYSTCTLNQEENEAVCLWLKET 264
Query: 255 HPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK 311
           +P+   V+ LP   +   A+K L  E    +  F  P I      D  GFF+ +LRK
Sbjct: 265 YPDA--VEFLPLGDLFPGANKALTEE--GFLHVF--PQI-----YDCEGFFVARLRK 310

>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With S- Adenosylmethionine At 2.1 A Resolution Length = 429

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 80  YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
           +L  Q G+ +LD+CAAPG K THI L +     ++A+D  + R++++ + +K+L + +  
Sbjct: 241 WLAPQNGEHILDLCAAPGGKTTHI-LEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA-- 297
Query: 140 THVYDSTRINTSSQIDIERMKLQ---KESFDRILLDAPCSGFG---QRPMFYNANSFLNL 193
                     T  Q D  R   Q   ++ FDRILLDAPCS  G   + P       +L  
Sbjct: 298 ----------TVKQGD-GRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDI----KWLRR 342
Query: 194 DKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILH 253
           D+ I   A +Q ++L A++           P LK  G LVY TCS+  EEN   I   L 
Sbjct: 343 DRDIPELAQLQSEILDAIW-----------PHLKTGGTLVYATCSVLPEENSLQIKAFLQ 391
Query: 254 RHPEVELVQT 263
           R  + EL +T
Sbjct: 392 RTADAELCET 401

>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase Length = 456

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 30/201 (14%)
Query: 70  QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
           Q   + + G     +PG+KVLD+CAAPG K T +A      G L+  +    R   L E 
Sbjct: 90  QEPSAXIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQXKGKGLLVTNEIFPKRAKILSEN 149
Query: 130 IKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
           I++  +S +I T+   +  +   S             FDRI++DAPCSG G      + N
Sbjct: 150 IERWGVSNAIVTNHAPAELVPHFSGF-----------FDRIVVDAPCSGEGX--FRKDPN 196
Query: 189 SFLNLDKKIKSYANI-QKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
           +     ++   Y    Q+++L +            I  LK  G L+Y TC+ + EENE +
Sbjct: 197 AIKEWTEESPLYCQKRQQEILSSA-----------IKXLKNKGQLIYSTCTFAPEENEEI 245
Query: 248 IAWILHRHP----EVELVQTL 264
           I+W++  +P    E+ L Q++
Sbjct: 246 ISWLVENYPVTIEEIPLTQSV 266

>pdb|2B9E|A Chain A, Human Nsun5 Protein Length = 309

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 88/208 (42%), Gaps = 22/208 (10%)
Query: 68  ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
           ILQ+  S L    LD  PG  V+D CAAPGNK +H+A L+ + G + A D    R+  + 
Sbjct: 85  ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 144
Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRP-MFYN 186
             + +  +S  +    D   ++ S          +      ILLD  CSG G        
Sbjct: 145 TLLARAGVSCCELAEEDFLAVSPSDP--------RYHEVHYILLDPSCSGSGMPSRQLEE 196
Query: 187 ANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEA 246
             +      ++ + A  Q++ L     F SL              LVY TCSL  EENE 
Sbjct: 197 PGAGTPSPVRLHALAGFQQRALCHALTFPSL------------QRLVYSTCSLCQEENED 244
Query: 247 VIAWILHRHP-EVELVQTLPQLGMKGLA 273
           V+   L ++P    L   LP    +GL+
Sbjct: 245 VVRDALQQNPGAFRLAPALPAWPHRGLS 272

>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex Length = 360

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 117/256 (45%), Gaps = 39/256 (15%)
Query: 2   RDIQSQCYCLW-LDRAGFVSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNV 60
           +D  ++    W L   G  S    PA    S ++ C+  D   RG        +S+ P  
Sbjct: 72  KDFVNEAISHWELQSEGGQSAAPSPASWACSPNLRCFTFD---RGD-------ISRFPP- 120
Query: 61  ALDSSMGILQ----NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG---TL 113
           A   S+G+++    +  S+L    L +QPG  VLD+CAAPG K   +ALL   TG    L
Sbjct: 121 ARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKT--LALL--QTGCCRNL 176
Query: 114 IALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDA 173
            A D S  R+ +L++ +     S +   + D  ++  +S    +  +L+ +++DR+L+D 
Sbjct: 177 AANDLSPSRIARLQKILH----SYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDV 232
Query: 174 PCSGFGQRPMFYNANSFLNLDKKIKSYANI-QKKLLQAVYRFVSLFDWQGIPLLKKDGIL 232
           PC+           N F    KK +    + Q +LL A           G+   K  G +
Sbjct: 233 PCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAA-----------GLLATKPGGHV 281
Query: 233 VYCTCSLSVEENEAVI 248
           VY TCSLS  +NE V+
Sbjct: 282 VYSTCSLSHLQNEYVV 297

>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary Complex Length = 359

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 116/256 (45%), Gaps = 39/256 (15%)
Query: 2   RDIQSQCYCLW-LDRAGFVSVLRLPARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNV 60
           +D  ++    W L   G  S    PA    S ++ C+  D   RG        +S+ P  
Sbjct: 71  KDFVNEAISHWELQSEGGQSAAPSPASWACSPNLRCFTFD---RGD-------ISRFPP- 119
Query: 61  ALDSSMGI----LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTG---TL 113
           A   S+G+    L +  S+L    L +QPG  VLD+CAAPG K   +ALL   TG    L
Sbjct: 120 ARPGSLGVXEYYLXDAASLLPVLALGLQPGDIVLDLCAAPGGKT--LALLQ--TGCCRNL 175
Query: 114 IALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDA 173
            A D S  R+ +L++ +     S +   + D  ++  +S    +  +L+ +++DR+L+D 
Sbjct: 176 AANDLSPSRIARLQKILH----SYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDV 231
Query: 174 PCSGFGQRPMFYNANSFLNLDKKIKSYANI-QKKLLQAVYRFVSLFDWQGIPLLKKDGIL 232
           PC+           N F    KK +    + Q +LL A           G+   K  G +
Sbjct: 232 PCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAA-----------GLLATKPGGHV 280
Query: 233 VYCTCSLSVEENEAVI 248
           VY TCSLS  +NE V+
Sbjct: 281 VYSTCSLSHLQNEYVV 296

>pdb|2AS0|A Chain A, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna Methyltransferase Length = 396

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 37/162 (22%)
Query: 83  VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV 142
           VQPG +VLD+    G    H A+   D   +I +DKS PR  +  +   KL        V
Sbjct: 215 VQPGDRVLDVFTYTGGFAIHAAIAGADE--VIGIDKS-PRAIETAKENAKL------NGV 265
Query: 143 YDSTRINTSSQIDIERMKLQK--ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY 200
            D  +    S  + E  KLQK  E FD ++LD P   F Q           +L   +++Y
Sbjct: 266 EDRXKFIVGSAFE-EXEKLQKKGEKFDIVVLDPPA--FVQHEK--------DLKAGLRAY 314
Query: 201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE 242
            N+               ++ G+ L+K  GILV C+CS  V+
Sbjct: 315 FNV---------------NFAGLNLVKDGGILVTCSCSQHVD 341

>pdb|2CWW|A Chain A, Crystal Structure Of Thermus Thermophilus Ttha1280, A Putative Sam- Dependent Rna Methyltransferase, In Complex With S-Adenosyl-L- Homocysteine Length = 382

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 37/165 (22%)
Query: 80  YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
           Y++   G++ LD+ +  G    H+AL   +   ++A+D S   + + EE  +   L ++ 
Sbjct: 204 YMERFRGERALDVFSYAGGFALHLALGFRE---VVAVDSSAEALRRAEENARLNGLGNV- 259
Query: 140 THVYDSTRINTSSQIDI-ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIK 198
                  R+  ++  D+  R++ + E FD ++LD P    G                   
Sbjct: 260 -------RVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKG------------------- 293
Query: 199 SYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE 243
                 KK ++  YR     + + I LLK+ GIL   +CS  + E
Sbjct: 294 ------KKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTE 332

>pdb|1WXW|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent Methyltransferase From Thermus Thermophillus Hb8 Length = 382

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 37/160 (23%)
Query: 80  YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ 139
           Y +   G++ LD+ +  G    H+AL   +   ++A+D S   + + EE  +   L ++ 
Sbjct: 204 YXERFRGERALDVFSYAGGFALHLALGFRE---VVAVDSSAEALRRAEENARLNGLGNV- 259
Query: 140 THVYDSTRINTSSQIDI-ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIK 198
                  R+  ++  D+  R++ + E FD ++LD P    G                   
Sbjct: 260 -------RVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKG------------------- 293
Query: 199 SYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
                 KK ++  YR     + + I LLK+ GIL   +CS
Sbjct: 294 ------KKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	397
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	6e-70
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	6e-66
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	1e-64
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	8e-64
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	1e-62
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	5e-62
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	1e-60
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	3e-59
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	3e-07
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	3e-06
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	5e-06
3f4k_A	257	Putative methyltransferase; structural genomics, P	5e-06
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	1e-05
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	2e-05
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	4e-05
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	5e-05
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	7e-05
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	8e-05
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	5e-04
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	5e-04
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	6e-04

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Length = 274

 Score =  220 bits (563), Expect = 6e-70
 Identities = 79/247 (31%), Positives = 119/247 (48%), Gaps = 42/247 (17%)

Query: 68  ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
           + Q++ S++    L+ +    +LDMCAAPG K TH+A LM + GT++A++ SK R   L+
Sbjct: 66  MPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALK 125

Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMF--- 184
             I ++ + +      D  +         + +   +  FD+ILLDAPCSG     +    
Sbjct: 126 SNINRMGVLNTIIINADMRKYK-------DYLLKNEIFFDKILLDAPCSGNI---IKDKN 175

Query: 185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN 244
            N +     ++ IK  +  QK+L+              I LLKKDG LVY TCS+ VEEN
Sbjct: 176 RNVS-----EEDIKYCSLRQKELIDIG-----------IDLLKKDGELVYSTCSMEVEEN 219

Query: 245 EAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
           E VI +IL +  +VEL+         G+  K+   +      R  P         +   F
Sbjct: 220 EEVIKYILQKRNDVELIIIKANEFK-GINIKEGYIKG---TLRVFP-------PNE--PF 266

Query: 305 FICKLRK 311
           FI KLRK
Sbjct: 267 FIAKLRK 273

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309

 Score =  211 bits (539), Expect = 6e-66
 Identities = 64/255 (25%), Positives = 96/255 (37%), Gaps = 38/255 (14%)

Query: 68  ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
           ILQ+  S L    LD  PG  V+D CAAPGNK +H+A L+ + G + A D    R+  + 
Sbjct: 85  ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 144

Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRP-M 183
             + +  +S  +    D   ++            +      ILLD  CSG G   ++   
Sbjct: 145 TLLARAGVSCCELAEEDFLAVS--------PSDPRYHEVHYILLDPSCSGSGMPSRQLEE 196

Query: 184 FYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE 243
                       ++ + A  Q++ L     F                 LVY TCSL  EE
Sbjct: 197 PGAGT---PSPVRLHALAGFQQRALCHALTF------------PSLQRLVYSTCSLCQEE 241

Query: 244 NEAVIAWILHRHP-EVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTI 302
           NE V+   L ++P    L   LP    +GL+             R  P        T + 
Sbjct: 242 NEDVVRDALQQNPGAFRLAPALPAWPHRGLS----TFPGAEHCLRASP------ETTLSS 291

Query: 303 GFFICKLRKKYGEAP 317
           GFF+  + +      
Sbjct: 292 GFFVAVIERVEVPRR 306

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Length = 464

 Score =  212 bits (542), Expect = 1e-64
 Identities = 73/248 (29%), Positives = 102/248 (41%), Gaps = 34/248 (13%)

Query: 68  ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
            +Q   +   G  LD +PG++VLD+ AAPG K TH+A  M   G L+A +    RV  L 
Sbjct: 84  YIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLL 143

Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMF-YN 186
           E +++       T       +           +     F R+LLDAPCSG G   MF  +
Sbjct: 144 ENVERWGAPLAVTQ-APPRAL----------AEAFGTYFHRVLLDAPCSGEG---MFRKD 189

Query: 187 ANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
             +  +      K  A +QK LL                LL   G+LVY TC+ + EENE
Sbjct: 190 REAARHWGPSAPKRMAEVQKALLAQA-----------SRLLGPGGVLVYSTCTFAPEENE 238

Query: 246 AVIAWILHRHPEVELVQT-LPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
            V+A  L  HPE  L    L  L   G+        +     R      P     +  G 
Sbjct: 239 GVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARL----WPHRLEGE--GH 292

Query: 305 FICKLRKK 312
           F+ + RK+
Sbjct: 293 FLARFRKE 300

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450

 Score =  210 bits (536), Expect = 8e-64
 Identities = 72/254 (28%), Positives = 111/254 (43%), Gaps = 59/254 (23%)

Query: 70  QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
           Q   S +A   LD +PG+ V+D+ AAPG K TH+A LM + G + A D  K R+ +L++ 
Sbjct: 244 QEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDF 303

Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---------- 179
           +K++ +  ++  V D+ +             + +E  D++LLDAPC+  G          
Sbjct: 304 VKRMGIKIVKPLVKDARKAPE---------IIGEEVADKVLLDAPCTSSGTIGKNPELRW 354

Query: 180 -QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
             R              KI   + +Q++LL++              L+K  G L+Y TCS
Sbjct: 355 RLRE------------DKINEMSQLQRELLESAA-----------RLVKPGGRLLYTTCS 391

Query: 239 LSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298
           +  EENE  I W L+ HPE +LV          L         +  M+       P   +
Sbjct: 392 IFKEENEKNIRWFLNVHPEFKLVP---------LKSPYDPGFLEGTMR-----AWPHRHS 437

Query: 299 TDTIGFFICKLRKK 312
           T   GFF   L K 
Sbjct: 438 TI--GFFYALLEKS 449

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315

 Score =  202 bits (517), Expect = 1e-62
 Identities = 76/247 (30%), Positives = 107/247 (43%), Gaps = 36/247 (14%)

Query: 68  ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
            +Q   S+     LD +PG+ V DM AAPG K +++A LM + G + A D  + R+ +  
Sbjct: 101 YIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR 160

Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY-N 186
             + +L + ++      S  I                 FD+ILLDAPC+G G     + N
Sbjct: 161 LNLSRLGVLNVILFHSSSLHI-----------GELNVEFDKILLDAPCTGSG---TIHKN 206

Query: 187 ANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
                N     IK    +Q +LL+               +LK  GILVY TCSL  EENE
Sbjct: 207 PERKWNRTMDDIKFCQGLQMRLLEKGLE-----------VLKPGGILVYSTCSLEPEENE 255

Query: 246 AVIAWILHRHPEVELV-QTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGF 304
            VI W L     VEL+     +  +      +L  E +   +     L P    T   GF
Sbjct: 256 FVIQWALDNFD-VELLPLKYGEPALTNPFGIELSEEIKNARR-----LYPDVHETS--GF 307

Query: 305 FICKLRK 311
           FI K+RK
Sbjct: 308 FIAKIRK 314

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456

 Score =  205 bits (524), Expect = 5e-62
 Identities = 62/253 (24%), Positives = 101/253 (39%), Gaps = 33/253 (13%)

Query: 68  ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
             Q   +++ G     +PG+KVLD+CAAPG K T +A  M   G L+  +    R   L 
Sbjct: 88  YSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILS 147

Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMF-YN 186
           E I++  +S+     +    +                 FDRI++DAPCSG G   MF  +
Sbjct: 148 ENIERWGVSNAIVTNHAPAELV----------PHFSGFFDRIVVDAPCSGEG---MFRKD 194

Query: 187 ANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE 245
            N+      +        Q+++L +            I +LK  G L+Y TC+ + EENE
Sbjct: 195 PNAIKEWTEESPLYCQKRQQEILSSA-----------IKMLKNKGQLIYSTCTFAPEENE 243

Query: 246 AVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFF 305
            +I+W++  +P V + +      +     +           R      P     +  G F
Sbjct: 244 EIISWLVENYP-VTIEEIPLTQSVSSGRSEWGSVAGLEKTIRI----WPHKDQGE--GHF 296

Query: 306 ICKLRKKYGEAPE 318
           + KL         
Sbjct: 297 VAKLTFHGQNQMH 309

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479

 Score =  202 bits (516), Expect = 1e-60
 Identities = 67/274 (24%), Positives = 111/274 (40%), Gaps = 54/274 (19%)

Query: 63  DSSMGILQNLPSILAGHY---------------LDVQPGQKVLDMCAAPGNKLTHIALLM 107
           +     L +    L+G +                D    Q+V+D+ AAPG+K T I+  M
Sbjct: 80  NEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARM 139

Query: 108 NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFD 167
           N+ G ++A + S  RV  L   I +  +S++    +D                   E FD
Sbjct: 140 NNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFG----------AAVPEMFD 189

Query: 168 RILLDAPCSGFGQRPMF-YNANSFLNLD-KKIKSYANIQKKLLQAVYRFVSLFDWQGIPL 225
            ILLDAPCSG G   +   + ++  N   +  +  A  Q++L+ +               
Sbjct: 190 AILLDAPCSGEG---VVRKDPDALKNWSPESNQEIAATQRELIDSA-----------FHA 235

Query: 226 LKKDGILVYCTCSLSVEENEAVIAWILHRHPE-VELVQTLPQLGMKGLAHKDLEAEDQAV 284
           L+  G LVY TC+L+ EENEAV  W+   +P+ VE +              +    ++  
Sbjct: 236 LRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP-----GANKALTEEGF 290

Query: 285 MQRFGPPLIPTDRNTDTIGFFICKLRKKYGEAPE 318
           +      + P   + +  GFF+ +LRK       
Sbjct: 291 LH-----VFPQIYDCE--GFFVARLRKTQAIPAL 317

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Length = 429

 Score =  197 bits (503), Expect = 3e-59
 Identities = 69/254 (27%), Positives = 103/254 (40%), Gaps = 66/254 (25%)

Query: 70  QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
           Q+  +     +L  Q G+ +LD+CAAPG K THI  +  +   ++A+D  + R++++ + 
Sbjct: 231 QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDN 289

Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---------- 179
           +K+L +        D    +             ++ FDRILLDAPCS  G          
Sbjct: 290 LKRLGMK-ATVKQGDGRYPSQ---------WCGEQQFDRILLDAPCSATGVIRRHPDIKW 339

Query: 180 -QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS 238
            +R             + I   A +Q ++L A+        W   P LK  G LVY TCS
Sbjct: 340 LRRD------------RDIPELAQLQSEILDAI--------W---PHLKTGGTLVYATCS 376

Query: 239 LSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN 298
           +  EEN   I   L R  + EL               +    +Q   Q      +P    
Sbjct: 377 VLPEENSLQIKAFLQRTADAELC--------------ETGTPEQPGKQ-----NLPGAEE 417

Query: 299 TDTIGFFICKLRKK 312
            D  GFF  KL KK
Sbjct: 418 GD--GFFYAKLIKK 429

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 48/188 (25%)

Query: 81  LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
             ++ G  VLD+    G  L +++ ++ + G + A+D  +  V    E + KL L +++ 
Sbjct: 33  FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEV 92

Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY 200
                       + +  ++ L   + D I        F              L +     
Sbjct: 93  L-----------KSEENKIPLPDNTVDFIF-----MAFTFH----------ELSEP---- 122

Query: 201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVEL 260
                K L+ + R           + K    L         +E           + E E+
Sbjct: 123 ----LKFLEELKR-----------VAKPFAYLA---IIDWKKEERDKGPPPEEVYSEWEV 164

Query: 261 VQTLPQLG 268
              L   G
Sbjct: 165 GLILEDAG 172

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 5e-08
 Identities = 62/439 (14%), Positives = 122/439 (27%), Gaps = 150/439 (34%)

Query: 1   MRDIQS---------QCYCLWLDR-AGFVSVLRLPARQRPSLSIYCYALDILFRGVAVEI 50
           + ++Q+          C  L   R       L        SL  +   L         E+
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT------PDEV 303

Query: 51  TNVLSQVPNVALDSSMGILQNLPS-ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMND 109
            ++L +  +            LP  +L  +          L + A          L   D
Sbjct: 304 KSLLLKYLDCRPQD-------LPREVLTTNPR-------RLSIIAE----SIRDGLATWD 345

Query: 110 TGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY-------DSTRI---------NTSSQ 153
               +  DK     T +E ++  L+ +  +  ++        S  I             +
Sbjct: 346 NWKHVNCDKLT---TIIESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 154 IDIERM--KLQKESFDRILLDA-PCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQA 210
            D+  +  KL K S    L++  P       P  Y     L L  K+++   + + ++  
Sbjct: 402 SDVMVVVNKLHKYS----LVEKQPKESTISIPSIY-----LELKVKLENEYALHRSIVDH 452

Query: 211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK 270
            Y     FD   +     D    Y                 +  H             +K
Sbjct: 453 -YNIPKTFDSDDLIPPYLDQ---Y-------------FYSHIGHH-------------LK 482

Query: 271 GLAHKDLEAEDQAVMQ--RF--------GPPLIPTDRNTDTIGFFICKLRKKYGEAPEIY 320
            + H +     + V    RF              +    +T+        K Y      Y
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL-----KFYKP----Y 533

Query: 321 I---HPH----LNDCIVIGPLLKLSQSVVHHP----VQIIVDQPCALAVLRGADVFAPGV 369
           I    P     +N   ++  L K+ ++++       ++I      AL             
Sbjct: 534 ICDNDPKYERLVNA--ILDFLPKIEENLICSKYTDLLRI------AL------------- 572

Query: 370 LAMPLGKNSYKTPYRRVQK 388
             M   +  ++  +++VQ+
Sbjct: 573 --MAEDEAIFEEAHKQVQR 589

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 11/96 (11%)

Query: 79  HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
            Y  + PG  +++     G     +A ++   G +++ +  +       E IK       
Sbjct: 87  AYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDR 146

Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
            T             +      +++E+ D ++LD P
Sbjct: 147 VTIK-----------LKDIYEGIEEENVDHVILDLP 171

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 26/184 (14%), Positives = 56/184 (30%), Gaps = 45/184 (24%)

Query: 83  VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV 142
           +     V+D     GN     A L   +  + A D  +     L +T ++L         
Sbjct: 20  LDDESIVVDATMGNGN---DTAFLAGLSKKVYAFDVQEQA---LGKTSQRLS-------- 65

Query: 143 YDSTRINTSSQIDIERMKLQKESFDRI--LLDAPCSGFGQRPMFYNANSFLNLDKKIKSY 200
                      + IE  +L  +  + +   +  P          +N     + DK + + 
Sbjct: 66  ----------DLGIENTELILDGHENLDHYVREPIRAA-----IFNLGYLPSADKSVITK 110

Query: 201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL---VYCTCSLSVEENEAVIAWILHRHPE 257
            +   + ++ +              L+  G L   +Y        E +AV+ +++     
Sbjct: 111 PHTTLEAIEKILD-----------RLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQR 159

Query: 258 VELV 261
           V   
Sbjct: 160 VFTA 163

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280

 Score = 46.7 bits (110), Expect = 5e-06
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 8/96 (8%)

Query: 79  HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
           H  D+ PG +VL+  A  G     +   +   G +I+ ++           +        
Sbjct: 93  HEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP 152

Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
                           D+   +L   S DR +LD  
Sbjct: 153 DNW--------RLVVSDLADSELPDGSVDRAVLDML 180

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 27/222 (12%), Positives = 63/222 (28%), Gaps = 54/222 (24%)

Query: 76  LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL 135
                 ++    K+ D+    G +   +A  +   G +  +D     +    E   K   
Sbjct: 37  AVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANC 94

Query: 136 SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDK 195
           +          R+       ++ +  Q E  D I               ++  +  N+  
Sbjct: 95  AD---------RVKG-ITGSMDNLPFQNEELDLI---------------WSEGAIYNIGF 129

Query: 196 KIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL-VYCTCSLSVEENEAVIAWILHR 254
                    ++ +    +            LKK G + V      + E    +  + +  
Sbjct: 130 ---------ERGMNEWSK-----------YLKKGGFIAVSEASWFTSERPAEIEDFWMDA 169

Query: 255 HPEV----ELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPL 292
           +PE+      +  + + G    AH  L   +    + +  P 
Sbjct: 170 YPEISVIPTCIDKMERAGYTPTAHFIL--PENCWTEHYFAPQ 209

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 37/174 (21%)

Query: 81  LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
           + V+ G  V+D     GN    +A L+ + G +   D                    IQ 
Sbjct: 18  MFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFD--------------------IQD 57

Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY 200
               +T    +    I+R+ L K+    +     C     + + +N     + D  I + 
Sbjct: 58  KAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCP---VKAVMFNLGYLPSGDHSISTR 114

Query: 201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDG---ILVYCTCSLSVEENEAVIAWI 251
                + L                LL   G   +++Y       EE E V+ ++
Sbjct: 115 PETTIQALSKAME-----------LLVTGGIITVVIYYGGDTGFEEKEKVLEFL 157

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 11/96 (11%)

Query: 79  HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
               ++PG  +L++    GN  ++I   +N  GTL  +++ +  + K  + + +      
Sbjct: 104 MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGN 163

Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
                         + DI       + +D ++ D P
Sbjct: 164 VRTS----------RSDIADFI-SDQMYDAVIADIP 188

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 41/201 (20%), Positives = 77/201 (38%), Gaps = 47/201 (23%)

Query: 78  GHYLDVQP---------GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
           G YLD +          G++ LD+ +  G    H+AL   +    +A+D S   + + EE
Sbjct: 193 GAYLDQRENRLYMERFRGERALDVFSYAGGFALHLALGFREV---VAVDSSAEALRRAEE 249

Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
             +   L +++    ++  +       + R++ + E FD ++LD P              
Sbjct: 250 NARLNGLGNVRVLEANAFDL-------LRRLEKEGERFDLVVLDPP-------------- 288

Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN---E 245
           +F    K ++      K++             + I LLK+ GIL   +CS  + E     
Sbjct: 289 AFAKGKKDVERAYRAYKEVNL-----------RAIKLLKEGGILATASCSHHMTEPLFYA 337

Query: 246 AVIAWILHRHPEVELVQTLPQ 266
            V       H  + +V+   Q
Sbjct: 338 MVAEAAQDAHRLLRVVEKRGQ 358

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 41/206 (19%), Positives = 78/206 (37%), Gaps = 49/206 (23%)

Query: 78  GHYLD-----------VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKL 126
           G +LD           VQPG +VLD+    G     I   +     +I +DKS   +   
Sbjct: 199 GFFLDQRENRLALEKWVQPGDRVLDVFTYTGG--FAIHAAIAGADEVIGIDKSPRAIETA 256

Query: 127 EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
           +E  K   +   ++  V  +          +E+++ + E FD ++LD P           
Sbjct: 257 KENAKLNGVEDRMKFIVGSAFEE-------MEKLQKKGEKFDIVVLDPP----------- 298

Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN- 244
                        ++   +K L   +  + ++    G+ L+K  GILV C+CS  V+   
Sbjct: 299 -------------AFVQHEKDLKAGLRAYFNVNF-AGLNLVKDGGILVTCSCSQHVDLQM 344

Query: 245 --EAVIAWILHRHPEVELVQTLPQLG 268
             + +IA        +++++      
Sbjct: 345 FKDMIIAAGAKAGKFLKMLEPYRTQA 370

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 27/205 (13%), Positives = 61/205 (29%), Gaps = 52/205 (25%)

Query: 82  DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH 141
           ++     + D+    G +   +A  +   G +  LD     +       ++  L +    
Sbjct: 43  NLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQN---- 96

Query: 142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA 201
                R+       ++ +  + E  D I               ++  +  N+        
Sbjct: 97  -----RVTG-IVGSMDDLPFRNEELDLI---------------WSEGAIYNIGF------ 129

Query: 202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN-EAVIAWILHRHPEV-- 258
              ++ L    ++           LKK G L    CS   +E    +  + +  +PE+  
Sbjct: 130 ---ERGLNEWRKY-----------LKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDT 175

Query: 259 --ELVQTLPQLGMKGLAHKDLEAED 281
               V  + + G   +A   L    
Sbjct: 176 IPNQVAKIHKAGYLPVATFILPENC 200

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 43.1 bits (101), Expect = 8e-05
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 11/96 (11%)

Query: 79  HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
             LDV+ G +++D     G     +A  +  +G + A +K +      E  + K  L   
Sbjct: 106 MMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIE- 164

Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
                       + ++        ++  D + LD P
Sbjct: 165 ----------RVTIKVRDISEGFDEKDVDALFLDVP 190

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 81  LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT 140
             V+PG+K+L++    G+    +A  +  +G +  +D + P       T+ +     +  
Sbjct: 39  WQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDY-GAPLTLGQAWNHLLAG 97

Query: 141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
            + D   ++ ++ +  +   +  + FDR+          
Sbjct: 98  PLGDRLTVHFNTNLSDDLGPIADQHFDRV-----VLAHS 131

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 34/204 (16%), Positives = 71/204 (34%), Gaps = 55/204 (26%)

Query: 78  GHYLD-----------VQPGQKVLDMCAAPGNKLTHIALLMNDTGT-LIALDKSKPRVTK 125
           G+YLD           V+PG++VLD+ +  G      AL     G   +A+DK    +  
Sbjct: 196 GYYLDQRENRRLFEAMVRPGERVLDVYSYVG----GFALRAARKGAYALAVDKDLEALGV 251

Query: 126 LEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFY 185
           L++   +L L  +     ++          +  ++  +  F  +LLD P           
Sbjct: 252 LDQAALRLGLR-VDIRHGEA----------LPTLRGLEGPFHHVLLDPP----------- 289

Query: 186 NANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN- 244
              + +   +++ +       L++           + + LL ++G L   +CS  +    
Sbjct: 290 ---TLVKRPEELPAMKRHLVDLVR-----------EALRLLAEEGFLWLSSCSYHLRLED 335

Query: 245 --EAVIAWILHRHPEVELVQTLPQ 266
             E            + + +   Q
Sbjct: 336 LLEVARRAAADLGRRLRVHRVTYQ 359

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 10/96 (10%)

Query: 79  HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
             LD+ PG +VL+     G     +A  + + G + + +     + + E  ++       
Sbjct: 90  TLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVEN 149

Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP 174
                            +E  +L++ ++D + LD  
Sbjct: 150 VRFHLG----------KLEEAELEEAAYDGVALDLM 175

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	397
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	100.0
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	100.0
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	100.0
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	100.0
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	100.0
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	100.0
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	100.0
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	100.0
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	100.0
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.82
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.76
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.74
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.73
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.72
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.72
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.7
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.69
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.67
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.66
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.64
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.63
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.61
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.6
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.6
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.59
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.58
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.58
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.58
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.58
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.57
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.56
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.56
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.54
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.54
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.53
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.53
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.52
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.5
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.5
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.5
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.5
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.49
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.48
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.48
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.48
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.47
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.47
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.46
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.46
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.46
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.45
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.45
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.45
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.44
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.44
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.43
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.43
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.43
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.42
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.41
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.41
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.4
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.4
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.4
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.4
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.4
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.4
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.4
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.4
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.4
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.4
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.4
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.38
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.38
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.38
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.37
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.37
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.37
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.37
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.36
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.36
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.36
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.35
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.35
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.35
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.35
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.35
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.35
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.35
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.34
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.34
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.34
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.34
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.34
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.33
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.32
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.31
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.31
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.31
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.31
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.31
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.31
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.3
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.3
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.3
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.3
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.29
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.29
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.29
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.29
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.28
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.28
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.28
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.28
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.28
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.27
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.27
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.27
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.27
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.27
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.26
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.26
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.26
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.26
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.26
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.26
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.26
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.25
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.25
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.25
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.24
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.24
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.24
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.23
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.23
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.22
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.22
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.22
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.21
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.21
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.21
3ocj_A	305	Putative exported protein; structural genomics, PS	99.21
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.21
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.2
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.2
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.19
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.18
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.18
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.18
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.17
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.17
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.17
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.17
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.17
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.17
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.17
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.17
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.16
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.15
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.15
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.15
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.15
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.15
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.14
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.14
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.14
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.14
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.14
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.14
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.13
2o07_A	304	Spermidine synthase; structural genomics, structur	99.13
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.13
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.12
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.12
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.11
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.11
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.11
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.1
3lkd_A	542	Type I restriction-modification system methyltrans	99.1
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.1
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.1
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.09
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.08
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.08
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.08
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.08
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.08
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.08
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.07
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.07
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.07
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.07
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.07
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.06
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.06
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.06
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.05
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.05
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.05
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.05
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.04
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.04
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.04
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.04
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.03
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.03
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.02
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.02
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.02
3khk_A	544	Type I restriction-modification system methylation	99.02
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.01
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.01
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.01
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.01
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.01
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.0
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.0
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.99
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.99
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.99
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.99
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.99
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.98
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.98
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.97
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.97
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.97
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.96
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.96
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.95
3ufb_A	530	Type I restriction-modification system methyltran	98.95
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.94
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.94
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.94
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.94
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.94
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.93
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.91
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.91
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.91
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.9
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.89
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.89
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.89
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.86
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.86
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.85
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.84
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.84
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.83
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.83
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.83
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.81
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.79
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.77
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.7
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.68
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.67
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.67
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.67
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.66
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.66
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.66
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.63
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.63
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.62
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.61
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.6
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.59
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.52
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.5
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.48
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.47
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.46
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.4
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.36
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.35
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.34
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.32
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.3
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.29
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.28
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.25
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.22
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.19
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.14
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	98.14
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.12
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.12
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.04
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.0
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.0
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.98
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.84
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.8
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.74
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.65
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.62
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.15
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.0
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	96.94
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	96.92
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.91
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.91
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.84
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.82
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.74
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.6
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.04
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.01
3me5_A	482	Cytosine-specific methyltransferase; structural ge	95.77
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.72
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.63
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.55
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	95.53
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.5
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.32
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	95.32
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.24
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.22
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.21
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.04
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	94.94
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.92
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.9
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	94.9
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.87
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	94.85
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.64
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	94.51
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.41
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	94.22
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	94.18
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.16
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	94.16
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	93.87
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	93.84
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	93.64
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.61
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.5
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	93.49
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	93.47
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	93.46
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	93.36
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.27
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	93.25
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	93.18
3gms_A	340	Putative NADPH:quinone reductase; structural genom	93.15
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	93.0
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.9
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	92.83
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	92.77
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	92.69
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	92.54
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	92.52
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	92.45
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	92.29
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	91.99
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	91.98
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	91.95
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	91.92
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	91.82
3d79_A	179	PUA domain, putative uncharacterized protein PH073	91.79
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	91.74
1q7h_A	153	Conserved hypothetical protein; structural genomic	91.71
3rih_A	293	Short chain dehydrogenase or reductase; structural	91.66
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	91.61
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.55
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	91.37
4eye_A	342	Probable oxidoreductase; structural genomics, niai	91.33
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	91.31
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	91.23
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	91.21
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	91.16
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	91.11
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	90.97
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	90.96
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	90.8
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	90.7
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	90.62
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	90.59
3r90_A	188	Malignant T cell-amplified sequence 1; structural	90.11
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	90.02
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	89.94
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	89.89
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	89.84
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	89.72
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	89.72
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	89.66
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	89.61
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	89.54
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	89.26
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	89.22
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	89.2
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	89.13
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	89.06
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	88.93
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	88.85
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	88.75
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	88.69
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	88.68
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	88.67
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	88.57
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	88.57
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	88.53
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	88.52
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	88.43
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	88.4
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	88.25
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	88.21
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	88.18
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	88.09
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	87.98
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	87.95
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	87.92
1xhl_A	297	Short-chain dehydrogenase/reductase family member	87.85
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	87.79
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	87.75
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	87.72
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	87.56
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	87.51
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	87.49
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	87.48
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	87.45
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	87.39
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	87.37
3imf_A	257	Short chain dehydrogenase; structural genomics, in	87.34
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	87.22
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	87.21
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	87.2
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	87.19
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	87.1
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	87.08
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	87.06
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	87.05
1xkq_A	280	Short-chain reductase family member (5D234); parra	87.05
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	87.01
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	86.93
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	86.9
3cxt_A	291	Dehydrogenase with different specificities; rossma	86.9
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	86.85
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	86.85
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	86.84
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	86.74
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	86.66
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	86.64
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	86.62
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	86.61
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	86.42
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	86.3
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	86.3
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	86.17
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	86.06
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	86.0
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	85.93
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	85.92
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	85.84
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	85.81
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	85.79
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	85.79
1xq1_A	266	Putative tropinone reducatse; structural genomics,	85.57
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	85.53
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	85.39
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	85.37
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	85.24
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	85.22
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	85.21
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	85.19
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	85.1
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	85.01
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	85.01
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	85.0
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	84.91
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	84.91
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	84.85
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	84.82
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	84.8
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	84.74
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	84.72
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	84.58
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	84.44
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	84.41
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	84.33
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	84.15
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	83.58
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	83.52
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	83.47
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	83.42
3zv0_C	195	H/ACA ribonucleoprotein complex subunit 4; cell cy	83.33
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	82.98
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	82.96
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	82.95
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	82.86
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	82.8
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	82.64
4dqx_A	277	Probable oxidoreductase protein; structural genomi	82.49
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	82.47
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	82.42
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	82.17

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=100.00  E-value=3.9e-46  Score=371.08  Aligned_cols=229  Identities=25%  Similarity=0.358  Sum_probs=182.3

Q ss_pred             cccccCCCcc---cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q psy17793         52 NVLSQVPNVA---LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE  128 (397)
Q Consensus        52 ~~~~~~p~~~---~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~  128 (397)
                      +.+.++|.+.   +.-+.|++||++|++++.+|++++|++||||||||||||+|+|+++ +.+.|+|+|+++.|++.+++
T Consensus       112 g~~~~~p~~~~g~~~vqd~~iQd~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~  190 (359)
T 4fzv_A          112 GDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQK  190 (359)
T ss_dssp             TCCCCCCCCCBCTTSSBSEEEECGGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHH
T ss_pred             CChhcCCCcccCceeccchhhhCHHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHH
Confidence            4456677764   4446689999999999999999999999999999999999999976 56789999999999999999


Q ss_pred             HHHHhCCC------cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC-----CCcccccccCccchHHHH
Q psy17793        129 TIKKLQLS------SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG-----QRPMFYNANSFLNLDKKI  197 (397)
Q Consensus       129 n~~~~g~~------~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G-----~~p~~~~~~s~~~~~~~~  197 (397)
                      |++++|..      ++.+...|++.+.          ....+.||+||+||||||+|     .+|+..+.++    ...+
T Consensus       191 ~l~r~~~~~~~~~~~v~v~~~D~~~~~----------~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~----~~~~  256 (359)
T 4fzv_A          191 ILHSYVPEEIRDGNQVRVTSWDGRKWG----------ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSR----KKER  256 (359)
T ss_dssp             HHHHHSCTTTTTSSSEEEECCCGGGHH----------HHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGG----HHHH
T ss_pred             HHHHhhhhhhccCCceEEEeCchhhcc----------hhccccCCEEEECCccCCCCCcccccChhhhhhCC----HHHH
Confidence            99999863      6899999998763          23457899999999999984     3677788888    7999


Q ss_pred             HHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcc----cCCCCCc
Q psy17793        198 KSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQ----LGMKGLA  273 (397)
Q Consensus       198 ~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~----~~~~g~~  273 (397)
                      ..++.+|++||.+           |+++|||||+|||||||++++|||+||+++|++++++..+++...    +......
T Consensus       257 ~~l~~lQ~~iL~~-----------a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~  325 (359)
T 4fzv_A          257 QILPVLQVQLLAA-----------GLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMD  325 (359)
T ss_dssp             HTHHHHHHHHHHH-----------HHHTEEEEEEEEEEESCCCTTTTHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHTT
T ss_pred             HHHHHHHHHHHHH-----------HHhcCCCCcEEEEEeCCCchhhCHHHHHHHHHhCCCCccccccccccccccccccc
Confidence            9999999999999           999999999999999999999999999999999876544332211    0000000


Q ss_pred             cCCCchhhhcceEEeCCCCCCCCCCCCCCcEEEEeeecc
Q psy17793        274 HKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKLRKK  312 (397)
Q Consensus       274 ~~~~~~~~~~~~~r~~P~~~t~~~~~~t~GFFiA~l~K~  312 (397)
                      ...+ ....+...|+.|+.     ..+++|||+|+|+|.
T Consensus       326 ~~~~-~~~~~~g~r~~P~~-----~~~~gGFFiA~L~Kv  358 (359)
T 4fzv_A          326 TFCF-FSSCQVGELVIPNL-----MANFGPMYFCKMRRL  358 (359)
T ss_dssp             TCEE-CTTCSSSEEEECBT-----TBCCCCEEEEEEEEC
T ss_pred             cccc-CccccceEEECCCC-----CCCCCCEEEEEEEEC
Confidence            0000 11223456788852     346788999999985

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=100.00  E-value=1.8e-43  Score=346.14  Aligned_cols=219  Identities=30%  Similarity=0.446  Sum_probs=177.6

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      +++|++++||++|++++.+|++++|++|||+|||||+||+++|+++++.++|+|+|+++.+++.+++|++++|+.+|+++
T Consensus        79 ~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~  158 (309)
T 2b9e_A           79 YRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELA  158 (309)
T ss_dssp             HHTTSEEECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             HHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE
Confidence            68999999999999999999999999999999999999999999987789999999999999999999999999999999


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---Cccccccc--CccchHHHHHHHHHHHHHHHHHHhhhhc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNAN--SFLNLDKKIKSYANIQKKLLQAVYRFVS  216 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~--s~~~~~~~~~~l~~~Q~~lL~~~~~f~~  216 (397)
                      .+|+..+...      ..  ...+||+|++||||||+|.   +|+..+.+  +    .+++..++.+|+++|++      
T Consensus       159 ~~D~~~~~~~------~~--~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~----~~~~~~l~~~Q~~iL~~------  220 (309)
T 2b9e_A          159 EEDFLAVSPS------DP--RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPS----PVRLHALAGFQQRALCH------  220 (309)
T ss_dssp             ECCGGGSCTT------CG--GGTTEEEEEECCCCCC----------------------CCHHHHHHHHHHHHHH------
T ss_pred             eCChHhcCcc------cc--ccCCCCEEEEcCCcCCCCCCccCCChhhhccCC----HHHHHHHHHHHHHHHHH------
Confidence            9999876311      00  1147999999999999994   46665533  4    46788899999999999      


Q ss_pred             cccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCC-cEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCC
Q psy17793        217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE-VELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPT  295 (397)
Q Consensus       217 ~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~-~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~  295 (397)
                           |+++|+ ||+|||||||++++|||++|.++|+++++ ++++++.+.|+..+...  +.  ....++|++|+    
T Consensus       221 -----a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~r~~P~----  286 (309)
T 2b9e_A          221 -----ALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLST--FP--GAEHCLRASPE----  286 (309)
T ss_dssp             -----HTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTSTTTEEECCCCTTCCCBCCSS--ST--TGGGSEEECHH----
T ss_pred             -----HHhccC-CCEEEEECCCCChHHhHHHHHHHHHhCCCcEEEeccccccccccccc--cC--CCCCeEEECCC----
Confidence                 999987 99999999999999999999999999998 99988766554333321  11  12457889885    


Q ss_pred             CCCCCCCcEEEEeeecccC
Q psy17793        296 DRNTDTIGFFICKLRKKYG  314 (397)
Q Consensus       296 ~~~~~t~GFFiA~l~K~~~  314 (397)
                        .++|+|||+|+|+|...
T Consensus       287 --~~~~dGfF~A~l~k~~~  303 (309)
T 2b9e_A          287 --TTLSSGFFVAVIERVEV  303 (309)
T ss_dssp             --HHSSCSEEEEEEEEC--
T ss_pred             --CCCCCCeEEEEEEECCC
Confidence              57899999999999753

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=100.00  E-value=1e-42  Score=357.13  Aligned_cols=221  Identities=31%  Similarity=0.453  Sum_probs=191.2

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      +.+|++++||++|++++.++++++|++|||+|||||++|+++|+++++.++|+|+|+|+.+++.+++|++++|+. |.++
T Consensus        78 ~~~G~~~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~  156 (464)
T 3m6w_A           78 FYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVT  156 (464)
T ss_dssp             HHTTSEEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEE
T ss_pred             HhCCeEEEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEE
Confidence            789999999999999999999999999999999999999999999987899999999999999999999999998 9999


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      ++|+..+.          .+..+.||+|++||||||+|.   +|+..+.|+    .+.+..++.+|+++|++        
T Consensus       157 ~~Da~~l~----------~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~----~~~~~~l~~~Q~~iL~~--------  214 (464)
T 3m6w_A          157 QAPPRALA----------EAFGTYFHRVLLDAPCSGEGMFRKDREAARHWG----PSAPKRMAEVQKALLAQ--------  214 (464)
T ss_dssp             CSCHHHHH----------HHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCC----TTHHHHHHHHHHHHHHH--------
T ss_pred             ECCHHHhh----------hhccccCCEEEECCCcCCccccccChHHhhhcC----HHHHHHHHHHHHHHHHH--------
Confidence            99987752          123568999999999999993   688888888    78999999999999999        


Q ss_pred             cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCC-CCCccCCCchhhhcceEEeCCCCCCCCC
Q psy17793        219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGM-KGLAHKDLEAEDQAVMQRFGPPLIPTDR  297 (397)
Q Consensus       219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~-~g~~~~~~~~~~~~~~~r~~P~~~t~~~  297 (397)
                         +.++|||||+|||||||++++|||++|+++|+++++++++++....+. ++.+...........+.|++|+      
T Consensus       215 ---a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~------  285 (464)
T 3m6w_A          215 ---ASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPH------  285 (464)
T ss_dssp             ---HHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTEEEECCCCSTTSEECCGGGTTTCGGGGGSEEECTT------
T ss_pred             ---HHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCCCcEEEecccccccccCcccccccccccCCeEEECCC------
Confidence               999999999999999999999999999999999999999988643221 1211111111123457899995      


Q ss_pred             CCCCCcEEEEeeecccC
Q psy17793        298 NTDTIGFFICKLRKKYG  314 (397)
Q Consensus       298 ~~~t~GFFiA~l~K~~~  314 (397)
                      .++|+|||+|+|+|..+
T Consensus       286 ~~~~dGfF~A~l~k~~~  302 (464)
T 3m6w_A          286 RLEGEGHFLARFRKEGG  302 (464)
T ss_dssp             TSSSSCEEEEEEEECSC
T ss_pred             CCCceeEEEEEEEECCC
Confidence            67999999999999854

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=100.00  E-value=7.4e-43  Score=357.63  Aligned_cols=220  Identities=28%  Similarity=0.440  Sum_probs=190.0

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      +.+|++++||++|++++.+|++++|++|||+|||||+||+++|+++++.++|+|+|+|+.+++.+++|++++|+.||.++
T Consensus        82 ~~~G~~~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~  161 (456)
T 3m4x_A           82 HQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVT  161 (456)
T ss_dssp             HHTTSCEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEE
T ss_pred             HhCCcEEEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Confidence            78999999999999999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC---CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G---~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      +.|+..+.          ....+.||+|++||||||+|   .+|+..+.|+    ...+..++.+|+++|.+        
T Consensus       162 ~~Da~~l~----------~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~----~~~~~~l~~~Q~~iL~~--------  219 (456)
T 3m4x_A          162 NHAPAELV----------PHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWT----EESPLYCQKRQQEILSS--------  219 (456)
T ss_dssp             CCCHHHHH----------HHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCC----TTHHHHHHHHHHHHHHH--------
T ss_pred             eCCHHHhh----------hhccccCCEEEECCCCCCccccccCHHHhhhcC----HHHHHHHHHHHHHHHHH--------
Confidence            99987762          12346899999999999999   3788888888    78999999999999999        


Q ss_pred             cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCC-CCCccCCCchhhhcceEEeCCCCCCCCC
Q psy17793        219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGM-KGLAHKDLEAEDQAVMQRFGPPLIPTDR  297 (397)
Q Consensus       219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~-~g~~~~~~~~~~~~~~~r~~P~~~t~~~  297 (397)
                         +.++|||||+|||||||++++|||++|+++|++++ ++++++....+. .+.+..... .....+.|++|+      
T Consensus       220 ---a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~-~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~P~------  288 (456)
T 3m4x_A          220 ---AIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYP-VTIEEIPLTQSVSSGRSEWGSV-AGLEKTIRIWPH------  288 (456)
T ss_dssp             ---HHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS-EEEECCCCSSCCEECCGGGSSS-TTGGGSEEECTT------
T ss_pred             ---HHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCC-CEEEeccccccccccccccccc-cccCCeEEECCC------
Confidence               99999999999999999999999999999999998 999987643221 111111100 022457889895      


Q ss_pred             CCCCCcEEEEeeecccC
Q psy17793        298 NTDTIGFFICKLRKKYG  314 (397)
Q Consensus       298 ~~~t~GFFiA~l~K~~~  314 (397)
                      .++|+|||+|+|+|..+
T Consensus       289 ~~~~dGFF~A~l~k~~~  305 (456)
T 3m4x_A          289 KDQGEGHFVAKLTFHGQ  305 (456)
T ss_dssp             TSSSSCEEEEEEEECSC
T ss_pred             CCCCcCeEEEEEEECCC
Confidence            67999999999999753

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=100.00  E-value=5e-40  Score=339.21  Aligned_cols=216  Identities=33%  Similarity=0.475  Sum_probs=186.0

Q ss_pred             cCCCcEEEechhHHHHHhccCCC--CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQ--PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQ  139 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~--~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~  139 (397)
                      +.+|.+++||++|++++.+|+++  +|++|||+|||||+||+++|+++++.+.|+|+|+|+.|++.+++|++++|+.+|+
T Consensus        92 ~~~G~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~  171 (479)
T 2frx_A           92 HLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVA  171 (479)
T ss_dssp             HHTTSEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEE
T ss_pred             HhCcEEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEE
Confidence            78999999999999999999998  9999999999999999999999877899999999999999999999999999999


Q ss_pred             EEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhc
Q psy17793        140 THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS  216 (397)
Q Consensus       140 ~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~  216 (397)
                      ++++|+..+.          ....+.||+|++||||||+|.   +|+..+.|+    .+.+..++.+|+++|.+      
T Consensus       172 ~~~~D~~~~~----------~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~----~~~~~~l~~~q~~iL~~------  231 (479)
T 2frx_A          172 LTHFDGRVFG----------AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWS----PESNQEIAATQRELIDS------  231 (479)
T ss_dssp             EECCCSTTHH----------HHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCC----HHHHHHHHHHHHHHHHH------
T ss_pred             EEeCCHHHhh----------hhccccCCEEEECCCcCCcccccCCHHHHhhcC----HhHHHHHHHHHHHHHHH------
Confidence            9999998762          113468999999999999994   688888898    79999999999999999      


Q ss_pred             cccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCc-EEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCC
Q psy17793        217 LFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEV-ELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPT  295 (397)
Q Consensus       217 ~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~-~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~  295 (397)
                           +.++|||||+|||||||++++|||++|+++|++++++ +++++...+.  +... .+.   ...+.|++|+    
T Consensus       232 -----a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~--~~~~-~~~---~~g~~r~~P~----  296 (479)
T 2frx_A          232 -----AFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP--GANK-ALT---EEGFLHVFPQ----  296 (479)
T ss_dssp             -----HHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHSTTTEEECCCTTSST--TGGG-GBC---TTSCEEECTT----
T ss_pred             -----HHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCCCceeccccccccc--cccc-ccc---cCCeEEECCC----
Confidence                 9999999999999999999999999999999999986 5555432221  1110 011   1245788885    


Q ss_pred             CCCCCCCcEEEEeeecccC
Q psy17793        296 DRNTDTIGFFICKLRKKYG  314 (397)
Q Consensus       296 ~~~~~t~GFFiA~l~K~~~  314 (397)
                        .++++|||+|+|+|...
T Consensus       297 --~~~~dGfF~A~l~k~~~  313 (479)
T 2frx_A          297 --IYDCEGFFVARLRKTQA  313 (479)
T ss_dssp             --TTTSCCEEEEEEEECSC
T ss_pred             --CCCcCccEEEEEEEcCC
Confidence              67899999999999753

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=100.00  E-value=1.6e-39  Score=318.63  Aligned_cols=215  Identities=36%  Similarity=0.547  Sum_probs=180.9

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      +..|++++||.+|++++.++++++|++|||+|||||++|+++|+.+++.++|+|+|+|+.+++.+++|++++|+.+++++
T Consensus        95 ~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~  174 (315)
T 1ixk_A           95 FLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILF  174 (315)
T ss_dssp             HHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             HhcceEEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            67999999999999999999999999999999999999999999987778999999999999999999999999999999


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      ++|+..+.           ...++||+|++||||||+|.   +|+..+.|+    ...+..+...|.++|++        
T Consensus       175 ~~D~~~~~-----------~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~----~~~~~~~~~~q~~~L~~--------  231 (315)
T 1ixk_A          175 HSSSLHIG-----------ELNVEFDKILLDAPCTGSGTIHKNPERKWNRT----MDDIKFCQGLQMRLLEK--------  231 (315)
T ss_dssp             SSCGGGGG-----------GGCCCEEEEEEECCTTSTTTCC--------CC----HHHHHHHHHHHHHHHHH--------
T ss_pred             ECChhhcc-----------cccccCCEEEEeCCCCCcccccCChhHhhcCC----HHHHHHHHHHHHHHHHH--------
Confidence            99998763           12457999999999999994   688888888    79999999999999999        


Q ss_pred             cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCcc---CCCchhhhcceEEeCCCCCCC
Q psy17793        219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAH---KDLEAEDQAVMQRFGPPLIPT  295 (397)
Q Consensus       219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~---~~~~~~~~~~~~r~~P~~~t~  295 (397)
                         +.++|||||+|+|+|||++++|||++|.++++++ +++++++.  +..+|+..   ..+.. ....+.|++|+    
T Consensus       232 ---~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~-~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~r~~P~----  300 (315)
T 1ixk_A          232 ---GLEVLKPGGILVYSTCSLEPEENEFVIQWALDNF-DVELLPLK--YGEPALTNPFGIELSE-EIKNARRLYPD----  300 (315)
T ss_dssp             ---HHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHS-SEEEECCC--SSEECCSSGGGCCCCG-GGGGSEEECTT----
T ss_pred             ---HHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcC-CCEEecCC--ccccCccccccccccc-ccCCEEEECCC----
Confidence               9999999999999999999999999999999997 58888775  22222221   11221 22457888885    


Q ss_pred             CCCCCCCcEEEEeeecc
Q psy17793        296 DRNTDTIGFFICKLRKK  312 (397)
Q Consensus       296 ~~~~~t~GFFiA~l~K~  312 (397)
                        .++|+|||+|+|+|.
T Consensus       301 --~~~~dGfF~A~l~k~  315 (315)
T 1ixk_A          301 --VHETSGFFIAKIRKL  315 (315)
T ss_dssp             --TSSSCSEEEEEEEEC
T ss_pred             --CCCcccEEEEEEEEC
Confidence              679999999999984

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.5e-38  Score=326.08  Aligned_cols=211  Identities=35%  Similarity=0.546  Sum_probs=185.9

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      +..|++++||.+|++++.++++++|++|||+|||||++|++++..+++.++|+|+|+++.+++.+++|++++|+.++++.
T Consensus       236 ~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~  315 (450)
T 2yxl_A          236 FNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPL  315 (450)
T ss_dssp             HHTTSEEECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             hhCceEEecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEE
Confidence            67999999999999999999999999999999999999999999987668999999999999999999999999999999


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      ++|+......         +..+.||+|++||||||+|.   +|+..+.++    ...+..+..+|.++|++        
T Consensus       316 ~~D~~~~~~~---------~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~----~~~~~~l~~~q~~iL~~--------  374 (450)
T 2yxl_A          316 VKDARKAPEI---------IGEEVADKVLLDAPCTSSGTIGKNPELRWRLR----EDKINEMSQLQRELLES--------  374 (450)
T ss_dssp             CSCTTCCSSS---------SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCC----TTSHHHHHHHHHHHHHH--------
T ss_pred             EcChhhcchh---------hccCCCCEEEEcCCCCCCeeeccChhhhhhCC----HHHHHHHHHHHHHHHHH--------
Confidence            9999876311         33367999999999999993   788888888    68889999999999999        


Q ss_pred             cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCCCC
Q psy17793        219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN  298 (397)
Q Consensus       219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~~~  298 (397)
                         +.++|||||+|+|+|||++++|||++|.++|+++++++++++.+.+     .  ..   ....+.|++|+      .
T Consensus       375 ---a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~~~~~~~~-----~--~~---~~~~~~~~~P~------~  435 (450)
T 2yxl_A          375 ---AARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLVPLKSPY-----D--PG---FLEGTMRAWPH------R  435 (450)
T ss_dssp             ---HHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCEECCCCSSS-----E--EC---SSTTCEEECHH------H
T ss_pred             ---HHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEeeccccc-----c--cc---cCCCeEEECCC------C
Confidence               9999999999999999999999999999999999999998876432     1  01   11235778885      5


Q ss_pred             CCCCcEEEEeeecc
Q psy17793        299 TDTIGFFICKLRKK  312 (397)
Q Consensus       299 ~~t~GFFiA~l~K~  312 (397)
                      ++++|||+|+|+|.
T Consensus       436 ~~~dGff~a~l~k~  449 (450)
T 2yxl_A          436 HSTIGFFYALLEKS  449 (450)
T ss_dssp             HSSCCEEEEEEECC
T ss_pred             CCCCceEEEEEEEC
Confidence            68999999999985

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=100.00  E-value=3.4e-37  Score=314.05  Aligned_cols=204  Identities=33%  Similarity=0.503  Sum_probs=178.3

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      +..|.+++||.+|++++.++++++|++|||+|||||++|+++++.+++ ++|+|+|+++.+++.+++|++++|+. ++++
T Consensus       223 ~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~-~~~~  300 (429)
T 1sqg_A          223 FEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMK-ATVK  300 (429)
T ss_dssp             GGGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCC-CEEE
T ss_pred             HhCCCeEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCC-eEEE
Confidence            579999999999999999999999999999999999999999998754 89999999999999999999999984 7889


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC---CCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G---~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      ..|+....         ..+..+.||+|++||||||+|   .+|+..+.++    ...+..+..+|.++|++        
T Consensus       301 ~~D~~~~~---------~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~----~~~~~~l~~~q~~~L~~--------  359 (429)
T 1sqg_A          301 QGDGRYPS---------QWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRR----DRDIPELAQLQSEILDA--------  359 (429)
T ss_dssp             ECCTTCTH---------HHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCC----TTHHHHHHHHHHHHHHH--------
T ss_pred             eCchhhch---------hhcccCCCCEEEEeCCCCcccccCCCcchhhcCC----HHHHHHHHHHHHHHHHH--------
Confidence            99988752         113346899999999999999   3788888888    68899999999999999        


Q ss_pred             cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCCCC
Q psy17793        219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRN  298 (397)
Q Consensus       219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~~~  298 (397)
                         +.++|||||+|+|+|||++++|||++|.+++++++++++++  +     +..        .....+++|+      .
T Consensus       360 ---a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~~~~~~~--~-----~~~--------~~~~~~~~P~------~  415 (429)
T 1sqg_A          360 ---IWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCE--T-----GTP--------EQPGKQNLPG------A  415 (429)
T ss_dssp             ---HGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEECS--S-----BCS--------SSBSEEECCC------T
T ss_pred             ---HHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCCCCEEeC--C-----CCC--------CCCeEEECCC------C
Confidence               99999999999999999999999999999999999999876  1     110        0123577784      6


Q ss_pred             CCCCcEEEEeeecc
Q psy17793        299 TDTIGFFICKLRKK  312 (397)
Q Consensus       299 ~~t~GFFiA~l~K~  312 (397)
                      ++++|||+|+|+|.
T Consensus       416 ~~~dGff~a~l~k~  429 (429)
T 1sqg_A          416 EEGDGFFYAKLIKK  429 (429)
T ss_dssp             TSCCSEEEEEEEC-
T ss_pred             CCCCceEEEEEEEC
Confidence            78999999999984

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=100.00  E-value=3.6e-37  Score=295.81  Aligned_cols=215  Identities=39%  Similarity=0.541  Sum_probs=171.2

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      +..|++++||.+|++++.++++++|++|||+|||||++|+++|+++.+.++|+|+|+|+.+++.+++|++++|+.+++++
T Consensus        60 ~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~  139 (274)
T 3ajd_A           60 YLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIII  139 (274)
T ss_dssp             HHTTSEEECCSGGGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             hhCCeEEEeCHHHHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEE
Confidence            67999999999999999999999999999999999999999999887678999999999999999999999999999999


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQ  221 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~  221 (397)
                      ..|+..+...       .....+.||+|++||||||+|..... ..|+    .+.+..+...|.++|++           
T Consensus       140 ~~D~~~~~~~-------~~~~~~~fD~Vl~d~Pcs~~g~~~~~-p~~~----~~~~~~~~~~~~~~l~~-----------  196 (274)
T 3ajd_A          140 NADMRKYKDY-------LLKNEIFFDKILLDAPCSGNIIKDKN-RNVS----EEDIKYCSLRQKELIDI-----------  196 (274)
T ss_dssp             ESCHHHHHHH-------HHHTTCCEEEEEEEECCC-----------------HHHHTGGGTCHHHHHHH-----------
T ss_pred             eCChHhcchh-------hhhccccCCEEEEcCCCCCCcccccC-CCCC----HHHHHHHHHHHHHHHHH-----------
Confidence            9998765210       00024689999999999999942111 1455    67888888899999999           


Q ss_pred             ccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCCCCCCC
Q psy17793        222 GIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDT  301 (397)
Q Consensus       222 a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~~~~~t  301 (397)
                      +.++|||||+|+|+|||++++|||++|+++|+++++++++++... ..+|+.....   ....+.|++|+      .  +
T Consensus       197 ~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~P~------~--~  264 (274)
T 3ajd_A          197 GIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIIIKAN-EFKGINIKEG---YIKGTLRVFPP------N--E  264 (274)
T ss_dssp             HHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCSSEEEECCCST-TCTTSCEEEC---SSTTCEEECTT------S--C
T ss_pred             HHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCCCcEEecCccc-cccCcccccc---cCCCeEEECCC------C--C
Confidence            999999999999999999999999999999999999999887521 1122211111   11356889885      2  2


Q ss_pred             CcEEEEeeecc
Q psy17793        302 IGFFICKLRKK  312 (397)
Q Consensus       302 ~GFFiA~l~K~  312 (397)
                      + ||+|+|+|.
T Consensus       265 ~-ff~a~l~k~  274 (274)
T 3ajd_A          265 P-FFIAKLRKI  274 (274)
T ss_dssp             C-EEEEEEEEC
T ss_pred             C-EEEEEEEEC
Confidence            3 999999984

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.82  E-value=9.2e-20  Score=183.59  Aligned_cols=193  Identities=17%  Similarity=0.197  Sum_probs=143.9

Q ss_pred             cccccccccccccccccccceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHH
Q psy17793         26 ARQRPSLSIYCYALDILFRGVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIA  104 (397)
Q Consensus        26 ~~~~~~~~i~~~~~~~~~~gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA  104 (397)
                      ++......+..+..   +.-+.+++.+..+.++... +++|.|+.|+.+..++...+  ++|++|||+|||+|++|+++|
T Consensus       159 ~g~~~~~~~l~G~~---~~~~~v~E~g~~f~vd~~~~~~tG~f~dqr~~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a  233 (393)
T 4dmg_A          159 EGLPERVGVVYGEV---PEVLEVEEDGLRFPIPLALAQKTGYYLDQRENRRLFEAMV--RPGERVLDVYSYVGGFALRAA  233 (393)
T ss_dssp             TTCCCCCEEEEECC---CSEEEEEETTEEEEEETTTCCTTSSCGGGHHHHHHHHTTC--CTTCEEEEESCTTTHHHHHHH
T ss_pred             cCCCcccceEecCC---CCcEEEEECCEEEEEechhccccCcCCCHHHHHHHHHHHh--cCCCeEEEcccchhHHHHHHH
Confidence            44444455444432   3557778887777665444 88999999999988887664  468999999999999999998


Q ss_pred             HHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCccc
Q psy17793        105 LLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMF  184 (397)
Q Consensus       105 ~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~  184 (397)
                      ..  + ..|+|+|+|+.+++.+++|++.+|+.+ ++.++|+..+...         . .+.||+|++||||...+     
T Consensus       234 ~~--g-a~V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l~~---------~-~~~fD~Ii~dpP~f~~~-----  294 (393)
T 4dmg_A          234 RK--G-AYALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTLRG---------L-EGPFHHVLLDPPTLVKR-----  294 (393)
T ss_dssp             HT--T-CEEEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHHHT---------C-CCCEEEEEECCCCCCSS-----
T ss_pred             Hc--C-CeEEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHHHH---------h-cCCCCEEEECCCcCCCC-----
Confidence            84  3 449999999999999999999999874 5668888765311         2 33499999999985422     


Q ss_pred             ccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccH--HHHHHHHHH-CCCcEEE
Q psy17793        185 YNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENE--AVIAWILHR-HPEVELV  261 (397)
Q Consensus       185 ~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE--~vV~~~L~~-~~~~~l~  261 (397)
                               ...+......+.+++..           +.++|||||.|+|+|||.+..+++  +.+...+.+ ...++++
T Consensus       295 ---------~~~~~~~~~~~~~ll~~-----------a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~  354 (393)
T 4dmg_A          295 ---------PEELPAMKRHLVDLVRE-----------ALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVH  354 (393)
T ss_dssp             ---------GGGHHHHHHHHHHHHHH-----------HHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             ---------HHHHHHHHHHHHHHHHH-----------HHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEE
Confidence                     23344444556888999           999999999999999999887776  566666554 3346555


Q ss_pred             e
Q psy17793        262 Q  262 (397)
Q Consensus       262 ~  262 (397)
                      .
T Consensus       355 ~  355 (393)
T 4dmg_A          355 R  355 (393)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.76  E-value=4.9e-18  Score=170.10  Aligned_cols=180  Identities=23%  Similarity=0.281  Sum_probs=134.7

Q ss_pred             cceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHH
Q psy17793         44 RGVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPR  122 (397)
Q Consensus        44 ~gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~r  122 (397)
                      +.+.+++.+..+.+.... +.+|+|+.|.....+++.+    ++++|||+|||+|+++.++|..   ..+|+|+|+|+.+
T Consensus       171 ~~~~~~e~g~~f~i~~~~~~~~g~f~~~~~~~~~~~~~----~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~  243 (382)
T 1wxx_A          171 ERVQVQEGRVRYLVDLRAGQKTGAYLDQRENRLYMERF----RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEA  243 (382)
T ss_dssp             SEEEEEETTEEEEEECSTTSCCCCCGGGHHHHHHGGGC----CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHH
T ss_pred             ceEEEEECCEEEEEEchhcccCccccchHHHHHHHHhc----CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHH
Confidence            445566665555554433 6789888888776665544    6889999999999999999986   4789999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHH
Q psy17793        123 VTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN  202 (397)
Q Consensus       123 l~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~  202 (397)
                      ++.+++|++.+|+.+++++++|+......       ......+||+|++|||+.+...              ..+.....
T Consensus       244 ~~~a~~n~~~n~~~~~~~~~~d~~~~~~~-------~~~~~~~fD~Ii~dpP~~~~~~--------------~~~~~~~~  302 (382)
T 1wxx_A          244 LRRAEENARLNGLGNVRVLEANAFDLLRR-------LEKEGERFDLVVLDPPAFAKGK--------------KDVERAYR  302 (382)
T ss_dssp             HHHHHHHHHHTTCTTEEEEESCHHHHHHH-------HHHTTCCEEEEEECCCCSCCST--------------TSHHHHHH
T ss_pred             HHHHHHHHHHcCCCCceEEECCHHHHHHH-------HHhcCCCeeEEEECCCCCCCCh--------------hHHHHHHH
Confidence            99999999999998899999999775311       0011468999999999766431              22233344


Q ss_pred             HHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcccc--HHHHHHHHHHC-CCcEEEe
Q psy17793        203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN--EAVIAWILHRH-PEVELVQ  262 (397)
Q Consensus       203 ~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEn--E~vV~~~L~~~-~~~~l~~  262 (397)
                      .+.+++..           +.++|+|||.|++++|+.+..++  ++.+...+.+. ..++++.
T Consensus       303 ~~~~~l~~-----------~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~  354 (382)
T 1wxx_A          303 AYKEVNLR-----------AIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE  354 (382)
T ss_dssp             HHHHHHHH-----------HHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHH-----------HHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            45788888           99999999999999999877664  56666555444 3566664

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.74  E-value=1.9e-17  Score=155.32  Aligned_cols=134  Identities=19%  Similarity=0.191  Sum_probs=103.5

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      .+++|++|||+|||||++|.++|.++++.|+|+|+|+++.+++.+.+.+++.  .||.++.+|++.....        ..
T Consensus        73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~--------~~  142 (232)
T 3id6_C           73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSY--------KS  142 (232)
T ss_dssp             SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGT--------TT
T ss_pred             CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhh--------hc
Confidence            3789999999999999999999999988899999999999988777666553  5899999999764210        01


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHH-HHhhhhccccccccccccCCcEEEEE---ec
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQ-AVYRFVSLFDWQGIPLLKKDGILVYC---TC  237 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~-~~~~f~~~~~~~a~~lLkpgG~lvys---TC  237 (397)
                      ..++||+|++|.+-                          ..|.++|. .           +.++|||||+|+++   +|
T Consensus       143 ~~~~~D~I~~d~a~--------------------------~~~~~il~~~-----------~~~~LkpGG~lvisik~~~  185 (232)
T 3id6_C          143 VVENVDVLYVDIAQ--------------------------PDQTDIAIYN-----------AKFFLKVNGDMLLVIKARS  185 (232)
T ss_dssp             TCCCEEEEEECCCC--------------------------TTHHHHHHHH-----------HHHHEEEEEEEEEEEC---
T ss_pred             cccceEEEEecCCC--------------------------hhHHHHHHHH-----------HHHhCCCCeEEEEEEccCC
Confidence            23689999999761                          01233333 3           55589999999977   89


Q ss_pred             ---CCCccccHHHHHHHHHHCCCcEEEec
Q psy17793        238 ---SLSVEENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       238 ---S~~~eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                         ++.++||.+.+.++|+++ +|+++..
T Consensus       186 ~d~t~~~~e~~~~~~~~L~~~-gf~~~~~  213 (232)
T 3id6_C          186 IDVTKDPKEIYKTEVEKLENS-NFETIQI  213 (232)
T ss_dssp             ----CCSSSSTTHHHHHHHHT-TEEEEEE
T ss_pred             cccCCCHHHHHHHHHHHHHHC-CCEEEEE
Confidence               899999999999999988 4887764

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.73  E-value=2.9e-17  Score=165.03  Aligned_cols=176  Identities=22%  Similarity=0.263  Sum_probs=129.8

Q ss_pred             cceEEEEccccccCCCcccCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHH
Q psy17793         44 RGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRV  123 (397)
Q Consensus        44 ~gi~v~~~~~~~~~p~~~~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl  123 (397)
                      +.+.+.+.+..+.++.-.+++|+|+.|.....++..++  +++++|||+|||+|+++.++|..  +..+|+|+|+|+.++
T Consensus       178 ~~~~~~e~g~~~~~~~~~~~tg~f~~~~~~~~~~~~~~--~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l  253 (396)
T 2as0_A          178 YRTIIQEGRAKFIVDMRGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAI  253 (396)
T ss_dssp             CEEEEEETTEEEEEESSSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHH
T ss_pred             ceEEEEeCCEEEEEeccccccCccCCHHHHHHHHHHHh--hCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHH
Confidence            34555555555555442267788877777777766553  47899999999999999999884  456999999999999


Q ss_pred             HHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHH
Q psy17793        124 TKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN  202 (397)
Q Consensus       124 ~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~  202 (397)
                      +.+++|++.+|++ +++++++|+......       .....++||+|++|||+.+..              ...+.....
T Consensus       254 ~~a~~n~~~n~~~~~v~~~~~d~~~~~~~-------~~~~~~~fD~Vi~dpP~~~~~--------------~~~~~~~~~  312 (396)
T 2as0_A          254 ETAKENAKLNGVEDRMKFIVGSAFEEMEK-------LQKKGEKFDIVVLDPPAFVQH--------------EKDLKAGLR  312 (396)
T ss_dssp             HHHHHHHHHTTCGGGEEEEESCHHHHHHH-------HHHTTCCEEEEEECCCCSCSS--------------GGGHHHHHH
T ss_pred             HHHHHHHHHcCCCccceEEECCHHHHHHH-------HHhhCCCCCEEEECCCCCCCC--------------HHHHHHHHH
Confidence            9999999999997 799999998765311       001246899999999975532              122333334


Q ss_pred             HHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccc--cHHHHHHHHHHC
Q psy17793        203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE--NEAVIAWILHRH  255 (397)
Q Consensus       203 ~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eE--nE~vV~~~L~~~  255 (397)
                      .+.+++..           +.++|||||.|+|++|+.+..+  .++.+.......
T Consensus       313 ~~~~~l~~-----------~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~  356 (396)
T 2as0_A          313 AYFNVNFA-----------GLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKA  356 (396)
T ss_dssp             HHHHHHHH-----------HHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHH-----------HHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            45778888           9999999999999999976544  456666555554

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.72  E-value=1.5e-17  Score=167.27  Aligned_cols=181  Identities=16%  Similarity=0.157  Sum_probs=133.6

Q ss_pred             ceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHH
Q psy17793         45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRV  123 (397)
Q Consensus        45 gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl  123 (397)
                      .+.+++.+..+.++... +++|+|..|.....++..+   .++++|||+|||+|++++++|..  +..+|+|+|+|+.++
T Consensus       182 ~~~~~~~g~~f~v~~~~~~~tgff~~~~~~~~~l~~~---~~~~~VLDl~cG~G~~sl~la~~--g~~~V~~vD~s~~al  256 (396)
T 3c0k_A          182 LLPIEEHGMKLLVDIQHGHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEAL  256 (396)
T ss_dssp             SEEEEETTEEEEECTTTSSTTSSCGGGHHHHHHHHHH---CTTCEEEEESCTTCSHHHHHHHT--TCSEEEEEESCHHHH
T ss_pred             eEEEEECCEEEEEeccccccCCcCcCHHHHHHHHHHh---hCCCeEEEeeccCCHHHHHHHHC--CCCEEEEEECCHHHH
Confidence            46666666656555443 7789998888887777665   57889999999999999999884  356999999999999


Q ss_pred             HHHHHHHHHhCC-C-cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHH
Q psy17793        124 TKLEETIKKLQL-S-SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA  201 (397)
Q Consensus       124 ~~l~~n~~~~g~-~-~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~  201 (397)
                      +.+++|++.+|+ + +++++.+|+......       ......+||+|++|||+.+.... .. ..            ..
T Consensus       257 ~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~-------~~~~~~~fD~Ii~dpP~~~~~~~-~~-~~------------~~  315 (396)
T 3c0k_A          257 DIARQNVELNKLDLSKAEFVRDDVFKLLRT-------YRDRGEKFDVIVMDPPKFVENKS-QL-MG------------AC  315 (396)
T ss_dssp             HHHHHHHHHTTCCGGGEEEEESCHHHHHHH-------HHHTTCCEEEEEECCSSTTTCSS-SS-SC------------CC
T ss_pred             HHHHHHHHHcCCCccceEEEECCHHHHHHH-------HHhcCCCCCEEEECCCCCCCChh-HH-HH------------HH
Confidence            999999999999 6 899999999776311       00113589999999998664321 00 00            01


Q ss_pred             HHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc--ccHHHHHHHHH-HCCCcEEEe
Q psy17793        202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE--ENEAVIAWILH-RHPEVELVQ  262 (397)
Q Consensus       202 ~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e--EnE~vV~~~L~-~~~~~~l~~  262 (397)
                      ..+.+++..           +.++|+|||++++++|+.+..  ++++.+...+. ....++++.
T Consensus       316 ~~~~~~l~~-----------~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~  368 (396)
T 3c0k_A          316 RGYKDINML-----------AIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE  368 (396)
T ss_dssp             THHHHHHHH-----------HHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHH-----------HHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            123567777           999999999999999997655  66777775554 444566654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.72  E-value=2.8e-17  Score=176.69  Aligned_cols=179  Identities=16%  Similarity=0.152  Sum_probs=134.2

Q ss_pred             ccceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHH
Q psy17793         43 FRGVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP  121 (397)
Q Consensus        43 ~~gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~  121 (397)
                      +.-+.+.+.+..+.++... +++|+|+.|.....++....   +|.+|||+|||+|++++++|.  .+..+|+++|+|+.
T Consensus       499 ~~~~~v~E~g~~~~v~~~~~~~tG~f~d~r~~r~~l~~~~---~g~~VLDlg~GtG~~sl~aa~--~ga~~V~aVD~s~~  573 (703)
T 3v97_A          499 GEFLEVTEYNAHLWVNLTDYLDTGLFLDHRIARRMLGQMS---KGKDFLNLFSYTGSATVHAGL--GGARSTTTVDMSRT  573 (703)
T ss_dssp             SCCEEEEETTEEEEECSSSSSSCSCCGGGHHHHHHHHHHC---TTCEEEEESCTTCHHHHHHHH--TTCSEEEEEESCHH
T ss_pred             CceEEEEECCEEEEEeccccccCCCcccHHHHHHHHHHhc---CCCcEEEeeechhHHHHHHHH--CCCCEEEEEeCCHH
Confidence            3456677777766665444 78999999999888877654   588999999999999998887  35668999999999


Q ss_pred             HHHHHHHHHHHhCCC--cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHH
Q psy17793        122 RVTKLEETIKKLQLS--SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS  199 (397)
Q Consensus       122 rl~~l~~n~~~~g~~--~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~  199 (397)
                      +++.+++|++.+|+.  +++++++|+..+..          ...++||+|++||||.+.+....            ....
T Consensus       574 al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~----------~~~~~fD~Ii~DPP~f~~~~~~~------------~~~~  631 (703)
T 3v97_A          574 YLEWAERNLRLNGLTGRAHRLIQADCLAWLR----------EANEQFDLIFIDPPTFSNSKRME------------DAFD  631 (703)
T ss_dssp             HHHHHHHHHHHTTCCSTTEEEEESCHHHHHH----------HCCCCEEEEEECCCSBC-------------------CCB
T ss_pred             HHHHHHHHHHHcCCCccceEEEecCHHHHHH----------hcCCCccEEEECCccccCCccch------------hHHH
Confidence            999999999999997  69999999987531          23468999999999876443210            1111


Q ss_pred             HHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecC
Q psy17793        200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL  264 (397)
Q Consensus       200 l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~  264 (397)
                      ....+.+++..           +.++|||||+|++++|+-....+++.    ++++ +++...+.
T Consensus       632 ~~~~~~~ll~~-----------a~~~LkpgG~L~~s~~~~~~~~~~~~----l~~~-g~~~~~i~  680 (703)
T 3v97_A          632 VQRDHLALMKD-----------LKRLLRAGGTIMFSNNKRGFRMDLDG----LAKL-GLKAQEIT  680 (703)
T ss_dssp             HHHHHHHHHHH-----------HHHHEEEEEEEEEEECCTTCCCCHHH----HHHT-TEEEEECT
T ss_pred             HHHHHHHHHHH-----------HHHhcCCCcEEEEEECCcccccCHHH----HHHc-CCceeeee
Confidence            22334778888           99999999999999999666666543    3444 46655543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.70  E-value=1.9e-16  Score=149.65  Aligned_cols=166  Identities=15%  Similarity=0.199  Sum_probs=116.3

Q ss_pred             CCcEEEechh-------HHHHHhccCCC-CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q psy17793         64 SSMGILQNLP-------SILAGHYLDVQ-PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL  135 (397)
Q Consensus        64 ~g~~~~Qd~~-------S~l~~~~L~~~-~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~  135 (397)
                      .++.++|+..       +.+++.++.+. ++.+|||+|||+|..+..+|...  .++|+|+|+++.+++.+++|++.+++
T Consensus        20 ~~~~i~q~~~~~~~~~d~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~--~~~v~gvDi~~~~~~~a~~n~~~~~~   97 (259)
T 3lpm_A           20 ENLRIIQSPSVFSFSIDAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQERLADMAKRSVAYNQL   97 (259)
T ss_dssp             TTEEEEEBTTTBCCCHHHHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTC--CCEEEEECCSHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEeCCCCccCcHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhc--CCcEEEEECCHHHHHHHHHHHHHCCC
Confidence            4556667766       78888888888 89999999999999999998863  34999999999999999999999998


Q ss_pred             C-cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCC---CC-CcccccccCccchHHHHHHHHHHHHHHHHH
Q psy17793        136 S-SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGF---GQ-RPMFYNANSFLNLDKKIKSYANIQKKLLQA  210 (397)
Q Consensus       136 ~-~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~---G~-~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~  210 (397)
                      . +++++.+|+..+..         .+..++||+|++||||...   |. .++.....      ........ ...+++.
T Consensus        98 ~~~v~~~~~D~~~~~~---------~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~------a~~~~~~~-~~~~l~~  161 (259)
T 3lpm_A           98 EDQIEIIEYDLKKITD---------LIPKERADIVTCNPPYFATPDTSLKNTNEHFRI------ARHEVMCT-LEDTIRV  161 (259)
T ss_dssp             TTTEEEECSCGGGGGG---------TSCTTCEEEEEECCCC-----------------------------HH-HHHHHHH
T ss_pred             cccEEEEECcHHHhhh---------hhccCCccEEEECCCCCCCccccCCCCchHHHh------hhccccCC-HHHHHHH
Confidence            7 59999999987631         1335789999999999765   32 22111111      11111111 2567888


Q ss_pred             HhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEec
Q psy17793        211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       211 ~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                                 +.++|||||++++.    .+.+....+...++++ ++....+
T Consensus       162 -----------~~~~LkpgG~l~~~----~~~~~~~~~~~~l~~~-~~~~~~~  198 (259)
T 3lpm_A          162 -----------AASLLKQGGKANFV----HRPERLLDIIDIMRKY-RLEPKRI  198 (259)
T ss_dssp             -----------HHHHEEEEEEEEEE----ECTTTHHHHHHHHHHT-TEEEEEE
T ss_pred             -----------HHHHccCCcEEEEE----EcHHHHHHHHHHHHHC-CCceEEE
Confidence                       99999999999995    2334444566667776 4555443

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.69  E-value=5.3e-17  Score=162.95  Aligned_cols=175  Identities=14%  Similarity=0.101  Sum_probs=126.4

Q ss_pred             ceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHH
Q psy17793         45 GVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRV  123 (397)
Q Consensus        45 gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl  123 (397)
                      -+.+.+.+..+.++... +++|.|..|.....+....+  .+|++|||+|||+|++++++|..  +..+|+++|+|+.++
T Consensus       173 ~~~v~e~g~~f~v~~~~~~~t~ff~~~~~~~~~~~~~~--~~~~~VLDl~cGtG~~sl~la~~--ga~~V~~vD~s~~al  248 (385)
T 2b78_A          173 QFLILENGISYNVFLNDGLMTGIFLDQRQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSR  248 (385)
T ss_dssp             SEEEEETTEEEEECSSSSSCCSSCGGGHHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHH
T ss_pred             eEEEEECCEEEEEeccccccCCcCCcHHHHHHHHHHHh--cCCCeEEEEeeccCHHHHHHHHC--CCCEEEEEECCHHHH
Confidence            45556655555554443 67888877777777776665  57889999999999999999874  345899999999999


Q ss_pred             HHHHHHHHHhCCC--cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHH
Q psy17793        124 TKLEETIKKLQLS--SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA  201 (397)
Q Consensus       124 ~~l~~n~~~~g~~--~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~  201 (397)
                      +.+++|++.+|++  +++++++|+......       ......+||+|++|||+.+.+..      ..    ...+..  
T Consensus       249 ~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~-------~~~~~~~fD~Ii~DPP~~~~~~~------~~----~~~~~~--  309 (385)
T 2b78_A          249 ALSLAHFEANHLDMANHQLVVMDVFDYFKY-------ARRHHLTYDIIIIDPPSFARNKK------EV----FSVSKD--  309 (385)
T ss_dssp             HHHHHHHHHTTCCCTTEEEEESCHHHHHHH-------HHHTTCCEEEEEECCCCC-----------CC----CCHHHH--
T ss_pred             HHHHHHHHHcCCCccceEEEECCHHHHHHH-------HHHhCCCccEEEECCCCCCCChh------hH----HHHHHH--
Confidence            9999999999997  899999999765311       01123579999999998653210      00    122222  


Q ss_pred             HHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc--cccHHHHHHHHHHC
Q psy17793        202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV--EENEAVIAWILHRH  255 (397)
Q Consensus       202 ~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~--eEnE~vV~~~L~~~  255 (397)
                        ..+++..           +.++|+|||.|++++|+-..  ++..+.+...+.+.
T Consensus       310 --~~~ll~~-----------~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~  352 (385)
T 2b78_A          310 --YHKLIRQ-----------GLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQ  352 (385)
T ss_dssp             --HHHHHHH-----------HHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTC
T ss_pred             --HHHHHHH-----------HHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHc
Confidence              2667888           99999999999999998654  44555666666555

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.67  E-value=2.2e-16  Score=155.54  Aligned_cols=163  Identities=17%  Similarity=0.086  Sum_probs=119.4

Q ss_pred             cceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccC-CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHH
Q psy17793         44 RGVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLD-VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP  121 (397)
Q Consensus        44 ~gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~-~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~  121 (397)
                      +.+.+++.+..+.+.... +++|++..|.....++...+. ..++.+|||+|||+|+.+..+|..  + .+|+++|+|+.
T Consensus       110 ~~~~i~e~g~~f~v~~~~~~~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~--g-a~V~~VD~s~~  186 (332)
T 2igt_A          110 ETWPLSLLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA--G-AEVTHVDASKK  186 (332)
T ss_dssp             SEEEEEETTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT--T-CEEEEECSCHH
T ss_pred             CceEEEECCEEEEEecCccccceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHc--C-CEEEEEECCHH
Confidence            566677766656554444 678888888887766666664 456789999999999999999883  3 49999999999


Q ss_pred             HHHHHHHHHHHhCCCc--EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHH
Q psy17793        122 RVTKLEETIKKLQLSS--IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS  199 (397)
Q Consensus       122 rl~~l~~n~~~~g~~~--v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~  199 (397)
                      +++.+++|++.+++.+  ++++++|+.++...       .....++||+|++||||.+.+.....   +      ...  
T Consensus       187 al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~-------~~~~~~~fD~Ii~dPP~~~~~~~~~~---~------~~~--  248 (332)
T 2igt_A          187 AIGWAKENQVLAGLEQAPIRWICEDAMKFIQR-------EERRGSTYDIILTDPPKFGRGTHGEV---W------QLF--  248 (332)
T ss_dssp             HHHHHHHHHHHHTCTTSCEEEECSCHHHHHHH-------HHHHTCCBSEEEECCCSEEECTTCCE---E------EHH--
T ss_pred             HHHHHHHHHHHcCCCccceEEEECcHHHHHHH-------HHhcCCCceEEEECCccccCCchHHH---H------HHH--
Confidence            9999999999999875  99999999775310       00114689999999998775532111   1      111  


Q ss_pred             HHHHHHHHHHHHhhhhccccccccccccCCcE-EEEEecCCC
Q psy17793        200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI-LVYCTCSLS  240 (397)
Q Consensus       200 l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~-lvysTCS~~  240 (397)
                        ....+++..           +.++|||||. ++.++|+..
T Consensus       249 --~~~~~ll~~-----------~~~~LkpgG~lli~~~~~~~  277 (332)
T 2igt_A          249 --DHLPLMLDI-----------CREILSPKALGLVLTAYSIR  277 (332)
T ss_dssp             --HHHHHHHHH-----------HHHTBCTTCCEEEEEECCTT
T ss_pred             --HHHHHHHHH-----------HHHhcCcCcEEEEEECCCCC
Confidence              122677888           9999999999 455566644

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.66  E-value=1.2e-15  Score=140.48  Aligned_cols=151  Identities=13%  Similarity=0.125  Sum_probs=111.8

Q ss_pred             EEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccc
Q psy17793         68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDST  146 (397)
Q Consensus        68 ~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~  146 (397)
                      .+++....++..++...++.+|||+|||+|..+.++|..+...++|+++|+++.+++.++++++++|+. +|+++.+|+.
T Consensus        41 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  120 (221)
T 3u81_A           41 NVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQ  120 (221)
T ss_dssp             GCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             ccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHH
Confidence            356667777777777778899999999999999999997766789999999999999999999999986 4999999987


Q ss_pred             cccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q psy17793        147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLL  226 (397)
Q Consensus       147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lL  226 (397)
                      ......     ...+..++||+|++|+++.                   ....    ..+++..           . ++|
T Consensus       121 ~~l~~~-----~~~~~~~~fD~V~~d~~~~-------------------~~~~----~~~~~~~-----------~-~~L  160 (221)
T 3u81_A          121 DLIPQL-----KKKYDVDTLDMVFLDHWKD-------------------RYLP----DTLLLEK-----------C-GLL  160 (221)
T ss_dssp             HHGGGT-----TTTSCCCCCSEEEECSCGG-------------------GHHH----HHHHHHH-----------T-TCC
T ss_pred             HHHHHH-----HHhcCCCceEEEEEcCCcc-------------------cchH----HHHHHHh-----------c-ccc
Confidence            643110     0001126899999998621                   1111    1345665           6 999


Q ss_pred             cCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEE
Q psy17793        227 KKDGILVYCTCSLSVEENEAVIAWILHRHPEVELV  261 (397)
Q Consensus       227 kpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~  261 (397)
                      ||||+|++.+|...  ..+ ....++++++.++..
T Consensus       161 kpgG~lv~~~~~~~--~~~-~~~~~l~~~~~~~~~  192 (221)
T 3u81_A          161 RKGTVLLADNVIVP--GTP-DFLAYVRGSSSFECT  192 (221)
T ss_dssp             CTTCEEEESCCCCC--CCH-HHHHHHHHCTTEEEE
T ss_pred             CCCeEEEEeCCCCc--chH-HHHHHHhhCCCceEE
Confidence            99999999988743  223 445566777766544

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.64  E-value=2.7e-15  Score=141.20  Aligned_cols=126  Identities=12%  Similarity=0.162  Sum_probs=100.8

Q ss_pred             EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEccccc
Q psy17793         69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTR  147 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~  147 (397)
                      ++.....++..++...++.+|||+|||+|..+..+|..+++.++|+++|+|+.+++.+++++++.|+. +|++..+|+..
T Consensus        47 ~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  126 (248)
T 3tfw_A           47 VAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQ  126 (248)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            34566666666666678899999999999999999998765789999999999999999999999997 69999999876


Q ss_pred             ccccchhhHHHhhh-cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q psy17793        148 INTSSQIDIERMKL-QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLL  226 (397)
Q Consensus       148 ~~~~~~~d~~~~~~-~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lL  226 (397)
                      ....         . ..++||+|++|+++.                   ..       ..+++.           +.++|
T Consensus       127 ~l~~---------~~~~~~fD~V~~d~~~~-------------------~~-------~~~l~~-----------~~~~L  160 (248)
T 3tfw_A          127 SLES---------LGECPAFDLIFIDADKP-------------------NN-------PHYLRW-----------ALRYS  160 (248)
T ss_dssp             HHHT---------CCSCCCCSEEEECSCGG-------------------GH-------HHHHHH-----------HHHTC
T ss_pred             HHHh---------cCCCCCeEEEEECCchH-------------------HH-------HHHHHH-----------HHHhc
Confidence            4311         1 124899999998721                   11       235666           88999


Q ss_pred             cCCcEEEEEecCCC
Q psy17793        227 KKDGILVYCTCSLS  240 (397)
Q Consensus       227 kpgG~lvysTCS~~  240 (397)
                      ||||+|++.++...
T Consensus       161 kpGG~lv~~~~~~~  174 (248)
T 3tfw_A          161 RPGTLIIGDNVVRD  174 (248)
T ss_dssp             CTTCEEEEECCSGG
T ss_pred             CCCeEEEEeCCCcC
Confidence            99999999887654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.63  E-value=4.4e-15  Score=141.53  Aligned_cols=163  Identities=13%  Similarity=0.077  Sum_probs=114.9

Q ss_pred             CCcEEEechhHHHHHhccCC--CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         64 SSMGILQNLPSILAGHYLDV--QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L~~--~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      .+.++.+..+..++..+++.  .++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.+++|++++|+.++++.
T Consensus        86 ~~~~ipr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~  164 (276)
T 2b3t_A           86 PATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHIL  164 (276)
T ss_dssp             TTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             CCCcccCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEE
Confidence            44444455555555544432  567899999999999999999875 467999999999999999999999999899999


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      .+|+....            ..++||+|++||||.+.+.   .++.........+......+. ..+++++.        
T Consensus       165 ~~d~~~~~------------~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~-~~~~~l~~--------  223 (276)
T 2b3t_A          165 QSDWFSAL------------AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMA-DIVHIIEQ--------  223 (276)
T ss_dssp             CCSTTGGG------------TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTH-HHHHHHHH--------
T ss_pred             Ecchhhhc------------ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHH-HHHHHHHH--------
Confidence            99987642            2468999999999988753   111111111000001111222 22778888        


Q ss_pred             cccccccccCCcEEEEEecCCCccccHHHHHHHHHHC
Q psy17793        219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRH  255 (397)
Q Consensus       219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~  255 (397)
                         +.++|||||.+++..+.    .+.+.+..++++.
T Consensus       224 ---~~~~LkpgG~l~~~~~~----~~~~~~~~~l~~~  253 (276)
T 2b3t_A          224 ---SRNALVSGGFLLLEHGW----QQGEAVRQAFILA  253 (276)
T ss_dssp             ---HGGGEEEEEEEEEECCS----SCHHHHHHHHHHT
T ss_pred             ---HHHhcCCCCEEEEEECc----hHHHHHHHHHHHC
Confidence               99999999999997543    3455667777765

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.61  E-value=6e-16  Score=154.99  Aligned_cols=136  Identities=18%  Similarity=0.108  Sum_probs=100.9

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh---------------C
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL---------------Q  134 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~---------------g  134 (397)
                      |.....+...++...++.+|||+|||+|.+++.+|..++ ..+|+++|+|+.+++.+++|++++               |
T Consensus        32 ~~~nr~l~~~~l~~~~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~g  110 (378)
T 2dul_A           32 MALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKG  110 (378)
T ss_dssp             GHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEES
T ss_pred             hHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccC
Confidence            444444433333223688999999999999999999864 467999999999999999999999               8


Q ss_pred             CCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhh
Q psy17793        135 LSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRF  214 (397)
Q Consensus       135 ~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f  214 (397)
                      +.+++++++|+..+..          ...+.||+|++||||+.                           ..+|+.    
T Consensus       111 l~~i~v~~~Da~~~~~----------~~~~~fD~I~lDP~~~~---------------------------~~~l~~----  149 (378)
T 2dul_A          111 EKTIVINHDDANRLMA----------ERHRYFHFIDLDPFGSP---------------------------MEFLDT----  149 (378)
T ss_dssp             SSEEEEEESCHHHHHH----------HSTTCEEEEEECCSSCC---------------------------HHHHHH----
T ss_pred             CCceEEEcCcHHHHHH----------hccCCCCEEEeCCCCCH---------------------------HHHHHH----
Confidence            8789999999977631          11357999999999753                           345666    


Q ss_pred             hccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHC
Q psy17793        215 VSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRH  255 (397)
Q Consensus       215 ~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~  255 (397)
                             +.+.||+|| ++|.||+-....+.......+.++
T Consensus       150 -------a~~~lk~gG-~l~vt~td~~~l~~~~~~~~~~~y  182 (378)
T 2dul_A          150 -------ALRSAKRRG-ILGVTATDGAPLCGAHPRACLRKY  182 (378)
T ss_dssp             -------HHHHEEEEE-EEEEEECCHHHHTTSSHHHHHHHH
T ss_pred             -------HHHhcCCCC-EEEEEeecchhhccccHHHHHHHc
Confidence                   888999999 678899754432222344455555

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.60  E-value=7.8e-16  Score=154.69  Aligned_cols=123  Identities=16%  Similarity=0.105  Sum_probs=95.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEEcccccccc-cchhhHHHhh
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS--IQTHVYDSTRINT-SSQIDIERMK  160 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~--v~~~~~D~~~~~~-~~~~d~~~~~  160 (397)
                      ++|++|||+|||+|++++.+|..+.+.++|+++|+++.+++.+++|++.+|+++  ++++++|+..+.. .         
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~---------  121 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE---------  121 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC---------
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh---------
Confidence            578999999999999999999976545799999999999999999999999987  9999999987632 1         


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS  240 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~  240 (397)
                       ..+.||+|++||+|+.                           ..+++.           +.++|++|| ++|+||+-.
T Consensus       122 -~~~~fD~V~lDP~g~~---------------------------~~~l~~-----------a~~~Lk~gG-ll~~t~t~~  161 (392)
T 3axs_A          122 -WGFGFDYVDLDPFGTP---------------------------VPFIES-----------VALSMKRGG-ILSLTATDT  161 (392)
T ss_dssp             -CSSCEEEEEECCSSCC---------------------------HHHHHH-----------HHHHEEEEE-EEEEEECCH
T ss_pred             -hCCCCcEEEECCCcCH---------------------------HHHHHH-----------HHHHhCCCC-EEEEEecch
Confidence             1357999999997431                           235566           888899999 778899754


Q ss_pred             ccccHHHHHHHHHHC
Q psy17793        241 VEENEAVIAWILHRH  255 (397)
Q Consensus       241 ~eEnE~vV~~~L~~~  255 (397)
                      .......+...++++
T Consensus       162 ~~l~g~~~~~~~rkY  176 (392)
T 3axs_A          162 APLSGTYPKTCMRRY  176 (392)
T ss_dssp             HHHTTSSHHHHHHHH
T ss_pred             hhhccccHHHHHHHh
Confidence            432222334455555

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.60  E-value=1.1e-14  Score=134.18  Aligned_cols=146  Identities=12%  Similarity=0.051  Sum_probs=102.9

Q ss_pred             CCCCCeEEEEcCC-CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAA-PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcag-pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      .+++.+|||+||| +|..+..++...  ..+|+|+|+|+.+++.+++|++.+++ +++++.+|+..+.          .+
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~----------~~  119 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIK----------GV  119 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSST----------TT
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhh----------hc
Confidence            5688999999999 999999999875  57999999999999999999999998 8999999975442          13


Q ss_pred             cccCccEEEEcCCCCCCCCC----cccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        162 QKESFDRILLDAPCSGFGQR----PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~----p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                      ..++||+|++|||+...+..    |.......    ..   ... .-.++++.           +.++|||||++++.+.
T Consensus       120 ~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~----~~---~~~-~~~~~l~~-----------~~~~LkpgG~l~~~~~  180 (230)
T 3evz_A          120 VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGG----KY---GEE-FSVKLLEE-----------AFDHLNPGGKVALYLP  180 (230)
T ss_dssp             CCSCEEEEEECCCCC---------------CC----SS---SCH-HHHHHHHH-----------HGGGEEEEEEEEEEEE
T ss_pred             ccCceeEEEECCCCcCCccccccChhhhhccC----cc---chH-HHHHHHHH-----------HHHHhCCCeEEEEEec
Confidence            44789999999998765421    10000000    00   011 11567888           9999999999998754


Q ss_pred             CCCccccHHHHHHHHHHCCCcEEEec
Q psy17793        238 SLSVEENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       238 S~~~eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                      +  ..+..+.+...+++. ++++..+
T Consensus       181 ~--~~~~~~~~~~~l~~~-g~~~~~~  203 (230)
T 3evz_A          181 D--KEKLLNVIKERGIKL-GYSVKDI  203 (230)
T ss_dssp             S--CHHHHHHHHHHHHHT-TCEEEEE
T ss_pred             c--cHhHHHHHHHHHHHc-CCceEEE
Confidence            3  224444566667776 4655544

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.59  E-value=5.7e-15  Score=135.58  Aligned_cols=129  Identities=12%  Similarity=0.162  Sum_probs=99.9

Q ss_pred             EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEccccc
Q psy17793         69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTR  147 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~  147 (397)
                      ++.....++..++...++.+|||+|||+|..+.++|..+++.++|+++|+++.+++.+++++++.|+.+ ++++.+|+..
T Consensus        42 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  121 (223)
T 3duw_A           42 VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD  121 (223)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            345666677666666788999999999999999999987657899999999999999999999999975 9999999876


Q ss_pred             ccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793        148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK  227 (397)
Q Consensus       148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk  227 (397)
                      ....      ......++||+|++|++++.               .           ..+++.           +.++||
T Consensus       122 ~~~~------~~~~~~~~fD~v~~d~~~~~---------------~-----------~~~l~~-----------~~~~L~  158 (223)
T 3duw_A          122 SLQQ------IENEKYEPFDFIFIDADKQN---------------N-----------PAYFEW-----------ALKLSR  158 (223)
T ss_dssp             HHHH------HHHTTCCCCSEEEECSCGGG---------------H-----------HHHHHH-----------HHHTCC
T ss_pred             HHHH------HHhcCCCCcCEEEEcCCcHH---------------H-----------HHHHHH-----------HHHhcC
Confidence            4211      00001157999999987311               1           345666           889999


Q ss_pred             CCcEEEEEecCCC
Q psy17793        228 KDGILVYCTCSLS  240 (397)
Q Consensus       228 pgG~lvysTCS~~  240 (397)
                      |||.|++..+...
T Consensus       159 pgG~lv~~~~~~~  171 (223)
T 3duw_A          159 PGTVIIGDNVVRE  171 (223)
T ss_dssp             TTCEEEEESCSGG
T ss_pred             CCcEEEEeCCCcC
Confidence            9999998765543

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.58  E-value=1.8e-14  Score=142.48  Aligned_cols=142  Identities=22%  Similarity=0.199  Sum_probs=110.7

Q ss_pred             HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh
Q psy17793         75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI  154 (397)
Q Consensus        75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~  154 (397)
                      ..+...+..+++..|||+|||+|..+..+|...++...|+|+|+|+.+++.+++|++++|+.++++.+.|+.++.     
T Consensus       193 ~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~-----  267 (354)
T 3tma_A          193 QALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLP-----  267 (354)
T ss_dssp             HHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGG-----
T ss_pred             HHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCc-----
Confidence            334455677889999999999999999999876456789999999999999999999999989999999998763     


Q ss_pred             hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793        155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY  234 (397)
Q Consensus       155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy  234 (397)
                            .....||+|++||||.-   +            ......+..++.++++.           +.++|||||++++
T Consensus       268 ------~~~~~~D~Ii~npPyg~---r------------~~~~~~~~~~~~~~~~~-----------~~~~LkpgG~l~i  315 (354)
T 3tma_A          268 ------RFFPEVDRILANPPHGL---R------------LGRKEGLFHLYWDFLRG-----------ALALLPPGGRVAL  315 (354)
T ss_dssp             ------GTCCCCSEEEECCCSCC-------------------CHHHHHHHHHHHHH-----------HHHTSCTTCEEEE
T ss_pred             ------cccCCCCEEEECCCCcC---c------------cCCcccHHHHHHHHHHH-----------HHHhcCCCcEEEE
Confidence                  22356899999999732   1            11223344556788888           9999999999999


Q ss_pred             EecCCCccccHHHHHHHHHHCCCcEEE
Q psy17793        235 CTCSLSVEENEAVIAWILHRHPEVELV  261 (397)
Q Consensus       235 sTCS~~~eEnE~vV~~~L~~~~~~~l~  261 (397)
                      .||      |++.++.+++ . +++..
T Consensus       316 ~t~------~~~~~~~~~~-~-g~~~~  334 (354)
T 3tma_A          316 LTL------RPALLKRALP-P-GFALR  334 (354)
T ss_dssp             EES------CHHHHHHHCC-T-TEEEE
T ss_pred             EeC------CHHHHHHHhh-c-CcEEE
Confidence            987      3556666665 3 55554

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.58  E-value=1.1e-14  Score=129.74  Aligned_cols=135  Identities=13%  Similarity=0.141  Sum_probs=95.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      +++|++|||+|||+|..+..+|..   .++|+|+|+|+.+++.++++++++|+++++++..|...+.          .+.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~----------~~~   86 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLD----------HYV   86 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGG----------GTC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHH----------hhc
Confidence            467899999999999999999885   6799999999999999999999999988999997776542          123


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE  242 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e  242 (397)
                      .++||.|++++++-..+              ...+......+..+|++           +.++|||||+++.+.++-++.
T Consensus        87 ~~~fD~v~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~-----------~~~~LkpgG~l~i~~~~~~~~  141 (185)
T 3mti_A           87 REPIRAAIFNLGYLPSA--------------DKSVITKPHTTLEAIEK-----------ILDRLEVGGRLAIMIYYGHDG  141 (185)
T ss_dssp             CSCEEEEEEEEC-------------------------CHHHHHHHHHH-----------HHHHEEEEEEEEEEEC-----
T ss_pred             cCCcCEEEEeCCCCCCc--------------chhcccChhhHHHHHHH-----------HHHhcCCCcEEEEEEeCCCCC
Confidence            56899999986531110              11222223334667788           999999999999987765543


Q ss_pred             ---ccHHHHHHHHHHCC
Q psy17793        243 ---ENEAVIAWILHRHP  256 (397)
Q Consensus       243 ---EnE~vV~~~L~~~~  256 (397)
                         |.+ .+..+++..+
T Consensus       142 ~~~~~~-~~~~~~~~l~  157 (185)
T 3mti_A          142 GDMEKD-AVLEYVIGLD  157 (185)
T ss_dssp             -CHHHH-HHHHHHHHSC
T ss_pred             CHHHHH-HHHHHHHhCC
Confidence               333 4445555543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.58  E-value=4.9e-14  Score=127.70  Aligned_cols=140  Identities=15%  Similarity=0.160  Sum_probs=110.5

Q ss_pred             CCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc
Q psy17793         64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY  143 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~  143 (397)
                      +|.+ .++.....+...+.+.++++|||+|||+|..+..++... +.++|+++|+|+.+++.++++++++|++++++..+
T Consensus        20 ~g~~-~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~   97 (204)
T 3e05_A           20 KKLI-TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEA   97 (204)
T ss_dssp             TTTS-CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred             CCcC-ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            3555 455555566667788999999999999999999999874 46899999999999999999999999988999999


Q ss_pred             ccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q psy17793        144 DSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI  223 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~  223 (397)
                      |+.....           ....||+|+++.+..               ..           .++++.           +.
T Consensus        98 d~~~~~~-----------~~~~~D~i~~~~~~~---------------~~-----------~~~l~~-----------~~  129 (204)
T 3e05_A           98 FAPEGLD-----------DLPDPDRVFIGGSGG---------------ML-----------EEIIDA-----------VD  129 (204)
T ss_dssp             CTTTTCT-----------TSCCCSEEEESCCTT---------------CH-----------HHHHHH-----------HH
T ss_pred             Chhhhhh-----------cCCCCCEEEECCCCc---------------CH-----------HHHHHH-----------HH
Confidence            9865531           125799999987621               01           456777           88


Q ss_pred             ccccCCcEEEEEecCCCccccHHHHHHHHHHCC
Q psy17793        224 PLLKKDGILVYCTCSLSVEENEAVIAWILHRHP  256 (397)
Q Consensus       224 ~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~  256 (397)
                      ++|||||++++++++   .++.+.+...+++.+
T Consensus       130 ~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g  159 (204)
T 3e05_A          130 RRLKSEGVIVLNAVT---LDTLTKAVEFLEDHG  159 (204)
T ss_dssp             HHCCTTCEEEEEECB---HHHHHHHHHHHHHTT
T ss_pred             HhcCCCeEEEEEecc---cccHHHHHHHHHHCC
Confidence            999999999998665   345566667777763

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.58  E-value=9.2e-15  Score=140.04  Aligned_cols=125  Identities=19%  Similarity=0.236  Sum_probs=100.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      .++|++|||+|||+|..+..+|...  ..+|+|+|+|+.+++.+++|++.+|+.+ ++++++|+..+.            
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~--~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~------------  188 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP------------  188 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC------------
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhc------------
Confidence            4678999999999999999999863  2389999999999999999999999986 999999998773            


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC--
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL--  239 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~--  239 (397)
                      ..++||+|++|||++.                           .+++..           +.++|||||.+++++|+-  
T Consensus       189 ~~~~fD~Vi~~~p~~~---------------------------~~~l~~-----------~~~~LkpgG~l~~~~~~~~~  230 (278)
T 2frn_A          189 GENIADRILMGYVVRT---------------------------HEFIPK-----------ALSIAKDGAIIHYHNTVPEK  230 (278)
T ss_dssp             CCSCEEEEEECCCSSG---------------------------GGGHHH-----------HHHHEEEEEEEEEEEEEEGG
T ss_pred             ccCCccEEEECCchhH---------------------------HHHHHH-----------HHHHCCCCeEEEEEEeeccc
Confidence            2468999999999321                           234455           888999999999999983  


Q ss_pred             -CccccHHHHHHHHHHCCCcEE
Q psy17793        240 -SVEENEAVIAWILHRHPEVEL  260 (397)
Q Consensus       240 -~~eEnE~vV~~~L~~~~~~~l  260 (397)
                       ..++..+.+...+++. ++++
T Consensus       231 ~~~~~~~~~i~~~~~~~-G~~~  251 (278)
T 2frn_A          231 LMPREPFETFKRITKEY-GYDV  251 (278)
T ss_dssp             GTTTTTHHHHHHHHHHT-TCEE
T ss_pred             cccccHHHHHHHHHHHc-CCee
Confidence             2345555667777776 3444

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.57  E-value=4.6e-14  Score=128.96  Aligned_cols=138  Identities=15%  Similarity=0.162  Sum_probs=108.8

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRI  148 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~  148 (397)
                      +......+...+.+.++++|||+|||+|..+..+|..   .++|+|+|+|+.+++.++++++++|+. +++++.+|+...
T Consensus        40 ~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~  116 (204)
T 3njr_A           40 KSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA  116 (204)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh
Confidence            3444455666778899999999999999999999986   579999999999999999999999998 899999999874


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                      ..           ....||+|++++..             .   .           . +++.           +.++|||
T Consensus       117 ~~-----------~~~~~D~v~~~~~~-------------~---~-----------~-~l~~-----------~~~~Lkp  146 (204)
T 3njr_A          117 LA-----------DLPLPEAVFIGGGG-------------S---Q-----------A-LYDR-----------LWEWLAP  146 (204)
T ss_dssp             GT-----------TSCCCSEEEECSCC-------------C---H-----------H-HHHH-----------HHHHSCT
T ss_pred             cc-----------cCCCCCEEEECCcc-------------c---H-----------H-HHHH-----------HHHhcCC
Confidence            21           22479999986630             1   1           3 5666           8889999


Q ss_pred             CcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecC
Q psy17793        229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL  264 (397)
Q Consensus       229 gG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~  264 (397)
                      ||++++++++   .++.+.+..++++.+ +++..+.
T Consensus       147 gG~lv~~~~~---~~~~~~~~~~l~~~g-~~i~~i~  178 (204)
T 3njr_A          147 GTRIVANAVT---LESETLLTQLHARHG-GQLLRID  178 (204)
T ss_dssp             TCEEEEEECS---HHHHHHHHHHHHHHC-SEEEEEE
T ss_pred             CcEEEEEecC---cccHHHHHHHHHhCC-CcEEEEE
Confidence            9999999876   456666677777763 6666543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.56  E-value=1.1e-14  Score=138.94  Aligned_cols=146  Identities=14%  Similarity=0.280  Sum_probs=101.8

Q ss_pred             CCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEE
Q psy17793         63 DSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL-QLSSIQTH  141 (397)
Q Consensus        63 ~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~-g~~~v~~~  141 (397)
                      ..+...+++..+.++...+++.++++|||+|||+|..+.+++..+.+.++|+++|+++.+++.++++++++ |..++++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~  167 (275)
T 1yb2_A           88 RRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS  167 (275)
T ss_dssp             ------------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEE
T ss_pred             cccccccChhhHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEE
Confidence            34455566766777778888999999999999999999999997656789999999999999999999999 98889999


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQ  221 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~  221 (397)
                      .+|+...            +..++||+|++|+|-                 .           .++|++           
T Consensus       168 ~~d~~~~------------~~~~~fD~Vi~~~~~-----------------~-----------~~~l~~-----------  196 (275)
T 1yb2_A          168 RSDIADF------------ISDQMYDAVIADIPD-----------------P-----------WNHVQK-----------  196 (275)
T ss_dssp             CSCTTTC------------CCSCCEEEEEECCSC-----------------G-----------GGSHHH-----------
T ss_pred             ECchhcc------------CcCCCccEEEEcCcC-----------------H-----------HHHHHH-----------
Confidence            9998764            234679999998871                 1           244566           


Q ss_pred             ccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEec
Q psy17793        222 GIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       222 a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                      +.++|||||++++++++..   ..+.+...+++. ++..+..
T Consensus       197 ~~~~LkpgG~l~i~~~~~~---~~~~~~~~l~~~-Gf~~~~~  234 (275)
T 1yb2_A          197 IASMMKPGSVATFYLPNFD---QSEKTVLSLSAS-GMHHLET  234 (275)
T ss_dssp             HHHTEEEEEEEEEEESSHH---HHHHHHHHSGGG-TEEEEEE
T ss_pred             HHHHcCCCCEEEEEeCCHH---HHHHHHHHHHHC-CCeEEEE
Confidence            8889999999999987642   223334445544 4665544

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.56  E-value=4.4e-15  Score=139.54  Aligned_cols=130  Identities=14%  Similarity=0.160  Sum_probs=101.1

Q ss_pred             EEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccc
Q psy17793         68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDST  146 (397)
Q Consensus        68 ~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~  146 (397)
                      .++.....++..++...++.+|||+|||+|..|..+|..++.+++|+++|+++.+++.++++++++|+. +|+++.+|+.
T Consensus        43 ~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~  122 (242)
T 3r3h_A           43 QVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPAL  122 (242)
T ss_dssp             SCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHH
T ss_pred             ccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            356667777777777677889999999999999999998766789999999999999999999999986 6999999987


Q ss_pred             cccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q psy17793        147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLL  226 (397)
Q Consensus       147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lL  226 (397)
                      .....     .......++||+|++|++.                   ...       ..+++.           +.++|
T Consensus       123 ~~l~~-----~~~~~~~~~fD~V~~d~~~-------------------~~~-------~~~l~~-----------~~~~L  160 (242)
T 3r3h_A          123 DTLHS-----LLNEGGEHQFDFIFIDADK-------------------TNY-------LNYYEL-----------ALKLV  160 (242)
T ss_dssp             HHHHH-----HHHHHCSSCEEEEEEESCG-------------------GGH-------HHHHHH-----------HHHHE
T ss_pred             HHHHH-----HhhccCCCCEeEEEEcCCh-------------------HHh-------HHHHHH-----------HHHhc
Confidence            65311     0000013689999999861                   111       335666           88999


Q ss_pred             cCCcEEEEEecCC
Q psy17793        227 KKDGILVYCTCSL  239 (397)
Q Consensus       227 kpgG~lvysTCS~  239 (397)
                      ||||.|++..+..
T Consensus       161 kpGG~lv~d~~~~  173 (242)
T 3r3h_A          161 TPKGLIAIDNIFW  173 (242)
T ss_dssp             EEEEEEEEECSSS
T ss_pred             CCCeEEEEECCcc
Confidence            9999999876543

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.54  E-value=3e-14  Score=136.94  Aligned_cols=121  Identities=21%  Similarity=0.275  Sum_probs=95.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      .++|++|||+|||+|.+++.+|..  +..+|+|+|+|+.+++.+++|++.+|+.+ |+++++|++.+.            
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~--g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~------------  188 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP------------  188 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC------------
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc------------
Confidence            478999999999999999999875  45689999999999999999999999976 999999998874            


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE-ecC--
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC-TCS--  238 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys-TCS--  238 (397)
                      ..+.||+|++|+|+++                           .+.|..           |.++||+||.|.|. .+.  
T Consensus       189 ~~~~~D~Vi~~~p~~~---------------------------~~~l~~-----------a~~~lk~gG~ih~~~~~~e~  230 (278)
T 3k6r_A          189 GENIADRILMGYVVRT---------------------------HEFIPK-----------ALSIAKDGAIIHYHNTVPEK  230 (278)
T ss_dssp             CCSCEEEEEECCCSSG---------------------------GGGHHH-----------HHHHEEEEEEEEEEEEEEGG
T ss_pred             cccCCCEEEECCCCcH---------------------------HHHHHH-----------HHHHcCCCCEEEEEeeeccc
Confidence            3467999999999543                           123445           88899999998653 221  


Q ss_pred             CCccccHHHHHHHHHHC
Q psy17793        239 LSVEENEAVIAWILHRH  255 (397)
Q Consensus       239 ~~~eEnE~vV~~~L~~~  255 (397)
                      ...++..+.++.+.+..
T Consensus       231 ~~~~~~~e~i~~~~~~~  247 (278)
T 3k6r_A          231 LMPREPFETFKRITKEY  247 (278)
T ss_dssp             GTTTTTHHHHHHHHHHT
T ss_pred             ccchhHHHHHHHHHHHc
Confidence            22334455677777665

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.54  E-value=5e-14  Score=130.43  Aligned_cols=129  Identities=18%  Similarity=0.311  Sum_probs=105.6

Q ss_pred             CCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEE
Q psy17793         64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHV  142 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~  142 (397)
                      .|..++|...+.++..++...++.+|||+|||+|..+..+|..++ .++|+++|+++.+++.++++++++|+. ++++..
T Consensus        33 ~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~  111 (233)
T 2gpy_A           33 QQVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLF  111 (233)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC
T ss_pred             cCCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            455567888888888888888899999999999999999999864 679999999999999999999999985 599999


Q ss_pred             cccccccccchhhHHHhhh-cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccc
Q psy17793        143 YDSTRINTSSQIDIERMKL-QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQ  221 (397)
Q Consensus       143 ~D~~~~~~~~~~d~~~~~~-~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~  221 (397)
                      +|+.....         .. ..+.||+|++|++|+.                          +.++++.           
T Consensus       112 ~d~~~~~~---------~~~~~~~fD~I~~~~~~~~--------------------------~~~~l~~-----------  145 (233)
T 2gpy_A          112 GDALQLGE---------KLELYPLFDVLFIDAAKGQ--------------------------YRRFFDM-----------  145 (233)
T ss_dssp             SCGGGSHH---------HHTTSCCEEEEEEEGGGSC--------------------------HHHHHHH-----------
T ss_pred             CCHHHHHH---------hcccCCCccEEEECCCHHH--------------------------HHHHHHH-----------
Confidence            99876421         01 1468999999987421                          1456777           


Q ss_pred             ccccccCCcEEEEEecCC
Q psy17793        222 GIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       222 a~~lLkpgG~lvysTCS~  239 (397)
                      +.++|||||+++++++.+
T Consensus       146 ~~~~L~pgG~lv~~~~~~  163 (233)
T 2gpy_A          146 YSPMVRPGGLILSDNVLF  163 (233)
T ss_dssp             HGGGEEEEEEEEEETTTC
T ss_pred             HHHHcCCCeEEEEEcCCc
Confidence            899999999999986543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.53  E-value=2.9e-14  Score=131.07  Aligned_cols=112  Identities=23%  Similarity=0.228  Sum_probs=92.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEEcccccccccchhhHH
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-----LSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ++++++|||+|||+|.++.+++..++..++|+++|+++.+++.++++++++|     ..++++...|+....        
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--------  146 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY--------  146 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC--------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc--------
Confidence            7789999999999999999999987666799999999999999999999976     467999999987542        


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                         ...+.||+|+++.+|..                             ++++           +.++|||||++++++|
T Consensus       147 ---~~~~~fD~i~~~~~~~~-----------------------------~~~~-----------~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          147 ---AEEAPYDAIHVGAAAPV-----------------------------VPQA-----------LIDQLKPGGRLILPVG  183 (226)
T ss_dssp             ---GGGCCEEEEEECSBBSS-----------------------------CCHH-----------HHHTEEEEEEEEEEES
T ss_pred             ---ccCCCcCEEEECCchHH-----------------------------HHHH-----------HHHhcCCCcEEEEEEe
Confidence               13467999999988521                             1123           6788999999999999


Q ss_pred             CCCccccH
Q psy17793        238 SLSVEENE  245 (397)
Q Consensus       238 S~~~eEnE  245 (397)
                      +...+++.
T Consensus       184 ~~~~~~~~  191 (226)
T 1i1n_A          184 PAGGNQML  191 (226)
T ss_dssp             CTTSCEEE
T ss_pred             cCCCceEE
Confidence            87655544

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.53  E-value=2.7e-14  Score=128.44  Aligned_cols=139  Identities=14%  Similarity=0.202  Sum_probs=102.1

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      .++++++|||+|||+|..+..++..+++.++|+|+|+|+.+++.++++++.+|+ .+++++++|+..+..          
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------   88 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK----------   88 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG----------
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh----------
Confidence            457889999999999999999999876667999999999999999999999998 679999999877631          


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS  240 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~  240 (397)
                      +..++||+|++|+|.-..+..   .....    ..       ...+++++           +.++|||||++++++++-+
T Consensus        89 ~~~~~fD~v~~~~~~~~~~~~---~~~~~----~~-------~~~~~l~~-----------~~~~Lk~gG~l~~~~~~~~  143 (197)
T 3eey_A           89 YIDCPVKAVMFNLGYLPSGDH---SISTR----PE-------TTIQALSK-----------AMELLVTGGIITVVIYYGG  143 (197)
T ss_dssp             TCCSCEEEEEEEESBCTTSCT---TCBCC----HH-------HHHHHHHH-----------HHHHEEEEEEEEEEECCBT
T ss_pred             hccCCceEEEEcCCcccCccc---ccccC----cc-------cHHHHHHH-----------HHHhCcCCCEEEEEEccCC
Confidence            244789999999975211100   00000    11       12457777           9999999999999876544


Q ss_pred             ccc--cHHHHHHHHHHC
Q psy17793        241 VEE--NEAVIAWILHRH  255 (397)
Q Consensus       241 ~eE--nE~vV~~~L~~~  255 (397)
                      +..  ..+.+..+++..
T Consensus       144 ~~~~~~~~~~~~~~~~l  160 (197)
T 3eey_A          144 DTGFEEKEKVLEFLKGV  160 (197)
T ss_dssp             TTBSHHHHHHHHHHTTS
T ss_pred             CCcHHHHHHHHHHHHhC
Confidence            332  233445555443

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.52  E-value=5.9e-14  Score=131.49  Aligned_cols=110  Identities=15%  Similarity=0.253  Sum_probs=90.2

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhh
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      |.++||++|||+|||+|..+.++|..+++.|+|+|+|+++.+++.+++++++.  .|+..+..|......        .+
T Consensus        73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~p~~--------~~  142 (233)
T 4df3_A           73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARFPEK--------YR  142 (233)
T ss_dssp             CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTCGGG--------GT
T ss_pred             cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccCccc--------cc
Confidence            45899999999999999999999999999999999999999999999988765  488999998876521        22


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      ...++||+|++|.+...                  .       ...++.+           +.+.|||||+++.+.
T Consensus       143 ~~~~~vDvVf~d~~~~~------------------~-------~~~~l~~-----------~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          143 HLVEGVDGLYADVAQPE------------------Q-------AAIVVRN-----------ARFFLRDGGYMLMAI  182 (233)
T ss_dssp             TTCCCEEEEEECCCCTT------------------H-------HHHHHHH-----------HHHHEEEEEEEEEEE
T ss_pred             cccceEEEEEEeccCCh------------------h-------HHHHHHH-----------HHHhccCCCEEEEEE
Confidence            44578999999987321                  1       1446677           889999999999873

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.50  E-value=9.4e-15  Score=131.97  Aligned_cols=146  Identities=14%  Similarity=0.153  Sum_probs=76.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..+..++... +..+|+++|+|+.+++.++++++.++. ++++..+|+......       .....
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~-------~~~~~   99 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIE-------RAERG   99 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC--------------------CCHHHHHHHHHH-------HHHTT
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhh-------hhhcc
Confidence            678899999999999999999974 467999999999999999999999988 788888888653100       00123


Q ss_pred             cCccEEEEcCCCCCCCCCc----ccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        164 ESFDRILLDAPCSGFGQRP----MFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p----~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                      ++||+|++|||+...+...    ..........+......+ ....+++++           +.++|||||++++.++. 
T Consensus       100 ~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~-----------~~~~LkpgG~l~~~~~~-  166 (215)
T 4dzr_A          100 RPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGL-QFYRRMAAL-----------PPYVLARGRAGVFLEVG-  166 (215)
T ss_dssp             CCBSEEEECCCCCC------------------------CTT-HHHHHHHTC-----------CGGGBCSSSEEEEEECT-
T ss_pred             CcccEEEECCCCCCCccccccChhhhccCccccccCCCcHH-HHHHHHHHH-----------HHHHhcCCCeEEEEEEC-
Confidence            7899999999997655211    110000000000000011 111566777           99999999995555443 


Q ss_pred             CccccHHHHHHHHH
Q psy17793        240 SVEENEAVIAWILH  253 (397)
Q Consensus       240 ~~eEnE~vV~~~L~  253 (397)
                        ....+.+..+++
T Consensus       167 --~~~~~~~~~~l~  178 (215)
T 4dzr_A          167 --HNQADEVARLFA  178 (215)
T ss_dssp             --TSCHHHHHHHTG
T ss_pred             --CccHHHHHHHHH
Confidence              334445555555

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.50  E-value=1.5e-13  Score=123.05  Aligned_cols=111  Identities=15%  Similarity=0.156  Sum_probs=88.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..+..+++.  +..+|+|+|+|+.+++.+++|++.+++.+++++++|+.++..         .+..
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~  111 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVA---------AGTT  111 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHH---------HCCS
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHh---------hccC
Confidence            57889999999999999987773  456899999999999999999999999889999999987631         1235


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccc--cccCCcEEEEEecC
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIP--LLKKDGILVYCTCS  238 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~--lLkpgG~lvysTCS  238 (397)
                      ++||+|++|||+...               ....       .+++..           +.+  +|||||++++.+.+
T Consensus       112 ~~fD~i~~~~p~~~~---------------~~~~-------~~~l~~-----------~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          112 SPVDLVLADPPYNVD---------------SADV-------DAILAA-----------LGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             SCCSEEEECCCTTSC---------------HHHH-------HHHHHH-----------HHHSSSCCTTCEEEEEEET
T ss_pred             CCccEEEECCCCCcc---------------hhhH-------HHHHHH-----------HHhcCccCCCeEEEEEecC
Confidence            789999999994220               1111       445555           666  99999999998665

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.50  E-value=1.3e-13  Score=129.07  Aligned_cols=131  Identities=17%  Similarity=0.246  Sum_probs=102.9

Q ss_pred             chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEccccccc
Q psy17793         71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRIN  149 (397)
Q Consensus        71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~  149 (397)
                      ......+...+++.++.+|||+|||+|..+.+++..+++.++|+++|+++.+++.++++++.+|+.+ +++...|+... 
T Consensus        79 ~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-  157 (255)
T 3mb5_A           79 PKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-  157 (255)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-
T ss_pred             HhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-
Confidence            3444566667888999999999999999999999987777899999999999999999999999987 99999999754 


Q ss_pred             ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793        150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD  229 (397)
Q Consensus       150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg  229 (397)
                                 +..++||.|++|+|+.                            ..++++           +.++||||
T Consensus       158 -----------~~~~~~D~v~~~~~~~----------------------------~~~l~~-----------~~~~L~~g  187 (255)
T 3mb5_A          158 -----------IEEENVDHVILDLPQP----------------------------ERVVEH-----------AAKALKPG  187 (255)
T ss_dssp             -----------CCCCSEEEEEECSSCG----------------------------GGGHHH-----------HHHHEEEE
T ss_pred             -----------cCCCCcCEEEECCCCH----------------------------HHHHHH-----------HHHHcCCC
Confidence                       2456799999999821                            234555           88899999


Q ss_pred             cEEEEEecCCCccccHHHHHHHHHHC
Q psy17793        230 GILVYCTCSLSVEENEAVIAWILHRH  255 (397)
Q Consensus       230 G~lvysTCS~~~eEnE~vV~~~L~~~  255 (397)
                      |+++..+-+  . +..+.+...++++
T Consensus       188 G~l~~~~~~--~-~~~~~~~~~l~~~  210 (255)
T 3mb5_A          188 GFFVAYTPC--S-NQVMRLHEKLREF  210 (255)
T ss_dssp             EEEEEEESS--H-HHHHHHHHHHHHT
T ss_pred             CEEEEEECC--H-HHHHHHHHHHHHc
Confidence            999876322  2 2333444556655

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.50  E-value=4.7e-14  Score=133.72  Aligned_cols=141  Identities=13%  Similarity=0.217  Sum_probs=98.8

Q ss_pred             hhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH---hCCC-cEEEEEccccc
Q psy17793         72 LPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKK---LQLS-SIQTHVYDSTR  147 (397)
Q Consensus        72 ~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~---~g~~-~v~~~~~D~~~  147 (397)
                      ..+.+++.++...++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++|++.   +++. +++++++|+..
T Consensus        23 ~D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~  101 (260)
T 2ozv_A           23 MDAMLLASLVADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTL  101 (260)
T ss_dssp             CHHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTC
T ss_pred             cHHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHH
Confidence            456777888888889999999999999999999975 457999999999999999999998   8886 49999999987


Q ss_pred             ccccchhhHHHhhhcccCccEEEEcCCCCCCC-C-CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q psy17793        148 INTSSQIDIERMKLQKESFDRILLDAPCSGFG-Q-RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPL  225 (397)
Q Consensus       148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G-~-~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~l  225 (397)
                      ....    .....+..++||+|++|||+...+ . .++......       ..........+++.           +.++
T Consensus       102 ~~~~----~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a-------~~~~~~~~~~~l~~-----------~~~~  159 (260)
T 2ozv_A          102 RAKA----RVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEA-------HAMTEGLFEDWIRT-----------ASAI  159 (260)
T ss_dssp             CHHH----HHHTTCCTTCEEEEEECCCC----------------------------CCHHHHHHH-----------HHHH
T ss_pred             Hhhh----hhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHH-------hhcCcCCHHHHHHH-----------HHHH
Confidence            6210    000013456899999999987653 1 111110000       00000112567888           9999


Q ss_pred             ccCCcEEEEE
Q psy17793        226 LKKDGILVYC  235 (397)
Q Consensus       226 LkpgG~lvys  235 (397)
                      |||||++++.
T Consensus       160 LkpgG~l~~~  169 (260)
T 2ozv_A          160 MVSGGQLSLI  169 (260)
T ss_dssp             EEEEEEEEEE
T ss_pred             cCCCCEEEEE
Confidence            9999999885

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.49  E-value=1.3e-13  Score=132.78  Aligned_cols=154  Identities=12%  Similarity=0.056  Sum_probs=105.2

Q ss_pred             CCcEEEechhHHHHHhccC---CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EE
Q psy17793         64 SSMGILQNLPSILAGHYLD---VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQ  139 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L~---~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~  139 (397)
                      .+.++....+..++..+++   ..++.+|||+|||+|..+..++..  +..+|+|+|+|+.+++.+++|++++|+.+ ++
T Consensus        99 ~~~lipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~  176 (284)
T 1nv8_A           99 EGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFF  176 (284)
T ss_dssp             TTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEE
T ss_pred             CCceecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceE
Confidence            4444444445454444432   346789999999999999999987  56799999999999999999999999986 99


Q ss_pred             EEEcccccccccchhhHHHhhhcccCc---cEEEEcCCCCCCCC--CcccccccCccchHHHHHHHHHHHHHHHHHHhhh
Q psy17793        140 THVYDSTRINTSSQIDIERMKLQKESF---DRILLDAPCSGFGQ--RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRF  214 (397)
Q Consensus       140 ~~~~D~~~~~~~~~~d~~~~~~~~~~f---D~Il~DpPCSg~G~--~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f  214 (397)
                      ++.+|+....            . ++|   |+|++||||.+.+.  .++.. ...    ...+..- .-...++++    
T Consensus       177 ~~~~D~~~~~------------~-~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep----~~al~~~-~dgl~~~~~----  233 (284)
T 1nv8_A          177 VRKGEFLEPF------------K-EKFASIEMILSNPPYVKSSAHLPKDVL-FEP----PEALFGG-EDGLDFYRE----  233 (284)
T ss_dssp             EEESSTTGGG------------G-GGTTTCCEEEECCCCBCGGGSCTTSCC-CSC----HHHHBCT-TTSCHHHHH----
T ss_pred             EEECcchhhc------------c-cccCCCCEEEEcCCCCCcccccChhhc-cCc----HHHhcCC-CcHHHHHHH----
Confidence            9999997642            1 367   99999999998653  23332 111    1111000 000245566    


Q ss_pred             hcccccccc-ccccCCcEEEEEecCCCccccHHHHHHHHH
Q psy17793        215 VSLFDWQGI-PLLKKDGILVYCTCSLSVEENEAVIAWILH  253 (397)
Q Consensus       215 ~~~~~~~a~-~lLkpgG~lvysTCS~~~eEnE~vV~~~L~  253 (397)
                             +. +.|+|||.+++.   +...+.+++ ..+++
T Consensus       234 -------i~~~~l~pgG~l~~e---~~~~q~~~v-~~~~~  262 (284)
T 1nv8_A          234 -------FFGRYDTSGKIVLME---IGEDQVEEL-KKIVS  262 (284)
T ss_dssp             -------HHHHCCCTTCEEEEE---CCTTCHHHH-TTTST
T ss_pred             -------HHHhcCCCCCEEEEE---ECchHHHHH-HHHHH
Confidence                   77 889999999974   444444543 33443

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.48  E-value=1e-13  Score=128.50  Aligned_cols=125  Identities=17%  Similarity=0.220  Sum_probs=96.8

Q ss_pred             EechhHHHHHhcc---CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEEc
Q psy17793         69 LQNLPSILAGHYL---DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS--SIQTHVY  143 (397)
Q Consensus        69 ~Qd~~S~l~~~~L---~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~--~v~~~~~  143 (397)
                      ++.....++..++   .++++.+|||+|||+|..|..+|..++++++|+++|+|+.+++.+++++++.|+.  +|+++.+
T Consensus        37 i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~g  116 (221)
T 3dr5_A           37 PDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS  116 (221)
T ss_dssp             CCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred             CCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEc
Confidence            3444444444443   3444559999999999999999998776789999999999999999999999987  6999999


Q ss_pred             ccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q psy17793        144 DSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI  223 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~  223 (397)
                      |+......         +..++||+|++|++.                   ...       ..+++.           +.
T Consensus       117 da~~~l~~---------~~~~~fD~V~~d~~~-------------------~~~-------~~~l~~-----------~~  150 (221)
T 3dr5_A          117 RPLDVMSR---------LANDSYQLVFGQVSP-------------------MDL-------KALVDA-----------AW  150 (221)
T ss_dssp             CHHHHGGG---------SCTTCEEEEEECCCT-------------------TTH-------HHHHHH-----------HH
T ss_pred             CHHHHHHH---------hcCCCcCeEEEcCcH-------------------HHH-------HHHHHH-----------HH
Confidence            98776421         225789999999861                   111       335666           88


Q ss_pred             ccccCCcEEEEEecCC
Q psy17793        224 PLLKKDGILVYCTCSL  239 (397)
Q Consensus       224 ~lLkpgG~lvysTCS~  239 (397)
                      ++|||||.|++..+.+
T Consensus       151 ~~LkpGG~lv~dn~~~  166 (221)
T 3dr5_A          151 PLLRRGGALVLADALL  166 (221)
T ss_dssp             HHEEEEEEEEETTTTG
T ss_pred             HHcCCCcEEEEeCCCC
Confidence            9999999999987654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.48  E-value=8.9e-13  Score=125.45  Aligned_cols=135  Identities=17%  Similarity=0.215  Sum_probs=104.4

Q ss_pred             HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccch
Q psy17793         75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQ  153 (397)
Q Consensus        75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~  153 (397)
                      ..+...+++.++.+|||+|||+|..+..++..+++.++|+++|+++.+++.+++|++++++ +++++...|+....    
T Consensus       102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----  177 (277)
T 1o54_A          102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF----  177 (277)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC----
T ss_pred             HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc----
Confidence            3445567888999999999999999999999876678999999999999999999999998 57999999987652    


Q ss_pred             hhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793        154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV  233 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv  233 (397)
                              ..+.||+|++|+|+.                            .++|.+           +.++|||||+++
T Consensus       178 --------~~~~~D~V~~~~~~~----------------------------~~~l~~-----------~~~~L~pgG~l~  210 (277)
T 1o54_A          178 --------DEKDVDALFLDVPDP----------------------------WNYIDK-----------CWEALKGGGRFA  210 (277)
T ss_dssp             --------SCCSEEEEEECCSCG----------------------------GGTHHH-----------HHHHEEEEEEEE
T ss_pred             --------cCCccCEEEECCcCH----------------------------HHHHHH-----------HHHHcCCCCEEE
Confidence                    345799999999831                            234555           788899999999


Q ss_pred             EEecCCCccccHHHHHHHHHHCCCcEEEecC
Q psy17793        234 YCTCSLSVEENEAVIAWILHRHPEVELVQTL  264 (397)
Q Consensus       234 ysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~  264 (397)
                      +.+++.   +....+...+++. ++..+...
T Consensus       211 ~~~~~~---~~~~~~~~~l~~~-gf~~~~~~  237 (277)
T 1o54_A          211 TVCPTT---NQVQETLKKLQEL-PFIRIEVW  237 (277)
T ss_dssp             EEESSH---HHHHHHHHHHHHS-SEEEEEEE
T ss_pred             EEeCCH---HHHHHHHHHHHHC-CCceeEEE
Confidence            987653   2222344455554 56655543

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.48  E-value=6.3e-13  Score=132.53  Aligned_cols=153  Identities=13%  Similarity=0.124  Sum_probs=110.6

Q ss_pred             cCCCcEEEechhHHHHHhcc-CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYL-DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT  140 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L-~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~  140 (397)
                      +..++...|+..+.++.... ...+|.+|||+| |+|..+..++.. +..++|+++|+|+.+++.+++|++++|+.+|++
T Consensus       148 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~  225 (373)
T 2qm3_A          148 FDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGYEDIEI  225 (373)
T ss_dssp             GTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEE
T ss_pred             cCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEE
Confidence            34455555666555543322 234688999999 999999988775 344799999999999999999999999988999


Q ss_pred             EEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccc
Q psy17793        141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDW  220 (397)
Q Consensus       141 ~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~  220 (397)
                      +.+|+......         ...++||+|++||||+.                 ..      . ..+|++          
T Consensus       226 ~~~D~~~~l~~---------~~~~~fD~Vi~~~p~~~-----------------~~------~-~~~l~~----------  262 (373)
T 2qm3_A          226 FTFDLRKPLPD---------YALHKFDTFITDPPETL-----------------EA------I-RAFVGR----------  262 (373)
T ss_dssp             ECCCTTSCCCT---------TTSSCBSEEEECCCSSH-----------------HH------H-HHHHHH----------
T ss_pred             EEChhhhhchh---------hccCCccEEEECCCCch-----------------HH------H-HHHHHH----------
Confidence            99999873210         12357999999999642                 21      1 677888          


Q ss_pred             cccccccCCc-EEEEEecCCCccccH---HHHHHHHH-HCCCcEEEec
Q psy17793        221 QGIPLLKKDG-ILVYCTCSLSVEENE---AVIAWILH-RHPEVELVQT  263 (397)
Q Consensus       221 ~a~~lLkpgG-~lvysTCS~~~eEnE---~vV~~~L~-~~~~~~l~~~  263 (397)
                       +.++||||| .++|++|+  .+++.   +.+..+++ +. ++....+
T Consensus       263 -~~~~LkpgG~~~~~~~~~--~~~~~~~~~~~~~~l~~~~-g~~~~~~  306 (373)
T 2qm3_A          263 -GIATLKGPRCAGYFGITR--RESSLDKWREIQKLLLNEF-NVVITDI  306 (373)
T ss_dssp             -HHHTBCSTTCEEEEEECT--TTCCHHHHHHHHHHHHHTS-CCEEEEE
T ss_pred             -HHHHcccCCeEEEEEEec--CcCCHHHHHHHHHHHHHhc-Ccchhhh
Confidence             999999999 55888776  23444   45667776 55 4554433

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.47  E-value=6.7e-13  Score=120.10  Aligned_cols=133  Identities=17%  Similarity=0.106  Sum_probs=103.5

Q ss_pred             HHHHhccC--CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc
Q psy17793         75 ILAGHYLD--VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS  152 (397)
Q Consensus        75 ~l~~~~L~--~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~  152 (397)
                      ......+.  +.++.+|||+|||+|..+..++..  +..+|+|+|+|+.+++.++++++..++.++++...|+...    
T Consensus        48 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----  121 (205)
T 3grz_A           48 QLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD----  121 (205)
T ss_dssp             HHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT----
T ss_pred             HHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc----
Confidence            33334444  567899999999999999998874  4569999999999999999999999998899999998764    


Q ss_pred             hhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE
Q psy17793        153 QIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL  232 (397)
Q Consensus       153 ~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l  232 (397)
                               ..++||+|+++++                   ...+       .+++++           +.++|||||++
T Consensus       122 ---------~~~~fD~i~~~~~-------------------~~~~-------~~~l~~-----------~~~~L~~gG~l  155 (205)
T 3grz_A          122 ---------VDGKFDLIVANIL-------------------AEIL-------LDLIPQ-----------LDSHLNEDGQV  155 (205)
T ss_dssp             ---------CCSCEEEEEEESC-------------------HHHH-------HHHGGG-----------SGGGEEEEEEE
T ss_pred             ---------CCCCceEEEECCc-------------------HHHH-------HHHHHH-----------HHHhcCCCCEE
Confidence                     2468999999886                   2221       456777           99999999999


Q ss_pred             EEEecCCCccccHHHHHHHHHHCCCcEEEec
Q psy17793        233 VYCTCSLSVEENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       233 vysTCS~~~eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                      ++++..   .+..+.+...+++. +++.+..
T Consensus       156 ~~~~~~---~~~~~~~~~~~~~~-Gf~~~~~  182 (205)
T 3grz_A          156 IFSGID---YLQLPKIEQALAEN-SFQIDLK  182 (205)
T ss_dssp             EEEEEE---GGGHHHHHHHHHHT-TEEEEEE
T ss_pred             EEEecC---cccHHHHHHHHHHc-CCceEEe
Confidence            997543   33455666777776 5776654

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.47  E-value=1.1e-13  Score=132.09  Aligned_cols=109  Identities=22%  Similarity=0.288  Sum_probs=88.7

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      +..+.++++|||+|||+|..+..+|... +.++|+|+|+++.+++.+++|++.+|++++.++.+|+... .         
T Consensus       114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~---------  182 (272)
T 3a27_A          114 AFISNENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-E---------  182 (272)
T ss_dssp             HTSCCTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-C---------
T ss_pred             HHhcCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-C---------
Confidence            3446789999999999999999999874 3569999999999999999999999999999999999865 1         


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                       . .++||+|++|||.             .   .           .+++..           +.+.|||||+++++ |..
T Consensus       183 -~-~~~~D~Vi~d~p~-------------~---~-----------~~~l~~-----------~~~~LkpgG~l~~s-~~~  221 (272)
T 3a27_A          183 -L-KDVADRVIMGYVH-------------K---T-----------HKFLDK-----------TFEFLKDRGVIHYH-ETV  221 (272)
T ss_dssp             -C-TTCEEEEEECCCS-------------S---G-----------GGGHHH-----------HHHHEEEEEEEEEE-EEE
T ss_pred             -c-cCCceEEEECCcc-------------c---H-----------HHHHHH-----------HHHHcCCCCEEEEE-EcC
Confidence             1 3579999999993             0   1           234555           78889999988755 543


Q ss_pred             C
Q psy17793        240 S  240 (397)
Q Consensus       240 ~  240 (397)
                      .
T Consensus       222 ~  222 (272)
T 3a27_A          222 A  222 (272)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.46  E-value=5e-13  Score=118.40  Aligned_cols=140  Identities=16%  Similarity=0.196  Sum_probs=104.7

Q ss_pred             hhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEEccccccc
Q psy17793         72 LPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS--IQTHVYDSTRIN  149 (397)
Q Consensus        72 ~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~--v~~~~~D~~~~~  149 (397)
                      ..+..+...+...++.+|||+|||+|..+..++..   ..+|+++|+++.+++.++++++..++.+  +++...|+....
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~  115 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV  115 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc
Confidence            45555666777788999999999999999988875   5799999999999999999999999987  999999987642


Q ss_pred             ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793        150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD  229 (397)
Q Consensus       150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg  229 (397)
                                  ..++||+|++|+|...           .    ...       ...+++.           +.++||||
T Consensus       116 ------------~~~~~D~v~~~~~~~~-----------~----~~~-------~~~~l~~-----------~~~~L~~g  150 (194)
T 1dus_A          116 ------------KDRKYNKIITNPPIRA-----------G----KEV-------LHRIIEE-----------GKELLKDN  150 (194)
T ss_dssp             ------------TTSCEEEEEECCCSTT-----------C----HHH-------HHHHHHH-----------HHHHEEEE
T ss_pred             ------------ccCCceEEEECCCccc-----------c----hhH-------HHHHHHH-----------HHHHcCCC
Confidence                        3468999999988321           1    111       2556777           88999999


Q ss_pred             cEEEEEecCCCccccHHHHHHHHHHCCCcEEE
Q psy17793        230 GILVYCTCSLSVEENEAVIAWILHRHPEVELV  261 (397)
Q Consensus       230 G~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~  261 (397)
                      |.+++++.+.  ...++..+.+-+.+.+++..
T Consensus       151 G~l~~~~~~~--~~~~~~~~~l~~~~~~~~~~  180 (194)
T 1dus_A          151 GEIWVVIQTK--QGAKSLAKYMKDVFGNVETV  180 (194)
T ss_dssp             EEEEEEEEST--HHHHHHHHHHHHHHSCCEEE
T ss_pred             CEEEEEECCC--CChHHHHHHHHHHhcceEEE
Confidence            9999987653  23333444443444344443

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.46  E-value=3.7e-13  Score=118.32  Aligned_cols=134  Identities=16%  Similarity=0.141  Sum_probs=100.5

Q ss_pred             HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccch
Q psy17793         75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQ  153 (397)
Q Consensus        75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~  153 (397)
                      ..+...+.+.++++|||+|||+|..+.+++... +..+|+++|+|+.+++.++++++++|+. ++ ++..|+....    
T Consensus        15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~----   88 (178)
T 3hm2_A           15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAF----   88 (178)
T ss_dssp             HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGG----
T ss_pred             HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhh----
Confidence            344456678899999999999999999998865 4689999999999999999999999987 78 8888875432    


Q ss_pred             hhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793        154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV  233 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv  233 (397)
                            +...++||+|+++.+.                  ..         .+++++           +.++|||||+++
T Consensus        89 ------~~~~~~~D~i~~~~~~------------------~~---------~~~l~~-----------~~~~L~~gG~l~  124 (178)
T 3hm2_A           89 ------DDVPDNPDVIFIGGGL------------------TA---------PGVFAA-----------AWKRLPVGGRLV  124 (178)
T ss_dssp             ------GGCCSCCSEEEECC-T------------------TC---------TTHHHH-----------HHHTCCTTCEEE
T ss_pred             ------hccCCCCCEEEECCcc------------------cH---------HHHHHH-----------HHHhcCCCCEEE
Confidence                  1122689999986541                  00         345666           888999999999


Q ss_pred             EEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793        234 YCTCSLSVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       234 ysTCS~~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                      +++++.   ++......+++++. .++..
T Consensus       125 ~~~~~~---~~~~~~~~~~~~~~-~~~~~  149 (178)
T 3hm2_A          125 ANAVTV---ESEQMLWALRKQFG-GTISS  149 (178)
T ss_dssp             EEECSH---HHHHHHHHHHHHHC-CEEEE
T ss_pred             EEeecc---ccHHHHHHHHHHcC-CeeEE
Confidence            987653   44555666666663 44443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.46  E-value=2.3e-13  Score=123.78  Aligned_cols=110  Identities=17%  Similarity=0.173  Sum_probs=86.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEEcccccccccchhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL--SSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~--~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ++.+|||+|||+|..+..++..  ...+|+|+|+|+.+++.+++|++.+|+  ++++++++|+..+...         ..
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~  121 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ---------PQ  121 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS---------CC
T ss_pred             CCCeEEEcCCccCHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh---------hc
Confidence            6789999999999999987764  346899999999999999999999998  6899999998765311         12


Q ss_pred             ccC-ccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccc--cccccCCcEEEEEecCC
Q psy17793        163 KES-FDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQG--IPLLKKDGILVYCTCSL  239 (397)
Q Consensus       163 ~~~-fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a--~~lLkpgG~lvysTCS~  239 (397)
                      .++ ||+|++|||+. .          .     . .       .++++.           +  .++|||||.+++++|+.
T Consensus       122 ~~~~fD~I~~~~~~~-~----------~-----~-~-------~~~l~~-----------~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          122 NQPHFDVVFLDPPFH-F----------N-----L-A-------EQAISL-----------LCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             SSCCEEEEEECCCSS-S----------C-----H-H-------HHHHHH-----------HHHTTCEEEEEEEEEEEESS
T ss_pred             cCCCCCEEEECCCCC-C----------c-----c-H-------HHHHHH-----------HHhcCccCCCcEEEEEECCC
Confidence            467 99999999942 1          0     0 0       233444           4  67899999999998875


Q ss_pred             C
Q psy17793        240 S  240 (397)
Q Consensus       240 ~  240 (397)
                      .
T Consensus       167 ~  167 (201)
T 2ift_A          167 K  167 (201)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.45  E-value=4.5e-13  Score=125.14  Aligned_cols=130  Identities=20%  Similarity=0.182  Sum_probs=100.0

Q ss_pred             EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEccccc
Q psy17793         69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTR  147 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~  147 (397)
                      ++.....++..++...++.+|||+|||+|..+..+|..+.+.++|+++|+|+.+++.+++++++.|+. +|+++.+|+..
T Consensus        54 ~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~  133 (237)
T 3c3y_A           54 TSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML  133 (237)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            45555666666666667789999999999999999998866789999999999999999999999986 49999999876


Q ss_pred             ccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793        148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK  227 (397)
Q Consensus       148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk  227 (397)
                      ....    .....+..++||.|++|+++.                   .       ...+++.           +.++||
T Consensus       134 ~l~~----l~~~~~~~~~fD~I~~d~~~~-------------------~-------~~~~l~~-----------~~~~L~  172 (237)
T 3c3y_A          134 ALDN----LLQGQESEGSYDFGFVDADKP-------------------N-------YIKYHER-----------LMKLVK  172 (237)
T ss_dssp             HHHH----HHHSTTCTTCEEEEEECSCGG-------------------G-------HHHHHHH-----------HHHHEE
T ss_pred             HHHH----HHhccCCCCCcCEEEECCchH-------------------H-------HHHHHHH-----------HHHhcC
Confidence            5311    000000146899999998621                   1       1455666           888999


Q ss_pred             CCcEEEEEecCC
Q psy17793        228 KDGILVYCTCSL  239 (397)
Q Consensus       228 pgG~lvysTCS~  239 (397)
                      |||.|++.+|.+
T Consensus       173 pGG~lv~d~~~~  184 (237)
T 3c3y_A          173 VGGIVAYDNTLW  184 (237)
T ss_dssp             EEEEEEEECTTG
T ss_pred             CCeEEEEecCCc
Confidence            999999998754

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.45  E-value=3.6e-13  Score=122.07  Aligned_cols=135  Identities=16%  Similarity=0.208  Sum_probs=92.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .++|.+|||+|||||++|..+++.   .++|+|+|+++..           .+.+++++.+|++.....   +.-...+.
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~---~~~~~~~~   85 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIF---DDIDRALR   85 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHH---HHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cCCCeEEEEccccCHHHH---HHHHHHhh
Confidence            468999999999999999999885   6899999999852           346799999998765211   00000011


Q ss_pred             ---ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        163 ---KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       163 ---~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                         .++||+|++|+++..+|..       .     .+......++..+|+.           +.++|||||.++..+   
T Consensus        86 ~~~~~~~D~Vlsd~~~~~~g~~-------~-----~d~~~~~~l~~~~l~~-----------a~~~LkpGG~lv~k~---  139 (191)
T 3dou_A           86 EEGIEKVDDVVSDAMAKVSGIP-------S-----RDHAVSYQIGQRVMEI-----------AVRYLRNGGNVLLKQ---  139 (191)
T ss_dssp             HHTCSSEEEEEECCCCCCCSCH-------H-----HHHHHHHHHHHHHHHH-----------HHHHEEEEEEEEEEE---
T ss_pred             cccCCcceEEecCCCcCCCCCc-------c-----cCHHHHHHHHHHHHHH-----------HHHHccCCCEEEEEE---
Confidence               1489999999987666531       1     1122223455777777           999999999999763   


Q ss_pred             CccccHHHHHHHHHHCCCcEEEe
Q psy17793        240 SVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       240 ~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                      ...++...+.+.++.+  |..+.
T Consensus       140 ~~~~~~~~~~~~l~~~--F~~v~  160 (191)
T 3dou_A          140 FQGDMTNDFIAIWRKN--FSSYK  160 (191)
T ss_dssp             ECSTHHHHHHHHHGGG--EEEEE
T ss_pred             cCCCCHHHHHHHHHHh--cCEEE
Confidence            3344555566666554  44443

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.45  E-value=4.8e-13  Score=121.83  Aligned_cols=140  Identities=19%  Similarity=0.230  Sum_probs=107.0

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      +...+.+.++.+|||+|||+|..+..++...++..+|+++|+|+.+++.++++++..++.++++...|+..+.       
T Consensus        29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-------  101 (219)
T 3dh0_A           29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP-------  101 (219)
T ss_dssp             HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS-------
T ss_pred             HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC-------
Confidence            3345677889999999999999999999986556799999999999999999999999989999999997753       


Q ss_pred             HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                          +..++||+|++.-.          .....         .    ...+|++           +.++|||||++++++
T Consensus       102 ----~~~~~fD~v~~~~~----------l~~~~---------~----~~~~l~~-----------~~~~LkpgG~l~i~~  143 (219)
T 3dh0_A          102 ----LPDNTVDFIFMAFT----------FHELS---------E----PLKFLEE-----------LKRVAKPFAYLAIID  143 (219)
T ss_dssp             ----SCSSCEEEEEEESC----------GGGCS---------S----HHHHHHH-----------HHHHEEEEEEEEEEE
T ss_pred             ----CCCCCeeEEEeehh----------hhhcC---------C----HHHHHHH-----------HHHHhCCCeEEEEEE
Confidence                34578999998432          11111         0    1567777           889999999999987


Q ss_pred             cCCCcc---------ccHHHHHHHHHHCCCcEEEe
Q psy17793        237 CSLSVE---------ENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       237 CS~~~e---------EnE~vV~~~L~~~~~~~l~~  262 (397)
                      +.....         -+.+.+..++++. +++.+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~~~  177 (219)
T 3dh0_A          144 WKKEERDKGPPPEEVYSEWEVGLILEDA-GIRVGR  177 (219)
T ss_dssp             ECSSCCSSSCCGGGSCCHHHHHHHHHHT-TCEEEE
T ss_pred             ecccccccCCchhcccCHHHHHHHHHHC-CCEEEE
Confidence            653322         2345666677776 466554

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.44  E-value=5.6e-13  Score=122.23  Aligned_cols=128  Identities=19%  Similarity=0.202  Sum_probs=98.2

Q ss_pred             EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEccccc
Q psy17793         69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTR  147 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~  147 (397)
                      ++.....++..++...++.+|||+|||+|..+.++|..+++.++|+++|+++.+++.+++++++.|+.+ ++++.+|+..
T Consensus        48 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  127 (225)
T 3tr6_A           48 TAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKD  127 (225)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHH
Confidence            445556666666666678899999999999999999987657899999999999999999999999975 9999999865


Q ss_pred             ccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793        148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK  227 (397)
Q Consensus       148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk  227 (397)
                      ....     .......++||+|++|++.                   ...       ..+++.           +.++||
T Consensus       128 ~~~~-----~~~~~~~~~fD~v~~~~~~-------------------~~~-------~~~l~~-----------~~~~L~  165 (225)
T 3tr6_A          128 TLAE-----LIHAGQAWQYDLIYIDADK-------------------ANT-------DLYYEE-----------SLKLLR  165 (225)
T ss_dssp             HHHH-----HHTTTCTTCEEEEEECSCG-------------------GGH-------HHHHHH-----------HHHHEE
T ss_pred             HHHH-----hhhccCCCCccEEEECCCH-------------------HHH-------HHHHHH-----------HHHhcC
Confidence            4211     0000011689999999871                   111       345666           889999


Q ss_pred             CCcEEEEEecC
Q psy17793        228 KDGILVYCTCS  238 (397)
Q Consensus       228 pgG~lvysTCS  238 (397)
                      |||+|++....
T Consensus       166 pgG~lv~~~~~  176 (225)
T 3tr6_A          166 EGGLIAVDNVL  176 (225)
T ss_dssp             EEEEEEEECSS
T ss_pred             CCcEEEEeCCC
Confidence            99999987654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.44  E-value=2.3e-13  Score=135.54  Aligned_cols=93  Identities=17%  Similarity=0.220  Sum_probs=69.5

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH----
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI----  156 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~----  156 (397)
                      ++.. +++|||+|||+|.+++.+|..   ..+|+|+|+|+.+++.+++|++.+|+++++++.+|+..+........    
T Consensus       210 ~~~~-~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~  285 (369)
T 3bt7_A          210 TKGS-KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR  285 (369)
T ss_dssp             TTTC-CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTT
T ss_pred             hhcC-CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccc
Confidence            4433 678999999999999988873   46999999999999999999999999999999999976531100000    


Q ss_pred             -HHhhhcccCccEEEEcCCCCC
Q psy17793        157 -ERMKLQKESFDRILLDAPCSG  177 (397)
Q Consensus       157 -~~~~~~~~~fD~Il~DpPCSg  177 (397)
                       ........+||+|++|||++|
T Consensus       286 l~~~~~~~~~fD~Vv~dPPr~g  307 (369)
T 3bt7_A          286 LQGIDLKSYQCETIFVDPPRSG  307 (369)
T ss_dssp             GGGSCGGGCCEEEEEECCCTTC
T ss_pred             ccccccccCCCCEEEECcCccc
Confidence             000000137999999999764

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.43  E-value=8.8e-13  Score=123.13  Aligned_cols=135  Identities=19%  Similarity=0.270  Sum_probs=102.6

Q ss_pred             HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEEcccccccccch
Q psy17793         75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL-QLSSIQTHVYDSTRINTSSQ  153 (397)
Q Consensus        75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~-g~~~v~~~~~D~~~~~~~~~  153 (397)
                      ..+...+++.++++|||+|||+|..+..++..+++.++|+++|+++.+++.++++++.+ |..++++...|+....    
T Consensus        86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~----  161 (258)
T 2pwy_A           86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE----  161 (258)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC----
T ss_pred             HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC----
Confidence            44556678889999999999999999999998766789999999999999999999998 8778999999987651    


Q ss_pred             hhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793        154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV  233 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv  233 (397)
                             +..+.||+|++|+|.                 .           .++|++           +.++|||||+++
T Consensus       162 -------~~~~~~D~v~~~~~~-----------------~-----------~~~l~~-----------~~~~L~~gG~l~  195 (258)
T 2pwy_A          162 -------LEEAAYDGVALDLME-----------------P-----------WKVLEK-----------AALALKPDRFLV  195 (258)
T ss_dssp             -------CCTTCEEEEEEESSC-----------------G-----------GGGHHH-----------HHHHEEEEEEEE
T ss_pred             -------CCCCCcCEEEECCcC-----------------H-----------HHHHHH-----------HHHhCCCCCEEE
Confidence                   234679999999871                 1           234555           788999999999


Q ss_pred             EEecCCCccccHHHHHHHHHHCCCcEEEec
Q psy17793        234 YCTCSLSVEENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       234 ysTCS~~~eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                      +.+.+.  +..+ .+...+++. ++..+..
T Consensus       196 ~~~~~~--~~~~-~~~~~l~~~-gf~~~~~  221 (258)
T 2pwy_A          196 AYLPNI--TQVL-ELVRAAEAH-PFRLERV  221 (258)
T ss_dssp             EEESCH--HHHH-HHHHHHTTT-TEEEEEE
T ss_pred             EEeCCH--HHHH-HHHHHHHHC-CCceEEE
Confidence            876442  2222 233334443 5655443

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.43  E-value=6.3e-13  Score=123.57  Aligned_cols=122  Identities=16%  Similarity=0.192  Sum_probs=99.6

Q ss_pred             EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793         69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI  148 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~  148 (397)
                      -|++++..+...+++.++.+|||+|||+|..+..++...   .+|+++|+|+.+++.++++++..|+.++.+..+|+..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~   81 (239)
T 1xxl_A            5 HHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL   81 (239)
T ss_dssp             -CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC
T ss_pred             ccCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC
Confidence            477888889999999999999999999999999888753   59999999999999999999999998999999998765


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                      .           +..++||+|++.-.          ...+.  +.           ..+|.+           +.++|||
T Consensus        82 ~-----------~~~~~fD~v~~~~~----------l~~~~--~~-----------~~~l~~-----------~~~~Lkp  116 (239)
T 1xxl_A           82 P-----------FPDDSFDIITCRYA----------AHHFS--DV-----------RKAVRE-----------VARVLKQ  116 (239)
T ss_dssp             C-----------SCTTCEEEEEEESC----------GGGCS--CH-----------HHHHHH-----------HHHHEEE
T ss_pred             C-----------CCCCcEEEEEECCc----------hhhcc--CH-----------HHHHHH-----------HHHHcCC
Confidence            3           34578999998422          11111  11           456777           8899999


Q ss_pred             CcEEEEEecC
Q psy17793        229 DGILVYCTCS  238 (397)
Q Consensus       229 gG~lvysTCS  238 (397)
                      ||++++++..
T Consensus       117 gG~l~~~~~~  126 (239)
T 1xxl_A          117 DGRFLLVDHY  126 (239)
T ss_dssp             EEEEEEEEEC
T ss_pred             CcEEEEEEcC
Confidence            9999997654

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.43  E-value=4.5e-13  Score=131.82  Aligned_cols=101  Identities=19%  Similarity=0.304  Sum_probs=87.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .+|++|||+|||+|..+.. |.   +..+|+|+|+|+.+++.+++|++.+|+ .+++++++|+..+             .
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~-------------~  256 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV-------------D  256 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC-------------C
T ss_pred             CCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh-------------c
Confidence            5789999999999999988 66   467999999999999999999999998 5799999999865             2


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS  240 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~  240 (397)
                       +.||+|++|||.++                           .+++..           +.++|+|||.+++++|+..
T Consensus       257 -~~fD~Vi~dpP~~~---------------------------~~~l~~-----------~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          257 -VKGNRVIMNLPKFA---------------------------HKFIDK-----------ALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             -CCEEEEEECCTTTG---------------------------GGGHHH-----------HHHHEEEEEEEEEEEEESS
T ss_pred             -CCCcEEEECCcHhH---------------------------HHHHHH-----------HHHHcCCCCEEEEEEeecC
Confidence             57999999999432                           144555           8889999999999999876

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.42  E-value=4.8e-12  Score=115.57  Aligned_cols=141  Identities=12%  Similarity=0.132  Sum_probs=100.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..+..+|... +...|+|+|+|+.+++.+++++++.|+.++.++.+|+..+..         .+..
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~  109 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD---------YFED  109 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG---------TSCT
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh---------hcCC
Confidence            467899999999999999999875 467999999999999999999999999899999999987521         1345


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccc
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE  243 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eE  243 (397)
                      ++||.|++++|.      |.......    ...   +  .+..+|+.           +.++|||||.++++|-.   .+
T Consensus       110 ~~~D~i~~~~~~------~~~~~~~~----~~~---~--~~~~~l~~-----------~~~~LkpgG~l~~~~~~---~~  160 (214)
T 1yzh_A          110 GEIDRLYLNFSD------PWPKKRHE----KRR---L--TYKTFLDT-----------FKRILPENGEIHFKTDN---RG  160 (214)
T ss_dssp             TCCSEEEEESCC------CCCSGGGG----GGS---T--TSHHHHHH-----------HHHHSCTTCEEEEEESC---HH
T ss_pred             CCCCEEEEECCC------Cccccchh----hhc---c--CCHHHHHH-----------HHHHcCCCcEEEEEeCC---HH
Confidence            689999999872      11110000    000   0  13567777           88999999999987532   11


Q ss_pred             cHHHHHHHHHHCCCcEEEecC
Q psy17793        244 NEAVIAWILHRHPEVELVQTL  264 (397)
Q Consensus       244 nE~vV~~~L~~~~~~~l~~~~  264 (397)
                      .-+.+...++++ +++.+.+.
T Consensus       161 ~~~~~~~~~~~~-g~~~~~~~  180 (214)
T 1yzh_A          161 LFEYSLVSFSQY-GMKLNGVW  180 (214)
T ss_dssp             HHHHHHHHHHHH-TCEEEEEE
T ss_pred             HHHHHHHHHHHC-CCeeeecc
Confidence            222334445555 47666544

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.41  E-value=7e-13  Score=120.69  Aligned_cols=109  Identities=10%  Similarity=0.099  Sum_probs=85.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      ++.+|||+|||+|..+..++..  ...+|+|+|+|+.+++.+++|++.+++.+++++++|+.....          ...+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~--~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~----------~~~~  121 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA----------QKGT  121 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS----------SCCC
T ss_pred             CCCeEEEeCCCcCHHHHHHHhc--CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh----------hcCC
Confidence            6789999999999999987774  345999999999999999999999999889999999876421          2346


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccc--cccccCCcEEEEEecCCC
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQG--IPLLKKDGILVYCTCSLS  240 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a--~~lLkpgG~lvysTCS~~  240 (397)
                      +||+|++|||+.. +         .   .           .++++.           .  .++|||||++++++|+..
T Consensus       122 ~fD~V~~~~p~~~-~---------~---~-----------~~~l~~-----------l~~~~~L~pgG~l~i~~~~~~  164 (202)
T 2fpo_A          122 PHNIVFVDPPFRR-G---------L---L-----------EETINL-----------LEDNGWLADEALIYVESEVEN  164 (202)
T ss_dssp             CEEEEEECCSSST-T---------T---H-----------HHHHHH-----------HHHTTCEEEEEEEEEEEEGGG
T ss_pred             CCCEEEECCCCCC-C---------c---H-----------HHHHHH-----------HHhcCccCCCcEEEEEECCCc
Confidence            8999999999421 0         0   1           122333           3  357999999999988643

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.41  E-value=8.9e-13  Score=122.46  Aligned_cols=127  Identities=15%  Similarity=0.264  Sum_probs=100.3

Q ss_pred             CcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEc
Q psy17793         65 SMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVY  143 (397)
Q Consensus        65 g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~  143 (397)
                      +.-.++.....++..++...++.+|||+|||+|..+..+|... +.++|+++|+++.+++.+++++++.|+. +|+++.+
T Consensus        51 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~  129 (232)
T 3ntv_A           51 EVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEG  129 (232)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred             CCCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            3334566666777777777788999999999999999999853 4689999999999999999999999986 7999999


Q ss_pred             ccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q psy17793        144 DSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI  223 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~  223 (397)
                      |+.....         ....++||+|++|+++..               .           ..+++.           +.
T Consensus       130 d~~~~~~---------~~~~~~fD~V~~~~~~~~---------------~-----------~~~l~~-----------~~  163 (232)
T 3ntv_A          130 NALEQFE---------NVNDKVYDMIFIDAAKAQ---------------S-----------KKFFEI-----------YT  163 (232)
T ss_dssp             CGGGCHH---------HHTTSCEEEEEEETTSSS---------------H-----------HHHHHH-----------HG
T ss_pred             CHHHHHH---------hhccCCccEEEEcCcHHH---------------H-----------HHHHHH-----------HH
Confidence            9977531         012478999999986321               1           446677           89


Q ss_pred             ccccCCcEEEEEecC
Q psy17793        224 PLLKKDGILVYCTCS  238 (397)
Q Consensus       224 ~lLkpgG~lvysTCS  238 (397)
                      ++|||||+|++...-
T Consensus       164 ~~LkpgG~lv~d~~~  178 (232)
T 3ntv_A          164 PLLKHQGLVITDNVL  178 (232)
T ss_dssp             GGEEEEEEEEEECTT
T ss_pred             HhcCCCeEEEEeeCC
Confidence            999999999986443

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.40  E-value=1.2e-12  Score=124.24  Aligned_cols=118  Identities=20%  Similarity=0.236  Sum_probs=96.1

Q ss_pred             chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-C--CCcEEEEEccccc
Q psy17793         71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL-Q--LSSIQTHVYDSTR  147 (397)
Q Consensus        71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~-g--~~~v~~~~~D~~~  147 (397)
                      ......+...+++.++++|||+|||+|..+.+++..+++.++|+++|+++.+++.++++++.. |  ..++++...|+..
T Consensus        85 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~  164 (280)
T 1i9g_A           85 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD  164 (280)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence            334445556778899999999999999999999997766789999999999999999999998 7  6789999999876


Q ss_pred             ccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793        148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK  227 (397)
Q Consensus       148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk  227 (397)
                      ..           +..+.||+|++|+|.                 .           .++|++           +.++||
T Consensus       165 ~~-----------~~~~~~D~v~~~~~~-----------------~-----------~~~l~~-----------~~~~L~  194 (280)
T 1i9g_A          165 SE-----------LPDGSVDRAVLDMLA-----------------P-----------WEVLDA-----------VSRLLV  194 (280)
T ss_dssp             CC-----------CCTTCEEEEEEESSC-----------------G-----------GGGHHH-----------HHHHEE
T ss_pred             cC-----------CCCCceeEEEECCcC-----------------H-----------HHHHHH-----------HHHhCC
Confidence            52           234679999998871                 1           134556           888999


Q ss_pred             CCcEEEEEecC
Q psy17793        228 KDGILVYCTCS  238 (397)
Q Consensus       228 pgG~lvysTCS  238 (397)
                      |||++++++.+
T Consensus       195 pgG~l~~~~~~  205 (280)
T 1i9g_A          195 AGGVLMVYVAT  205 (280)
T ss_dssp             EEEEEEEEESS
T ss_pred             CCCEEEEEeCC
Confidence            99999998654

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.40  E-value=1.4e-12  Score=115.07  Aligned_cols=111  Identities=18%  Similarity=0.228  Sum_probs=86.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ..++.+|||+|||+|..+..++..  +..+|+|+|+|+.+++.++++++.+++. +++++.+|+....          +.
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~   96 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI----------DC   96 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH----------HH
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH----------Hh
Confidence            567889999999999999998885  4579999999999999999999999985 6999999987642          12


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccc--ccccCCcEEEEEecCC
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI--PLLKKDGILVYCTCSL  239 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~--~lLkpgG~lvysTCS~  239 (397)
                      ..+.||+|++|||+.                 ....       .++++.           ..  ++|||||.+++++++-
T Consensus        97 ~~~~fD~i~~~~~~~-----------------~~~~-------~~~~~~-----------l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A           97 LTGRFDLVFLDPPYA-----------------KETI-------VATIEA-----------LAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             BCSCEEEEEECCSSH-----------------HHHH-------HHHHHH-----------HHHTTCEEEEEEEEEEEETT
T ss_pred             hcCCCCEEEECCCCC-----------------cchH-------HHHHHH-----------HHhCCCcCCCcEEEEEECCc
Confidence            335799999999831                 0111       233333           33  8899999999987764


Q ss_pred             C
Q psy17793        240 S  240 (397)
Q Consensus       240 ~  240 (397)
                      .
T Consensus       142 ~  142 (177)
T 2esr_A          142 V  142 (177)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.40  E-value=9.9e-13  Score=127.26  Aligned_cols=116  Identities=12%  Similarity=0.138  Sum_probs=93.3

Q ss_pred             HHHhccC-CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccch
Q psy17793         76 LAGHYLD-VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQ  153 (397)
Q Consensus        76 l~~~~L~-~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~  153 (397)
                      .+...+. +.++.+|||+|||+|..+..++...  +.+|+|+|+++.+++.++++++..|+. ++++..+|+..+.    
T Consensus       107 ~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----  180 (312)
T 3vc1_A          107 FLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP----  180 (312)
T ss_dssp             HHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC----
T ss_pred             HHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC----
Confidence            3445565 7889999999999999999999875  468999999999999999999999986 6999999998752    


Q ss_pred             hhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793        154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV  233 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv  233 (397)
                             +..++||+|++.-.                  + ..+ .    ..++|++           +.++|||||+++
T Consensus       181 -------~~~~~fD~V~~~~~------------------l-~~~-~----~~~~l~~-----------~~~~LkpgG~l~  218 (312)
T 3vc1_A          181 -------FDKGAVTASWNNES------------------T-MYV-D----LHDLFSE-----------HSRFLKVGGRYV  218 (312)
T ss_dssp             -------CCTTCEEEEEEESC------------------G-GGS-C----HHHHHHH-----------HHHHEEEEEEEE
T ss_pred             -------CCCCCEeEEEECCc------------------h-hhC-C----HHHHHHH-----------HHHHcCCCcEEE
Confidence                   34578999997211                  0 111 1    3677888           999999999999


Q ss_pred             EEecCC
Q psy17793        234 YCTCSL  239 (397)
Q Consensus       234 ysTCS~  239 (397)
                      +++...
T Consensus       219 ~~~~~~  224 (312)
T 3vc1_A          219 TITGCW  224 (312)
T ss_dssp             EEEEEE
T ss_pred             EEEccc
Confidence            987543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.40  E-value=1.4e-12  Score=121.49  Aligned_cols=132  Identities=23%  Similarity=0.226  Sum_probs=98.4

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ...++.+|||+|||+|..+..+|... ..++|+|+|+|+.+++.++++++++|+++|+++++|+..+...        ..
T Consensus        67 ~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--------~~  137 (240)
T 1xdz_A           67 DFNQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR--------KD  137 (240)
T ss_dssp             CGGGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC--------TT
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc--------cc
Confidence            34578899999999999999998753 4679999999999999999999999998899999998765210        00


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV  241 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~  241 (397)
                      ..++||+|+++.-              .  ++           ..+++.           +.++|||||++++..+....
T Consensus       138 ~~~~fD~V~~~~~--------------~--~~-----------~~~l~~-----------~~~~LkpgG~l~~~~g~~~~  179 (240)
T 1xdz_A          138 VRESYDIVTARAV--------------A--RL-----------SVLSEL-----------CLPLVKKNGLFVALKAASAE  179 (240)
T ss_dssp             TTTCEEEEEEECC--------------S--CH-----------HHHHHH-----------HGGGEEEEEEEEEEECC-CH
T ss_pred             ccCCccEEEEecc--------------C--CH-----------HHHHHH-----------HHHhcCCCCEEEEEeCCCch
Confidence            1468999998542              1  11           556777           89999999999998776554


Q ss_pred             cccHHHHHHHHHHCCCcEEEe
Q psy17793        242 EENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       242 eEnE~vV~~~L~~~~~~~l~~  262 (397)
                      +|-++ +...++.+ ++++..
T Consensus       180 ~~~~~-~~~~l~~~-g~~~~~  198 (240)
T 1xdz_A          180 EELNA-GKKAITTL-GGELEN  198 (240)
T ss_dssp             HHHHH-HHHHHHHT-TEEEEE
T ss_pred             HHHHH-HHHHHHHc-CCeEeE
Confidence            44333 33455665 455543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.40  E-value=1.3e-12  Score=130.65  Aligned_cols=128  Identities=11%  Similarity=0.088  Sum_probs=99.1

Q ss_pred             chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC---cEEEEEccccc
Q psy17793         71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS---SIQTHVYDSTR  147 (397)
Q Consensus        71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~---~v~~~~~D~~~  147 (397)
                      |..+.++...+...++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++|++.+|+.   ++++...|+..
T Consensus       208 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~  286 (375)
T 4dcm_A          208 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS  286 (375)
T ss_dssp             CHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT
T ss_pred             cHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc
Confidence            4556677778888888999999999999999999874 4679999999999999999999999976   48889999876


Q ss_pred             ccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793        148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK  227 (397)
Q Consensus       148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk  227 (397)
                      .            +..++||+|++|||.....                .+..  ....++++.           +.++||
T Consensus       287 ~------------~~~~~fD~Ii~nppfh~~~----------------~~~~--~~~~~~l~~-----------~~~~Lk  325 (375)
T 4dcm_A          287 G------------VEPFRFNAVLCNPPFHQQH----------------ALTD--NVAWEMFHH-----------ARRCLK  325 (375)
T ss_dssp             T------------CCTTCEEEEEECCCC-----------------------C--CHHHHHHHH-----------HHHHEE
T ss_pred             c------------CCCCCeeEEEECCCcccCc----------------ccCH--HHHHHHHHH-----------HHHhCC
Confidence            4            2456899999999953210                0000  011357788           999999


Q ss_pred             CCcEEEEEecCCC
Q psy17793        228 KDGILVYCTCSLS  240 (397)
Q Consensus       228 pgG~lvysTCS~~  240 (397)
                      |||++++++.+..
T Consensus       326 pgG~l~iv~n~~~  338 (375)
T 4dcm_A          326 INGELYIVANRHL  338 (375)
T ss_dssp             EEEEEEEEEETTS
T ss_pred             CCcEEEEEEECCc
Confidence            9999999765433

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.40  E-value=1.9e-12  Score=122.09  Aligned_cols=132  Identities=20%  Similarity=0.178  Sum_probs=98.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ..++.+|||+|||+|..++.+|... +..+|+++|+|+.+++.+++|++++|+.||+++++|+..+...        ...
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~--------~~~  148 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLARE--------AGH  148 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTS--------TTT
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcc--------ccc
Confidence            3578899999999999999999875 5679999999999999999999999999999999998765310        012


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE  242 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e  242 (397)
                      .++||+|++.+-              .  ++           ..+++.           +.++|||||++++..+....+
T Consensus       149 ~~~fD~I~s~a~--------------~--~~-----------~~ll~~-----------~~~~LkpgG~l~~~~g~~~~~  190 (249)
T 3g89_A          149 REAYARAVARAV--------------A--PL-----------CVLSEL-----------LLPFLEVGGAAVAMKGPRVEE  190 (249)
T ss_dssp             TTCEEEEEEESS--------------C--CH-----------HHHHHH-----------HGGGEEEEEEEEEEECSCCHH
T ss_pred             CCCceEEEECCc--------------C--CH-----------HHHHHH-----------HHHHcCCCeEEEEEeCCCcHH
Confidence            368999998431              0  11           456667           899999999999887764444


Q ss_pred             ccHHHHHHHHHHCCCcEEEec
Q psy17793        243 ENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       243 EnE~vV~~~L~~~~~~~l~~~  263 (397)
                      |-+ .+...++.. ++++..+
T Consensus       191 e~~-~~~~~l~~~-G~~~~~~  209 (249)
T 3g89_A          191 ELA-PLPPALERL-GGRLGEV  209 (249)
T ss_dssp             HHT-THHHHHHHH-TEEEEEE
T ss_pred             HHH-HHHHHHHHc-CCeEEEE
Confidence            433 234445555 4555543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.40  E-value=2e-12  Score=118.82  Aligned_cols=109  Identities=23%  Similarity=0.328  Sum_probs=82.9

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhh
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      +.+++|++|||+|||+|..+.++|...+ .++|+|+|+|+.+++.+.+++++.  .|+.++.+|+......       .+
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~-------~~  122 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKY-------SG  122 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGT-------TT
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhh-------cc
Confidence            4567899999999999999999999875 689999999999998887777654  4788888888764110       01


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      + .++||.|++|.+              .    +..       ...++++           +.++|||||+++++.
T Consensus       123 ~-~~~fD~V~~~~~--------------~----~~~-------~~~~l~~-----------~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          123 I-VEKVDLIYQDIA--------------Q----KNQ-------IEILKAN-----------AEFFLKEKGEVVIMV  161 (210)
T ss_dssp             T-CCCEEEEEECCC--------------S----TTH-------HHHHHHH-----------HHHHEEEEEEEEEEE
T ss_pred             c-ccceeEEEEecc--------------C----hhH-------HHHHHHH-----------HHHHhCCCCEEEEEE
Confidence            2 368999999743              0    100       1234677           889999999999984

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.40  E-value=1.1e-12  Score=121.61  Aligned_cols=92  Identities=17%  Similarity=0.175  Sum_probs=77.1

Q ss_pred             hHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEccccccccc
Q psy17793         73 PSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTS  151 (397)
Q Consensus        73 ~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~  151 (397)
                      ...++..+....++.+|||+|||+|..+..++..   ..+|+|+|+|+.+++.++++++++|+ .+++++++|+..+.  
T Consensus        66 ~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--  140 (241)
T 3gdh_A           66 AEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA--  140 (241)
T ss_dssp             HHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG--
T ss_pred             HHHHHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc--
Confidence            3444444444557899999999999999999984   37999999999999999999999998 57999999997762  


Q ss_pred             chhhHHHhhhcccCccEEEEcCCCCCCC
Q psy17793        152 SQIDIERMKLQKESFDRILLDAPCSGFG  179 (397)
Q Consensus       152 ~~~d~~~~~~~~~~fD~Il~DpPCSg~G  179 (397)
                                ..++||+|++||||.+.+
T Consensus       141 ----------~~~~~D~v~~~~~~~~~~  158 (241)
T 3gdh_A          141 ----------SFLKADVVFLSPPWGGPD  158 (241)
T ss_dssp             ----------GGCCCSEEEECCCCSSGG
T ss_pred             ----------ccCCCCEEEECCCcCCcc
Confidence                      346899999999998744

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.40  E-value=1.1e-12  Score=123.53  Aligned_cols=129  Identities=18%  Similarity=0.198  Sum_probs=98.4

Q ss_pred             EEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccc
Q psy17793         68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDST  146 (397)
Q Consensus        68 ~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~  146 (397)
                      .++.....++..++...++.+|||+|||+|..+..+|..+.+.++|+++|+|+.+++.+++++++.|+. +|+++.+|+.
T Consensus        62 ~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~  141 (247)
T 1sui_A           62 TTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPAL  141 (247)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred             CcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHH
Confidence            345666666666666667789999999999999999998765789999999999999999999999984 6999999987


Q ss_pred             cccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q psy17793        147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLL  226 (397)
Q Consensus       147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lL  226 (397)
                      .....    .....+..++||+|++|+++..               .           ..+++.           +.++|
T Consensus       142 ~~l~~----l~~~~~~~~~fD~V~~d~~~~~---------------~-----------~~~l~~-----------~~~~L  180 (247)
T 1sui_A          142 PVLDE----MIKDEKNHGSYDFIFVDADKDN---------------Y-----------LNYHKR-----------LIDLV  180 (247)
T ss_dssp             HHHHH----HHHSGGGTTCBSEEEECSCSTT---------------H-----------HHHHHH-----------HHHHB
T ss_pred             HHHHH----HHhccCCCCCEEEEEEcCchHH---------------H-----------HHHHHH-----------HHHhC
Confidence            65211    0000001468999999986210               1           345666           88899


Q ss_pred             cCCcEEEEEec
Q psy17793        227 KKDGILVYCTC  237 (397)
Q Consensus       227 kpgG~lvysTC  237 (397)
                      ||||+|++...
T Consensus       181 kpGG~lv~d~~  191 (247)
T 1sui_A          181 KVGGVIGYDNT  191 (247)
T ss_dssp             CTTCCEEEECT
T ss_pred             CCCeEEEEecC
Confidence            99999998753

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.40  E-value=4.2e-13  Score=122.18  Aligned_cols=123  Identities=15%  Similarity=0.132  Sum_probs=96.3

Q ss_pred             EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEccccc
Q psy17793         69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTR  147 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~  147 (397)
                      ++.....+...++...++.+|||+|||+|..+..++..+...++|+++|+|+.+++.+++++++.++. +++++.+|+..
T Consensus        40 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  119 (210)
T 3c3p_A           40 VDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLG  119 (210)
T ss_dssp             CCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHH
Confidence            45555555555555556789999999999999999997754789999999999999999999999986 49999999876


Q ss_pred             ccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793        148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK  227 (397)
Q Consensus       148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk  227 (397)
                      ...          ...+ ||+|++|+++..               .           ..+++.           +.++||
T Consensus       120 ~~~----------~~~~-fD~v~~~~~~~~---------------~-----------~~~l~~-----------~~~~Lk  151 (210)
T 3c3p_A          120 IAA----------GQRD-IDILFMDCDVFN---------------G-----------ADVLER-----------MNRCLA  151 (210)
T ss_dssp             HHT----------TCCS-EEEEEEETTTSC---------------H-----------HHHHHH-----------HGGGEE
T ss_pred             Hhc----------cCCC-CCEEEEcCChhh---------------h-----------HHHHHH-----------HHHhcC
Confidence            421          1235 999999865211               1           456677           899999


Q ss_pred             CCcEEEEEecCC
Q psy17793        228 KDGILVYCTCSL  239 (397)
Q Consensus       228 pgG~lvysTCS~  239 (397)
                      |||+|++.++.+
T Consensus       152 pgG~lv~~~~~~  163 (210)
T 3c3p_A          152 KNALLIAVNALR  163 (210)
T ss_dssp             EEEEEEEESSSS
T ss_pred             CCeEEEEECccc
Confidence            999999986654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.40  E-value=1.1e-12  Score=118.98  Aligned_cols=98  Identities=19%  Similarity=0.248  Sum_probs=83.2

Q ss_pred             CCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEE
Q psy17793         63 DSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV  142 (397)
Q Consensus        63 ~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~  142 (397)
                      ..|.++.+......+...+.+.++++|||+|||+|..+..++..   .++|+++|+|+.+++.++++++++|+.++++..
T Consensus        55 ~~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~  131 (210)
T 3lbf_A           55 GQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRH  131 (210)
T ss_dssp             TTSCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCCCEeCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEE
Confidence            34556666666666777888899999999999999999999987   479999999999999999999999999999999


Q ss_pred             cccccccccchhhHHHhhhcccCccEEEEcCC
Q psy17793        143 YDSTRINTSSQIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       143 ~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                      +|+....           ...++||+|+++..
T Consensus       132 ~d~~~~~-----------~~~~~~D~i~~~~~  152 (210)
T 3lbf_A          132 GDGWQGW-----------QARAPFDAIIVTAA  152 (210)
T ss_dssp             SCGGGCC-----------GGGCCEEEEEESSB
T ss_pred             CCcccCC-----------ccCCCccEEEEccc
Confidence            9997753           23468999999765

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.38  E-value=6.9e-13  Score=128.34  Aligned_cols=138  Identities=17%  Similarity=0.149  Sum_probs=101.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh--C--CCcEEEEEcccccccccchhhHHHh
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL--Q--LSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~--g--~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      ..+.+|||+|||+|+.+..++... +..+|+++|+|+.+++.+++++..+  +  ..+++++.+|+.....         
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~---------  158 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR---------  158 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG---------
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh---------
Confidence            345799999999999999988753 4579999999999999999998762  2  3579999999876531         


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC-
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS-  238 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS-  238 (397)
                       ...++||+|++|+|+...|..             ..   +  .+.++++.           +.++|||||++++.+|+ 
T Consensus       159 -~~~~~fD~Ii~d~~~~~~~~~-------------~~---l--~~~~~l~~-----------~~~~LkpgG~lv~~~~~~  208 (296)
T 1inl_A          159 -KFKNEFDVIIIDSTDPTAGQG-------------GH---L--FTEEFYQA-----------CYDALKEDGVFSAETEDP  208 (296)
T ss_dssp             -GCSSCEEEEEEEC--------------------------C--CSHHHHHH-----------HHHHEEEEEEEEEECCCT
T ss_pred             -hCCCCceEEEEcCCCcccCch-------------hh---h--hHHHHHHH-----------HHHhcCCCcEEEEEccCc
Confidence             134679999999986322210             00   0  12566777           88999999999999988 


Q ss_pred             -CCccccHHHHHHHHHHCCCcEEE
Q psy17793        239 -LSVEENEAVIAWILHRHPEVELV  261 (397)
Q Consensus       239 -~~~eEnE~vV~~~L~~~~~~~l~  261 (397)
                       +..++...+++.+.+.++.+...
T Consensus       209 ~~~~~~~~~~~~~l~~~F~~v~~~  232 (296)
T 1inl_A          209 FYDIGWFKLAYRRISKVFPITRVY  232 (296)
T ss_dssp             TTTHHHHHHHHHHHHHHCSEEEEE
T ss_pred             ccCHHHHHHHHHHHHHHCCceEEE
Confidence             45677777888887777655443

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.38  E-value=9.4e-13  Score=125.20  Aligned_cols=123  Identities=20%  Similarity=0.274  Sum_probs=91.4

Q ss_pred             EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccc
Q psy17793         69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDST  146 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~  146 (397)
                      +++....++...  +++|.+|||+|||+|..+..++.... ++.+|+|+|+|+.+++.++++++..+.. +|+++++|+.
T Consensus        56 ~~~~i~~l~~~~--~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~  133 (261)
T 4gek_A           56 IISMIGMLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR  133 (261)
T ss_dssp             HHHHHHHHHHHH--CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTT
T ss_pred             HHHHHHHHHHHh--CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccc
Confidence            344444444444  46899999999999999999998764 3459999999999999999999988865 6999999998


Q ss_pred             cccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q psy17793        147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLL  226 (397)
Q Consensus       147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lL  226 (397)
                      ++.             .++||+|++.--          .....    ...       ...+|++           +.+.|
T Consensus       134 ~~~-------------~~~~d~v~~~~~----------l~~~~----~~~-------~~~~l~~-----------i~~~L  168 (261)
T 4gek_A          134 DIA-------------IENASMVVLNFT----------LQFLE----PSE-------RQALLDK-----------IYQGL  168 (261)
T ss_dssp             TCC-------------CCSEEEEEEESC----------GGGSC----HHH-------HHHHHHH-----------HHHHE
T ss_pred             ccc-------------ccccccceeeee----------eeecC----chh-------HhHHHHH-----------HHHHc
Confidence            762             256999987210          00011    111       1457888           99999


Q ss_pred             cCCcEEEEEecC
Q psy17793        227 KKDGILVYCTCS  238 (397)
Q Consensus       227 kpgG~lvysTCS  238 (397)
                      ||||+|+.+.-.
T Consensus       169 kpGG~lii~e~~  180 (261)
T 4gek_A          169 NPGGALVLSEKF  180 (261)
T ss_dssp             EEEEEEEEEEEB
T ss_pred             CCCcEEEEEecc
Confidence            999999988543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.38  E-value=3.9e-12  Score=123.03  Aligned_cols=107  Identities=11%  Similarity=0.119  Sum_probs=86.4

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      .++++++|++|||+|||+|+.|..+++.. .+++|+|+|+|+.+++.+++++++.|+.+|++.++|+..+          
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l----------  184 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVI----------  184 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGG----------
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhC----------
Confidence            35678999999999999999886554443 3679999999999999999999999998899999999765          


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                         ..++||+|+++.-     .        .  +           ..+++++           +.+.|||||+|+..+
T Consensus       185 ---~d~~FDvV~~~a~-----~--------~--d-----------~~~~l~e-----------l~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          185 ---DGLEFDVLMVAAL-----A--------E--P-----------KRRVFRN-----------IHRYVDTETRIIYRT  222 (298)
T ss_dssp             ---GGCCCSEEEECTT-----C--------S--C-----------HHHHHHH-----------HHHHCCTTCEEEEEE
T ss_pred             ---CCCCcCEEEECCC-----c--------c--C-----------HHHHHHH-----------HHHHcCCCcEEEEEc
Confidence               2468999998432     0        0  0           1456777           889999999999863

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.37  E-value=4.2e-12  Score=119.68  Aligned_cols=112  Identities=19%  Similarity=0.241  Sum_probs=91.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      +.++.+|||+|||+|..+..++..  ..++|+|+|+|+.+++.++++++..|+.+ +++...|+..+.           +
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~  110 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP-----------F  110 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----------C
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC-----------C
Confidence            678899999999999999999886  45699999999999999999999999864 999999997753           3


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV  241 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~  241 (397)
                      ..++||+|++....                   ..+ ..    .++|++           +.++|||||+++++++++..
T Consensus       111 ~~~~fD~i~~~~~~-------------------~~~-~~----~~~l~~-----------~~~~LkpgG~l~~~~~~~~~  155 (267)
T 3kkz_A          111 RNEELDLIWSEGAI-------------------YNI-GF----ERGLNE-----------WRKYLKKGGYLAVSECSWFT  155 (267)
T ss_dssp             CTTCEEEEEESSCG-------------------GGT-CH----HHHHHH-----------HGGGEEEEEEEEEEEEEESS
T ss_pred             CCCCEEEEEEcCCc-------------------eec-CH----HHHHHH-----------HHHHcCCCCEEEEEEeeecC
Confidence            45789999985441                   111 11    556777           99999999999999876543


Q ss_pred             c
Q psy17793        242 E  242 (397)
Q Consensus       242 e  242 (397)
                      .
T Consensus       156 ~  156 (267)
T 3kkz_A          156 D  156 (267)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.37  E-value=3.5e-12  Score=112.90  Aligned_cols=116  Identities=19%  Similarity=0.238  Sum_probs=86.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ..++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.++++++.+++ ++++++.+|+......       .++
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~  112 (187)
T 2fhp_A           42 YFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQ-------FYE  112 (187)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH-------HHH
T ss_pred             hcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHH-------HHh
Confidence            357889999999999999988873  457999999999999999999999998 4799999998764210       112


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS  240 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~  240 (397)
                      ..++||+|++|||...          ..   .           ...+..         ..+.++|||||.+++++++-.
T Consensus       113 ~~~~fD~i~~~~~~~~----------~~---~-----------~~~~~~---------l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          113 EKLQFDLVLLDPPYAK----------QE---I-----------VSQLEK---------MLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             TTCCEEEEEECCCGGG----------CC---H-----------HHHHHH---------HHHTTCEEEEEEEEEEEETTC
T ss_pred             cCCCCCEEEECCCCCc----------hh---H-----------HHHHHH---------HHHhcccCCCCEEEEEeCCcc
Confidence            2568999999998320          00   1           111222         004789999999999988744

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.37  E-value=3.6e-13  Score=132.64  Aligned_cols=163  Identities=10%  Similarity=0.051  Sum_probs=108.8

Q ss_pred             CCcEEEechhHHHHHhcc----CCCCCCeEEEEcCCCChHHHHHHHHcCCC----cEEEEEeCCHHHHHHHHHHHHHhCC
Q psy17793         64 SSMGILQNLPSILAGHYL----DVQPGQKVLDMCAAPGNKLTHIALLMNDT----GTLIALDKSKPRVTKLEETIKKLQL  135 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L----~~~~g~~VLDlcagpG~kt~~lA~~~~~~----~~V~avD~s~~rl~~l~~n~~~~g~  135 (397)
                      .|.++..+....+++.++    .+.++.+|||.|||+|+.++.++..+...    ..|+|+|+++.+++.++.|+...|+
T Consensus       105 ~g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~  184 (344)
T 2f8l_A          105 VNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ  184 (344)
T ss_dssp             GGGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             cCcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC
Confidence            355555554444444443    56678899999999999999999876432    7899999999999999999999998


Q ss_pred             CcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhh
Q psy17793        136 SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFV  215 (397)
Q Consensus       136 ~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~  215 (397)
                       ++.+.++|+....            ....||+|++|||++.... .+....+.    ..........+..++.+     
T Consensus       185 -~~~i~~~D~l~~~------------~~~~fD~Ii~NPPfg~~~~-~~~~~~~~----~~~~~g~~~~~~~~l~~-----  241 (344)
T 2f8l_A          185 -KMTLLHQDGLANL------------LVDPVDVVISDLPVGYYPD-DENAKTFE----LCREEGHSFAHFLFIEQ-----  241 (344)
T ss_dssp             -CCEEEESCTTSCC------------CCCCEEEEEEECCCSEESC-HHHHTTST----TCCSSSCEEHHHHHHHH-----
T ss_pred             -CceEEECCCCCcc------------ccCCccEEEECCCCCCcCc-hhhhhhcc----ccCCCCcchHHHHHHHH-----
Confidence             6889999986542            3467999999999732110 00000000    00000111234567888     


Q ss_pred             ccccccccccccCCcEEEEEec-CCCccccHHHHHHHHHHC
Q psy17793        216 SLFDWQGIPLLKKDGILVYCTC-SLSVEENEAVIAWILHRH  255 (397)
Q Consensus       216 ~~~~~~a~~lLkpgG~lvysTC-S~~~eEnE~vV~~~L~~~  255 (397)
                            +.++|||||++++.+. ++...+.+..+...|.+.
T Consensus       242 ------~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~  276 (344)
T 2f8l_A          242 ------GMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKN  276 (344)
T ss_dssp             ------HHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHH
T ss_pred             ------HHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhC
Confidence                  9999999999988863 333344445555555443

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.37  E-value=4.6e-12  Score=111.95  Aligned_cols=139  Identities=13%  Similarity=0.119  Sum_probs=103.6

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRI  148 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~  148 (397)
                      ++.....+...+.+.++.+|||+|||+|..+..++...   .+|+++|+|+.+++.++++++.+++ .++.+...|+...
T Consensus        18 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   94 (192)
T 1l3i_A           18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA   94 (192)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh
Confidence            44444555566778899999999999999999888853   7999999999999999999999998 6799999988653


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                      ..           ..+.||+|+++.+..               +.           ..+++.           +.++|+|
T Consensus        95 ~~-----------~~~~~D~v~~~~~~~---------------~~-----------~~~l~~-----------~~~~l~~  126 (192)
T 1l3i_A           95 LC-----------KIPDIDIAVVGGSGG---------------EL-----------QEILRI-----------IKDKLKP  126 (192)
T ss_dssp             HT-----------TSCCEEEEEESCCTT---------------CH-----------HHHHHH-----------HHHTEEE
T ss_pred             cc-----------cCCCCCEEEECCchH---------------HH-----------HHHHHH-----------HHHhcCC
Confidence            10           114799999976510               11           456777           8899999


Q ss_pred             CcEEEEEecCCCccccHHHHHHHHHHCC-CcEEEe
Q psy17793        229 DGILVYCTCSLSVEENEAVIAWILHRHP-EVELVQ  262 (397)
Q Consensus       229 gG~lvysTCS~~~eEnE~vV~~~L~~~~-~~~l~~  262 (397)
                      ||.+++++++   .++...+..++++.+ .++...
T Consensus       127 gG~l~~~~~~---~~~~~~~~~~l~~~g~~~~~~~  158 (192)
T 1l3i_A          127 GGRIIVTAIL---LETKFEAMECLRDLGFDVNITE  158 (192)
T ss_dssp             EEEEEEEECB---HHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CcEEEEEecC---cchHHHHHHHHHHCCCceEEEE
Confidence            9999998775   233344555666653 334433

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.36  E-value=4.6e-12  Score=126.38  Aligned_cols=136  Identities=18%  Similarity=0.208  Sum_probs=101.1

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ..+ ..++.+|||+|||+|..+..+|... ..++|+|+|+|+.+++.+++|++.+|+ ++|++.++|+..+.        
T Consensus       212 ~~~-~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~--------  281 (373)
T 3tm4_A          212 ELA-ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS--------  281 (373)
T ss_dssp             HHH-TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG--------
T ss_pred             Hhh-cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC--------
Confidence            344 7789999999999999999988863 345899999999999999999999998 57999999998763        


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                         +..++||+|++|||+.-   +            ......+..+..++++.           +.++|  ||.++|.||
T Consensus       282 ---~~~~~fD~Ii~npPyg~---r------------~~~~~~~~~ly~~~~~~-----------l~r~l--~g~~~~i~~  330 (373)
T 3tm4_A          282 ---QYVDSVDFAISNLPYGL---K------------IGKKSMIPDLYMKFFNE-----------LAKVL--EKRGVFITT  330 (373)
T ss_dssp             ---GTCSCEEEEEEECCCC---------------------CCHHHHHHHHHHH-----------HHHHE--EEEEEEEES
T ss_pred             ---cccCCcCEEEECCCCCc---c------------cCcchhHHHHHHHHHHH-----------HHHHc--CCeEEEEEC
Confidence               23468999999999632   1            01112233445677777           77777  788888877


Q ss_pred             CCCccccHHHHHHHHHHCCCcEEEe
Q psy17793        238 SLSVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       238 S~~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                      +      .+.+...+++. +++...
T Consensus       331 ~------~~~~~~~~~~~-G~~~~~  348 (373)
T 3tm4_A          331 E------KKAIEEAIAEN-GFEIIH  348 (373)
T ss_dssp             C------HHHHHHHHHHT-TEEEEE
T ss_pred             C------HHHHHHHHHHc-CCEEEE
Confidence            3      34555666665 566554

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.36  E-value=1.4e-11  Score=114.82  Aligned_cols=125  Identities=17%  Similarity=0.225  Sum_probs=98.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      +.+|++|||+|||+|..++.+|.. +..++|+|+|+++.+++.+++|++++|+.+ |++..+|+....            
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l------------   79 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAF------------   79 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC------------
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhc------------
Confidence            457889999999999999998885 346799999999999999999999999975 999999986542            


Q ss_pred             cc-cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793        162 QK-ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS  240 (397)
Q Consensus       162 ~~-~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~  240 (397)
                      .. ..||.|++    .|.|              ...+       .++|..           +...|+++|++|++.-   
T Consensus        80 ~~~~~~D~Ivi----aG~G--------------g~~i-------~~Il~~-----------~~~~L~~~~~lVlq~~---  120 (225)
T 3kr9_A           80 EETDQVSVITI----AGMG--------------GRLI-------ARILEE-----------GLGKLANVERLILQPN---  120 (225)
T ss_dssp             CGGGCCCEEEE----EEEC--------------HHHH-------HHHHHH-----------TGGGCTTCCEEEEEES---
T ss_pred             ccCcCCCEEEE----cCCC--------------hHHH-------HHHHHH-----------HHHHhCCCCEEEEECC---
Confidence            22 26998886    1211              1112       567888           9999999999999743   


Q ss_pred             ccccHHHHHHHHHHCCCcEEEe
Q psy17793        241 VEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       241 ~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                        .+++.+..+|.++ +|.++.
T Consensus       121 --~~~~~vr~~L~~~-Gf~i~~  139 (225)
T 3kr9_A          121 --NREDDLRIWLQDH-GFQIVA  139 (225)
T ss_dssp             --SCHHHHHHHHHHT-TEEEEE
T ss_pred             --CCHHHHHHHHHHC-CCEEEE
Confidence              3677888888888 577765

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.36  E-value=1.8e-11  Score=107.38  Aligned_cols=134  Identities=16%  Similarity=0.158  Sum_probs=99.9

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRIN  149 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~  149 (397)
                      .+.....+...+...++.+|||+|||+|..+..++.   ...+|+++|+|+.+++.++++++.+|++++++...|+... 
T Consensus        20 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-   95 (183)
T 2yxd_A           20 KEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV-   95 (183)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH-
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc-
Confidence            333344555666778899999999999999998887   5679999999999999999999999998899999998653 


Q ss_pred             ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793        150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD  229 (397)
Q Consensus       150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg  229 (397)
                                 +..++||+|+++++  .           .   .           ..+++.           +.++  ||
T Consensus        96 -----------~~~~~~D~i~~~~~--~-----------~---~-----------~~~l~~-----------~~~~--~g  124 (183)
T 2yxd_A           96 -----------LDKLEFNKAFIGGT--K-----------N---I-----------EKIIEI-----------LDKK--KI  124 (183)
T ss_dssp             -----------GGGCCCSEEEECSC--S-----------C---H-----------HHHHHH-----------HHHT--TC
T ss_pred             -----------ccCCCCcEEEECCc--c-----------c---H-----------HHHHHH-----------HhhC--CC
Confidence                       23468999999876  0           1   1           334454           5555  99


Q ss_pred             cEEEEEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793        230 GILVYCTCSLSVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       230 G~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                      |.++++++.  + ++...+...+++++ +.+..
T Consensus       125 G~l~~~~~~--~-~~~~~~~~~l~~~g-~~~~~  153 (183)
T 2yxd_A          125 NHIVANTIV--L-ENAAKIINEFESRG-YNVDA  153 (183)
T ss_dssp             CEEEEEESC--H-HHHHHHHHHHHHTT-CEEEE
T ss_pred             CEEEEEecc--c-ccHHHHHHHHHHcC-CeEEE
Confidence            999999765  2 23334556667764 54443

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.35  E-value=5.9e-12  Score=115.58  Aligned_cols=140  Identities=10%  Similarity=0.099  Sum_probs=98.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..+..+|... +...|+|+|+|+.+++.+++++++.|+.|++++.+|+..+..         .+..
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~---------~~~~  106 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTD---------VFEP  106 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHH---------HCCT
T ss_pred             CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh---------hcCc
Confidence            457899999999999999999875 467999999999999999999999999999999999987521         1345


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccc
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE  243 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eE  243 (397)
                      ++||.|+++.|.      |.......    ...   +  .+..+|+.           +.++|||||.|+++|-.   .+
T Consensus       107 ~~~d~v~~~~~~------p~~~~~~~----~~r---l--~~~~~l~~-----------~~~~LkpgG~l~~~td~---~~  157 (213)
T 2fca_A          107 GEVKRVYLNFSD------PWPKKRHE----KRR---L--TYSHFLKK-----------YEEVMGKGGSIHFKTDN---RG  157 (213)
T ss_dssp             TSCCEEEEESCC------CCCSGGGG----GGS---T--TSHHHHHH-----------HHHHHTTSCEEEEEESC---HH
T ss_pred             CCcCEEEEECCC------CCcCcccc----ccc---c--CcHHHHHH-----------HHHHcCCCCEEEEEeCC---HH
Confidence            689999987652      11110000    000   0  13567788           89999999999998532   11


Q ss_pred             cHHHHHHHHHHCCCcEEEec
Q psy17793        244 NEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       244 nE~vV~~~L~~~~~~~l~~~  263 (397)
                      .-+.+...++++ +++....
T Consensus       158 ~~~~~~~~~~~~-g~~~~~~  176 (213)
T 2fca_A          158 LFEYSLKSFSEY-GLLLTYV  176 (213)
T ss_dssp             HHHHHHHHHHHH-TCEEEEE
T ss_pred             HHHHHHHHHHHC-CCccccc
Confidence            122333444554 4665543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.35  E-value=1.2e-11  Score=111.78  Aligned_cols=127  Identities=18%  Similarity=0.241  Sum_probs=94.6

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      .+.++.+|||+|||+|..+..++..  +..+|+|+|+|+.+++.++++++.+++ +++++.+|+..+             
T Consensus        46 ~~~~~~~vlD~g~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-------------  109 (207)
T 1wy7_A           46 GDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF-------------  109 (207)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC-------------
T ss_pred             CCCCcCEEEEeeCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHc-------------
Confidence            4567899999999999999998885  345899999999999999999999988 899999998764             


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV  241 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~  241 (397)
                      . .+||+|++|||+.-...        .             ...++|+.           +.+++  ||  +|+.| +.+
T Consensus       110 ~-~~~D~v~~~~p~~~~~~--------~-------------~~~~~l~~-----------~~~~l--~~--~~~~~-~~~  151 (207)
T 1wy7_A          110 N-SRVDIVIMNPPFGSQRK--------H-------------ADRPFLLK-----------AFEIS--DV--VYSIH-LAK  151 (207)
T ss_dssp             C-CCCSEEEECCCCSSSST--------T-------------TTHHHHHH-----------HHHHC--SE--EEEEE-ECC
T ss_pred             C-CCCCEEEEcCCCccccC--------C-------------chHHHHHH-----------HHHhc--Cc--EEEEE-eCC
Confidence            1 37999999999643210        0             01334555           55665  43  56666 335


Q ss_pred             cccHHHHHHHHHHCCCcEEEec
Q psy17793        242 EENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       242 eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                      .++.+.+..++++. ++++..+
T Consensus       152 ~~~~~~~~~~l~~~-g~~~~~~  172 (207)
T 1wy7_A          152 PEVRRFIEKFSWEH-GFVVTHR  172 (207)
T ss_dssp             HHHHHHHHHHHHHT-TEEEEEE
T ss_pred             cCCHHHHHHHHHHC-CCeEEEE
Confidence            66777788888877 4655443

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.35  E-value=2.2e-12  Score=118.62  Aligned_cols=126  Identities=14%  Similarity=0.174  Sum_probs=96.2

Q ss_pred             EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEccccc
Q psy17793         69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTR  147 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~  147 (397)
                      +......++..++...++.+|||+|||+|..+..+|..+.+.++|+++|+++.+++.+++++++.|+ .+++++.+|+..
T Consensus        53 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~  132 (229)
T 2avd_A           53 MTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE  132 (229)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHH
Confidence            3444445555556667788999999999999999998775578999999999999999999999998 469999999865


Q ss_pred             ccccchhhHHHhhhc--ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q psy17793        148 INTSSQIDIERMKLQ--KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPL  225 (397)
Q Consensus       148 ~~~~~~~d~~~~~~~--~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~l  225 (397)
                      ....       ....  .++||+|++|++.                   ...       ..+++.           +.++
T Consensus       133 ~~~~-------~~~~~~~~~~D~v~~d~~~-------------------~~~-------~~~l~~-----------~~~~  168 (229)
T 2avd_A          133 TLDE-------LLAAGEAGTFDVAVVDADK-------------------ENC-------SAYYER-----------CLQL  168 (229)
T ss_dssp             HHHH-------HHHTTCTTCEEEEEECSCS-------------------TTH-------HHHHHH-----------HHHH
T ss_pred             HHHH-------HHhcCCCCCccEEEECCCH-------------------HHH-------HHHHHH-----------HHHH
Confidence            4211       0001  1579999999871                   101       345666           8889


Q ss_pred             ccCCcEEEEEecC
Q psy17793        226 LKKDGILVYCTCS  238 (397)
Q Consensus       226 LkpgG~lvysTCS  238 (397)
                      |||||.+++..+.
T Consensus       169 L~pgG~lv~~~~~  181 (229)
T 2avd_A          169 LRPGGILAVLRVL  181 (229)
T ss_dssp             EEEEEEEEEECCS
T ss_pred             cCCCeEEEEECCC
Confidence            9999999997654

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.35  E-value=1e-11  Score=115.83  Aligned_cols=114  Identities=15%  Similarity=0.193  Sum_probs=91.5

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHH
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      +..+.++.+|||+|||+|..+..++...+  ++|+|+|+|+.+++.++++++..|+.+ +++..+|+..+.         
T Consensus        41 l~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------  109 (257)
T 3f4k_A           41 INELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP---------  109 (257)
T ss_dssp             SCCCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS---------
T ss_pred             HhcCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC---------
Confidence            33567889999999999999999999752  499999999999999999999999876 999999997653         


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                        +..++||+|++.-...          ...   .           .++|++           +.++|||||++++++++
T Consensus       110 --~~~~~fD~v~~~~~l~----------~~~---~-----------~~~l~~-----------~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A          110 --FQNEELDLIWSEGAIY----------NIG---F-----------ERGMNE-----------WSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             --SCTTCEEEEEEESCSC----------CCC---H-----------HHHHHH-----------HHTTEEEEEEEEEEEEE
T ss_pred             --CCCCCEEEEEecChHh----------hcC---H-----------HHHHHH-----------HHHHcCCCcEEEEEEee
Confidence              3457899999853310          001   1           456777           99999999999999876


Q ss_pred             CCc
Q psy17793        239 LSV  241 (397)
Q Consensus       239 ~~~  241 (397)
                      ...
T Consensus       153 ~~~  155 (257)
T 3f4k_A          153 WFT  155 (257)
T ss_dssp             ESS
T ss_pred             ccC
Confidence            433

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.35  E-value=2.9e-12  Score=119.08  Aligned_cols=128  Identities=18%  Similarity=0.282  Sum_probs=97.9

Q ss_pred             EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEccccc
Q psy17793         69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTR  147 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~  147 (397)
                      ++.....++..++...++.+|||+|||+|..+..+|..+...++|+++|+++.+++.+++++++.|+. +|++..+|+..
T Consensus        56 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~  135 (232)
T 3cbg_A           56 ISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALA  135 (232)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            34445555555555567789999999999999999998765689999999999999999999999986 49999999865


Q ss_pred             ccccchhhHHHhhhcc--cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q psy17793        148 INTSSQIDIERMKLQK--ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPL  225 (397)
Q Consensus       148 ~~~~~~~d~~~~~~~~--~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~l  225 (397)
                      ....       .+...  ++||+|++|++.                   ...       ..+++.           +.++
T Consensus       136 ~l~~-------l~~~~~~~~fD~V~~d~~~-------------------~~~-------~~~l~~-----------~~~~  171 (232)
T 3cbg_A          136 TLEQ-------LTQGKPLPEFDLIFIDADK-------------------RNY-------PRYYEI-----------GLNL  171 (232)
T ss_dssp             HHHH-------HHTSSSCCCEEEEEECSCG-------------------GGH-------HHHHHH-----------HHHT
T ss_pred             HHHH-------HHhcCCCCCcCEEEECCCH-------------------HHH-------HHHHHH-----------HHHH
Confidence            4211       11112  679999998761                   111       345666           8899


Q ss_pred             ccCCcEEEEEecCCC
Q psy17793        226 LKKDGILVYCTCSLS  240 (397)
Q Consensus       226 LkpgG~lvysTCS~~  240 (397)
                      |||||+|++..+.+.
T Consensus       172 LkpgG~lv~~~~~~~  186 (232)
T 3cbg_A          172 LRRGGLMVIDNVLWH  186 (232)
T ss_dssp             EEEEEEEEEECTTGG
T ss_pred             cCCCeEEEEeCCCcC
Confidence            999999999877654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.35  E-value=9.7e-12  Score=114.90  Aligned_cols=140  Identities=13%  Similarity=0.124  Sum_probs=98.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      ++.+|||+|||+|..+..+|... +...|+|+|+|+.+++.+++++++.|++|++++.+|+..+..        ..+..+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~--------~~~~~~  104 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLH--------KMIPDN  104 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHH--------HHSCTT
T ss_pred             CCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH--------HHcCCC
Confidence            57899999999999999999874 467899999999999999999999999999999999877521        114567


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcccc
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN  244 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEn  244 (397)
                      +||.|+++-|.      |.......    ..   .+  .|..+++.           +.++|||||+|+++|-.   +.-
T Consensus       105 ~~d~v~~~~~~------p~~~~~~~----~r---r~--~~~~~l~~-----------~~r~LkpGG~l~i~td~---~~~  155 (218)
T 3dxy_A          105 SLRMVQLFFPD------PWHKARHN----KR---RI--VQVPFAEL-----------VKSKLQLGGVFHMATDW---EPY  155 (218)
T ss_dssp             CEEEEEEESCC------CCCSGGGG----GG---SS--CSHHHHHH-----------HHHHEEEEEEEEEEESC---HHH
T ss_pred             ChheEEEeCCC------Cccchhhh----hh---hh--hhHHHHHH-----------HHHHcCCCcEEEEEeCC---HHH
Confidence            89999997331      11100000    00   00  12456777           88999999999998643   222


Q ss_pred             HHHHHHHHHHCCCcEEEe
Q psy17793        245 EAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       245 E~vV~~~L~~~~~~~l~~  262 (397)
                      -+.+...+...++++.+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~  173 (218)
T 3dxy_A          156 AEHMLEVMSSIDGYKNLS  173 (218)
T ss_dssp             HHHHHHHHHTSTTEEECC
T ss_pred             HHHHHHHHHhCCCccccc
Confidence            223444555666665543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.35  E-value=1.1e-11  Score=115.94  Aligned_cols=140  Identities=15%  Similarity=0.204  Sum_probs=98.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh--------CCCcEEEEEcccccccccchhh
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL--------QLSSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~--------g~~~v~~~~~D~~~~~~~~~~d  155 (397)
                      .++.+|||+|||+|..+..+|... +...|+|+|+|+.+++.++++++.+        ++.|++++.+|+......    
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~----  122 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPN----  122 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGG----
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHH----
Confidence            567899999999999999999874 4569999999999999999999988        888999999999864211    


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                          .+..+.+|.|+++-|..      ......       ....+  .+..++..           +.++|||||.|++.
T Consensus       123 ----~~~~~~~d~v~~~~p~p------~~k~~~-------~~~r~--~~~~~l~~-----------~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          123 ----FFEKGQLSKMFFCFPDP------HFKQRK-------HKARI--ITNTLLSE-----------YAYVLKEGGVVYTI  172 (246)
T ss_dssp             ----TSCTTCEEEEEEESCCC------C-------------CSSC--CCHHHHHH-----------HHHHEEEEEEEEEE
T ss_pred             ----hccccccCEEEEECCCc------ccccch-------hHHhh--ccHHHHHH-----------HHHHcCCCCEEEEE
Confidence                13456899988765421      110000       00000  12567777           89999999999997


Q ss_pred             ecCCCccccHHHHHHHHHHCCCcEEE
Q psy17793        236 TCSLSVEENEAVIAWILHRHPEVELV  261 (397)
Q Consensus       236 TCS~~~eEnE~vV~~~L~~~~~~~l~  261 (397)
                      |-   .++..+.+...+..++.++.+
T Consensus       173 td---~~~~~~~~~~~~~~~~~~~~~  195 (246)
T 2vdv_E          173 TD---VKDLHEWMVKHLEEHPLFERL  195 (246)
T ss_dssp             ES---CHHHHHHHHHHHHHSTTEEEC
T ss_pred             ec---cHHHHHHHHHHHHhCcCeEec
Confidence            53   233344555556677654443

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.34  E-value=1.6e-12  Score=121.98  Aligned_cols=128  Identities=14%  Similarity=0.132  Sum_probs=94.9

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      |.......|......+...+.+.++.+|||+|||+|..+..++...   .+|+++|+|+.+++.++++++..|+.++.+.
T Consensus        14 ~~~s~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~   90 (260)
T 1vl5_A           14 YVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYV   90 (260)
T ss_dssp             ---------CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             eecCccccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCceEEE
Confidence            3444455666666667777888899999999999999999888753   4999999999999999999999999899999


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQ  221 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~  221 (397)
                      .+|+..+.           +..++||+|++.-.          ...+.  +.           ..+|.+           
T Consensus        91 ~~d~~~l~-----------~~~~~fD~V~~~~~----------l~~~~--d~-----------~~~l~~-----------  125 (260)
T 1vl5_A           91 QGDAEQMP-----------FTDERFHIVTCRIA----------AHHFP--NP-----------ASFVSE-----------  125 (260)
T ss_dssp             ECCC-CCC-----------SCTTCEEEEEEESC----------GGGCS--CH-----------HHHHHH-----------
T ss_pred             EecHHhCC-----------CCCCCEEEEEEhhh----------hHhcC--CH-----------HHHHHH-----------
Confidence            99997753           45578999997321          11111  11           456777           


Q ss_pred             ccccccCCcEEEEEec
Q psy17793        222 GIPLLKKDGILVYCTC  237 (397)
Q Consensus       222 a~~lLkpgG~lvysTC  237 (397)
                      +.++|||||+|++++.
T Consensus       126 ~~r~LkpgG~l~~~~~  141 (260)
T 1vl5_A          126 AYRVLKKGGQLLLVDN  141 (260)
T ss_dssp             HHHHEEEEEEEEEEEE
T ss_pred             HHHHcCCCCEEEEEEc
Confidence            8999999999998743

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.34  E-value=6e-12  Score=123.19  Aligned_cols=114  Identities=18%  Similarity=0.261  Sum_probs=88.7

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-----------CCcEEEEE
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-----------LSSIQTHV  142 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-----------~~~v~~~~  142 (397)
                      ...+...+++.+|++|||+|||+|..+..++...+..++|+++|+++.+++.+++|++++|           ..++++..
T Consensus        94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            4455566788999999999999999999999987666899999999999999999999754           35799999


Q ss_pred             cccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccc
Q psy17793        143 YDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQG  222 (397)
Q Consensus       143 ~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a  222 (397)
                      +|+.....         ++..+.||+|++|+|..                            ..++.+           +
T Consensus       174 ~d~~~~~~---------~~~~~~fD~V~~~~~~~----------------------------~~~l~~-----------~  205 (336)
T 2b25_A          174 KDISGATE---------DIKSLTFDAVALDMLNP----------------------------HVTLPV-----------F  205 (336)
T ss_dssp             SCTTCCC----------------EEEEEECSSST----------------------------TTTHHH-----------H
T ss_pred             CChHHccc---------ccCCCCeeEEEECCCCH----------------------------HHHHHH-----------H
Confidence            99977531         13345799999988721                            113455           8


Q ss_pred             cccccCCcEEEEE
Q psy17793        223 IPLLKKDGILVYC  235 (397)
Q Consensus       223 ~~lLkpgG~lvys  235 (397)
                      .++|||||+|+..
T Consensus       206 ~~~LkpgG~lv~~  218 (336)
T 2b25_A          206 YPHLKHGGVCAVY  218 (336)
T ss_dssp             GGGEEEEEEEEEE
T ss_pred             HHhcCCCcEEEEE
Confidence            8999999999865

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.34  E-value=9.6e-12  Score=117.37  Aligned_cols=124  Identities=14%  Similarity=0.109  Sum_probs=97.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ..++.+|||+|||+|..+..++.+  +. +|+|+|+|+.+++.+++|++++++. +++..+|+...            +.
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~--g~-~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~------------~~  181 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKL--GG-KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA------------LP  181 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT--TC-EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH------------GG
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHh--CC-eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc------------Cc
Confidence            467899999999999999988774  23 9999999999999999999999987 88888887653            23


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE  242 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e  242 (397)
                      .++||+|+++.+                   ...+       ..++..           +.++|||||+++++...   .
T Consensus       182 ~~~fD~Vv~n~~-------------------~~~~-------~~~l~~-----------~~~~LkpgG~lils~~~---~  221 (254)
T 2nxc_A          182 FGPFDLLVANLY-------------------AELH-------AALAPR-----------YREALVPGGRALLTGIL---K  221 (254)
T ss_dssp             GCCEEEEEEECC-------------------HHHH-------HHHHHH-----------HHHHEEEEEEEEEEEEE---G
T ss_pred             CCCCCEEEECCc-------------------HHHH-------HHHHHH-----------HHHHcCCCCEEEEEeec---c
Confidence            468999999775                   2222       456777           88999999999998543   3


Q ss_pred             ccHHHHHHHHHHCCCcEEEec
Q psy17793        243 ENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       243 EnE~vV~~~L~~~~~~~l~~~  263 (397)
                      +..+.+...+++. +++++..
T Consensus       222 ~~~~~v~~~l~~~-Gf~~~~~  241 (254)
T 2nxc_A          222 DRAPLVREAMAGA-GFRPLEE  241 (254)
T ss_dssp             GGHHHHHHHHHHT-TCEEEEE
T ss_pred             CCHHHHHHHHHHC-CCEEEEE
Confidence            4556677777776 5777654

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.34  E-value=4.6e-12  Score=127.16  Aligned_cols=156  Identities=16%  Similarity=0.144  Sum_probs=106.6

Q ss_pred             CCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc
Q psy17793         64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY  143 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~  143 (397)
                      .|.++..+.-..+++..+...++.+|||+|||+|+.+..+++.......|+|+|+++.+++.+         .++.+.++
T Consensus        18 ~g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~   88 (421)
T 2ih2_A           18 LGRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILA   88 (421)
T ss_dssp             ---CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEES
T ss_pred             CceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeC
Confidence            456666666666677777766677999999999999999998764567999999999998766         46899999


Q ss_pred             ccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHH----------HHHHHHHHHHHhh
Q psy17793        144 DSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY----------ANIQKKLLQAVYR  213 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l----------~~~Q~~lL~~~~~  213 (397)
                      |+....            ..+.||+|++|||+...+.......+..    ......+          .+.+..++++   
T Consensus        89 D~~~~~------------~~~~fD~Ii~NPPy~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~fl~~---  149 (421)
T 2ih2_A           89 DFLLWE------------PGEAFDLILGNPPYGIVGEASKYPIHVF----KAVKDLYKKAFSTWKGKYNLYGAFLEK---  149 (421)
T ss_dssp             CGGGCC------------CSSCEEEEEECCCCCCBSCTTTCSBCCC----HHHHHHHHHHCTTCCTTCCHHHHHHHH---
T ss_pred             ChhhcC------------ccCCCCEEEECcCccCcccccccccccC----HHHHHHHHHhhhcccCCccHHHHHHHH---
Confidence            987652            2368999999999977653211110011    1111111          1234577888   


Q ss_pred             hhccccccccccccCCcEEEEEecC--CCccccHHHHHHHHHHC
Q psy17793        214 FVSLFDWQGIPLLKKDGILVYCTCS--LSVEENEAVIAWILHRH  255 (397)
Q Consensus       214 f~~~~~~~a~~lLkpgG~lvysTCS--~~~eEnE~vV~~~L~~~  255 (397)
                              +.++|++||++++.+..  +.....+.+.+.+++..
T Consensus       150 --------~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~  185 (421)
T 2ih2_A          150 --------AVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREG  185 (421)
T ss_dssp             --------HHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHS
T ss_pred             --------HHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcC
Confidence                    99999999999998875  22334455555555543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.34  E-value=2.3e-11  Score=113.66  Aligned_cols=127  Identities=18%  Similarity=0.215  Sum_probs=99.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      +.+|++|||+|||+|..++.+|.. +...+|+|+|+++.+++.+++|++++|+.+ |++..+|+....           .
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~-----------~   86 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF-----------E   86 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC-----------C
T ss_pred             CCCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-----------c
Confidence            467899999999999999998885 345789999999999999999999999975 999999998763           1


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV  241 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~  241 (397)
                      ....||.|++    .|.|              ...+       .+||..           +...|+++|+|+.+.-    
T Consensus        87 ~~~~~D~Ivi----aGmG--------------g~lI-------~~IL~~-----------~~~~l~~~~~lIlqp~----  126 (230)
T 3lec_A           87 EADNIDTITI----CGMG--------------GRLI-------ADILNN-----------DIDKLQHVKTLVLQPN----  126 (230)
T ss_dssp             GGGCCCEEEE----EEEC--------------HHHH-------HHHHHH-----------TGGGGTTCCEEEEEES----
T ss_pred             cccccCEEEE----eCCc--------------hHHH-------HHHHHH-----------HHHHhCcCCEEEEECC----
Confidence            2236999875    1211              1222       567888           8899999999999842    


Q ss_pred             cccHHHHHHHHHHCCCcEEEec
Q psy17793        242 EENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       242 eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                       .+++.|..+|.++ +|.++..
T Consensus       127 -~~~~~lr~~L~~~-Gf~i~~E  146 (230)
T 3lec_A          127 -NREDDLRKWLAAN-DFEIVAE  146 (230)
T ss_dssp             -SCHHHHHHHHHHT-TEEEEEE
T ss_pred             -CChHHHHHHHHHC-CCEEEEE
Confidence             3577788888888 6777653

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.33  E-value=3.3e-12  Score=119.08  Aligned_cols=115  Identities=18%  Similarity=0.124  Sum_probs=91.3

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchh
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQI  154 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~  154 (397)
                      .+...+.+.++.+|||+|||+|..+..++...  +.+|+++|+|+.+++.++++++..|+. ++++..+|+..+.     
T Consensus        27 ~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----   99 (256)
T 1nkv_A           27 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-----   99 (256)
T ss_dssp             HHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-----
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC-----
Confidence            34455677899999999999999999999875  468999999999999999999999985 7999999998763     


Q ss_pred             hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793        155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY  234 (397)
Q Consensus       155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy  234 (397)
                            + .++||+|++.-.          .....  +           ..++|++           +.++|||||++++
T Consensus       100 ------~-~~~fD~V~~~~~----------~~~~~--~-----------~~~~l~~-----------~~r~LkpgG~l~~  138 (256)
T 1nkv_A          100 ------A-NEKCDVAACVGA----------TWIAG--G-----------FAGAEEL-----------LAQSLKPGGIMLI  138 (256)
T ss_dssp             ------C-SSCEEEEEEESC----------GGGTS--S-----------SHHHHHH-----------HTTSEEEEEEEEE
T ss_pred             ------c-CCCCCEEEECCC----------hHhcC--C-----------HHHHHHH-----------HHHHcCCCeEEEE
Confidence                  3 578999997221          11111  1           1566777           9999999999999


Q ss_pred             EecC
Q psy17793        235 CTCS  238 (397)
Q Consensus       235 sTCS  238 (397)
                      ++..
T Consensus       139 ~~~~  142 (256)
T 1nkv_A          139 GEPY  142 (256)
T ss_dssp             EEEE
T ss_pred             ecCc
Confidence            8644

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.32  E-value=6.4e-12  Score=114.61  Aligned_cols=119  Identities=13%  Similarity=0.051  Sum_probs=89.2

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEEcccccccc
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-----SIQTHVYDSTRINT  150 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-----~v~~~~~D~~~~~~  150 (397)
                      .+...+...++.+|||+|||+|..+..++... +..+|+++|+|+.+++.++++++..++.     ++++..+|+.... 
T Consensus        20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-   97 (217)
T 3jwh_A           20 GVVAALKQSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD-   97 (217)
T ss_dssp             HHHHHHHHTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC-
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc-
Confidence            34445556678899999999999999998853 3469999999999999999999888876     6999999986542 


Q ss_pred             cchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc
Q psy17793        151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG  230 (397)
Q Consensus       151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG  230 (397)
                                ...++||+|++.-.          .....    ...       ..++|++           +.++|||||
T Consensus        98 ----------~~~~~fD~v~~~~~----------l~~~~----~~~-------~~~~l~~-----------~~~~LkpgG  135 (217)
T 3jwh_A           98 ----------KRFHGYDAATVIEV----------IEHLD----LSR-------LGAFERV-----------LFEFAQPKI  135 (217)
T ss_dssp             ----------GGGCSCSEEEEESC----------GGGCC----HHH-------HHHHHHH-----------HHTTTCCSE
T ss_pred             ----------ccCCCcCEEeeHHH----------HHcCC----HHH-------HHHHHHH-----------HHHHcCCCE
Confidence                      23468999997322          11111    111       1567777           999999999


Q ss_pred             EEEEEecC
Q psy17793        231 ILVYCTCS  238 (397)
Q Consensus       231 ~lvysTCS  238 (397)
                      .++.+.+.
T Consensus       136 ~li~~~~~  143 (217)
T 3jwh_A          136 VIVTTPNI  143 (217)
T ss_dssp             EEEEEEBH
T ss_pred             EEEEccCc
Confidence            87776553

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.31  E-value=1.3e-11  Score=120.09  Aligned_cols=93  Identities=12%  Similarity=0.210  Sum_probs=78.9

Q ss_pred             hhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc
Q psy17793         72 LPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS  151 (397)
Q Consensus        72 ~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~  151 (397)
                      .....+...+.+++|++|||+|||+|..+..++......++|+++|+|+.+++.++++++..|+.++++..+|+....  
T Consensus        62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~--  139 (317)
T 1dl5_A           62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV--  139 (317)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC--
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcc--
Confidence            444555667788999999999999999999999886545789999999999999999999999989999999997642  


Q ss_pred             chhhHHHhhhcccCccEEEEcCCC
Q psy17793        152 SQIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       152 ~~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                               ...++||+|+++++.
T Consensus       140 ---------~~~~~fD~Iv~~~~~  154 (317)
T 1dl5_A          140 ---------PEFSPYDVIFVTVGV  154 (317)
T ss_dssp             ---------GGGCCEEEEEECSBB
T ss_pred             ---------ccCCCeEEEEEcCCH
Confidence                     123679999998874

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.31  E-value=1.5e-12  Score=121.68  Aligned_cols=140  Identities=13%  Similarity=0.123  Sum_probs=100.1

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHH---cCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccc
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALL---MNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT  150 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~---~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~  150 (397)
                      ..++..++...++.+|||+|||+|..|..+|..   +.+.++|+|+|+|+.+++.++    ..+ .+|+++.+|+.....
T Consensus        70 ~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~~~-~~v~~~~gD~~~~~~  144 (236)
T 2bm8_A           70 QAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDM-ENITLHQGDCSDLTT  144 (236)
T ss_dssp             HHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGC-TTEEEEECCSSCSGG
T ss_pred             HHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----ccC-CceEEEECcchhHHH
Confidence            344445555556789999999999999999997   456789999999999988776    122 579999999987410


Q ss_pred             cchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccc-cccCC
Q psy17793        151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIP-LLKKD  229 (397)
Q Consensus       151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~-lLkpg  229 (397)
                      -       +.....+||.|++|..-            ..   .           .++|.+           +.+ +||||
T Consensus       145 l-------~~~~~~~fD~I~~d~~~------------~~---~-----------~~~l~~-----------~~r~~LkpG  180 (236)
T 2bm8_A          145 F-------EHLREMAHPLIFIDNAH------------AN---T-----------FNIMKW-----------AVDHLLEEG  180 (236)
T ss_dssp             G-------GGGSSSCSSEEEEESSC------------SS---H-----------HHHHHH-----------HHHHTCCTT
T ss_pred             H-------HhhccCCCCEEEECCch------------Hh---H-----------HHHHHH-----------HHHhhCCCC
Confidence            0       00122369999998740            01   1           345666           786 99999


Q ss_pred             cEEEEEec-CCCccccHHHHHHHHHHCC-CcEEEe
Q psy17793        230 GILVYCTC-SLSVEENEAVIAWILHRHP-EVELVQ  262 (397)
Q Consensus       230 G~lvysTC-S~~~eEnE~vV~~~L~~~~-~~~l~~  262 (397)
                      |+|++... ...+..+++.+..++++++ +++...
T Consensus       181 G~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~~  215 (236)
T 2bm8_A          181 DYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDM  215 (236)
T ss_dssp             CEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEET
T ss_pred             CEEEEEeCcccccccCHHHHHHHHHhCcccEEEcc
Confidence            99999643 3334556668889999887 676653

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.31  E-value=7.5e-12  Score=108.99  Aligned_cols=109  Identities=18%  Similarity=0.169  Sum_probs=83.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      ++.+|||+|||+|..+..++..   ...|+++|+|+.+++.++++++.+++ ++++.+.|+......       .....+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~-------~~~~~~  109 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPE-------AKAQGE  109 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHH-------HHHTTC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHC---CCeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHh-------hhccCC
Confidence            6889999999999999999885   23499999999999999999999998 899999998764210       001124


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccc--ccccCCcEEEEEecCCC
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI--PLLKKDGILVYCTCSLS  240 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~--~lLkpgG~lvysTCS~~  240 (397)
                      +||+|++|||+.  +.            .           .++++.           ..  ++|||||.+++++.+..
T Consensus       110 ~~D~i~~~~~~~--~~------------~-----------~~~~~~-----------~~~~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A          110 RFTVAFMAPPYA--MD------------L-----------AALFGE-----------LLASGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             CEEEEEECCCTT--SC------------T-----------THHHHH-----------HHHHTCEEEEEEEEEEEETTS
T ss_pred             ceEEEEECCCCc--hh------------H-----------HHHHHH-----------HHhhcccCCCcEEEEEeCCcc
Confidence            799999999954  10            1           122333           34  78999999999877644

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.31  E-value=4.4e-11  Score=112.64  Aligned_cols=126  Identities=12%  Similarity=0.139  Sum_probs=98.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      +.+|++|||+|||+|..++.+|.. +...+|+|+|+|+.+++.+++|++++|+.+ |++..+|+....           .
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~-----------~   86 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI-----------E   86 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC-----------C
T ss_pred             CCCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc-----------C
Confidence            467899999999999999998885 345689999999999999999999999976 999999987753           1


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV  241 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~  241 (397)
                      ...+||.|++    .|.|              ...+       .+||..           +...|+++|+||.+.-    
T Consensus        87 ~~~~~D~Ivi----agmG--------------g~lI-------~~IL~~-----------~~~~L~~~~~lIlq~~----  126 (244)
T 3gnl_A           87 KKDAIDTIVI----AGMG--------------GTLI-------RTILEE-----------GAAKLAGVTKLILQPN----  126 (244)
T ss_dssp             GGGCCCEEEE----EEEC--------------HHHH-------HHHHHH-----------TGGGGTTCCEEEEEES----
T ss_pred             ccccccEEEE----eCCc--------------hHHH-------HHHHHH-----------HHHHhCCCCEEEEEcC----
Confidence            2235999885    1222              1222       567888           8999999999999842    


Q ss_pred             cccHHHHHHHHHHCCCcEEEe
Q psy17793        242 EENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       242 eEnE~vV~~~L~~~~~~~l~~  262 (397)
                       .+++.+..+|.++ +|.++.
T Consensus       127 -~~~~~lr~~L~~~-Gf~i~~  145 (244)
T 3gnl_A          127 -IAAWQLREWSEQN-NWLITS  145 (244)
T ss_dssp             -SCHHHHHHHHHHH-TEEEEE
T ss_pred             -CChHHHHHHHHHC-CCEEEE
Confidence             3566777778777 577654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.31  E-value=1.5e-11  Score=113.94  Aligned_cols=113  Identities=13%  Similarity=0.194  Sum_probs=91.0

Q ss_pred             hHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEccccccccc
Q psy17793         73 PSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTS  151 (397)
Q Consensus        73 ~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~  151 (397)
                      ....+...+++.++++|||+|||+|..+..++..   .++|+++|+++.+++.++++++.+++ .++++...|+....  
T Consensus        79 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--  153 (248)
T 2yvl_A           79 DSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE--  153 (248)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC--
T ss_pred             hHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc--
Confidence            3345556677789999999999999999999987   57999999999999999999999998 67999999987642  


Q ss_pred             chhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcE
Q psy17793        152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI  231 (397)
Q Consensus       152 ~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~  231 (397)
                               ...+.||+|++|+|              .   .           ..++++           +.++|||||+
T Consensus       154 ---------~~~~~~D~v~~~~~--------------~---~-----------~~~l~~-----------~~~~L~~gG~  185 (248)
T 2yvl_A          154 ---------VPEGIFHAAFVDVR--------------E---P-----------WHYLEK-----------VHKSLMEGAP  185 (248)
T ss_dssp             ---------CCTTCBSEEEECSS--------------C---G-----------GGGHHH-----------HHHHBCTTCE
T ss_pred             ---------cCCCcccEEEECCc--------------C---H-----------HHHHHH-----------HHHHcCCCCE
Confidence                     13357999999887              0   1           223455           7788999999


Q ss_pred             EEEEecC
Q psy17793        232 LVYCTCS  238 (397)
Q Consensus       232 lvysTCS  238 (397)
                      +++.+.+
T Consensus       186 l~~~~~~  192 (248)
T 2yvl_A          186 VGFLLPT  192 (248)
T ss_dssp             EEEEESS
T ss_pred             EEEEeCC
Confidence            9987543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.31  E-value=1.3e-11  Score=110.89  Aligned_cols=136  Identities=15%  Similarity=0.146  Sum_probs=89.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch--------
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMND-TGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ--------  153 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~-~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~--------  153 (397)
                      ++++.+|||+|||+|+.+.+++..+++ .++|+|+|+++.+           ...++++..+|+........        
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC--------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhcccccccc
Confidence            467889999999999999999998753 6899999999832           24578899999876520000        


Q ss_pred             -----hhHHH-hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793        154 -----IDIER-MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK  227 (397)
Q Consensus       154 -----~d~~~-~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk  227 (397)
                           ..... ..+..++||+|++|+++.-.|..            .........++..+|..           +.++||
T Consensus        89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~------------~~d~~~~~~~~~~~l~~-----------~~~~Lk  145 (201)
T 2plw_A           89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNK------------IDDHLNSCELTLSITHF-----------MEQYIN  145 (201)
T ss_dssp             ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCH------------HHHHHHHHHHHHHHHHH-----------HHHHEE
T ss_pred             ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCc------------ccCHHHHHHHHHHHHHH-----------HHHHcc
Confidence                 00000 01344689999999864333310            12222223455778888           999999


Q ss_pred             CCcEEEEEecCCCccccHHHHHHHHHHC
Q psy17793        228 KDGILVYCTCSLSVEENEAVIAWILHRH  255 (397)
Q Consensus       228 pgG~lvysTCS~~~eEnE~vV~~~L~~~  255 (397)
                      |||.++..+..   .++...+...++.+
T Consensus       146 pgG~lv~~~~~---~~~~~~l~~~l~~~  170 (201)
T 2plw_A          146 IGGTYIVKMYL---GSQTNNLKTYLKGM  170 (201)
T ss_dssp             EEEEEEEEEEC---STTHHHHHHHHHTT
T ss_pred             CCCEEEEEEeC---CCCHHHHHHHHHHH
Confidence            99999986433   34444455556553

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.30  E-value=3.9e-12  Score=127.39  Aligned_cols=113  Identities=17%  Similarity=0.247  Sum_probs=90.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..+..++..   +.+|+++|+|+.+++.+++|++.++++ ++++..|+....           ...
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~~~~-----------~~~  296 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK-AQALHSDVDEAL-----------TEE  296 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTS-----------CTT
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchhhcc-----------ccC
Confidence            47889999999999999999985   469999999999999999999999975 899999998763           123


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS  240 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~  240 (397)
                      ++||+|++|||+...+..       .    ..       ...+++++           +.++|||||+++++++...
T Consensus       297 ~~fD~Ii~npp~~~~~~~-------~----~~-------~~~~~l~~-----------~~~~LkpGG~l~iv~n~~l  344 (381)
T 3dmg_A          297 ARFDIIVTNPPFHVGGAV-------I----LD-------VAQAFVNV-----------AAARLRPGGVFFLVSNPFL  344 (381)
T ss_dssp             CCEEEEEECCCCCTTCSS-------C----CH-------HHHHHHHH-----------HHHHEEEEEEEEEEECTTS
T ss_pred             CCeEEEEECCchhhcccc-------c----HH-------HHHHHHHH-----------HHHhcCcCcEEEEEEcCCC
Confidence            689999999996532210       0    01       12567777           9999999999999877654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.30  E-value=1e-11  Score=112.12  Aligned_cols=114  Identities=18%  Similarity=0.110  Sum_probs=89.6

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhH
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~  156 (397)
                      ...+...++ +|||+|||+|..+..++..  .+.+|+++|+|+.+++.++++++..++. ++++..+|+..+.       
T Consensus        37 ~~~~~~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------  106 (219)
T 3dlc_A           37 INRFGITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP-------  106 (219)
T ss_dssp             HHHHCCCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS-------
T ss_pred             HHhcCCCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC-------
Confidence            344555666 9999999999999999987  4579999999999999999999999985 6999999998753       


Q ss_pred             HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                          +..++||+|++....          ....  +           ..++|++           +.++|||||++++++
T Consensus       107 ----~~~~~~D~v~~~~~l----------~~~~--~-----------~~~~l~~-----------~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          107 ----IEDNYADLIVSRGSV----------FFWE--D-----------VATAFRE-----------IYRILKSGGKTYIGG  148 (219)
T ss_dssp             ----SCTTCEEEEEEESCG----------GGCS--C-----------HHHHHHH-----------HHHHEEEEEEEEEEE
T ss_pred             ----CCcccccEEEECchH----------hhcc--C-----------HHHHHHH-----------HHHhCCCCCEEEEEe
Confidence                355789999985431          1111  1           1457777           889999999999986


Q ss_pred             cCC
Q psy17793        237 CSL  239 (397)
Q Consensus       237 CS~  239 (397)
                      ...
T Consensus       149 ~~~  151 (219)
T 3dlc_A          149 GFG  151 (219)
T ss_dssp             CCS
T ss_pred             ccC
Confidence            443

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.30  E-value=1.4e-11  Score=116.03  Aligned_cols=116  Identities=17%  Similarity=0.246  Sum_probs=91.8

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchh
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQI  154 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~  154 (397)
                      .+...+.+.++.+|||+|||+|..+..++...  +.+|+++|+|+.+++.++++++..|+. ++.+..+|+..+.     
T Consensus        52 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----  124 (273)
T 3bus_A           52 EMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP-----  124 (273)
T ss_dssp             HHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----
T ss_pred             HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC-----
Confidence            34455677889999999999999999999864  479999999999999999999999986 5999999997753     


Q ss_pred             hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793        155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY  234 (397)
Q Consensus       155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy  234 (397)
                            +..++||+|++.-.          .....  +.           ..+|++           +.++|||||++++
T Consensus       125 ------~~~~~fD~v~~~~~----------l~~~~--~~-----------~~~l~~-----------~~~~L~pgG~l~i  164 (273)
T 3bus_A          125 ------FEDASFDAVWALES----------LHHMP--DR-----------GRALRE-----------MARVLRPGGTVAI  164 (273)
T ss_dssp             ------SCTTCEEEEEEESC----------TTTSS--CH-----------HHHHHH-----------HHTTEEEEEEEEE
T ss_pred             ------CCCCCccEEEEech----------hhhCC--CH-----------HHHHHH-----------HHHHcCCCeEEEE
Confidence                  34578999997322          11111  01           466777           8999999999999


Q ss_pred             EecC
Q psy17793        235 CTCS  238 (397)
Q Consensus       235 sTCS  238 (397)
                      ++..
T Consensus       165 ~~~~  168 (273)
T 3bus_A          165 ADFV  168 (273)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            8754

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.30  E-value=9.8e-12  Score=115.56  Aligned_cols=134  Identities=13%  Similarity=0.115  Sum_probs=97.8

Q ss_pred             EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEccccc
Q psy17793         69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTR  147 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~  147 (397)
                      ++.....++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.+++++++.|+.+ +++..+|+..
T Consensus        44 ~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  123 (239)
T 2hnk_A           44 ISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE  123 (239)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence            444555566666666788999999999999999999987656899999999999999999999999876 9999999865


Q ss_pred             ccccchh----hHHHhhhcc--cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccc
Q psy17793        148 INTSSQI----DIERMKLQK--ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQ  221 (397)
Q Consensus       148 ~~~~~~~----d~~~~~~~~--~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~  221 (397)
                      .......    ......+..  ++||+|++|..                   ....       ..+++.           
T Consensus       124 ~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~-------------------~~~~-------~~~l~~-----------  166 (239)
T 2hnk_A          124 TLQVLIDSKSAPSWASDFAFGPSSIDLFFLDAD-------------------KENY-------PNYYPL-----------  166 (239)
T ss_dssp             HHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSC-------------------GGGH-------HHHHHH-----------
T ss_pred             HHHHHHhhcccccccccccCCCCCcCEEEEeCC-------------------HHHH-------HHHHHH-----------
Confidence            4210000    000001222  68999999754                   1111       245666           


Q ss_pred             ccccccCCcEEEEEecCC
Q psy17793        222 GIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       222 a~~lLkpgG~lvysTCS~  239 (397)
                      +.++|||||++++.++.+
T Consensus       167 ~~~~L~pgG~lv~~~~~~  184 (239)
T 2hnk_A          167 ILKLLKPGGLLIADNVLW  184 (239)
T ss_dssp             HHHHEEEEEEEEEECSSG
T ss_pred             HHHHcCCCeEEEEEcccc
Confidence            888999999999987654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.29  E-value=9.5e-12  Score=113.49  Aligned_cols=119  Identities=12%  Similarity=0.107  Sum_probs=88.2

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEEcccccccc
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-----SIQTHVYDSTRINT  150 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-----~v~~~~~D~~~~~~  150 (397)
                      .+...+...++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++++...++.     ++++..+|+.... 
T Consensus        20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-   97 (219)
T 3jwg_A           20 TVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRD-   97 (219)
T ss_dssp             HHHHHHHHTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCC-
T ss_pred             HHHHHHhhcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccc-
Confidence            34445555678899999999999999888753 3479999999999999999999888775     7999999985542 


Q ss_pred             cchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc
Q psy17793        151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG  230 (397)
Q Consensus       151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG  230 (397)
                                ...++||+|++.-.          .....    ...       ..++|++           +.++|||||
T Consensus        98 ----------~~~~~fD~V~~~~~----------l~~~~----~~~-------~~~~l~~-----------~~~~LkpgG  135 (219)
T 3jwg_A           98 ----------KRFSGYDAATVIEV----------IEHLD----ENR-------LQAFEKV-----------LFEFTRPQT  135 (219)
T ss_dssp             ----------GGGTTCSEEEEESC----------GGGCC----HHH-------HHHHHHH-----------HHTTTCCSE
T ss_pred             ----------cccCCCCEEEEHHH----------HHhCC----HHH-------HHHHHHH-----------HHHhhCCCE
Confidence                      34568999997321          11111    111       1567777           899999999


Q ss_pred             EEEEEecC
Q psy17793        231 ILVYCTCS  238 (397)
Q Consensus       231 ~lvysTCS  238 (397)
                      .++...+.
T Consensus       136 ~~i~~~~~  143 (219)
T 3jwg_A          136 VIVSTPNK  143 (219)
T ss_dssp             EEEEEEBG
T ss_pred             EEEEccch
Confidence            77765443

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.29  E-value=3.5e-12  Score=130.06  Aligned_cols=161  Identities=16%  Similarity=0.060  Sum_probs=115.1

Q ss_pred             CCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcC------------CCcEEEEEeCCHHHHHHHHHHHH
Q psy17793         64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN------------DTGTLIALDKSKPRVTKLEETIK  131 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~------------~~~~V~avD~s~~rl~~l~~n~~  131 (397)
                      .|.++....-+.+++.++.+.++.+|||.|||+|++++.++..+.            ....++|+|+++.+++.++.|+.
T Consensus       150 ~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~  229 (445)
T 2okc_A          150 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY  229 (445)
T ss_dssp             CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred             CCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence            466676666677788888999999999999999999999887652            12579999999999999999999


Q ss_pred             HhCCC--cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcc--cccccCccchHHHHHHHHHHHHHH
Q psy17793        132 KLQLS--SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPM--FYNANSFLNLDKKIKSYANIQKKL  207 (397)
Q Consensus       132 ~~g~~--~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~--~~~~~s~~~~~~~~~~l~~~Q~~l  207 (397)
                      ..|+.  ++.+.++|+....            ...+||+|++|||+++......  .......   .     ....+..+
T Consensus       230 l~g~~~~~~~i~~gD~l~~~------------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~---~-----~~~~~~~f  289 (445)
T 2okc_A          230 LHGIGTDRSPIVCEDSLEKE------------PSTLVDVILANPPFGTRPAGSVDINRPDFYV---E-----TKNNQLNF  289 (445)
T ss_dssp             HTTCCSSCCSEEECCTTTSC------------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSS---C-----CSCHHHHH
T ss_pred             HhCCCcCCCCEeeCCCCCCc------------ccCCcCEEEECCCCCCcccccchhhHhhcCC---C-----CcchHHHH
Confidence            99986  6788899987652            1247999999999988653111  0000000   0     01123567


Q ss_pred             HHHHhhhhccccccccccccCCcEEEEEecC--CCccccHH-HHHHHHHHC
Q psy17793        208 LQAVYRFVSLFDWQGIPLLKKDGILVYCTCS--LSVEENEA-VIAWILHRH  255 (397)
Q Consensus       208 L~~~~~f~~~~~~~a~~lLkpgG~lvysTCS--~~~eEnE~-vV~~~L~~~  255 (397)
                      +++           +.++|||||++++.++.  +.....+. +.+++++++
T Consensus       290 l~~-----------~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L~~~~  329 (445)
T 2okc_A          290 LQH-----------MMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQDF  329 (445)
T ss_dssp             HHH-----------HHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHE
T ss_pred             HHH-----------HHHHhccCCEEEEEECCcccccCcHHHHHHHHHHhcC
Confidence            788           89999999999988764  22222333 444566654

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.29  E-value=2.4e-12  Score=120.58  Aligned_cols=123  Identities=17%  Similarity=0.167  Sum_probs=87.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHh---CCCc----------------------
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKL---QLSS----------------------  137 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~---g~~~----------------------  137 (397)
                      .++.+|||+|||+|..+..++..+ ....+|+|+|+|+.+++.+++++..+   ++.+                      
T Consensus        50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (250)
T 1o9g_A           50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  129 (250)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence            467799999999999999999863 23568999999999999999999877   5532                      


Q ss_pred             ----EE-------------EEEcccccccccchhhHHHhhh-cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHH
Q psy17793        138 ----IQ-------------THVYDSTRINTSSQIDIERMKL-QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS  199 (397)
Q Consensus       138 ----v~-------------~~~~D~~~~~~~~~~d~~~~~~-~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~  199 (397)
                          ++             +.++|+......       ... ...+||+|++|||+.....       +.    .   ..
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~-------~~~~~~~~fD~Iv~npp~~~~~~-------~~----~---~~  188 (250)
T 1o9g_A          130 AARRLRERLTAEGGALPCAIRTADVFDPRAL-------SAVLAGSAPDVVLTDLPYGERTH-------WE----G---QV  188 (250)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGH-------HHHHTTCCCSEEEEECCGGGSSS-------SS----S---CC
T ss_pred             hhhhhhhhccccccccccceeeccccccccc-------ccccCCCCceEEEeCCCeecccc-------cc----c---cc
Confidence                56             888988764200       000 2247999999999643221       10    0   00


Q ss_pred             HHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       200 l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      -......++++           +.++|||||+++++.++
T Consensus       189 ~~~~~~~~l~~-----------~~~~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          189 PGQPVAGLLRS-----------LASALPAHAVIAVTDRS  216 (250)
T ss_dssp             CHHHHHHHHHH-----------HHHHSCTTCEEEEEESS
T ss_pred             cccHHHHHHHH-----------HHHhcCCCcEEEEeCcc
Confidence            11223677888           89999999999996554

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.29  E-value=1.4e-11  Score=113.96  Aligned_cols=110  Identities=21%  Similarity=0.324  Sum_probs=86.6

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhh
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      +.++++++|||+|||+|..+.+++...++.++|+|+|+|+.+++.+.+++++.  .++++..+|+.....        .+
T Consensus        73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~--------~~  142 (233)
T 2ipx_A           73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHK--------YR  142 (233)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGG--------GG
T ss_pred             ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhh--------hc
Confidence            45678999999999999999999998755689999999999999998888876  679999999976420        11


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      +..++||+|++|+|  .                ...       ...++.+           +.++|||||+++.+.
T Consensus       143 ~~~~~~D~V~~~~~--~----------------~~~-------~~~~~~~-----------~~~~LkpgG~l~i~~  182 (233)
T 2ipx_A          143 MLIAMVDVIFADVA--Q----------------PDQ-------TRIVALN-----------AHTFLRNGGHFVISI  182 (233)
T ss_dssp             GGCCCEEEEEECCC--C----------------TTH-------HHHHHHH-----------HHHHEEEEEEEEEEE
T ss_pred             ccCCcEEEEEEcCC--C----------------ccH-------HHHHHHH-----------HHHHcCCCeEEEEEE
Confidence            23568999999987  0                011       1345666           888999999999853

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.28  E-value=3.6e-11  Score=122.22  Aligned_cols=89  Identities=25%  Similarity=0.347  Sum_probs=75.3

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      ..+.+.++++|||+|||+|..+..+|..   ..+|+|+|+|+.+++.+++|++.+|++|++++.+|+......       
T Consensus       280 ~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~-------  349 (433)
T 1uwv_A          280 EWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK-------  349 (433)
T ss_dssp             HHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS-------
T ss_pred             HhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh-------
Confidence            4456678899999999999999999885   579999999999999999999999999999999999874311       


Q ss_pred             hhhcccCccEEEEcCCCCC
Q psy17793        159 MKLQKESFDRILLDAPCSG  177 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg  177 (397)
                      .++..++||+|++|||++|
T Consensus       350 ~~~~~~~fD~Vv~dPPr~g  368 (433)
T 1uwv_A          350 QPWAKNGFDKVLLDPARAG  368 (433)
T ss_dssp             SGGGTTCCSEEEECCCTTC
T ss_pred             hhhhcCCCCEEEECCCCcc
Confidence            1133467999999999766

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.28  E-value=1.6e-11  Score=111.62  Aligned_cols=119  Identities=16%  Similarity=0.162  Sum_probs=89.9

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRIN  149 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~  149 (397)
                      +..-..++...+...++.+|||+|||+|..+..++..   ..+|+|+|+|+.+++.+++++...+  ++++..+|+....
T Consensus        36 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~  110 (216)
T 3ofk_A           36 RERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWS--HISWAATDILQFS  110 (216)
T ss_dssp             HHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCS--SEEEEECCTTTCC
T ss_pred             HHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCC--CeEEEEcchhhCC
Confidence            3334445555677778889999999999999988875   3689999999999999999887654  7999999998763


Q ss_pred             ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793        150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD  229 (397)
Q Consensus       150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg  229 (397)
                                  ..++||+|++...          .....  + ...       ..++|++           +.++||||
T Consensus       111 ------------~~~~fD~v~~~~~----------l~~~~--~-~~~-------~~~~l~~-----------~~~~L~pg  147 (216)
T 3ofk_A          111 ------------TAELFDLIVVAEV----------LYYLE--D-MTQ-------MRTAIDN-----------MVKMLAPG  147 (216)
T ss_dssp             ------------CSCCEEEEEEESC----------GGGSS--S-HHH-------HHHHHHH-----------HHHTEEEE
T ss_pred             ------------CCCCccEEEEccH----------HHhCC--C-HHH-------HHHHHHH-----------HHHHcCCC
Confidence                        3478999998432          11111  0 111       1466777           89999999


Q ss_pred             cEEEEEe
Q psy17793        230 GILVYCT  236 (397)
Q Consensus       230 G~lvysT  236 (397)
                      |.+++++
T Consensus       148 G~l~~~~  154 (216)
T 3ofk_A          148 GHLVFGS  154 (216)
T ss_dssp             EEEEEEE
T ss_pred             CEEEEEe
Confidence            9999986

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.28  E-value=1.5e-11  Score=111.93  Aligned_cols=99  Identities=23%  Similarity=0.283  Sum_probs=79.4

Q ss_pred             CcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcc
Q psy17793         65 SMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD  144 (397)
Q Consensus        65 g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D  144 (397)
                      +..+.+......+...+.+.++.+|||+|||+|..+..++...+..++|+++|+++.+++.++++++..|+.++++...|
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d  136 (215)
T 2yxe_A           57 GQTISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGD  136 (215)
T ss_dssp             TEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESC
T ss_pred             CcEeCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence            44444444444555667788999999999999999999999875557999999999999999999999999899999999


Q ss_pred             cccccccchhhHHHhhhcccCccEEEEcCC
Q psy17793        145 STRINTSSQIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       145 ~~~~~~~~~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                      +....           ...+.||+|+++.+
T Consensus       137 ~~~~~-----------~~~~~fD~v~~~~~  155 (215)
T 2yxe_A          137 GTLGY-----------EPLAPYDRIYTTAA  155 (215)
T ss_dssp             GGGCC-----------GGGCCEEEEEESSB
T ss_pred             cccCC-----------CCCCCeeEEEECCc
Confidence            85432           12467999999765

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.28  E-value=1.1e-11  Score=115.70  Aligned_cols=115  Identities=20%  Similarity=0.167  Sum_probs=88.9

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      +...+.+.++.+|||+|||+|..+..++...  +.+|+|+|+|+.+++.+++++...  .++++...|+....       
T Consensus        47 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~-------  115 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKE-------  115 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCC-------
T ss_pred             HHHhcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCC-------
Confidence            3445567889999999999999999999975  469999999999999999887655  67999999998752       


Q ss_pred             HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                          +..++||+|++.-.          .....    ...       ...+|++           +.++|||||++++++
T Consensus       116 ----~~~~~fD~v~~~~~----------l~~~~----~~~-------~~~~l~~-----------~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          116 ----FPENNFDLIYSRDA----------ILALS----LEN-------KNKLFQK-----------CYKWLKPTGTLLITD  159 (266)
T ss_dssp             ----CCTTCEEEEEEESC----------GGGSC----HHH-------HHHHHHH-----------HHHHEEEEEEEEEEE
T ss_pred             ----CCCCcEEEEeHHHH----------HHhcC----hHH-------HHHHHHH-----------HHHHcCCCCEEEEEE
Confidence                34578999998322          11111    111       1567777           899999999999987


Q ss_pred             cC
Q psy17793        237 CS  238 (397)
Q Consensus       237 CS  238 (397)
                      ..
T Consensus       160 ~~  161 (266)
T 3ujc_A          160 YC  161 (266)
T ss_dssp             EE
T ss_pred             ec
Confidence            53

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.28  E-value=2.9e-12  Score=124.14  Aligned_cols=94  Identities=12%  Similarity=0.080  Sum_probs=75.9

Q ss_pred             EEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccc
Q psy17793         67 GILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST  146 (397)
Q Consensus        67 ~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~  146 (397)
                      |..++.....+...+++.++++|||+|||+|..|..++..   .++|+|+|+|+.+++.++++++..+..+++++.+|+.
T Consensus        24 fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~  100 (299)
T 2h1r_A           24 LLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAI  100 (299)
T ss_dssp             EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CC
T ss_pred             eecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchh
Confidence            4445555666677788889999999999999999988874   4699999999999999999999888888999999998


Q ss_pred             cccccchhhHHHhhhcccCccEEEEcCCCC
Q psy17793        147 RINTSSQIDIERMKLQKESFDRILLDAPCS  176 (397)
Q Consensus       147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCS  176 (397)
                      ...             ...||.|++|+|+.
T Consensus       101 ~~~-------------~~~~D~Vv~n~py~  117 (299)
T 2h1r_A          101 KTV-------------FPKFDVCTANIPYK  117 (299)
T ss_dssp             SSC-------------CCCCSEEEEECCGG
T ss_pred             hCC-------------cccCCEEEEcCCcc
Confidence            752             24799999999954

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.27  E-value=1.2e-11  Score=113.49  Aligned_cols=93  Identities=24%  Similarity=0.314  Sum_probs=74.2

Q ss_pred             HHHhcc--CCCCCCeEEEEcCCCChHHHHHHHHcC----CCcEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEEcc
Q psy17793         76 LAGHYL--DVQPGQKVLDMCAAPGNKLTHIALLMN----DTGTLIALDKSKPRVTKLEETIKKLQ-----LSSIQTHVYD  144 (397)
Q Consensus        76 l~~~~L--~~~~g~~VLDlcagpG~kt~~lA~~~~----~~~~V~avD~s~~rl~~l~~n~~~~g-----~~~v~~~~~D  144 (397)
                      .+...+  .++++.+|||+|||+|..+..++...+    +.++|+++|+++.+++.+++++++.+     ..++++..+|
T Consensus        69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  148 (227)
T 2pbf_A           69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKN  148 (227)
T ss_dssp             HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECC
T ss_pred             HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECC
Confidence            334445  478899999999999999999999865    45799999999999999999999998     6789999999


Q ss_pred             cccccccchhhHHHhhhcccCccEEEEcCCC
Q psy17793        145 STRINTSSQIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       145 ~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                      +......       .....+.||+|++++++
T Consensus       149 ~~~~~~~-------~~~~~~~fD~I~~~~~~  172 (227)
T 2pbf_A          149 IYQVNEE-------EKKELGLFDAIHVGASA  172 (227)
T ss_dssp             GGGCCHH-------HHHHHCCEEEEEECSBB
T ss_pred             hHhcccc-------cCccCCCcCEEEECCch
Confidence            8764200       00123679999998874

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.27  E-value=9.2e-11  Score=109.72  Aligned_cols=85  Identities=9%  Similarity=0.108  Sum_probs=69.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEccccc-ccccchhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTR-INTSSQIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~-~~~~~~~d~~~~~~~  162 (397)
                      ++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.+++|++.+++.+ ++++++|+.. +...         +.
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---------~~  134 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDA---------LK  134 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTT---------ST
T ss_pred             CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhh---------hh
Confidence            57799999999999999998865 34799999999999999999999999875 9999999765 2111         22


Q ss_pred             ---ccCccEEEEcCCCCCCC
Q psy17793        163 ---KESFDRILLDAPCSGFG  179 (397)
Q Consensus       163 ---~~~fD~Il~DpPCSg~G  179 (397)
                         .++||+|++|||+...+
T Consensus       135 ~~~~~~fD~i~~npp~~~~~  154 (254)
T 2h00_A          135 EESEIIYDFCMCNPPFFANQ  154 (254)
T ss_dssp             TCCSCCBSEEEECCCCC---
T ss_pred             cccCCcccEEEECCCCccCc
Confidence               25799999999997655

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.27  E-value=1.9e-11  Score=106.01  Aligned_cols=132  Identities=16%  Similarity=0.112  Sum_probs=90.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      +.++.+|||+|||+|..+..++..++...+|+++|+++ +++          ..++++...|+......   +.....+.
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~----------~~~~~~~~~d~~~~~~~---~~~~~~~~   85 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP----------IVGVDFLQGDFRDELVM---KALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC----------CTTEEEEESCTTSHHHH---HHHHHHHT
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc----------cCcEEEEEcccccchhh---hhhhccCC
Confidence            57889999999999999999999865568999999999 543          25789999998764200   00000134


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE  242 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e  242 (397)
                      .++||+|++|+|+...+..            ..........+..+++.           +.++|||||.++.++..   .
T Consensus        86 ~~~~D~i~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~-----------~~~~L~~gG~l~~~~~~---~  139 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTP------------AVDIPRAMYLVELALEM-----------CRDVLAPGGSFVVKVFQ---G  139 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCH------------HHHHHHHHHHHHHHHHH-----------HHHHEEEEEEEEEEEES---S
T ss_pred             CCceeEEEECCCccccCCC------------ccchHHHHHHHHHHHHH-----------HHHHcCCCcEEEEEEec---C
Confidence            4689999999997665421            11122223344778888           99999999999987543   3


Q ss_pred             ccHHHHHHHHHH
Q psy17793        243 ENEAVIAWILHR  254 (397)
Q Consensus       243 EnE~vV~~~L~~  254 (397)
                      ++...+...++.
T Consensus       140 ~~~~~~~~~~~~  151 (180)
T 1ej0_A          140 EGFDEYLREIRS  151 (180)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            344444445544

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.27  E-value=2.6e-11  Score=113.35  Aligned_cols=141  Identities=17%  Similarity=0.165  Sum_probs=95.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH------hCCCcEEEEEcccccccccchhhHH
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKK------LQLSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~------~g~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      .++.+|||+|||+|..+..+|... +...|+|+|+|+.+++.++++++.      .+..||+++.+|+.....       
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~-------  116 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLP-------  116 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHH-------
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhh-------
Confidence            456799999999999999999864 457999999999999999998875      467889999999976321       


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                       ..+..++||.|++.-|.      |.....       .....  -.+..+|+.           +.++|||||.|+++|+
T Consensus       117 -~~~~~~~~D~v~~~~~d------p~~k~~-------h~krr--~~~~~~l~~-----------~~~~LkpGG~l~~~td  169 (235)
T 3ckk_A          117 -NFFYKGQLTKMFFLFPD------PHFKRT-------KHKWR--IISPTLLAE-----------YAYVLRVGGLVYTITD  169 (235)
T ss_dssp             -HHCCTTCEEEEEEESCC--------------------------CCCHHHHHH-----------HHHHEEEEEEEEEEES
T ss_pred             -hhCCCcCeeEEEEeCCC------chhhhh-------hhhhh--hhhHHHHHH-----------HHHHCCCCCEEEEEeC
Confidence             11345789999986541      111100       00000  012467787           8999999999999875


Q ss_pred             CCCccccHHHHHHHHHHCCCcEEEe
Q psy17793        238 SLSVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       238 S~~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                      .   ++.-+.+...+..++.++.+.
T Consensus       170 ~---~~~~~~~~~~l~~~~~f~~~~  191 (235)
T 3ckk_A          170 V---LELHDWMCTHFEEHPLFERVP  191 (235)
T ss_dssp             C---HHHHHHHHHHHHTSTTEEEEC
T ss_pred             C---HHHHHHHHHHHHHCCCccccC
Confidence            3   222223344456676666654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.27  E-value=3.9e-11  Score=106.99  Aligned_cols=114  Identities=18%  Similarity=0.130  Sum_probs=89.2

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d  155 (397)
                      .+...+...++.+|||+|||+|..+..++..   +.+|+++|+|+.+++.++++++..+++++++...|+....      
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~------   93 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLT------   93 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCC------
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCC------
Confidence            4445666677889999999999999999885   4699999999999999999999999888999999987752      


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                           + .++||+|++...          .....    ...       ..++|++           +.++|||||.+++.
T Consensus        94 -----~-~~~~D~v~~~~~----------l~~~~----~~~-------~~~~l~~-----------~~~~L~~gG~l~~~  135 (199)
T 2xvm_A           94 -----F-DRQYDFILSTVV----------LMFLE----AKT-------IPGLIAN-----------MQRCTKPGGYNLIV  135 (199)
T ss_dssp             -----C-CCCEEEEEEESC----------GGGSC----GGG-------HHHHHHH-----------HHHTEEEEEEEEEE
T ss_pred             -----C-CCCceEEEEcch----------hhhCC----HHH-------HHHHHHH-----------HHHhcCCCeEEEEE
Confidence                 3 568999998543          11111    011       1556777           88999999998775


Q ss_pred             e
Q psy17793        236 T  236 (397)
Q Consensus       236 T  236 (397)
                      +
T Consensus       136 ~  136 (199)
T 2xvm_A          136 A  136 (199)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.26  E-value=3.6e-12  Score=118.89  Aligned_cols=113  Identities=15%  Similarity=0.131  Sum_probs=85.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ..+|.+|||+|||+|..+.++++.  ...+|+++|+|+.+++.++++.+..+. +++++.+|+....         ..+.
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~--~~~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~---------~~~~  125 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVA---------PTLP  125 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTS--CEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHG---------GGSC
T ss_pred             ccCCCeEEEECCCccHHHHHHHHh--CCcEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhc---------cccc
Confidence            367899999999999999988874  346899999999999999999888764 5788888886653         2256


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      .++||.|+.|+.-+...                 ...+.. ...++++           +.++|||||+|+|.+
T Consensus       126 ~~~FD~i~~D~~~~~~~-----------------~~~~~~-~~~~~~e-----------~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          126 DGHFDGILYDTYPLSEE-----------------TWHTHQ-FNFIKNH-----------AFRLLKPGGVLTYCN  170 (236)
T ss_dssp             TTCEEEEEECCCCCBGG-----------------GTTTHH-HHHHHHT-----------HHHHEEEEEEEEECC
T ss_pred             ccCCceEEEeeeecccc-----------------hhhhcc-hhhhhhh-----------hhheeCCCCEEEEEe
Confidence            67899999998632210                 111111 1566777           999999999999864

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.26  E-value=1.3e-11  Score=113.46  Aligned_cols=109  Identities=19%  Similarity=0.271  Sum_probs=85.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      +.++++|||+|||+|..+..++..+++.++|+|+|+|+.+++.+++++++.  .+++++.+|+......        ...
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~--------~~~  140 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEY--------RAL  140 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGG--------TTT
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchh--------hcc
Confidence            678999999999999999999998765689999999999999999998766  6899999998764200        012


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                      .++||+|++|+|-                  ...       ...++.+           +.++|||||+++++.+
T Consensus       141 ~~~~D~v~~~~~~------------------~~~-------~~~~l~~-----------~~~~LkpgG~l~~~~~  179 (227)
T 1g8a_A          141 VPKVDVIFEDVAQ------------------PTQ-------AKILIDN-----------AEVYLKRGGYGMIAVK  179 (227)
T ss_dssp             CCCEEEEEECCCS------------------TTH-------HHHHHHH-----------HHHHEEEEEEEEEEEE
T ss_pred             cCCceEEEECCCC------------------HhH-------HHHHHHH-----------HHHhcCCCCEEEEEEe
Confidence            3579999999870                  010       1334666           8899999999998743

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.26  E-value=2.2e-11  Score=116.99  Aligned_cols=123  Identities=16%  Similarity=0.213  Sum_probs=92.2

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhh
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d  155 (397)
                      +...+.++++.+|||+|||+|..+..++...+  .+|+|+|+|+.+++.++++++..|+. ++++..+|+..+       
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------  134 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-------  134 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-------
T ss_pred             HHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-------
Confidence            45566788999999999999999999998753  78999999999999999999999987 699999998653       


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                             .++||+|++.-.-... ..|+.  ...    .+.       ...+|++           +.++|||||++++.
T Consensus       135 -------~~~fD~v~~~~~~~~~-~d~~~--~~~----~~~-------~~~~l~~-----------~~~~LkpgG~l~i~  182 (302)
T 3hem_A          135 -------DEPVDRIVSLGAFEHF-ADGAG--DAG----FER-------YDTFFKK-----------FYNLTPDDGRMLLH  182 (302)
T ss_dssp             -------CCCCSEEEEESCGGGT-TCCSS--CCC----TTH-------HHHHHHH-----------HHHSSCTTCEEEEE
T ss_pred             -------CCCccEEEEcchHHhc-Ccccc--ccc----hhH-------HHHHHHH-----------HHHhcCCCcEEEEE
Confidence                   3689999974320000 00000  000    011       1566777           89999999999998


Q ss_pred             ecCCC
Q psy17793        236 TCSLS  240 (397)
Q Consensus       236 TCS~~  240 (397)
                      +.+..
T Consensus       183 ~~~~~  187 (302)
T 3hem_A          183 TITIP  187 (302)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            77644

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.26  E-value=2.9e-11  Score=108.05  Aligned_cols=132  Identities=22%  Similarity=0.181  Sum_probs=86.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCC--------cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE-Ecccccccccch
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDT--------GTLIALDKSKPRVTKLEETIKKLQLSSIQTH-VYDSTRINTSSQ  153 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~--------~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~-~~D~~~~~~~~~  153 (397)
                      ++++++|||+|||+|..+..++..++..        ++|+|+|+|+.+           .+.++++. .+|+......  
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~--   86 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTS--   86 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHH--
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHH--
Confidence            5678999999999999999999987543        799999999842           34568888 8887653100  


Q ss_pred             hhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793        154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV  233 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv  233 (397)
                       +.....+..++||+|++|.++..+|.       +.     .........+..+++.           +.++|||||+++
T Consensus        87 -~~~~~~~~~~~fD~V~~~~~~~~~~~-------~~-----~~~~~~~~~~~~~l~~-----------~~~~LkpgG~lv  142 (196)
T 2nyu_A           87 -QRILEVLPGRRADVILSDMAPNATGF-------RD-----LDHDRLISLCLTLLSV-----------TPDILQPGGTFL  142 (196)
T ss_dssp             -HHHHHHSGGGCEEEEEECCCCCCCSC-------HH-----HHHHHHHHHHHHHHHH-----------HHHHEEEEEEEE
T ss_pred             -HHHHHhcCCCCCcEEEeCCCCCCCCC-------cc-----cCHHHHHHHHHHHHHH-----------HHHHhcCCCEEE
Confidence             00001123458999999986544332       10     1111223344678888           999999999999


Q ss_pred             EEecCCCccccHHHHHHHHHH
Q psy17793        234 YCTCSLSVEENEAVIAWILHR  254 (397)
Q Consensus       234 ysTCS~~~eEnE~vV~~~L~~  254 (397)
                      ..++.  .++.+++.. .++.
T Consensus       143 ~~~~~--~~~~~~~~~-~l~~  160 (196)
T 2nyu_A          143 CKTWA--GSQSRRLQR-RLTE  160 (196)
T ss_dssp             EEECC--SGGGHHHHH-HHHH
T ss_pred             EEecC--CccHHHHHH-HHHH
Confidence            98653  333344443 4443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.26  E-value=1.5e-11  Score=114.01  Aligned_cols=100  Identities=11%  Similarity=0.210  Sum_probs=80.9

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      +..|....+......+...+.+.++++|||+|||+|..+..++...+  .+|+++|+++.+++.++++++.+|+.++++.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~  145 (235)
T 1jg1_A           68 IPAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVI  145 (235)
T ss_dssp             CSTTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             cCCCceeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Confidence            34566666665566666777888999999999999999999999864  7899999999999999999999999889999


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCC
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                      .+|+....           .....||+|+++.+
T Consensus       146 ~~d~~~~~-----------~~~~~fD~Ii~~~~  167 (235)
T 1jg1_A          146 LGDGSKGF-----------PPKAPYDVIIVTAG  167 (235)
T ss_dssp             ESCGGGCC-----------GGGCCEEEEEECSB
T ss_pred             ECCcccCC-----------CCCCCccEEEECCc
Confidence            99973221           01235999999765

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.26  E-value=8.6e-12  Score=114.95  Aligned_cols=98  Identities=13%  Similarity=0.209  Sum_probs=76.3

Q ss_pred             EEEechhHHHHHhcc--CCCCCCeEEEEcCCCChHHHHHHHHcCC-----CcEEEEEeCCHHHHHHHHHHHHHhC-----
Q psy17793         67 GILQNLPSILAGHYL--DVQPGQKVLDMCAAPGNKLTHIALLMND-----TGTLIALDKSKPRVTKLEETIKKLQ-----  134 (397)
Q Consensus        67 ~~~Qd~~S~l~~~~L--~~~~g~~VLDlcagpG~kt~~lA~~~~~-----~~~V~avD~s~~rl~~l~~n~~~~g-----  134 (397)
                      .+.|..........+  .++++++|||+|||+|..+..++...+.     .++|+++|+++.+++.+++++++.+     
T Consensus        64 ~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~  143 (227)
T 1r18_A           64 TISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLD  143 (227)
T ss_dssp             EECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccC
Confidence            333444334444555  4788999999999999999999987642     3699999999999999999999887     


Q ss_pred             CCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCC
Q psy17793        135 LSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       135 ~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                      ..++++...|+....           ...+.||+|++++++
T Consensus       144 ~~~v~~~~~d~~~~~-----------~~~~~fD~I~~~~~~  173 (227)
T 1r18_A          144 SGQLLIVEGDGRKGY-----------PPNAPYNAIHVGAAA  173 (227)
T ss_dssp             HTSEEEEESCGGGCC-----------GGGCSEEEEEECSCB
T ss_pred             CCceEEEECCcccCC-----------CcCCCccEEEECCch
Confidence            678999999987631           112679999998873

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.25  E-value=1.2e-11  Score=121.77  Aligned_cols=127  Identities=20%  Similarity=0.198  Sum_probs=98.2

Q ss_pred             chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccc
Q psy17793         71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINT  150 (397)
Q Consensus        71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~  150 (397)
                      |..+.++...+.+.++.+|||+|||+|..+..++... +..+|+++|+|+.+++.++++++.+++. +++...|+...  
T Consensus       182 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~--  257 (343)
T 2pjd_A          182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSE--  257 (343)
T ss_dssp             CHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTT--
T ss_pred             cHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEcccccc--
Confidence            3456666677766678899999999999999999873 4568999999999999999999999875 57788887653  


Q ss_pred             cchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc
Q psy17793        151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG  230 (397)
Q Consensus       151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG  230 (397)
                                 ..++||.|+++||..- |             .....    ....+++++           +.++|||||
T Consensus       258 -----------~~~~fD~Iv~~~~~~~-g-------------~~~~~----~~~~~~l~~-----------~~~~LkpgG  297 (343)
T 2pjd_A          258 -----------VKGRFDMIISNPPFHD-G-------------MQTSL----DAAQTLIRG-----------AVRHLNSGG  297 (343)
T ss_dssp             -----------CCSCEEEEEECCCCCS-S-------------SHHHH----HHHHHHHHH-----------HGGGEEEEE
T ss_pred             -----------ccCCeeEEEECCCccc-C-------------ccCCH----HHHHHHHHH-----------HHHhCCCCc
Confidence                       2468999999998421 0             01111    122677888           999999999


Q ss_pred             EEEEEecCCCc
Q psy17793        231 ILVYCTCSLSV  241 (397)
Q Consensus       231 ~lvysTCS~~~  241 (397)
                      .+++.+.+..+
T Consensus       298 ~l~i~~~~~~~  308 (343)
T 2pjd_A          298 ELRIVANAFLP  308 (343)
T ss_dssp             EEEEEEETTSS
T ss_pred             EEEEEEcCCCC
Confidence            99998877554

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.25  E-value=3.4e-11  Score=114.41  Aligned_cols=115  Identities=18%  Similarity=0.224  Sum_probs=88.6

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhh
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d  155 (397)
                      +...+.+.++.+|||+|||+|..+..++...  +.+|+++|+|+.+++.+++++++.|+. ++++...|+..+       
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-------  126 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF-------  126 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC-------
T ss_pred             HHHHcCCCCcCEEEEECCcccHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-------
Confidence            4455667889999999999999999999654  349999999999999999999988874 699999998654       


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                            + ++||+|++.-.          .....    ..       ....+|++           +.++|||||+++.+
T Consensus       127 ------~-~~fD~v~~~~~----------l~~~~----~~-------~~~~~l~~-----------~~~~LkpgG~l~~~  167 (287)
T 1kpg_A          127 ------D-EPVDRIVSIGA----------FEHFG----HE-------RYDAFFSL-----------AHRLLPADGVMLLH  167 (287)
T ss_dssp             ------C-CCCSEEEEESC----------GGGTC----TT-------THHHHHHH-----------HHHHSCTTCEEEEE
T ss_pred             ------C-CCeeEEEEeCc----------hhhcC----hH-------HHHHHHHH-----------HHHhcCCCCEEEEE
Confidence                  2 68999997321          11111    00       11566777           88999999999998


Q ss_pred             ecCC
Q psy17793        236 TCSL  239 (397)
Q Consensus       236 TCS~  239 (397)
                      +...
T Consensus       168 ~~~~  171 (287)
T 1kpg_A          168 TITG  171 (287)
T ss_dssp             EEEE
T ss_pred             EecC
Confidence            7553

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.25  E-value=3.2e-11  Score=110.96  Aligned_cols=111  Identities=15%  Similarity=0.216  Sum_probs=87.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ..++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++++...+  ++++..+|+....           +.
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~-----------~~  107 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYD-----------FE  107 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCC-----------CC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccC-----------CC
Confidence            5678899999999999999999975 46799999999999999999887665  7999999998763           23


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS  240 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~  240 (397)
                       ++||+|++...          .....    ..       ...++|++           +.++|||||++++++....
T Consensus       108 -~~fD~v~~~~~----------l~~~~----~~-------~~~~~l~~-----------~~~~LkpgG~l~~~~~~~~  152 (234)
T 3dtn_A          108 -EKYDMVVSALS----------IHHLE----DE-------DKKELYKR-----------SYSILKESGIFINADLVHG  152 (234)
T ss_dssp             -SCEEEEEEESC----------GGGSC----HH-------HHHHHHHH-----------HHHHEEEEEEEEEEEECBC
T ss_pred             -CCceEEEEeCc----------cccCC----HH-------HHHHHHHH-----------HHHhcCCCcEEEEEEecCC
Confidence             78999998543          11111    11       11457788           8999999999999876543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.24  E-value=4.3e-11  Score=108.01  Aligned_cols=103  Identities=17%  Similarity=0.246  Sum_probs=85.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      ++.+|||+|||+|..+..++... +..+|+++|+|+.+++.++++++.+++.++++...|+....            ..+
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------------~~~  131 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP------------SEP  131 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC------------CCS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC------------ccC
Confidence            47899999999999999999875 46799999999999999999999999988999999997652            236


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      +||+|+++.-              .  ..           ..++..           +.++|||||.+++....
T Consensus       132 ~~D~i~~~~~--------------~--~~-----------~~~l~~-----------~~~~L~~gG~l~~~~~~  167 (207)
T 1jsx_A          132 PFDGVISRAF--------------A--SL-----------NDMVSW-----------CHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             CEEEEECSCS--------------S--SH-----------HHHHHH-----------HTTSEEEEEEEEEEESS
T ss_pred             CcCEEEEecc--------------C--CH-----------HHHHHH-----------HHHhcCCCcEEEEEeCC
Confidence            7999997421              0  11           466777           89999999999987443

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.24  E-value=1.5e-11  Score=117.60  Aligned_cols=110  Identities=18%  Similarity=0.173  Sum_probs=88.7

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      ...++.+|||+|||+|..+..++...  +.+|+++|+|+.+++.++++++..|+. ++++..+|+..+.           
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------  145 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-----------  145 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-----------
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC-----------
Confidence            67889999999999999999999875  359999999999999999999999984 6999999998753           


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      +..++||+|++.-.          .....         .    ...+|++           +.++|||||++++++..
T Consensus       146 ~~~~~fD~v~~~~~----------l~~~~---------~----~~~~l~~-----------~~~~LkpgG~l~~~~~~  189 (297)
T 2o57_A          146 CEDNSYDFIWSQDA----------FLHSP---------D----KLKVFQE-----------CARVLKPRGVMAITDPM  189 (297)
T ss_dssp             SCTTCEEEEEEESC----------GGGCS---------C----HHHHHHH-----------HHHHEEEEEEEEEEEEE
T ss_pred             CCCCCEeEEEecch----------hhhcC---------C----HHHHHHH-----------HHHHcCCCeEEEEEEec
Confidence            45578999997321          11111         1    1567777           89999999999998753

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.24  E-value=4.1e-11  Score=121.68  Aligned_cols=81  Identities=17%  Similarity=0.287  Sum_probs=70.3

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      ++++.++++|||+|||+|..+..+|..   ..+|+|+|+|+.+++.+++|++.+|++ ++++.+|+..+.          
T Consensus       285 ~~~~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~----------  350 (425)
T 2jjq_A          285 VSELVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVS----------  350 (425)
T ss_dssp             HHHHCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCC----------
T ss_pred             hhccCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcC----------
Confidence            333567889999999999999999884   469999999999999999999999998 999999998763          


Q ss_pred             hhcccCccEEEEcCCCCC
Q psy17793        160 KLQKESFDRILLDAPCSG  177 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg  177 (397)
                        . .+||+|++|||.+|
T Consensus       351 --~-~~fD~Vv~dPPr~g  365 (425)
T 2jjq_A          351 --V-KGFDTVIVDPPRAG  365 (425)
T ss_dssp             --C-TTCSEEEECCCTTC
T ss_pred             --c-cCCCEEEEcCCccc
Confidence              1 27999999999655

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.23  E-value=5.2e-11  Score=105.27  Aligned_cols=141  Identities=11%  Similarity=0.048  Sum_probs=93.4

Q ss_pred             EechhHHHHHhccCC--CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccc
Q psy17793         69 LQNLPSILAGHYLDV--QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST  146 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~--~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~  146 (397)
                      +..+.+..+...+..  .++.+|||+|||+|..+..++..   . +|+|+|+|+.+++.         ..++++.++|+.
T Consensus         5 ~P~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~---~-~v~gvD~s~~~~~~---------~~~~~~~~~d~~   71 (170)
T 3q87_B            5 EPGEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKR---N-TVVSTDLNIRALES---------HRGGNLVRADLL   71 (170)
T ss_dssp             CCCHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTT---S-EEEEEESCHHHHHT---------CSSSCEEECSTT
T ss_pred             CcCccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhc---C-cEEEEECCHHHHhc---------ccCCeEEECChh
Confidence            344455555555665  67889999999999999988874   2 99999999999887         356889999987


Q ss_pred             cccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q psy17793        147 RINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLL  226 (397)
Q Consensus       147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lL  226 (397)
                      ..            +..++||+|++|||.........  ....    ...        .+++.+           +.+.|
T Consensus        72 ~~------------~~~~~fD~i~~n~~~~~~~~~~~--~~~~----~~~--------~~~~~~-----------~~~~l  114 (170)
T 3q87_B           72 CS------------INQESVDVVVFNPPYVPDTDDPI--IGGG----YLG--------REVIDR-----------FVDAV  114 (170)
T ss_dssp             TT------------BCGGGCSEEEECCCCBTTCCCTT--TBCC----GGG--------CHHHHH-----------HHHHC
T ss_pred             hh------------cccCCCCEEEECCCCccCCcccc--ccCC----cch--------HHHHHH-----------HHhhC
Confidence            64            23468999999999654321111  0000    011        122333           34444


Q ss_pred             cCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecC
Q psy17793        227 KKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL  264 (397)
Q Consensus       227 kpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~  264 (397)
                       |||++++++.+.   .+.+.+..++++. +++...+.
T Consensus       115 -pgG~l~~~~~~~---~~~~~l~~~l~~~-gf~~~~~~  147 (170)
T 3q87_B          115 -TVGMLYLLVIEA---NRPKEVLARLEER-GYGTRILK  147 (170)
T ss_dssp             -CSSEEEEEEEGG---GCHHHHHHHHHHT-TCEEEEEE
T ss_pred             -CCCEEEEEEecC---CCHHHHHHHHHHC-CCcEEEEE
Confidence             999999886543   4555667777776 57665543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.23  E-value=2.8e-11  Score=111.93  Aligned_cols=108  Identities=19%  Similarity=0.262  Sum_probs=84.4

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhh
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      +.+.++++|||+|||+|..+.++|...+ .++|+|+|+|+.+++.++++++..  .++.++.+|+......       .+
T Consensus        70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~-------~~  139 (230)
T 1fbn_A           70 MPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEY-------AN  139 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGG-------TT
T ss_pred             cCCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccc-------cc
Confidence            4467889999999999999999999864 679999999999999999998765  6899999998762100       01


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      +. +.||+|+.|+|-                  ...       ...+|++           +.++|||||+++.+
T Consensus       140 ~~-~~~D~v~~~~~~------------------~~~-------~~~~l~~-----------~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          140 IV-EKVDVIYEDVAQ------------------PNQ-------AEILIKN-----------AKWFLKKGGYGMIA  177 (230)
T ss_dssp             TS-CCEEEEEECCCS------------------TTH-------HHHHHHH-----------HHHHEEEEEEEEEE
T ss_pred             cC-ccEEEEEEecCC------------------hhH-------HHHHHHH-----------HHHhCCCCcEEEEE
Confidence            23 679999988751                  111       1345667           88899999999886

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.22  E-value=9.8e-12  Score=118.66  Aligned_cols=122  Identities=16%  Similarity=0.188  Sum_probs=94.7

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRIN  149 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~  149 (397)
                      .+..+.+...++...++.+|||+|||+|..+..++...+++.+|+|+|+|+.+++.+++++...+. ++++...|+..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~   85 (284)
T 3gu3_A            7 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIE   85 (284)
T ss_dssp             HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCC
T ss_pred             hHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcC
Confidence            334445555556777889999999999999999998765567999999999999999999988776 7999999998763


Q ss_pred             ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793        150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD  229 (397)
Q Consensus       150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg  229 (397)
                                 + .++||+|++...          .....         .   . .++|++           +.++||||
T Consensus        86 -----------~-~~~fD~v~~~~~----------l~~~~---------~---~-~~~l~~-----------~~~~Lkpg  119 (284)
T 3gu3_A           86 -----------L-NDKYDIAICHAF----------LLHMT---------T---P-ETMLQK-----------MIHSVKKG  119 (284)
T ss_dssp             -----------C-SSCEEEEEEESC----------GGGCS---------S---H-HHHHHH-----------HHHTEEEE
T ss_pred             -----------c-CCCeeEEEECCh----------hhcCC---------C---H-HHHHHH-----------HHHHcCCC
Confidence                       2 368999998442          01111         1   1 466777           89999999


Q ss_pred             cEEEEEecC
Q psy17793        230 GILVYCTCS  238 (397)
Q Consensus       230 G~lvysTCS  238 (397)
                      |.++..+..
T Consensus       120 G~l~~~~~~  128 (284)
T 3gu3_A          120 GKIICFEPH  128 (284)
T ss_dssp             EEEEEEECC
T ss_pred             CEEEEEecc
Confidence            999987655

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.22  E-value=5.8e-11  Score=108.51  Aligned_cols=111  Identities=15%  Similarity=0.246  Sum_probs=86.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEEcccccccccchhhHHH
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-----SIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-----~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      +++.+|||+|||+|..+..++..   +.+|+++|+|+.+++.+++++...++.     ++.+...|+..+.         
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------   96 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS---------   96 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC---------
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC---------
Confidence            47889999999999999999885   469999999999999999999888763     5889999987653         


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                        +..++||+|++...          .....  + ...       ..++|++           +.++|||||++++++..
T Consensus        97 --~~~~~~D~v~~~~~----------l~~~~--~-~~~-------~~~~l~~-----------~~~~L~pgG~l~~~~~~  143 (235)
T 3sm3_A           97 --FHDSSFDFAVMQAF----------LTSVP--D-PKE-------RSRIIKE-----------VFRVLKPGAYLYLVEFG  143 (235)
T ss_dssp             --SCTTCEEEEEEESC----------GGGCC--C-HHH-------HHHHHHH-----------HHHHEEEEEEEEEEEEB
T ss_pred             --CCCCceeEEEEcch----------hhcCC--C-HHH-------HHHHHHH-----------HHHHcCCCeEEEEEECC
Confidence              34578999998533          11111  0 111       1467777           89999999999998765


Q ss_pred             C
Q psy17793        239 L  239 (397)
Q Consensus       239 ~  239 (397)
                      .
T Consensus       144 ~  144 (235)
T 3sm3_A          144 Q  144 (235)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.22  E-value=1.3e-11  Score=114.49  Aligned_cols=115  Identities=15%  Similarity=0.159  Sum_probs=85.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      +.++.+|||+|||+|..+..++..  ...+|+++|+|+.+++.++++++..+ .+++++.+|+..+.         .++.
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~---------~~~~  125 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVA---------PTLP  125 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHG---------GGSC
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhc--CCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhh---------cccC
Confidence            567889999999999999988663  33489999999999999999988877 57999999987652         1245


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      .++||+|++|.-  +. .    .....   . .       ....++++           +.++|||||+|++.+++
T Consensus       126 ~~~fD~V~~d~~--~~-~----~~~~~---~-~-------~~~~~l~~-----------~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          126 DGHFDGILYDTY--PL-S----EETWH---T-H-------QFNFIKNH-----------AFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             TTCEEEEEECCC--CC-B----GGGTT---T-H-------HHHHHHHT-----------HHHHEEEEEEEEECCHH
T ss_pred             CCceEEEEECCc--cc-c----hhhhh---h-h-------hHHHHHHH-----------HHHhcCCCeEEEEEecC
Confidence            678999999621  00 0    00000   0 1       11456777           89999999999987554

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.21  E-value=2.8e-11  Score=114.25  Aligned_cols=115  Identities=19%  Similarity=0.214  Sum_probs=91.3

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d  155 (397)
                      ++.......++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++++...++.++++...|+..+.      
T Consensus        28 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~------  100 (276)
T 3mgg_A           28 LLHHDTVYPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP------  100 (276)
T ss_dssp             HHHTTCCCCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC------
T ss_pred             HHhhcccCCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCC------
Confidence            33444456789999999999999999999874 46799999999999999999999999999999999998753      


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                           +..++||+|++.-.          .....  +.           ..+|++           +.++|||||.+++.
T Consensus       101 -----~~~~~fD~v~~~~~----------l~~~~--~~-----------~~~l~~-----------~~~~L~pgG~l~~~  141 (276)
T 3mgg_A          101 -----FEDSSFDHIFVCFV----------LEHLQ--SP-----------EEALKS-----------LKKVLKPGGTITVI  141 (276)
T ss_dssp             -----SCTTCEEEEEEESC----------GGGCS--CH-----------HHHHHH-----------HHHHEEEEEEEEEE
T ss_pred             -----CCCCCeeEEEEech----------hhhcC--CH-----------HHHHHH-----------HHHHcCCCcEEEEE
Confidence                 34578999998432          11111  01           356777           88999999999997


Q ss_pred             e
Q psy17793        236 T  236 (397)
Q Consensus       236 T  236 (397)
                      +
T Consensus       142 ~  142 (276)
T 3mgg_A          142 E  142 (276)
T ss_dssp             E
T ss_pred             E
Confidence            5

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.21  E-value=4.3e-11  Score=119.49  Aligned_cols=116  Identities=17%  Similarity=0.230  Sum_probs=89.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-----C-C--CcEEEEEcccccccccchh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL-----Q-L--SSIQTHVYDSTRINTSSQI  154 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~-----g-~--~~v~~~~~D~~~~~~~~~~  154 (397)
                      +.++.+|||+|||+|..+..++...++.++|+++|+|+.+++.++++++++     | .  .+++++.+|+..+...   
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~---  157 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATA---  157 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGC---
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhc---
Confidence            567899999999999999999998766789999999999999999999876     4 3  5799999999875210   


Q ss_pred             hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793        155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY  234 (397)
Q Consensus       155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy  234 (397)
                        ...++..++||+|+++..          .....  +           ...+|++           +.++|||||+|++
T Consensus       158 --~~~~~~~~~fD~V~~~~~----------l~~~~--d-----------~~~~l~~-----------~~r~LkpgG~l~i  201 (383)
T 4fsd_A          158 --EPEGVPDSSVDIVISNCV----------CNLST--N-----------KLALFKE-----------IHRVLRDGGELYF  201 (383)
T ss_dssp             --BSCCCCTTCEEEEEEESC----------GGGCS--C-----------HHHHHHH-----------HHHHEEEEEEEEE
T ss_pred             --ccCCCCCCCEEEEEEccc----------hhcCC--C-----------HHHHHHH-----------HHHHcCCCCEEEE
Confidence              000245678999998543          11111  0           1567777           9999999999999


Q ss_pred             Eec
Q psy17793        235 CTC  237 (397)
Q Consensus       235 sTC  237 (397)
                      ++-
T Consensus       202 ~~~  204 (383)
T 4fsd_A          202 SDV  204 (383)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            853

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.21  E-value=5.5e-11  Score=113.03  Aligned_cols=106  Identities=17%  Similarity=0.183  Sum_probs=84.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      ++.+|||+|||+|..+..++..   +.+|+|+|+|+.+++.++++++..|+ .+++++.+|+..+.          .+..
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~  134 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVA----------SHLE  134 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTG----------GGCS
T ss_pred             CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhh----------hhcC
Confidence            3679999999999999999885   56999999999999999999999998 57999999998763          2356


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                      ++||+|++.-.          .....         .   . .++|++           +.++|||||++++++.
T Consensus       135 ~~fD~v~~~~~----------l~~~~---------~---~-~~~l~~-----------~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          135 TPVDLILFHAV----------LEWVA---------D---P-RSVLQT-----------LWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             SCEEEEEEESC----------GGGCS---------C---H-HHHHHH-----------HHHTEEEEEEEEEEEE
T ss_pred             CCceEEEECch----------hhccc---------C---H-HHHHHH-----------HHHHcCCCeEEEEEEe
Confidence            78999998432          11111         1   1 457777           8999999999999865

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.21  E-value=2.6e-11  Score=116.84  Aligned_cols=114  Identities=17%  Similarity=0.157  Sum_probs=88.7

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      .+.++.+|||+|||+|..+..+|....+..+|+++|+|+.+++.++++++..|+.+ ++++.+|+..+.           
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------  183 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD-----------  183 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC-----------
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC-----------
Confidence            35788999999999999999886333457799999999999999999999999865 999999998763           


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      +. ++||+|+++.+.          ....  + ..       ...++|++           +.++|||||++++++.+
T Consensus       184 ~~-~~fD~v~~~~~~----------~~~~--~-~~-------~~~~~l~~-----------~~~~LkpgG~l~i~~~~  229 (305)
T 3ocj_A          184 TR-EGYDLLTSNGLN----------IYEP--D-DA-------RVTELYRR-----------FWQALKPGGALVTSFLT  229 (305)
T ss_dssp             CC-SCEEEEECCSSG----------GGCC--C-HH-------HHHHHHHH-----------HHHHEEEEEEEEEECCC
T ss_pred             cc-CCeEEEEECChh----------hhcC--C-HH-------HHHHHHHH-----------HHHhcCCCeEEEEEecC
Confidence            33 789999985531          1110  0 11       12457777           89999999999998643

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.21  E-value=1.6e-11  Score=128.19  Aligned_cols=162  Identities=12%  Similarity=-0.008  Sum_probs=113.1

Q ss_pred             CCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCC-----------------cEEEEEeCCHHHHHHH
Q psy17793         64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT-----------------GTLIALDKSKPRVTKL  126 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~-----------------~~V~avD~s~~rl~~l  126 (397)
                      .|.|+-.+.-+.+++.++.+.++.+|||.|||+|++.+.++..+...                 ..++|+|+++.+++.+
T Consensus       148 ~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA  227 (541)
T 2ar0_A          148 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA  227 (541)
T ss_dssp             --CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred             CCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence            47777777777778888999999999999999999999988765321                 3799999999999999


Q ss_pred             HHHHHHhCCCc-----EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHH
Q psy17793        127 EETIKKLQLSS-----IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA  201 (397)
Q Consensus       127 ~~n~~~~g~~~-----v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~  201 (397)
                      +.|+...|+.+     +.+.++|+....          ......||+|++|||+++..... ......   .+     -.
T Consensus       228 ~~nl~l~gi~~~~~~~~~I~~gDtL~~~----------~~~~~~fD~Vv~NPPf~~~~~~~-~~~~~~---~~-----~~  288 (541)
T 2ar0_A          228 LMNCLLHDIEGNLDHGGAIRLGNTLGSD----------GENLPKAHIVATNPPFGSAAGTN-ITRTFV---HP-----TS  288 (541)
T ss_dssp             HHHHHTTTCCCBGGGTBSEEESCTTSHH----------HHTSCCEEEEEECCCCTTCSSCC-CCSCCS---SC-----CS
T ss_pred             HHHHHHhCCCccccccCCeEeCCCcccc----------cccccCCeEEEECCCcccccchh-hHhhcC---CC-----CC
Confidence            99999888875     788889886541          12346799999999998865211 111110   00     00


Q ss_pred             HHHHHHHHHHhhhhccccccccccccCCcEEEEEecC--CCccccHHHH-HHHHHHC
Q psy17793        202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS--LSVEENEAVI-AWILHRH  255 (397)
Q Consensus       202 ~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS--~~~eEnE~vV-~~~L~~~  255 (397)
                      ..+..++.+           +.++||+||++++.+..  +.....+..+ +++++++
T Consensus       289 ~~~~~Fl~~-----------~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~~~  334 (541)
T 2ar0_A          289 NKQLCFMQH-----------IIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC  334 (541)
T ss_dssp             CHHHHHHHH-----------HHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE
T ss_pred             chHHHHHHH-----------HHHHhCCCCEEEEEecCcceecCcHHHHHHHHHhhcC
Confidence            112356777           89999999999887643  2222233444 5555543

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.20  E-value=1.3e-11  Score=112.43  Aligned_cols=113  Identities=13%  Similarity=0.096  Sum_probs=83.1

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh------------CCCcEEEEEcccccc
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL------------QLSSIQTHVYDSTRI  148 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~------------g~~~v~~~~~D~~~~  148 (397)
                      +.+.++.+|||+|||+|..+..+|..   +.+|+|+|+|+.+++.++++.+..            +..++++.++|+..+
T Consensus        18 l~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l   94 (203)
T 1pjz_A           18 LNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   94 (203)
T ss_dssp             HCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             cccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence            45567899999999999999999985   458999999999999998876431            235789999999876


Q ss_pred             cccchhhHHHhhhcc-cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793        149 NTSSQIDIERMKLQK-ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK  227 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~-~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk  227 (397)
                      .           +.. ++||+|++...          .....    ..       ...+++++           +.++||
T Consensus        95 ~-----------~~~~~~fD~v~~~~~----------l~~l~----~~-------~~~~~l~~-----------~~r~Lk  131 (203)
T 1pjz_A           95 T-----------ARDIGHCAAFYDRAA----------MIALP----AD-------MRERYVQH-----------LEALMP  131 (203)
T ss_dssp             T-----------HHHHHSEEEEEEESC----------GGGSC----HH-------HHHHHHHH-----------HHHHSC
T ss_pred             C-----------cccCCCEEEEEECcc----------hhhCC----HH-------HHHHHHHH-----------HHHHcC
Confidence            3           222 68999996221          00011    11       12456777           899999


Q ss_pred             CCcEEEEEecCC
Q psy17793        228 KDGILVYCTCSL  239 (397)
Q Consensus       228 pgG~lvysTCS~  239 (397)
                      |||++++.+...
T Consensus       132 pgG~~~l~~~~~  143 (203)
T 1pjz_A          132 QACSGLLITLEY  143 (203)
T ss_dssp             SEEEEEEEEESS
T ss_pred             CCcEEEEEEEec
Confidence            999977776554

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.20  E-value=4.2e-11  Score=110.04  Aligned_cols=119  Identities=18%  Similarity=0.200  Sum_probs=91.8

Q ss_pred             CCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc
Q psy17793         64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY  143 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~  143 (397)
                      .|..+.+......+...+.+.++.+|||+|||+|..+..++...   .+|+++|+|+.+++.+++++...+  ++++..+
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~  123 (231)
T 1vbf_A           49 PGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN--NIKLILG  123 (231)
T ss_dssp             TTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS--SEEEEES
T ss_pred             CCCccCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEEC
Confidence            34444454444556667778899999999999999999999863   799999999999999999998877  8999999


Q ss_pred             ccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q psy17793        144 DSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI  223 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~  223 (397)
                      |+....           ...++||+|+++.++..               +.              ..           +.
T Consensus       124 d~~~~~-----------~~~~~fD~v~~~~~~~~---------------~~--------------~~-----------~~  152 (231)
T 1vbf_A          124 DGTLGY-----------EEEKPYDRVVVWATAPT---------------LL--------------CK-----------PY  152 (231)
T ss_dssp             CGGGCC-----------GGGCCEEEEEESSBBSS---------------CC--------------HH-----------HH
T ss_pred             Cccccc-----------ccCCCccEEEECCcHHH---------------HH--------------HH-----------HH
Confidence            987632           12468999999765311               11              12           66


Q ss_pred             ccccCCcEEEEEecC
Q psy17793        224 PLLKKDGILVYCTCS  238 (397)
Q Consensus       224 ~lLkpgG~lvysTCS  238 (397)
                      ++|||||++++++.+
T Consensus       153 ~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          153 EQLKEGGIMILPIGV  167 (231)
T ss_dssp             HTEEEEEEEEEEECS
T ss_pred             HHcCCCcEEEEEEcC
Confidence            789999999998654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.19  E-value=7.3e-11  Score=107.57  Aligned_cols=108  Identities=17%  Similarity=0.206  Sum_probs=85.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..+..++...   .+|+++|+|+.+++.++++++..+ .++++..+|+..+.           +..
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~-----------~~~  101 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLS-----------FED  101 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCC-----------SCT
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCC-----------CCC
Confidence            347899999999999999888852   399999999999999999999888 67999999987652           344


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      ++||+|+++++.          ....    ...       ..++|++           +.++|||||++++.++.
T Consensus       102 ~~~D~v~~~~~~----------~~~~----~~~-------~~~~l~~-----------~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          102 KTFDYVIFIDSI----------VHFE----PLE-------LNQVFKE-----------VRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             TCEEEEEEESCG----------GGCC----HHH-------HHHHHHH-----------HHHHEEEEEEEEEEEEC
T ss_pred             CcEEEEEEcCch----------HhCC----HHH-------HHHHHHH-----------HHHHcCCCcEEEEEecC
Confidence            689999997651          0011    111       1567777           89999999999998664

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.18  E-value=6.7e-11  Score=109.87  Aligned_cols=136  Identities=13%  Similarity=0.116  Sum_probs=97.0

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      .+...++.+|||+|||+|..+..++...  ..+|+++|+|+.+++.+++++...  .++++...|+..+.          
T Consensus        88 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~----------  153 (254)
T 1xtp_A           88 SLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETAT----------  153 (254)
T ss_dssp             TSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCC----------
T ss_pred             hhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCC----------
Confidence            3455678999999999999999998864  468999999999999999987655  57999999987652          


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                       +..++||+|++.-.          .....    ..       ...++|++           +.++|||||++++++...
T Consensus       154 -~~~~~fD~v~~~~~----------l~~~~----~~-------~~~~~l~~-----------~~~~LkpgG~l~i~~~~~  200 (254)
T 1xtp_A          154 -LPPNTYDLIVIQWT----------AIYLT----DA-------DFVKFFKH-----------CQQALTPNGYIFFKENCS  200 (254)
T ss_dssp             -CCSSCEEEEEEESC----------GGGSC----HH-------HHHHHHHH-----------HHHHEEEEEEEEEEEEBC
T ss_pred             -CCCCCeEEEEEcch----------hhhCC----HH-------HHHHHHHH-----------HHHhcCCCeEEEEEecCC
Confidence             34568999997321          11111    11       12667788           899999999999987422


Q ss_pred             Ccc------------ccHHHHHHHHHHCCCcEEEec
Q psy17793        240 SVE------------ENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       240 ~~e------------EnE~vV~~~L~~~~~~~l~~~  263 (397)
                      ...            -..+.+..++++. +++.+.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~~~~~  235 (254)
T 1xtp_A          201 TGDRFLVDKEDSSLTRSDIHYKRLFNES-GVRVVKE  235 (254)
T ss_dssp             --CCEEEETTTTEEEBCHHHHHHHHHHH-TCCEEEE
T ss_pred             CcccceecccCCcccCCHHHHHHHHHHC-CCEEEEe
Confidence            111            1345566666665 4655544

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.18  E-value=4.8e-11  Score=114.47  Aligned_cols=115  Identities=15%  Similarity=0.160  Sum_probs=86.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh--CCCcEEEEEcccccccccchhhHHHhhh
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL--QLSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~--g~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      .++.+|||+|||+|..+..++..+....+|+|+|+|+.+++.++++++..  +..+++++.+|+..+...   +  ...+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~---~--~~~~  109 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFL---G--ADSV  109 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGG---C--TTTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcc---c--cccc
Confidence            57889999999999999999987646789999999999999999999987  346799999999876310   0  0001


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      ..++||+|++.-.                  + ..+ .    ..++|++           +.++|||||.|++.+++
T Consensus       110 ~~~~fD~V~~~~~------------------l-~~~-~----~~~~l~~-----------~~~~LkpgG~l~i~~~~  151 (299)
T 3g5t_A          110 DKQKIDMITAVEC------------------A-HWF-D----FEKFQRS-----------AYANLRKDGTIAIWGYA  151 (299)
T ss_dssp             TSSCEEEEEEESC------------------G-GGS-C----HHHHHHH-----------HHHHEEEEEEEEEEEEE
T ss_pred             cCCCeeEEeHhhH------------------H-HHh-C----HHHHHHH-----------HHHhcCCCcEEEEEecC
Confidence            1268999998432                  0 111 1    1567777           88999999999886554

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.18  E-value=1e-10  Score=109.02  Aligned_cols=110  Identities=15%  Similarity=0.144  Sum_probs=84.3

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ...+...++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.+++++.   ..++++..+|+..+.        
T Consensus        37 ~~~~~~~~~~~vLD~GcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~--------  103 (253)
T 3g5l_A           37 KKMLPDFNQKTVLDLGCGFGWHCIYAAEH--GAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIA--------  103 (253)
T ss_dssp             HTTCCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCC--------
T ss_pred             HHhhhccCCCEEEEECCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCC--------
Confidence            34555668899999999999999999885  23499999999999999988765   457999999997653        


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                         +..++||+|++.-.          .         ..+..    ..++|++           +.++|||||++++++.
T Consensus       104 ---~~~~~fD~v~~~~~----------l---------~~~~~----~~~~l~~-----------~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A          104 ---IEPDAYNVVLSSLA----------L---------HYIAS----FDDICKK-----------VYINLKSSGSFIFSVE  146 (253)
T ss_dssp             ---CCTTCEEEEEEESC----------G---------GGCSC----HHHHHHH-----------HHHHEEEEEEEEEEEE
T ss_pred             ---CCCCCeEEEEEchh----------h---------hhhhh----HHHHHHH-----------HHHHcCCCcEEEEEeC
Confidence               34578999998321          0         11111    1567777           8999999999999854

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.17  E-value=6e-11  Score=107.31  Aligned_cols=113  Identities=12%  Similarity=0.136  Sum_probs=86.4

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d  155 (397)
                      +...+....++.+|||+|||+|..+..++..   +.+|+++|+|+.+++.+++    .+..++++..+|+..+       
T Consensus        37 ~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~-------  102 (218)
T 3ou2_A           37 ALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW-------  102 (218)
T ss_dssp             HHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC-------
T ss_pred             HHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC-------
Confidence            3333334677889999999999999999986   4699999999999999987    6777899999999775       


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                           +..++||+|++.--          .....    ..       ....+|++           +.++|||||.++++
T Consensus       103 -----~~~~~~D~v~~~~~----------l~~~~----~~-------~~~~~l~~-----------~~~~L~pgG~l~~~  145 (218)
T 3ou2_A          103 -----TPDRQWDAVFFAHW----------LAHVP----DD-------RFEAFWES-----------VRSAVAPGGVVEFV  145 (218)
T ss_dssp             -----CCSSCEEEEEEESC----------GGGSC----HH-------HHHHHHHH-----------HHHHEEEEEEEEEE
T ss_pred             -----CCCCceeEEEEech----------hhcCC----HH-------HHHHHHHH-----------HHHHcCCCeEEEEE
Confidence                 24578999997321          11111    11       12567777           89999999999999


Q ss_pred             ecCC
Q psy17793        236 TCSL  239 (397)
Q Consensus       236 TCS~  239 (397)
                      +.+.
T Consensus       146 ~~~~  149 (218)
T 3ou2_A          146 DVTD  149 (218)
T ss_dssp             EECC
T ss_pred             eCCC
Confidence            7764

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.17  E-value=1.1e-10  Score=105.17  Aligned_cols=121  Identities=13%  Similarity=0.155  Sum_probs=85.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.+++++..  ..++.+..+|+..+.           +..
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~-----------~~~  105 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLG--GFPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLD-----------FPS  105 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHT--TCCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCC-----------SCS
T ss_pred             CCCCeEEEECCCCcHHHHHHHHc--CCCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCC-----------CCC
Confidence            67889999999999999998885  223899999999999999998764  357899999987652           345


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      ++||+|+++.+....-......+...    .....    ...++|++           +.++|||||++++.+.+
T Consensus       106 ~~fD~v~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~l~~-----------~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A          106 ASFDVVLEKGTLDALLAGERDPWTVS----SEGVH----TVDQVLSE-----------VSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             SCEEEEEEESHHHHHTTTCSCTTSCC----HHHHH----HHHHHHHH-----------HHHHEEEEEEEEEEESC
T ss_pred             CcccEEEECcchhhhccccccccccc----cchhH----HHHHHHHH-----------HHHhCcCCCEEEEEeCC
Confidence            78999998765211000000000001    11222    22677888           99999999999998765

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.17  E-value=1.9e-10  Score=115.70  Aligned_cols=112  Identities=12%  Similarity=0.088  Sum_probs=85.6

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH-------HHhCC--CcEEEEEcccccc
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETI-------KKLQL--SSIQTHVYDSTRI  148 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~-------~~~g~--~~v~~~~~D~~~~  148 (397)
                      ...+.+++|++|||+|||+|..+..+|... +..+|+|+|+++.+++.+++++       +.+|+  .+|+++++|+...
T Consensus       166 l~~l~l~~gd~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~l  244 (438)
T 3uwp_A          166 IDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE  244 (438)
T ss_dssp             HHHHCCCTTCEEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSH
T ss_pred             HHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCC
Confidence            345678999999999999999999999865 4457999999999999998765       44676  5799999999876


Q ss_pred             cccchhhHHHhhhcc--cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q psy17793        149 NTSSQIDIERMKLQK--ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLL  226 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~--~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lL  226 (397)
                      .           +..  ..||+|+++++|..                +..        .+.|.+           ..+.|
T Consensus       245 p-----------~~d~~~~aDVVf~Nn~~F~----------------pdl--------~~aL~E-----------i~RvL  278 (438)
T 3uwp_A          245 E-----------WRERIANTSVIFVNNFAFG----------------PEV--------DHQLKE-----------RFANM  278 (438)
T ss_dssp             H-----------HHHHHHTCSEEEECCTTCC----------------HHH--------HHHHHH-----------HHTTS
T ss_pred             c-----------cccccCCccEEEEcccccC----------------chH--------HHHHHH-----------HHHcC
Confidence            2           111  46999999887521                111        233445           77899


Q ss_pred             cCCcEEEEEe
Q psy17793        227 KKDGILVYCT  236 (397)
Q Consensus       227 kpgG~lvysT  236 (397)
                      ||||+||.+.
T Consensus       279 KPGGrIVssE  288 (438)
T 3uwp_A          279 KEGGRIVSSK  288 (438)
T ss_dssp             CTTCEEEESS
T ss_pred             CCCcEEEEee
Confidence            9999998653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.17  E-value=1e-09  Score=96.91  Aligned_cols=130  Identities=15%  Similarity=0.069  Sum_probs=94.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      +.++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++     .++.+...|+....           +.
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~-----------~~  104 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQ-----------IS  104 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSC-----------CC
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCC-----------CC
Confidence            457889999999999999999885   469999999999999998875     35788899987652           34


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE  242 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e  242 (397)
                      .++||+|++++++-.         ...    ...       ..++|+.           +.++|||||++++++..... 
T Consensus       105 ~~~~D~i~~~~~~~~---------~~~----~~~-------~~~~l~~-----------~~~~l~~~G~l~~~~~~~~~-  152 (195)
T 3cgg_A          105 ETDFDLIVSAGNVMG---------FLA----EDG-------REPALAN-----------IHRALGADGRAVIGFGAGRG-  152 (195)
T ss_dssp             CCCEEEEEECCCCGG---------GSC----HHH-------HHHHHHH-----------HHHHEEEEEEEEEEEETTSS-
T ss_pred             CCceeEEEECCcHHh---------hcC----hHH-------HHHHHHH-----------HHHHhCCCCEEEEEeCCCCC-
Confidence            568999999755211         111    111       2567777           88999999999987654332 


Q ss_pred             ccHHHHHHHHHHCCCcEEEecC
Q psy17793        243 ENEAVIAWILHRHPEVELVQTL  264 (397)
Q Consensus       243 EnE~vV~~~L~~~~~~~l~~~~  264 (397)
                      ...+.+...+++. +++++...
T Consensus       153 ~~~~~~~~~l~~~-Gf~~~~~~  173 (195)
T 3cgg_A          153 WVFGDFLEVAERV-GLELENAF  173 (195)
T ss_dssp             CCHHHHHHHHHHH-TEEEEEEE
T ss_pred             cCHHHHHHHHHHc-CCEEeeee
Confidence            3444566666665 57776543

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.17  E-value=4.1e-11  Score=116.31  Aligned_cols=93  Identities=18%  Similarity=0.187  Sum_probs=76.4

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      +...|.+++|.+|||+|||+|+.+..++...+ .++|+|+|+|+.+++.+++|++.+| .+++++++|+..+...     
T Consensus        18 ~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~-----   90 (301)
T 1m6y_A           18 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFL-----   90 (301)
T ss_dssp             HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHH-----
T ss_pred             HHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHH-----
Confidence            34567788999999999999999999999864 6799999999999999999999988 7899999998765210     


Q ss_pred             HHhhhcccCccEEEEcCCCCC
Q psy17793        157 ERMKLQKESFDRILLDAPCSG  177 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg  177 (397)
                       ........||.|++|+|||.
T Consensus        91 -l~~~g~~~~D~Vl~D~gvSs  110 (301)
T 1m6y_A           91 -LKTLGIEKVDGILMDLGVST  110 (301)
T ss_dssp             -HHHTTCSCEEEEEEECSCCH
T ss_pred             -HHhcCCCCCCEEEEcCccch
Confidence             00011147999999999985

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.17  E-value=8.4e-11  Score=113.62  Aligned_cols=117  Identities=18%  Similarity=0.238  Sum_probs=90.6

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchh
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQI  154 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~  154 (397)
                      .+...+.+.++.+|||+|||+|..+..++...  +.+|+++|+|+.+++.++++++..|+. ++++..+|+..+      
T Consensus        81 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------  152 (318)
T 2fk8_A           81 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF------  152 (318)
T ss_dssp             HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC------
T ss_pred             HHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC------
Confidence            34455667889999999999999999999875  459999999999999999999999885 499999998654      


Q ss_pred             hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793        155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY  234 (397)
Q Consensus       155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy  234 (397)
                             . ++||+|++.-.          .....    ..       ...++|++           +.++|||||++++
T Consensus       153 -------~-~~fD~v~~~~~----------l~~~~----~~-------~~~~~l~~-----------~~~~LkpgG~l~~  192 (318)
T 2fk8_A          153 -------A-EPVDRIVSIEA----------FEHFG----HE-------NYDDFFKR-----------CFNIMPADGRMTV  192 (318)
T ss_dssp             -------C-CCCSEEEEESC----------GGGTC----GG-------GHHHHHHH-----------HHHHSCTTCEEEE
T ss_pred             -------C-CCcCEEEEeCh----------HHhcC----HH-------HHHHHHHH-----------HHHhcCCCcEEEE
Confidence                   2 57999997422          11111    00       11566777           8899999999999


Q ss_pred             EecCCC
Q psy17793        235 CTCSLS  240 (397)
Q Consensus       235 sTCS~~  240 (397)
                      .+....
T Consensus       193 ~~~~~~  198 (318)
T 2fk8_A          193 QSSVSY  198 (318)
T ss_dssp             EEEECC
T ss_pred             EEeccC
Confidence            877643

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.17  E-value=9.3e-11  Score=112.44  Aligned_cols=113  Identities=14%  Similarity=0.147  Sum_probs=86.2

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEEcccccccccchhh
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL---SSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~---~~v~~~~~D~~~~~~~~~~d  155 (397)
                      ..+...++ +|||+|||+|..+..++..   +.+|+|+|+|+.+++.+++++...+.   .+++++++|+..+.      
T Consensus        77 ~~~~~~~~-~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~------  146 (299)
T 3g2m_A           77 TRTGPVSG-PVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA------  146 (299)
T ss_dssp             HHHCCCCS-CEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC------
T ss_pred             HhhCCCCC-cEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC------
Confidence            34444444 9999999999999998885   46899999999999999999998875   57999999998763      


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHH-HHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA-NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY  234 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~-~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy  234 (397)
                           + .++||.|++..                     ..+..+. ....++|++           +.++|||||+|++
T Consensus       147 -----~-~~~fD~v~~~~---------------------~~~~~~~~~~~~~~l~~-----------~~~~L~pgG~l~~  188 (299)
T 3g2m_A          147 -----L-DKRFGTVVISS---------------------GSINELDEADRRGLYAS-----------VREHLEPGGKFLL  188 (299)
T ss_dssp             -----C-SCCEEEEEECH---------------------HHHTTSCHHHHHHHHHH-----------HHHHEEEEEEEEE
T ss_pred             -----c-CCCcCEEEECC---------------------cccccCCHHHHHHHHHH-----------HHHHcCCCcEEEE
Confidence                 2 57899998611                     1111111 122677888           9999999999999


Q ss_pred             EecCC
Q psy17793        235 CTCSL  239 (397)
Q Consensus       235 sTCS~  239 (397)
                      ++...
T Consensus       189 ~~~~~  193 (299)
T 3g2m_A          189 SLAMS  193 (299)
T ss_dssp             EEECC
T ss_pred             EeecC
Confidence            97653

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.17  E-value=2.1e-10  Score=106.35  Aligned_cols=134  Identities=13%  Similarity=0.104  Sum_probs=97.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      ++.+|||+|||+|..+..++...  ..+|+++|+|+.+++.+++++...+..++++...|+..+.           +..+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  145 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-----------PEPD  145 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-----------CCSS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC-----------CCCC
Confidence            58899999999999998887753  4689999999999999999988876567899999987653           3445


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc---
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV---  241 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~---  241 (397)
                      +||+|+++-.          .....    ...       ..++|++           +.++|||||++++++.....   
T Consensus       146 ~fD~v~~~~~----------l~~~~----~~~-------~~~~l~~-----------~~~~LkpgG~l~i~~~~~~~~~~  193 (241)
T 2ex4_A          146 SYDVIWIQWV----------IGHLT----DQH-------LAEFLRR-----------CKGSLRPNGIIVIKDNMAQEGVI  193 (241)
T ss_dssp             CEEEEEEESC----------GGGSC----HHH-------HHHHHHH-----------HHHHEEEEEEEEEEEEEBSSSEE
T ss_pred             CEEEEEEcch----------hhhCC----HHH-------HHHHHHH-----------HHHhcCCCeEEEEEEccCCCcce
Confidence            8999998532          11111    111       1567777           89999999999997643211   


Q ss_pred             --------cccHHHHHHHHHHCCCcEEEecC
Q psy17793        242 --------EENEAVIAWILHRHPEVELVQTL  264 (397)
Q Consensus       242 --------eEnE~vV~~~L~~~~~~~l~~~~  264 (397)
                              ..+.+.+..++++. +++.+...
T Consensus       194 ~~~~~~~~~~~~~~~~~~l~~a-Gf~~~~~~  223 (241)
T 2ex4_A          194 LDDVDSSVCRDLDVVRRIICSA-GLSLLAEE  223 (241)
T ss_dssp             EETTTTEEEEBHHHHHHHHHHT-TCCEEEEE
T ss_pred             ecccCCcccCCHHHHHHHHHHc-CCeEEEee
Confidence                    11456677777776 56666543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.16  E-value=1.5e-10  Score=110.06  Aligned_cols=109  Identities=20%  Similarity=0.244  Sum_probs=85.9

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      .+...++.+|||+|||+|..+..++..   +.+|+|+|+|+.+++.+++++...|+ ++++..+|+....          
T Consensus       115 ~~~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----------  180 (286)
T 3m70_A          115 AAKIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAAN----------  180 (286)
T ss_dssp             HHHHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCC----------
T ss_pred             HhhccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEecccccc----------
Confidence            344457889999999999999999885   45999999999999999999999998 8999999998753          


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                       . .++||+|+++.+.          ....    ...       ...+|++           +.++|||||++++.+
T Consensus       181 -~-~~~fD~i~~~~~~----------~~~~----~~~-------~~~~l~~-----------~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          181 -I-QENYDFIVSTVVF----------MFLN----RER-------VPSIIKN-----------MKEHTNVGGYNLIVA  223 (286)
T ss_dssp             -C-CSCEEEEEECSSG----------GGSC----GGG-------HHHHHHH-----------HHHTEEEEEEEEEEE
T ss_pred             -c-cCCccEEEEccch----------hhCC----HHH-------HHHHHHH-----------HHHhcCCCcEEEEEE
Confidence             2 5789999996641          1111    111       1467777           889999999977653

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.15  E-value=1.9e-11  Score=118.81  Aligned_cols=127  Identities=14%  Similarity=0.092  Sum_probs=82.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeC----CHHHHHHHHHHHHHhCCCcEEEEEc-ccccccccchhhHH
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDK----SKPRVTKLEETIKKLQLSSIQTHVY-DSTRINTSSQIDIE  157 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~----s~~rl~~l~~n~~~~g~~~v~~~~~-D~~~~~~~~~~d~~  157 (397)
                      .++|.+|||+|||||++|..+|+.    ++|+|+|+    ++.+++.+  ..+..+.++|.+..+ |+..+         
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l---------  144 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFI---------  144 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTS---------
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccC---------
Confidence            467899999999999999988885    57999999    55443211  112233356888888 88765         


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                          ..++||+|++|.+|+ +|.              .......  +..+|..           +.++|||||.++..  
T Consensus       145 ----~~~~fD~V~sd~~~~-~g~--------------~~~d~~~--~l~~L~~-----------~~~~LkpGG~~v~k--  190 (305)
T 2p41_A          145 ----PPERCDTLLCDIGES-SPN--------------PTVEAGR--TLRVLNL-----------VENWLSNNTQFCVK--  190 (305)
T ss_dssp             ----CCCCCSEEEECCCCC-CSS--------------HHHHHHH--HHHHHHH-----------HHHHCCTTCEEEEE--
T ss_pred             ----CcCCCCEEEECCccc-cCc--------------chhhHHH--HHHHHHH-----------HHHHhCCCCEEEEE--
Confidence                235899999999876 442              1111110  1135666           88999999998875  


Q ss_pred             CCCccccH--HHHHHHHHHCCCc
Q psy17793        238 SLSVEENE--AVIAWILHRHPEV  258 (397)
Q Consensus       238 S~~~eEnE--~vV~~~L~~~~~~  258 (397)
                      .+.+++.+  +.+..+.+.+..+
T Consensus       191 v~~~~~~~~~~~l~~l~~~f~~v  213 (305)
T 2p41_A          191 VLNPYMSSVIEKMEALQRKHGGA  213 (305)
T ss_dssp             ESCCCSHHHHHHHHHHHHHHCCE
T ss_pred             eCCCCCchHHHHHHHHHHHcCCE
Confidence            34443322  3444444445443

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.15  E-value=4.3e-11  Score=114.74  Aligned_cols=113  Identities=18%  Similarity=0.225  Sum_probs=85.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh--C---------CCcEEEEEccccccccc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL--Q---------LSSIQTHVYDSTRINTS  151 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~--g---------~~~v~~~~~D~~~~~~~  151 (397)
                      ...+.+|||+|||+|..+..++..  +..+|+++|+|+.+++.+++++ ++  +         -.+++++.+|+....  
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l--  147 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFI--  147 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHH--
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHh--
Confidence            345679999999999999988885  4579999999999999999998 54  3         246999999987652  


Q ss_pred             chhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcE
Q psy17793        152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI  231 (397)
Q Consensus       152 ~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~  231 (397)
                              .. .++||+|++|+|+.. +.             ...+     ...++++.           +.++|||||+
T Consensus       148 --------~~-~~~fD~Ii~d~~~~~-~~-------------~~~l-----~~~~~l~~-----------~~~~L~pgG~  188 (281)
T 1mjf_A          148 --------KN-NRGFDVIIADSTDPV-GP-------------AKVL-----FSEEFYRY-----------VYDALNNPGI  188 (281)
T ss_dssp             --------HH-CCCEEEEEEECCCCC-------------------T-----TSHHHHHH-----------HHHHEEEEEE
T ss_pred             --------cc-cCCeeEEEECCCCCC-Cc-------------chhh-----hHHHHHHH-----------HHHhcCCCcE
Confidence                    11 468999999998421 10             0110     02456677           8899999999


Q ss_pred             EEEEecCC
Q psy17793        232 LVYCTCSL  239 (397)
Q Consensus       232 lvysTCS~  239 (397)
                      ++..+++.
T Consensus       189 lv~~~~~~  196 (281)
T 1mjf_A          189 YVTQAGSV  196 (281)
T ss_dssp             EEEEEEET
T ss_pred             EEEEcCCc
Confidence            99987664

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.15  E-value=1.1e-10  Score=108.69  Aligned_cols=117  Identities=13%  Similarity=0.141  Sum_probs=88.2

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRIN  149 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~  149 (397)
                      |.....-+...+.+.++.+|||+|||+|..+..++... +..+|+++|+|+.+++.++++     ..++.+..+|+..+.
T Consensus        18 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~   91 (259)
T 2p35_A           18 RTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWK   91 (259)
T ss_dssp             GGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCC
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcC
Confidence            33333344455667788999999999999999999876 357899999999999999887     357899999987652


Q ss_pred             ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793        150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD  229 (397)
Q Consensus       150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg  229 (397)
                                  ..++||+|++...          .         ..+..    ...+|++           +.++||||
T Consensus        92 ------------~~~~fD~v~~~~~----------l---------~~~~~----~~~~l~~-----------~~~~L~pg  125 (259)
T 2p35_A           92 ------------PAQKADLLYANAV----------F---------QWVPD----HLAVLSQ-----------LMDQLESG  125 (259)
T ss_dssp             ------------CSSCEEEEEEESC----------G---------GGSTT----HHHHHHH-----------HGGGEEEE
T ss_pred             ------------ccCCcCEEEEeCc----------h---------hhCCC----HHHHHHH-----------HHHhcCCC
Confidence                        3468999998432          0         00101    1567777           99999999


Q ss_pred             cEEEEEecC
Q psy17793        230 GILVYCTCS  238 (397)
Q Consensus       230 G~lvysTCS  238 (397)
                      |++++++..
T Consensus       126 G~l~~~~~~  134 (259)
T 2p35_A          126 GVLAVQMPD  134 (259)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEeCC
Confidence            999998754

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.15  E-value=1.8e-10  Score=110.57  Aligned_cols=116  Identities=17%  Similarity=0.170  Sum_probs=83.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-----------------------------
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-----------------------------  135 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-----------------------------  135 (397)
                      ++.+|||+|||+|..+..+|...+ ..+|+|+|+|+.+++.++++++..+.                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            688999999999999999999863 46999999999999999999887653                             


Q ss_pred             -----------------------------CcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCccccc
Q psy17793        136 -----------------------------SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYN  186 (397)
Q Consensus       136 -----------------------------~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~  186 (397)
                                                   .+|++..+|+.....      ....+..++||+|++.--            
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~------~~~~~~~~~fD~I~~~~v------------  186 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRD------DLVEAQTPEYDVVLCLSL------------  186 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSH------HHHTTCCCCEEEEEEESC------------
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCcc------ccccccCCCcCEEEEChH------------
Confidence                                         369999999875420      011234578999998221            


Q ss_pred             ccCccchHHHHH--HHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        187 ANSFLNLDKKIK--SYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       187 ~~s~~~~~~~~~--~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                             -..+.  .-.....++|++           +.++|||||+|+..+.
T Consensus       187 -------l~~ihl~~~~~~~~~~l~~-----------~~~~LkpGG~lil~~~  221 (292)
T 3g07_A          187 -------TKWVHLNWGDEGLKRMFRR-----------IYRHLRPGGILVLEPQ  221 (292)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHH-----------HHHHEEEEEEEEEECC
T ss_pred             -------HHHhhhcCCHHHHHHHHHH-----------HHHHhCCCcEEEEecC
Confidence                   11111  011123678888           9999999999999754

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.15  E-value=8.2e-11  Score=107.27  Aligned_cols=115  Identities=16%  Similarity=0.155  Sum_probs=83.3

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH----HHHHhCCCcEEEEEcccccccccchhh
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE----TIKKLQLSSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~----n~~~~g~~~v~~~~~D~~~~~~~~~~d  155 (397)
                      .+.++++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.+.+    +..+.++.++++.++|+..+.      
T Consensus        22 ~l~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~------   94 (218)
T 3mq2_A           22 QLRSQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP------   94 (218)
T ss_dssp             HHHTTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC------
T ss_pred             HhhccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC------
Confidence            4456789999999999999999999974 46899999999998886443    334567788999999998763      


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                           +..+. |.|.+..+             +     .....+...-+..+|++           +.++|||||+++++
T Consensus        95 -----~~~~~-d~v~~~~~-------------~-----~~~~~~~~~~~~~~l~~-----------~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           95 -----PLSGV-GELHVLMP-------------W-----GSLLRGVLGSSPEMLRG-----------MAAVCRPGASFLVA  139 (218)
T ss_dssp             -----SCCCE-EEEEEESC-------------C-----HHHHHHHHTSSSHHHHH-----------HHHTEEEEEEEEEE
T ss_pred             -----CCCCC-CEEEEEcc-------------c-----hhhhhhhhccHHHHHHH-----------HHHHcCCCcEEEEE
Confidence                 23344 77765443             1     11111111122567888           99999999999985


Q ss_pred             e
Q psy17793        236 T  236 (397)
Q Consensus       236 T  236 (397)
                      .
T Consensus       140 ~  140 (218)
T 3mq2_A          140 L  140 (218)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.14  E-value=8e-11  Score=106.08  Aligned_cols=112  Identities=14%  Similarity=0.072  Sum_probs=84.4

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ...++.+|||+|||+|..+..++..  .+.+|+|+|+|+.+++.++++++..+ .++.+...|+..+.           +
T Consensus        20 ~~~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~-----------~   85 (209)
T 2p8j_A           20 ESNLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLP-----------F   85 (209)
T ss_dssp             HSSSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCC-----------S
T ss_pred             ccCCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCC-----------C
Confidence            3456889999999999986555443  34699999999999999999998887 46888999987652           3


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                      ..++||+|++...          .....    ..       ...+++++           +.++|||||.+++++.+.
T Consensus        86 ~~~~fD~v~~~~~----------l~~~~----~~-------~~~~~l~~-----------~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           86 KDESMSFVYSYGT----------IFHMR----KN-------DVKEAIDE-----------IKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             CTTCEEEEEECSC----------GGGSC----HH-------HHHHHHHH-----------HHHHEEEEEEEEEEEEET
T ss_pred             CCCceeEEEEcCh----------HHhCC----HH-------HHHHHHHH-----------HHHHcCCCcEEEEEEecc
Confidence            4578999997422          11111    11       12567777           899999999999998764

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.14  E-value=6.2e-11  Score=109.97  Aligned_cols=113  Identities=17%  Similarity=0.165  Sum_probs=83.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCC-HHHHHHH---HHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS-KPRVTKL---EETIKKLQLSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s-~~rl~~l---~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      +++++|||+|||+|..+..+|.. .....|+|+|+| +.+++.+   ++++++.|+.++++..+|+..+...        
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~-~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~--------   93 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAIN-DQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFE--------   93 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHT-CTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGG--------
T ss_pred             CCCCEEEEEeccCcHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhh--------
Confidence            67889999999999999999875 356799999999 5555555   8888888999999999999876311        


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                       + ...+|.|.++.|             |     .............+|++           +.++|||||++++++
T Consensus        94 -~-~d~v~~i~~~~~-------------~-----~~~~~~~~~~~~~~l~~-----------~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A           94 -L-KNIADSISILFP-------------W-----GTLLEYVIKPNRDILSN-----------VADLAKKEAHFEFVT  139 (225)
T ss_dssp             -G-TTCEEEEEEESC-------------C-----HHHHHHHHTTCHHHHHH-----------HHTTEEEEEEEEEEE
T ss_pred             -c-cCeEEEEEEeCC-------------C-----cHHhhhhhcchHHHHHH-----------HHHhcCCCcEEEEEE
Confidence             1 256888888776             1     11111111112457778           999999999999843

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.14  E-value=6.3e-11  Score=113.87  Aligned_cols=92  Identities=18%  Similarity=0.211  Sum_probs=76.3

Q ss_pred             EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEccccc
Q psy17793         69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTR  147 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~  147 (397)
                      .+......+...+.+.++++|||+|||+|..|..++..   ..+|+|+|+|+.+++.++++++..+. .+++++.+|+.+
T Consensus        12 ~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~   88 (285)
T 1zq9_A           12 KNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK   88 (285)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceec
Confidence            34444455666778889999999999999999999986   35899999999999999999987776 579999999987


Q ss_pred             ccccchhhHHHhhhcccCccEEEEcCCCC
Q psy17793        148 INTSSQIDIERMKLQKESFDRILLDAPCS  176 (397)
Q Consensus       148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCS  176 (397)
                      ..           +  ..||.|++|+|+.
T Consensus        89 ~~-----------~--~~fD~vv~nlpy~  104 (285)
T 1zq9_A           89 TD-----------L--PFFDTCVANLPYQ  104 (285)
T ss_dssp             SC-----------C--CCCSEEEEECCGG
T ss_pred             cc-----------c--hhhcEEEEecCcc
Confidence            52           2  3699999999954

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.14  E-value=1.1e-10  Score=105.05  Aligned_cols=127  Identities=16%  Similarity=0.066  Sum_probs=93.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES  165 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~  165 (397)
                      +.+|||+|||+|..+..++..   +.+|+|+|+|+.+++.++++     ..+++++.+|+..+.           +..++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~-----------~~~~~  102 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQT-----HPSVTFHHGTITDLS-----------DSPKR  102 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGGG-----------GSCCC
T ss_pred             CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHh-----CCCCeEEeCcccccc-----------cCCCC
Confidence            789999999999999999885   45899999999999999877     347889999987652           45578


Q ss_pred             ccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc----
Q psy17793        166 FDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV----  241 (397)
Q Consensus       166 fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~----  241 (397)
                      ||+|++.-.          .....    ...       ..++|++           +.++|||||++++++.....    
T Consensus       103 fD~v~~~~~----------l~~~~----~~~-------~~~~l~~-----------~~~~L~pgG~l~i~~~~~~~~~~~  150 (203)
T 3h2b_A          103 WAGLLAWYS----------LIHMG----PGE-------LPDALVA-----------LRMAVEDGGGLLMSFFSGPSLEPM  150 (203)
T ss_dssp             EEEEEEESS----------STTCC----TTT-------HHHHHHH-----------HHHTEEEEEEEEEEEECCSSCEEE
T ss_pred             eEEEEehhh----------HhcCC----HHH-------HHHHHHH-----------HHHHcCCCcEEEEEEccCCchhhh
Confidence            999998432          01111    011       1566777           89999999999998754322    


Q ss_pred             --------cccHHHHHHHHHHCCCcEEEecC
Q psy17793        242 --------EENEAVIAWILHRHPEVELVQTL  264 (397)
Q Consensus       242 --------eEnE~vV~~~L~~~~~~~l~~~~  264 (397)
                              .-..+.+..++++. +++++.+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~l~~~-Gf~~~~~~  180 (203)
T 3h2b_A          151 YHPVATAYRWPLPELAQALETA-GFQVTSSH  180 (203)
T ss_dssp             CCSSSCEEECCHHHHHHHHHHT-TEEEEEEE
T ss_pred             hchhhhhccCCHHHHHHHHHHC-CCcEEEEE
Confidence                    12356677788877 67777654

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.14  E-value=6.3e-11  Score=116.64  Aligned_cols=116  Identities=17%  Similarity=0.145  Sum_probs=87.6

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ..+...++.+|||+|||+|..+..++..  +..+|+|+|+|+ +++.++++++.+|+ ++++++.+|+..+.        
T Consensus        58 ~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------  126 (340)
T 2fyt_A           58 QNPHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH--------  126 (340)
T ss_dssp             HCGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC--------
T ss_pred             hhhhhcCCCEEEEeeccCcHHHHHHHHc--CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc--------
Confidence            3455678899999999999999988885  346999999997 99999999999998 57999999998752        


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                         ++.++||+|++++....          ..  . ...+       ..+|..           +.++|||||+++.+.|
T Consensus       127 ---~~~~~~D~Ivs~~~~~~----------l~--~-~~~~-------~~~l~~-----------~~~~LkpgG~lip~~~  172 (340)
T 2fyt_A          127 ---LPVEKVDVIISEWMGYF----------LL--F-ESML-------DSVLYA-----------KNKYLAKGGSVYPDIC  172 (340)
T ss_dssp             ---CSCSCEEEEEECCCBTT----------BT--T-TCHH-------HHHHHH-----------HHHHEEEEEEEESCEE
T ss_pred             ---CCCCcEEEEEEcCchhh----------cc--C-HHHH-------HHHHHH-----------HHhhcCCCcEEEcccc
Confidence               34468999999762110          00  0 0111       446666           7889999999986555


Q ss_pred             CC
Q psy17793        238 SL  239 (397)
Q Consensus       238 S~  239 (397)
                      ++
T Consensus       173 ~~  174 (340)
T 2fyt_A          173 TI  174 (340)
T ss_dssp             EE
T ss_pred             eE
Confidence            43

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.14  E-value=1.6e-10  Score=103.78  Aligned_cols=106  Identities=16%  Similarity=0.211  Sum_probs=83.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ..++ +|||+|||+|..+..++..   +.+|+++|+|+.+++.++++++..+. ++.+...|+....           +.
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----------~~   91 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFD-----------IV   91 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBS-----------CC
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcC-----------CC
Confidence            3566 9999999999999888874   46999999999999999999999887 7899999987652           34


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      .++||+|++...            ...    ...       ..++|++           +.++|||||++++++..
T Consensus        92 ~~~fD~v~~~~~------------~~~----~~~-------~~~~l~~-----------~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A           92 ADAWEGIVSIFC------------HLP----SSL-------RQQLYPK-----------VYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             TTTCSEEEEECC------------CCC----HHH-------HHHHHHH-----------HHTTCCSSEEEEEEEEC
T ss_pred             cCCccEEEEEhh------------cCC----HHH-------HHHHHHH-----------HHHhcCCCcEEEEEEec
Confidence            568999997321            011    111       2567777           89999999999998754

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.13  E-value=1.8e-10  Score=109.39  Aligned_cols=112  Identities=16%  Similarity=0.189  Sum_probs=86.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      +.++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.+++++...+. .++.+..+|+....           +
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~  128 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH-----------M  128 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC-----------C
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccc-----------c
Confidence            367889999999999999988875  356999999999999999999998887 46999999987652           2


Q ss_pred             -cccCccEEEEcCCCCCCCCCcccccc-cCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        162 -QKESFDRILLDAPCSGFGQRPMFYNA-NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       162 -~~~~fD~Il~DpPCSg~G~~p~~~~~-~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                       ..++||+|+++-.         +... ..    ..       ...++|++           +.++|||||+++++++.
T Consensus       129 ~~~~~fD~v~~~~~---------l~~~~~~----~~-------~~~~~l~~-----------~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          129 DLGKEFDVISSQFS---------FHYAFST----SE-------SLDIAQRN-----------IARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             CCSSCEEEEEEESC---------GGGGGSS----HH-------HHHHHHHH-----------HHHTEEEEEEEEEEEEC
T ss_pred             CCCCCcCEEEECch---------hhhhcCC----HH-------HHHHHHHH-----------HHHhcCCCCEEEEEECC
Confidence             3568999998432         0000 01    11       12567888           99999999999998754

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.13  E-value=1.2e-10  Score=113.00  Aligned_cols=115  Identities=18%  Similarity=0.234  Sum_probs=84.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEEcccccccccchhhHHH
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL--QL--SSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~--g~--~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      ...+.+|||+|||+|..+..++.. .+..+|+++|+|+.+++.+++++...  ++  .+++++.+|+.....        
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~--------  163 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK--------  163 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH--------
T ss_pred             CCCCCEEEEECCCchHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh--------
Confidence            345689999999999999988875 24579999999999999999998763  33  579999999876531        


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                        ...++||+|++|+|... +  |           ...     ....++++.           +.++|||||+++..+.+
T Consensus       164 --~~~~~fD~Ii~d~~~~~-~--~-----------~~~-----l~~~~~l~~-----------~~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          164 --QNQDAFDVIITDSSDPM-G--P-----------AES-----LFKESYYQL-----------MKTALKEDGVLCCQGEC  211 (304)
T ss_dssp             --TCSSCEEEEEEECC------------------------------CHHHHH-----------HHHHEEEEEEEEEEEEC
T ss_pred             --hCCCCceEEEECCCCCC-C--c-----------chh-----hhHHHHHHH-----------HHhccCCCeEEEEecCC
Confidence              13468999999987210 0  0           000     112566777           88999999999988754

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.13  E-value=5.3e-10  Score=101.23  Aligned_cols=127  Identities=13%  Similarity=0.081  Sum_probs=92.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ..++.+|||+|||+|..+..++..   +.+|+++|+|+.+++.+++++      ++.+...|+..+.            .
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~------------~   99 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQLD------------A   99 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGCC------------C
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccCC------------C
Confidence            457889999999999999999885   469999999999999999887      3566778877652            3


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE  242 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e  242 (397)
                      .++||+|++...          .....    ...       ...+|++           +.++|||||++++++......
T Consensus       100 ~~~fD~v~~~~~----------l~~~~----~~~-------~~~~l~~-----------~~~~LkpgG~l~~~~~~~~~~  147 (211)
T 3e23_A          100 IDAYDAVWAHAC----------LLHVP----RDE-------LADVLKL-----------IWRALKPGGLFYASYKSGEGE  147 (211)
T ss_dssp             CSCEEEEEECSC----------GGGSC----HHH-------HHHHHHH-----------HHHHEEEEEEEEEEEECCSSC
T ss_pred             CCcEEEEEecCc----------hhhcC----HHH-------HHHHHHH-----------HHHhcCCCcEEEEEEcCCCcc
Confidence            578999998432          11111    111       2567777           899999999999987654322


Q ss_pred             -----------ccHHHHHHHHHHCCC-cEEEec
Q psy17793        243 -----------ENEAVIAWILHRHPE-VELVQT  263 (397)
Q Consensus       243 -----------EnE~vV~~~L~~~~~-~~l~~~  263 (397)
                                 -+.+.+..++++. + |+.+.+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~a-G~f~~~~~  179 (211)
T 3e23_A          148 GRDKLARYYNYPSEEWLRARYAEA-GTWASVAV  179 (211)
T ss_dssp             EECTTSCEECCCCHHHHHHHHHHH-CCCSEEEE
T ss_pred             cccccchhccCCCHHHHHHHHHhC-CCcEEEEE
Confidence                       2556666777765 4 655544

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.12  E-value=8.7e-11  Score=106.85  Aligned_cols=110  Identities=16%  Similarity=0.194  Sum_probs=83.3

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhh
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      +.+.++.+|||+|||+|..+..++..   +.+|+++|+|+.+++.+++++.    .++++..+|+..+.           
T Consensus        41 ~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~-----------  102 (220)
T 3hnr_A           41 VVNKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFE-----------  102 (220)
T ss_dssp             HHHTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCC-----------
T ss_pred             hhccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcC-----------
Confidence            34457889999999999999999885   5699999999999999988765    56889999998763           


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS  240 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~  240 (397)
                      +. ++||+|++.-.          .....    ..       .+..+|++           +.++|||||.++.++....
T Consensus       103 ~~-~~fD~v~~~~~----------l~~~~----~~-------~~~~~l~~-----------~~~~LkpgG~l~i~~~~~~  149 (220)
T 3hnr_A          103 VP-TSIDTIVSTYA----------FHHLT----DD-------EKNVAIAK-----------YSQLLNKGGKIVFADTIFA  149 (220)
T ss_dssp             CC-SCCSEEEEESC----------GGGSC----HH-------HHHHHHHH-----------HHHHSCTTCEEEEEEECBS
T ss_pred             CC-CCeEEEEECcc----------hhcCC----hH-------HHHHHHHH-----------HHHhcCCCCEEEEEecccc
Confidence            23 78999998432          11111    11       11457777           8899999999999875443


Q ss_pred             c
Q psy17793        241 V  241 (397)
Q Consensus       241 ~  241 (397)
                      .
T Consensus       150 ~  150 (220)
T 3hnr_A          150 D  150 (220)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.12  E-value=1.3e-10  Score=106.73  Aligned_cols=103  Identities=13%  Similarity=0.126  Sum_probs=78.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ..++.+|||+|||+|..+..++..   ..+|+|+|+|+.+++.+++++..    ++++..+|+....            .
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~------------~  100 (250)
T 2p7i_A           40 FFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQ------------L  100 (250)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCC------------C
T ss_pred             hcCCCcEEEECCCCCHHHHHHHHh---CCcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcC------------c
Confidence            356789999999999999988874   34799999999999999887543    7899999987652            3


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccc-ccccCCcEEEEEecC
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI-PLLKKDGILVYCTCS  238 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~-~lLkpgG~lvysTCS  238 (397)
                      .++||+|++.--          ....            ... .++|++           +. ++|||||+++.++..
T Consensus       101 ~~~fD~v~~~~~----------l~~~------------~~~-~~~l~~-----------~~~~~LkpgG~l~i~~~~  143 (250)
T 2p7i_A          101 PRRYDNIVLTHV----------LEHI------------DDP-VALLKR-----------INDDWLAEGGRLFLVCPN  143 (250)
T ss_dssp             SSCEEEEEEESC----------GGGC------------SSH-HHHHHH-----------HHHTTEEEEEEEEEEEEC
T ss_pred             CCcccEEEEhhH----------HHhh------------cCH-HHHHHH-----------HHHHhcCCCCEEEEEcCC
Confidence            568999997211          1111            111 467788           99 999999999998743

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.11  E-value=1.1e-10  Score=110.04  Aligned_cols=91  Identities=18%  Similarity=0.316  Sum_probs=72.3

Q ss_pred             HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHH------HHHHHHHHHHHhCC-CcEEEEEcc-cc
Q psy17793         75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP------RVTKLEETIKKLQL-SSIQTHVYD-ST  146 (397)
Q Consensus        75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~------rl~~l~~n~~~~g~-~~v~~~~~D-~~  146 (397)
                      ..+...+.+.++.+|||+|||+|..+..++...+..++|+++|+|+.      +++.++++++..++ .++++...| ..
T Consensus        33 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  112 (275)
T 3bkx_A           33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS  112 (275)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence            34445667889999999999999999999997655579999999997      99999999998887 479999998 32


Q ss_pred             cccccchhhHHHhhhcccCccEEEEcCC
Q psy17793        147 RINTSSQIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       147 ~~~~~~~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                      ...         .++..++||+|++...
T Consensus       113 ~~~---------~~~~~~~fD~v~~~~~  131 (275)
T 3bkx_A          113 DDL---------GPIADQHFDRVVLAHS  131 (275)
T ss_dssp             TCC---------GGGTTCCCSEEEEESC
T ss_pred             hcc---------CCCCCCCEEEEEEccc
Confidence            211         1245578999998543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.11  E-value=3.6e-10  Score=111.42  Aligned_cols=115  Identities=15%  Similarity=0.069  Sum_probs=88.0

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ..+...++.+|||+|||+|..+..++..  +..+|+|+|+|+ +++.++++++.+|+ ++|+++.+|+..+.        
T Consensus        44 ~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--------  112 (348)
T 2y1w_A           44 QNHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--------  112 (348)
T ss_dssp             HTGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--------
T ss_pred             hccccCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC--------
Confidence            3455668899999999999999988874  456999999996 88999999999998 57999999998752        


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                          ..++||+|+++++...          +.    ....       ...+.+           +.++|||||.++.+++
T Consensus       113 ----~~~~~D~Ivs~~~~~~----------~~----~~~~-------~~~l~~-----------~~~~LkpgG~li~~~~  156 (348)
T 2y1w_A          113 ----LPEQVDIIISEPMGYM----------LF----NERM-------LESYLH-----------AKKYLKPSGNMFPTIG  156 (348)
T ss_dssp             ----CSSCEEEEEECCCBTT----------BT----TTSH-------HHHHHH-----------GGGGEEEEEEEESCEE
T ss_pred             ----CCCceeEEEEeCchhc----------CC----hHHH-------HHHHHH-----------HHhhcCCCeEEEEecC
Confidence                2357999999776211          11    0110       334555           8899999999998877


Q ss_pred             CCC
Q psy17793        238 SLS  240 (397)
Q Consensus       238 S~~  240 (397)
                      ++.
T Consensus       157 ~~~  159 (348)
T 2y1w_A          157 DVH  159 (348)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            654

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.11  E-value=1.2e-10  Score=114.89  Aligned_cols=113  Identities=17%  Similarity=0.128  Sum_probs=87.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ..++.+|||+|||+|..+..++..  +..+|+|+|+| .+++.++++++.+|+.+ |+++.+|+..+.           +
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~  129 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVE-----------L  129 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCC-----------C
T ss_pred             cCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHcc-----------C
Confidence            457889999999999999998885  45699999999 59999999999999876 999999998763           3


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS  240 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~  240 (397)
                      +.++||+|++++......       ..      ...       ..+|..           +.++|||||+++.+.+++.
T Consensus       130 ~~~~fD~Iis~~~~~~l~-------~~------~~~-------~~~l~~-----------~~r~LkpgG~li~~~~~~~  177 (349)
T 3q7e_A          130 PVEKVDIIISEWMGYCLF-------YE------SML-------NTVLHA-----------RDKWLAPDGLIFPDRATLY  177 (349)
T ss_dssp             SSSCEEEEEECCCBBTBT-------BT------CCH-------HHHHHH-----------HHHHEEEEEEEESCEEEEE
T ss_pred             CCCceEEEEEcccccccc-------Cc------hhH-------HHHHHH-----------HHHhCCCCCEEccccceEE
Confidence            457899999976521110       00      111       455666           7789999999987766643

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.10  E-value=1.7e-10  Score=106.25  Aligned_cols=131  Identities=15%  Similarity=0.130  Sum_probs=95.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ..++.+|||+|||+|..+..++..   +.+|+|+|+|+.+++.++++.   ...++.++.+|+..+.           +.
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~-----------~~  113 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLP-----------FE  113 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCS-----------SC
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCC-----------CC
Confidence            357889999999999999999885   468999999999999998774   3357999999998763           34


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE  242 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e  242 (397)
                      .++||+|++.-.          .....  +.           .++|++           +.++|||||++++++......
T Consensus       114 ~~~fD~v~~~~~----------l~~~~--~~-----------~~~l~~-----------~~~~L~pgG~l~i~~~~~~~~  159 (242)
T 3l8d_A          114 NEQFEAIMAINS----------LEWTE--EP-----------LRALNE-----------IKRVLKSDGYACIAILGPTAK  159 (242)
T ss_dssp             TTCEEEEEEESC----------TTSSS--CH-----------HHHHHH-----------HHHHEEEEEEEEEEEECTTCG
T ss_pred             CCCccEEEEcCh----------Hhhcc--CH-----------HHHHHH-----------HHHHhCCCeEEEEEEcCCcch
Confidence            578999997322          00111  11           456777           889999999999987433211


Q ss_pred             ------------------ccHHHHHHHHHHCCCcEEEecCc
Q psy17793        243 ------------------ENEAVIAWILHRHPEVELVQTLP  265 (397)
Q Consensus       243 ------------------EnE~vV~~~L~~~~~~~l~~~~~  265 (397)
                                        -..+.+..++++. +++.+....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~~~~~~  199 (242)
T 3l8d_A          160 PRENSYPRLYGKDVVCNTMMPWEFEQLVKEQ-GFKVVDGIG  199 (242)
T ss_dssp             GGGGGGGGGGTCCCSSCCCCHHHHHHHHHHT-TEEEEEEEE
T ss_pred             hhhhhhhhhccccccccCCCHHHHHHHHHHc-CCEEEEeec
Confidence                              2234567777777 677776543

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.10  E-value=3e-10  Score=118.63  Aligned_cols=177  Identities=14%  Similarity=0.106  Sum_probs=116.5

Q ss_pred             CCCcEEEechhHHHHHhccC----CCCCCeEEEEcCCCChHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHHhCC-
Q psy17793         63 DSSMGILQNLPSILAGHYLD----VQPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKLEETIKKLQL-  135 (397)
Q Consensus        63 ~~g~~~~Qd~~S~l~~~~L~----~~~g~~VLDlcagpG~kt~~lA~~~~--~~~~V~avD~s~~rl~~l~~n~~~~g~-  135 (397)
                      ..|.||-...-+.+++.++.    +.++.+|+|.|||+|++.+.++..+.  ....++|+|+++..++.++.|+...|+ 
T Consensus       195 ~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~  274 (542)
T 3lkd_A          195 KAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP  274 (542)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             cCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC
Confidence            45778887777888888877    67889999999999999999988763  356899999999999999999999998 


Q ss_pred             -CcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCC-cccccccCccchHHHHHHHHHHHHHHHHHHhh
Q psy17793        136 -SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQR-PMFYNANSFLNLDKKIKSYANIQKKLLQAVYR  213 (397)
Q Consensus       136 -~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~-p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~  213 (397)
                       .++.+.++|.....-        +.....+||+|++|||+++.... ........+... ..+..-...+..++.+   
T Consensus       275 ~~~~~I~~gDtL~~d~--------p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~-G~~~~~s~~~~~Fl~~---  342 (542)
T 3lkd_A          275 IENQFLHNADTLDEDW--------PTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPF-GKLAPKSKADFAFLLH---  342 (542)
T ss_dssp             GGGEEEEESCTTTSCS--------CCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGG-SSCCCTTCCHHHHHHH---
T ss_pred             cCccceEecceecccc--------cccccccccEEEecCCcCCccccchhhhhhhhhhhh-hhcCCCchhhHHHHHH---
Confidence             468899999875410        00234689999999999864321 111000000000 0000001112347777   


Q ss_pred             hhcccccccccccc-CCcEEEEEecC--CCccccHHHHHHHHHHCCCcE
Q psy17793        214 FVSLFDWQGIPLLK-KDGILVYCTCS--LSVEENEAVIAWILHRHPEVE  259 (397)
Q Consensus       214 f~~~~~~~a~~lLk-pgG~lvysTCS--~~~eEnE~vV~~~L~~~~~~~  259 (397)
                              +.++|| +||++++.+-.  +.....+..+++.|-+...++
T Consensus       343 --------~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~~l~  383 (542)
T 3lkd_A          343 --------GYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEGAID  383 (542)
T ss_dssp             --------HHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHTTCEE
T ss_pred             --------HHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhCCcee
Confidence                    999999 99998776533  212222444544444433443

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.10  E-value=2.4e-10  Score=109.33  Aligned_cols=113  Identities=19%  Similarity=0.202  Sum_probs=84.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEEcccccccccchhhHHHhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL--QL--SSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~--g~--~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      .+.+|||+|||+|+.+..++.. .+..+|+++|+|+..++.+++++..+  ++  .+++++.+|+.....          
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~----------  143 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKH-PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA----------  143 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTC-TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH----------
T ss_pred             CCCEEEEECCchHHHHHHHHhC-CCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh----------
Confidence            4679999999999999888774 24579999999999999999998763  33  469999999987531          


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      ...++||+|++|+|.. .+  |.  ....              ..++++.           +.++|||||+++..+.+
T Consensus       144 ~~~~~fD~Ii~d~~~~-~~--~~--~~l~--------------~~~~~~~-----------~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          144 KSENQYDVIMVDSTEP-VG--PA--VNLF--------------TKGFYAG-----------IAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             TCCSCEEEEEESCSSC-CS--CC--CCCS--------------TTHHHHH-----------HHHHEEEEEEEEEECCC
T ss_pred             hCCCCeeEEEECCCCC-CC--cc--hhhh--------------HHHHHHH-----------HHHhcCCCcEEEEEcCC
Confidence            1246899999999841 11  10  0000              1345566           88899999999998655

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.10  E-value=8.2e-11  Score=108.54  Aligned_cols=131  Identities=18%  Similarity=0.090  Sum_probs=95.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      +.+|||+|||+|..+..++.   ...+|+++|+|+.+++.+++++...+. .++++..+|+..+.            ..+
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------~~~  131 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR------------PTE  131 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC------------CSS
T ss_pred             CCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC------------CCC
Confidence            35999999999999988765   467899999999999999999887543 46999999998763            335


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc--
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE--  242 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e--  242 (397)
                      +||+|++....          ....    ...       ..++|++           +.++|||||+++..+.+....  
T Consensus       132 ~fD~v~~~~~l----------~~~~----~~~-------~~~~l~~-----------~~~~LkpgG~l~~~~~~~~~~~~  179 (235)
T 3lcc_A          132 LFDLIFDYVFF----------CAIE----PEM-------RPAWAKS-----------MYELLKPDGELITLMYPITDHVG  179 (235)
T ss_dssp             CEEEEEEESST----------TTSC----GGG-------HHHHHHH-----------HHHHEEEEEEEEEEECCCSCCCS
T ss_pred             CeeEEEEChhh----------hcCC----HHH-------HHHHHHH-----------HHHHCCCCcEEEEEEecccccCC
Confidence            89999973321          0011    011       1456777           889999999999876544322  


Q ss_pred             -----ccHHHHHHHHHHCCCcEEEecC
Q psy17793        243 -----ENEAVIAWILHRHPEVELVQTL  264 (397)
Q Consensus       243 -----EnE~vV~~~L~~~~~~~l~~~~  264 (397)
                           -.++.+..++++. +|+.+.+.
T Consensus       180 ~~~~~~~~~~~~~~l~~~-Gf~~~~~~  205 (235)
T 3lcc_A          180 GPPYKVDVSTFEEVLVPI-GFKAVSVE  205 (235)
T ss_dssp             CSSCCCCHHHHHHHHGGG-TEEEEEEE
T ss_pred             CCCccCCHHHHHHHHHHc-CCeEEEEE
Confidence                 2456677777776 57776654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.09  E-value=4.8e-10  Score=104.15  Aligned_cols=107  Identities=19%  Similarity=0.166  Sum_probs=82.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ..++.+|||+|||+|..+..++..   +.+|+|+|+|+.+++.++++++..+. ++.+..+|+..+.            .
T Consensus        39 ~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~------------~  102 (252)
T 1wzn_A           39 KREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIA------------F  102 (252)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCC------------C
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcc------------c
Confidence            456789999999999999999884   46899999999999999999998886 6899999998753            2


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      .++||+|++...  .       .....    ..       ...++|++           +.++|||||.++..+
T Consensus       103 ~~~fD~v~~~~~--~-------~~~~~----~~-------~~~~~l~~-----------~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          103 KNEFDAVTMFFS--T-------IMYFD----EE-------DLRKLFSK-----------VAEALKPGGVFITDF  145 (252)
T ss_dssp             CSCEEEEEECSS--G-------GGGSC----HH-------HHHHHHHH-----------HHHHEEEEEEEEEEE
T ss_pred             CCCccEEEEcCC--c-------hhcCC----HH-------HHHHHHHH-----------HHHHcCCCeEEEEec
Confidence            357999997321  0       00011    11       12567777           899999999998764

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.08  E-value=6.3e-11  Score=115.92  Aligned_cols=114  Identities=13%  Similarity=0.204  Sum_probs=84.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh--C--CCcEEEEEcccccccccchhhHHHh
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL--Q--LSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~--g--~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      .++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++++..+  +  -.+++++.+|+.....         
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~---------  184 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE---------  184 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH---------
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHh---------
Confidence            456799999999999999888743 4579999999999999999998763  2  2569999999876521         


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                       ...++||+|++|++.. .+  |           ...+     .+.++++.           +.++|||||.++..+.+
T Consensus       185 -~~~~~fDvIi~d~~~p-~~--~-----------~~~l-----~~~~~l~~-----------~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          185 -NVTNTYDVIIVDSSDP-IG--P-----------AETL-----FNQNFYEK-----------IYNALKPNGYCVAQCES  232 (321)
T ss_dssp             -HCCSCEEEEEEECCCS-SS--G-----------GGGG-----SSHHHHHH-----------HHHHEEEEEEEEEEECC
T ss_pred             -hcCCCceEEEECCcCC-CC--c-----------chhh-----hHHHHHHH-----------HHHhcCCCcEEEEEcCC
Confidence             1346899999998621 00  0           0000     11456777           88999999999997654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.08  E-value=2.3e-10  Score=105.30  Aligned_cols=108  Identities=19%  Similarity=0.271  Sum_probs=81.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..+..++..    .+|+++|+|+.+++.+++++...+ .++++...|+....           + .
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~-----------~-~   94 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELE-----------L-P   94 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCC-----------C-S
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcC-----------C-C
Confidence            45789999999999999887764    689999999999999999999887 46899999987652           2 3


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      ++||+|++...+        +.+..+    ...       ..++|++           +.++|||||++++++.+
T Consensus        95 ~~fD~v~~~~~~--------~~~~~~----~~~-------~~~~l~~-----------~~~~L~pgG~l~~~~~~  139 (243)
T 3d2l_A           95 EPVDAITILCDS--------LNYLQT----EAD-------VKQTFDS-----------AARLLTDGGKLLFDVHS  139 (243)
T ss_dssp             SCEEEEEECTTG--------GGGCCS----HHH-------HHHHHHH-----------HHHHEEEEEEEEEEEEC
T ss_pred             CCcCEEEEeCCc--------hhhcCC----HHH-------HHHHHHH-----------HHHhcCCCeEEEEEcCC
Confidence            689999984310        000001    111       1566777           88999999999987544

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.08  E-value=7.4e-11  Score=113.26  Aligned_cols=115  Identities=13%  Similarity=0.193  Sum_probs=85.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEEcccccccccchhhHHH
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ----LSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g----~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      ..++.+|||+|||+|+.+..++.. .+..+|+++|+|+..++.+++++..++    -.+++++.+|+.....        
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~--------  146 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKY-KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE--------  146 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH--------
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHH--------
Confidence            345689999999999999988864 245799999999999999999987653    3579999999976531        


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                        ...++||+|++|++..- +  |           ...+     .+.++++.           +.++|||||+++..+++
T Consensus       147 --~~~~~fD~Ii~d~~~~~-~--~-----------~~~l-----~~~~~l~~-----------~~~~L~pgG~lv~~~~~  194 (283)
T 2i7c_A          147 --NVTNTYDVIIVDSSDPI-G--P-----------AETL-----FNQNFYEK-----------IYNALKPNGYCVAQCES  194 (283)
T ss_dssp             --HCCSCEEEEEEECCCTT-T--G-----------GGGG-----SSHHHHHH-----------HHHHEEEEEEEEEECCC
T ss_pred             --hCCCCceEEEEcCCCCC-C--c-----------chhh-----hHHHHHHH-----------HHHhcCCCcEEEEECCC
Confidence              12468999999986311 1  0           0000     11456666           88899999999998765

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.08  E-value=2.8e-10  Score=113.55  Aligned_cols=114  Identities=16%  Similarity=0.123  Sum_probs=88.1

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHH
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      .+...++.+|||+|||+|..+..++..  +..+|+|+|+| .+++.++++++.+|+.+ |+++.+|+..+.         
T Consensus        58 ~~~~~~~~~VLDlGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------  125 (376)
T 3r0q_C           58 NKHHFEGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS---------  125 (376)
T ss_dssp             TTTTTTTCEEEEESCTTTHHHHHHHHT--TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC---------
T ss_pred             ccccCCCCEEEEeccCcCHHHHHHHhc--CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC---------
Confidence            345678899999999999999998885  34599999999 99999999999999875 999999998763         


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                        +. ++||+|++++......       .      ...       ...++..           +.++|||||.++.+.++
T Consensus       126 --~~-~~~D~Iv~~~~~~~l~-------~------e~~-------~~~~l~~-----------~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          126 --LP-EKVDVIISEWMGYFLL-------R------ESM-------FDSVISA-----------RDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             --CS-SCEEEEEECCCBTTBT-------T------TCT-------HHHHHHH-----------HHHHEEEEEEEESSEEE
T ss_pred             --cC-CcceEEEEcChhhccc-------c------hHH-------HHHHHHH-----------HHhhCCCCeEEEEecCe
Confidence              22 7899999977311100       0      010       1445666           77899999999888776


Q ss_pred             C
Q psy17793        239 L  239 (397)
Q Consensus       239 ~  239 (397)
                      +
T Consensus       172 ~  172 (376)
T 3r0q_C          172 M  172 (376)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.08  E-value=1.5e-10  Score=107.91  Aligned_cols=105  Identities=19%  Similarity=0.162  Sum_probs=82.1

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      .+.++.+|||+|||+|..+..++..   ..+|+|+|+|+.+++.+++++ ..+..++.+..+|+..+.           +
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~-----------~  100 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIP-----------L  100 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCC-----------S
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCC-----------C
Confidence            5678899999999999999988874   479999999999999999988 445568999999997652           3


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      ..++||+|++.-.          . .+-    .    .    ..++|++           +.++|||||.++.+
T Consensus       101 ~~~~fD~v~~~~~----------l-~~~----~----~----~~~~l~~-----------~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          101 PDESVHGVIVVHL----------W-HLV----P----D----WPKVLAE-----------AIRVLKPGGALLEG  140 (263)
T ss_dssp             CTTCEEEEEEESC----------G-GGC----T----T----HHHHHHH-----------HHHHEEEEEEEEEE
T ss_pred             CCCCeeEEEECCc----------h-hhc----C----C----HHHHHHH-----------HHHHCCCCcEEEEE
Confidence            4578999998322          0 010    0    1    1456777           88999999999887

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.08  E-value=1.9e-10  Score=111.47  Aligned_cols=118  Identities=14%  Similarity=0.073  Sum_probs=78.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC------cEEEEEcccccccccchhhHHH
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS------SIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~------~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      ++.+|||+|||+|+.+..++..  +.+.|+|+|+|+.+++.++++....+..      ++++...|...-...   ..-.
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~---~~l~  122 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFV---SSVR  122 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHH---HHHH
T ss_pred             CCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhh---hhhh
Confidence            5789999999999877665552  4569999999999999999998887753      356777776321000   0000


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      ..+..++||+|++---         +.+.+.    ...       +..+|++           +.++|||||+++.+|..
T Consensus       123 ~~~~~~~FD~V~~~~~---------lhy~~~----~~~-------~~~~l~~-----------~~r~LkpGG~~i~~~~~  171 (302)
T 2vdw_A          123 EVFYFGKFNIIDWQFA---------IHYSFH----PRH-------YATVMNN-----------LSELTASGGKVLITTMD  171 (302)
T ss_dssp             TTCCSSCEEEEEEESC---------GGGTCS----TTT-------HHHHHHH-----------HHHHEEEEEEEEEEEEC
T ss_pred             ccccCCCeeEEEECch---------HHHhCC----HHH-------HHHHHHH-----------HHHHcCCCCEEEEEeCC
Confidence            1134578999986110         000011    011       1567888           99999999999998753

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.07  E-value=3.7e-10  Score=109.41  Aligned_cols=116  Identities=14%  Similarity=0.171  Sum_probs=83.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEEcccccccccchhhHHH
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL----QLSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~----g~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      ..++.+|||+|||+|+.+..++.. .+..+|+++|+|+..++.+++++..+    .-.+++++.+|+..+...       
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-------  164 (304)
T 3bwc_A           93 HPKPERVLIIGGGDGGVLREVLRH-GTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ-------  164 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHHTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS-------
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh-------
Confidence            356789999999999999988875 24579999999999999999988542    235699999998765310       


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                        ...++||+|++|++...          +.    ...+     .+.++++.           +.++|||||+++..+.+
T Consensus       165 --~~~~~fDvIi~d~~~~~----------~~----~~~l-----~~~~~l~~-----------~~~~LkpgG~lv~~~~~  212 (304)
T 3bwc_A          165 --TPDNTYDVVIIDTTDPA----------GP----ASKL-----FGEAFYKD-----------VLRILKPDGICCNQGES  212 (304)
T ss_dssp             --SCTTCEEEEEEECC----------------------------CCHHHHHH-----------HHHHEEEEEEEEEEECC
T ss_pred             --ccCCceeEEEECCCCcc----------cc----chhh-----hHHHHHHH-----------HHHhcCCCcEEEEecCC
Confidence              12468999999987210          00    0111     12456777           88999999999987544

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.07  E-value=3.1e-10  Score=104.32  Aligned_cols=106  Identities=20%  Similarity=0.223  Sum_probs=82.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      ++.+|||+|||+|..+..++..   ..+|+++|+|+.+++.+++++...+. ++.+...|+..+.           +. +
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----------~~-~  100 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLN-----------IN-R  100 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCC-----------CS-C
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCC-----------cc-C
Confidence            6789999999999999988875   46899999999999999999998886 7899999987652           23 6


Q ss_pred             CccEEEEcC-CCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        165 SFDRILLDA-PCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       165 ~fD~Il~Dp-PCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                      +||+|++.. .          .....  + ...       ..++|++           +.++|||||.+++++.
T Consensus       101 ~fD~v~~~~~~----------l~~~~--~-~~~-------~~~~l~~-----------~~~~L~pgG~l~~~~~  143 (246)
T 1y8c_A          101 KFDLITCCLDS----------TNYII--D-SDD-------LKKYFKA-----------VSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             CEEEEEECTTG----------GGGCC--S-HHH-------HHHHHHH-----------HHTTEEEEEEEEEEEE
T ss_pred             CceEEEEcCcc----------ccccC--C-HHH-------HHHHHHH-----------HHHhcCCCcEEEEEec
Confidence            899999843 1          11110  0 111       2567788           9999999999998643

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.07  E-value=1.8e-10  Score=105.99  Aligned_cols=117  Identities=13%  Similarity=0.079  Sum_probs=84.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ..++.+|||+|||+|..+..++..   +.+|+++|+|+.+++.++++     ..++++.++|+....          ++.
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~----------~~~  107 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGEL----------PAG  107 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSC----------CTT
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhcc----------CCc
Confidence            367889999999999999998885   46999999999999999887     457899999995432          134


Q ss_pred             -ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793        163 -KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV  241 (397)
Q Consensus       163 -~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~  241 (397)
                       .++||+|++.+.                  .           ..+|++           +.++|||||+++....    
T Consensus       108 ~~~~fD~v~~~~~------------------~-----------~~~l~~-----------~~~~LkpgG~l~~~~~----  143 (226)
T 3m33_A          108 LGAPFGLIVSRRG------------------P-----------TSVILR-----------LPELAAPDAHFLYVGP----  143 (226)
T ss_dssp             CCCCEEEEEEESC------------------C-----------SGGGGG-----------HHHHEEEEEEEEEEES----
T ss_pred             CCCCEEEEEeCCC------------------H-----------HHHHHH-----------HHHHcCCCcEEEEeCC----
Confidence             578999998521                  1           223344           7788999999993221    


Q ss_pred             cccHHHHHHHHHHCCCcEEEe
Q psy17793        242 EENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       242 eEnE~vV~~~L~~~~~~~l~~  262 (397)
                      ..+.+.+...+++. +++...
T Consensus       144 ~~~~~~~~~~l~~~-Gf~~~~  163 (226)
T 3m33_A          144 RLNVPEVPERLAAV-GWDIVA  163 (226)
T ss_dssp             SSCCTHHHHHHHHT-TCEEEE
T ss_pred             cCCHHHHHHHHHHC-CCeEEE
Confidence            22333556667766 455443

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.07  E-value=1e-10  Score=106.08  Aligned_cols=108  Identities=16%  Similarity=0.108  Sum_probs=80.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .+.++|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|+.++|+. ++++  .|....            ..
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~------------~~  112 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD------------VY  112 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH------------HT
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc------------CC
Confidence            446799999999999998887764 4559999999999999999999999998 5766  454322            24


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE-ecCCC
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC-TCSLS  240 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys-TCS~~  240 (397)
                      .+.||+|++                      .+.+.-+ +.++..+.+           ..+.|||||.+|-- |-|+.
T Consensus       113 ~~~~DvVLa----------------------~k~LHlL-~~~~~al~~-----------v~~~L~pggvfISfptksl~  157 (200)
T 3fzg_A          113 KGTYDVVFL----------------------LKMLPVL-KQQDVNILD-----------FLQLFHTQNFVISFPIKSLS  157 (200)
T ss_dssp             TSEEEEEEE----------------------ETCHHHH-HHTTCCHHH-----------HHHTCEEEEEEEEEECCCCC
T ss_pred             CCCcChhhH----------------------hhHHHhh-hhhHHHHHH-----------HHHHhCCCCEEEEeChHHhc
Confidence            578999997                      2334444 333455556           88999999987633 34443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.07  E-value=2.7e-10  Score=111.42  Aligned_cols=114  Identities=19%  Similarity=0.136  Sum_probs=86.4

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHh
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      +...++.+|||+|||+|..+..++..  +..+|+|+|++ .+++.++++++.+|+. +|+++.+|+..+.          
T Consensus        34 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------  100 (328)
T 1g6q_1           34 KDLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH----------  100 (328)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC----------
T ss_pred             HhhcCCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc----------
Confidence            33457889999999999999988874  45699999999 5899999999999986 4999999998752          


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                       ++.++||+|+++++.....       ...  .+           ..+|..           +.++|||||+++.+++++
T Consensus       101 -~~~~~~D~Ivs~~~~~~l~-------~~~--~~-----------~~~l~~-----------~~~~LkpgG~li~~~~~~  148 (328)
T 1g6q_1          101 -LPFPKVDIIISEWMGYFLL-------YES--MM-----------DTVLYA-----------RDHYLVEGGLIFPDKCSI  148 (328)
T ss_dssp             -CSSSCEEEEEECCCBTTBS-------TTC--CH-----------HHHHHH-----------HHHHEEEEEEEESCEEEE
T ss_pred             -CCCCcccEEEEeCchhhcc-------cHH--HH-----------HHHHHH-----------HHhhcCCCeEEEEeeceE
Confidence             2346899999987632210       000  01           345666           778999999998666654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.06  E-value=1.5e-10  Score=109.31  Aligned_cols=111  Identities=15%  Similarity=0.075  Sum_probs=80.0

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH-----------------hCCCcEEEEEcc
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKK-----------------LQLSSIQTHVYD  144 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~-----------------~g~~~v~~~~~D  144 (397)
                      .+.++.+|||+|||+|..+..+|..   +..|+|+|+|+.+++.++++...                 ....+|++.++|
T Consensus        65 ~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D  141 (252)
T 2gb4_A           65 KGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCS  141 (252)
T ss_dssp             TTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESC
T ss_pred             cCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECc
Confidence            3467889999999999999999984   45899999999999999765431                 012579999999


Q ss_pred             cccccccchhhHHHhhhc-ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q psy17793        145 STRINTSSQIDIERMKLQ-KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI  223 (397)
Q Consensus       145 ~~~~~~~~~~d~~~~~~~-~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~  223 (397)
                      +..+.           +. .++||+|+....          .....    ..       ....++++           +.
T Consensus       142 ~~~l~-----------~~~~~~FD~V~~~~~----------l~~l~----~~-------~~~~~l~~-----------~~  178 (252)
T 2gb4_A          142 IFDLP-----------RANIGKFDRIWDRGA----------LVAIN----PG-------DHDRYADI-----------IL  178 (252)
T ss_dssp             TTTGG-----------GGCCCCEEEEEESSS----------TTTSC----GG-------GHHHHHHH-----------HH
T ss_pred             cccCC-----------cccCCCEEEEEEhhh----------hhhCC----HH-------HHHHHHHH-----------HH
Confidence            98763           22 268999996321          00001    01       11456777           88


Q ss_pred             ccccCCcEEEEEecC
Q psy17793        224 PLLKKDGILVYCTCS  238 (397)
Q Consensus       224 ~lLkpgG~lvysTCS  238 (397)
                      ++|||||++++.|..
T Consensus       179 ~~LkpGG~l~l~~~~  193 (252)
T 2gb4_A          179 SLLRKEFQYLVAVLS  193 (252)
T ss_dssp             HTEEEEEEEEEEEEE
T ss_pred             HHcCCCeEEEEEEEe
Confidence            999999999876543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.06  E-value=4.3e-10  Score=115.83  Aligned_cols=112  Identities=15%  Similarity=0.078  Sum_probs=85.6

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHh
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      +...++.+|||+|||+|..+..+|..  +..+|+|+|+|+ +++.++++++++|+ ++|+++.+|+..+.          
T Consensus       154 l~~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~----------  220 (480)
T 3b3j_A          154 HTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS----------  220 (480)
T ss_dssp             GGGTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC----------
T ss_pred             hhhcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc----------
Confidence            44567889999999999999988873  456999999998 99999999999998 57999999998752          


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                        ..++||+|+++++                   -.... .... ...+..           +.++|||||.++.+.+++
T Consensus       221 --~~~~fD~Ivs~~~-------------------~~~~~-~e~~-~~~l~~-----------~~~~LkpgG~li~~~~~~  266 (480)
T 3b3j_A          221 --LPEQVDIIISEPM-------------------GYMLF-NERM-LESYLH-----------AKKYLKPSGNMFPTIGDV  266 (480)
T ss_dssp             --CSSCEEEEECCCC-------------------HHHHT-CHHH-HHHHHH-----------GGGGEEEEEEEESCEEEE
T ss_pred             --cCCCeEEEEEeCc-------------------hHhcC-cHHH-HHHHHH-----------HHHhcCCCCEEEEEecee
Confidence              2357999999876                   01110 0011 334556           889999999999765553

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.06  E-value=1.5e-10  Score=106.65  Aligned_cols=111  Identities=16%  Similarity=0.179  Sum_probs=84.2

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d  155 (397)
                      .+...+...++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.+++++..   .++++...|+....      
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~------  102 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLH------  102 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCC------
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhcc------
Confidence            4455666678899999999999999998885  334999999999999999877543   36899999987652      


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                           +..++||+|++...          .....         .    ...+|++           +.++|||||+++++
T Consensus       103 -----~~~~~fD~v~~~~~----------l~~~~---------~----~~~~l~~-----------~~~~L~pgG~l~~~  143 (243)
T 3bkw_A          103 -----LPQDSFDLAYSSLA----------LHYVE---------D----VARLFRT-----------VHQALSPGGHFVFS  143 (243)
T ss_dssp             -----CCTTCEEEEEEESC----------GGGCS---------C----HHHHHHH-----------HHHHEEEEEEEEEE
T ss_pred             -----CCCCCceEEEEecc----------ccccc---------h----HHHHHHH-----------HHHhcCcCcEEEEE
Confidence                 34568999998432          00111         1    1467777           88999999999998


Q ss_pred             e
Q psy17793        236 T  236 (397)
Q Consensus       236 T  236 (397)
                      +
T Consensus       144 ~  144 (243)
T 3bkw_A          144 T  144 (243)
T ss_dssp             E
T ss_pred             e
Confidence            6

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.05  E-value=2e-10  Score=109.32  Aligned_cols=126  Identities=10%  Similarity=0.057  Sum_probs=87.2

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC----CcEEEEEccccccccc
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL----SSIQTHVYDSTRINTS  151 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~----~~v~~~~~D~~~~~~~  151 (397)
                      ++...+...++.+|||+|||+|..+..++..   +.+|+|+|+|+.+++.+++++...+.    .++.+..+|+..+.. 
T Consensus        48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~-  123 (293)
T 3thr_A           48 WLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK-  123 (293)
T ss_dssp             HHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH-
T ss_pred             HHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc-
Confidence            3444555667889999999999999999885   45999999999999999998865543    357788888876520 


Q ss_pred             chhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcE
Q psy17793        152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI  231 (397)
Q Consensus       152 ~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~  231 (397)
                             ..+..++||+|++...+         .....  +.....    ....++|++           +.++|||||+
T Consensus       124 -------~~~~~~~fD~V~~~g~~---------l~~~~--~~~~~~----~~~~~~l~~-----------~~~~LkpgG~  170 (293)
T 3thr_A          124 -------DVPAGDGFDAVICLGNS---------FAHLP--DSKGDQ----SEHRLALKN-----------IASMVRPGGL  170 (293)
T ss_dssp             -------HSCCTTCEEEEEECTTC---------GGGSC--CSSSSS----HHHHHHHHH-----------HHHTEEEEEE
T ss_pred             -------ccccCCCeEEEEEcChH---------HhhcC--ccccCH----HHHHHHHHH-----------HHHHcCCCeE
Confidence                   00345789999973110         00111  000000    112667888           9999999999


Q ss_pred             EEEEecC
Q psy17793        232 LVYCTCS  238 (397)
Q Consensus       232 lvysTCS  238 (397)
                      ++.+++.
T Consensus       171 l~~~~~~  177 (293)
T 3thr_A          171 LVIDHRN  177 (293)
T ss_dssp             EEEEEEC
T ss_pred             EEEEeCC
Confidence            9998664

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.05  E-value=1.5e-10  Score=101.19  Aligned_cols=103  Identities=15%  Similarity=0.174  Sum_probs=79.1

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      .+.+.++.+|||+|||+|..+..++...   .+|+++|+++.+++.++++     ..++++...| ..            
T Consensus        12 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~~------------   70 (170)
T 3i9f_A           12 NIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK-----FDSVITLSDP-KE------------   70 (170)
T ss_dssp             HHHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH-----CTTSEEESSG-GG------------
T ss_pred             hcCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-CC------------
Confidence            3456788899999999999999888853   4999999999999999887     4578888888 22            


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                       +..++||+|++....          ....  +           ...+|++           +.++|||||++++++..
T Consensus        71 -~~~~~~D~v~~~~~l----------~~~~--~-----------~~~~l~~-----------~~~~L~pgG~l~~~~~~  114 (170)
T 3i9f_A           71 -IPDNSVDFILFANSF----------HDMD--D-----------KQHVISE-----------VKRILKDDGRVIIIDWR  114 (170)
T ss_dssp             -SCTTCEEEEEEESCS----------TTCS--C-----------HHHHHHH-----------HHHHEEEEEEEEEEEEC
T ss_pred             -CCCCceEEEEEccch----------hccc--C-----------HHHHHHH-----------HHHhcCCCCEEEEEEcC
Confidence             345789999974331          1111  1           1466777           88999999999998654

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.05  E-value=1.8e-09  Score=108.19  Aligned_cols=102  Identities=16%  Similarity=0.176  Sum_probs=78.5

Q ss_pred             cCCCcEEEechhH---HH---HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCC--------------------------
Q psy17793         62 LDSSMGILQNLPS---IL---AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMND--------------------------  109 (397)
Q Consensus        62 ~~~g~~~~Qd~~S---~l---~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~--------------------------  109 (397)
                      ++.|+...|..+.   .+   +.......++..|||.|||+|++++.+|....+                          
T Consensus       166 ~krgyr~~~~~Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~  245 (385)
T 3ldu_A          166 HKRGYREKANKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVR  245 (385)
T ss_dssp             TCCSCCCC--CCCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHH
T ss_pred             hhcccccCCCCCCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHH
Confidence            4566655553321   12   233456678899999999999999988876422                          


Q ss_pred             -----------CcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCC
Q psy17793        110 -----------TGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       110 -----------~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                                 ...|+|+|+|+.+++.+++|++.+|+. +|++.+.|+.++.            ....||+|++|||+
T Consensus       246 ~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~------------~~~~~D~Iv~NPPy  311 (385)
T 3ldu_A          246 KDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFK------------SEDEFGFIITNPPY  311 (385)
T ss_dssp             HHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCC------------CSCBSCEEEECCCC
T ss_pred             HHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcC------------cCCCCcEEEECCCC
Confidence                       157999999999999999999999996 5999999998763            23579999999994

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.05  E-value=2.6e-10  Score=108.10  Aligned_cols=102  Identities=13%  Similarity=0.110  Sum_probs=77.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      .+.+|||+|||+|..+..++..   ..+|+|+|+|+.+++.+++      ..+|.+..+|+..+.           +.++
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~-----------~~~~   98 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTG-----------LPPA   98 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC------CTTEEEEECCTTCCC-----------CCSS
T ss_pred             CCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh------cCCceeehhhhhhhc-----------ccCC
Confidence            4569999999999999988874   4689999999999887653      257999999998763           5678


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV  241 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~  241 (397)
                      +||+|++--           ..+|-  +.           .+.+.+           +.++|||||+|++.+.+...
T Consensus        99 sfD~v~~~~-----------~~h~~--~~-----------~~~~~e-----------~~rvLkpgG~l~~~~~~~~~  140 (257)
T 4hg2_A           99 SVDVAIAAQ-----------AMHWF--DL-----------DRFWAE-----------LRRVARPGAVFAAVTYGLTR  140 (257)
T ss_dssp             CEEEEEECS-----------CCTTC--CH-----------HHHHHH-----------HHHHEEEEEEEEEEEECCCB
T ss_pred             cccEEEEee-----------ehhHh--hH-----------HHHHHH-----------HHHHcCCCCEEEEEECCCCC
Confidence            999999711           11221  12           345667           88999999999998776543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.04  E-value=2.7e-10  Score=111.14  Aligned_cols=115  Identities=15%  Similarity=0.153  Sum_probs=83.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEEcccccccccchhhHHHh
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL--QL--SSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~--g~--~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      ..+.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++++..+  ++  .+++++.+|+.....         
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~---------  176 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK---------  176 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH---------
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHH---------
Confidence            345799999999999999888753 4579999999999999999998765  33  569999999876521         


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                       ...++||+|++|++.. .          .   ....+     ...++++.           +.++|||||+++..+.+.
T Consensus       177 -~~~~~fD~Ii~d~~~~-~----------~---~~~~l-----~t~~~l~~-----------~~~~LkpgG~lv~~~~~~  225 (314)
T 2b2c_A          177 -NHKNEFDVIITDSSDP-V----------G---PAESL-----FGQSYYEL-----------LRDALKEDGILSSQGESV  225 (314)
T ss_dssp             -HCTTCEEEEEECCC--------------------------------HHHH-----------HHHHEEEEEEEEEECCCT
T ss_pred             -hcCCCceEEEEcCCCC-C----------C---cchhh-----hHHHHHHH-----------HHhhcCCCeEEEEECCCc
Confidence             1346899999999621 0          0   00110     12566777           889999999999986553

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.04  E-value=9.3e-10  Score=110.26  Aligned_cols=85  Identities=9%  Similarity=0.120  Sum_probs=72.0

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCC-------------------------------------CcEEEEEeCCHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMND-------------------------------------TGTLIALDKSKP  121 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~-------------------------------------~~~V~avD~s~~  121 (397)
                      .+....++..|||.+||+|+..+.+|....+                                     ..+|+|+|+|+.
T Consensus       188 ~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~  267 (384)
T 3ldg_A          188 LLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGR  267 (384)
T ss_dssp             HHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHH
T ss_pred             HHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHH
Confidence            3445678899999999999999988876432                                     146999999999


Q ss_pred             HHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCC
Q psy17793        122 RVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       122 rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                      +++.+++|++.+|+.+ |++.+.|+..+.            ....||+|++|||+
T Consensus       268 al~~Ar~Na~~~gl~~~I~~~~~D~~~l~------------~~~~fD~Iv~NPPY  310 (384)
T 3ldg_A          268 MVEIARKNAREVGLEDVVKLKQMRLQDFK------------TNKINGVLISNPPY  310 (384)
T ss_dssp             HHHHHHHHHHHTTCTTTEEEEECCGGGCC------------CCCCSCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCceEEEECChHHCC------------ccCCcCEEEECCch
Confidence            9999999999999975 999999998863            23579999999996

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.04  E-value=2.4e-09  Score=108.78  Aligned_cols=114  Identities=14%  Similarity=0.114  Sum_probs=84.4

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHH-------HHHHHHhC--CCcEEEEEccccccc
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKL-------EETIKKLQ--LSSIQTHVYDSTRIN  149 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l-------~~n~~~~g--~~~v~~~~~D~~~~~  149 (397)
                      ..+.+.+|++|||+|||+|..+..+|... +..+|+|+|+++.+++.+       +++++++|  ..+|+++.+|.....
T Consensus       236 ~~l~l~~g~~VLDLGCGsG~la~~LA~~~-g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~  314 (433)
T 1u2z_A          236 QQCQLKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDN  314 (433)
T ss_dssp             HHTTCCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTC
T ss_pred             HhcCCCCCCEEEEeCCCcCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccc
Confidence            45677899999999999999999999876 346899999999999888       99999999  568999988654210


Q ss_pred             ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793        150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD  229 (397)
Q Consensus       150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg  229 (397)
                      ..       .....+.||+|+++..+.                 ...+       ...|.+           +.+.||||
T Consensus       315 ~~-------~~~~~~~FDvIvvn~~l~-----------------~~d~-------~~~L~e-----------l~r~LKpG  352 (433)
T 1u2z_A          315 NR-------VAELIPQCDVILVNNFLF-----------------DEDL-------NKKVEK-----------ILQTAKVG  352 (433)
T ss_dssp             HH-------HHHHGGGCSEEEECCTTC-----------------CHHH-------HHHHHH-----------HHTTCCTT
T ss_pred             cc-------cccccCCCCEEEEeCccc-----------------cccH-------HHHHHH-----------HHHhCCCC
Confidence            00       001135799999864310                 0111       234566           88999999


Q ss_pred             cEEEEE
Q psy17793        230 GILVYC  235 (397)
Q Consensus       230 G~lvys  235 (397)
                      |+|+.+
T Consensus       353 G~lVi~  358 (433)
T 1u2z_A          353 CKIISL  358 (433)
T ss_dssp             CEEEES
T ss_pred             eEEEEe
Confidence            999875

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.04  E-value=1.6e-10  Score=109.59  Aligned_cols=108  Identities=18%  Similarity=0.238  Sum_probs=83.0

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      +...+.+.++.+|||+|||+|..+..++.   ..++|+|+|+|+.+++.+++++     .++.+..+|+..+.       
T Consensus        49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~-------  113 (279)
T 3ccf_A           49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNFR-------  113 (279)
T ss_dssp             HHHHHCCCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCC-------
T ss_pred             HHHHhCCCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCC-------
Confidence            33556778899999999999999999988   4579999999999999998764     56788899987752       


Q ss_pred             HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                          + .++||+|++...          .....  +.           ..+|++           +.++|||||++++++
T Consensus       114 ----~-~~~fD~v~~~~~----------l~~~~--d~-----------~~~l~~-----------~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          114 ----V-DKPLDAVFSNAM----------LHWVK--EP-----------EAAIAS-----------IHQALKSGGRFVAEF  154 (279)
T ss_dssp             ----C-SSCEEEEEEESC----------GGGCS--CH-----------HHHHHH-----------HHHHEEEEEEEEEEE
T ss_pred             ----c-CCCcCEEEEcch----------hhhCc--CH-----------HHHHHH-----------HHHhcCCCcEEEEEe
Confidence                2 468999998432          00001  11           456777           889999999999886


Q ss_pred             cC
Q psy17793        237 CS  238 (397)
Q Consensus       237 CS  238 (397)
                      ..
T Consensus       155 ~~  156 (279)
T 3ccf_A          155 GG  156 (279)
T ss_dssp             EC
T ss_pred             cC
Confidence            54

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.03  E-value=3.6e-10  Score=106.71  Aligned_cols=141  Identities=16%  Similarity=0.047  Sum_probs=91.0

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC--C------------------------
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ--L------------------------  135 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g--~------------------------  135 (397)
                      ...+|.+|||+|||+|..+..++..  +..+|+|+|+|+.+++.++++++...  +                        
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~  129 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE  129 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence            4567889999999999887655542  33479999999999999998876532  1                        


Q ss_pred             ---CcEE-EEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHH-HHHHHHHHHHHHH
Q psy17793        136 ---SSIQ-THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKI-KSYANIQKKLLQA  210 (397)
Q Consensus       136 ---~~v~-~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~-~~l~~~Q~~lL~~  210 (397)
                         .+|+ +..+|+......       .+...++||+|++.-                  .+ ..+ ...... .++|++
T Consensus       130 ~~~~~i~~~~~~D~~~~~~~-------~~~~~~~fD~V~~~~------------------~l-~~i~~~~~~~-~~~l~~  182 (263)
T 2a14_A          130 KLRAAVKRVLKCDVHLGNPL-------APAVLPLADCVLTLL------------------AM-ECACCSLDAY-RAALCN  182 (263)
T ss_dssp             HHHHHEEEEEECCTTSSSTT-------TTCCCCCEEEEEEES------------------CH-HHHCSSHHHH-HHHHHH
T ss_pred             HHHhhhheEEeccccCCCCC-------CccccCCCCEeeehH------------------HH-HHhcCCHHHH-HHHHHH
Confidence               1244 778888763110       001245899999710                  11 111 111222 567888


Q ss_pred             HhhhhccccccccccccCCcEEEEEecCCCc------------cccHHHHHHHHHHCCCcEEEec
Q psy17793        211 VYRFVSLFDWQGIPLLKKDGILVYCTCSLSV------------EENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       211 ~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~------------eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                                 +.++|||||+|+.++..-..            .-.++.+...|++. +|+++.+
T Consensus       183 -----------i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~a-GF~i~~~  235 (263)
T 2a14_A          183 -----------LASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDA-GFDIEQL  235 (263)
T ss_dssp             -----------HHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHT-TEEEEEE
T ss_pred             -----------HHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHC-CCEEEEE
Confidence                       99999999999999642110            01455566677766 5766654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.03  E-value=9.8e-10  Score=106.97  Aligned_cols=117  Identities=12%  Similarity=0.112  Sum_probs=85.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh--C---CCcEEEEEcccccccccchhhHHH
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL--Q---LSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~--g---~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      ..+.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++++..+  +   -.+++++.+|+.....        
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~--------  146 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE--------  146 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH--------
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHH--------
Confidence            455799999999999999888753 4579999999999999999998762  2   3579999999976521        


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                        ...++||+|++|++... +.       ..   ....   +  ...++++.           +.++|||||+++..+.+
T Consensus       147 --~~~~~fD~Ii~d~~~~~-~~-------~~---~~~~---l--~~~~~l~~-----------~~~~LkpgG~lv~~~~~  197 (314)
T 1uir_A          147 --RTEERYDVVIIDLTDPV-GE-------DN---PARL---L--YTVEFYRL-----------VKAHLNPGGVMGMQTGM  197 (314)
T ss_dssp             --HCCCCEEEEEEECCCCB-ST-------TC---GGGG---G--SSHHHHHH-----------HHHTEEEEEEEEEEEEE
T ss_pred             --hcCCCccEEEECCCCcc-cc-------cC---cchh---c--cHHHHHHH-----------HHHhcCCCcEEEEEccC
Confidence              23468999999987311 00       00   0000   0  01456677           88999999999987654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.02  E-value=1.1e-09  Score=98.49  Aligned_cols=73  Identities=18%  Similarity=0.263  Sum_probs=62.5

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ...++.+|||+|||+|..+..++..  +..+|+|+|+|+.+++.++++++     +++++.+|+..+             
T Consensus        48 ~~~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~-------------  107 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEI-------------  107 (200)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGC-------------
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHC-------------
Confidence            4567889999999999999998885  44589999999999999999876     678999998764             


Q ss_pred             cccCccEEEEcCCC
Q psy17793        162 QKESFDRILLDAPC  175 (397)
Q Consensus       162 ~~~~fD~Il~DpPC  175 (397)
                      . ++||+|++|||.
T Consensus       108 ~-~~~D~v~~~~p~  120 (200)
T 1ne2_A          108 S-GKYDTWIMNPPF  120 (200)
T ss_dssp             C-CCEEEEEECCCC
T ss_pred             C-CCeeEEEECCCc
Confidence            2 579999999993

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.02  E-value=1.8e-09  Score=102.68  Aligned_cols=114  Identities=16%  Similarity=0.123  Sum_probs=78.3

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d  155 (397)
                      .+...+.+.++.+|||+|||+|..+..+|..   +.+|+|+|+|+.+++.++++++..   .+.....|.....      
T Consensus        36 ~il~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~---~v~~~~~~~~~~~------  103 (261)
T 3iv6_A           36 NDIFLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR---CVTIDLLDITAEI------  103 (261)
T ss_dssp             HHHHTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS---CCEEEECCTTSCC------
T ss_pred             HHHHhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc---cceeeeeeccccc------
Confidence            3445677889999999999999999999984   469999999999999999987654   2222222222100      


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                         .....++||+|+++..          ...+.    ...       .+..+.+           +.++| |||+|++|
T Consensus       104 ---~~~~~~~fD~Vv~~~~----------l~~~~----~~~-------~~~~l~~-----------l~~lL-PGG~l~lS  147 (261)
T 3iv6_A          104 ---PKELAGHFDFVLNDRL----------INRFT----TEE-------ARRACLG-----------MLSLV-GSGTVRAS  147 (261)
T ss_dssp             ---CGGGTTCCSEEEEESC----------GGGSC----HHH-------HHHHHHH-----------HHHHH-TTSEEEEE
T ss_pred             ---ccccCCCccEEEEhhh----------hHhCC----HHH-------HHHHHHH-----------HHHhC-cCcEEEEE
Confidence               0012468999999654          11111    121       1456666           77889 99999987


Q ss_pred             ec
Q psy17793        236 TC  237 (397)
Q Consensus       236 TC  237 (397)
                      ..
T Consensus       148 ~~  149 (261)
T 3iv6_A          148 VK  149 (261)
T ss_dssp             EE
T ss_pred             ec
Confidence            44

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.02  E-value=4e-10  Score=110.84  Aligned_cols=117  Identities=17%  Similarity=0.215  Sum_probs=86.6

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEEcccccccccchhhHHH
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL--QL--SSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~--g~--~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      ...+.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++++.++  |+  .+++++.+|+.....        
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~--------  188 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK--------  188 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH--------
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHH--------
Confidence            3456799999999999999888752 4579999999999999999998875  44  479999999876531        


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                       ....++||+|++|++-      |..   .     ...   +  ...++++.           +.++|||||.|+..+.+
T Consensus       189 -~~~~~~fDlIi~d~~~------p~~---~-----~~~---l--~~~~~l~~-----------~~~~LkpgG~lv~~~~~  237 (334)
T 1xj5_A          189 -NAAEGSYDAVIVDSSD------PIG---P-----AKE---L--FEKPFFQS-----------VARALRPGGVVCTQAES  237 (334)
T ss_dssp             -TSCTTCEEEEEECCCC------TTS---G-----GGG---G--GSHHHHHH-----------HHHHEEEEEEEEEECCC
T ss_pred             -hccCCCccEEEECCCC------ccC---c-----chh---h--hHHHHHHH-----------HHHhcCCCcEEEEecCC
Confidence             1234689999999861      100   0     010   0  11566777           88999999999997554


Q ss_pred             C
Q psy17793        239 L  239 (397)
Q Consensus       239 ~  239 (397)
                      .
T Consensus       238 ~  238 (334)
T 1xj5_A          238 L  238 (334)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.02  E-value=1.3e-10  Score=121.32  Aligned_cols=174  Identities=11%  Similarity=0.010  Sum_probs=112.1

Q ss_pred             CCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCC--------------CcEEEEEeCCHHHHHHHHH
Q psy17793         63 DSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMND--------------TGTLIALDKSKPRVTKLEE  128 (397)
Q Consensus        63 ~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~--------------~~~V~avD~s~~rl~~l~~  128 (397)
                      ..|.|+-...-+.+++.++.++++ +|||.|||+|++.+.++..+..              ...++|+|+++..++.++.
T Consensus       223 ~~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~  301 (544)
T 3khk_A          223 QGGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAM  301 (544)
T ss_dssp             CSTTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHH
T ss_pred             cCCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHH
Confidence            457888888888888999998877 9999999999999887765421              4589999999999999999


Q ss_pred             HHHHhCCCc-EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcc-cc--cccCccchHH---HHHHHH
Q psy17793        129 TIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPM-FY--NANSFLNLDK---KIKSYA  201 (397)
Q Consensus       129 n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~-~~--~~~s~~~~~~---~~~~l~  201 (397)
                      |+...|+.. +.+.++|.....          .+...+||+|++|||.+......+ ..  .++.......   .+..-.
T Consensus       302 Nl~l~gi~~~i~i~~gDtL~~~----------~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~  371 (544)
T 3khk_A          302 NMVIRGIDFNFGKKNADSFLDD----------QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTG  371 (544)
T ss_dssp             HHHHTTCCCBCCSSSCCTTTSC----------SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTT
T ss_pred             HHHHhCCCcccceeccchhcCc----------ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCc
Confidence            999998853 444677765432          123468999999999987431111 00  0000000000   000000


Q ss_pred             HHHHHHHHHHhhhhccccccccccccCCcEEEEEecC--CCcc-ccHHHHHHHHHHCCCc
Q psy17793        202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS--LSVE-ENEAVIAWILHRHPEV  258 (397)
Q Consensus       202 ~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS--~~~e-EnE~vV~~~L~~~~~~  258 (397)
                      ..+..++.+           ++++||+||++++.+-.  +... -.+..+++.|-+...+
T Consensus       372 ~~~~~Fl~~-----------~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~l  420 (544)
T 3khk_A          372 NANFAWMLH-----------MLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQDLV  420 (544)
T ss_dssp             CTHHHHHHH-----------HHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTCE
T ss_pred             chhHHHHHH-----------HHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhCCcH
Confidence            111346777           99999999998777532  2222 2444555554444333

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.01  E-value=2.1e-09  Score=102.76  Aligned_cols=137  Identities=17%  Similarity=0.142  Sum_probs=84.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeC-CHHHHHHHHHHH-----HHhCCC-----cEEEEEccccccccc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDK-SKPRVTKLEETI-----KKLQLS-----SIQTHVYDSTRINTS  151 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~-s~~rl~~l~~n~-----~~~g~~-----~v~~~~~D~~~~~~~  151 (397)
                      ..++.+|||+|||+|..+..++..  +.++|+|+|+ |+.+++.+++|+     +.+|+.     ++++...|.......
T Consensus        77 ~~~~~~vLDlG~G~G~~~~~~a~~--~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~  154 (281)
T 3bzb_A           77 LIAGKTVCELGAGAGLVSIVAFLA--GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDS  154 (281)
T ss_dssp             GTTTCEEEETTCTTSHHHHHHHHT--TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHH
T ss_pred             hcCCCeEEEecccccHHHHHHHHc--CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHH
Confidence            457889999999999999988774  3459999999 899999999999     666664     677776665432110


Q ss_pred             chhhHHHhhhcccCccEEEE-cCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc---
Q psy17793        152 SQIDIERMKLQKESFDRILL-DAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK---  227 (397)
Q Consensus       152 ~~~d~~~~~~~~~~fD~Il~-DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk---  227 (397)
                          . ...+..++||+|++ |+.+.           .      ..       ...+++.           +.++||   
T Consensus       155 ----~-~~~~~~~~fD~Ii~~dvl~~-----------~------~~-------~~~ll~~-----------l~~~Lk~~~  194 (281)
T 3bzb_A          155 ----L-QRCTGLQRFQVVLLADLLSF-----------H------QA-------HDALLRS-----------VKMLLALPA  194 (281)
T ss_dssp             ----H-HHHHSCSSBSEEEEESCCSC-----------G------GG-------HHHHHHH-----------HHHHBCCTT
T ss_pred             ----H-HhhccCCCCCEEEEeCcccC-----------h------HH-------HHHHHHH-----------HHHHhcccC
Confidence                0 00012468999987 65421           0      11       1455666           778899   


Q ss_pred             C--CcEEEEEecCCCc---cccHHHHHHHHHHCCC-cEEEec
Q psy17793        228 K--DGILVYCTCSLSV---EENEAVIAWILHRHPE-VELVQT  263 (397)
Q Consensus       228 p--gG~lvysTCS~~~---eEnE~vV~~~L~~~~~-~~l~~~  263 (397)
                      |  ||+++++.+...+   +..++.. ..+++. + +++..+
T Consensus       195 p~~gG~l~v~~~~~~~~~~~~~~~~~-~~l~~~-G~f~v~~~  234 (281)
T 3bzb_A          195 NDPTAVALVTFTHHRPHLAERDLAFF-RLVNAD-GALIAEPW  234 (281)
T ss_dssp             TCTTCEEEEEECC--------CTHHH-HHHHHS-TTEEEEEE
T ss_pred             CCCCCEEEEEEEeeecccchhHHHHH-HHHHhc-CCEEEEEe
Confidence            9  9987665333222   2223333 355665 5 776655

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.01  E-value=1.6e-09  Score=101.57  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=77.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..+..++..   ..+|+++|+|+.+++.+++++.     +++++.+|+..+.           + .
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~-----------~-~  108 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFS-----------L-G  108 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCC-----------C-S
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCC-----------c-c
Confidence            45689999999999999988774   4589999999999999988743     6889999998763           2 5


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      ++||+|++...         ......  + ...       ..++|++           +.++|||||.++.++
T Consensus       109 ~~fD~v~~~~~---------~l~~~~--~-~~~-------~~~~l~~-----------~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          109 RRFSAVTCMFS---------SIGHLA--G-QAE-------LDAALER-----------FAAHVLPDGVVVVEP  151 (263)
T ss_dssp             CCEEEEEECTT---------GGGGSC--H-HHH-------HHHHHHH-----------HHHTEEEEEEEEECC
T ss_pred             CCcCEEEEcCc---------hhhhcC--C-HHH-------HHHHHHH-----------HHHhcCCCcEEEEEe
Confidence            78999998431         000010  0 011       2567778           899999999999864

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.01  E-value=8.1e-10  Score=106.63  Aligned_cols=122  Identities=16%  Similarity=0.123  Sum_probs=81.6

Q ss_pred             cCCCCCCeEEEEcC------CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE-EEcccccccccch
Q psy17793         81 LDVQPGQKVLDMCA------APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT-HVYDSTRINTSSQ  153 (397)
Q Consensus        81 L~~~~g~~VLDlca------gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~-~~~D~~~~~~~~~  153 (397)
                      +.+++|++|||+||      |||+  ..++.+++..++|+|+|+++.             +.++++ +++|+....    
T Consensus        59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~----  119 (290)
T 2xyq_A           59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVH----  119 (290)
T ss_dssp             CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCC----
T ss_pred             cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCC----
Confidence            46788999999999      6687  556677665789999999998             246778 999987652    


Q ss_pred             hhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793        154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV  233 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv  233 (397)
                             + .++||+|++|+++...|....  ....      .    ..+..++|+.           +.++|||||+++
T Consensus       120 -------~-~~~fD~Vvsn~~~~~~g~~~~--d~~~------~----~~l~~~~l~~-----------a~r~LkpGG~~v  168 (290)
T 2xyq_A          120 -------T-ANKWDLIISDMYDPRTKHVTK--ENDS------K----EGFFTYLCGF-----------IKQKLALGGSIA  168 (290)
T ss_dssp             -------C-SSCEEEEEECCCCCC---CCS--CCCC------C----CTHHHHHHHH-----------HHHHEEEEEEEE
T ss_pred             -------c-cCcccEEEEcCCccccccccc--cccc------h----HHHHHHHHHH-----------HHHhcCCCcEEE
Confidence                   1 257999999987665553210  0001      0    0112466777           999999999999


Q ss_pred             EEecCCCccccHHHHHHHHHHC
Q psy17793        234 YCTCSLSVEENEAVIAWILHRH  255 (397)
Q Consensus       234 ysTCS~~~eEnE~vV~~~L~~~  255 (397)
                      ..+-  .....+ .+.+.++++
T Consensus       169 ~~~~--~~~~~~-~l~~~l~~~  187 (290)
T 2xyq_A          169 VKIT--EHSWNA-DLYKLMGHF  187 (290)
T ss_dssp             EEEC--SSSCCH-HHHHHHTTE
T ss_pred             EEEe--ccCCHH-HHHHHHHHc
Confidence            8642  233334 444566654

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.01  E-value=6e-10  Score=105.70  Aligned_cols=90  Identities=18%  Similarity=0.136  Sum_probs=72.9

Q ss_pred             HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCH-------HHHHHHHHHHHHhCCCc-EEEEEcccc
Q psy17793         75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK-------PRVTKLEETIKKLQLSS-IQTHVYDST  146 (397)
Q Consensus        75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~-------~rl~~l~~n~~~~g~~~-v~~~~~D~~  146 (397)
                      .++..++.+.++++|||+|||+|..+..+|..   +++|+++|+|+       .+++.+++|++.+++.+ |+++++|+.
T Consensus        73 ~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~  149 (258)
T 2r6z_A           73 ELIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAA  149 (258)
T ss_dssp             CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHH
T ss_pred             HHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHH
Confidence            34445556677889999999999999999984   46899999999       99999999999988865 999999997


Q ss_pred             cccccchhhHHHhhhcc--cCccEEEEcCCCC
Q psy17793        147 RINTSSQIDIERMKLQK--ESFDRILLDAPCS  176 (397)
Q Consensus       147 ~~~~~~~~d~~~~~~~~--~~fD~Il~DpPCS  176 (397)
                      .+..         .+..  ++||+|++|||..
T Consensus       150 ~~l~---------~~~~~~~~fD~V~~dP~~~  172 (258)
T 2r6z_A          150 EQMP---------ALVKTQGKPDIVYLDPMYP  172 (258)
T ss_dssp             HHHH---------HHHHHHCCCSEEEECCCC-
T ss_pred             HHHH---------hhhccCCCccEEEECCCCC
Confidence            6531         1222  5899999999853

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.01  E-value=3.2e-09  Score=106.61  Aligned_cols=85  Identities=12%  Similarity=0.179  Sum_probs=72.0

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCC-------------------------------------CcEEEEEeCCHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMND-------------------------------------TGTLIALDKSKP  121 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~-------------------------------------~~~V~avD~s~~  121 (397)
                      ......++..|||.+||+|..++.+|....+                                     ..+|+|+|+|+.
T Consensus       195 ~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~  274 (393)
T 3k0b_A          195 LLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDAR  274 (393)
T ss_dssp             HHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHH
T ss_pred             HHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHH
Confidence            4556678899999999999999988876432                                     146999999999


Q ss_pred             HHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCC
Q psy17793        122 RVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       122 rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                      +++.+++|++.+|+.+ |++.+.|+..+.            ...+||+|++|||+
T Consensus       275 al~~Ar~Na~~~gl~~~I~~~~~D~~~~~------------~~~~fD~Iv~NPPY  317 (393)
T 3k0b_A          275 LIEIAKQNAVEAGLGDLITFRQLQVADFQ------------TEDEYGVVVANPPY  317 (393)
T ss_dssp             HHHHHHHHHHHTTCTTCSEEEECCGGGCC------------CCCCSCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCceEEEECChHhCC------------CCCCCCEEEECCCC
Confidence            9999999999999975 999999998763            23579999999995

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.00  E-value=7e-10  Score=111.82  Aligned_cols=83  Identities=14%  Similarity=0.131  Sum_probs=69.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh--CCCcEEEEEcccccccccchhhHHHhhh
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL--QLSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~--g~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      .+|.+|||+|||+|..+..+|..   ..+|+++|+|+.+++.+++|++.+  |+++++++++|+.....         ..
T Consensus        92 ~~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~---------~~  159 (410)
T 3ll7_A           92 REGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLP---------LI  159 (410)
T ss_dssp             CTTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHH---------HH
T ss_pred             CCCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhh---------hc
Confidence            35899999999999999988874   479999999999999999999999  99889999999987531         11


Q ss_pred             cccCccEEEEcCCCCCC
Q psy17793        162 QKESFDRILLDAPCSGF  178 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~  178 (397)
                      ...+||+|++|||..+.
T Consensus       160 ~~~~fDvV~lDPPrr~~  176 (410)
T 3ll7_A          160 KTFHPDYIYVDPARRSG  176 (410)
T ss_dssp             HHHCCSEEEECCEEC--
T ss_pred             cCCCceEEEECCCCcCC
Confidence            23579999999998774

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.99  E-value=1e-09  Score=107.07  Aligned_cols=136  Identities=12%  Similarity=0.086  Sum_probs=97.2

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF  166 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f  166 (397)
                      .+|||+|||.|+.+..+++.. +..+|+++|+|+..++.+++++....-.+++++.+|+..+...         +..++|
T Consensus        91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~---------~~~~~f  160 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAES---------FTPASR  160 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHT---------CCTTCE
T ss_pred             CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhh---------ccCCCC
Confidence            399999999999999999865 4569999999999999999987654445799999999876421         234689


Q ss_pred             cEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc-cccH
Q psy17793        167 DRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV-EENE  245 (397)
Q Consensus       167 D~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~-eEnE  245 (397)
                      |+|++|..... +. |            ..+     ...++++.           +.++|||||+++..+.+... +...
T Consensus       161 DvIi~D~~~~~-~~-~------------~~L-----~t~efl~~-----------~~r~LkpgGvlv~~~~~~~~~~~~~  210 (317)
T 3gjy_A          161 DVIIRDVFAGA-IT-P------------QNF-----TTVEFFEH-----------CHRGLAPGGLYVANCGDHSDLRGAK  210 (317)
T ss_dssp             EEEEECCSTTS-CC-C------------GGG-----SBHHHHHH-----------HHHHEEEEEEEEEEEEECTTCHHHH
T ss_pred             CEEEECCCCcc-cc-c------------hhh-----hHHHHHHH-----------HHHhcCCCcEEEEEecCCcchHHHH
Confidence            99999975221 10 0            000     01456666           88999999999988765322 1224


Q ss_pred             HHHHHHHHHCCCcEEEe
Q psy17793        246 AVIAWILHRHPEVELVQ  262 (397)
Q Consensus       246 ~vV~~~L~~~~~~~l~~  262 (397)
                      .+++.+-+.++.+.++.
T Consensus       211 ~~~~tL~~vF~~v~~~~  227 (317)
T 3gjy_A          211 SELAGMMEVFEHVAVIA  227 (317)
T ss_dssp             HHHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHCCceEEEE
Confidence            56666667787666654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.99  E-value=6.1e-10  Score=103.09  Aligned_cols=104  Identities=14%  Similarity=0.116  Sum_probs=76.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .+++.+|||+|||+|..+..++..   +.+|+++|+|+.+++.++++        +.+...|+....         .++.
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~---------~~~~   98 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYL---------KSLP   98 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHH---------HTSC
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHh---------hhcC
Confidence            467889999999999999988885   45799999999999998876        577778776542         1245


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      .++||+|++.--          .....    ...+       ..+|++           +.++|||||+++.++..
T Consensus        99 ~~~fD~i~~~~~----------l~~~~----~~~~-------~~~l~~-----------~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A           99 DKYLDGVMISHF----------VEHLD----PERL-------FELLSL-----------CYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             TTCBSEEEEESC----------GGGSC----GGGH-------HHHHHH-----------HHHHBCTTCCEEEEEEC
T ss_pred             CCCeeEEEECCc----------hhhCC----cHHH-------HHHHHH-----------HHHHcCCCcEEEEEeCC
Confidence            678999997211          11111    0111       556777           88999999999998754

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.99  E-value=5.5e-10  Score=104.14  Aligned_cols=142  Identities=18%  Similarity=0.071  Sum_probs=94.2

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC---------------------------
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL---------------------------  135 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~---------------------------  135 (397)
                      ..++.+|||+|||+|..+..++..  ...+|+++|+|+.+++.++++++..+.                           
T Consensus        54 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (265)
T 2i62_A           54 AVKGELLIDIGSGPTIYQLLSACE--SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK  131 (265)
T ss_dssp             SCCEEEEEEESCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred             ccCCCEEEEECCCccHHHHHHhhc--ccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence            356789999999999999877764  224899999999999999988865431                           


Q ss_pred             --CcE-EEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHh
Q psy17793        136 --SSI-QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVY  212 (397)
Q Consensus       136 --~~v-~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~  212 (397)
                        .++ .+..+|+......       +....++||+|++.--                  + ..+.........+|++  
T Consensus       132 l~~~v~~~~~~d~~~~~~~-------~~~~~~~fD~v~~~~~------------------l-~~~~~~~~~~~~~l~~--  183 (265)
T 2i62_A          132 LRRAIKQVLKCDVTQSQPL-------GGVSLPPADCLLSTLC------------------L-DAACPDLPAYRTALRN--  183 (265)
T ss_dssp             HHHHEEEEEECCTTSSSTT-------TTCCCCCEEEEEEESC------------------H-HHHCSSHHHHHHHHHH--
T ss_pred             hhhhheeEEEeeeccCCCC-------CccccCCccEEEEhhh------------------h-hhhcCChHHHHHHHHH--
Confidence              127 8889998765210       0112268999997211                  1 1111011122677888  


Q ss_pred             hhhccccccccccccCCcEEEEEecCC------------CccccHHHHHHHHHHCCCcEEEecC
Q psy17793        213 RFVSLFDWQGIPLLKKDGILVYCTCSL------------SVEENEAVIAWILHRHPEVELVQTL  264 (397)
Q Consensus       213 ~f~~~~~~~a~~lLkpgG~lvysTCS~------------~~eEnE~vV~~~L~~~~~~~l~~~~  264 (397)
                               +.++|||||+|++++..-            ...-+++.+..++++. +++++.+.
T Consensus       184 ---------~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~~~~~~  237 (265)
T 2i62_A          184 ---------LGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEA-GYTIEQFE  237 (265)
T ss_dssp             ---------HHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHT-TCEEEEEE
T ss_pred             ---------HHhhCCCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHC-CCEEEEEE
Confidence                     999999999999886321            1112455666777776 57666543

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.99  E-value=2.3e-09  Score=102.49  Aligned_cols=88  Identities=22%  Similarity=0.230  Sum_probs=71.4

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      +...|++++|..+||+++|.|+.|..+++.   +++|+|+|.|+.+++.+++ ++.   .+++++.+|+.++...     
T Consensus        14 ~le~L~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~-----   81 (285)
T 1wg8_A           14 ALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRH-----   81 (285)
T ss_dssp             HHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHH-----
T ss_pred             HHHhhCCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHH-----
Confidence            345677899999999999999999999996   5799999999999999988 644   5799999999876311     


Q ss_pred             HHhhhcccCccEEEEcCCCCC
Q psy17793        157 ERMKLQKESFDRILLDAPCSG  177 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg  177 (397)
                       ......++||.|++|..+|+
T Consensus        82 -L~~~g~~~vDgIL~DLGvSS  101 (285)
T 1wg8_A           82 -LAALGVERVDGILADLGVSS  101 (285)
T ss_dssp             -HHHTTCSCEEEEEEECSCCH
T ss_pred             -HHHcCCCCcCEEEeCCcccc
Confidence             01112257999999999988

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.99  E-value=9.8e-09  Score=101.26  Aligned_cols=112  Identities=19%  Similarity=0.141  Sum_probs=87.4

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ..++..++.+|||+|||+|..+..++... +..+++++|+ +.+++.+++++.+.|+. +|++..+|+...         
T Consensus       176 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------  244 (374)
T 1qzz_A          176 DAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP---------  244 (374)
T ss_dssp             HTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---------
T ss_pred             HhCCCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc---------
Confidence            34556778899999999999999999875 4579999999 99999999999999986 699999998653         


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                         ++ ..||+|++.-.          ...+.    ...       ..++|++           +.++|||||++++...
T Consensus       245 ---~~-~~~D~v~~~~v----------l~~~~----~~~-------~~~~l~~-----------~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          245 ---LP-VTADVVLLSFV----------LLNWS----DED-------ALTILRG-----------CVRALEPGGRLLVLDR  288 (374)
T ss_dssp             ---CS-CCEEEEEEESC----------GGGSC----HHH-------HHHHHHH-----------HHHHEEEEEEEEEEEC
T ss_pred             ---CC-CCCCEEEEecc----------ccCCC----HHH-------HHHHHHH-----------HHHhcCCCcEEEEEec
Confidence               12 24999998322          22222    111       1467888           8999999999988765

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.98  E-value=2.3e-10  Score=109.64  Aligned_cols=108  Identities=14%  Similarity=0.036  Sum_probs=71.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH---HHhCCCcEEEE--EcccccccccchhhHH
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETI---KKLQLSSIQTH--VYDSTRINTSSQIDIE  157 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~---~~~g~~~v~~~--~~D~~~~~~~~~~d~~  157 (397)
                      +++|.+|||+|||||+++..++..    ++|+|+|+++ ++..++++.   +.++ .++.++  .+|+..+         
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l---------  144 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFG-WNLITFKSKVDVTKM---------  144 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTT-GGGEEEECSCCGGGC---------
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcC-CCeEEEeccCcHhhC---------
Confidence            568899999999999999988874    6899999998 432222110   0011 167888  8888765         


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc--EEEEE
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG--ILVYC  235 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG--~lvys  235 (397)
                          +.++||+|++|.. ..++.              ........  .++|..           +.++|||||  .++..
T Consensus       145 ----~~~~fD~Vvsd~~-~~~~~--------------~~~d~~~~--l~~L~~-----------~~r~LkpGG~~~~v~~  192 (276)
T 2wa2_A          145 ----EPFQADTVLCDIG-ESNPT--------------AAVEASRT--LTVLNV-----------ISRWLEYNQGCGFCVK  192 (276)
T ss_dssp             ----CCCCCSEEEECCC-CCCSC--------------HHHHHHHH--HHHHHH-----------HHHHHHHSTTCEEEEE
T ss_pred             ----CCCCcCEEEECCC-cCCCc--------------hhhhHHHH--HHHHHH-----------HHHHhccCCCcEEEEE
Confidence                3468999999875 22211              11111111  126677           889999999  98886


Q ss_pred             ec
Q psy17793        236 TC  237 (397)
Q Consensus       236 TC  237 (397)
                      +.
T Consensus       193 ~~  194 (276)
T 2wa2_A          193 VL  194 (276)
T ss_dssp             ES
T ss_pred             eC
Confidence            43

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.98  E-value=2.2e-10  Score=107.75  Aligned_cols=109  Identities=17%  Similarity=0.128  Sum_probs=82.5

Q ss_pred             HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh
Q psy17793         75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI  154 (397)
Q Consensus        75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~  154 (397)
                      ..+...+...++.+|||+|||+|..+..++.   ...+|+|+|+|+.+++.++++.      ++++...|+..+.     
T Consensus        24 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~-----   89 (261)
T 3ege_A           24 NAIINLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLA-----   89 (261)
T ss_dssp             HHHHHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSCC-----
T ss_pred             HHHHHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhCC-----
Confidence            3444556677899999999999999999887   4579999999999988776543      7899999997753     


Q ss_pred             hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793        155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY  234 (397)
Q Consensus       155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy  234 (397)
                            +..++||+|++.-.          .....            . ..++|++           +.++|| ||.+++
T Consensus        90 ------~~~~~fD~v~~~~~----------l~~~~------------~-~~~~l~~-----------~~~~Lk-gG~~~~  128 (261)
T 3ege_A           90 ------LPDKSVDGVISILA----------IHHFS------------H-LEKSFQE-----------MQRIIR-DGTIVL  128 (261)
T ss_dssp             ------SCTTCBSEEEEESC----------GGGCS------------S-HHHHHHH-----------HHHHBC-SSCEEE
T ss_pred             ------CCCCCEeEEEEcch----------Hhhcc------------C-HHHHHHH-----------HHHHhC-CcEEEE
Confidence                  45578999998332          11111            1 1567777           899999 998888


Q ss_pred             EecC
Q psy17793        235 CTCS  238 (397)
Q Consensus       235 sTCS  238 (397)
                      .++.
T Consensus       129 ~~~~  132 (261)
T 3ege_A          129 LTFD  132 (261)
T ss_dssp             EEEC
T ss_pred             EEcC
Confidence            8765

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.97  E-value=8.8e-09  Score=99.84  Aligned_cols=115  Identities=16%  Similarity=0.157  Sum_probs=87.9

Q ss_pred             ccCC--CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhH
Q psy17793         80 YLDV--QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        80 ~L~~--~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~  156 (397)
                      .++.  .++.+|||+|||+|..+..++... +..+++++|++ ..++.+++++.+.++. ++++..+|+....       
T Consensus       158 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------  228 (335)
T 2r3s_A          158 LVNENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD-------  228 (335)
T ss_dssp             HHTC--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC-------
T ss_pred             hcccccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC-------
Confidence            3455  678899999999999999999875 45799999999 9999999999999986 4999999987642       


Q ss_pred             HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                          +. ..||+|++.-          ....++    ...       ..++|++           +.++|||||+++...
T Consensus       229 ----~~-~~~D~v~~~~----------~l~~~~----~~~-------~~~~l~~-----------~~~~L~pgG~l~i~e  271 (335)
T 2r3s_A          229 ----YG-NDYDLVLLPN----------FLHHFD----VAT-------CEQLLRK-----------IKTALAVEGKVIVFD  271 (335)
T ss_dssp             ----CC-SCEEEEEEES----------CGGGSC----HHH-------HHHHHHH-----------HHHHEEEEEEEEEEE
T ss_pred             ----CC-CCCcEEEEcc----------hhccCC----HHH-------HHHHHHH-----------HHHhCCCCcEEEEEe
Confidence                22 3499999821          122222    121       2567888           899999999988876


Q ss_pred             cCCC
Q psy17793        237 CSLS  240 (397)
Q Consensus       237 CS~~  240 (397)
                      ....
T Consensus       272 ~~~~  275 (335)
T 2r3s_A          272 FIPN  275 (335)
T ss_dssp             CCCC
T ss_pred             ecCC
Confidence            5443

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.97  E-value=9.7e-10  Score=99.62  Aligned_cols=107  Identities=19%  Similarity=0.172  Sum_probs=77.1

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      .+...++.+|||+|||+|..+..++..   +.+|+|+|+|+.+++.++++      .++.+...|+..+...       +
T Consensus        47 ~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~-------~  110 (227)
T 3e8s_A           47 AILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEA-------K  110 (227)
T ss_dssp             HHHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTT-------C
T ss_pred             HhhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhccc-------c
Confidence            334456789999999999999988875   46899999999999999877      3466777777654210       1


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                      .....+||+|++.....           ..  +.           ..+|++           +.++|||||++++++-
T Consensus       111 ~~~~~~fD~v~~~~~l~-----------~~--~~-----------~~~l~~-----------~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          111 VPVGKDYDLICANFALL-----------HQ--DI-----------IELLSA-----------MRTLLVPGGALVIQTL  153 (227)
T ss_dssp             SCCCCCEEEEEEESCCC-----------SS--CC-----------HHHHHH-----------HHHTEEEEEEEEEEEC
T ss_pred             cccCCCccEEEECchhh-----------hh--hH-----------HHHHHH-----------HHHHhCCCeEEEEEec
Confidence            12334599999854310           01  11           456777           8899999999999864

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.97  E-value=2.5e-10  Score=108.74  Aligned_cols=127  Identities=14%  Similarity=0.011  Sum_probs=79.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH---HHhCCCcEEEE--EcccccccccchhhHH
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETI---KKLQLSSIQTH--VYDSTRINTSSQIDIE  157 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~---~~~g~~~v~~~--~~D~~~~~~~~~~d~~  157 (397)
                      +++|.+|||+|||||+++..++..    ++|+|+|+++ ++..++++.   +.++ .++.++  .+|++.+         
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l---------  136 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYG-WNIVKFKSRVDIHTL---------  136 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTT-GGGEEEECSCCTTTS---------
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccC-CCeEEEecccCHhHC---------
Confidence            578999999999999999888874    6899999998 322221110   0111 167888  8888765         


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc--EEEEE
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG--ILVYC  235 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG--~lvys  235 (397)
                          ..++||+|++|.. ..+|.              ..+.....  ..+|..           +.++|||||  .++..
T Consensus       137 ----~~~~fD~V~sd~~-~~~~~--------------~~~d~~~~--l~~L~~-----------~~r~LkpGG~~~fv~k  184 (265)
T 2oxt_A          137 ----PVERTDVIMCDVG-ESSPK--------------WSVESERT--IKILEL-----------LEKWKVKNPSADFVVK  184 (265)
T ss_dssp             ----CCCCCSEEEECCC-CCCSC--------------HHHHHHHH--HHHHHH-----------HHHHHHHCTTCEEEEE
T ss_pred             ----CCCCCcEEEEeCc-ccCCc--------------cchhHHHH--HHHHHH-----------HHHHhccCCCeEEEEE
Confidence                2468999999875 22211              11111111  126666           889999999  99886


Q ss_pred             ecCCCccccH---HHHHHHHHHCCCcE
Q psy17793        236 TCSLSVEENE---AVIAWILHRHPEVE  259 (397)
Q Consensus       236 TCS~~~eEnE---~vV~~~L~~~~~~~  259 (397)
                      +  +. .++.   +.+..+.+.+..+.
T Consensus       185 v--~~-~~~~~~~~~l~~l~~~f~~v~  208 (265)
T 2oxt_A          185 V--LC-PYSVEVMERLSVMQRKWGGGL  208 (265)
T ss_dssp             E--SC-TTSHHHHHHHHHHHHHHCCEE
T ss_pred             e--CC-CCChhHHHHHHHHHHHcCCEE
Confidence            4  33 3444   44444444454433

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.96  E-value=1.1e-09  Score=117.77  Aligned_cols=117  Identities=11%  Similarity=0.064  Sum_probs=87.4

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh------CCCcEEEEEcccccccc
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL------QLSSIQTHVYDSTRINT  150 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~------g~~~v~~~~~D~~~~~~  150 (397)
                      +...+...++.+|||+|||+|..+..++...++..+|+|+|+|+.+++.++++++..      +..+|+++.+|+..+. 
T Consensus       713 LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp-  791 (950)
T 3htx_A          713 ALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD-  791 (950)
T ss_dssp             HHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC-
T ss_pred             HHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC-
Confidence            344555568899999999999999988876433479999999999999999987754      6678999999998763 


Q ss_pred             cchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc
Q psy17793        151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG  230 (397)
Q Consensus       151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG  230 (397)
                                +..+.||+|++.--          .....    ..       ....++++           +.++|||| 
T Consensus       792 ----------~~d~sFDlVV~~eV----------LeHL~----dp-------~l~~~L~e-----------I~RvLKPG-  828 (950)
T 3htx_A          792 ----------SRLHDVDIGTCLEV----------IEHME----ED-------QACEFGEK-----------VLSLFHPK-  828 (950)
T ss_dssp             ----------TTSCSCCEEEEESC----------GGGSC----HH-------HHHHHHHH-----------HHHTTCCS-
T ss_pred             ----------cccCCeeEEEEeCc----------hhhCC----hH-------HHHHHHHH-----------HHHHcCCC-
Confidence                      34578999998221          11111    11       11456777           89999999 


Q ss_pred             EEEEEec
Q psy17793        231 ILVYCTC  237 (397)
Q Consensus       231 ~lvysTC  237 (397)
                      .++++|.
T Consensus       829 ~LIISTP  835 (950)
T 3htx_A          829 LLIVSTP  835 (950)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            8888764

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.96  E-value=1.2e-09  Score=109.15  Aligned_cols=116  Identities=20%  Similarity=0.239  Sum_probs=85.0

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .+|.+|||+|||+|..++.+|+.  +..+|+|+|.|+ +++.++++++.+|+.+ |+++.+|+..+.            .
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~a--GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~------------l  146 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQA--GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE------------L  146 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC------------C
T ss_pred             cCCCEEEEeCCCccHHHHHHHHh--CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec------------C
Confidence            46899999999999998876663  567999999996 7899999999999975 999999998763            3


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC--
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS--  240 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~--  240 (397)
                      +++||+|+++.-  |.+..     .      +..+       ..++..           .-++|||||+++-+.++++  
T Consensus       147 pe~~DvivsE~~--~~~l~-----~------e~~l-------~~~l~a-----------~~r~Lkp~G~~iP~~atly~a  195 (376)
T 4hc4_A          147 PEQVDAIVSEWM--GYGLL-----H------ESML-------SSVLHA-----------RTKWLKEGGLLLPASAELFIV  195 (376)
T ss_dssp             SSCEEEEECCCC--BTTBT-----T------TCSH-------HHHHHH-----------HHHHEEEEEEEESCEEEEEEE
T ss_pred             CccccEEEeecc--ccccc-----c------cchh-------hhHHHH-----------HHhhCCCCceECCccceEEEE
Confidence            468999997543  11100     0      0111       233444           5689999999988877754  


Q ss_pred             ccccH
Q psy17793        241 VEENE  245 (397)
Q Consensus       241 ~eEnE  245 (397)
                      +-|.+
T Consensus       196 pie~~  200 (376)
T 4hc4_A          196 PISDQ  200 (376)
T ss_dssp             EECCH
T ss_pred             Eeccc
Confidence            44544

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.95  E-value=4.6e-10  Score=101.52  Aligned_cols=99  Identities=18%  Similarity=0.214  Sum_probs=75.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      ++.+|||+|||+|..+..+     +..+|+++|+|+.+++.+++++     .++.+...|+..+.           +..+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~-----------~~~~   94 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALP-----------FPGE   94 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCC-----------SCSS
T ss_pred             CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCC-----------CCCC
Confidence            7889999999999988765     2238999999999999998876     56788888887652           3457


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      +||+|++.-.          .....         .    ..++|++           +.++|||||.+++++..
T Consensus        95 ~fD~v~~~~~----------l~~~~---------~----~~~~l~~-----------~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A           95 SFDVVLLFTT----------LEFVE---------D----VERVLLE-----------ARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             CEEEEEEESC----------TTTCS---------C----HHHHHHH-----------HHHHEEEEEEEEEEEEC
T ss_pred             cEEEEEEcCh----------hhhcC---------C----HHHHHHH-----------HHHHcCCCCEEEEEecC
Confidence            8999997432          00001         0    1466777           88999999999998643

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.95  E-value=3.2e-09  Score=110.61  Aligned_cols=110  Identities=17%  Similarity=0.107  Sum_probs=88.1

Q ss_pred             CCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCC------------CcEEEEEeCCHHHHHHHHHHH
Q psy17793         63 DSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMND------------TGTLIALDKSKPRVTKLEETI  130 (397)
Q Consensus        63 ~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~------------~~~V~avD~s~~rl~~l~~n~  130 (397)
                      ..|.||-...-+.+++.++.+++|++|+|-|||+|++.+.+...+..            ...++|+|+++.....++.|+
T Consensus       195 ~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl  274 (530)
T 3ufb_A          195 DSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNL  274 (530)
T ss_dssp             SCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHH
T ss_pred             cCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHH
Confidence            46888888888889999999999999999999999999887765532            246999999999999999999


Q ss_pred             HHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC
Q psy17793        131 KKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG  179 (397)
Q Consensus       131 ~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G  179 (397)
                      -..|+..-.+..+|.......       ......+||+|+.|||.++..
T Consensus       275 ~lhg~~~~~I~~~dtL~~~~~-------~~~~~~~fD~Il~NPPf~~~~  316 (530)
T 3ufb_A          275 LLHGLEYPRIDPENSLRFPLR-------EMGDKDRVDVILTNPPFGGEE  316 (530)
T ss_dssp             HHHTCSCCEEECSCTTCSCGG-------GCCGGGCBSEEEECCCSSCBC
T ss_pred             HhcCCccccccccccccCchh-------hhcccccceEEEecCCCCccc
Confidence            999987667778887654211       011235799999999997653

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.94  E-value=6.3e-10  Score=106.45  Aligned_cols=117  Identities=15%  Similarity=0.130  Sum_probs=75.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHc---CCCcEE--EEEeCCHHHHHHHHHHHHHh-CCCcEEEEEcc--cccccccchh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLM---NDTGTL--IALDKSKPRVTKLEETIKKL-QLSSIQTHVYD--STRINTSSQI  154 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~---~~~~~V--~avD~s~~rl~~l~~n~~~~-g~~~v~~~~~D--~~~~~~~~~~  154 (397)
                      +.++.+|||+|||+|..+..++..+   .+...|  +++|.|+.+++.++++++.. ++.++.+...+  +..+..    
T Consensus        50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~----  125 (292)
T 2aot_A           50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQS----  125 (292)
T ss_dssp             TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHH----
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhh----
Confidence            3567899999999998876554332   134544  99999999999999998764 66776654333  322100    


Q ss_pred             hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793        155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY  234 (397)
Q Consensus       155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy  234 (397)
                       ....++..++||+|++--          .....            .+. .+.|++           +.++|||||+++.
T Consensus       126 -~~~~~~~~~~fD~V~~~~----------~l~~~------------~d~-~~~l~~-----------~~r~LkpgG~l~i  170 (292)
T 2aot_A          126 -RMLEKKELQKWDFIHMIQ----------MLYYV------------KDI-PATLKF-----------FHSLLGTNAKMLI  170 (292)
T ss_dssp             -HHHTTTCCCCEEEEEEES----------CGGGC------------SCH-HHHHHH-----------HHHTEEEEEEEEE
T ss_pred             -hhccccCCCceeEEEEee----------eeeec------------CCH-HHHHHH-----------HHHHcCCCcEEEE
Confidence             000013457899999711          11111            111 456777           8999999999998


Q ss_pred             EecC
Q psy17793        235 CTCS  238 (397)
Q Consensus       235 sTCS  238 (397)
                      ++.+
T Consensus       171 ~~~~  174 (292)
T 2aot_A          171 IVVS  174 (292)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            8543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.94  E-value=5.6e-09  Score=102.56  Aligned_cols=113  Identities=19%  Similarity=0.118  Sum_probs=87.3

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ..++..++.+|||+|||+|..+..++... +..+++++|+ +.+++.++++++..|+. ++++..+|+...         
T Consensus       177 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------  245 (360)
T 1tw3_A          177 AAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP---------  245 (360)
T ss_dssp             HHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC---------
T ss_pred             HhCCCccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC---------
Confidence            34456778899999999999999999875 4578999999 99999999999999986 699999998753         


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                         ++ ..||+|++.-.          ...+.    ...       ..++|++           +.++|||||++++...
T Consensus       246 ---~~-~~~D~v~~~~v----------l~~~~----~~~-------~~~~l~~-----------~~~~L~pgG~l~i~e~  289 (360)
T 1tw3_A          246 ---LP-RKADAIILSFV----------LLNWP----DHD-------AVRILTR-----------CAEALEPGGRILIHER  289 (360)
T ss_dssp             ---CS-SCEEEEEEESC----------GGGSC----HHH-------HHHHHHH-----------HHHTEEEEEEEEEEEC
T ss_pred             ---CC-CCccEEEEccc----------ccCCC----HHH-------HHHHHHH-----------HHHhcCCCcEEEEEEE
Confidence               12 34999997322          22222    111       1567888           8999999999998765


Q ss_pred             C
Q psy17793        238 S  238 (397)
Q Consensus       238 S  238 (397)
                      .
T Consensus       290 ~  290 (360)
T 1tw3_A          290 D  290 (360)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.94  E-value=3.3e-09  Score=102.63  Aligned_cols=87  Identities=14%  Similarity=0.150  Sum_probs=73.6

Q ss_pred             hHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc
Q psy17793         73 PSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS  152 (397)
Q Consensus        73 ~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~  152 (397)
                      ....++..+++.++++|||+|||+|..|..++..   ..+|+|+|+|+.+++.++++++  +..+++++++|+.++.   
T Consensus        38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~---  109 (295)
T 3gru_A           38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVD---  109 (295)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSC---
T ss_pred             HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCC---
Confidence            3445566778889999999999999999999986   4699999999999999999988  4468999999998763   


Q ss_pred             hhhHHHhhhcccCccEEEEcCCC
Q psy17793        153 QIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       153 ~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                              +....||+|+.|+|+
T Consensus       110 --------~~~~~fD~Iv~NlPy  124 (295)
T 3gru_A          110 --------LNKLDFNKVVANLPY  124 (295)
T ss_dssp             --------GGGSCCSEEEEECCG
T ss_pred             --------cccCCccEEEEeCcc
Confidence                    334579999999993

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.94  E-value=4.7e-09  Score=101.26  Aligned_cols=116  Identities=16%  Similarity=0.115  Sum_probs=83.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-------CCCcEEEEEcccccccccchhhH
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL-------QLSSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~-------g~~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      .++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.++++....       +..++.++++|+......     
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-----  105 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLI-----  105 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCST-----
T ss_pred             CCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchh-----
Confidence            36789999999999999988873  4679999999999999999998876       445799999999765200     


Q ss_pred             HHhhh--cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793        157 ERMKL--QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY  234 (397)
Q Consensus       157 ~~~~~--~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy  234 (397)
                        .++  ..++||+|++.-.           .+|.    ....   . ....+|.+           +.++|||||.++.
T Consensus       106 --~~~~~~~~~fD~V~~~~~-----------l~~~----~~~~---~-~~~~~l~~-----------~~~~LkpgG~li~  153 (313)
T 3bgv_A          106 --DKFRDPQMCFDICSCQFV-----------CHYS----FESY---E-QADMMLRN-----------ACERLSPGGYFIG  153 (313)
T ss_dssp             --TTCSSTTCCEEEEEEETC-----------GGGG----GGSH---H-HHHHHHHH-----------HHTTEEEEEEEEE
T ss_pred             --hhcccCCCCEEEEEEecc-----------hhhc----cCCH---H-HHHHHHHH-----------HHHHhCCCcEEEE
Confidence              012  2348999997321           1110    0011   1 11567888           9999999999999


Q ss_pred             EecC
Q psy17793        235 CTCS  238 (397)
Q Consensus       235 sTCS  238 (397)
                      +|..
T Consensus       154 ~~~~  157 (313)
T 3bgv_A          154 TTPN  157 (313)
T ss_dssp             EEEC
T ss_pred             ecCC
Confidence            8654

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.94  E-value=2e-08  Score=97.71  Aligned_cols=110  Identities=13%  Similarity=0.057  Sum_probs=85.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++++...++ ++|++..+|+...            +
T Consensus       167 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------------~  232 (332)
T 3i53_A          167 WAALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP------------L  232 (332)
T ss_dssp             CGGGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC------------C
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC------------C
Confidence            3456899999999999999999875 4578999999 9999999999999987 4699999998632            2


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                      + ..||+|++-          .....|.    ..       .+.++|++           +.+.|||||+|+......
T Consensus       233 p-~~~D~v~~~----------~vlh~~~----~~-------~~~~~l~~-----------~~~~L~pgG~l~i~e~~~  277 (332)
T 3i53_A          233 P-AGAGGYVLS----------AVLHDWD----DL-------SAVAILRR-----------CAEAAGSGGVVLVIEAVA  277 (332)
T ss_dssp             C-CSCSEEEEE----------SCGGGSC----HH-------HHHHHHHH-----------HHHHHTTTCEEEEEECCC
T ss_pred             C-CCCcEEEEe----------hhhccCC----HH-------HHHHHHHH-----------HHHhcCCCCEEEEEeecC
Confidence            2 279999971          2222333    22       12678888           999999999999876543

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.93  E-value=1.6e-09  Score=105.84  Aligned_cols=92  Identities=20%  Similarity=0.185  Sum_probs=73.0

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      +...|.+++|+.++|+++|.||.|..+++.+++.|+|+|+|.|+.+++.++ ++   .-.+++++.+++.++...     
T Consensus        49 vl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~~~Rv~lv~~nF~~l~~~-----  119 (347)
T 3tka_A           49 AVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---DDPRFSIIHGPFSALGEY-----  119 (347)
T ss_dssp             HHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---CCTTEEEEESCGGGHHHH-----
T ss_pred             HHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---cCCcEEEEeCCHHHHHHH-----
Confidence            345677899999999999999999999998888899999999999999884 33   335799999998876311     


Q ss_pred             HHhhh-cccCccEEEEcCCCCCC
Q psy17793        157 ERMKL-QKESFDRILLDAPCSGF  178 (397)
Q Consensus       157 ~~~~~-~~~~fD~Il~DpPCSg~  178 (397)
                       .... ..+++|.||+|-.||+.
T Consensus       120 -L~~~g~~~~vDgILfDLGVSS~  141 (347)
T 3tka_A          120 -VAERDLIGKIDGILLDLGVSSP  141 (347)
T ss_dssp             -HHHTTCTTCEEEEEEECSCCHH
T ss_pred             -HHhcCCCCcccEEEECCccCHH
Confidence             0001 11369999999999984

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.91  E-value=2.5e-08  Score=98.10  Aligned_cols=114  Identities=9%  Similarity=0.125  Sum_probs=88.2

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ..++..++.+|||+|||+|..+..++... +..+++++|+ +.+++.+++++++.++.+ +++..+|+....        
T Consensus       184 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------  253 (359)
T 1x19_A          184 EEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES--------  253 (359)
T ss_dssp             HHCCCTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSC--------
T ss_pred             HhcCCCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCC--------
Confidence            34556778899999999999999999875 4579999999 999999999999999865 999999997642        


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                         +.  .+|+|++.-          ....+.    ..       ...++|++           +.+.|||||+++....
T Consensus       254 ---~~--~~D~v~~~~----------vlh~~~----d~-------~~~~~l~~-----------~~~~L~pgG~l~i~e~  296 (359)
T 1x19_A          254 ---YP--EADAVLFCR----------ILYSAN----EQ-------LSTIMCKK-----------AFDAMRSGGRLLILDM  296 (359)
T ss_dssp             ---CC--CCSEEEEES----------CGGGSC----HH-------HHHHHHHH-----------HHTTCCTTCEEEEEEE
T ss_pred             ---CC--CCCEEEEec----------hhccCC----HH-------HHHHHHHH-----------HHHhcCCCCEEEEEec
Confidence               22  349999722          122233    21       12677888           9999999999988765


Q ss_pred             CC
Q psy17793        238 SL  239 (397)
Q Consensus       238 S~  239 (397)
                      ..
T Consensus       297 ~~  298 (359)
T 1x19_A          297 VI  298 (359)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.91  E-value=4.4e-08  Score=97.04  Aligned_cols=115  Identities=13%  Similarity=0.116  Sum_probs=88.8

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHH
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      .++..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++++...++ ++|++..+|+...          
T Consensus       197 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~----------  264 (369)
T 3gwz_A          197 AYDFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET----------  264 (369)
T ss_dssp             HSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTC----------
T ss_pred             hCCCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCC----------
Confidence            3455678899999999999999999875 4679999999 9999999999999987 4699999998732          


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                        ++ ..||+|++-          .....|.    ...       ..++|++           +.+.|||||+|+.....
T Consensus       265 --~p-~~~D~v~~~----------~vlh~~~----d~~-------~~~~L~~-----------~~~~L~pgG~l~i~e~~  309 (369)
T 3gwz_A          265 --IP-DGADVYLIK----------HVLHDWD----DDD-------VVRILRR-----------IATAMKPDSRLLVIDNL  309 (369)
T ss_dssp             --CC-SSCSEEEEE----------SCGGGSC----HHH-------HHHHHHH-----------HHTTCCTTCEEEEEEEB
T ss_pred             --CC-CCceEEEhh----------hhhccCC----HHH-------HHHHHHH-----------HHHHcCCCCEEEEEEec
Confidence              23 279999972          1222333    111       2578888           99999999999987665


Q ss_pred             CCc
Q psy17793        239 LSV  241 (397)
Q Consensus       239 ~~~  241 (397)
                      ...
T Consensus       310 ~~~  312 (369)
T 3gwz_A          310 IDE  312 (369)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            443

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.91  E-value=1.8e-09  Score=101.38  Aligned_cols=101  Identities=16%  Similarity=0.145  Sum_probs=76.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      ++.+|||+|||+|..+..++..   +.+|+++|+|+.+++.++++..    .+  +...|+..+.           +..+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~-----------~~~~  113 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLP-----------FPSG  113 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCC-----------SCTT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCC-----------CCCC
Confidence            7889999999999999988874   4689999999999999988754    22  6778877652           3457


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      +||.|++...                  + ....  .. ...+|++           +.++|||||+++.++.+
T Consensus       114 ~fD~v~~~~~------------------~-~~~~--~~-~~~~l~~-----------~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          114 AFEAVLALGD------------------V-LSYV--EN-KDKAFSE-----------IRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             CEEEEEECSS------------------H-HHHC--SC-HHHHHHH-----------HHHHEEEEEEEEEEEEB
T ss_pred             CEEEEEEcch------------------h-hhcc--cc-HHHHHHH-----------HHHHcCCCeEEEEEeCC
Confidence            8999997322                  0 1110  11 2667888           89999999999998665

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.90  E-value=1e-08  Score=94.89  Aligned_cols=112  Identities=16%  Similarity=0.178  Sum_probs=81.3

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      .+.++.+|||+|||+|..+..++...   .+|+++|+|+.+++.+++++   ...++++.++|+......       ..+
T Consensus        53 ~~~~~~~vLD~GcG~G~~~~~la~~~---~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~-------~~~  119 (245)
T 3ggd_A           53 LFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQA-------AQI  119 (245)
T ss_dssp             TSCTTSCEEEETCTTSHHHHHHHHHS---SCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHH-------HHH
T ss_pred             ccCCCCeEEEEcCCCCHHHHHHHHhC---CCEEEEECCHHHHHHHHHhC---cccCceEEECcccccccc-------ccc
Confidence            35778899999999999999999864   28999999999999999876   335799999999875311       111


Q ss_pred             c-ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        162 Q-KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       162 ~-~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      . ...||+|+++....          ...    ...       ..++|++           +.++|||||+++.++..
T Consensus       120 ~~~~~~d~v~~~~~~~----------~~~----~~~-------~~~~l~~-----------~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          120 HSEIGDANIYMRTGFH----------HIP----VEK-------RELLGQS-----------LRILLGKQGAMYLIELG  165 (245)
T ss_dssp             HHHHCSCEEEEESSST----------TSC----GGG-------HHHHHHH-----------HHHHHTTTCEEEEEEEC
T ss_pred             ccccCccEEEEcchhh----------cCC----HHH-------HHHHHHH-----------HHHHcCCCCEEEEEeCC
Confidence            1 13599999854311          111    111       1566777           88999999998887654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.89  E-value=2.9e-09  Score=97.61  Aligned_cols=106  Identities=15%  Similarity=0.178  Sum_probs=78.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..+..++...   .+|+++|+|+.+++.+++++     .++++...|+..+.           + .
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~-----------~-~   98 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFR-----------L-G   98 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCC-----------C-S
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHcc-----------c-C
Confidence            567899999999999999999863   38999999999999998763     46889999987652           2 4


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                      ++||+|++---        .+....+    ..       ...++|++           +.++|||||.++.+++..
T Consensus        99 ~~~D~v~~~~~--------~~~~~~~----~~-------~~~~~l~~-----------~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A           99 RKFSAVVSMFS--------SVGYLKT----TE-------ELGAAVAS-----------FAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             SCEEEEEECTT--------GGGGCCS----HH-------HHHHHHHH-----------HHHTEEEEEEEEECCCCC
T ss_pred             CCCcEEEEcCc--------hHhhcCC----HH-------HHHHHHHH-----------HHHhcCCCeEEEEEeccC
Confidence            68999995110        0000001    11       12567788           899999999999986653

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.89  E-value=1.8e-09  Score=116.01  Aligned_cols=150  Identities=12%  Similarity=0.037  Sum_probs=95.7

Q ss_pred             CCCcEEEechhHHHHHhc----cCC--CCCCeEEEEcCCCChHHHHHHHHcC--CCcEEEEEeCCHHHHHHH--HHHHHH
Q psy17793         63 DSSMGILQNLPSILAGHY----LDV--QPGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKL--EETIKK  132 (397)
Q Consensus        63 ~~g~~~~Qd~~S~l~~~~----L~~--~~g~~VLDlcagpG~kt~~lA~~~~--~~~~V~avD~s~~rl~~l--~~n~~~  132 (397)
                      ..|.|+....-+.+++.+    +..  .++.+|||.|||+|++.+.++..++  ....++|+|+++.+++.+  +.|+..
T Consensus       293 k~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~l  372 (878)
T 3s1s_A          293 HEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLF  372 (878)
T ss_dssp             CCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTS
T ss_pred             cCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence            456666666555555555    332  4688999999999999999988764  236799999999999999  666554


Q ss_pred             ----hCCCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHH---------
Q psy17793        133 ----LQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS---------  199 (397)
Q Consensus       133 ----~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~---------  199 (397)
                          .|+.+..+...|+....          ......||+|++|||+++....+......     ...+..         
T Consensus       373 N~LlhGi~~~~I~~dD~L~~~----------~~~~~kFDVVIgNPPYg~~~~~~~e~kd~-----~~r~~~g~p~~p~s~  437 (878)
T 3s1s_A          373 PQLVSSNNAPTITGEDVCSLN----------PEDFANVSVVVMNPPYVSGVTDPAIKRKF-----AHKIIQLTGNRPQTL  437 (878)
T ss_dssp             TTTCBTTBCCEEECCCGGGCC----------GGGGTTEEEEEECCBCCSSCCCHHHHHHH-----HHHHHHHHSSCCSSC
T ss_pred             hhhhcCCCcceEEecchhccc----------ccccCCCCEEEECCCccccccchhhhhhH-----HHHhhhhcccccccc
Confidence                23333455555555421          12346799999999987533211100000     000000         


Q ss_pred             --HHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        200 --YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       200 --l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                        ...+...++.+           +.++||+||++++.+=.
T Consensus       438 ~G~~DLy~aFIe~-----------Al~lLKpGGrLAfIlP~  467 (878)
T 3s1s_A          438 FGQIGVEALFLEL-----------VTELVQDGTVISAIMPK  467 (878)
T ss_dssp             SSSCCHHHHHHHH-----------HHHHSCTTCEEEEEEET
T ss_pred             ccccchHHHHHHH-----------HHHhcCCCcEEEEEECh
Confidence              01133567777           99999999999887543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.89  E-value=2.6e-08  Score=98.48  Aligned_cols=114  Identities=13%  Similarity=0.175  Sum_probs=86.6

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ....+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++++.++ .+|++..+|+....         .+++
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~p  246 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRD---------VPFP  246 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSS---------CCCC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccC---------CCCC
Confidence            456799999999999999999875 4579999999 9999999999998887 46999999987631         0122


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV  241 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~  241 (397)
                       +.||+|++-          .+...|.    ....       .++|++           +.+.|||||+|+........
T Consensus       247 -~~~D~v~~~----------~vlh~~~----~~~~-------~~~l~~-----------~~~~L~pgG~l~i~e~~~~~  292 (363)
T 3dp7_A          247 -TGFDAVWMS----------QFLDCFS----EEEV-------ISILTR-----------VAQSIGKDSKVYIMETLWDR  292 (363)
T ss_dssp             -CCCSEEEEE----------SCSTTSC----HHHH-------HHHHHH-----------HHHHCCTTCEEEEEECCTTS
T ss_pred             -CCcCEEEEe----------chhhhCC----HHHH-------HHHHHH-----------HHHhcCCCcEEEEEeeccCC
Confidence             579999971          1222333    2221       567888           99999999999887654433

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.86  E-value=9e-09  Score=110.63  Aligned_cols=88  Identities=19%  Similarity=0.304  Sum_probs=72.1

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcC-----------------------------------------CCcEEEEEe
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMN-----------------------------------------DTGTLIALD  117 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~-----------------------------------------~~~~V~avD  117 (397)
                      ......++..|||.|||+|++.+.+|....                                         ....|+|+|
T Consensus       184 ~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~D  263 (703)
T 3v97_A          184 MRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSD  263 (703)
T ss_dssp             HHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_pred             HhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEE
Confidence            344567889999999999999998887531                                         125799999


Q ss_pred             CCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCC
Q psy17793        118 KSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       118 ~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                      +|+.+++.+++|++++|+.+ |++.++|+..+..         +...+.||+|++|||+
T Consensus       264 id~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~---------~~~~~~~d~Iv~NPPY  313 (703)
T 3v97_A          264 SDARVIQRARTNARLAGIGELITFEVKDVAQLTN---------PLPKGPYGTVLSNPPY  313 (703)
T ss_dssp             SCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCC---------SCTTCCCCEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHcCCCCceEEEECChhhCcc---------ccccCCCCEEEeCCCc
Confidence            99999999999999999986 9999999987631         1222379999999997

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.86  E-value=6e-09  Score=95.11  Aligned_cols=121  Identities=14%  Similarity=0.182  Sum_probs=84.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      ++.+|||+|||+|..+..++..       +++|+|+.+++.++++       ++++...|+..+.           +..+
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~-----------~~~~  101 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLP-----------LKDE  101 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCC-----------SCTT
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCC-----------CCCC
Confidence            3789999999999998766542       9999999999998876       5788888887652           3456


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc--
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE--  242 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e--  242 (397)
                      +||+|++.-.          .....            . ..++|++           +.++|||||.++.++......  
T Consensus       102 ~fD~v~~~~~----------l~~~~------------~-~~~~l~~-----------~~~~L~pgG~l~i~~~~~~~~~~  147 (219)
T 1vlm_A          102 SFDFALMVTT----------ICFVD------------D-PERALKE-----------AYRILKKGGYLIVGIVDRESFLG  147 (219)
T ss_dssp             CEEEEEEESC----------GGGSS------------C-HHHHHHH-----------HHHHEEEEEEEEEEEECSSSHHH
T ss_pred             CeeEEEEcch----------Hhhcc------------C-HHHHHHH-----------HHHHcCCCcEEEEEEeCCccHHH
Confidence            8999998432          00011            1 1456777           889999999999986542111  


Q ss_pred             ------------------ccHHHHHHHHHHCCCcEEEecCc
Q psy17793        243 ------------------ENEAVIAWILHRHPEVELVQTLP  265 (397)
Q Consensus       243 ------------------EnE~vV~~~L~~~~~~~l~~~~~  265 (397)
                                        -+.+.+..++++. +++.+.+..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gf~~~~~~~  187 (219)
T 1vlm_A          148 REYEKNKEKSVFYKNARFFSTEELMDLMRKA-GFEEFKVVQ  187 (219)
T ss_dssp             HHHHHTTTC-CCSTTCCCCCHHHHHHHHHHT-TCEEEEEEE
T ss_pred             HHHHHHhcCcchhcccccCCHHHHHHHHHHC-CCeEEEEec
Confidence                              1345566677776 576665543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.85  E-value=3.6e-09  Score=99.41  Aligned_cols=97  Identities=20%  Similarity=0.166  Sum_probs=75.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..+..++..+ ++.+|+++|+|+.+++.++++.     .++.+...|+..+.           +..
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~-----------~~~  146 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLP-----------FSD  146 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCS-----------BCT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCC-----------CCC
Confidence            578899999999999999999875 3569999999999999988763     46788888887652           345


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      ++||+|++...                              ...+++           +.++|||||+++.++-.
T Consensus       147 ~~fD~v~~~~~------------------------------~~~l~~-----------~~~~L~pgG~l~~~~~~  180 (269)
T 1p91_A          147 TSMDAIIRIYA------------------------------PCKAEE-----------LARVVKPGGWVITATPG  180 (269)
T ss_dssp             TCEEEEEEESC------------------------------CCCHHH-----------HHHHEEEEEEEEEEEEC
T ss_pred             CceeEEEEeCC------------------------------hhhHHH-----------HHHhcCCCcEEEEEEcC
Confidence            68999997321                              012344           77889999999998643

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.84  E-value=3.8e-09  Score=100.26  Aligned_cols=90  Identities=14%  Similarity=0.124  Sum_probs=71.5

Q ss_pred             HHHHHhccCCCCC--CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC--------C-CcEEEEE
Q psy17793         74 SILAGHYLDVQPG--QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ--------L-SSIQTHV  142 (397)
Q Consensus        74 S~l~~~~L~~~~g--~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g--------~-~~v~~~~  142 (397)
                      ...+..++.+++|  ++|||+|||.|..++.+|..   +++|+++|+++..++.+++++++..        + .++++++
T Consensus        75 ~e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~  151 (258)
T 2oyr_A           75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (258)
T ss_dssp             GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred             HHHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEE
Confidence            3445566777777  89999999999999999986   3579999999999888888877552        3 4699999


Q ss_pred             cccccccccchhhHHHhhhcccCccEEEEcCCCC
Q psy17793        143 YDSTRINTSSQIDIERMKLQKESFDRILLDAPCS  176 (397)
Q Consensus       143 ~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCS  176 (397)
                      +|+..+...         + ..+||+|++|||+-
T Consensus       152 ~D~~~~L~~---------~-~~~fDvV~lDP~y~  175 (258)
T 2oyr_A          152 ASSLTALTD---------I-TPRPQVVYLDPMFP  175 (258)
T ss_dssp             SCHHHHSTT---------C-SSCCSEEEECCCCC
T ss_pred             CCHHHHHHh---------C-cccCCEEEEcCCCC
Confidence            999876422         2 24699999999963

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.84  E-value=3.6e-08  Score=95.80  Aligned_cols=111  Identities=15%  Similarity=0.157  Sum_probs=85.5

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHh
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      ++..+ .+|||+|||+|..+..++... +..+++++|+ +.+++.+++++.+.|+ ++|++..+|+...           
T Consensus       164 ~~~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----------  229 (334)
T 2ip2_A          164 LDFRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE-----------  229 (334)
T ss_dssp             SCCTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC-----------
T ss_pred             CCCCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC-----------
Confidence            34455 899999999999999999875 4569999999 9999999999988876 4699999998652           


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                       ++ +.||+|++.-          ....|.    ...       ..++|++           +.+.|||||+|+......
T Consensus       230 -~~-~~~D~v~~~~----------vl~~~~----~~~-------~~~~l~~-----------~~~~L~pgG~l~i~e~~~  275 (334)
T 2ip2_A          230 -VP-SNGDIYLLSR----------IIGDLD----EAA-------SLRLLGN-----------CREAMAGDGRVVVIERTI  275 (334)
T ss_dssp             -CC-SSCSEEEEES----------CGGGCC----HHH-------HHHHHHH-----------HHHHSCTTCEEEEEECCB
T ss_pred             -CC-CCCCEEEEch----------hccCCC----HHH-------HHHHHHH-----------HHHhcCCCCEEEEEEecc
Confidence             22 5799999722          222233    222       1567888           899999999999886544

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.83  E-value=2.8e-08  Score=97.27  Aligned_cols=116  Identities=16%  Similarity=0.192  Sum_probs=88.6

Q ss_pred             cCCCC-CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHH
Q psy17793         81 LDVQP-GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        81 L~~~~-g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      ++..+ +.+|||+|||+|..+..++... +..+++++|+ +..++.+++++.+.++. +|++..+|+....         
T Consensus       174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------  242 (352)
T 3mcz_A          174 LGVFARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDAR---------  242 (352)
T ss_dssp             CGGGTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGG---------
T ss_pred             CCCcCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCc---------
Confidence            34455 7899999999999999999875 4579999999 88999999999999885 4999999987652         


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                       .+..+.||+|++.          .....|.    ...       ..++|++           +.+.|||||+|+.....
T Consensus       243 -~~~~~~~D~v~~~----------~vlh~~~----~~~-------~~~~l~~-----------~~~~L~pgG~l~i~e~~  289 (352)
T 3mcz_A          243 -NFEGGAADVVMLN----------DCLHYFD----ARE-------AREVIGH-----------AAGLVKPGGALLILTMT  289 (352)
T ss_dssp             -GGTTCCEEEEEEE----------SCGGGSC----HHH-------HHHHHHH-----------HHHTEEEEEEEEEEEEC
T ss_pred             -ccCCCCccEEEEe----------cccccCC----HHH-------HHHHHHH-----------HHHHcCCCCEEEEEEec
Confidence             1134569999972          1222333    222       2667888           99999999999887654


Q ss_pred             CC
Q psy17793        239 LS  240 (397)
Q Consensus       239 ~~  240 (397)
                      +.
T Consensus       290 ~~  291 (352)
T 3mcz_A          290 MN  291 (352)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.83  E-value=1.1e-08  Score=97.36  Aligned_cols=141  Identities=13%  Similarity=0.065  Sum_probs=85.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-----------------CC-----------
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL-----------------QL-----------  135 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~-----------------g~-----------  135 (397)
                      .++.+|||+|||+|..+. ++... ...+|+|+|+|+.+++.+++++++.                 |.           
T Consensus        70 ~~~~~vLDiGcG~G~~~~-l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  147 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQL-LSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  147 (289)
T ss_dssp             SCCSEEEEETCTTCCGGG-TTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHH-Hhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence            367899999999999443 33322 3469999999999999998866431                 10           


Q ss_pred             --CcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHH-HHHHHHHHHHHHh
Q psy17793        136 --SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS-YANIQKKLLQAVY  212 (397)
Q Consensus       136 --~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~-l~~~Q~~lL~~~~  212 (397)
                        ..++++.+|+......     ....+..++||+|++.--                  + ..+.. +.. ..++|++  
T Consensus       148 ~~~~~~~~~~D~~~~~~~-----~~~~~~~~~fD~V~~~~~------------------l-~~~~~~~~~-~~~~l~~--  200 (289)
T 2g72_A          148 RARVKRVLPIDVHQPQPL-----GAGSPAPLPADALVSAFC------------------L-EAVSPDLAS-FQRALDH--  200 (289)
T ss_dssp             HHHEEEEECCCTTSSSTT-----CSSCSSCSSEEEEEEESC------------------H-HHHCSSHHH-HHHHHHH--
T ss_pred             HhhhceEEecccCCCCCc-----cccccCCCCCCEEEehhh------------------h-hhhcCCHHH-HHHHHHH--
Confidence              0145667787662100     000123467999997221                  1 22000 112 2677888  


Q ss_pred             hhhccccccccccccCCcEEEEEecCC------------CccccHHHHHHHHHHCCCcEEEec
Q psy17793        213 RFVSLFDWQGIPLLKKDGILVYCTCSL------------SVEENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       213 ~f~~~~~~~a~~lLkpgG~lvysTCS~------------~~eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                               +.++|||||+|+++...-            ..--+++.+..+|++. +|+.+.+
T Consensus       201 ---------~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a-Gf~~~~~  253 (289)
T 2g72_A          201 ---------ITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRS-GYKVRDL  253 (289)
T ss_dssp             ---------HHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHT-TEEEEEE
T ss_pred             ---------HHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHc-CCeEEEe
Confidence                     999999999999874210            0011345566667666 4666543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.83  E-value=5.8e-11  Score=111.20  Aligned_cols=94  Identities=12%  Similarity=0.132  Sum_probs=75.7

Q ss_pred             EEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccc
Q psy17793         67 GILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST  146 (397)
Q Consensus        67 ~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~  146 (397)
                      |+.+......+...+++.++++|||+|||+|..+..++..   .++|+|+|+|+.+++.++++++  +..+++++.+|+.
T Consensus        11 fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~---~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~   85 (245)
T 1yub_A           11 FLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDIL   85 (245)
T ss_dssp             BCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCT
T ss_pred             CCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChh
Confidence            4455555666677788889999999999999999999986   2799999999999999988776  3467999999998


Q ss_pred             cccccchhhHHHhhhc-ccCccEEEEcCCCCC
Q psy17793        147 RINTSSQIDIERMKLQ-KESFDRILLDAPCSG  177 (397)
Q Consensus       147 ~~~~~~~~d~~~~~~~-~~~fD~Il~DpPCSg  177 (397)
                      ++.           +. .++| .|++|||+..
T Consensus        86 ~~~-----------~~~~~~f-~vv~n~Py~~  105 (245)
T 1yub_A           86 QFQ-----------FPNKQRY-KIVGNIPYHL  105 (245)
T ss_dssp             TTT-----------CCCSSEE-EEEEECCSSS
T ss_pred             hcC-----------cccCCCc-EEEEeCCccc
Confidence            763           22 2568 8999999654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.81  E-value=4e-09  Score=95.72  Aligned_cols=101  Identities=13%  Similarity=0.187  Sum_probs=75.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..+..++..   +.+++++|+|+.+++.++++.       ..+...|+.....         ++..
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~---------~~~~   91 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN---GTRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDM---------PYEE   91 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT---TCEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCC---------CSCT
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCC---------CCCC
Confidence            67889999999999999988885   379999999999999887653       2577788765321         1345


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                      ++||+|++.-.          .....            .. .++|++           +.++|||||.++.++-
T Consensus        92 ~~fD~v~~~~~----------l~~~~------------~~-~~~l~~-----------~~~~L~~gG~l~~~~~  131 (230)
T 3cc8_A           92 EQFDCVIFGDV----------LEHLF------------DP-WAVIEK-----------VKPYIKQNGVILASIP  131 (230)
T ss_dssp             TCEEEEEEESC----------GGGSS------------CH-HHHHHH-----------TGGGEEEEEEEEEEEE
T ss_pred             CccCEEEECCh----------hhhcC------------CH-HHHHHH-----------HHHHcCCCCEEEEEeC
Confidence            78999997322          11111            11 467788           9999999999999864

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.79  E-value=7.5e-09  Score=98.31  Aligned_cols=100  Identities=10%  Similarity=0.025  Sum_probs=78.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEEcccccccccchhhHHHh
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL----QLSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~----g~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      ..+.+|||+|||+|+.+..++..  + .+|+++|+|+.+++.+++++..+    .-++++++.+|+..+           
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~-----------  136 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-----------  136 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC-----------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH-----------
Confidence            34579999999999999888875  4 79999999999999998876432    234699999998765           


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                        . ++||+|++|.+              .    +..          +++.           +.+.|||||+++..+.+.
T Consensus       137 --~-~~fD~Ii~d~~--------------d----p~~----------~~~~-----------~~~~L~pgG~lv~~~~~~  174 (262)
T 2cmg_A          137 --I-KKYDLIFCLQE--------------P----DIH----------RIDG-----------LKRMLKEDGVFISVAKHP  174 (262)
T ss_dssp             --C-CCEEEEEESSC--------------C----CHH----------HHHH-----------HHTTEEEEEEEEEEEECT
T ss_pred             --H-hhCCEEEECCC--------------C----hHH----------HHHH-----------HHHhcCCCcEEEEEcCCc
Confidence              2 57999999864              0    111          4556           889999999999986553

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.77  E-value=1.5e-08  Score=95.92  Aligned_cols=93  Identities=11%  Similarity=0.131  Sum_probs=73.0

Q ss_pred             EEech-hHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccc
Q psy17793         68 ILQNL-PSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDST  146 (397)
Q Consensus        68 ~~Qd~-~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~  146 (397)
                      ++.|+ ....++..+++.++++|||+|||+|..|..++..   .++|+|+|+|+.+++.++++++.  ..+++++.+|+.
T Consensus        11 FL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~   85 (255)
T 3tqs_A           11 FLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDAL   85 (255)
T ss_dssp             EECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTT
T ss_pred             cccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchH
Confidence            34443 3345666778899999999999999999998875   37999999999999999999875  468999999998


Q ss_pred             cccccchhhHHHhhh-cccCccEEEEcCC
Q psy17793        147 RINTSSQIDIERMKL-QKESFDRILLDAP  174 (397)
Q Consensus       147 ~~~~~~~~d~~~~~~-~~~~fD~Il~DpP  174 (397)
                      ++...        .+ ..+.|| |+.|+|
T Consensus        86 ~~~~~--------~~~~~~~~~-vv~NlP  105 (255)
T 3tqs_A           86 QFDFS--------SVKTDKPLR-VVGNLP  105 (255)
T ss_dssp             TCCGG--------GSCCSSCEE-EEEECC
T ss_pred             hCCHH--------HhccCCCeE-EEecCC
Confidence            87311        01 134688 899999

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.70  E-value=3.4e-08  Score=99.00  Aligned_cols=108  Identities=14%  Similarity=0.122  Sum_probs=74.2

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      ..+.+.++.+|||+|||+|..+..++..   +.+|+++|+|+.+++.++++    ++..+.   ..+..      .+...
T Consensus       101 ~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~---~~~~~------~~~~~  164 (416)
T 4e2x_A          101 ATELTGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRT---DFFEK------ATADD  164 (416)
T ss_dssp             HTTTCSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEEC---SCCSH------HHHHH
T ss_pred             HHhCCCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcce---eeech------hhHhh
Confidence            3455678899999999999999999884   45999999999999988765    543321   11100      11222


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      .++..++||+|++.--          .         ..+   .+ ...+|++           +.++|||||++++++
T Consensus       165 l~~~~~~fD~I~~~~v----------l---------~h~---~d-~~~~l~~-----------~~r~LkpgG~l~i~~  208 (416)
T 4e2x_A          165 VRRTEGPANVIYAANT----------L---------CHI---PY-VQSVLEG-----------VDALLAPDGVFVFED  208 (416)
T ss_dssp             HHHHHCCEEEEEEESC----------G---------GGC---TT-HHHHHHH-----------HHHHEEEEEEEEEEE
T ss_pred             cccCCCCEEEEEECCh----------H---------Hhc---CC-HHHHHHH-----------HHHHcCCCeEEEEEe
Confidence            3355678999997221          1         111   11 1567777           899999999999975

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.68  E-value=5.3e-08  Score=92.84  Aligned_cols=119  Identities=13%  Similarity=0.004  Sum_probs=79.3

Q ss_pred             CCCeEEEEcCCC---ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH-Hhh
Q psy17793         85 PGQKVLDMCAAP---GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE-RMK  160 (397)
Q Consensus        85 ~g~~VLDlcagp---G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~-~~~  160 (397)
                      +..+|||+|||+   |..+..++.. .+..+|+++|+|+.+++.+++++..  ..+++++.+|+...... ..... ...
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~-~~~~~~~~~  152 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYI-LNHPDVRRM  152 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHH-HHSHHHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhh-hccchhhcc
Confidence            447999999999   9876555444 4568999999999999999998843  35799999999764100 00000 001


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                      +...+||.|++.--          ...+.    ...       ...+|++           +.+.|||||+|++++...
T Consensus       153 ~d~~~~d~v~~~~v----------lh~~~----d~~-------~~~~l~~-----------~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          153 IDFSRPAAIMLVGM----------LHYLS----PDV-------VDRVVGA-----------YRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             CCTTSCCEEEETTT----------GGGSC----TTT-------HHHHHHH-----------HHHHSCTTCEEEEEEEBC
T ss_pred             CCCCCCEEEEEech----------hhhCC----cHH-------HHHHHHH-----------HHHhCCCCcEEEEEEecC
Confidence            22247999997211          11111    011       1567888           999999999999987653

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.67  E-value=5.7e-08  Score=92.91  Aligned_cols=108  Identities=19%  Similarity=0.190  Sum_probs=75.8

Q ss_pred             CCCeEEEEcCCCCh----HHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHH--------------Hh---------C
Q psy17793         85 PGQKVLDMCAAPGN----KLTHIALLMND---TGTLIALDKSKPRVTKLEETIK--------------KL---------Q  134 (397)
Q Consensus        85 ~g~~VLDlcagpG~----kt~~lA~~~~~---~~~V~avD~s~~rl~~l~~n~~--------------~~---------g  134 (397)
                      ++.+|||+|||+|.    .+..+++.++.   +.+|+|+|+|+.+++.+++++.              ++         |
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35699999999998    55556665442   3589999999999999998751              11         1


Q ss_pred             ---C-----CcEEEEEcccccccccchhhHHHhhhc-ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHH
Q psy17793        135 ---L-----SSIQTHVYDSTRINTSSQIDIERMKLQ-KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQK  205 (397)
Q Consensus       135 ---~-----~~v~~~~~D~~~~~~~~~~d~~~~~~~-~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~  205 (397)
                         +     .+|.+...|.....           +. .++||+|+|-          .......           .+.|+
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~-----------~~~~~~fDlI~cr----------nvliyf~-----------~~~~~  232 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQ-----------YNVPGPFDAIFCR----------NVMIYFD-----------KTTQE  232 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSS-----------CCCCCCEEEEEEC----------SSGGGSC-----------HHHHH
T ss_pred             ceeechhhcccCeEEecccCCCC-----------CCcCCCeeEEEEC----------CchHhCC-----------HHHHH
Confidence               1     25888888887631           22 3679999980          1111111           12358


Q ss_pred             HHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        206 KLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       206 ~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      +++.+           ..+.|||||.|+..
T Consensus       233 ~vl~~-----------~~~~L~pgG~L~lg  251 (274)
T 1af7_A          233 DILRR-----------FVPLLKPDGLLFAG  251 (274)
T ss_dssp             HHHHH-----------HGGGEEEEEEEEEC
T ss_pred             HHHHH-----------HHHHhCCCcEEEEE
Confidence            88998           99999999999874

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.67  E-value=4.3e-08  Score=93.63  Aligned_cols=94  Identities=13%  Similarity=0.064  Sum_probs=73.7

Q ss_pred             CcEEEech-hHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc
Q psy17793         65 SMGILQNL-PSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY  143 (397)
Q Consensus        65 g~~~~Qd~-~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~  143 (397)
                      |..++.|+ ...-++..+++.++ +|||+|||+|..|..++..   .++|+|+|+|+.+++.+++++..   .+++++++
T Consensus        26 GQnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~~---~~v~vi~~   98 (271)
T 3fut_A           26 GQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLSG---LPVRLVFQ   98 (271)
T ss_dssp             SCCEECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTTT---SSEEEEES
T ss_pred             CccccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcCC---CCEEEEEC
Confidence            33344443 34455667788889 9999999999999999985   36899999999999999998762   57999999


Q ss_pred             ccccccccchhhHHHhhhcc-cCccEEEEcCCCC
Q psy17793        144 DSTRINTSSQIDIERMKLQK-ESFDRILLDAPCS  176 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~-~~fD~Il~DpPCS  176 (397)
                      |+.++.           +.. ..+|.|+.|+|+.
T Consensus        99 D~l~~~-----------~~~~~~~~~iv~NlPy~  121 (271)
T 3fut_A           99 DALLYP-----------WEEVPQGSLLVANLPYH  121 (271)
T ss_dssp             CGGGSC-----------GGGSCTTEEEEEEECSS
T ss_pred             ChhhCC-----------hhhccCccEEEecCccc
Confidence            998763           111 2689999999954

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.67  E-value=4.1e-08  Score=98.40  Aligned_cols=105  Identities=16%  Similarity=0.152  Sum_probs=74.6

Q ss_pred             CCCeEEEEcCC------CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHH
Q psy17793         85 PGQKVLDMCAA------PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        85 ~g~~VLDlcag------pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      ++.+|||+|||      +|+.++.++....+.++|+++|+|+.+.         ....+|+++++|+.++...     ..
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~-----~~  281 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFL-----DR  281 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHH-----HH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchh-----hh
Confidence            46799999999      7888888887654678999999999872         2346799999999875200     00


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      .....++||+|++|.-            . .    ..       -+.+.|++           +.++|||||+++++...
T Consensus       282 l~~~d~sFDlVisdgs------------H-~----~~-------d~~~aL~e-----------l~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          282 IARRYGPFDIVIDDGS------------H-I----NA-------HVRTSFAA-----------LFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             HHHHHCCEEEEEECSC------------C-C----HH-------HHHHHHHH-----------HGGGEEEEEEEEEECGG
T ss_pred             hhcccCCccEEEECCc------------c-c----ch-------hHHHHHHH-----------HHHhcCCCeEEEEEecc
Confidence            0001478999998642            0 0    11       12566777           99999999999998543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.66  E-value=2.1e-08  Score=95.86  Aligned_cols=63  Identities=13%  Similarity=0.044  Sum_probs=52.6

Q ss_pred             CCeEEEEcCCC--ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793         86 GQKVLDMCAAP--GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI  148 (397)
Q Consensus        86 g~~VLDlcagp--G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~  148 (397)
                      ..+|||+|||+  ++.+..++....+..+|+++|.|+.+++.+++++...+..+++++.+|++..
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~  143 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDP  143 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCH
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccCh
Confidence            36899999997  5667777776667889999999999999999988755445799999999875

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.66  E-value=5.5e-08  Score=88.03  Aligned_cols=118  Identities=17%  Similarity=0.205  Sum_probs=81.5

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d  155 (397)
                      +...+....++.+|||+|||+|..+..++      .+|+++|+|+.               ++.+..+|+..+.      
T Consensus        58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~---------------~~~~~~~d~~~~~------  110 (215)
T 2zfu_A           58 IARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL---------------DPRVTVCDMAQVP------  110 (215)
T ss_dssp             HHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS---------------STTEEESCTTSCS------
T ss_pred             HHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC---------------CceEEEeccccCC------
Confidence            44444445677899999999999887552      58999999987               4567788887642      


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                           +..++||+|++...-           ++.  +.           ..+|++           +.++|||||.++++
T Consensus       111 -----~~~~~fD~v~~~~~l-----------~~~--~~-----------~~~l~~-----------~~~~L~~gG~l~i~  150 (215)
T 2zfu_A          111 -----LEDESVDVAVFCLSL-----------MGT--NI-----------RDFLEE-----------ANRVLKPGGLLKVA  150 (215)
T ss_dssp             -----CCTTCEEEEEEESCC-----------CSS--CH-----------HHHHHH-----------HHHHEEEEEEEEEE
T ss_pred             -----CCCCCEeEEEEehhc-----------ccc--CH-----------HHHHHH-----------HHHhCCCCeEEEEE
Confidence                 345689999984320           011  11           456777           88999999999998


Q ss_pred             ecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793        236 TCSLSVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       236 TCS~~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                      +.... ..+.+.+..++++. +++.+.
T Consensus       151 ~~~~~-~~~~~~~~~~l~~~-Gf~~~~  175 (215)
T 2zfu_A          151 EVSSR-FEDVRTFLRAVTKL-GFKIVS  175 (215)
T ss_dssp             ECGGG-CSCHHHHHHHHHHT-TEEEEE
T ss_pred             EcCCC-CCCHHHHHHHHHHC-CCEEEE
Confidence            65432 23556677777776 566554

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.66  E-value=5.6e-08  Score=91.01  Aligned_cols=90  Identities=9%  Similarity=0.125  Sum_probs=71.6

Q ss_pred             EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793         69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI  148 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~  148 (397)
                      .+......+...+++.++++|||+|||+|..|..++..   .++|+|+|+|+.+++.++++++.  ..+++++.+|+.++
T Consensus        14 ~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~   88 (244)
T 1qam_A           14 TSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQF   88 (244)
T ss_dssp             CCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGC
T ss_pred             CCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc---CCeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhC
Confidence            34444455666777888999999999999999999986   27899999999999999998864  35799999999876


Q ss_pred             cccchhhHHHhhhc-ccCccEEEEcCCC
Q psy17793        149 NTSSQIDIERMKLQ-KESFDRILLDAPC  175 (397)
Q Consensus       149 ~~~~~~d~~~~~~~-~~~fD~Il~DpPC  175 (397)
                      .           +. ...| .|+.|+|+
T Consensus        89 ~-----------~~~~~~~-~vv~nlPy  104 (244)
T 1qam_A           89 K-----------FPKNQSY-KIFGNIPY  104 (244)
T ss_dssp             C-----------CCSSCCC-EEEEECCG
T ss_pred             C-----------cccCCCe-EEEEeCCc
Confidence            3           22 1345 68999994

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.63  E-value=8.8e-08  Score=89.77  Aligned_cols=71  Identities=11%  Similarity=0.032  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .+..+|||+|||.|-.+..++    +..+++|+|+|+.+++.+++++..+| .+..+...|.....            ..
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~~~~~------------~~  166 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDVLCAP------------PA  166 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCTTTSC------------CC
T ss_pred             CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeecccCC------------CC
Confidence            456799999999999986554    57899999999999999999999998 46788888987652            34


Q ss_pred             cCccEEEE
Q psy17793        164 ESFDRILL  171 (397)
Q Consensus       164 ~~fD~Il~  171 (397)
                      +.||+||+
T Consensus       167 ~~~DvvLl  174 (253)
T 3frh_A          167 EAGDLALI  174 (253)
T ss_dssp             CBCSEEEE
T ss_pred             CCcchHHH
Confidence            68999987

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.63  E-value=3.5e-08  Score=95.15  Aligned_cols=99  Identities=13%  Similarity=0.122  Sum_probs=68.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE-EcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH-VYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~-~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      +|.+|||+|||||++|..+++.  +.++|+|+|+++.+++.+.++    . .++... ..|+..+...        .++.
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aVDvs~~mL~~a~r~----~-~rv~~~~~~ni~~l~~~--------~l~~  149 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN--GAKLVYAVDVGTNQLVWKLRQ----D-DRVRSMEQYNFRYAEPV--------DFTE  149 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSSSCSCHHHHT----C-TTEEEECSCCGGGCCGG--------GCTT
T ss_pred             cccEEEecCCCccHHHHHHHhC--CCCEEEEEECCHHHHHHHHHh----C-cccceecccCceecchh--------hCCC
Confidence            5789999999999999988885  457999999999998874332    1 233222 2344333110        1222


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      ..||.|++|...               .++           ..+|.+           +.++|||||+++..
T Consensus       150 ~~fD~v~~d~sf---------------~sl-----------~~vL~e-----------~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          150 GLPSFASIDVSF---------------ISL-----------NLILPA-----------LAKILVDGGQVVAL  184 (291)
T ss_dssp             CCCSEEEECCSS---------------SCG-----------GGTHHH-----------HHHHSCTTCEEEEE
T ss_pred             CCCCEEEEEeeH---------------hhH-----------HHHHHH-----------HHHHcCcCCEEEEE
Confidence            359999998752               122           445666           88999999999987

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.62  E-value=3.3e-08  Score=93.58  Aligned_cols=104  Identities=19%  Similarity=0.130  Sum_probs=79.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .+..+|||+|||.|-.++.++.. .+..+++|+|+|+.+++.+++|+..+|+. .++...|...-.            ..
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~-~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~~------------p~  196 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGL-PAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLEDR------------LD  196 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTC-CTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTSC------------CC
T ss_pred             CCCceeeeeccCccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeecccC------------CC
Confidence            33569999999999999877664 36789999999999999999999999986 788888876542            45


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY  234 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy  234 (397)
                      +.||+||+                      .+.+..+...|+..+-+           .++.|+++|.+|-
T Consensus       197 ~~~DvaL~----------------------lkti~~Le~q~kg~g~~-----------ll~aL~~~~vvVS  234 (281)
T 3lcv_B          197 EPADVTLL----------------------LKTLPCLETQQRGSGWE-----------VIDIVNSPNIVVT  234 (281)
T ss_dssp             SCCSEEEE----------------------TTCHHHHHHHSTTHHHH-----------HHHHSSCSEEEEE
T ss_pred             CCcchHHH----------------------HHHHHHhhhhhhHHHHH-----------HHHHhCCCCEEEe
Confidence            78999997                      24444444444433336           7778899987753

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.61  E-value=2.1e-07  Score=91.24  Aligned_cols=111  Identities=14%  Similarity=0.089  Sum_probs=78.5

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ..++..++.+|||+|||+|..+..++... +..+++++|+ +..+.  ++++++.+.. +|++..+|+...         
T Consensus       178 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~---------  244 (348)
T 3lst_A          178 RAGDFPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLRE---------  244 (348)
T ss_dssp             HHSCCCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTC---------
T ss_pred             HhCCccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCC---------
Confidence            34456778899999999999999999875 4678999999 44444  4444444443 599999998632         


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                         .+  .||+|++-          .....|.    ....       .++|++           +.+.|||||+|+....
T Consensus       245 ---~p--~~D~v~~~----------~vlh~~~----d~~~-------~~~L~~-----------~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          245 ---VP--HADVHVLK----------RILHNWG----DEDS-------VRILTN-----------CRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             ---CC--CCSEEEEE----------SCGGGSC----HHHH-------HHHHHH-----------HHHTCCTTCEEEEEEC
T ss_pred             ---CC--CCcEEEEe----------hhccCCC----HHHH-------HHHHHH-----------HHHhcCCCCEEEEEEe
Confidence               23  79999972          1222333    2211       567888           9999999999998765


Q ss_pred             CC
Q psy17793        238 SL  239 (397)
Q Consensus       238 S~  239 (397)
                      ..
T Consensus       288 ~~  289 (348)
T 3lst_A          288 VV  289 (348)
T ss_dssp             CB
T ss_pred             cc
Confidence            43

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.60  E-value=1.2e-07  Score=90.88  Aligned_cols=89  Identities=12%  Similarity=0.172  Sum_probs=68.9

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMND-TGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS  152 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~-~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~  152 (397)
                      ...++..+++.++++|||+|||+|..|..++..... .++|+|+|+|+.+++.++++.    ..+++++++|+.++.-. 
T Consensus        31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~~~-  105 (279)
T 3uzu_A           31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFDFG-  105 (279)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCCGG-
T ss_pred             HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCChh-
Confidence            344566778889999999999999999999987533 356999999999999999983    35799999999887411 


Q ss_pred             hhhHHHhhhcc-c--CccEEEEcCC
Q psy17793        153 QIDIERMKLQK-E--SFDRILLDAP  174 (397)
Q Consensus       153 ~~d~~~~~~~~-~--~fD~Il~DpP  174 (397)
                             .+.. .  ..+.|+.|+|
T Consensus       106 -------~~~~~~~~~~~~vv~NlP  123 (279)
T 3uzu_A          106 -------SIARPGDEPSLRIIGNLP  123 (279)
T ss_dssp             -------GGSCSSSSCCEEEEEECC
T ss_pred             -------HhcccccCCceEEEEccC
Confidence                   0111 1  3458999999

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.59  E-value=1.4e-07  Score=86.17  Aligned_cols=60  Identities=8%  Similarity=0.098  Sum_probs=50.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEEccccc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL---SSIQTHVYDSTR  147 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~---~~v~~~~~D~~~  147 (397)
                      .+.++||++|+  |.-|+.+|.+ . +++|+++|.+++..+.+++++++.|+   ++|+++.+|+..
T Consensus        29 ~~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~   91 (202)
T 3cvo_A           29 EEAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGP   91 (202)
T ss_dssp             HHCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSS
T ss_pred             hCCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchh
Confidence            35679999997  6777777763 2 68999999999999999999999995   569999999754

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.52  E-value=6.4e-07  Score=88.27  Aligned_cols=114  Identities=15%  Similarity=0.053  Sum_probs=86.1

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      .++..+..+|+|+|||+|..+..+++.. +..+++..|. +..++.+++++...+.++|++..+|+....          
T Consensus       174 ~~~~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~----------  241 (353)
T 4a6d_A          174 AFDLSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDP----------  241 (353)
T ss_dssp             SSCGGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSC----------
T ss_pred             hcCcccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCC----------
Confidence            3445667899999999999999999985 5678888897 889999998887767778999999987531          


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                         ...+|+|++          ..+...|+    .+..       .++|++           +.+.|+|||+|+....-+
T Consensus       242 ---~~~~D~~~~----------~~vlh~~~----d~~~-------~~iL~~-----------~~~al~pgg~lli~e~~~  286 (353)
T 4a6d_A          242 ---LPEADLYIL----------ARVLHDWA----DGKC-------SHLLER-----------IYHTCKPGGGILVIESLL  286 (353)
T ss_dssp             ---CCCCSEEEE----------ESSGGGSC----HHHH-------HHHHHH-----------HHHHCCTTCEEEEEECCC
T ss_pred             ---CCCceEEEe----------eeecccCC----HHHH-------HHHHHH-----------HHhhCCCCCEEEEEEeee
Confidence               235799987          23344455    3332       567888           999999999998876544


Q ss_pred             C
Q psy17793        240 S  240 (397)
Q Consensus       240 ~  240 (397)
                      .
T Consensus       287 ~  287 (353)
T 4a6d_A          287 D  287 (353)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.50  E-value=4.6e-08  Score=91.87  Aligned_cols=127  Identities=16%  Similarity=0.070  Sum_probs=75.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHH--cCC-CcEEEEEe--CCHHHHHHHHHHHHHhCCCcEEEEEc-ccccccccchhhH
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALL--MND-TGTLIALD--KSKPRVTKLEETIKKLQLSSIQTHVY-DSTRINTSSQIDI  156 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~--~~~-~~~V~avD--~s~~rl~~l~~n~~~~g~~~v~~~~~-D~~~~~~~~~~d~  156 (397)
                      ++||.+|||+|||||+++..++.+  ++. .|.|+|+|  +.|-..       ...|+.-+.+..+ |++.+        
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------~~~Gv~~i~~~~G~Df~~~--------  135 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------QSYGWNIVTMKSGVDVFYK--------  135 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------CSTTGGGEEEECSCCGGGS--------
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-------cCCCceEEEeeccCCccCC--------
Confidence            578999999999999999988887  422 46778877  222110       0023333556556 88764        


Q ss_pred             HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc-EEEEE
Q psy17793        157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG-ILVYC  235 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG-~lvys  235 (397)
                           ....+|+||+|.-=+ +|.              ..+++.     +.+. ||.|       |.++|+||| .++.-
T Consensus       136 -----~~~~~DvVLSDMAPn-SG~--------------~~vD~~-----Rs~~-aL~~-------A~~~Lk~gG~~FvvK  182 (269)
T 2px2_A          136 -----PSEISDTLLCDIGES-SPS--------------AEIEEQ-----RTLR-ILEM-------VSDWLSRGPKEFCIK  182 (269)
T ss_dssp             -----CCCCCSEEEECCCCC-CSC--------------HHHHHH-----HHHH-HHHH-------HHHHHTTCCSEEEEE
T ss_pred             -----CCCCCCEEEeCCCCC-CCc--------------cHHHHH-----HHHH-HHHH-------HHHHhhcCCcEEEEE
Confidence                 235799999997423 332              222221     1111 4444       888999999 77765


Q ss_pred             ecCCCc--cccHHHHHHHHHHCCCcE
Q psy17793        236 TCSLSV--EENEAVIAWILHRHPEVE  259 (397)
Q Consensus       236 TCS~~~--eEnE~vV~~~L~~~~~~~  259 (397)
                        .+.+  ++-.+.++.+-+.+....
T Consensus       183 --VFqg~~~~~~~~l~~lk~~F~~vk  206 (269)
T 2px2_A          183 --ILCPYMPKVIEKLESLQRRFGGGL  206 (269)
T ss_dssp             --ESCTTSHHHHHHHHHHHHHHCCEE
T ss_pred             --ECCCCchHHHHHHHHHHHHcCCEE
Confidence              3443  222223445555554433

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.48  E-value=3.8e-08  Score=91.66  Aligned_cols=44  Identities=16%  Similarity=0.153  Sum_probs=37.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET  129 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n  129 (397)
                      .+|.+|||+|||+|..+..+++.  +..+|+|+|+|+.+++.++++
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~--g~~~V~gvDis~~ml~~a~~~   79 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQN--GAKLVYALDVGTNQLAWKIRS   79 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSCCCCCHHHHT
T ss_pred             CCCCEEEEEccCCCHHHHHHHhc--CCCEEEEEcCCHHHHHHHHHh
Confidence            35779999999999999999885  345999999999999986654

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.47  E-value=2.2e-07  Score=87.42  Aligned_cols=91  Identities=12%  Similarity=0.183  Sum_probs=69.5

Q ss_pred             EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793         69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI  148 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~  148 (397)
                      ........+...+++.++++|||+|||+|..|..++..  +..+|+|+|+|+.+++.++++    +..+++++++|+.++
T Consensus        15 ~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~   88 (249)
T 3ftd_A           15 VSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI----GDERLEVINEDASKF   88 (249)
T ss_dssp             ECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTC
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhC
Confidence            33333444556778888999999999999999988874  357999999999999999887    345799999999876


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                      ...        ... ..| .|+.|+|+
T Consensus        89 ~~~--------~~~-~~~-~vv~NlPy  105 (249)
T 3ftd_A           89 PFC--------SLG-KEL-KVVGNLPY  105 (249)
T ss_dssp             CGG--------GSC-SSE-EEEEECCT
T ss_pred             Chh--------Hcc-CCc-EEEEECch
Confidence            311        011 234 89999995

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.46  E-value=1.7e-07  Score=88.38  Aligned_cols=91  Identities=10%  Similarity=0.053  Sum_probs=67.3

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ  153 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~  153 (397)
                      ...++..+++.++++|||+|||+|..|. ++.  ....+|+|+|+|+.+++.++++++..  .+++++++|+..+...  
T Consensus        10 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~--   82 (252)
T 1qyr_A           10 IDSIVSAINPQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFG--   82 (252)
T ss_dssp             HHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHH--
T ss_pred             HHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHH--
Confidence            3445566788899999999999999999 654  22233999999999999999887653  4799999999876311  


Q ss_pred             hhHHHhhhc-ccCccEEEEcCCCC
Q psy17793        154 IDIERMKLQ-KESFDRILLDAPCS  176 (397)
Q Consensus       154 ~d~~~~~~~-~~~fD~Il~DpPCS  176 (397)
                       +.    +. .+..|.|+.|+|+.
T Consensus        83 -~~----~~~~~~~~~vvsNlPY~  101 (252)
T 1qyr_A           83 -EL----AEKMGQPLRVFGNLPYN  101 (252)
T ss_dssp             -HH----HHHHTSCEEEEEECCTT
T ss_pred             -Hh----hcccCCceEEEECCCCC
Confidence             00    10 12468999999953

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.40  E-value=1.2e-06  Score=82.98  Aligned_cols=134  Identities=14%  Similarity=0.147  Sum_probs=86.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHc------CC-----CcEEEEEeCCH---HHHH-----------HHHHHHHHh----
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLM------ND-----TGTLIALDKSK---PRVT-----------KLEETIKKL----  133 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~------~~-----~~~V~avD~s~---~rl~-----------~l~~n~~~~----  133 (397)
                      .+++.+|||+|+|+|.-++.+++..      .+     ..+++++|..+   +.++           .++++++.+    
T Consensus        58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~  137 (257)
T 2qy6_A           58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL  137 (257)
T ss_dssp             SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence            3456799999999999998877653      33     25899999987   4444           455555541    


Q ss_pred             ----------CCCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcC--CCCCCCCCcccccccCccchHHHHHHHH
Q psy17793        134 ----------QLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDA--PCSGFGQRPMFYNANSFLNLDKKIKSYA  201 (397)
Q Consensus       134 ----------g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~Dp--PCSg~G~~p~~~~~~s~~~~~~~~~~l~  201 (397)
                                +..+++++.+|+.......      .......||+|++|+  |+.    +|   .-|+            
T Consensus       138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~~~------~~~~~~~~D~iflD~fsp~~----~p---~lw~------------  192 (257)
T 2qy6_A          138 PGCHRLLLDEGRVTLDLWFGDINELISQL------DDSLNQKVDAWFLDGFAPAK----NP---DMWT------------  192 (257)
T ss_dssp             SEEEEEEEC--CEEEEEEESCHHHHGGGS------CGGGTTCEEEEEECSSCTTT----CG---GGCC------------
T ss_pred             cchhheeccCCceEEEEEECcHHHHHhhc------ccccCCeEEEEEECCCCccc----Ch---hhcC------------
Confidence                      2235788999998753210      000113799999998  421    22   1234            


Q ss_pred             HHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEec
Q psy17793        202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       202 ~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                         .++|+.           +.++|||||+|+.-|+.       ..|...|... +|++...
T Consensus       193 ---~~~l~~-----------l~~~L~pGG~l~tysaa-------~~vrr~L~~a-GF~v~~~  232 (257)
T 2qy6_A          193 ---QNLFNA-----------MARLARPGGTLATFTSA-------GFVRRGLQEA-GFTMQKR  232 (257)
T ss_dssp             ---HHHHHH-----------HHHHEEEEEEEEESCCB-------HHHHHHHHHH-TEEEEEE
T ss_pred             ---HHHHHH-----------HHHHcCCCcEEEEEeCC-------HHHHHHHHHC-CCEEEeC
Confidence               455666           88899999999842221       3677777775 6776654

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.36  E-value=1.4e-06  Score=86.21  Aligned_cols=104  Identities=17%  Similarity=0.160  Sum_probs=76.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ..++.+|||+|||+|..+..++... +..+++++|+ +..++.++++      .+|++..+|+...            ++
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~------------~p  260 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF------SGVEHLGGDMFDG------------VP  260 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTTC------------CC
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc------CCCEEEecCCCCC------------CC
Confidence            4567899999999999999999876 4678999999 8887766532      5799999998752            23


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS  240 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~  240 (397)
                      . . |+|++-          .....|.    ....       .++|++           +.+.|||||+|+.....+.
T Consensus       261 ~-~-D~v~~~----------~vlh~~~----~~~~-------~~~l~~-----------~~~~L~pgG~l~i~e~~~~  304 (368)
T 3reo_A          261 K-G-DAIFIK----------WICHDWS----DEHC-------LKLLKN-----------CYAALPDHGKVIVAEYILP  304 (368)
T ss_dssp             C-C-SEEEEE----------SCGGGBC----HHHH-------HHHHHH-----------HHHHSCTTCEEEEEECCCC
T ss_pred             C-C-CEEEEe----------chhhcCC----HHHH-------HHHHHH-----------HHHHcCCCCEEEEEEeccC
Confidence            2 2 999871          2233343    2222       567888           9999999999998866543

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.35  E-value=3.4e-07  Score=86.97  Aligned_cols=133  Identities=13%  Similarity=0.056  Sum_probs=76.6

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ..+++.+|||+|||||+++..++... +...|+|+|+.......... .+..|. ++.....|+...           .+
T Consensus        71 ~l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~-~~~~g~-~ii~~~~~~dv~-----------~l  136 (277)
T 3evf_A           71 YVKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMN-VQSLGW-NIITFKDKTDIH-----------RL  136 (277)
T ss_dssp             SSCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCC-CCBTTG-GGEEEECSCCTT-----------TS
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCcccccc-cCcCCC-CeEEEeccceeh-----------hc
Confidence            35788899999999999998777653 34578888887432000000 011121 344444443211           13


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC-cEEEEEecCCC
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD-GILVYCTCSLS  240 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg-G~lvysTCS~~  240 (397)
                      ..+.||+|++|--=+ +|.              ..++...  +..+|+.           |.++|||| |.+|...-.-.
T Consensus       137 ~~~~~DlVlsD~apn-sG~--------------~~~D~~r--s~~LL~~-----------a~~~LkpG~G~FV~KVf~py  188 (277)
T 3evf_A          137 EPVKCDTLLCDIGES-SSS--------------SVTEGER--TVRVLDT-----------VEKWLACGVDNFCVKVLAPY  188 (277)
T ss_dssp             CCCCCSEEEECCCCC-CSC--------------HHHHHHH--HHHHHHH-----------HHHHHTTCCSEEEEEESCTT
T ss_pred             CCCCccEEEecCccC-cCc--------------hHHHHHH--HHHHHHH-----------HHHHhCCCCCeEEEEecCCC
Confidence            457899999997422 331              2222221  1334666           99999999 99999733222


Q ss_pred             ccccHHHHHHHHHHCC
Q psy17793        241 VEENEAVIAWILHRHP  256 (397)
Q Consensus       241 ~eEnE~vV~~~L~~~~  256 (397)
                      .++..+.+..+-+.+.
T Consensus       189 g~~~~~l~~~lk~~F~  204 (277)
T 3evf_A          189 MPDVLEKLELLQRRFG  204 (277)
T ss_dssp             SHHHHHHHHHHHHHHC
T ss_pred             CccHHHHHHHHHHhcC
Confidence            3444445555555553

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.34  E-value=9.2e-07  Score=92.70  Aligned_cols=75  Identities=16%  Similarity=0.122  Sum_probs=64.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      .+-+|||+|||.|..+..||.+   +..|+|+|.++..++.++..+++.|..+|++.++|+.++..         .+..+
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~---------~~~~~  133 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIA---------ALEEG  133 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHH---------HCCTT
T ss_pred             CCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhh---------hccCC
Confidence            4569999999999999999985   57999999999999999999998887789999999877631         23457


Q ss_pred             CccEEEE
Q psy17793        165 SFDRILL  171 (397)
Q Consensus       165 ~fD~Il~  171 (397)
                      +||+|++
T Consensus       134 ~fD~v~~  140 (569)
T 4azs_A          134 EFDLAIG  140 (569)
T ss_dssp             SCSEEEE
T ss_pred             CccEEEE
Confidence            8999997

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.32  E-value=4.9e-07  Score=86.65  Aligned_cols=132  Identities=11%  Similarity=-0.003  Sum_probs=77.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc-ccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY-DSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~-D~~~~~~~~~~d~~~~~~  161 (397)
                      .++|.+|||+|||||+++..+++.+ +...|+|+|+.......... .+..+.+-+.+... |...             +
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~-~~~~~~~iv~~~~~~di~~-------------l  143 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIH-MQTLGWNIVKFKDKSNVFT-------------M  143 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCTTT-------------S
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEecccccccccc-ccccCCceEEeecCceeee-------------c
Confidence            3578999999999999999888754 34578999996531000000 00111111222211 2221             2


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC-cEEEEEecCCC
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD-GILVYCTCSLS  240 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg-G~lvysTCS~~  240 (397)
                      ..+.+|+|++|.-.+ +|.              ..+..+  .|..||.-           |.++|+|| |.+|.-.-...
T Consensus       144 ~~~~~DlVlsD~APn-sG~--------------~~~D~~--rs~~LL~~-----------A~~~LkpG~G~FV~KvF~~y  195 (300)
T 3eld_A          144 PTEPSDTLLCDIGES-SSN--------------PLVERD--RTMKVLEN-----------FERWKHVNTENFCVKVLAPY  195 (300)
T ss_dssp             CCCCCSEEEECCCCC-CSS--------------HHHHHH--HHHHHHHH-----------HHHHCCTTCCEEEEEESSTT
T ss_pred             CCCCcCEEeecCcCC-CCC--------------HHHHHH--HHHHHHHH-----------HHHHhcCCCCcEEEEecccc
Confidence            456899999998766 552              222222  22344665           89999999 99998733222


Q ss_pred             ccccHHHHHHHHHHCCC
Q psy17793        241 VEENEAVIAWILHRHPE  257 (397)
Q Consensus       241 ~eEnE~vV~~~L~~~~~  257 (397)
                      .++..+.+..+-+.+..
T Consensus       196 G~~~~~ll~~lk~~F~~  212 (300)
T 3eld_A          196 HPDVIEKLERLQLRFGG  212 (300)
T ss_dssp             SHHHHHHHHHHHHHHCC
T ss_pred             CccHHHHHHHHHHhCCc
Confidence            45555555555555543

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.30  E-value=2.2e-06  Score=84.69  Aligned_cols=104  Identities=18%  Similarity=0.211  Sum_probs=76.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++      ..+|++..+|+...            ++
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~------------~p  258 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFKE------------VP  258 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTTC------------CC
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhh------cCCeEEEeCCcCCC------------CC
Confidence            5567899999999999999999876 4578999999 877766553      25799999998752            23


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS  240 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~  240 (397)
                      .+  |+|++          ..+...|.    ....       .++|++           +.+.|||||+|+.....+.
T Consensus       259 ~~--D~v~~----------~~vlh~~~----d~~~-------~~~L~~-----------~~~~L~pgG~l~i~e~~~~  302 (364)
T 3p9c_A          259 SG--DTILM----------KWILHDWS----DQHC-------ATLLKN-----------CYDALPAHGKVVLVQCILP  302 (364)
T ss_dssp             CC--SEEEE----------ESCGGGSC----HHHH-------HHHHHH-----------HHHHSCTTCEEEEEECCBC
T ss_pred             CC--CEEEe----------hHHhccCC----HHHH-------HHHHHH-----------HHHHcCCCCEEEEEEeccC
Confidence            22  99987          12233344    2222       567888           9999999999998765543

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.29  E-value=3e-07  Score=87.55  Aligned_cols=130  Identities=14%  Similarity=0.075  Sum_probs=75.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ++++.+|||+|||||+++..++..+ +...|+++|+.......... .+..|. ++.....+....           .+.
T Consensus        88 Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~-~~~~g~-~ii~~~~~~dv~-----------~l~  153 (282)
T 3gcz_A           88 VKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIM-RTTLGW-NLIRFKDKTDVF-----------NME  153 (282)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCGG-----------GSC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCccccccc-cccCCC-ceEEeeCCcchh-----------hcC
Confidence            5788899999999999998777654 45678999997642111100 001122 222222221111           134


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC--cEEEEEecCCC
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD--GILVYCTCSLS  240 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg--G~lvysTCS~~  240 (397)
                      ...+|+||+|--=+ +|.              ..++...  +..+|+-           |.++||||  |.+|.-.  +.
T Consensus       154 ~~~~DvVLSDmApn-sG~--------------~~~D~~r--s~~LL~~-----------A~~~Lk~g~~G~Fv~Kv--F~  203 (282)
T 3gcz_A          154 VIPGDTLLCDIGES-SPS--------------IAVEEQR--TLRVLNC-----------AKQWLQEGNYTEFCIKV--LC  203 (282)
T ss_dssp             CCCCSEEEECCCCC-CSC--------------HHHHHHH--HHHHHHH-----------HHHHHHHHCCCEEEEEE--SC
T ss_pred             CCCcCEEEecCccC-CCC--------------hHHHHHH--HHHHHHH-----------HHHHcCCCCCCcEEEEE--ec
Confidence            57899999996422 332              2222221  2334555           88999999  9999873  34


Q ss_pred             --ccccHHHHHHHHHHCC
Q psy17793        241 --VEENEAVIAWILHRHP  256 (397)
Q Consensus       241 --~eEnE~vV~~~L~~~~  256 (397)
                        .++..+.+..+-+.+.
T Consensus       204 pyg~~~~~l~~~lk~~F~  221 (282)
T 3gcz_A          204 PYTPLIMEELSRLQLKHG  221 (282)
T ss_dssp             CCSHHHHHHHHHHHHHHC
T ss_pred             CCCccHHHHHHHHHHhcC
Confidence              3444445555544543

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.28  E-value=2.2e-06  Score=82.15  Aligned_cols=125  Identities=7%  Similarity=0.037  Sum_probs=91.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcC----CCcEEEEEeCCH--------------------------HHHHHHHHHHHHhCC
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMN----DTGTLIALDKSK--------------------------PRVTKLEETIKKLQL  135 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~----~~~~V~avD~s~--------------------------~rl~~l~~n~~~~g~  135 (397)
                      ...||++|++.|.-++.+|..+.    ..++|+++|...                          .+++.+++|+++.|+
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl  186 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL  186 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence            44899999999999999988763    367899999642                          157789999999998


Q ss_pred             --CcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhh
Q psy17793        136 --SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYR  213 (397)
Q Consensus       136 --~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~  213 (397)
                        ++|+++.+|+.+....         ...++||.|.+|+-                  .....       ...|+.   
T Consensus       187 ~~~~I~li~Gda~etL~~---------~~~~~~d~vfIDaD------------------~y~~~-------~~~Le~---  229 (282)
T 2wk1_A          187 LDEQVRFLPGWFKDTLPT---------APIDTLAVLRMDGD------------------LYEST-------WDTLTN---  229 (282)
T ss_dssp             CSTTEEEEESCHHHHSTT---------CCCCCEEEEEECCC------------------SHHHH-------HHHHHH---
T ss_pred             CcCceEEEEeCHHHHHhh---------CCCCCEEEEEEcCC------------------ccccH-------HHHHHH---
Confidence              6799999999765422         33468999999873                  01111       345666   


Q ss_pred             hhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCC
Q psy17793        214 FVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHP  256 (397)
Q Consensus       214 f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~  256 (397)
                              ..++|+|||.|+.-.....+. ....+..++++++
T Consensus       230 --------~~p~L~pGGiIv~DD~~~~~G-~~~Av~Ef~~~~~  263 (282)
T 2wk1_A          230 --------LYPKVSVGGYVIVDDYMMCPP-CKDAVDEYRAKFD  263 (282)
T ss_dssp             --------HGGGEEEEEEEEESSCTTCHH-HHHHHHHHHHHTT
T ss_pred             --------HHhhcCCCEEEEEcCCCCCHH-HHHHHHHHHHhcC
Confidence                    889999999999876533233 3446667777764

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.25  E-value=2.3e-06  Score=84.56  Aligned_cols=102  Identities=18%  Similarity=0.131  Sum_probs=75.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ..++.+|||+|||+|..+..++... +..+++++|+ +.+++.+++      ..+|++..+|+...            ++
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~------------~~  266 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFAS------------VP  266 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTTC------------CC
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCcccC------------CC
Confidence            4567899999999999999999875 4578999999 888876654      25699999998652            22


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                       . ||+|++.          .....+.    ...       ..++|++           +.+.|||||+|+.....
T Consensus       267 -~-~D~v~~~----------~~lh~~~----d~~-------~~~~l~~-----------~~~~L~pgG~l~i~e~~  308 (372)
T 1fp1_D          267 -Q-GDAMILK----------AVCHNWS----DEK-------CIEFLSN-----------CHKALSPNGKVIIVEFI  308 (372)
T ss_dssp             -C-EEEEEEE----------SSGGGSC----HHH-------HHHHHHH-----------HHHHEEEEEEEEEEEEE
T ss_pred             -C-CCEEEEe----------cccccCC----HHH-------HHHHHHH-----------HHHhcCCCCEEEEEEec
Confidence             2 8999972          1222233    111       1467888           99999999999987543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.22  E-value=3.3e-06  Score=82.77  Aligned_cols=103  Identities=15%  Similarity=0.158  Sum_probs=76.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++      ..++++..+|+...            ++
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~------------~p  245 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSG------SNNLTYVGGDMFTS------------IP  245 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------BTTEEEEECCTTTC------------CC
T ss_pred             cccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhccc------CCCcEEEeccccCC------------CC
Confidence            4567899999999999999999875 4568999999 988877654      24699999998652            22


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC---CcEEEEEecCC
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK---DGILVYCTCSL  239 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp---gG~lvysTCS~  239 (397)
                        .||+|++-          .....|.    ...       ..++|++           +.+.|||   ||+|+......
T Consensus       246 --~~D~v~~~----------~~lh~~~----d~~-------~~~~l~~-----------~~~~L~p~~~gG~l~i~e~~~  291 (352)
T 1fp2_A          246 --NADAVLLK----------YILHNWT----DKD-------CLRILKK-----------CKEAVTNDGKRGKVTIIDMVI  291 (352)
T ss_dssp             --CCSEEEEE----------SCGGGSC----HHH-------HHHHHHH-----------HHHHHSGGGCCCEEEEEECEE
T ss_pred             --CccEEEee----------hhhccCC----HHH-------HHHHHHH-----------HHHhCCCCCCCcEEEEEEeec
Confidence              39999971          1222333    111       1467888           9999999   99998876543

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.19  E-value=1.5e-05  Score=76.65  Aligned_cols=132  Identities=15%  Similarity=0.153  Sum_probs=90.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEEcccccccccchhhHHHhh
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-----LSSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      .++||=+|.|.|+.+..++..- +..+|+.+|+|+..++.+++-+....     -.+++++.+|+..+...         
T Consensus        84 pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~---------  153 (294)
T 3o4f_A           84 AKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ---------  153 (294)
T ss_dssp             CCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC---------
T ss_pred             CCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh---------
Confidence            4689999999999998877642 44689999999999999998875532     24699999999988643         


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC--
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS--  238 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS--  238 (397)
                       ..++||+|++|.+-- .|.  .. .-.+               ++.++.           +.+.|+|||+++.-+-|  
T Consensus       154 -~~~~yDvIi~D~~dp-~~~--~~-~L~t---------------~eFy~~-----------~~~~L~p~Gv~v~q~~sp~  202 (294)
T 3o4f_A          154 -TSQTFDVIISDCTDP-IGP--GE-SLFT---------------SAFYEG-----------CKRCLNPGGIFVAQNGVCF  202 (294)
T ss_dssp             -SSCCEEEEEESCCCC-CCT--TC-CSSC---------------CHHHHH-----------HHHTEEEEEEEEEEEEESS
T ss_pred             -ccccCCEEEEeCCCc-CCC--ch-hhcC---------------HHHHHH-----------HHHHhCCCCEEEEecCCcc
Confidence             456899999998721 111  00 0011               344455           77899999999875333  


Q ss_pred             CCccccHHHHHHHHHHCCCc
Q psy17793        239 LSVEENEAVIAWILHRHPEV  258 (397)
Q Consensus       239 ~~~eEnE~vV~~~L~~~~~~  258 (397)
                      +++++-..+.+.+-+.++.+
T Consensus       203 ~~~~~~~~~~~~l~~~F~~v  222 (294)
T 3o4f_A          203 LQQEEAIDSHRKLSHYFSDV  222 (294)
T ss_dssp             SCCHHHHHHHHHHHHHCSEE
T ss_pred             cChHHHHHHHHHHHhhCCce
Confidence            34444444445544555543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.14  E-value=2.7e-06  Score=89.92  Aligned_cols=118  Identities=17%  Similarity=0.101  Sum_probs=82.3

Q ss_pred             CCeEEEEcCCCChH---HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhh
Q psy17793         86 GQKVLDMCAAPGNK---LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        86 g~~VLDlcagpG~k---t~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      +..|||+|||+|-.   ++.+++..+...+|+|||.|+. ...+++..+++|..+ |+++.+|++++.            
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~------------  424 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWV------------  424 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCC------------
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceecc------------
Confidence            34799999999988   5555555444457999999984 556777889999876 999999999873            


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC-
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS-  240 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~-  240 (397)
                      .++++|+|+...=             .+++- .+.   +    .+.|..           +-++|||||+++=+.|+++ 
T Consensus       425 LPEKVDIIVSEwM-------------G~fLl-~E~---m----levL~A-----------rdr~LKPgGimiPs~atlyi  472 (637)
T 4gqb_A          425 APEKADIIVSELL-------------GSFAD-NEL---S----PECLDG-----------AQHFLKDDGVSIPGEYTSFL  472 (637)
T ss_dssp             CSSCEEEEECCCC-------------BTTBG-GGC---H----HHHHHH-----------HGGGEEEEEEEESCEEEEEE
T ss_pred             CCcccCEEEEEcC-------------ccccc-ccC---C----HHHHHH-----------HHHhcCCCcEEccccceEEE
Confidence            3478999997432             11110 111   1    235566           7889999999977766644 


Q ss_pred             -ccccHHHH
Q psy17793        241 -VEENEAVI  248 (397)
Q Consensus       241 -~eEnE~vV  248 (397)
                       +-+.+..-
T Consensus       473 api~~~~l~  481 (637)
T 4gqb_A          473 APISSSKLY  481 (637)
T ss_dssp             EEEECHHHH
T ss_pred             EEecCHHHH
Confidence             45555443

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=98.14  E-value=4.1e-06  Score=80.00  Aligned_cols=123  Identities=15%  Similarity=0.105  Sum_probs=77.0

Q ss_pred             cCCCCCCeEEEEcC------CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh
Q psy17793         81 LDVQPGQKVLDMCA------APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI  154 (397)
Q Consensus        81 L~~~~g~~VLDlca------gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~  154 (397)
                      +.+..|++|||+||      +||+.  .+..+.+.++.|+++|+.+--.           ..+ .++.+|.....     
T Consensus       105 ~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s-----------da~-~~IqGD~~~~~-----  165 (344)
T 3r24_A          105 LAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS-----------DAD-STLIGDCATVH-----  165 (344)
T ss_dssp             CCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC-----------SSS-EEEESCGGGEE-----
T ss_pred             EeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc-----------CCC-eEEEccccccc-----
Confidence            34567999999997      99993  3445543336999999976331           123 34889976542     


Q ss_pred             hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793        155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY  234 (397)
Q Consensus       155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy  234 (397)
                             ..++||+||.|.-...+|.. +.....+               ..|.+.|+.|       |.+.|+|||.++.
T Consensus       166 -------~~~k~DLVISDMAPNtTG~~-D~d~~Rs---------------~~L~ElALdf-------A~~~LkpGGsFvV  215 (344)
T 3r24_A          166 -------TANKWDLIISDMYDPRTKHV-TKENDSK---------------EGFFTYLCGF-------IKQKLALGGSIAV  215 (344)
T ss_dssp             -------ESSCEEEEEECCCCTTSCSS-CSCCCCC---------------CTHHHHHHHH-------HHHHEEEEEEEEE
T ss_pred             -------cCCCCCEEEecCCCCcCCcc-ccchhHH---------------HHHHHHHHHH-------HHHhCcCCCEEEE
Confidence                   34789999999876666641 1111111               1122234444       8889999999998


Q ss_pred             EecCCCccccHHHHHHHHHHC
Q psy17793        235 CTCSLSVEENEAVIAWILHRH  255 (397)
Q Consensus       235 sTCS~~~eEnE~vV~~~L~~~  255 (397)
                      -  -+.-+.++ .+..+.+.+
T Consensus       216 K--VFQGsg~~-~L~~lrk~F  233 (344)
T 3r24_A          216 K--ITEHSWNA-DLYKLMGHF  233 (344)
T ss_dssp             E--ECSSSCCH-HHHHHHTTE
T ss_pred             E--EecCCCHH-HHHHHHhhC
Confidence            7  34445544 455555433

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.12  E-value=2.2e-07  Score=81.54  Aligned_cols=93  Identities=18%  Similarity=0.171  Sum_probs=65.5

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhh
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      ++.++|++|||++||.                 +++|+|+.+++.+++++..    ++++..+|+..+..        ..
T Consensus         8 ~g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~--------~~   58 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLLQ--------SA   58 (176)
T ss_dssp             TTCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGG--------GC
T ss_pred             cCCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCcc--------cc
Confidence            4578999999999985                 2389999999999887532    47888999876531        00


Q ss_pred             hcccCccEEEEcCCCCCCCCCccccccc-CccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNAN-SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~-s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      +..++||+|++.--          .... .  +.           .++|++           +.++|||||++++..
T Consensus        59 ~~~~~fD~V~~~~~----------l~~~~~--~~-----------~~~l~~-----------~~r~LkpgG~l~~~~  101 (176)
T 2ld4_A           59 HKESSFDIILSGLV----------PGSTTL--HS-----------AEILAE-----------IARILRPGGCLFLKE  101 (176)
T ss_dssp             CCSSCEEEEEECCS----------TTCCCC--CC-----------HHHHHH-----------HHHHEEEEEEEEEEE
T ss_pred             CCCCCEeEEEECCh----------hhhccc--CH-----------HHHHHH-----------HHHHCCCCEEEEEEc
Confidence            14678999997211          0000 1  11           456777           899999999999853

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.12  E-value=1.2e-05  Score=78.99  Aligned_cols=102  Identities=17%  Similarity=0.184  Sum_probs=74.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..+..++... +..+++++|+ +..++.+++      ..+|++..+|+...            ++ 
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~------------~~-  250 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFKS------------IP-  250 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTTC------------CC-
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc------CCCcEEEeCccCCC------------CC-
Confidence            456899999999999999999875 4568999999 777766553      35699999998652            22 


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC---CcEEEEEecCC
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK---DGILVYCTCSL  239 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp---gG~lvysTCS~  239 (397)
                       .||+|++.-          ....|.    ...       ..++|++           +.+.|||   ||+|+......
T Consensus       251 -~~D~v~~~~----------vlh~~~----d~~-------~~~~l~~-----------~~~~L~p~~~gG~l~i~e~~~  296 (358)
T 1zg3_A          251 -SADAVLLKW----------VLHDWN----DEQ-------SLKILKN-----------SKEAISHKGKDGKVIIIDISI  296 (358)
T ss_dssp             -CCSEEEEES----------CGGGSC----HHH-------HHHHHHH-----------HHHHTGGGGGGCEEEEEECEE
T ss_pred             -CceEEEEcc----------cccCCC----HHH-------HHHHHHH-----------HHHhCCCCCCCcEEEEEEecc
Confidence             499999721          222333    111       1477888           9999999   99998876543

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.04  E-value=9.7e-07  Score=84.35  Aligned_cols=79  Identities=9%  Similarity=-0.046  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      .+..+||+.+|+|..+..+.+   +..+++.+|.++..++.+++|++.  .++++++..|+......       ..-+..
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS---~~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~-------l~~~~~  158 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLR---SQDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNA-------LLPPPE  158 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSC---TTSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHH-------HCSCTT
T ss_pred             cCCCceeEeCCcHHHHHHHcC---CCCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHH-------hcCCCC
Confidence            356799999999999987655   457999999999999999999976  35699999998664311       001234


Q ss_pred             CccEEEEcCCC
Q psy17793        165 SFDRILLDAPC  175 (397)
Q Consensus       165 ~fD~Il~DpPC  175 (397)
                      +||+|++|||+
T Consensus       159 ~fdLVfiDPPY  169 (283)
T 2oo3_A          159 KRGLIFIDPSY  169 (283)
T ss_dssp             SCEEEEECCCC
T ss_pred             CccEEEECCCC
Confidence            69999999995

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.00  E-value=8.3e-06  Score=80.79  Aligned_cols=71  Identities=11%  Similarity=0.173  Sum_probs=54.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      +++|++|||+||+|||+|..++..   +++|+|||..+-     ...+  ....+|+++..|+....           ..
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~l-----~~~l--~~~~~V~~~~~d~~~~~-----------~~  267 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGPM-----AQSL--MDTGQVTWLREDGFKFR-----------PT  267 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSCC-----CHHH--HTTTCEEEECSCTTTCC-----------CC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhhc-----Chhh--ccCCCeEEEeCcccccc-----------CC
Confidence            578999999999999999998884   579999997641     1112  23357999999988763           13


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      ..+||.|++|--
T Consensus       268 ~~~~D~vvsDm~  279 (375)
T 4auk_A          268 RSNISWMVCDMV  279 (375)
T ss_dssp             SSCEEEEEECCS
T ss_pred             CCCcCEEEEcCC
Confidence            367999999875

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.00  E-value=8.7e-06  Score=86.45  Aligned_cols=125  Identities=14%  Similarity=0.019  Sum_probs=82.2

Q ss_pred             CCeEEEEcCCCChHHHHH---HHHcC---------CCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccc
Q psy17793         86 GQKVLDMCAAPGNKLTHI---ALLMN---------DTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSS  152 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~l---A~~~~---------~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~  152 (397)
                      +..|||+|||+|..+...   ++..+         ...+|+|||.|+.+...++.+.. +|..+ |+++.+|++++... 
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp-  487 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGI-  487 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHH-
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhcccc-
Confidence            348999999999997432   22111         23599999999988877776654 78866 99999999887310 


Q ss_pred             hhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE
Q psy17793        153 QIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL  232 (397)
Q Consensus       153 ~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l  232 (397)
                        .   ..-..+++|+|+...-             .+++.        .++..+.|..           +-++|||||++
T Consensus       488 --~---~~~~~ekVDIIVSElm-------------Gsfl~--------nEL~pe~Ld~-----------v~r~Lkp~Gi~  530 (745)
T 3ua3_A          488 --A---KDRGFEQPDIIVSELL-------------GSFGD--------NELSPECLDG-----------VTGFLKPTTIS  530 (745)
T ss_dssp             --H---HHTTCCCCSEEEECCC-------------BTTBG--------GGSHHHHHHT-----------TGGGSCTTCEE
T ss_pred             --c---ccCCCCcccEEEEecc-------------ccccc--------hhccHHHHHH-----------HHHhCCCCcEE
Confidence              0   0001478999998443             11110        1122456777           78999999999


Q ss_pred             EEEecCC--CccccHHHHH
Q psy17793        233 VYCTCSL--SVEENEAVIA  249 (397)
Q Consensus       233 vysTCS~--~~eEnE~vV~  249 (397)
                      +=+.|++  .|-+.+..-.
T Consensus       531 iP~~~t~ylaPi~~~~l~~  549 (745)
T 3ua3_A          531 IPQKYTSYVKPIMSTHIHQ  549 (745)
T ss_dssp             ESCEEEEEEEEEECHHHHH
T ss_pred             ECCccEEEEEEecCHHHHH
Confidence            7666663  3556655433

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.98  E-value=1.9e-05  Score=78.47  Aligned_cols=119  Identities=17%  Similarity=0.209  Sum_probs=79.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC---C-----CcEEEEEcccccccccchhh
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ---L-----SSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g---~-----~~v~~~~~D~~~~~~~~~~d  155 (397)
                      .+..+||=+|.|-|+....+++.  +..+|+.+|+|+..++.+++-+....   .     ++++++..|+..+...    
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh--~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~----  277 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKL--KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKR----  277 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTT--CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHH----
T ss_pred             CCCCeEEEECCCcHHHHHHHHhc--CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHh----
Confidence            34579999999999998887764  45789999999999999998653221   1     2488999999877521    


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                         .....++||+|++|.+-...+..|..        +..     ....+++++.           +.+.|+|||+++.-
T Consensus       278 ---~~~~~~~yDvIIvDl~D~~~s~~p~g--------~a~-----~Lft~eFy~~-----------~~~~L~p~GVlv~Q  330 (381)
T 3c6k_A          278 ---YAKEGREFDYVINDLTAVPISTSPEE--------DST-----WEFLRLILDL-----------SMKVLKQDGKYFTQ  330 (381)
T ss_dssp             ---HHHHTCCEEEEEEECCSSCCCCC------------CH-----HHHHHHHHHH-----------HHHTEEEEEEEEEE
T ss_pred             ---hhhccCceeEEEECCCCCcccCcccC--------cch-----HHHHHHHHHH-----------HHHhcCCCCEEEEe
Confidence               01123579999999752111111100        001     1123666777           88899999999864

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.84  E-value=2.5e-05  Score=72.53  Aligned_cols=77  Identities=18%  Similarity=0.158  Sum_probs=56.3

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc-ccccccccchhhHHHhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY-DSTRINTSSQIDIERMK  160 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~-D~~~~~~~~~~d~~~~~  160 (397)
                      .++++..|||+|||||+++..++... +..+|+|+|+-..--+. -...+.+|.+.|++..+ |+...            
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~-g~~~V~avdvG~~ghe~-P~~~~s~gwn~v~fk~gvDv~~~------------  140 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLK-KVTEVRGYTKGGPGHEE-PVPMSTYGWNIVKLMSGKDVFYL------------  140 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTST-TEEEEEEECCCSTTSCC-CCCCCCTTTTSEEEECSCCGGGC------------
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhc-CCCEEEEEecCCCCccC-cchhhhcCcCceEEEeccceeec------------
Confidence            45789999999999999998777654 45689999996543210 01124567777999988 87554            


Q ss_pred             hcccCccEEEEcC
Q psy17793        161 LQKESFDRILLDA  173 (397)
Q Consensus       161 ~~~~~fD~Il~Dp  173 (397)
                       ...++|.||||-
T Consensus       141 -~~~~~DtllcDI  152 (267)
T 3p8z_A          141 -PPEKCDTLLCDI  152 (267)
T ss_dssp             -CCCCCSEEEECC
T ss_pred             -CCccccEEEEec
Confidence             235799999985

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.80  E-value=6.7e-05  Score=74.69  Aligned_cols=83  Identities=17%  Similarity=0.211  Sum_probs=60.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF  166 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f  166 (397)
                      .+|||++||.|+.+.-+...  +-..|+|+|+++.+++..+.|.     .+..+++.|+.++...   +..........+
T Consensus         3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~---~~~~~~~~~~~~   72 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAE---IIKGFFKNDMPI   72 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHH---HHHHHHCSCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHH---HHHhhcccCCCe
Confidence            47999999999999877664  3456889999999999988774     3456788898876321   100001123579


Q ss_pred             cEEEEcCCCCCCC
Q psy17793        167 DRILLDAPCSGFG  179 (397)
Q Consensus       167 D~Il~DpPCSg~G  179 (397)
                      |+|+.+|||-+..
T Consensus        73 D~i~ggpPCQ~fS   85 (376)
T 3g7u_A           73 DGIIGGPPCQGFS   85 (376)
T ss_dssp             CEEEECCCCCTTC
T ss_pred             eEEEecCCCCCcc
Confidence            9999999997754

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.74  E-value=6.3e-05  Score=71.91  Aligned_cols=131  Identities=13%  Similarity=0.089  Sum_probs=78.8

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc-ccccccccchhhHHHhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY-DSTRINTSSQIDIERMK  160 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~-D~~~~~~~~~~d~~~~~  160 (397)
                      .++++..|||+|||||+++..++... +...|+|+|+-..--+. -...+.+|.+.|.+... |+..+            
T Consensus        91 ~l~~~~~VlDLGaapGGwsq~~~~~~-gv~~V~avdvG~~~he~-P~~~~ql~w~lV~~~~~~Dv~~l------------  156 (321)
T 3lkz_A           91 FLEPVGKVIDLGCGRGGWCYYMATQK-RVQEVRGYTKGGPGHEE-PQLVQSYGWNIVTMKSGVDVFYR------------  156 (321)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHTTCT-TEEEEEEECCCSTTSCC-CCCCCBTTGGGEEEECSCCTTSS------------
T ss_pred             CCCCCCEEEEeCCCCCcHHHHHHhhc-CCCEEEEEEcCCCCccC-cchhhhcCCcceEEEeccCHhhC------------
Confidence            35788899999999999998777653 45589999997652100 00012344445777776 77655            


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC-cEEEEEecCC
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD-GILVYCTCSL  239 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg-G~lvysTCS~  239 (397)
                       ....+|.|+||.- -.+|. |.          -+....     .+.|+-           +.++|++| |.++.-  -+
T Consensus       157 -~~~~~D~ivcDig-eSs~~-~~----------ve~~Rt-----l~vLel-----------~~~wL~~~~~~f~~K--Vl  205 (321)
T 3lkz_A          157 -PSECCDTLLCDIG-ESSSS-AE----------VEEHRT-----IRVLEM-----------VEDWLHRGPREFCVK--VL  205 (321)
T ss_dssp             -CCCCCSEEEECCC-CCCSC-HH----------HHHHHH-----HHHHHH-----------HHHHHTTCCCEEEEE--ES
T ss_pred             -CCCCCCEEEEECc-cCCCC-hh----------hhhhHH-----HHHHHH-----------HHHHhccCCCcEEEE--Ec
Confidence             2256999999875 22111 00          011111     224554           77788888 766654  23


Q ss_pred             Cc--cccHHHHHHHHHHCCC
Q psy17793        240 SV--EENEAVIAWILHRHPE  257 (397)
Q Consensus       240 ~~--eEnE~vV~~~L~~~~~  257 (397)
                      .|  ++-.+-++.+-.++.+
T Consensus       206 ~pY~~~v~e~l~~lq~~fgg  225 (321)
T 3lkz_A          206 CPYMPKVIEKMELLQRRYGG  225 (321)
T ss_dssp             CTTSHHHHHHHHHHHHHHCC
T ss_pred             CCCChHHHHHHHHHHHHhCC
Confidence            34  4444456666666654

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.65  E-value=5.4e-05  Score=74.33  Aligned_cols=80  Identities=19%  Similarity=0.252  Sum_probs=55.5

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF  166 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f  166 (397)
                      .+|||++||.|+.+..+...-.....|+++|+++.+++..+.|..     +..++++|+.++...        .+....+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~--------~~~~~~~   69 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLE--------EFDRLSF   69 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHH--------HHHHHCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHh--------HcCcCCc
Confidence            479999999999998877641012379999999999999998863     334677888776311        1111269


Q ss_pred             cEEEEcCCCCCCC
Q psy17793        167 DRILLDAPCSGFG  179 (397)
Q Consensus       167 D~Il~DpPCSg~G  179 (397)
                      |+|+.+|||-+..
T Consensus        70 D~l~~gpPCq~fS   82 (343)
T 1g55_A           70 DMILMSPPCQPFT   82 (343)
T ss_dssp             SEEEECCC-----
T ss_pred             CEEEEcCCCcchh
Confidence            9999999997654

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.62  E-value=0.00012  Score=71.57  Aligned_cols=75  Identities=17%  Similarity=0.202  Sum_probs=57.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES  165 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~  165 (397)
                      +-+|+|++||.|+.+..+...  +-..|+++|+++.+++..+.|.....       ..|..++...          ....
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~-------~~Di~~~~~~----------~~~~   71 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP-------EGDITQVNEK----------TIPD   71 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC-------BSCGGGSCGG----------GSCC
T ss_pred             CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC-------cCCHHHcCHh----------hCCC
Confidence            458999999999999877663  45578999999999999999864321       5787766321          1135


Q ss_pred             ccEEEEcCCCCCCC
Q psy17793        166 FDRILLDAPCSGFG  179 (397)
Q Consensus       166 fD~Il~DpPCSg~G  179 (397)
                      +|+|+.+|||-+..
T Consensus        72 ~D~l~~gpPCQ~fS   85 (327)
T 2c7p_A           72 HDILCAGFPCQAFS   85 (327)
T ss_dssp             CSEEEEECCCTTTC
T ss_pred             CCEEEECCCCCCcc
Confidence            99999999997754

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.15  E-value=0.00091  Score=63.98  Aligned_cols=48  Identities=19%  Similarity=0.142  Sum_probs=41.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ  134 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g  134 (397)
                      .+|+.|||.+||+|..+..++.+   +.+++++|+++..++.+++++++..
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            68999999999999988766553   3589999999999999999998864

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.00  E-value=0.0017  Score=65.09  Aligned_cols=64  Identities=14%  Similarity=0.277  Sum_probs=52.7

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHH-HHcCCCcEEEEEeCCHHHHHHHHHHHHH---hCC-CcEEEEEccc
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIA-LLMNDTGTLIALDKSKPRVTKLEETIKK---LQL-SSIQTHVYDS  145 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA-~~~~~~~~V~avD~s~~rl~~l~~n~~~---~g~-~~v~~~~~D~  145 (397)
                      .+++++.|+|+||..|..|..++ ...++.++|+|+|.++..++.+++|++.   .+. .+++++..-+
T Consensus       223 ~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al  291 (409)
T 2py6_A          223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA  291 (409)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred             ccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence            45789999999999999999888 4444448999999999999999999998   346 6777765443

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=96.94  E-value=0.0057  Score=59.00  Aligned_cols=130  Identities=14%  Similarity=0.124  Sum_probs=79.0

Q ss_pred             CeEEEEcCCCChHHHHHH---HHcCCCc--EEEEEeCCHH--------HHHHHHH-HHHHhC---CCc--EEEEEccccc
Q psy17793         87 QKVLDMCAAPGNKLTHIA---LLMNDTG--TLIALDKSKP--------RVTKLEE-TIKKLQ---LSS--IQTHVYDSTR  147 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA---~~~~~~~--~V~avD~s~~--------rl~~l~~-n~~~~g---~~~--v~~~~~D~~~  147 (397)
                      -+|||+|-|+|.-++...   ...++..  +.+++|..+-        -+..+.+ .+.+..   -.+  +.+..+|+..
T Consensus        98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~  177 (308)
T 3vyw_A           98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK  177 (308)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred             cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence            479999999998654322   2223444  4577776431        1222222 222221   123  4567788876


Q ss_pred             ccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793        148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK  227 (397)
Q Consensus       148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk  227 (397)
                      ....         +....||+|++|+  .+-.++|++   |+               .++++.           ..++++
T Consensus       178 ~l~~---------l~~~~~Da~flDg--FsP~kNPeL---Ws---------------~e~f~~-----------l~~~~~  217 (308)
T 3vyw_A          178 RIKE---------VENFKADAVFHDA--FSPYKNPEL---WT---------------LDFLSL-----------IKERID  217 (308)
T ss_dssp             HGGG---------CCSCCEEEEEECC--SCTTTSGGG---GS---------------HHHHHH-----------HHTTEE
T ss_pred             HHhh---------hcccceeEEEeCC--CCcccCccc---CC---------------HHHHHH-----------HHHHhC
Confidence            5421         3334799999997  222345553   55               556677           889999


Q ss_pred             CCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecC
Q psy17793        228 KDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTL  264 (397)
Q Consensus       228 pgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~  264 (397)
                      |||+++--||+       ..|++.|+.. +|++....
T Consensus       218 pgg~laTYtaa-------g~VRR~L~~a-GF~V~k~~  246 (308)
T 3vyw_A          218 EKGYWVSYSSS-------LSVRKSLLTL-GFKVGSSR  246 (308)
T ss_dssp             EEEEEEESCCC-------HHHHHHHHHT-TCEEEEEE
T ss_pred             CCcEEEEEeCc-------HHHHHHHHHC-CCEEEecC
Confidence            99998744443       5899999988 68876654

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=96.92  E-value=0.0011  Score=57.15  Aligned_cols=64  Identities=17%  Similarity=0.066  Sum_probs=49.3

Q ss_pred             CCCCeEEEEcCCCC-hHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPG-NKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG-~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .++.+|||+|||+| ..+..|++.  .+..|+|+|+++.+++               +++.|.++....          .
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~--~g~~V~atDInp~Av~---------------~v~dDiF~P~~~----------~   86 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKH--SKVDLVLTDIKPSHGG---------------IVRDDITSPRME----------I   86 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHH--SCCEEEEECSSCSSTT---------------EECCCSSSCCHH----------H
T ss_pred             CCCCcEEEEccCCChHHHHHHHHh--CCCeEEEEECCccccc---------------eEEccCCCCccc----------c
Confidence            45679999999999 588888874  3467999999998876               777888764210          1


Q ss_pred             ccCccEE-EEcCC
Q psy17793        163 KESFDRI-LLDAP  174 (397)
Q Consensus       163 ~~~fD~I-l~DpP  174 (397)
                      -+.||+| ..+||
T Consensus        87 Y~~~DLIYsirPP   99 (153)
T 2k4m_A           87 YRGAALIYSIRPP   99 (153)
T ss_dssp             HTTEEEEEEESCC
T ss_pred             cCCcCEEEEcCCC
Confidence            1479999 89999

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.91  E-value=0.0014  Score=63.95  Aligned_cols=77  Identities=16%  Similarity=0.226  Sum_probs=56.4

Q ss_pred             eEEEEcCCCChHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCc
Q psy17793         88 KVLDMCAAPGNKLTHIALLMND-TGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESF  166 (397)
Q Consensus        88 ~VLDlcagpG~kt~~lA~~~~~-~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~f  166 (397)
                      +++|++||.||.+.-+... +- .-.|+|+|+++.+.+..+.|..     +..+...|..++...        .+....+
T Consensus         5 ~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~--------~~~~~~~   70 (333)
T 4h0n_A            5 KILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQ--------VIKKWNV   70 (333)
T ss_dssp             EEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHH--------HHHHTTC
T ss_pred             EEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHH--------HhccCCC
Confidence            7999999999999877654 21 1358899999999999888753     234567888776311        1222369


Q ss_pred             cEEEEcCCCCCC
Q psy17793        167 DRILLDAPCSGF  178 (397)
Q Consensus       167 D~Il~DpPCSg~  178 (397)
                      |+|+.-|||-+.
T Consensus        71 D~l~ggpPCQ~f   82 (333)
T 4h0n_A           71 DTILMSPPCQPF   82 (333)
T ss_dssp             CEEEECCCCCCS
T ss_pred             CEEEecCCCcch
Confidence            999999999765

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.91  E-value=0.0025  Score=61.22  Aligned_cols=82  Identities=16%  Similarity=0.163  Sum_probs=58.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGT-LIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~-V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ..+-+|+|++||.||.+.-+... +-... |+++|+++.+.+..+.|.     .+..+...|.+++...   +   .+ .
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~---~---i~-~   80 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQK---H---IQ-E   80 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHH---H---HH-H
T ss_pred             CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHH---H---hc-c
Confidence            34558999999999999766653 21222 699999999998887764     2345778898877421   1   11 1


Q ss_pred             ccCccEEEEcCCCCCC
Q psy17793        163 KESFDRILLDAPCSGF  178 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~  178 (397)
                      .+.+|+|+..|||-+.
T Consensus        81 ~~~~Dll~ggpPCQ~f   96 (295)
T 2qrv_A           81 WGPFDLVIGGSPCNDL   96 (295)
T ss_dssp             TCCCSEEEECCCCGGG
T ss_pred             cCCcCEEEecCCCccc
Confidence            1469999999999653

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.84  E-value=0.0013  Score=64.08  Aligned_cols=77  Identities=12%  Similarity=0.245  Sum_probs=56.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHcC-CCcEE-EEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMN-DTGTL-IALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~-~~~~V-~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      -+|+|++||.||.+.-+... + +.-.| +|+|+++.+.+..+.|....      ++..|..++...        .+...
T Consensus        11 ~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~~~------~~~~DI~~~~~~--------~i~~~   75 (327)
T 3qv2_A           11 VNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFKEE------VQVKNLDSISIK--------QIESL   75 (327)
T ss_dssp             EEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHCCC------CBCCCTTTCCHH--------HHHHT
T ss_pred             CEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCCCC------cccCChhhcCHH--------HhccC
Confidence            48999999999999776653 1 12356 79999999999999886321      456787766311        12223


Q ss_pred             CccEEEEcCCCCCC
Q psy17793        165 SFDRILLDAPCSGF  178 (397)
Q Consensus       165 ~fD~Il~DpPCSg~  178 (397)
                      .+|+|+.-|||-+.
T Consensus        76 ~~Dil~ggpPCQ~f   89 (327)
T 3qv2_A           76 NCNTWFMSPPCQPY   89 (327)
T ss_dssp             CCCEEEECCCCTTC
T ss_pred             CCCEEEecCCccCc
Confidence            69999999999887

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.82  E-value=0.0019  Score=63.66  Aligned_cols=80  Identities=19%  Similarity=0.050  Sum_probs=59.8

Q ss_pred             CcEEEechhH-HHHHhccCCC------CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         65 SMGILQNLPS-ILAGHYLDVQ------PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        65 g~~~~Qd~~S-~l~~~~L~~~------~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      |.-++-|+.- .-++..++++      +++.|||+|.|+|..|..|++.. ...+|+|+|+|+..+..+++.+ .  ..+
T Consensus        31 GQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~-~~~~vvavE~D~~l~~~L~~~~-~--~~~  106 (353)
T 1i4w_A           31 GFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKY-CPRQYSLLEKRSSLYKFLNAKF-E--GSP  106 (353)
T ss_dssp             GCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHH-CCSEEEEECCCHHHHHHHHHHT-T--TSS
T ss_pred             CcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhC-CCCEEEEEecCHHHHHHHHHhc-c--CCC
Confidence            3334445442 2344455555      36899999999999999999853 2458999999999999998876 2  368


Q ss_pred             EEEEEcccccc
Q psy17793        138 IQTHVYDSTRI  148 (397)
Q Consensus       138 v~~~~~D~~~~  148 (397)
                      ++++.+|+.++
T Consensus       107 l~ii~~D~l~~  117 (353)
T 1i4w_A          107 LQILKRDPYDW  117 (353)
T ss_dssp             CEEECSCTTCH
T ss_pred             EEEEECCccch
Confidence            99999999766

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.74  E-value=0.0017  Score=60.82  Aligned_cols=49  Identities=18%  Similarity=0.278  Sum_probs=39.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL  135 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~  135 (397)
                      .+|+.|||.+||+|..+..++. +  +.+++++|+++..++.+++|++.+++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~-~--gr~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKK-L--GRNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHH-T--TCEEEEEESCHHHHHHHHHHHHC---
T ss_pred             CCCCEEEECCCCCCHHHHHHHH-c--CCeEEEEeCCHHHHHHHHHHHHhccC
Confidence            6899999999999988765544 3  35899999999999999999987764

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.60  E-value=0.0033  Score=60.53  Aligned_cols=73  Identities=14%  Similarity=0.131  Sum_probs=56.0

Q ss_pred             eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCcc
Q psy17793         88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFD  167 (397)
Q Consensus        88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD  167 (397)
                      +|||++||.||.+.-+-..  +--.|.|+|+++.+++..+.|.     . -.++.+|.+++...          .-..+|
T Consensus         2 kvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~-----~-~~~~~~DI~~i~~~----------~~~~~D   63 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH-----S-AKLIKGDISKISSD----------EFPKCD   63 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHC-----C-SEEEESCGGGCCGG----------GSCCCS
T ss_pred             eEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC-----C-CCcccCChhhCCHh----------hCCccc
Confidence            6999999999999766542  3446789999999999988773     2 25678898877421          124689


Q ss_pred             EEEEcCCCCCC
Q psy17793        168 RILLDAPCSGF  178 (397)
Q Consensus       168 ~Il~DpPCSg~  178 (397)
                      +|+.=|||-+.
T Consensus        64 ~l~ggpPCQ~f   74 (331)
T 3ubt_Y           64 GIIGGPPSQSW   74 (331)
T ss_dssp             EEECCCCGGGT
T ss_pred             EEEecCCCCCc
Confidence            99999999764

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.04  E-value=0.021  Score=55.50  Aligned_cols=53  Identities=26%  Similarity=0.276  Sum_probs=39.9

Q ss_pred             ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ..++++|++||-.|+|+ |..++++|..+ +..+|+++|.++++++.++    ++|.+.
T Consensus       166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~  219 (356)
T 1pl8_A          166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAK----EIGADL  219 (356)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HhCCCE
Confidence            34688999999999765 56667777765 3348999999999987764    578764

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.01  E-value=0.0065  Score=57.97  Aligned_cols=79  Identities=14%  Similarity=0.163  Sum_probs=45.9

Q ss_pred             CcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhh
Q psy17793        136 SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFV  215 (397)
Q Consensus       136 ~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~  215 (397)
                      ..++++++|+......         +..++||+|++|||+..............  +. .....+......++..     
T Consensus        20 ~~~~i~~gD~~~~l~~---------l~~~s~DlIvtdPPY~~~~~y~~~~~~~~--~~-~~~~~~l~~l~~~~~~-----   82 (297)
T 2zig_A           20 GVHRLHVGDAREVLAS---------FPEASVHLVVTSPPYWTLKRYEDTPGQLG--HI-EDYEAFLDELDRVWRE-----   82 (297)
T ss_dssp             -CEEEEESCHHHHHTT---------SCTTCEEEEEECCCCCCCC-------CCH--HH-HHHHHHHHHHHHHHHH-----
T ss_pred             cCCEEEECcHHHHHhh---------CCCCceeEEEECCCCCCccccCCChhhhc--cc-ccHHHHHHHHHHHHHH-----
Confidence            4578999999875321         34578999999999854321000000000  01 1112222222567777     


Q ss_pred             ccccccccccccCCcEEEEEec
Q psy17793        216 SLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       216 ~~~~~~a~~lLkpgG~lvysTC  237 (397)
                            +.++|||||.+++...
T Consensus        83 ------~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           83 ------VFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             ------HHHHEEEEEEEEEEEC
T ss_pred             ------HHHHcCCCcEEEEEEC
Confidence                  9999999999987643

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=95.77  E-value=0.011  Score=60.63  Aligned_cols=89  Identities=18%  Similarity=0.194  Sum_probs=56.9

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh---hH---HHhh
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI---DI---ERMK  160 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~---d~---~~~~  160 (397)
                      -+++|+|||.||.+.-+...  +--.|+|+|+++.+++..+.|...  ..+..+++.|...+......   +.   ....
T Consensus        89 ~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~  164 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEHIR  164 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred             ceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhhhh
Confidence            48999999999999766542  333589999999999988877421  12334567888765311000   00   0000


Q ss_pred             hcccCccEEEEcCCCCCCC
Q psy17793        161 LQKESFDRILLDAPCSGFG  179 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G  179 (397)
                      .....+|+|+.-|||-+..
T Consensus       165 ~~~~~~Dvl~gGpPCQ~FS  183 (482)
T 3me5_A          165 QHIPEHDVLLAGFPCQPFS  183 (482)
T ss_dssp             HHSCCCSEEEEECCCCCC-
T ss_pred             hcCCCCCEEEecCCCcchh
Confidence            1124689999999997653

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.72  E-value=0.018  Score=56.34  Aligned_cols=53  Identities=21%  Similarity=0.252  Sum_probs=40.4

Q ss_pred             ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ..++++|++||-.|||+ |..++++|..++ ..+|+++|.++++++.++    ++|.+.
T Consensus       185 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~  238 (371)
T 1f8f_A          185 ALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAK----QLGATH  238 (371)
T ss_dssp             TTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHH----HHTCSE
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCCE
Confidence            45678999999999866 666777777653 337999999999988764    467653

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.63  E-value=0.022  Score=54.98  Aligned_cols=51  Identities=22%  Similarity=0.213  Sum_probs=40.7

Q ss_pred             cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ..+++|++||-.|||+ |..++++|..+  +.+|+++|.++++++.++    ++|.+.
T Consensus       162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~----~lGa~~  213 (340)
T 3s2e_A          162 TDTRPGQWVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLAR----RLGAEV  213 (340)
T ss_dssp             TTCCTTSEEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHH----HTTCSE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHH----HcCCCE
Confidence            4678999999999876 77788888875  359999999999988764    578654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.55  E-value=0.029  Score=54.19  Aligned_cols=72  Identities=17%  Similarity=0.129  Sum_probs=46.4

Q ss_pred             cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhc
Q psy17793        137 SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS  216 (397)
Q Consensus       137 ~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~  216 (397)
                      ...++++|......         .+..++||+|++|||+......     .+.  +  .....+...-..+|..      
T Consensus        14 ~~~ii~gD~~~~l~---------~l~~~svDlI~tDPPY~~~~~~-----~y~--~--~~~~~~~~~l~~~l~~------   69 (323)
T 1boo_A           14 NGSMYIGDSLELLE---------SFPEESISLVMTSPPFALQRKK-----EYG--N--LEQHEYVDWFLSFAKV------   69 (323)
T ss_dssp             SEEEEESCHHHHGG---------GSCSSCEEEEEECCCCSSSCSC-----SSC--S--CHHHHHHHHHHHHHHH------
T ss_pred             CceEEeCcHHHHHh---------hCCCCCeeEEEECCCCCCCccc-----ccC--C--cCHHHHHHHHHHHHHH------
Confidence            47888999876532         1345789999999998543210     111  1  1122333333677777      


Q ss_pred             cccccccccccCCcEEEEEec
Q psy17793        217 LFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       217 ~~~~~a~~lLkpgG~lvysTC  237 (397)
                           +.++||+||.+++...
T Consensus        70 -----~~rvLk~~G~i~i~~~   85 (323)
T 1boo_A           70 -----VNKKLKPDGSFVVDFG   85 (323)
T ss_dssp             -----HHHHEEEEEEEEEEEC
T ss_pred             -----HHHHCcCCcEEEEEEC
Confidence                 8999999999988754

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=95.53  E-value=0.031  Score=53.93  Aligned_cols=51  Identities=16%  Similarity=0.224  Sum_probs=40.1

Q ss_pred             CCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         82 DVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        82 ~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      .+++|++||-.|+|+ |..++++|..+ +..+|+++|.++++++.++    ++|.+.
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~-g~~~Vi~~~~~~~~~~~~~----~lGa~~  219 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAV-SAARVIAVDLDDDRLALAR----EVGADA  219 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHH-CCCEEEEEESCHHHHHHHH----HTTCSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCCCE
Confidence            578999999998865 66677777765 3569999999999988764    578764

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.50  E-value=0.011  Score=58.45  Aligned_cols=50  Identities=26%  Similarity=0.327  Sum_probs=39.7

Q ss_pred             cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q psy17793         81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL  135 (397)
Q Consensus        81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~  135 (397)
                      .++++|++||-.|||+ |..++++|..++ ..+|+++|.++++++.++    ++|.
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa  231 (398)
T 2dph_A          181 AGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLS----DAGF  231 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHH----TTTC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCC
Confidence            4678999999999876 677778888753 348999999999987764    4676

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.32  E-value=0.068  Score=51.73  Aligned_cols=52  Identities=21%  Similarity=0.161  Sum_probs=38.8

Q ss_pred             ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ..++++|++||-.|+|+ |..++++|..+  +.+|+++|.++++++.++    ++|.+.
T Consensus       163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~----~lGa~~  215 (352)
T 1e3j_A          163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAK----NCGADV  215 (352)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH----HTTCSE
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHH----HhCCCE
Confidence            34678999999999754 55566777664  346999999999988764    578763

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=95.32  E-value=0.028  Score=55.71  Aligned_cols=46  Identities=15%  Similarity=0.126  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc--------------CCCcEEEEEeCCHHHHHHHHHHHH
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM--------------NDTGTLIALDKSKPRVTKLEETIK  131 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~--------------~~~~~V~avD~s~~rl~~l~~n~~  131 (397)
                      ..+|+|+|||+|..|+.++..+              .+..+|+.+|.-..-...+=+.+.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~  112 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLP  112 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSC
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhh
Confidence            4689999999999998874422              134677777877666655544443

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.24  E-value=0.047  Score=53.33  Aligned_cols=53  Identities=15%  Similarity=0.128  Sum_probs=39.3

Q ss_pred             ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...+++|++||-.|+|+ |..++++|..++ ..+|+++|.++++++.++    ++|.+.
T Consensus       186 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~  239 (373)
T 1p0f_A          186 TAKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAI----ELGATE  239 (373)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCcE
Confidence            34678999999998754 555667777653 348999999999987764    578754

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.22  E-value=0.03  Score=54.83  Aligned_cols=54  Identities=15%  Similarity=0.173  Sum_probs=40.3

Q ss_pred             hccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         79 HYLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ....+++|++||=.|+|+ |..++++|..+ +..+|+++|.++++++.++    ++|.+.
T Consensus       176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~  230 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGGGVIGLLTVQLARLA-GATTVILSTRQATKRRLAE----EVGATA  230 (370)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHH----HHTCSE
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HcCCCE
Confidence            345688999999998865 55666777765 3348999999999987665    468754

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=95.21  E-value=0.038  Score=58.71  Aligned_cols=133  Identities=11%  Similarity=0.085  Sum_probs=79.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcC-----------CCcEEEEEeCCHHHHHHHHH--------------HHHHh-----C
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMN-----------DTGTLIALDKSKPRVTKLEE--------------TIKKL-----Q  134 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~-----------~~~~V~avD~s~~rl~~l~~--------------n~~~~-----g  134 (397)
                      +.-+|+|+|.|+|.-.+.+.+...           ...+++++|..|-..+.+++              .++.+     |
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            345899999999998876665421           12579999995544444433              22222     2


Q ss_pred             C-----C----cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHH
Q psy17793        135 L-----S----SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQK  205 (397)
Q Consensus       135 ~-----~----~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~  205 (397)
                      +     .    .+++..+|+.......      .......||.+++|+-.  -.++|+   .|+               .
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~------~~~~~~~~da~flD~f~--p~~np~---~w~---------------~  191 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTL------DDSLNNQVDAWFLDGFA--PAKNPD---MWN---------------E  191 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGC------CGGGTTCEEEEEECSSC--C--CCT---TCS---------------H
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhc------ccccCCceeEEEECCCC--CCCChh---hhh---------------H
Confidence            1     1    2556777776654210      00013579999999841  123444   344               3


Q ss_pred             HHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793        206 KLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       206 ~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                      +++..           ..+++++||++..-||.       ..|+..|.+. ++.+..
T Consensus       192 ~~~~~-----------l~~~~~~g~~~~t~~~~-------~~vr~~l~~a-Gf~~~~  229 (689)
T 3pvc_A          192 QLFNA-----------MARMTRPGGTFSTFTAA-------GFVRRGLQQA-GFNVTK  229 (689)
T ss_dssp             HHHHH-----------HHHHEEEEEEEEESCCC-------HHHHHHHHHT-TCEEEE
T ss_pred             HHHHH-----------HHHHhCCCCEEEeccCc-------HHHHHHHHhC-CeEEEe
Confidence            45555           67788999998765554       3677777776 465554

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.04  E-value=0.058  Score=52.74  Aligned_cols=53  Identities=17%  Similarity=0.172  Sum_probs=38.9

Q ss_pred             ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ..++++|++||-.|+|+ |..++++|..+ +..+|+++|.++++++.++    ++|.+.
T Consensus       190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~  243 (376)
T 1e3i_A          190 TAKVTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAK----ALGATD  243 (376)
T ss_dssp             TSCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HhCCcE
Confidence            34678999999998754 55566777765 3348999999999987764    578753

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.00  E-value=0.063  Score=52.43  Aligned_cols=53  Identities=15%  Similarity=0.145  Sum_probs=39.0

Q ss_pred             ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ..++++|++||-.|+|+ |..++++|..+ +..+|+++|.++++++.++    ++|.+.
T Consensus       187 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~  240 (374)
T 1cdo_A          187 TAKVEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAK----VFGATD  240 (374)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH----HTTCCE
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HhCCce
Confidence            34678999999998754 55566777764 2338999999999988764    578754

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=94.94  E-value=0.042  Score=53.11  Aligned_cols=52  Identities=13%  Similarity=0.130  Sum_probs=40.0

Q ss_pred             cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q psy17793         81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI  138 (397)
Q Consensus        81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v  138 (397)
                      ..+++|++||-.|||+ |..++++|..+  +.+|+++|.++++++.++    ++|.+.+
T Consensus       172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~----~lGa~~v  224 (348)
T 3two_A          172 SKVTKGTKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDAL----SMGVKHF  224 (348)
T ss_dssp             TTCCTTCEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHH----HTTCSEE
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHH----hcCCCee
Confidence            3678999999998765 66667777765  358999999999988664    5787653

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.92  E-value=0.078  Score=51.28  Aligned_cols=54  Identities=15%  Similarity=0.145  Sum_probs=39.4

Q ss_pred             hccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         79 HYLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ....+++|++||=.|+|+ |..++++|..+ +..+|+++|.++++++.++    ++|.+.
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~  214 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHL-GAGRIFAVGSRKHCCDIAL----EYGATD  214 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTT-TCSSEEEECCCHHHHHHHH----HHTCCE
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHH----HhCCce
Confidence            345678999999998765 55566777654 2337999999999987765    468753

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.90  E-value=0.09  Score=51.43  Aligned_cols=53  Identities=17%  Similarity=0.238  Sum_probs=39.8

Q ss_pred             ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...+++|++||=.|||+ |..++++|..++ ..+|+++|.++++++.++    ++|.+.
T Consensus       188 ~~~~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~  241 (378)
T 3uko_A          188 TAKVEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKKYETAK----KFGVNE  241 (378)
T ss_dssp             TTCCCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTHHHHHH----TTTCCE
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCcE
Confidence            35678999999998754 566667777653 348999999999988664    578754

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=94.90  E-value=0.068  Score=52.11  Aligned_cols=53  Identities=11%  Similarity=0.191  Sum_probs=39.0

Q ss_pred             ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ..++++|++||-.|+|+ |..++++|..++ ..+|+++|.++++++.++    ++|.+.
T Consensus       185 ~~~~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~~~~~~~----~lGa~~  238 (373)
T 2fzw_A          185 TAKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAK----EFGATE  238 (373)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HHTCSE
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCce
Confidence            34678999999998754 455666776652 338999999999988765    468754

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.87  E-value=0.069  Score=52.14  Aligned_cols=53  Identities=13%  Similarity=0.142  Sum_probs=39.0

Q ss_pred             ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ..++++|++||-.|+|+ |..++++|..+ +..+|+++|.++++++.++    ++|.+.
T Consensus       186 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~  239 (374)
T 2jhf_A          186 VAKVTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAK----EVGATE  239 (374)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HhCCce
Confidence            34678999999998754 55566677664 2338999999999988764    578753

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=94.85  E-value=0.26  Score=45.43  Aligned_cols=89  Identities=10%  Similarity=0.064  Sum_probs=61.0

Q ss_pred             CCCeEEEEcCCCC-hHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc-chhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPG-NKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS-SQIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG-~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~  161 (397)
                      .|+.+|=.||+.+ |.+..+|..+ ..+.+|+.+|.+++.++.+.+.+++.+-.++.++..|.++...- ...+.....+
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV   84 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4788898888653 5666666543 34678999999999999999888888766788889998764210 0001111112


Q ss_pred             cccCccEEEEcCCC
Q psy17793        162 QKESFDRILLDAPC  175 (397)
Q Consensus       162 ~~~~fD~Il~DpPC  175 (397)
                        ++.|.++.++-.
T Consensus        85 --G~iD~lvnnAg~   96 (256)
T 4fs3_A           85 --GNIDGVYHSIAF   96 (256)
T ss_dssp             --CCCSEEEECCCC
T ss_pred             --CCCCEEEecccc
Confidence              679999987753

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.64  E-value=0.053  Score=52.94  Aligned_cols=48  Identities=17%  Similarity=0.081  Sum_probs=35.2

Q ss_pred             CCCeEEEEcC-C-CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         85 PGQKVLDMCA-A-PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        85 ~g~~VLDlca-g-pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      +|++||=.|+ | .|..++++|..+ .+.+|+++|.++++++.++    ++|.+.
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~-~g~~Vi~~~~~~~~~~~~~----~lGad~  220 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQR-TDLTVIATASRPETQEWVK----SLGAHH  220 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHH----HTTCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHHH----HcCCCE
Confidence            7889998873 3 255666777654 3569999999999988765    478754

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=94.51  E-value=0.04  Score=54.24  Aligned_cols=77  Identities=5%  Similarity=-0.061  Sum_probs=50.4

Q ss_pred             CeEEEEcCCCChHHHHHHHH---------------cCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccc
Q psy17793         87 QKVLDMCAAPGNKLTHIALL---------------MNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINT  150 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~---------------~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~  150 (397)
                      -+|+|+||++|..|+.+...               -.+...|+.+|.-..-+..+-+++..+.- ++-.+..+....+..
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~  132 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence            47999999999888754443               12357899999999988888776653211 022344444444322


Q ss_pred             cchhhHHHhhhcccCccEEEE
Q psy17793        151 SSQIDIERMKLQKESFDRILL  171 (397)
Q Consensus       151 ~~~~d~~~~~~~~~~fD~Il~  171 (397)
                      .        .++.++||.|..
T Consensus       133 r--------lfp~~S~d~v~S  145 (359)
T 1m6e_X          133 R--------LFPRNTLHFIHS  145 (359)
T ss_dssp             C--------CSCTTCBSCEEE
T ss_pred             c--------cCCCCceEEEEe
Confidence            1        256788999975

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.41  E-value=0.27  Score=47.61  Aligned_cols=49  Identities=24%  Similarity=0.176  Sum_probs=37.1

Q ss_pred             ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q psy17793         80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEET  129 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n  129 (397)
                      ...+++|++||=.|||+ |..++++|..+ +...|+++|.++++++.+++.
T Consensus       174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          174 RAGVRLGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             HHTCCTTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh
Confidence            34678999999998755 56666777765 233499999999999888753

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=94.22  E-value=0.44  Score=43.30  Aligned_cols=86  Identities=10%  Similarity=0.029  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~--~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~  161 (397)
                      .+.+||=.| |+|+.+.+++..+.  .+.+|+.++.++..++.+.+.++..+ .++.++..|..+...-  ... .....
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~--~~~~~~~~~   78 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSI--RALRDFLRK   78 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT-CCCEEEECCTTCHHHH--HHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC-CeeEEEECCCCCHHHH--HHHHHHHHH
Confidence            355677554 66888888887553  35789999999998888887777765 3578888998764210  000 00000


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      ..+.+|.|+.++-
T Consensus        79 ~~g~id~li~~Ag   91 (276)
T 1wma_A           79 EYGGLDVLVNNAG   91 (276)
T ss_dssp             HHSSEEEEEECCC
T ss_pred             hcCCCCEEEECCc
Confidence            1147899998664

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=94.18  E-value=0.018  Score=53.68  Aligned_cols=72  Identities=13%  Similarity=0.161  Sum_probs=44.0

Q ss_pred             EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcc
Q psy17793        138 IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL  217 (397)
Q Consensus       138 v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~  217 (397)
                      .+++++|+.....         ....++||+|++|||+.......   ...      .....+...-..+|..       
T Consensus         5 ~~l~~gD~~~~l~---------~l~~~~vdlI~~DPPY~~~~~~~---d~~------~~~~~y~~~~~~~l~~-------   59 (260)
T 1g60_A            5 NKIHQMNCFDFLD---------QVENKSVQLAVIDPPYNLSKADW---DSF------DSHNEFLAFTYRWIDK-------   59 (260)
T ss_dssp             SSEEECCHHHHHH---------HSCTTCEEEEEECCCCSSCSSGG---GCC------SSHHHHHHHHHHHHHH-------
T ss_pred             CeEEechHHHHHH---------hccccccCEEEECCCCCCCcccc---ccc------CCHHHHHHHHHHHHHH-------
Confidence            3567888866532         13456899999999985321110   001      0112222333667777       


Q ss_pred             ccccccccccCCcEEEEEecC
Q psy17793        218 FDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       218 ~~~~a~~lLkpgG~lvysTCS  238 (397)
                          +.++|++||.++...|.
T Consensus        60 ----~~~~Lk~~g~i~v~~~d   76 (260)
T 1g60_A           60 ----VLDKLDKDGSLYIFNTP   76 (260)
T ss_dssp             ----HHHHEEEEEEEEEEECH
T ss_pred             ----HHHHhcCCeEEEEEcCc
Confidence                88999999999887543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.16  E-value=0.094  Score=51.30  Aligned_cols=50  Identities=20%  Similarity=0.239  Sum_probs=38.8

Q ss_pred             CCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         82 DVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        82 ~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      .+++|++||-.|+|+ |..++++|..+  +.+|+++|.++++++.++    ++|.+.
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~----~lGa~~  241 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAK----ALGADE  241 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHH----HHTCSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----HcCCcE
Confidence            678999999999865 56667777765  357999999999988765    368654

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=94.16  E-value=0.24  Score=49.48  Aligned_cols=45  Identities=9%  Similarity=0.034  Sum_probs=34.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCCcE----EEEEeCCHHHHHHHHHHHH
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDTGT----LIALDKSKPRVTKLEETIK  131 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~~~----V~avD~s~~rl~~l~~n~~  131 (397)
                      -+|+|+|||.||.+..+-..-.+-..    |.|+|+++.+++..+.|..
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~   59 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS   59 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence            38999999999998876653100123    8999999999999888864

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=93.87  E-value=0.074  Score=51.27  Aligned_cols=51  Identities=12%  Similarity=0.003  Sum_probs=38.1

Q ss_pred             CCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         82 DVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        82 ~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ++ +|++||-.|+|+ |..++++|..+.++.+|+++|.++++++.++    ++|.+.
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~----~lGa~~  219 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFAL----ELGADY  219 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHH----HHTCSE
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH----HhCCCE
Confidence            67 899999999864 5566677776521358999999999987765    467654

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=93.84  E-value=0.6  Score=46.25  Aligned_cols=78  Identities=13%  Similarity=-0.046  Sum_probs=46.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc----------------CCCcEEEEEeCCHHHHHHHHHH-------H-HHhCC-CcEEE
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM----------------NDTGTLIALDKSKPRVTKLEET-------I-KKLQL-SSIQT  140 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~----------------~~~~~V~avD~s~~rl~~l~~n-------~-~~~g~-~~v~~  140 (397)
                      ..+|+|+||++|..|+.+...+                .+...|+.+|.-..-+..+=+.       + +..|- .+-.+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            4689999999999999877651                1346789999873333222111       1 12231 12245


Q ss_pred             EEcccccccccchhhHHHhhhcccCccEEEE
Q psy17793        141 HVYDSTRINTSSQIDIERMKLQKESFDRILL  171 (397)
Q Consensus       141 ~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~  171 (397)
                      ..+....+...        .++.++||.|..
T Consensus       133 ~~gvpgSFy~r--------lfp~~S~d~v~S  155 (384)
T 2efj_A          133 IGAMPGSFYSR--------LFPEESMHFLHS  155 (384)
T ss_dssp             EEECCSCTTSC--------CSCTTCEEEEEE
T ss_pred             EEecchhhhhc--------cCCCCceEEEEe
Confidence            55555554322        256789999976

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=93.64  E-value=0.18  Score=48.94  Aligned_cols=52  Identities=13%  Similarity=0.075  Sum_probs=39.3

Q ss_pred             ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...+++|++||=.|+|+ |..++++|..+  +.+|+++|.++++++.++    ++|.+.
T Consensus       184 ~~~~~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~----~lGa~~  236 (363)
T 3uog_A          184 KGHLRAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAF----ALGADH  236 (363)
T ss_dssp             TTCCCTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH----HHTCSE
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHH----HcCCCE
Confidence            34578999999999765 55666777764  358999999999988764    468754

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.61  E-value=0.073  Score=51.40  Aligned_cols=49  Identities=20%  Similarity=0.165  Sum_probs=37.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCH---HHHHHHHHHHHHhC
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK---PRVTKLEETIKKLQ  134 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~---~rl~~l~~n~~~~g  134 (397)
                      ..+|+.|||.+||+|..+..... +  +-+.+++|+++   ..++.+++++++.|
T Consensus       240 ~~~~~~vlDpF~GsGtt~~aa~~-~--~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          240 SHPGSTVLDFFAGSGVTARVAIQ-E--GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHH-H--TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCCEEEecCCCCCHHHHHHHH-c--CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            36899999999999987654444 3  35799999999   99999999998776

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.50  E-value=0.053  Score=52.32  Aligned_cols=50  Identities=12%  Similarity=0.121  Sum_probs=41.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL  135 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~  135 (397)
                      ..+|+.|||.+||+|..+. .|..+  +-+.+++|+++..++.+++++++.+.
T Consensus       250 ~~~~~~VlDpF~GsGtt~~-aa~~~--gr~~ig~e~~~~~~~~~~~r~~~~~~  299 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGL-VAERE--SRKWISFEMKPEYVAASAFRFLDNNI  299 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHH-HHHHT--TCEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred             CCCCCEEEECCCCCCHHHH-HHHHc--CCCEEEEeCCHHHHHHHHHHHHhccc
Confidence            3689999999999998664 44443  35899999999999999999887765

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=93.49  E-value=0.85  Score=43.53  Aligned_cols=53  Identities=11%  Similarity=0.088  Sum_probs=38.7

Q ss_pred             ccCCCCCCeEEEEcCCCCh-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCAAPGN-KLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~-kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ....++|++||=.|||+.+ .++++|..+ +...++++|.++++++.++    ++|.+.
T Consensus       155 ~~~~~~g~~VlV~GaG~vG~~aiq~ak~~-G~~~vi~~~~~~~k~~~a~----~lGa~~  208 (346)
T 4a2c_A          155 LAQGCENKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDISSEKLALAK----SFGAMQ  208 (346)
T ss_dssp             HTTCCTTSEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred             HhccCCCCEEEEECCCCcchHHHHHHHHc-CCcEEEEEechHHHHHHHH----HcCCeE
Confidence            3467899999999887643 455666665 4557899999999987664    578764

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=93.47  E-value=0.19  Score=48.17  Aligned_cols=52  Identities=19%  Similarity=0.136  Sum_probs=38.3

Q ss_pred             cCCCCCCeEEEEcCCCCh-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPGQKVLDMCAAPGN-KLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~-kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ..+++|++||=.|||+++ .++++|..+ .+.+|+++|.++++++.+    +++|.+.
T Consensus       159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~-~g~~Vi~~~~~~~r~~~~----~~~Ga~~  211 (348)
T 4eez_A          159 SGVKPGDWQVIFGAGGLGNLAIQYAKNV-FGAKVIAVDINQDKLNLA----KKIGADV  211 (348)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT-SCCEEEEEESCHHHHHHH----HHTTCSE
T ss_pred             cCCCCCCEEEEEcCCCccHHHHHHHHHh-CCCEEEEEECcHHHhhhh----hhcCCeE
Confidence            457899999999998754 444555544 467999999999987655    4567654

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=93.46  E-value=0.19  Score=47.07  Aligned_cols=128  Identities=16%  Similarity=0.146  Sum_probs=78.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc------CCCcEEEEEe-----CCH----------------------HHHHHH---HH
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM------NDTGTLIALD-----KSK----------------------PRVTKL---EE  128 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~------~~~~~V~avD-----~s~----------------------~rl~~l---~~  128 (397)
                      || .|+++|+.-|+-+..+|.+.      +...+|+++|     ..+                      +.++.+   .+
T Consensus        70 pG-~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~  148 (257)
T 3tos_A           70 PG-VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE  148 (257)
T ss_dssp             CS-EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred             CC-eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence            45 79999999999988877642      2357899999     221                      112211   12


Q ss_pred             HHHHhCC--CcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHH
Q psy17793        129 TIKKLQL--SSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKK  206 (397)
Q Consensus       129 n~~~~g~--~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~  206 (397)
                      +.+++|.  ++|+++.+++...+...     ....+..+||.|.+|.-                  .....       ..
T Consensus       149 ~~~~~g~~~~~i~li~G~~~dTL~~~-----l~~~~~~~~dlv~ID~D------------------~Y~~t-------~~  198 (257)
T 3tos_A          149 CSDFFGHVTQRSVLVEGDVRETVPRY-----LAENPQTVIALAYFDLD------------------LYEPT-------KA  198 (257)
T ss_dssp             TTSTTTTSCCSEEEEESCHHHHHHHH-----HHHCTTCCEEEEEECCC------------------CHHHH-------HH
T ss_pred             hhhhcCCCCCcEEEEEecHHHHHHHH-----HHhCCCCceEEEEEcCc------------------ccchH-------HH
Confidence            2234665  57999999997653110     00113347999999874                  01111       34


Q ss_pred             HHHHHhhhhccccccccccccCCcEEEEEecCC--CccccHHHHHHHHHHC
Q psy17793        207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL--SVEENEAVIAWILHRH  255 (397)
Q Consensus       207 lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~--~~eEnE~vV~~~L~~~  255 (397)
                      .++.           ...+|+|||.|++-....  .+.+ ...+..+++++
T Consensus       199 ~le~-----------~~p~l~~GGvIv~DD~~~~~w~G~-~~A~~ef~~~~  237 (257)
T 3tos_A          199 VLEA-----------IRPYLTKGSIVAFDELDNPKWPGE-NIAMRKVLGLD  237 (257)
T ss_dssp             HHHH-----------HGGGEEEEEEEEESSTTCTTCTHH-HHHHHHHTCTT
T ss_pred             HHHH-----------HHHHhCCCcEEEEcCCCCCCChHH-HHHHHHHHhhC
Confidence            4555           888999999999986532  2332 33456666655

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=93.36  E-value=0.18  Score=56.00  Aligned_cols=86  Identities=17%  Similarity=0.212  Sum_probs=55.4

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhh---HHHhhh
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDT-GTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QID---IERMKL  161 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~-~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d---~~~~~~  161 (397)
                      -+++|++||.||.+.-+...  +- -.|+|+|+++.+.+..+.|.     .+..++..|...+.... ..|   .....+
T Consensus       541 l~~iDLFaG~GGlslGl~~A--G~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~~l  613 (1002)
T 3swr_A          541 LRTLDVFSGCGGLSEGFHQA--GISDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQRL  613 (1002)
T ss_dssp             EEEEEESCTTSHHHHHHHHH--TSEEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred             CeEEEeccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhhhc
Confidence            38999999999999877653  22 35889999999999887763     34456666654331000 000   000001


Q ss_pred             -cccCccEEEEcCCCCCCC
Q psy17793        162 -QKESFDRILLDAPCSGFG  179 (397)
Q Consensus       162 -~~~~fD~Il~DpPCSg~G  179 (397)
                       ..+.+|+|+.=|||-+..
T Consensus       614 p~~~~vDll~GGpPCQ~FS  632 (1002)
T 3swr_A          614 PQKGDVEMLCGGPPCQGFS  632 (1002)
T ss_dssp             CCTTTCSEEEECCCCTTCC
T ss_pred             ccCCCeeEEEEcCCCcchh
Confidence             124699999999997754

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.27  E-value=0.11  Score=50.86  Aligned_cols=52  Identities=21%  Similarity=0.178  Sum_probs=37.9

Q ss_pred             cC-CCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LD-VQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~-~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ++ +++|++||-.|+|+ |..++++|..+ +..+|+++|.++++++.++    ++|.+.
T Consensus       190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~  243 (380)
T 1vj0_A          190 YPESFAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAE----EIGADL  243 (380)
T ss_dssp             CSSCCBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred             cCCCCCCCEEEEECcCHHHHHHHHHHHHc-CCceEEEEcCCHHHHHHHH----HcCCcE
Confidence            46 78999999999543 44555666654 2248999999999988765    578754

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=93.25  E-value=1.1  Score=40.87  Aligned_cols=89  Identities=15%  Similarity=-0.004  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCCC-hHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPG-NKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG-~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|.++|=.|++.| |.+.++|..+ ..+.+|+.++.+....+.+.+..+..+-.++.++..|.++...-. ..+.-..  
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE--   83 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH--
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH--
Confidence            4678888887743 4666666543 346789999999877777777777766557889999987652100 0000001  


Q ss_pred             cccCccEEEEcCCC
Q psy17793        162 QKESFDRILLDAPC  175 (397)
Q Consensus       162 ~~~~fD~Il~DpPC  175 (397)
                      .-+.+|.++.++-.
T Consensus        84 ~~g~id~li~~Ag~   97 (266)
T 3oig_A           84 QVGVIHGIAHCIAF   97 (266)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HhCCeeEEEEcccc
Confidence            11478999987653

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=93.18  E-value=0.19  Score=53.09  Aligned_cols=132  Identities=12%  Similarity=0.118  Sum_probs=75.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-----------CCCcEEEEEeC---CHHHHHHHH-----------HHHHHhCC--C--
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-----------NDTGTLIALDK---SKPRVTKLE-----------ETIKKLQL--S--  136 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-----------~~~~~V~avD~---s~~rl~~l~-----------~n~~~~g~--~--  136 (397)
                      .-+|||+|-|+|.-.+......           ...-+++++|.   +++-+..+-           +.++.+..  .  
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            3489999999998876655432           11246899999   666665221           22222211  0  


Q ss_pred             ----------cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHH
Q psy17793        137 ----------SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKK  206 (397)
Q Consensus       137 ----------~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~  206 (397)
                                .+++..+|+.......      .......||.|++|+-  +-.++|+   .|+               .+
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~------~~~~~~~~d~~~~D~f--~p~~np~---~w~---------------~~  200 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQL------DDSLNQKVDAWFLDGF--APAKNPD---MWT---------------QN  200 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGB------CGGGTTCEEEEEECCS--CGGGCGG---GSC---------------HH
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhc------ccccCCcccEEEECCC--CCcCChh---hhh---------------HH
Confidence                      1345556665543210      0001357999999984  1112333   344               44


Q ss_pred             HHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793        207 LLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       207 lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                      ++..           ..+++++||++..-+|.       ..|+..|.+. ++.+..
T Consensus       201 ~~~~-----------l~~~~~~g~~~~t~~~~-------~~vr~~L~~a-Gf~v~~  237 (676)
T 3ps9_A          201 LFNA-----------MARLARPGGTLATFTSA-------GFVRRGLQDA-GFTMQK  237 (676)
T ss_dssp             HHHH-----------HHHHEEEEEEEEESCCC-------HHHHHHHHHH-TCEEEE
T ss_pred             HHHH-----------HHHHhCCCCEEEeccCc-------HHHHHHHHhC-CeEEEe
Confidence            5565           77789999987654443       3566666665 455544

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=93.15  E-value=0.36  Score=46.24  Aligned_cols=52  Identities=17%  Similarity=0.257  Sum_probs=40.0

Q ss_pred             ccCCCCCCeEEEEcCC--CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCAA--PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlcag--pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...+++|++||-.|+|  .|..++++|...  +.+|+++|.++++++.+++    +|.+.
T Consensus       139 ~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lga~~  192 (340)
T 3gms_A          139 TLNLQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLR----LGAAY  192 (340)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSE
T ss_pred             hcccCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----CCCcE
Confidence            4567899999999887  466677777765  3589999999999887754    67653

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=93.00  E-value=1  Score=41.15  Aligned_cols=88  Identities=17%  Similarity=0.170  Sum_probs=57.5

Q ss_pred             CCCeEEEEcCC-CChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793         85 PGQKVLDMCAA-PGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcag-pG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~  161 (397)
                      .|.+||=.|+. . +.+.+++..+ ..+.+|+.+|.+...++.+.+.++..+-.++.++..|.++...-  ... .....
T Consensus        21 ~~k~vlITGasg~-GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v--~~~~~~~~~   97 (266)
T 3o38_A           21 KGKVVLVTAAAGT-GIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAV--DALITQTVE   97 (266)
T ss_dssp             TTCEEEESSCSSS-SHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHH--HHHHHHHHH
T ss_pred             CCCEEEEECCCCC-chHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHH--HHHHHHHHH
Confidence            36678877763 3 4555566543 34678999999999999888888777656799999999765210  000 00001


Q ss_pred             cccCccEEEEcCCC
Q psy17793        162 QKESFDRILLDAPC  175 (397)
Q Consensus       162 ~~~~fD~Il~DpPC  175 (397)
                      .-+.+|.++.++--
T Consensus        98 ~~g~id~li~~Ag~  111 (266)
T 3o38_A           98 KAGRLDVLVNNAGL  111 (266)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HhCCCcEEEECCCc
Confidence            11478999997653

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=92.90  E-value=1.6  Score=40.88  Aligned_cols=87  Identities=13%  Similarity=0.061  Sum_probs=55.6

Q ss_pred             CCCCeEEEEcCCCC-hHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhh
Q psy17793         84 QPGQKVLDMCAAPG-NKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMK  160 (397)
Q Consensus        84 ~~g~~VLDlcagpG-~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~  160 (397)
                      -.|.++|=.|++.| |.+.++|..+ ..+.+|+.++.++...+.+++..+..+  ++.++..|.++...-  ... ....
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v--~~~~~~~~  104 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASI--DAVFETLE  104 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHH--HHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHH--HHHHHHHH
Confidence            35778998888754 5666666544 345689999999877777776666665  578888998765210  000 0000


Q ss_pred             hcccCccEEEEcCC
Q psy17793        161 LQKESFDRILLDAP  174 (397)
Q Consensus       161 ~~~~~fD~Il~DpP  174 (397)
                      ..-+.+|.++.++-
T Consensus       105 ~~~g~iD~lVnnAG  118 (293)
T 3grk_A          105 KKWGKLDFLVHAIG  118 (293)
T ss_dssp             HHTSCCSEEEECCC
T ss_pred             HhcCCCCEEEECCc
Confidence            11257999998664

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=92.83  E-value=0.15  Score=49.16  Aligned_cols=47  Identities=17%  Similarity=0.153  Sum_probs=33.6

Q ss_pred             CCCeEEEEc-CC-CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         85 PGQKVLDMC-AA-PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        85 ~g~~VLDlc-ag-pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      +|++||=.| +| .|..++++|...  +.+|+++|.++++++.+++    +|.+.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~  198 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKK----MGADI  198 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHH----HTCSE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcE
Confidence            899999774 32 255556666654  3599999999999887764    67654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=92.77  E-value=0.18  Score=48.52  Aligned_cols=49  Identities=18%  Similarity=0.207  Sum_probs=37.6

Q ss_pred             CCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         82 DVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        82 ~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      .+++|++||-.|+|+ |..++++|..+  +.+|+++|.++++++.++    ++|.+
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~----~lGa~  210 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAK----ELGAD  210 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHH----HTTCS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----HCCCC
Confidence            678999999999854 55566666654  359999999999988764    46765

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=92.69  E-value=0.19  Score=48.00  Aligned_cols=50  Identities=26%  Similarity=0.353  Sum_probs=34.4

Q ss_pred             cCCCCCCeEEEEcCC--CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         81 LDVQPGQKVLDMCAA--PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        81 L~~~~g~~VLDlcag--pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      .++++|++||-.|++  -|..+.+++..  .+.+|+++|.++++++.+    +++|..
T Consensus       141 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~--~G~~V~~~~~~~~~~~~~----~~~g~~  192 (333)
T 1v3u_A          141 CGVKGGETVLVSAAAGAVGSVVGQIAKL--KGCKVVGAAGSDEKIAYL----KQIGFD  192 (333)
T ss_dssp             SCCCSSCEEEEESTTBHHHHHHHHHHHH--TTCEEEEEESSHHHHHHH----HHTTCS
T ss_pred             hCCCCCCEEEEecCCCcHHHHHHHHHHH--CCCEEEEEeCCHHHHHHH----HhcCCc
Confidence            467899999999973  33334444443  345899999999888766    345654

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=92.54  E-value=0.18  Score=47.81  Aligned_cols=51  Identities=12%  Similarity=0.005  Sum_probs=38.3

Q ss_pred             ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...+++|++||=.|+|+ |..++++|..++  .+|++++ ++++++.++    ++|.+.
T Consensus       137 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~~~----~lGa~~  188 (315)
T 3goh_A          137 KIPLTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQALAA----KRGVRH  188 (315)
T ss_dssp             TSCCCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHHHH----HHTEEE
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHHHH----HcCCCE
Confidence            34678999999999854 666777777653  4999999 998887764    467643

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=92.52  E-value=0.44  Score=46.10  Aligned_cols=51  Identities=18%  Similarity=0.137  Sum_probs=38.3

Q ss_pred             cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      .++++|++||-.|+|+ |..++++|..+  +.+|+++|.++++++.+++    +|.+.
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~  226 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK----MGADH  226 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH----cCCCE
Confidence            4678999999999854 55566677665  3479999999999877653    68654

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=92.45  E-value=0.052  Score=52.48  Aligned_cols=67  Identities=18%  Similarity=0.186  Sum_probs=41.8

Q ss_pred             EEEE-EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhc
Q psy17793        138 IQTH-VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVS  216 (397)
Q Consensus       138 v~~~-~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~  216 (397)
                      ..++ ++|+...+..         +..++||+|++|||+... .     ..|.      ....+...-...|..      
T Consensus        39 ~~l~i~gD~l~~L~~---------l~~~svDlI~tDPPY~~~-~-----d~~~------~~~~~~~~~~~~l~~------   91 (319)
T 1eg2_A           39 RHVYDVCDCLDTLAK---------LPDDSVQLIICDPPYNIM-L-----ADWD------DHMDYIGWAKRWLAE------   91 (319)
T ss_dssp             EEEEEECCHHHHHHT---------SCTTCEEEEEECCCSBCC-G-----GGGG------TCSSHHHHHHHHHHH------
T ss_pred             ceEEECCcHHHHHHh---------CccCCcCEEEECCCCCCC-C-----CCcc------CHHHHHHHHHHHHHH------
Confidence            5677 9998775421         345689999999998432 0     0111      001111122556666      


Q ss_pred             cccccccccccCCcEEEEEe
Q psy17793        217 LFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       217 ~~~~~a~~lLkpgG~lvysT  236 (397)
                           +.++|++||.+++..
T Consensus        92 -----~~rvLk~~G~i~i~~  106 (319)
T 1eg2_A           92 -----AERVLSPTGSIAIFG  106 (319)
T ss_dssp             -----HHHHEEEEEEEEEEE
T ss_pred             -----HHHHcCCCeEEEEEc
Confidence                 889999999998763

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=92.29  E-value=0.58  Score=40.87  Aligned_cols=50  Identities=22%  Similarity=0.303  Sum_probs=33.7

Q ss_pred             cCCCCCCeEEEEcCCC--ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         81 LDVQPGQKVLDMCAAP--GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        81 L~~~~g~~VLDlcagp--G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      .++++|++||..|++.  |..+.+++...  +.+|+++|.++++.+.++    ++|..
T Consensus        34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~----~~g~~   85 (198)
T 1pqw_A           34 GRLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLS----RLGVE   85 (198)
T ss_dssp             SCCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH----TTCCS
T ss_pred             hCCCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----HcCCC
Confidence            4678999999998542  33344444433  368999999998876654    35654

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=91.99  E-value=3  Score=38.31  Aligned_cols=87  Identities=14%  Similarity=0.093  Sum_probs=56.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCC------------HHHHHHHHHHHHHhCCCcEEEEEccccccccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKS------------KPRVTKLEETIKKLQLSSIQTHVYDSTRINTS  151 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s------------~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~  151 (397)
                      .|.+||=.|++ |+.+.++|..+ ..+.+|+.+|.+            ...++.+...++..+ .++.++..|..+...-
T Consensus         9 ~gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v   86 (287)
T 3pxx_A            9 QDKVVLVTGGA-RGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG-RKAYTAEVDVRDRAAV   86 (287)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT-SCEEEEECCTTCHHHH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC-CceEEEEccCCCHHHH
Confidence            46677777755 66777777654 345789999987            778888877777766 3588889998765210


Q ss_pred             c-hhhHHHhhhcccCccEEEEcCCC
Q psy17793        152 S-QIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       152 ~-~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                      . ..+....  .-+.+|.++.++--
T Consensus        87 ~~~~~~~~~--~~g~id~lv~nAg~  109 (287)
T 3pxx_A           87 SRELANAVA--EFGKLDVVVANAGI  109 (287)
T ss_dssp             HHHHHHHHH--HHSCCCEEEECCCC
T ss_pred             HHHHHHHHH--HcCCCCEEEECCCc
Confidence            0 0000001  11478999997753

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=91.98  E-value=0.25  Score=47.38  Aligned_cols=52  Identities=23%  Similarity=0.277  Sum_probs=36.4

Q ss_pred             ccCCCCCCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         80 YLDVQPGQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        80 ~L~~~~g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      ..++++|++||-.||  |-|..+.++|...  +.+|+++|.++++++.+++   ++|..
T Consensus       150 ~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~---~~g~~  203 (345)
T 2j3h_A          150 VCSPKEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKT---KFGFD  203 (345)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TSCCS
T ss_pred             HhCCCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCc
Confidence            346789999999987  3344455555543  3589999999998877652   35764

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=91.95  E-value=0.2  Score=47.94  Aligned_cols=52  Identities=19%  Similarity=0.177  Sum_probs=37.0

Q ss_pred             ccCCCCCCeEEEEcCC--CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         80 YLDVQPGQKVLDMCAA--PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        80 ~L~~~~g~~VLDlcag--pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      ...+++|++||-.|++  -|..++++|...  +.+|+++|.++++++.+.   +++|..
T Consensus       144 ~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~---~~~g~~  197 (336)
T 4b7c_A          144 VGQPKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLV---EELGFD  197 (336)
T ss_dssp             TTCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH---HTTCCS
T ss_pred             hcCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH---HHcCCC
Confidence            3468899999988873  355555666653  459999999999887762   345764

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=91.92  E-value=0.13  Score=49.91  Aligned_cols=52  Identities=10%  Similarity=0.059  Sum_probs=34.5

Q ss_pred             cCCCCC------CeEEEEcCCC-ChHH-HHHH-HHcCCCcEEEEEeCCHH---HHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPG------QKVLDMCAAP-GNKL-THIA-LLMNDTGTLIALDKSKP---RVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g------~~VLDlcagp-G~kt-~~lA-~~~~~~~~V~avD~s~~---rl~~l~~n~~~~g~~~  137 (397)
                      ..+++|      ++||=.|+|+ |..+ +++| ..+ +..+|+++|.+++   +++.++    ++|.+.
T Consensus       162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~----~lGa~~  225 (357)
T 2b5w_A          162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIE----ELDATY  225 (357)
T ss_dssp             HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHH----HTTCEE
T ss_pred             cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHH----HcCCcc
Confidence            356789      9999999733 3334 4555 433 2234999999988   877664    578643

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=91.82  E-value=2.7  Score=38.45  Aligned_cols=87  Identities=7%  Similarity=-0.008  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKK-LQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~-~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|..+|=.|++ |+.+.++|..+ ..+.+|+.+|.++..++.+.+.++. .+-.++.++..|.++...-. ..+.-..  
T Consensus         7 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--   83 (265)
T 3lf2_A            7 SEAVAVVTGGS-SGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACER--   83 (265)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHH--
Confidence            35677777755 66777777644 3456899999999999988888776 55445888899987652100 0000001  


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+..|.++.++-
T Consensus        84 ~~g~id~lvnnAg   96 (265)
T 3lf2_A           84 TLGCASILVNNAG   96 (265)
T ss_dssp             HHCSCSEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            1257899998764

>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii}

Probab=91.79  E-value=0.11  Score=46.07  Aligned_cols=34  Identities=35%  Similarity=0.653  Sum_probs=30.0

Q ss_pred             CCeEEEechhhhhhhhcccceecccccccCCCCC
Q psy17793        344 HPVQIIVDQPCALAVLRGADVFAPGVLAMPLGKN  377 (397)
Q Consensus       344 ~~~~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~  377 (397)
                      .+..|.||..+..|+++||++++|||+++..++.
T Consensus        93 ~~~~v~vd~gA~~~l~~GasL~~~GV~~~~g~f~  126 (179)
T 3d79_A           93 WPRRVVVDEGAVPHILNGADVMAPGIVDADEGIK  126 (179)
T ss_dssp             STTEEEECGGGHHHHHTTCCEEGGGEEEECTTCC
T ss_pred             cCCEEEECccHHHHHhCCCCcCCCcEEEccCCcc
Confidence            3468999999999999999999999999987654

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=91.74  E-value=0.34  Score=52.14  Aligned_cols=44  Identities=20%  Similarity=0.133  Sum_probs=33.7

Q ss_pred             CeEEEEcCCCChHHHHHHHHcC--C--CcEEEEEeCCHHHHHHHHHHH
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMN--D--TGTLIALDKSKPRVTKLEETI  130 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~--~--~~~V~avD~s~~rl~~l~~n~  130 (397)
                      -+|||++||.||.++-+.....  +  --.++|+|+++.+++..+.|.
T Consensus       213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            4799999999999876655310  0  125799999999999988773

>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2

Probab=91.71  E-value=0.11  Score=44.49  Aligned_cols=35  Identities=29%  Similarity=0.500  Sum_probs=30.6

Q ss_pred             CCeEEEechhhhhhhhcccceecccccccCCCCCC
Q psy17793        344 HPVQIIVDQPCALAVLRGADVFAPGVLAMPLGKNS  378 (397)
Q Consensus       344 ~~~~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~~  378 (397)
                      ....|.||..+..++++|+++++|||++++.++..
T Consensus        69 ~~~~v~vd~ga~~~l~~Ga~ll~~GV~~~~~~~~~  103 (153)
T 1q7h_A           69 SRNIVTVDEGAEPHILNGSDLFAPGIVSMDDSIRK  103 (153)
T ss_dssp             SSSEEEECTTTHHHHTTTCCEEGGGEEEECTTCCT
T ss_pred             cCCEEEECHhHHHHHHcCCCcCccccCcccCceeC
Confidence            44688999999999999999999999999876543

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=91.66  E-value=0.8  Score=43.11  Aligned_cols=87  Identities=11%  Similarity=0.092  Sum_probs=57.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .|.+||=.| |+|+.+.++|..+ ..+.+|+.+|.++..++.+.+.++..+..++.++..|.++...-  ... ......
T Consensus        40 ~~k~vlVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v--~~~~~~~~~~  116 (293)
T 3rih_A           40 SARSVLVTG-GTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSC--ADAARTVVDA  116 (293)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHH--HHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHH--HHHHHHHHHH
Confidence            456677655 4577777777654 34568999999999988888877776655788899999765210  000 000011


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.++.++-
T Consensus       117 ~g~iD~lvnnAg  128 (293)
T 3rih_A          117 FGALDVVCANAG  128 (293)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            257899998764

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=91.61  E-value=0.35  Score=46.51  Aligned_cols=50  Identities=16%  Similarity=0.115  Sum_probs=35.4

Q ss_pred             cCCCCCCeEEEEcCC--CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         81 LDVQPGQKVLDMCAA--PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        81 L~~~~g~~VLDlcag--pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      +++++|++||-.|++  .|..+.+++...  +.+|+++|.++++++.++    ++|..
T Consensus       165 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~----~~g~~  216 (347)
T 2hcy_A          165 ANLMAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFR----SIGGE  216 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHH----HTTCC
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHH----HcCCc
Confidence            367899999999973  344455555543  458999999998876654    45764

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.55  E-value=1.5  Score=40.11  Aligned_cols=84  Identities=8%  Similarity=0.122  Sum_probs=53.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .|.++|=.|++ |+.+.++|..+ ..+.+|+.+|.+++.++.+.+.+   + .++.++..|..+...-. ..+....  .
T Consensus         7 ~gk~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~--~   79 (255)
T 4eso_A            7 QGKKAIVIGGT-HGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G-PRVHALRSDIADLNEIAVLGAAAGQ--T   79 (255)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G-GGEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-CcceEEEccCCCHHHHHHHHHHHHH--H
Confidence            46778877755 66777777654 34568999999998887766544   3 35788889987652100 0000001  1


Q ss_pred             ccCccEEEEcCCC
Q psy17793        163 KESFDRILLDAPC  175 (397)
Q Consensus       163 ~~~fD~Il~DpPC  175 (397)
                      -+.+|.++.++-.
T Consensus        80 ~g~id~lv~nAg~   92 (255)
T 4eso_A           80 LGAIDLLHINAGV   92 (255)
T ss_dssp             HSSEEEEEECCCC
T ss_pred             hCCCCEEEECCCC
Confidence            2578999987643

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=91.37  E-value=0.28  Score=47.69  Aligned_cols=51  Identities=20%  Similarity=0.174  Sum_probs=38.0

Q ss_pred             cCCCCCCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPGQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      .++++|++||-.|+  +.|..++++|...  +.+|+++|.++++++.+++    +|.+.
T Consensus       159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~  211 (362)
T 2c0c_A          159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKS----LGCDR  211 (362)
T ss_dssp             TCCCTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSE
T ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHH----cCCcE
Confidence            46789999999984  4466666777764  3589999999998877654    67653

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=91.33  E-value=0.22  Score=48.02  Aligned_cols=52  Identities=19%  Similarity=0.180  Sum_probs=37.9

Q ss_pred             ccCCCCCCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...+++|++||=.||  |.|..++++|..+  +.+|++++.++++++.+++    +|.+.
T Consensus       154 ~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~  207 (342)
T 4eye_A          154 RGQLRAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKS----VGADI  207 (342)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCSE
T ss_pred             hcCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcE
Confidence            345789999998886  3355666666664  3589999999998876654    67654

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=91.31  E-value=1.5  Score=40.08  Aligned_cols=86  Identities=12%  Similarity=0.100  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .+..+|=.|++ |+.+.++|..+ ..+.+|+.+|.++.+++.+.+.++..| .++.++..|.++...-  ... ......
T Consensus         6 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v--~~~~~~~~~~   81 (252)
T 3h7a_A            6 RNATVAVIGAG-DYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG-GRIVARSLDARNEDEV--TAFLNAADAH   81 (252)
T ss_dssp             CSCEEEEECCS-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT-CEEEEEECCTTCHHHH--HHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECcCCCHHHH--HHHHHHHHhh
Confidence            35677766655 66777777654 345689999999999999988888876 3688899998765210  000 001112


Q ss_pred             ccCccEEEEcCCC
Q psy17793        163 KESFDRILLDAPC  175 (397)
Q Consensus       163 ~~~fD~Il~DpPC  175 (397)
                       +.+|.++.++-.
T Consensus        82 -g~id~lv~nAg~   93 (252)
T 3h7a_A           82 -APLEVTIFNVGA   93 (252)
T ss_dssp             -SCEEEEEECCCC
T ss_pred             -CCceEEEECCCc
Confidence             578999987643

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=91.23  E-value=0.94  Score=43.44  Aligned_cols=51  Identities=22%  Similarity=0.120  Sum_probs=36.1

Q ss_pred             cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      .++ +|++||-.|+|+ |..++++|..+ +..+|+++|.++++++.++    ++|.+.
T Consensus       164 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~----~~Ga~~  215 (348)
T 2d8a_A          164 GPI-SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAK----KVGADY  215 (348)
T ss_dssp             SCC-TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHH----HHTCSE
T ss_pred             cCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HhCCCE
Confidence            456 899999999843 44555666654 2237999999999887765    467653

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=91.21  E-value=1  Score=44.22  Aligned_cols=51  Identities=20%  Similarity=0.279  Sum_probs=37.8

Q ss_pred             CCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         82 DVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        82 ~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      .+++|++||=.|||+ |..++++|..+ +..+|+++|.++++++.++    ++|.+.
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~  261 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHA-GASKVILSEPSEVRRNLAK----ELGADH  261 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHH----HHTCSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HcCCCE
Confidence            578999999998754 55566666654 3348999999999988765    568653

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=91.16  E-value=1.9  Score=40.43  Aligned_cols=87  Identities=11%  Similarity=0.115  Sum_probs=58.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKL  161 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~  161 (397)
                      -.|..||=.|++ |+.+.++|..+ ..+.+|+.++.++..++.+.+.++..+. ++.++..|.++...-  ... .....
T Consensus        29 l~gk~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v--~~~~~~~~~  104 (301)
T 3tjr_A           29 FDGRAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGF-DAHGVVCDVRHLDEM--VRLADEAFR  104 (301)
T ss_dssp             STTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHH--HHHHHHHHH
T ss_pred             cCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHH--HHHHHHHHH
Confidence            356788877765 66777777654 3456899999999999998888887764 578888998765210  000 00000


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      ..+.+|.++.++-
T Consensus       105 ~~g~id~lvnnAg  117 (301)
T 3tjr_A          105 LLGGVDVVFSNAG  117 (301)
T ss_dssp             HHSSCSEEEECCC
T ss_pred             hCCCCCEEEECCC
Confidence            1147999999764

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=91.11  E-value=0.45  Score=54.26  Aligned_cols=87  Identities=16%  Similarity=0.201  Sum_probs=55.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch-hhH---HHhh
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDT-GTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ-IDI---ERMK  160 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~-~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~-~d~---~~~~  160 (397)
                      .-++||++||.||.+.-+-..  +- -.|+|+|+++.+++..+.|.     .+..++..|...+..... .|.   ....
T Consensus       851 ~l~viDLFsG~GGlslGfe~A--G~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~gdi~~~~~~~  923 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQA--GISETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDCNVLLKLVMAGEVTNSLGQR  923 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHT--TSEEEEEEECCSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred             CceEEecccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhC-----CCCcEeeccHHHHhHhhhccchhhhhhhh
Confidence            348999999999999866552  22 35899999999999888773     334556666543310000 000   0000


Q ss_pred             hc-ccCccEEEEcCCCCCCC
Q psy17793        161 LQ-KESFDRILLDAPCSGFG  179 (397)
Q Consensus       161 ~~-~~~fD~Il~DpPCSg~G  179 (397)
                      ++ .+.+|+|+.=|||-+..
T Consensus       924 lp~~~~vDvl~GGpPCQ~FS  943 (1330)
T 3av4_A          924 LPQKGDVEMLCGGPPCQGFS  943 (1330)
T ss_dssp             CCCTTTCSEEEECCCCTTTC
T ss_pred             ccccCccceEEecCCCcccc
Confidence            11 24689999999997754

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=90.97  E-value=2.3  Score=39.77  Aligned_cols=86  Identities=13%  Similarity=0.046  Sum_probs=55.5

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAP-GNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagp-G~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|.++|=.|++. .+.+.++|..+ ..+.+|+.+|.++...+.+.+..+..+  .+.++..|.++...-. ..+.-...+
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDAESVDNMFKVLAEEW  106 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            477888888764 46777777644 346789999999877777777777665  3577888987652100 000000111


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                        +.+|.++.++-
T Consensus       107 --g~iD~lVnnAG  117 (296)
T 3k31_A          107 --GSLDFVVHAVA  117 (296)
T ss_dssp             --SCCSEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              57899998764

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=90.96  E-value=0.85  Score=43.31  Aligned_cols=50  Identities=24%  Similarity=0.245  Sum_probs=36.3

Q ss_pred             cCCCCCCeEEEEcCC--CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         81 LDVQPGQKVLDMCAA--PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        81 L~~~~g~~VLDlcag--pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      .++++|++||-.|++  -|..+.++|...  +.+|+++|.++++++.++    ++|.+
T Consensus       136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~----~~Ga~  187 (325)
T 3jyn_A          136 YQVKPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSSPEKAAHAK----ALGAW  187 (325)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH----HHTCS
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----HcCCC
Confidence            467899999988742  355555666654  358999999999988775    46764

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=90.80  E-value=2.3  Score=38.90  Aligned_cols=87  Identities=10%  Similarity=0.050  Sum_probs=58.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .|.++|=.|+ +|+.+.++|..+ ..+.+|+.+|.++..++.+.+.++..+-.++.++..|.++...-. ..+....  .
T Consensus         9 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~   85 (262)
T 3pk0_A            9 QGRSVVVTGG-TKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVE--E   85 (262)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHH--H
Confidence            3667776665 577777777654 345689999999999998888888776557889999987652100 0000001  1


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.++.++-
T Consensus        86 ~g~id~lvnnAg   97 (262)
T 3pk0_A           86 FGGIDVVCANAG   97 (262)
T ss_dssp             HSCCSEEEECCC
T ss_pred             hCCCCEEEECCC
Confidence            247999998764

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=90.70  E-value=3.7  Score=37.47  Aligned_cols=85  Identities=11%  Similarity=0.046  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .|..+|=.|++ |+.+.++|..+ ..+.+|+.+|.++..++.+.+.++..+ .++.++..|.++...-  ... ......
T Consensus        10 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v--~~~~~~~~~~   85 (264)
T 3ucx_A           10 TDKVVVISGVG-PALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG-RRALSVGTDITDDAQV--AHLVDETMKA   85 (264)
T ss_dssp             TTCEEEEESCC-TTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHH--HHHHHHHHHH
T ss_pred             CCcEEEEECCC-cHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHH--HHHHHHHHHH
Confidence            46778877765 55666666544 345689999999999999988888776 3588888998765210  000 000011


Q ss_pred             ccCccEEEEcC
Q psy17793        163 KESFDRILLDA  173 (397)
Q Consensus       163 ~~~fD~Il~Dp  173 (397)
                      -+..|.++.++
T Consensus        86 ~g~id~lv~nA   96 (264)
T 3ucx_A           86 YGRVDVVINNA   96 (264)
T ss_dssp             TSCCSEEEECC
T ss_pred             cCCCcEEEECC
Confidence            25789999876

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=90.62  E-value=0.31  Score=46.92  Aligned_cols=51  Identities=20%  Similarity=0.270  Sum_probs=36.4

Q ss_pred             cCCCCCCeEEEEcCC--CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         81 LDVQPGQKVLDMCAA--PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        81 L~~~~g~~VLDlcag--pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      ..+++|++||-.|+|  .|..+++++.... +.+|+++|.++++++.++    ++|.+
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~-Ga~Vi~~~~~~~~~~~~~----~~g~~  218 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAK----RAGAD  218 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHH----HHTCS
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HhCCC
Confidence            357899999999987  3344555555541 358999999999987764    35754

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=90.59  E-value=3.5  Score=37.50  Aligned_cols=86  Identities=13%  Similarity=0.114  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .|..||=.|+ +|+.+.++|..+ ..+.+|+.++.+...++.+.+.+...+ .++.++..|.++...-  ... ......
T Consensus        28 ~~k~vlITGa-s~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v--~~~~~~~~~~  103 (262)
T 3rkr_A           28 SGQVAVVTGA-SRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG-GEAESHACDLSHSDAI--AAFATGVLAA  103 (262)
T ss_dssp             TTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHH--HHHHHHHHHH
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC-CceeEEEecCCCHHHH--HHHHHHHHHh
Confidence            4667776665 577888777654 345689999999999999988888776 3588889998765210  000 000011


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      .+..|.++.++-
T Consensus       104 ~g~id~lv~~Ag  115 (262)
T 3rkr_A          104 HGRCDVLVNNAG  115 (262)
T ss_dssp             HSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            247899998664

>3r90_A Malignant T cell-amplified sequence 1; structural genomics consortium, surface entropy reduction, S binding protein; 1.70A {Homo sapiens}

Probab=90.11  E-value=0.16  Score=45.34  Aligned_cols=30  Identities=27%  Similarity=0.344  Sum_probs=27.4

Q ss_pred             CeEEEechhhhhhhhcccceecccccccCC
Q psy17793        345 PVQIIVDQPCALAVLRGADVFAPGVLAMPL  374 (397)
Q Consensus       345 ~~~v~vd~~c~~a~LrGa~v~~pg~~~~~~  374 (397)
                      ...|.||..+..++++||++++|||+....
T Consensus        92 lp~v~Vd~~av~~v~~GA~Lm~PGv~~~~~  121 (188)
T 3r90_A           92 LPHQQVDKGAIKFVLSGANIMCPGLTSPGA  121 (188)
T ss_dssp             SCEEEECGGGHHHHTTTCCEETHHHHSTTC
T ss_pred             CCEEEEChhHHHHhhcCCccccCeEEccCC
Confidence            347899999999999999999999999886

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=90.02  E-value=1  Score=43.18  Aligned_cols=51  Identities=29%  Similarity=0.384  Sum_probs=38.2

Q ss_pred             cCCCCCCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPGQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      .++++|++||-.|+  |.|..++++|...  +.+|+++|.++++++.++    ++|.+.
T Consensus       162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~----~~ga~~  214 (343)
T 2eih_A          162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAK----ALGADE  214 (343)
T ss_dssp             SCCCTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HHTCSE
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----hcCCCE
Confidence            35789999999998  4456666777654  358999999999988775    357653

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=89.94  E-value=3.4  Score=37.89  Aligned_cols=86  Identities=14%  Similarity=0.061  Sum_probs=53.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDK-SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~-s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|.++|=.|++ |+.+.++|..+ ..+.+|+.++. +....+.+.+.++..+ .++.++..|.++...-. ..+....  
T Consensus        17 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~--   92 (270)
T 3is3_A           17 DGKVALVTGSG-RGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG-SDAIAIKADIRQVPEIVKLFDQAVA--   92 (270)
T ss_dssp             TTCEEEESCTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHH--
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHH--
Confidence            46677766654 66777777654 34567887765 5677788888787776 35788889987652100 0000001  


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+..|.++.++-
T Consensus        93 ~~g~id~lvnnAg  105 (270)
T 3is3_A           93 HFGHLDIAVSNSG  105 (270)
T ss_dssp             HHSCCCEEECCCC
T ss_pred             HcCCCCEEEECCC
Confidence            1147899998664

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=89.89  E-value=2.1  Score=38.80  Aligned_cols=86  Identities=13%  Similarity=0.110  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDK-SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~-s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~  161 (397)
                      .+.+||=.| |+|+.+.+++..+. .+.+|++++. ++..++.+.+.++..+. ++.++..|..+...-  ... .....
T Consensus        20 ~~k~vlItG-asggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~--~~~~~~~~~   95 (274)
T 1ja9_A           20 AGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEV--VALFDKAVS   95 (274)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHH--HHHHHHHHH
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEEecCCCHHHH--HHHHHHHHH
Confidence            356777555 56888888887553 4568999998 88888887777777663 578888898764210  000 00000


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+.+|.|+.++-
T Consensus        96 ~~~~~d~vi~~Ag  108 (274)
T 1ja9_A           96 HFGGLDFVMSNSG  108 (274)
T ss_dssp             HHSCEEEEECCCC
T ss_pred             HcCCCCEEEECCC
Confidence            1146899998664

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=89.84  E-value=4.5  Score=37.25  Aligned_cols=86  Identities=10%  Similarity=0.002  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDK-SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~-s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|..+|=.|++ |+.+.++|..+ ..+.+|+.++. +..+.+.+.+.++..|. ++.++..|.++...-. ..+....  
T Consensus        30 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~--  105 (271)
T 3v2g_A           30 AGKTAFVTGGS-RGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGG-RAVAIRADNRDAEAIEQAIRETVE--  105 (271)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHH--
Confidence            46778877765 66777777654 34567888755 56778888777777764 5788889987652100 0000001  


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+..|.++.++-
T Consensus       106 ~~g~iD~lvnnAg  118 (271)
T 3v2g_A          106 ALGGLDILVNSAG  118 (271)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCCcEEEECCC
Confidence            1247899998764

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=89.72  E-value=4.3  Score=36.36  Aligned_cols=85  Identities=15%  Similarity=0.186  Sum_probs=56.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~  163 (397)
                      +.++|=.| |+|+.+.+++..+ ..+.+|+.++.++..++.+.+.++..+. ++.++..|..+...-  ... .......
T Consensus         5 ~k~vlITG-as~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~--~~~~~~~~~~~   80 (247)
T 3lyl_A            5 EKVALVTG-ASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGF-KARGLVLNISDIESI--QNFFAEIKAEN   80 (247)
T ss_dssp             TCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHH--HHHHHHHHHTT
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHH--HHHHHHHHHHc
Confidence            55677666 5577777777654 3456899999999999999888888764 588888998765210  000 0001122


Q ss_pred             cCccEEEEcCC
Q psy17793        164 ESFDRILLDAP  174 (397)
Q Consensus       164 ~~fD~Il~DpP  174 (397)
                      +.+|.++.++-
T Consensus        81 ~~id~li~~Ag   91 (247)
T 3lyl_A           81 LAIDILVNNAG   91 (247)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            46899998764

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=89.72  E-value=2.6  Score=38.66  Aligned_cols=87  Identities=11%  Similarity=0.106  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKK-LQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~-~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|.+||=.|+ +|+.+.++|..+ ..+.+|+.++.++..++.+.+.+.. .+ .++.++..|..+...-. ..+.-..  
T Consensus        19 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~--   94 (266)
T 4egf_A           19 DGKRALITGA-TKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG-TDVHTVAIDLAEPDAPAELARRAAE--   94 (266)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTSTTHHHHHHHHHHH--
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHH--
Confidence            3667776665 567777777654 3456899999999999888777766 44 46888999987653100 0000001  


Q ss_pred             cccCccEEEEcCCC
Q psy17793        162 QKESFDRILLDAPC  175 (397)
Q Consensus       162 ~~~~fD~Il~DpPC  175 (397)
                      .-+..|.++.++--
T Consensus        95 ~~g~id~lv~nAg~  108 (266)
T 4egf_A           95 AFGGLDVLVNNAGI  108 (266)
T ss_dssp             HHTSCSEEEEECCC
T ss_pred             HcCCCCEEEECCCc
Confidence            12478999997743

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=89.66  E-value=4.2  Score=37.39  Aligned_cols=87  Identities=9%  Similarity=0.088  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEEcccccccccc-hhhHHHhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLS--SIQTHVYDSTRINTSS-QIDIERMK  160 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~--~v~~~~~D~~~~~~~~-~~d~~~~~  160 (397)
                      .|.+||=.|+ +|+.+.++|..+ ..+.+|+.+|.++..++.+.+.++..+..  ++.++..|.++...-. ..+.... 
T Consensus        10 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-   87 (281)
T 3svt_A           10 QDRTYLVTGG-GSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA-   87 (281)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH-
Confidence            3667777775 567777777654 34578999999999999888888877653  5888889987652100 0000001 


Q ss_pred             hcccCccEEEEcCC
Q psy17793        161 LQKESFDRILLDAP  174 (397)
Q Consensus       161 ~~~~~fD~Il~DpP  174 (397)
                       .-+.+|.++.++-
T Consensus        88 -~~g~id~lv~nAg  100 (281)
T 3svt_A           88 -WHGRLHGVVHCAG  100 (281)
T ss_dssp             -HHSCCCEEEECCC
T ss_pred             -HcCCCCEEEECCC
Confidence             1257899998764

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=89.61  E-value=2.7  Score=38.97  Aligned_cols=87  Identities=11%  Similarity=0.046  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .|..+|=.|+ +|+.+.++|..+ ..+.+|+.+|.++..++.+.+.+...+-..+.++..|.++...-. ..+.-..  .
T Consensus        32 ~gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~  108 (281)
T 4dry_A           32 EGRIALVTGG-GTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRA--E  108 (281)
T ss_dssp             --CEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHH--H
Confidence            3667776664 577787777654 345789999999999988888777666555688899987652100 0000001  1


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.++.++-
T Consensus       109 ~g~iD~lvnnAG  120 (281)
T 4dry_A          109 FARLDLLVNNAG  120 (281)
T ss_dssp             HSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            257899998664

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=89.54  E-value=5  Score=36.66  Aligned_cols=86  Identities=17%  Similarity=0.122  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .+.+||=.| |+|+.+.+++..+ ..+.+|+++|.++..++.+.+.++..+. ++.++..|..+...-  ... ......
T Consensus        30 ~~k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v--~~~~~~~~~~  105 (272)
T 1yb1_A           30 TGEIVLITG-AGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDI--YSSAKKVKAE  105 (272)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHH--HHHHHHHHHH
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCC-eEEEEEeeCCCHHHH--HHHHHHHHHH
Confidence            356777666 5577888888654 3456899999999998888877777663 688888998764210  000 000011


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.|+.++-
T Consensus       106 ~g~iD~li~~Ag  117 (272)
T 1yb1_A          106 IGDVSILVNNAG  117 (272)
T ss_dssp             TCCCSEEEECCC
T ss_pred             CCCCcEEEECCC
Confidence            247899998764

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=89.26  E-value=2.9  Score=38.02  Aligned_cols=86  Identities=12%  Similarity=0.012  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .|.++|=.|++ |+.+.++|..+ ..+.+|+.+|.+...++.+.+.++..+ .++.++..|..+...-. ..+.-..  .
T Consensus        11 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~--~   86 (256)
T 3gaf_A           11 NDAVAIVTGAA-AGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG-GKAIGLECNVTDEQHREAVIKAALD--Q   86 (256)
T ss_dssp             TTCEEEECSCS-SHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHH--H
Confidence            36677766654 66777777644 345689999999999999888888776 35788889987652100 0000001  1


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+..|.++.++-
T Consensus        87 ~g~id~lv~nAg   98 (256)
T 3gaf_A           87 FGKITVLVNNAG   98 (256)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            147899998764

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=89.22  E-value=4.5  Score=36.68  Aligned_cols=87  Identities=7%  Similarity=0.034  Sum_probs=55.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .|.+||=.|+ +|+.+.+++..+ ..+.+|++++.++..++.+.+.++..+ .++.++..|.++...-. ..+.....+ 
T Consensus         8 ~~k~vlVTGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~-   84 (260)
T 2ae2_A            8 EGCTALVTGG-SRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG-FKVEASVCDLSSRSERQELMNTVANHF-   84 (260)
T ss_dssp             TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHT-
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            3667776665 577777777654 345689999999998888777776655 35788888987642100 000000001 


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      .+.+|.++.++-
T Consensus        85 ~g~id~lv~~Ag   96 (260)
T 2ae2_A           85 HGKLNILVNNAG   96 (260)
T ss_dssp             TTCCCEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence            157899998764

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=89.20  E-value=4.2  Score=38.43  Aligned_cols=87  Identities=10%  Similarity=0.011  Sum_probs=58.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|.+||=.|++ |+.+.+++..+ ..+.+|++++.++..++.+.+.++..+.. ++.++..|.++...-. ..+.-  ..
T Consensus         7 ~~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~--~~   83 (319)
T 3ioy_A            7 AGRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEV--EA   83 (319)
T ss_dssp             TTCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHH--HH
T ss_pred             CCCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHH--HH
Confidence            46678877755 66777777654 34568999999999999998888877643 5888999987642100 00000  00


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+.+|.++.++-
T Consensus        84 ~~g~id~lv~nAg   96 (319)
T 3ioy_A           84 RFGPVSILCNNAG   96 (319)
T ss_dssp             HTCCEEEEEECCC
T ss_pred             hCCCCCEEEECCC
Confidence            1247899999774

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=89.13  E-value=4.9  Score=36.22  Aligned_cols=85  Identities=9%  Similarity=0.064  Sum_probs=55.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~~  163 (397)
                      |..+|=.|+ +|+.+.+++..+ ..+.+|+.++.++..++.+.+.++..+. ++.++..|..+...-. ..+.....  -
T Consensus         7 ~k~~lVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~--~   82 (247)
T 2jah_A            7 GKVALITGA-SSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGA-KVHVLELDVADRQGVDAAVASTVEA--L   82 (247)
T ss_dssp             TCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH--H
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHH--c
Confidence            567777775 477777777654 3456899999999998888777776653 5788889987642100 00000011  1


Q ss_pred             cCccEEEEcCC
Q psy17793        164 ESFDRILLDAP  174 (397)
Q Consensus       164 ~~fD~Il~DpP  174 (397)
                      +.+|.++.++-
T Consensus        83 g~id~lv~nAg   93 (247)
T 2jah_A           83 GGLDILVNNAG   93 (247)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47899998764

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=89.06  E-value=2.5  Score=39.08  Aligned_cols=85  Identities=15%  Similarity=0.137  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .|..+|=.|+ +|+.+.++|..+ ..+.+|+.+|.++..++.+.+.++..+ .++.++..|..+...-  .+. ......
T Consensus        32 ~gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~~--~~~~~~~~~~  107 (275)
T 4imr_A           32 RGRTALVTGS-SRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG-GTAQELAGDLSEAGAG--TDLIERAEAI  107 (275)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT-CCEEEEECCTTSTTHH--HHHHHHHHHH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEecCCCHHHH--HHHHHHHHHh
Confidence            3667776664 567777777654 345689999999999888888887766 3588888998765210  000 000111


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                       +.+|.++.++-
T Consensus       108 -g~iD~lvnnAg  118 (275)
T 4imr_A          108 -APVDILVINAS  118 (275)
T ss_dssp             -SCCCEEEECCC
T ss_pred             -CCCCEEEECCC
Confidence             57999998764

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=88.93  E-value=3.9  Score=37.61  Aligned_cols=85  Identities=14%  Similarity=0.107  Sum_probs=55.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~  163 (397)
                      +.++|=.|++ |+.+.++|..+ ..+.+|+.++.++.+++.+.+.++..+. ++.++..|.++...-  ... ......-
T Consensus         4 ~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v--~~~~~~~~~~~   79 (264)
T 3tfo_A            4 DKVILITGAS-GGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGG-TALAQVLDVTDRHSV--AAFAQAAVDTW   79 (264)
T ss_dssp             TCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHH--HHHHHHHHHHH
T ss_pred             CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHH--HHHHHHHHHHc
Confidence            5566666654 67777777654 3457899999999999998888887763 577888898764210  000 0000112


Q ss_pred             cCccEEEEcCC
Q psy17793        164 ESFDRILLDAP  174 (397)
Q Consensus       164 ~~fD~Il~DpP  174 (397)
                      +..|.++.++-
T Consensus        80 g~iD~lVnnAG   90 (264)
T 3tfo_A           80 GRIDVLVNNAG   90 (264)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47899998764

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=88.85  E-value=4.5  Score=37.65  Aligned_cols=86  Identities=9%  Similarity=0.000  Sum_probs=53.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCC--HHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKS--KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMK  160 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s--~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~  160 (397)
                      .|.++|=.|+ +|+.+.++|..+ ..+.+|+.++.+  ....+.+.+.++..| .++.++..|..+...-  ... ....
T Consensus        48 ~~k~vlVTGa-s~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v--~~~~~~~~  123 (294)
T 3r3s_A           48 KDRKALVTGG-DSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG-RKAVLLPGDLSDESFA--RSLVHKAR  123 (294)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT-CCEEECCCCTTSHHHH--HHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC-CcEEEEEecCCCHHHH--HHHHHHHH
Confidence            4667887775 567777777654 345688888886  456677777777776 3578888888764210  000 0000


Q ss_pred             hcccCccEEEEcCC
Q psy17793        161 LQKESFDRILLDAP  174 (397)
Q Consensus       161 ~~~~~fD~Il~DpP  174 (397)
                      ..-+.+|.++.++-
T Consensus       124 ~~~g~iD~lv~nAg  137 (294)
T 3r3s_A          124 EALGGLDILALVAG  137 (294)
T ss_dssp             HHHTCCCEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence            11257899998764

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=88.75  E-value=5.6  Score=36.41  Aligned_cols=87  Identities=9%  Similarity=0.053  Sum_probs=55.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .|..+|=.|+ +|+.+.+++..+ ..+.+|++++.++..++.+.+.++..+. ++.++..|..+...-. ..+.-...+ 
T Consensus        20 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~-   96 (273)
T 1ae1_A           20 KGTTALVTGG-SKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVF-   96 (273)
T ss_dssp             TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT-
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHc-
Confidence            3667777775 577777777654 3456899999999988887777766653 5788888987642100 000000011 


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      .+.+|.++.++-
T Consensus        97 ~g~id~lv~nAg  108 (273)
T 1ae1_A           97 DGKLNILVNNAG  108 (273)
T ss_dssp             TSCCCEEEECCC
T ss_pred             CCCCcEEEECCC
Confidence            157899998764

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=88.69  E-value=2.7  Score=38.90  Aligned_cols=86  Identities=13%  Similarity=0.085  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .|.++|=.|++ |+.+.++|..+ ..+.+|+.++.++..++.+.+.++..+. ++.++..|.++...-. ..+.-..  .
T Consensus        31 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~--~  106 (276)
T 3r1i_A           31 SGKRALITGAS-TGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGG-KALPIRCDVTQPDQVRGMLDQMTG--E  106 (276)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHH--H
Confidence            46777766655 67777777654 3456899999999999988888887764 5778888987652100 0000001  1


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.++.++-
T Consensus       107 ~g~iD~lvnnAg  118 (276)
T 3r1i_A          107 LGGIDIAVCNAG  118 (276)
T ss_dssp             HSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            147999999764

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=88.68  E-value=5.4  Score=36.54  Aligned_cols=86  Identities=19%  Similarity=0.173  Sum_probs=54.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeC-------------CHHHHHHHHHHHHHhCCCcEEEEEcccccccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDK-------------SKPRVTKLEETIKKLQLSSIQTHVYDSTRINT  150 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~-------------s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~  150 (397)
                      .|..+|=.|++ |+.+.++|..+ ..+.+|+.+|.             +...++.+.+.++..+ .++.++..|..+...
T Consensus        10 ~~k~~lVTGas-~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~   87 (277)
T 3tsc_A           10 EGRVAFITGAA-RGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN-RRIVAAVVDTRDFDR   87 (277)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHH
T ss_pred             CCCEEEEECCc-cHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHH
Confidence            46677766655 66677777644 34678999998             6778887777777766 357888899876521


Q ss_pred             cc-hhhHHHhhhcccCccEEEEcCC
Q psy17793        151 SS-QIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       151 ~~-~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                      -. ..+....  .-+..|.++.++-
T Consensus        88 v~~~~~~~~~--~~g~id~lvnnAg  110 (277)
T 3tsc_A           88 LRKVVDDGVA--ALGRLDIIVANAG  110 (277)
T ss_dssp             HHHHHHHHHH--HHSCCCEEEECCC
T ss_pred             HHHHHHHHHH--HcCCCCEEEECCC
Confidence            00 0000001  1157999998764

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=88.67  E-value=0.58  Score=43.95  Aligned_cols=70  Identities=17%  Similarity=0.167  Sum_probs=46.9

Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccc
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEE  243 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eE  243 (397)
                      ++||+|++|..   +    ..+.    .+. +..++-+..-..+-..           |+.+|+|||.++....-+...-
T Consensus       210 grYDlVfvNv~---T----pyR~----HHY-QQCeDHA~~l~mL~~~-----------al~~L~pGGtlv~~aYGyADR~  266 (324)
T 3trk_A          210 GRYDLVVINIH---T----PFRI----HHY-QQCVDHAMKLQMLGGD-----------SLRLLKPGGSLLIRAYGYADRT  266 (324)
T ss_dssp             CCEEEEEEECC---C----CCCS----SHH-HHHHHHHHHHHHHHHH-----------GGGGEEEEEEEEEEECCCCSHH
T ss_pred             CceeEEEEecC---C----cccc----chH-HHHHHHHHHHHHHHHH-----------HHhhcCCCceEEEEeecccccc
Confidence            78999999875   0    1111    111 3333333332344455           9999999999999988888888


Q ss_pred             cHHHHHHHHHHCC
Q psy17793        244 NEAVIAWILHRHP  256 (397)
Q Consensus       244 nE~vV~~~L~~~~  256 (397)
                      .|.+|..+.+++.
T Consensus       267 SE~vV~alARkF~  279 (324)
T 3trk_A          267 SERVICVLGRKFR  279 (324)
T ss_dssp             HHHHHHHHHTTEE
T ss_pred             hHHHHHHHHhhhe
Confidence            8889988776653

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=88.57  E-value=1.6  Score=41.56  Aligned_cols=50  Identities=20%  Similarity=0.240  Sum_probs=35.9

Q ss_pred             cCCCCCCeEEEEcCC--CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         81 LDVQPGQKVLDMCAA--PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        81 L~~~~g~~VLDlcag--pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      ..+++|++||-.|++  -|..++++|...  +.+|+++|.++++++.++    ++|.+
T Consensus       144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~----~~ga~  195 (334)
T 3qwb_A          144 YHVKKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAK----EYGAE  195 (334)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTCS
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----HcCCc
Confidence            367899999998843  344555666654  458999999999988664    46754

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=88.57  E-value=0.95  Score=44.40  Aligned_cols=70  Identities=16%  Similarity=0.051  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEEcccccccccchhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS--IQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~--v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .+.+||.++.+-|..|+.++..     .++.+.-|--....++.|++++|++.  +.+..  ....             .
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~--~~~~-------------~   97 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDESSVKFLD--STAD-------------Y   97 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEE--TTSC-------------C
T ss_pred             CCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCccceEecc--cccc-------------c
Confidence            4568999999999999877642     34555446666678899999999875  44322  2111             2


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      ...||.|++-.|
T Consensus        98 ~~~~~~v~~~lp  109 (375)
T 4dcm_A           98 PQQPGVVLIKVP  109 (375)
T ss_dssp             CSSCSEEEEECC
T ss_pred             ccCCCEEEEEcC
Confidence            357999998666

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=88.53  E-value=4.1  Score=37.52  Aligned_cols=84  Identities=14%  Similarity=0.129  Sum_probs=56.4

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~  163 (397)
                      |.+||=.| |+|+.+.+++..+ ..+.+|++++.++..++.+.+.++..+..++.++..|.++...-  ... .......
T Consensus        28 ~k~vlITG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v--~~~~~~~~~~~  104 (286)
T 1xu9_A           28 GKKVIVTG-ASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFA--EQFVAQAGKLM  104 (286)
T ss_dssp             TCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHH--HHHHHHHHHHH
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHH--HHHHHHHHHHc
Confidence            66777666 5577888777644 34568999999999998888877777765788889998764210  000 0000011


Q ss_pred             cCccEEEEc
Q psy17793        164 ESFDRILLD  172 (397)
Q Consensus       164 ~~fD~Il~D  172 (397)
                      +.+|.++.+
T Consensus       105 g~iD~li~n  113 (286)
T 1xu9_A          105 GGLDMLILN  113 (286)
T ss_dssp             TSCSEEEEC
T ss_pred             CCCCEEEEC
Confidence            479999987

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=88.52  E-value=4.1  Score=37.44  Aligned_cols=86  Identities=16%  Similarity=0.110  Sum_probs=55.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeC-------------CHHHHHHHHHHHHHhCCCcEEEEEcccccccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDK-------------SKPRVTKLEETIKKLQLSSIQTHVYDSTRINT  150 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~-------------s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~  150 (397)
                      .|..+|=.|++ |+.+.++|..+ ..+.+|+.+|.             +++.++.+.+.++..+ .++.++..|.++...
T Consensus        14 ~gk~~lVTGas-~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~   91 (280)
T 3pgx_A           14 QGRVAFITGAA-RGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG-RKALTRVLDVRDDAA   91 (280)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT-CCEEEEECCTTCHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHH
Confidence            46777777765 66777777654 34678999998             7888888887777766 357888889876421


Q ss_pred             cchhhH-HHhhhcccCccEEEEcCC
Q psy17793        151 SSQIDI-ERMKLQKESFDRILLDAP  174 (397)
Q Consensus       151 ~~~~d~-~~~~~~~~~fD~Il~DpP  174 (397)
                      -  ... ......-+..|.++.++-
T Consensus        92 v--~~~~~~~~~~~g~id~lvnnAg  114 (280)
T 3pgx_A           92 L--RELVADGMEQFGRLDVVVANAG  114 (280)
T ss_dssp             H--HHHHHHHHHHHCCCCEEEECCC
T ss_pred             H--HHHHHHHHHHcCCCCEEEECCC
Confidence            0  000 000011247899998764

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=88.43  E-value=0.55  Score=44.47  Aligned_cols=45  Identities=16%  Similarity=0.139  Sum_probs=32.9

Q ss_pred             CCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         86 GQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        86 g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      |+ ||=.|+  +.|..++++|..+  +.+|++++.++++++.+++    +|.+.
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~  194 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKL--GYQVAAVSGRESTHGYLKS----LGANR  194 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH----HTCSE
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCE
Confidence            45 887775  3466677777765  3489999999999887754    68764

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=88.40  E-value=5.2  Score=36.75  Aligned_cols=87  Identities=11%  Similarity=0.013  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .|..+|=.|++ |+.+.++|..+ ..+.+|+.++.+...++.+.+.+....-.++.++..|.++...-. ..+.-..  .
T Consensus        26 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~  102 (277)
T 4fc7_A           26 RDKVAFITGGG-SGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALK--E  102 (277)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH--H
Confidence            46777877754 67777777654 445689999999988887766665432246888899987652100 0000001  1


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.++.++-
T Consensus       103 ~g~id~lv~nAg  114 (277)
T 4fc7_A          103 FGRIDILINCAA  114 (277)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            157999998764

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=88.25  E-value=2.3  Score=40.93  Aligned_cols=50  Identities=16%  Similarity=0.063  Sum_probs=35.3

Q ss_pred             cCCCCCCeEEEEcCC--CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         81 LDVQPGQKVLDMCAA--PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        81 L~~~~g~~VLDlcag--pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      .++++|++||-.|++  .|..+.++|...  +.+|+++|.++++++.+    +++|..
T Consensus       166 ~~~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~----~~~ga~  217 (351)
T 1yb5_A          166 ACVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIV----LQNGAH  217 (351)
T ss_dssp             SCCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHH----HHTTCS
T ss_pred             hCCCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHH----HHcCCC
Confidence            457899999999973  244445555543  45899999999988755    456764

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=88.21  E-value=4.1  Score=37.52  Aligned_cols=86  Identities=12%  Similarity=0.081  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .+..+|=.| |+|+.+.++|..+ ..+.+|+.++.++..++.+.+.++..+. ++..+..|..+...-. ..+....  .
T Consensus        27 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~--~  102 (270)
T 3ftp_A           27 DKQVAIVTG-ASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGL-EGRGAVLNVNDATAVDALVESTLK--E  102 (270)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTC-CCEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEEeCCCHHHHHHHHHHHHH--H
Confidence            366677655 5577777777654 3456899999999999999888888774 4677788887642100 0000001  1


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+..|.++.++-
T Consensus       103 ~g~iD~lvnnAg  114 (270)
T 3ftp_A          103 FGALNVLVNNAG  114 (270)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            247899998764

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=88.18  E-value=6.1  Score=36.45  Aligned_cols=86  Identities=7%  Similarity=0.018  Sum_probs=55.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKL-QLSSIQTHVYDSTRINTSSQIDI-ERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~-g~~~v~~~~~D~~~~~~~~~~d~-~~~~~  161 (397)
                      .|.+||=.|+ +|+.+.+++..+ ..+.+|++++.++..++.+.+.++.. + .++.++.+|..+...-  ... .....
T Consensus        25 ~~k~vlITGa-sggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~--~~~~~~~~~  100 (302)
T 1w6u_A           25 QGKVAFITGG-GTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG-NKVHAIQCDVRDPDMV--QNTVSELIK  100 (302)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHH--HHHHHHHHH
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-CceEEEEeCCCCHHHH--HHHHHHHHH
Confidence            3567776664 577888887654 34568999999999888777666654 4 3588889998764210  000 00001


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      ..+.+|.|+.++-
T Consensus       101 ~~g~id~li~~Ag  113 (302)
T 1w6u_A          101 VAGHPNIVINNAA  113 (302)
T ss_dssp             HTCSCSEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            1247899998664

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=88.09  E-value=6.3  Score=35.15  Aligned_cols=90  Identities=12%  Similarity=0.152  Sum_probs=57.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .|..+|=.|+ +|+.+.+++..+ ..+.+|+.++.++..++.+.+.++..+..++.++..|............ ......
T Consensus        13 ~~k~vlITGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           13 KGRVILVTGA-ARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            4667776665 577787777654 3456899999999999999998888876667777777632110000000 000011


Q ss_pred             ccCccEEEEcCCC
Q psy17793        163 KESFDRILLDAPC  175 (397)
Q Consensus       163 ~~~fD~Il~DpPC  175 (397)
                      -+.+|.++.++-.
T Consensus        92 ~g~id~lv~nAg~  104 (247)
T 3i1j_A           92 FGRLDGLLHNASI  104 (247)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2478999997754

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=87.98  E-value=6.1  Score=35.69  Aligned_cols=87  Identities=15%  Similarity=0.161  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccc--ccccccchhhH-HHhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDS--TRINTSSQIDI-ERMK  160 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~--~~~~~~~~~d~-~~~~  160 (397)
                      .|..+|=.|+ +|+.+.++|..+ ..+.+|+.+|.++..++.+.+.+...+...+.++..|.  .+...  .... ....
T Consensus        11 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~--~~~~~~~~~   87 (252)
T 3f1l_A           11 NDRIILVTGA-SDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSEN--CQQLAQRIA   87 (252)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHH--HHHHHHHHH
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHH--HHHHHHHHH
Confidence            4667776665 466777777654 34578999999999999888888776655678888888  43210  0000 0001


Q ss_pred             hcccCccEEEEcCC
Q psy17793        161 LQKESFDRILLDAP  174 (397)
Q Consensus       161 ~~~~~fD~Il~DpP  174 (397)
                      ..-+..|.++.++-
T Consensus        88 ~~~g~id~lv~nAg  101 (252)
T 3f1l_A           88 VNYPRLDGVLHNAG  101 (252)
T ss_dssp             HHCSCCSEEEECCC
T ss_pred             HhCCCCCEEEECCc
Confidence            11257899998764

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=87.95  E-value=5.5  Score=35.97  Aligned_cols=85  Identities=16%  Similarity=0.101  Sum_probs=54.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~  163 (397)
                      +..+|=.| |+|+.+.+++..+ ..+.+|++++.++..++.+.+.++..+ .++.++..|..+...-  ... ......-
T Consensus         2 ~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v--~~~~~~~~~~~   77 (256)
T 1geg_A            2 KKVALVTG-AGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG-GHAVAVKVDVSDRDQV--FAAVEQARKTL   77 (256)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHH--HHHHHHHHHHT
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHH--HHHHHHHHHHh
Confidence            34566555 5577787777654 345689999999998888877777665 3578888898764210  000 0000012


Q ss_pred             cCccEEEEcCC
Q psy17793        164 ESFDRILLDAP  174 (397)
Q Consensus       164 ~~fD~Il~DpP  174 (397)
                      +.+|.++.++-
T Consensus        78 g~id~lv~nAg   88 (256)
T 1geg_A           78 GGFDVIVNNAG   88 (256)
T ss_dssp             TCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47999998764

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=87.92  E-value=6  Score=36.06  Aligned_cols=84  Identities=12%  Similarity=0.083  Sum_probs=55.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .|.++|=.|+ +|+.+.++|..+ ..+.+|+.+|.++..++.+.+.+...+. ..+..+..|..+..     +.......
T Consensus         9 ~~k~~lVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~-----~~~~~~~~   82 (267)
T 3t4x_A            9 KGKTALVTGS-TAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQ-----GCQDVIEK   82 (267)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHH-----HHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHH-----HHHHHHHh
Confidence            3667776665 577777777654 3457899999999999888877776643 34777888886542     10111111


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+..|.++.++-
T Consensus        83 ~g~id~lv~nAg   94 (267)
T 3t4x_A           83 YPKVDILINNLG   94 (267)
T ss_dssp             CCCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            257899998764

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=87.85  E-value=5.4  Score=37.23  Aligned_cols=87  Identities=16%  Similarity=0.217  Sum_probs=56.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEEcccccccccc-hhhHHHhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLS--SIQTHVYDSTRINTSS-QIDIERMK  160 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~--~v~~~~~D~~~~~~~~-~~d~~~~~  160 (397)
                      .+..+|=.| |+|+.+.+++..+ ..+.+|++++.++..++.+.+.+...+..  ++.++..|..+...-. ..+.....
T Consensus        25 ~~k~vlVTG-as~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           25 SGKSVIITG-SSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            356677655 5577787777654 34568999999999988887777766542  5888889987642100 00000011


Q ss_pred             hcccCccEEEEcCC
Q psy17793        161 LQKESFDRILLDAP  174 (397)
Q Consensus       161 ~~~~~fD~Il~DpP  174 (397)
                      +  +.+|.++.++-
T Consensus       104 ~--g~iD~lvnnAG  115 (297)
T 1xhl_A          104 F--GKIDILVNNAG  115 (297)
T ss_dssp             H--SCCCEEEECCC
T ss_pred             c--CCCCEEEECCC
Confidence            1  47899998764

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=87.79  E-value=4.2  Score=37.72  Aligned_cols=87  Identities=16%  Similarity=0.090  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .+..+|=.|++ |+.+.++|..+ ..+.+|+.+|.+...++.+.+.+...+ .++.++..|..+...-. ..+....  .
T Consensus        27 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~--~  102 (283)
T 3v8b_A           27 PSPVALITGAG-SGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG-GQAIALEADVSDELQMRNAVRDLVL--K  102 (283)
T ss_dssp             CCCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT-CCEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHH--H
Confidence            46677777755 66777777644 345789999999999888887776655 35788889987642100 0000001  1


Q ss_pred             ccCccEEEEcCCC
Q psy17793        163 KESFDRILLDAPC  175 (397)
Q Consensus       163 ~~~fD~Il~DpPC  175 (397)
                      -+.+|.++.++--
T Consensus       103 ~g~iD~lVnnAg~  115 (283)
T 3v8b_A          103 FGHLDIVVANAGI  115 (283)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCCEEEECCCC
Confidence            2579999987643

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=87.75  E-value=4.7  Score=36.10  Aligned_cols=82  Identities=15%  Similarity=0.171  Sum_probs=52.5

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .++.+||=.|+ +|+.+.++|..+ ..+.+|+.++.++..++.+.+.+.    .++.+...|..+...     ....-..
T Consensus        12 ~~~k~vlVTGa-s~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~-----~~~~~~~   81 (249)
T 3f9i_A           12 LTGKTSLITGA-SSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK----DNYTIEVCNLANKEE-----CSNLISK   81 (249)
T ss_dssp             CTTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC----SSEEEEECCTTSHHH-----HHHHHHT
T ss_pred             CCCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc----cCccEEEcCCCCHHH-----HHHHHHh
Confidence            35677786665 577777777654 345689999999988877665442    357888888875421     0001111


Q ss_pred             ccCccEEEEcCCC
Q psy17793        163 KESFDRILLDAPC  175 (397)
Q Consensus       163 ~~~fD~Il~DpPC  175 (397)
                      .+.+|.++.++-.
T Consensus        82 ~~~id~li~~Ag~   94 (249)
T 3f9i_A           82 TSNLDILVCNAGI   94 (249)
T ss_dssp             CSCCSEEEECCC-
T ss_pred             cCCCCEEEECCCC
Confidence            2468999987753

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=87.72  E-value=10  Score=35.08  Aligned_cols=86  Identities=8%  Similarity=0.032  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHH-HHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKP-RVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~-rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|.+||=.|++ |+.+.++|..+ ..+.+|+.++.+.. ..+.+.+.++..+ .++.++..|..+...-. ..+....  
T Consensus        46 ~gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~--  121 (291)
T 3ijr_A           46 KGKNVLITGGD-SGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG-VKCVLLPGDLSDEQHCKDIVQETVR--  121 (291)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT-CCEEEEESCTTSHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHH--
Confidence            46778877755 66777777654 34568999998865 4555555556555 35888899987642100 0000001  


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+.+|.++.++-
T Consensus       122 ~~g~iD~lvnnAg  134 (291)
T 3ijr_A          122 QLGSLNILVNNVA  134 (291)
T ss_dssp             HHSSCCEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            1247899998763

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=87.56  E-value=5.3  Score=35.93  Aligned_cols=85  Identities=14%  Similarity=0.132  Sum_probs=54.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDK-SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~-s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      +.+||=.| |+|+.+.+++..+ ..+.+|++++. ++..++.+.+.++..+ .++.++..|..+...-  ... ......
T Consensus         7 ~k~vlITG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~--~~~~~~~~~~   82 (261)
T 1gee_A            7 GKVVVITG-SSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG-GEAIAVKGDVTVESDV--INLVQSAIKE   82 (261)
T ss_dssp             TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-CEEEEEECCTTSHHHH--HHHHHHHHHH
T ss_pred             CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcC-CceEEEECCCCCHHHH--HHHHHHHHHH
Confidence            56677555 5577888887654 34568999999 8888887777777665 3578888898764210  000 000001


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.|+.++-
T Consensus        83 ~g~id~li~~Ag   94 (261)
T 1gee_A           83 FGKLDVMINNAG   94 (261)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            146899998664

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=87.51  E-value=7  Score=35.60  Aligned_cols=86  Identities=9%  Similarity=0.041  Sum_probs=51.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCC---HHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKS---KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERM  159 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s---~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~  159 (397)
                      .|.++|=.|++ |+.+.++|..+. .+.+|+.++.+   .++++.+.+.++..| .++.++..|.++...-. ..+.-..
T Consensus        10 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~   87 (262)
T 3ksu_A           10 KNKVIVIAGGI-KNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG-AKVALYQSDLSNEEEVAKLFDFAEK   87 (262)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT-CEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            46678877755 667877887653 45678887664   455666666665555 35888889987652100 0000001


Q ss_pred             hhcccCccEEEEcCC
Q psy17793        160 KLQKESFDRILLDAP  174 (397)
Q Consensus       160 ~~~~~~fD~Il~DpP  174 (397)
                        .-+..|.++.++-
T Consensus        88 --~~g~iD~lvnnAg  100 (262)
T 3ksu_A           88 --EFGKVDIAINTVG  100 (262)
T ss_dssp             --HHCSEEEEEECCC
T ss_pred             --HcCCCCEEEECCC
Confidence              1147899998664

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=87.49  E-value=2.8  Score=39.68  Aligned_cols=50  Identities=22%  Similarity=0.250  Sum_probs=36.0

Q ss_pred             cCCCCCCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         81 LDVQPGQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        81 L~~~~g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      .++++|++||-.|+  |-|..+.+++...  +.+|+++|.++++++.+++    +|.+
T Consensus       141 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~g~~  192 (333)
T 1wly_A          141 HKVKPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARK----LGCH  192 (333)
T ss_dssp             SCCCTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCS
T ss_pred             hCCCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCC
Confidence            45789999998885  3445555566553  4589999999988887754    5654

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=87.48  E-value=4.6  Score=36.56  Aligned_cols=87  Identities=15%  Similarity=0.097  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHh--CCCcEEEEEcccccccccc-hhhHHHhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKL--QLSSIQTHVYDSTRINTSS-QIDIERMK  160 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~--g~~~v~~~~~D~~~~~~~~-~~d~~~~~  160 (397)
                      .+..+|=.|++ |+.+.++|..+ ..+.+|+.++.++..++.+.+.+...  +..++.++..|.++...-. ..+.... 
T Consensus         6 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-   83 (250)
T 3nyw_A            6 QKGLAIITGAS-QGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ-   83 (250)
T ss_dssp             CCCEEEEESTT-SHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH-
Confidence            35667766655 66777777654 23568999999999999988888776  3356788889987652100 0000001 


Q ss_pred             hcccCccEEEEcCC
Q psy17793        161 LQKESFDRILLDAP  174 (397)
Q Consensus       161 ~~~~~fD~Il~DpP  174 (397)
                       .-+.+|.++.++-
T Consensus        84 -~~g~iD~lvnnAg   96 (250)
T 3nyw_A           84 -KYGAVDILVNAAA   96 (250)
T ss_dssp             -HHCCEEEEEECCC
T ss_pred             -hcCCCCEEEECCC
Confidence             1247899998664

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=87.45  E-value=7.5  Score=34.37  Aligned_cols=85  Identities=14%  Similarity=0.046  Sum_probs=54.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHH-HhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIK-KLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~-~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      +.++|=.|+ +|+.+.+++..+ ..+.+|+.++.+..+++.+.+.+. ..+ .++.++..|.++...-. ..+.-..  .
T Consensus         2 ~k~vlITGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~--~   77 (235)
T 3l77_A            2 MKVAVITGA-SRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQG-VEVFYHHLDVSKAESVEEFSKKVLE--R   77 (235)
T ss_dssp             CCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTCHHHHHHHCC-HHH--H
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CeEEEEEeccCCHHHHHHHHHHHHH--h
Confidence            455665664 577777777655 345689999999999988877775 444 46888889987652100 0000000  1


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.++.++-
T Consensus        78 ~g~id~li~~Ag   89 (235)
T 3l77_A           78 FGDVDVVVANAG   89 (235)
T ss_dssp             HSSCSEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            147899998764

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=87.39  E-value=8.1  Score=34.57  Aligned_cols=86  Identities=14%  Similarity=0.093  Sum_probs=55.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .+.+||=.| |+|+.+.+++..+ ..+.+|++++.++..++.+.+.++..+ .++.++..|..+...-  ... ......
T Consensus        12 ~~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~--~~~~~~~~~~   87 (260)
T 3awd_A           12 DNRVAIVTG-GAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG-HDVSSVVMDVTNTESV--QNAVRSVHEQ   87 (260)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHH--HHHHHHHHHH
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEecCCCHHHH--HHHHHHHHHH
Confidence            356777666 5577888888754 345689999999998887777777665 3588888998764210  000 000001


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      .+.+|.|+.++-
T Consensus        88 ~~~id~vi~~Ag   99 (260)
T 3awd_A           88 EGRVDILVACAG   99 (260)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            146899998664

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=87.37  E-value=0.55  Score=47.08  Aligned_cols=51  Identities=20%  Similarity=0.168  Sum_probs=37.7

Q ss_pred             cCCCCCCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPGQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      .++++|++||=.||  +-|..++++|..+  +.+|++++.++++++.++    ++|.+.
T Consensus       224 ~~~~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~~~~~~~~~----~lGa~~  276 (456)
T 3krt_A          224 AGMKQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSSPQKAEICR----AMGAEA  276 (456)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HHTCCE
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHH----hhCCcE
Confidence            46789999998886  2355666777764  468899999999988774    468754

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=87.34  E-value=4.7  Score=36.59  Aligned_cols=85  Identities=12%  Similarity=0.130  Sum_probs=55.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~~  163 (397)
                      |.++|=.| |+|+.+.++|..+ ..+.+|+.+|.++..++.+.+.++..+ .++.++..|.++...-. ..+.-..  .-
T Consensus         6 ~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~--~~   81 (257)
T 3imf_A            6 EKVVIITG-GSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP-GQILTVQMDVRNTDDIQKMIEQIDE--KF   81 (257)
T ss_dssp             TCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCST-TCEEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHH--Hc
Confidence            56677656 4577777777654 345689999999999988887776555 35888889987642100 0000001  11


Q ss_pred             cCccEEEEcCC
Q psy17793        164 ESFDRILLDAP  174 (397)
Q Consensus       164 ~~fD~Il~DpP  174 (397)
                      +..|.++.++-
T Consensus        82 g~id~lv~nAg   92 (257)
T 3imf_A           82 GRIDILINNAA   92 (257)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47899998764

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=87.22  E-value=3.8  Score=37.72  Aligned_cols=86  Identities=14%  Similarity=0.138  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .|..+|=.| |+|+.+.++|..+ ..+.+|+.+|.++..++.+.+.++..|. ++.++..|.++...-  ... ......
T Consensus        25 ~gk~~lVTG-as~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v--~~~~~~~~~~  100 (271)
T 4ibo_A           25 GGRTALVTG-SSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGH-DAEAVAFDVTSESEI--IEAFARLDEQ  100 (271)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHH--HHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHH--HHHHHHHHHH
Confidence            366777666 5567777777654 3456899999999999988888877763 578888888765210  000 000011


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      .+..|.++.++-
T Consensus       101 ~g~iD~lv~nAg  112 (271)
T 4ibo_A          101 GIDVDILVNNAG  112 (271)
T ss_dssp             TCCCCEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence            247899998764

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=87.21  E-value=4.4  Score=37.49  Aligned_cols=86  Identities=13%  Similarity=0.036  Sum_probs=57.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .|+.+|=-|++ +|.+..+|..+ ..+.+|+.+|++++.++.+.+.+++.|. ++..+..|.++...-. ..+..  ...
T Consensus         8 ~gKvalVTGas-~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~~~~v~~~~~~~--~~~   83 (255)
T 4g81_D            8 TGKTALVTGSA-RGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY-DAHGVAFDVTDELAIEAAFSKL--DAE   83 (255)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHH--HHT
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHH--HHH
Confidence            47777777766 55666666644 3567999999999999999888888874 5778888887642100 00111  112


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -++.|.++.++-
T Consensus        84 ~G~iDiLVNNAG   95 (255)
T 4g81_D           84 GIHVDILINNAG   95 (255)
T ss_dssp             TCCCCEEEECCC
T ss_pred             CCCCcEEEECCC
Confidence            267899998773

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=87.20  E-value=5.8  Score=37.08  Aligned_cols=83  Identities=10%  Similarity=0.028  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .|+.+|=-|++.| .+..+|..+ ..+.+|+.+|.+++.++.+.   +++|- ++..+..|.++...-. ..+.....+ 
T Consensus        28 ~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~---~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~-  101 (273)
T 4fgs_A           28 NAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAI---AEIGG-GAVGIQADSANLAELDRLYEKVKAEA-  101 (273)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHH---HHHCT-TCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHH---HHcCC-CeEEEEecCCCHHHHHHHHHHHHHHc-
Confidence            4778888887655 566666543 35679999999998877654   44553 4567788887652100 001111122 


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                       ++.|.++.++-
T Consensus       102 -G~iDiLVNNAG  112 (273)
T 4fgs_A          102 -GRIDVLFVNAG  112 (273)
T ss_dssp             -SCEEEEEECCC
T ss_pred             -CCCCEEEECCC
Confidence             67899998774

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=87.19  E-value=0.56  Score=45.28  Aligned_cols=51  Identities=18%  Similarity=0.163  Sum_probs=36.0

Q ss_pred             cCCCCCCeEEEEcCC--CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPGQKVLDMCAA--PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g~~VLDlcag--pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ..+++|++||-.|++  -|..++++|...  +.+|+++|.++++++.+++    +|.+.
T Consensus       163 ~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~  215 (353)
T 4dup_A          163 AGLTEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACER----LGAKR  215 (353)
T ss_dssp             TCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSE
T ss_pred             cCCCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCE
Confidence            457899999987432  345555666654  4589999999999887754    67653

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=87.10  E-value=8.3  Score=35.84  Aligned_cols=86  Identities=17%  Similarity=0.200  Sum_probs=55.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCC------------HHHHHHHHHHHHHhCCCcEEEEEccccccccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKS------------KPRVTKLEETIKKLQLSSIQTHVYDSTRINTS  151 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s------------~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~  151 (397)
                      .|..+|=.|++ |+.+.++|..+ ..+.+|+.+|.+            +..++.+.+.++..+ .++.++..|.++...-
T Consensus        27 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v  104 (299)
T 3t7c_A           27 EGKVAFITGAA-RGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG-RRIIASQVDVRDFDAM  104 (299)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHH
Confidence            46777777765 56677677644 346789999987            777877777777776 3688889998765210


Q ss_pred             c-hhhHHHhhhcccCccEEEEcCC
Q psy17793        152 S-QIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       152 ~-~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                      . ..+....  .-+..|.++.++-
T Consensus       105 ~~~~~~~~~--~~g~iD~lv~nAg  126 (299)
T 3t7c_A          105 QAAVDDGVT--QLGRLDIVLANAA  126 (299)
T ss_dssp             HHHHHHHHH--HHSCCCEEEECCC
T ss_pred             HHHHHHHHH--HhCCCCEEEECCC
Confidence            0 0000001  1257899998764

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=87.08  E-value=7.2  Score=36.24  Aligned_cols=87  Identities=17%  Similarity=0.137  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCC----cEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEEcccccccccchhhH-HH
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDT----GTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHVYDSTRINTSSQIDI-ER  158 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~----~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~~D~~~~~~~~~~d~-~~  158 (397)
                      .|.++|=.|++ |+.+..+|..+...    ..|+.++.+...++.+.+.++... -.++.++..|.++...-  ... ..
T Consensus        32 ~~k~~lVTGas-~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v--~~~~~~  108 (287)
T 3rku_A           32 AKKTVLITGAS-AGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKI--KPFIEN  108 (287)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGH--HHHHHT
T ss_pred             CCCEEEEecCC-ChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHH--HHHHHH
Confidence            36778877754 67777777655222    289999999999998888877653 23588889998765310  000 00


Q ss_pred             hhhcccCccEEEEcCC
Q psy17793        159 MKLQKESFDRILLDAP  174 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpP  174 (397)
                      ....-+.+|.++.++-
T Consensus       109 ~~~~~g~iD~lVnnAG  124 (287)
T 3rku_A          109 LPQEFKDIDILVNNAG  124 (287)
T ss_dssp             SCGGGCSCCEEEECCC
T ss_pred             HHHhcCCCCEEEECCC
Confidence            0011247899998764

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=87.06  E-value=6.3  Score=36.22  Aligned_cols=86  Identities=10%  Similarity=0.018  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHH-HHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPR-VTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~r-l~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|..+|=.|+ +|+.+.+++..+ ..+.+|+.++.+... .+.+.+.++..|. ++.++..|..+...-. ..+.....+
T Consensus        28 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~  105 (283)
T 1g0o_A           28 EGKVALVTGA-GRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKIF  105 (283)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCC-CeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            3566776664 577888787754 345689999988643 5555666666653 5778888887542100 000000111


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                        +.+|.++.++-
T Consensus       106 --g~iD~lv~~Ag  116 (283)
T 1g0o_A          106 --GKLDIVCSNSG  116 (283)
T ss_dssp             --SCCCEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              47899998664

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=87.05  E-value=4.9  Score=36.88  Aligned_cols=86  Identities=12%  Similarity=-0.003  Sum_probs=52.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEE-eCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIAL-DKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~av-D~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|..+|=.|++ |+.+.++|..+ ..+.+|+.+ ..+....+.+.+.++..+. ++.++..|.++...-. ..+.-..  
T Consensus        26 ~~k~~lVTGas-~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~--  101 (267)
T 3u5t_A           26 TNKVAIVTGAS-RGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGG-KALTAQADVSDPAAVRRLFATAEE--  101 (267)
T ss_dssp             -CCEEEEESCS-SHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHH--
Confidence            36677766655 66677777644 234577766 5677788888887877763 5788889987652100 0000001  


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+..|.++.++-
T Consensus       102 ~~g~iD~lvnnAG  114 (267)
T 3u5t_A          102 AFGGVDVLVNNAG  114 (267)
T ss_dssp             HHSCEEEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            1147899998764

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=87.05  E-value=4.9  Score=36.94  Aligned_cols=87  Identities=16%  Similarity=0.166  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEEcccccccccc-hhhHHHhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLS--SIQTHVYDSTRINTSS-QIDIERMK  160 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~--~v~~~~~D~~~~~~~~-~~d~~~~~  160 (397)
                      .+.++|=.| |+|+.+.++|..+ ..+.+|++++.++..++.+.+.++..+..  ++.++..|..+...-. ..+.....
T Consensus         5 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            5 SNKTVIITG-SSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            356666666 5577777777654 34568999999999888887777665532  5888889987642100 00000011


Q ss_pred             hcccCccEEEEcCC
Q psy17793        161 LQKESFDRILLDAP  174 (397)
Q Consensus       161 ~~~~~fD~Il~DpP  174 (397)
                        -+.+|.++.++-
T Consensus        84 --~g~iD~lv~nAg   95 (280)
T 1xkq_A           84 --FGKIDVLVNNAG   95 (280)
T ss_dssp             --HSCCCEEEECCC
T ss_pred             --cCCCCEEEECCC
Confidence              147899999774

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=87.01  E-value=5.1  Score=36.46  Aligned_cols=85  Identities=13%  Similarity=0.077  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEE-eCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIAL-DKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~av-D~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|.++|=.|++ |+.+.++|..+ ..+.+|+.+ +.+....+.+.+.++..+. ++.++..|.++...-. ..+.....+
T Consensus         7 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (259)
T 3edm_A            7 TNRTIVVAGAG-RDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGR-SALAIKADLTNAAEVEAAISAAADKF   84 (259)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTS-CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            46677766655 66777777654 345678777 7788888888777777663 5778889987652100 000000111


Q ss_pred             cccCccEEEEcC
Q psy17793        162 QKESFDRILLDA  173 (397)
Q Consensus       162 ~~~~fD~Il~Dp  173 (397)
                        +..|.++.++
T Consensus        85 --g~id~lv~nA   94 (259)
T 3edm_A           85 --GEIHGLVHVA   94 (259)
T ss_dssp             --CSEEEEEECC
T ss_pred             --CCCCEEEECC
Confidence              4789999876

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=86.93  E-value=2.2  Score=40.27  Aligned_cols=51  Identities=16%  Similarity=0.108  Sum_probs=35.1

Q ss_pred             ccCCCCCCeEEEEcCC--CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         80 YLDVQPGQKVLDMCAA--PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        80 ~L~~~~g~~VLDlcag--pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      ..++++|++||-.|++  .|..+.+++...  +.+|+++|.++++++.+++    +|..
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~----~g~~  187 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAW  187 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCS
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCC
Confidence            3467899999998853  233444455443  3589999999998877754    5654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=86.90  E-value=1.1  Score=43.77  Aligned_cols=50  Identities=24%  Similarity=0.293  Sum_probs=38.9

Q ss_pred             cCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q psy17793         81 LDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL  135 (397)
Q Consensus        81 L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~  135 (397)
                      ..+++|++||-.|+|+ |..++++|..+ +..+|+++|.++++++.++    ++|.
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~-Ga~~Vi~~~~~~~~~~~a~----~lGa  231 (398)
T 1kol_A          181 AGVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAK----AQGF  231 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTC
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHC-CCCeEEEEcCCHHHHHHHH----HcCC
Confidence            4678999999999765 66677777765 3348999999999988774    4686

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=86.85  E-value=0.33  Score=45.67  Aligned_cols=49  Identities=24%  Similarity=0.264  Sum_probs=36.4

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         83 VQPGQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        83 ~~~g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      +++|++||-.|+  +.|..+.++|...  +.+|+++|.++++++.++    ++|.+.
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~----~~ga~~  173 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPL----ALGAEE  173 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHH----HTTCSE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----hcCCCE
Confidence            789999999997  3355566666654  358999999999887764    467653

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=86.85  E-value=8.2  Score=34.35  Aligned_cols=86  Identities=13%  Similarity=0.087  Sum_probs=55.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .+.+||=.| |+|+.+.+++..+ ..+.+|++++.++..++.+.+.++..+ .++.++..|..+...-  ... ......
T Consensus        10 ~~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~--~~~~~~~~~~   85 (255)
T 1fmc_A           10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-GQAFACRCDITSEQEL--SALADFAISK   85 (255)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHH--HHHHHHHHHH
T ss_pred             CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhC-CceEEEEcCCCCHHHH--HHHHHHHHHh
Confidence            356677555 5688888888754 445689999999998888877777665 3578888898754210  000 000001


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      .+.+|.|+..+-
T Consensus        86 ~~~~d~vi~~Ag   97 (255)
T 1fmc_A           86 LGKVDILVNNAG   97 (255)
T ss_dssp             HSSCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            147899998664

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=86.84  E-value=5.5  Score=36.45  Aligned_cols=86  Identities=19%  Similarity=0.095  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCC-CChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793         85 PGQKVLDMCAA-PGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcag-pG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~  161 (397)
                      .|.+||=.|++ +|+.+.++|..+ ..+.+|+.++.++..-+.+++..+..+  ++.++..|..+...-  ... .....
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v--~~~~~~~~~   80 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN--SPYVYELDVSKEEHF--KSLYNSVKK   80 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHH--HHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEcCCCCHHHH--HHHHHHHHH
Confidence            36788888886 488888888755 345689999998762222332223333  367778888764210  000 00001


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+.+|.++.++-
T Consensus        81 ~~g~id~lv~nAg   93 (275)
T 2pd4_A           81 DLGSLDFIVHSVA   93 (275)
T ss_dssp             HTSCEEEEEECCC
T ss_pred             HcCCCCEEEECCc
Confidence            1247899998763

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=86.74  E-value=1.3  Score=42.54  Aligned_cols=54  Identities=19%  Similarity=0.349  Sum_probs=35.2

Q ss_pred             CCCCC-CeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         82 DVQPG-QKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        82 ~~~~g-~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ++++| ++||=.|+  +.|..++++|..+  +.+|+++..+++.++..++.++++|.+.
T Consensus       163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~~~~lGa~~  219 (364)
T 1gu7_A          163 KLTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQ  219 (364)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSE
T ss_pred             ccCCCCcEEEECCCCcHHHHHHHHHHHHC--CCEEEEEecCccccHHHHHHHHhcCCeE
Confidence            67889 99998876  3355666777765  3577777655554333334456788764

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=86.66  E-value=7  Score=36.80  Aligned_cols=87  Identities=13%  Similarity=0.129  Sum_probs=54.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCC------------HHHHHHHHHHHHHhCCCcEEEEEccccccccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKS------------KPRVTKLEETIKKLQLSSIQTHVYDSTRINTS  151 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s------------~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~  151 (397)
                      .|..+|=.|++ |+.+.++|..+ ..+.+|+.+|.+            ...++.+.+.++..+ .++.++..|..+...-
T Consensus        45 ~gk~~lVTGas-~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v  122 (317)
T 3oec_A           45 QGKVAFITGAA-RGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG-RRIIARQADVRDLASL  122 (317)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHH
Confidence            46677766654 66777777654 346789999886            777777777777766 3588888998764210


Q ss_pred             c-hhhHHHhhhcccCccEEEEcCCC
Q psy17793        152 S-QIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       152 ~-~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                      . ..+....  .-+.+|+++.++--
T Consensus       123 ~~~~~~~~~--~~g~iD~lVnnAg~  145 (317)
T 3oec_A          123 QAVVDEALA--EFGHIDILVSNVGI  145 (317)
T ss_dssp             HHHHHHHHH--HHSCCCEEEECCCC
T ss_pred             HHHHHHHHH--HcCCCCEEEECCCC
Confidence            0 0000001  11479999997743

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=86.64  E-value=8.9  Score=35.07  Aligned_cols=87  Identities=10%  Similarity=0.031  Sum_probs=55.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCC------------HHHHHHHHHHHHHhCCCcEEEEEccccccccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKS------------KPRVTKLEETIKKLQLSSIQTHVYDSTRINTS  151 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s------------~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~  151 (397)
                      .|.++|=.|++ |+.+.++|..+ ..+.+|+.+|.+            ...++.+.+.++..+ .++.++..|.++...-
T Consensus         9 ~~k~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v   86 (281)
T 3s55_A            9 EGKTALITGGA-RGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTG-RRCISAKVDVKDRAAL   86 (281)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcC-CeEEEEeCCCCCHHHH
Confidence            46778877755 66777777654 345689999987            677777777777766 3588888998765210


Q ss_pred             c-hhhHHHhhhcccCccEEEEcCCC
Q psy17793        152 S-QIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       152 ~-~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                      . ..+....  .-+.+|.++.++--
T Consensus        87 ~~~~~~~~~--~~g~id~lv~nAg~  109 (281)
T 3s55_A           87 ESFVAEAED--TLGGIDIAITNAGI  109 (281)
T ss_dssp             HHHHHHHHH--HHTCCCEEEECCCC
T ss_pred             HHHHHHHHH--hcCCCCEEEECCCC
Confidence            0 0000001  11479999987743

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=86.62  E-value=5.3  Score=36.79  Aligned_cols=86  Identities=7%  Similarity=0.001  Sum_probs=56.2

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~~  163 (397)
                      +..+|=.|++ |+.+.++|..+ ..+.+|+.++.++..++.+.+.++..+. ++.++..|.++...-. ..+....  .-
T Consensus        24 ~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~--~~   99 (279)
T 3sju_A           24 PQTAFVTGVS-SGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGH-DVDGSSCDVTSTDEVHAAVAAAVE--RF   99 (279)
T ss_dssp             -CEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHH--HH
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHH--Hc
Confidence            6677777754 66777777644 3457899999999999988888877663 5888889987652100 0000001  12


Q ss_pred             cCccEEEEcCCC
Q psy17793        164 ESFDRILLDAPC  175 (397)
Q Consensus       164 ~~fD~Il~DpPC  175 (397)
                      +..|.++.++--
T Consensus       100 g~id~lv~nAg~  111 (279)
T 3sju_A          100 GPIGILVNSAGR  111 (279)
T ss_dssp             CSCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            478999987743

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=86.61  E-value=5.9  Score=36.43  Aligned_cols=86  Identities=19%  Similarity=0.178  Sum_probs=54.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCC----------------HHHHHHHHHHHHHhCCCcEEEEEccccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKS----------------KPRVTKLEETIKKLQLSSIQTHVYDSTR  147 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s----------------~~rl~~l~~n~~~~g~~~v~~~~~D~~~  147 (397)
                      .|..+|=.|++ |+.+.++|..+ ..+.+|+.+|.+                .+.++.+.+.++..+ .++.++..|.++
T Consensus        10 ~~k~~lVTGas-~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~   87 (286)
T 3uve_A           10 EGKVAFVTGAA-RGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN-RRIVTAEVDVRD   87 (286)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT-CCEEEEECCTTC
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC-CceEEEEcCCCC
Confidence            46677777765 56677777644 346789999987                777777777666655 358888899876


Q ss_pred             ccccc-hhhHHHhhhcccCccEEEEcCC
Q psy17793        148 INTSS-QIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       148 ~~~~~-~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                      ...-. ..+....  .-+..|.++.++-
T Consensus        88 ~~~v~~~~~~~~~--~~g~id~lv~nAg  113 (286)
T 3uve_A           88 YDALKAAVDSGVE--QLGRLDIIVANAG  113 (286)
T ss_dssp             HHHHHHHHHHHHH--HHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHH--HhCCCCEEEECCc
Confidence            52100 0000001  1147999998764

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=86.42  E-value=6.5  Score=35.75  Aligned_cols=86  Identities=12%  Similarity=0.045  Sum_probs=54.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEE-eCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIAL-DKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~av-D~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .+.++|=.| |+|+.+.+++..+ ..+.+|+.+ +.++..++.+.+.++..+. ++.++..|.++...-. ..+....  
T Consensus         3 ~~k~vlVTG-as~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~--   78 (258)
T 3oid_A            3 QNKCALVTG-SSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGV-KVLVVKANVGQPAKIKEMFQQIDE--   78 (258)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHH--
T ss_pred             CCCEEEEec-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHH--
Confidence            356677656 4577787777655 345577775 8899998888888877663 5888889987652100 0000001  


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+..|.++.++-
T Consensus        79 ~~g~id~lv~nAg   91 (258)
T 3oid_A           79 TFGRLDVFVNNAA   91 (258)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            1247899998764

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=86.30  E-value=9.5  Score=34.97  Aligned_cols=86  Identities=8%  Similarity=0.046  Sum_probs=55.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .+..||=.|+ +|+.+.+++..+ ..+.+|++++.++..++.+.+.++..+. ++.++..|.++...-  ... ......
T Consensus        21 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v--~~~~~~~~~~   96 (277)
T 2rhc_B           21 DSEVALVTGA-TSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEI--EALVAAVVER   96 (277)
T ss_dssp             TSCEEEEETC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHH--HHHHHHHHHH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHH--HHHHHHHHHH
Confidence            3567777775 577777777654 3456899999999988888777776663 578888898764210  000 000001


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.++.++-
T Consensus        97 ~g~iD~lv~~Ag  108 (277)
T 2rhc_B           97 YGPVDVLVNNAG  108 (277)
T ss_dssp             TCSCSEEEECCC
T ss_pred             hCCCCEEEECCC
Confidence            247899998764

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=86.30  E-value=11  Score=34.82  Aligned_cols=87  Identities=5%  Similarity=-0.001  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEEcccccccccc-hhhHHH
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKL----QLSSIQTHVYDSTRINTSS-QIDIER  158 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~----g~~~v~~~~~D~~~~~~~~-~~d~~~  158 (397)
                      .+.+||=.|+ +|+.+.+++..+ ..+.+|++++.++..++.+.+.++..    .-.++.++.+|.++...-. ..+...
T Consensus        17 ~~k~vlVTGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           17 QGQVAIVTGG-ATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            3567886664 588888888754 34568999999999888887777652    1235888899987642100 000000


Q ss_pred             hhhcccCccEEEEcCC
Q psy17793        159 MKLQKESFDRILLDAP  174 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpP  174 (397)
                      ..  -+.+|.|+.++-
T Consensus        96 ~~--~g~id~li~~Ag  109 (303)
T 1yxm_A           96 DT--FGKINFLVNNGG  109 (303)
T ss_dssp             HH--HSCCCEEEECCC
T ss_pred             HH--cCCCCEEEECCC
Confidence            01  146899998664

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=86.17  E-value=8.6  Score=35.42  Aligned_cols=87  Identities=9%  Similarity=0.001  Sum_probs=56.4

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhh
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDK-SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMK  160 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~-s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~  160 (397)
                      ..+..+|=.|++ |+.+.++|..+ ..+.+|+.+|. ++..++.+.+.++..+ .++.++..|.++...-. ..+.-.. 
T Consensus        27 ~~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~-  103 (280)
T 4da9_A           27 KARPVAIVTGGR-RGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLG-ARVIFLRADLADLSSHQATVDAVVA-  103 (280)
T ss_dssp             CCCCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTT-CCEEEEECCTTSGGGHHHHHHHHHH-
T ss_pred             cCCCEEEEecCC-CHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHH-
Confidence            346677777755 66777777654 34568999995 8888888888787776 35888899988653100 0000001 


Q ss_pred             hcccCccEEEEcCC
Q psy17793        161 LQKESFDRILLDAP  174 (397)
Q Consensus       161 ~~~~~fD~Il~DpP  174 (397)
                       .-+..|.++.++-
T Consensus       104 -~~g~iD~lvnnAg  116 (280)
T 4da9_A          104 -EFGRIDCLVNNAG  116 (280)
T ss_dssp             -HHSCCCEEEEECC
T ss_pred             -HcCCCCEEEECCC
Confidence             1147899999774

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=86.06  E-value=1.5  Score=42.28  Aligned_cols=46  Identities=17%  Similarity=0.140  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCH---HHHHHHHHHHHHhCCCc
Q psy17793         86 GQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSK---PRVTKLEETIKKLQLSS  137 (397)
Q Consensus        86 g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~---~rl~~l~~n~~~~g~~~  137 (397)
                      |++||-.|+|+ |..++++|..+  +.+|+++|.++   ++++.++    ++|.+.
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~----~~ga~~  230 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIE----ETKTNY  230 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHH----HHTCEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHH----HhCCce
Confidence            99999999832 33344555544  34899999998   7776554    467643

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=86.00  E-value=3.2  Score=37.28  Aligned_cols=80  Identities=13%  Similarity=0.067  Sum_probs=49.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES  165 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~  165 (397)
                      |..||=.| |+|+.+.++|..+..++.|++++.++..++.+.+      ..++.++..|..+..........  ...-+.
T Consensus         5 ~k~vlITG-as~gIG~~~a~~l~~g~~v~~~~r~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~--~~~~~~   75 (245)
T 3e9n_A            5 KKIAVVTG-ATGGMGIEIVKDLSRDHIVYALGRNPEHLAALAE------IEGVEPIESDIVKEVLEEGGVDK--LKNLDH   75 (245)
T ss_dssp             -CEEEEES-TTSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHT------STTEEEEECCHHHHHHTSSSCGG--GTTCSC
T ss_pred             CCEEEEEc-CCCHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHh------hcCCcceecccchHHHHHHHHHH--HHhcCC
Confidence            55666666 5577888888877667899999999988766543      34578888887653110000000  001247


Q ss_pred             ccEEEEcCC
Q psy17793        166 FDRILLDAP  174 (397)
Q Consensus       166 fD~Il~DpP  174 (397)
                      +|.++.++-
T Consensus        76 id~lv~~Ag   84 (245)
T 3e9n_A           76 VDTLVHAAA   84 (245)
T ss_dssp             CSEEEECC-
T ss_pred             CCEEEECCC
Confidence            899998764

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=85.93  E-value=10  Score=34.97  Aligned_cols=86  Identities=14%  Similarity=0.027  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHH-------HHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKP-------RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~-------rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      .+..+|=.|++ |+.+.++|..+ ..+.+|+.++.+..       .++.+.+.++..+. ++.++..|.++...-  ...
T Consensus         8 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v--~~~   83 (285)
T 3sc4_A            8 RGKTMFISGGS-RGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG-QALPIVGDIRDGDAV--AAA   83 (285)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTS-EEEEEECCTTSHHHH--HHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCC-cEEEEECCCCCHHHH--HHH
Confidence            36677766755 66777777654 44568999999876       46666666666663 588888998765210  000


Q ss_pred             -HHhhhcccCccEEEEcCC
Q psy17793        157 -ERMKLQKESFDRILLDAP  174 (397)
Q Consensus       157 -~~~~~~~~~fD~Il~DpP  174 (397)
                       ......-+..|.++.++-
T Consensus        84 ~~~~~~~~g~id~lvnnAg  102 (285)
T 3sc4_A           84 VAKTVEQFGGIDICVNNAS  102 (285)
T ss_dssp             HHHHHHHHSCCSEEEECCC
T ss_pred             HHHHHHHcCCCCEEEECCC
Confidence             000011247999998764

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=85.92  E-value=5.3  Score=36.92  Aligned_cols=87  Identities=10%  Similarity=0.079  Sum_probs=55.6

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDK-SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~-s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      +.++|=.|++ |+.+.++|..+ ..+.+|+.+|. ++..++.+.+.++...-.++.++..|.++...-  ... ......
T Consensus        25 ~k~~lVTGas-~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v--~~~~~~~~~~  101 (281)
T 3v2h_A           25 TKTAVITGST-SGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEI--ADMMAMVADR  101 (281)
T ss_dssp             TCEEEEETCS-SHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHH--HHHHHHHHHH
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHH--HHHHHHHHHH
Confidence            6677777755 66777777654 34568999998 777888777777665445688888998764210  000 000011


Q ss_pred             ccCccEEEEcCCC
Q psy17793        163 KESFDRILLDAPC  175 (397)
Q Consensus       163 ~~~fD~Il~DpPC  175 (397)
                      -+.+|.++.++--
T Consensus       102 ~g~iD~lv~nAg~  114 (281)
T 3v2h_A          102 FGGADILVNNAGV  114 (281)
T ss_dssp             TSSCSEEEECCCC
T ss_pred             CCCCCEEEECCCC
Confidence            2478999987643

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=85.84  E-value=0.38  Score=45.75  Aligned_cols=50  Identities=18%  Similarity=0.077  Sum_probs=36.4

Q ss_pred             CCCCCC-eEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         82 DVQPGQ-KVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        82 ~~~~g~-~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ++++|+ +||=.|+  +.|..++++|..++  .+|++++.++++++.++    ++|.+.
T Consensus       145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~----~lGa~~  197 (328)
T 1xa0_A          145 GLTPERGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLR----VLGAKE  197 (328)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHH----HTTCSE
T ss_pred             CCCCCCceEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH----HcCCcE
Confidence            567886 8998887  34556667777653  57999999988887764    478754

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=85.81  E-value=7.9  Score=35.02  Aligned_cols=84  Identities=14%  Similarity=0.066  Sum_probs=52.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .|.++|=.|+ +|+.+.+++..+ ..+.+|+.+|.+...++.+.+.+   + .++.++..|.++...-  ... ......
T Consensus         7 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~v--~~~~~~~~~~   79 (259)
T 4e6p_A            7 EGKSALITGS-ARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---G-PAAYAVQMDVTRQDSI--DAAIAATVEH   79 (259)
T ss_dssp             TTCEEEEETC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C-TTEEEEECCTTCHHHH--HHHHHHHHHH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-CCceEEEeeCCCHHHH--HHHHHHHHHH
Confidence            4667776664 577777777654 34568999999998877665543   3 3578888898764210  000 000011


Q ss_pred             ccCccEEEEcCCC
Q psy17793        163 KESFDRILLDAPC  175 (397)
Q Consensus       163 ~~~fD~Il~DpPC  175 (397)
                      -+.+|.++.++--
T Consensus        80 ~g~id~lv~~Ag~   92 (259)
T 4e6p_A           80 AGGLDILVNNAAL   92 (259)
T ss_dssp             SSSCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2479999997643

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=85.79  E-value=0.57  Score=45.10  Aligned_cols=50  Identities=14%  Similarity=0.193  Sum_probs=31.6

Q ss_pred             cCCCCCCeEEEEcCC--CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPGQKVLDMCAA--PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g~~VLDlcag--pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ..+++|++||=.|++  .|..++++|..+ +..+|++.+ ++.+.+.++     +|.+.
T Consensus       138 ~~~~~g~~VlV~Ga~G~vG~~a~qla~~~-g~~~V~~~~-~~~~~~~~~-----~ga~~  189 (349)
T 4a27_A          138 ANLREGMSVLVHSAGGGVGQAVAQLCSTV-PNVTVFGTA-STFKHEAIK-----DSVTH  189 (349)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHTTS-TTCEEEEEE-CGGGHHHHG-----GGSSE
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHc-CCcEEEEeC-CHHHHHHHH-----cCCcE
Confidence            467899999988874  234444555443 346899988 555554442     67654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=85.79  E-value=8.3  Score=34.52  Aligned_cols=86  Identities=9%  Similarity=0.069  Sum_probs=57.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .+..||=.|+ +|+.+.++|..+ ..+.+|+.+|.++..++.+.+.++..+ .++.++..|.++...-  ... ......
T Consensus         8 ~~k~vlITGa-s~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~--~~~~~~~~~~   83 (253)
T 3qiv_A            8 ENKVGIVTGS-GGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG-GTAISVAVDVSDPESA--KAMADRTLAE   83 (253)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTSHHHH--HHHHHHHHHH
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHH--HHHHHHHHHH
Confidence            3667776665 577777777654 345689999999999999888887766 3578888998765210  000 000001


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.++.++-
T Consensus        84 ~g~id~li~~Ag   95 (253)
T 3qiv_A           84 FGGIDYLVNNAA   95 (253)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            147999998764

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=85.57  E-value=8.2  Score=34.79  Aligned_cols=87  Identities=8%  Similarity=0.015  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .+.+||=.| |+|+.+.+++..+ ..+..|++++.++..++.+.+.++..+. ++.++..|..+...-. ..+.-...+ 
T Consensus        13 ~~k~vlITG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~-   89 (266)
T 1xq1_A           13 KAKTVLVTG-GTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMF-   89 (266)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eeEEEECCCCCHHHHHHHHHHHHHHh-
Confidence            356677555 5678888888754 3456899999999988887777776653 5788888887542100 000000001 


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      .+.+|.|+.++-
T Consensus        90 ~~~id~li~~Ag  101 (266)
T 1xq1_A           90 GGKLDILINNLG  101 (266)
T ss_dssp             TTCCSEEEEECC
T ss_pred             CCCCcEEEECCC
Confidence            156899998663

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=85.53  E-value=3.1  Score=39.88  Aligned_cols=50  Identities=20%  Similarity=0.206  Sum_probs=34.5

Q ss_pred             cCCCCCCeEEEEcCC--CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         81 LDVQPGQKVLDMCAA--PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        81 L~~~~g~~VLDlcag--pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      .++++|++||-.|++  -|..+++++...  +.+|+++|.++++++.++    ++|.+
T Consensus       158 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~----~~g~~  209 (354)
T 2j8z_A          158 GNVQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAE----KLGAA  209 (354)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH----HHTCS
T ss_pred             cCCCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----HcCCc
Confidence            457899999988753  233444455543  458999999999987763    45754

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=85.39  E-value=9.7  Score=34.71  Aligned_cols=87  Identities=11%  Similarity=0.116  Sum_probs=56.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhH-HHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDI-ERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~-~~~~~  161 (397)
                      .+..||=.| |+|+.+.+++..+ ..+.+|++++.++.+++.+.+.++..+.. ++.++.+|..+...-  ... .....
T Consensus        31 ~~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v--~~~~~~~~~  107 (279)
T 1xg5_A           31 RDRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDI--LSMFSAIRS  107 (279)
T ss_dssp             TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHH--HHHHHHHHH
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHH--HHHHHHHHH
Confidence            356777666 5577888787654 34568999999999998888888777653 478888898764210  000 00000


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      ..+.+|.|+.++-
T Consensus       108 ~~g~iD~vi~~Ag  120 (279)
T 1xg5_A          108 QHSGVDICINNAG  120 (279)
T ss_dssp             HHCCCSEEEECCC
T ss_pred             hCCCCCEEEECCC
Confidence            1146899998653

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=85.37  E-value=9  Score=35.29  Aligned_cols=83  Identities=11%  Similarity=0.067  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .|..+|=.|++ |+.+.++|..+ ..+.+|+.+|.++..++.+.+.+   + .++.++..|.++...-. ..+....  .
T Consensus        28 ~gk~vlVTGas-~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~d~~~v~~~~~~~~~--~  100 (277)
T 3gvc_A           28 AGKVAIVTGAG-AGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---G-CGAAACRVDVSDEQQIIAMVDACVA--A  100 (277)
T ss_dssp             TTCEEEETTTT-STHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---C-SSCEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C-CcceEEEecCCCHHHHHHHHHHHHH--H
Confidence            36677766654 66677777644 34578999999998877665544   4 35778888987652100 0000001  1


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+..|.++.++-
T Consensus       101 ~g~iD~lvnnAg  112 (277)
T 3gvc_A          101 FGGVDKLVANAG  112 (277)
T ss_dssp             HSSCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            247899998664

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=85.24  E-value=5.3  Score=36.25  Aligned_cols=86  Identities=13%  Similarity=0.037  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCC-CChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAA-PGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcag-pG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .+.++|=.|++ +|+.+.+++..+. .+.+|+.++.++..-+.+++..+..+  .+.++..|.++...-. ..+.....+
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKEAF   84 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            36788888886 3788888876542 35689999998752223333223333  3677888887642100 000000111


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                        +.+|.++.++-
T Consensus        85 --g~iD~lv~~Ag   95 (261)
T 2wyu_A           85 --GGLDYLVHAIA   95 (261)
T ss_dssp             --SSEEEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              47899998664

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=85.22  E-value=0.63  Score=44.25  Aligned_cols=50  Identities=18%  Similarity=0.158  Sum_probs=35.8

Q ss_pred             CCCCCC-eEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         82 DVQPGQ-KVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        82 ~~~~g~-~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ++++|+ +||=.||  +-|..++++|..++  .+|++++.++++++.++    ++|.+.
T Consensus       146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~----~lGa~~  198 (330)
T 1tt7_A          146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLK----QLGASE  198 (330)
T ss_dssp             TCCGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHH----HHTCSE
T ss_pred             CcCCCCceEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----HcCCcE
Confidence            567786 8999887  33555667777653  57999999988887664    468654

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=85.21  E-value=0.9  Score=43.58  Aligned_cols=50  Identities=24%  Similarity=0.234  Sum_probs=35.3

Q ss_pred             ccCCCCCCeEEEEcCC--CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         80 YLDVQPGQKVLDMCAA--PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        80 ~L~~~~g~~VLDlcag--pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      ...+++|++||=.||+  .|..++++|...  +.+|+++ .++++++.+    +++|.+
T Consensus       145 ~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~--Ga~Vi~~-~~~~~~~~~----~~lGa~  196 (343)
T 3gaz_A          145 RAQVQDGQTVLIQGGGGGVGHVAIQIALAR--GARVFAT-ARGSDLEYV----RDLGAT  196 (343)
T ss_dssp             TTCCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEE-ECHHHHHHH----HHHTSE
T ss_pred             hcCCCCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEE-eCHHHHHHH----HHcCCC
Confidence            3457899999999853  355566667654  3589999 888887665    446764

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=85.19  E-value=4.8  Score=36.79  Aligned_cols=83  Identities=13%  Similarity=0.089  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .+..+|=.|+ +|+.+.+++..+ ..+.+|+.++.++..++.+.+.   ++ .++.++..|.++...-. ..+.....  
T Consensus         5 ~~k~vlITGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~D~~~~~~v~~~~~~~~~~--   77 (263)
T 2a4k_A            5 SGKTILVTGA-ASGIGRAALDLFAREGASLVAVDREERLLAEAVAA---LE-AEAIAVVADVSDPKAVEAVFAEALEE--   77 (263)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---CC-SSEEEEECCTTSHHHHHHHHHHHHHH--
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hc-CceEEEEcCCCCHHHHHHHHHHHHHH--
Confidence            3567776665 577777777654 3456899999998877655443   33 45788889987642100 00000011  


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.++.++-
T Consensus        78 ~g~iD~lvnnAg   89 (263)
T 2a4k_A           78 FGRLHGVAHFAG   89 (263)
T ss_dssp             HSCCCEEEEGGG
T ss_pred             cCCCcEEEECCC
Confidence            146899998764

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=85.10  E-value=4  Score=36.74  Aligned_cols=62  Identities=10%  Similarity=0.017  Sum_probs=40.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEEcccccc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQL------SSIQTHVYDSTRI  148 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~------~~v~~~~~D~~~~  148 (397)
                      +.+||=.| |+|+.+.+++..+ ..+.+|++++.++..++.+.+.++..+.      .++.++..|..+.
T Consensus         7 ~k~vlITG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   75 (264)
T 2pd6_A            7 SALALVTG-AGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEA   75 (264)
T ss_dssp             TCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSH
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCH
Confidence            56677555 4577888887654 3456899999999888776665544431      3577888888764

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=85.01  E-value=4.3  Score=37.40  Aligned_cols=85  Identities=9%  Similarity=0.034  Sum_probs=53.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      .+..||=.|+ +|+.+.+++..+ ..+.+|+++|.++..++.+.+.++..+  ++.++..|.++...-  ... ......
T Consensus        28 ~~k~vlVTGa-s~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~v--~~~~~~~~~~  102 (276)
T 2b4q_A           28 AGRIALVTGG-SRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG--DCQAIPADLSSEAGA--RRLAQALGEL  102 (276)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSS--CEEECCCCTTSHHHH--HHHHHHHHHH
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEeeCCCHHHH--HHHHHHHHHh
Confidence            3667776665 577777777654 345689999999988877766665444  677888888764210  000 000011


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.++.++-
T Consensus       103 ~g~iD~lvnnAg  114 (276)
T 2b4q_A          103 SARLDILVNNAG  114 (276)
T ss_dssp             CSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            247899998764

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=85.01  E-value=7.5  Score=35.25  Aligned_cols=86  Identities=20%  Similarity=0.214  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .+.++|=.|+ +|+.+.+++..+ ..+.+|+.++.++..++.+.+.++..|. ++.++..|..+...-. ..+.....+ 
T Consensus         6 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~-   82 (262)
T 1zem_A            6 NGKVCLVTGA-GGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDF-   82 (262)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHh-
Confidence            3667776665 577787777654 3456899999999988887777766553 5788888987642100 000000111 


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                       +.+|.++.++-
T Consensus        83 -g~id~lv~nAg   93 (262)
T 1zem_A           83 -GKIDFLFNNAG   93 (262)
T ss_dssp             -SCCCEEEECCC
T ss_pred             -CCCCEEEECCC
Confidence             47899998764

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=85.00  E-value=9.9  Score=34.89  Aligned_cols=86  Identities=15%  Similarity=0.048  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCCC-ChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793         85 PGQKVLDMCAAP-GNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagp-G~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~  161 (397)
                      .|.+||=.|+++ |+.+.+++..+ ..+.+|+.++.++..-+.+++..+..+  ++.++..|..+...-  ... .....
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v--~~~~~~~~~   95 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFG--SDLVVKCDVSLDEDI--KNLKKFLEE   95 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHH--HHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEcCCCCHHHH--HHHHHHHHH
Confidence            467888888863 78888888754 345689999998752223333223333  356778888754210  000 00001


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+.+|.++.++-
T Consensus        96 ~~g~iD~lv~~Ag  108 (285)
T 2p91_A           96 NWGSLDIIVHSIA  108 (285)
T ss_dssp             HTSCCCEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            1247899998764

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=84.91  E-value=11  Score=34.14  Aligned_cols=85  Identities=11%  Similarity=0.084  Sum_probs=54.1

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKL-QLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~-g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      +.+||=.|+ +|+.+.+++..+ ..+.+|++++.++..++.+.+.++.. + .++.++..|.++...-. ..+....  .
T Consensus         7 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~--~   82 (263)
T 3ai3_A            7 GKVAVITGS-SSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFG-VRVLEVAVDVATPEGVDAVVESVRS--S   82 (263)
T ss_dssp             TCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTSHHHHHHHHHHHHH--H
T ss_pred             CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHH--H
Confidence            567776664 577787777654 34568999999998888777666554 5 35788888987642100 0000000  1


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.++.++-
T Consensus        83 ~g~id~lv~~Ag   94 (263)
T 3ai3_A           83 FGGADILVNNAG   94 (263)
T ss_dssp             HSSCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            147899998764

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=84.91  E-value=11  Score=34.45  Aligned_cols=86  Identities=10%  Similarity=0.099  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHH-HHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETI-KKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~-~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .+..+|=.|+ +|+.+.+++..+ ..+.+|++++.++..++.+.+.+ +..+. ++.++..|.++...-. ..+..... 
T Consensus        20 ~~k~~lVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~-   96 (267)
T 1vl8_A           20 RGRVALVTGG-SRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVKEK-   96 (267)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHH-
Confidence            3567776665 577787777654 34568999999999888777666 44453 5778888987642100 00000011 


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                       -+.+|.++.++-
T Consensus        97 -~g~iD~lvnnAg  108 (267)
T 1vl8_A           97 -FGKLDTVVNAAG  108 (267)
T ss_dssp             -HSCCCEEEECCC
T ss_pred             -cCCCCEEEECCC
Confidence             147899998764

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=84.85  E-value=6.4  Score=35.53  Aligned_cols=87  Identities=13%  Similarity=0.031  Sum_probs=55.4

Q ss_pred             CCCCeEEEEcCC-CChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhh
Q psy17793         84 QPGQKVLDMCAA-PGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMK  160 (397)
Q Consensus        84 ~~g~~VLDlcag-pG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~  160 (397)
                      ..+.+||=.|++ +|+.+.++|..+ ..+.+|+.++.+....+.+++..+..+  .+.++..|.++...-  ... ....
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v--~~~~~~~~   87 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQI--DALFASLK   87 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHH--HHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHH--HHHHHHHH
Confidence            457789988874 477787777654 345689999998766666666666655  367888898765210  000 0000


Q ss_pred             hcccCccEEEEcCC
Q psy17793        161 LQKESFDRILLDAP  174 (397)
Q Consensus       161 ~~~~~fD~Il~DpP  174 (397)
                      ..-+..|.++.++-
T Consensus        88 ~~~g~id~lv~nAg  101 (271)
T 3ek2_A           88 THWDSLDGLVHSIG  101 (271)
T ss_dssp             HHCSCEEEEEECCC
T ss_pred             HHcCCCCEEEECCc
Confidence            11247899998764

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=84.82  E-value=0.83  Score=43.35  Aligned_cols=34  Identities=18%  Similarity=0.161  Sum_probs=22.9

Q ss_pred             ccccccCCcEEEEEecCCCccccHHHHHHHHHHC
Q psy17793        222 GIPLLKKDGILVYCTCSLSVEENEAVIAWILHRH  255 (397)
Q Consensus       222 a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~  255 (397)
                      |.++|+|||.+|.-.-.....+.|+++..+.+.+
T Consensus       240 A~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~F  273 (320)
T 2hwk_A          240 ACLHLNPGGTCVSIGYGYADRASESIIGAIARQF  273 (320)
T ss_dssp             HGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTE
T ss_pred             HHHhcCCCceEEEEEecCCcccHHHHHHHHHHhc
Confidence            9999999999998754433224565665555443

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=84.80  E-value=10  Score=34.71  Aligned_cols=87  Identities=11%  Similarity=-0.044  Sum_probs=55.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDK-SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~-s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|..||=.|+ +|+.+.++|..+ ..+.+|+.++. +....+.+.+.++..+. ++.++..|..+...-. ..+.-..  
T Consensus        27 ~~k~vlVTGa-s~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~v~~~~~~~~~--  102 (269)
T 4dmm_A           27 TDRIALVTGA-SRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGG-EAFAVKADVSQESEVEALFAAVIE--  102 (269)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHH--
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHH--
Confidence            3667776665 467777777654 34568888888 78888888888877764 5788889987652100 0000001  


Q ss_pred             cccCccEEEEcCCC
Q psy17793        162 QKESFDRILLDAPC  175 (397)
Q Consensus       162 ~~~~fD~Il~DpPC  175 (397)
                      .-+..|.++.++--
T Consensus       103 ~~g~id~lv~nAg~  116 (269)
T 4dmm_A          103 RWGRLDVLVNNAGI  116 (269)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence            12478999997743

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=84.74  E-value=13  Score=34.04  Aligned_cols=85  Identities=12%  Similarity=0.169  Sum_probs=55.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~  163 (397)
                      +..||=.| |+|+.+.+++..+. .+.+|++++.++..++.+.+.++..+. ++.++..|.++...-  ... .......
T Consensus        44 ~k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~d~~~v--~~~~~~~~~~~  119 (285)
T 2c07_A           44 NKVALVTG-AGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEI--SEVINKILTEH  119 (285)
T ss_dssp             SCEEEEES-TTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHH--HHHHHHHHHHC
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-ceeEEECCCCCHHHH--HHHHHHHHHhc
Confidence            56777666 45888888887654 456899999999888877777766553 578888898764210  000 0000012


Q ss_pred             cCccEEEEcCC
Q psy17793        164 ESFDRILLDAP  174 (397)
Q Consensus       164 ~~fD~Il~DpP  174 (397)
                      +.+|.|+.++-
T Consensus       120 ~~id~li~~Ag  130 (285)
T 2c07_A          120 KNVDILVNNAG  130 (285)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            46899998764

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=84.72  E-value=8.6  Score=35.06  Aligned_cols=86  Identities=15%  Similarity=0.144  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCC------------HHHHHHHHHHHHHhCCCcEEEEEccccccccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKS------------KPRVTKLEETIKKLQLSSIQTHVYDSTRINTS  151 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s------------~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~  151 (397)
                      .|..+|=.|+ +|+.+.++|..+ ..+.+|+.+|.+            .+.++.+.+.++..+ .++.++..|.++...-
T Consensus        12 ~gk~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v   89 (278)
T 3sx2_A           12 TGKVAFITGA-ARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG-SRIVARQADVRDRESL   89 (278)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT-CCEEEEECCTTCHHHH
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC-CeEEEEeCCCCCHHHH
Confidence            4667777775 466777777654 346789999987            778887777777776 3688899998765210


Q ss_pred             c-hhhHHHhhhcccCccEEEEcCC
Q psy17793        152 S-QIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       152 ~-~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                      . ..+....  .-+..|.++.++-
T Consensus        90 ~~~~~~~~~--~~g~id~lv~nAg  111 (278)
T 3sx2_A           90 SAALQAGLD--ELGRLDIVVANAG  111 (278)
T ss_dssp             HHHHHHHHH--HHCCCCEEEECCC
T ss_pred             HHHHHHHHH--HcCCCCEEEECCC
Confidence            0 0000001  1147899998764

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=84.58  E-value=7.8  Score=34.39  Aligned_cols=85  Identities=13%  Similarity=0.067  Sum_probs=52.9

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCC-Cc-------EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMND-TG-------TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-  156 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~-~~-------~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-  156 (397)
                      +..||=.| |+|+.+.+++..+.. +.       .|++++.++..++.+.+.++..+ .++.++..|..+...-  ... 
T Consensus         2 ~k~vlITG-asggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v--~~~~   77 (244)
T 2bd0_A            2 KHILLITG-AGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG-ALTDTITADISDMADV--RRLT   77 (244)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT-CEEEEEECCTTSHHHH--HHHH
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccC-CeeeEEEecCCCHHHH--HHHH
Confidence            34566455 568888888775532 33       79999999998888777766544 3578888998764210  000 


Q ss_pred             HHhhhcccCccEEEEcCC
Q psy17793        157 ERMKLQKESFDRILLDAP  174 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpP  174 (397)
                      .......+.+|.|+.++-
T Consensus        78 ~~~~~~~g~id~li~~Ag   95 (244)
T 2bd0_A           78 THIVERYGHIDCLVNNAG   95 (244)
T ss_dssp             HHHHHHTSCCSEEEECCC
T ss_pred             HHHHHhCCCCCEEEEcCC
Confidence            000001247899998663

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=84.44  E-value=1  Score=43.38  Aligned_cols=52  Identities=13%  Similarity=0.190  Sum_probs=34.4

Q ss_pred             ccCCCCC--CeEEEEcCC--CChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         80 YLDVQPG--QKVLDMCAA--PGNKLTHIALLMNDTG-TLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        80 ~L~~~~g--~~VLDlcag--pG~kt~~lA~~~~~~~-~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      ..++++|  ++||-.|++  -|..+++++...  +. +|+++|.++++++.+++   .+|..
T Consensus       153 ~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~---~~g~~  209 (357)
T 2zb4_A          153 KGHITAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTS---ELGFD  209 (357)
T ss_dssp             HSCCCTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH---TSCCS
T ss_pred             hcCCCCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHH---HcCCc
Confidence            3467889  999998873  233344444432  34 89999999988776653   25654

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=84.41  E-value=4  Score=37.27  Aligned_cols=86  Identities=12%  Similarity=0.142  Sum_probs=50.4

Q ss_pred             CCCeEEEEcC-CCChHHHHHHHHc-CCCcEEEEEeCCHHH-HHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhh
Q psy17793         85 PGQKVLDMCA-APGNKLTHIALLM-NDTGTLIALDKSKPR-VTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMK  160 (397)
Q Consensus        85 ~g~~VLDlca-gpG~kt~~lA~~~-~~~~~V~avD~s~~r-l~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~  160 (397)
                      .|.++|=.|+ |+|+.+.+++..+ ..+.+|+.+|.++.. ++.+.   +.++ .++.++..|.++...-. ..+.....
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRIT---DRLP-AKAPLLELDVQNEEHLASLAGRVTEA   81 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHH---TTSS-SCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHH---HhcC-CCceEEEccCCCHHHHHHHHHHHHHH
Confidence            4678888888 4888888888755 345689999998765 33332   2233 24667788887642100 00000001


Q ss_pred             hc-ccCccEEEEcCC
Q psy17793        161 LQ-KESFDRILLDAP  174 (397)
Q Consensus       161 ~~-~~~fD~Il~DpP  174 (397)
                      +. .+.+|.++.++-
T Consensus        82 ~g~~~~iD~lv~nAg   96 (269)
T 2h7i_A           82 IGAGNKLDGVVHSIG   96 (269)
T ss_dssp             HCTTCCEEEEEECCC
T ss_pred             hCCCCCceEEEECCc
Confidence            10 017899998663

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=84.33  E-value=11  Score=33.63  Aligned_cols=86  Identities=17%  Similarity=0.054  Sum_probs=53.7

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDK-SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~-s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      +.++|=.| |+|+.+.++|..+ ..+.+|+.++. ++.+.+.+.+.++..+. ++.++..|.++...-. ..+....  .
T Consensus         4 ~k~~lVTG-as~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~--~   79 (246)
T 3osu_A            4 TKSALVTG-ASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGV-DSFAIQANVADADEVKAMIKEVVS--Q   79 (246)
T ss_dssp             SCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTS-CEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHH--H
Confidence            45566555 5577788777654 34567888777 67888888888877764 5778888987642100 0000001  1


Q ss_pred             ccCccEEEEcCCC
Q psy17793        163 KESFDRILLDAPC  175 (397)
Q Consensus       163 ~~~fD~Il~DpPC  175 (397)
                      -+.+|.++.++--
T Consensus        80 ~g~id~lv~nAg~   92 (246)
T 3osu_A           80 FGSLDVLVNNAGI   92 (246)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1478999997753

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=84.15  E-value=1.6  Score=43.32  Aligned_cols=51  Identities=18%  Similarity=0.123  Sum_probs=36.6

Q ss_pred             cCCCCCCeEEEEcCC--CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPGQKVLDMCAA--PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g~~VLDlcag--pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      .++++|++||=.||+  -|..++++|...  +.+|++++.++++++.++    ++|.+.
T Consensus       216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~--Ga~vi~~~~~~~~~~~~~----~lGa~~  268 (447)
T 4a0s_A          216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG--GGIPVAVVSSAQKEAAVR----ALGCDL  268 (447)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTCCC
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCCE
Confidence            467899999988862  244555666654  468999999999988764    578754

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=83.58  E-value=9.6  Score=34.04  Aligned_cols=82  Identities=9%  Similarity=-0.076  Sum_probs=51.5

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~  163 (397)
                      +.++|=.|+ +|+.+.++|..+ ..+.+|+.+|.++.+++.+.+.+   +. ++.++..|.++...-  ... .......
T Consensus         3 ~k~vlVTGa-s~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~D~~~~~~v--~~~~~~~~~~~   75 (235)
T 3l6e_A            3 LGHIIVTGA-GSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL---GN-AVIGIVADLAHHEDV--DVAFAAAVEWG   75 (235)
T ss_dssp             CCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---GG-GEEEEECCTTSHHHH--HHHHHHHHHHH
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---cC-CceEEECCCCCHHHH--HHHHHHHHHhc
Confidence            456666665 467777777654 34578999999999888776655   21 488888998764210  000 0000112


Q ss_pred             cCccEEEEcCC
Q psy17793        164 ESFDRILLDAP  174 (397)
Q Consensus       164 ~~fD~Il~DpP  174 (397)
                      +..|.++.++-
T Consensus        76 g~id~lvnnAg   86 (235)
T 3l6e_A           76 GLPELVLHCAG   86 (235)
T ss_dssp             CSCSEEEEECC
T ss_pred             CCCcEEEECCC
Confidence            47899998764

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=83.52  E-value=3.3  Score=39.02  Aligned_cols=51  Identities=25%  Similarity=0.221  Sum_probs=34.0

Q ss_pred             ccCCCCCCeEEEEc-CC-CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMC-AA-PGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlc-ag-pG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...+++|++||=.| +| -|..++++|..+  +.+|++++ ++.+++    .++++|.+.
T Consensus       147 ~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~--Ga~vi~~~-~~~~~~----~~~~lGa~~  199 (321)
T 3tqh_A          147 QAEVKQGDVVLIHAGAGGVGHLAIQLAKQK--GTTVITTA-SKRNHA----FLKALGAEQ  199 (321)
T ss_dssp             HTTCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEE-CHHHHH----HHHHHTCSE
T ss_pred             hcCCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEe-ccchHH----HHHHcCCCE
Confidence            34688999999875 33 355666777765  35888887 555544    345688764

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=83.47  E-value=11  Score=33.39  Aligned_cols=85  Identities=15%  Similarity=0.074  Sum_probs=54.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEEcccccccccchhhH-HHhhhc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKK-LQLSSIQTHVYDSTRINTSSQIDI-ERMKLQ  162 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~-~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~  162 (397)
                      +..||=.| |+|+.+.+++..+ ..+.+|++++.++..++.+.+.++. .+ .++.++..|..+...-  ... ......
T Consensus         7 ~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~--~~~~~~~~~~   82 (248)
T 2pnf_A            7 GKVSLVTG-STRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYG-VKAHGVEMNLLSEESI--NKAFEEIYNL   82 (248)
T ss_dssp             TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHC-CCEEEEECCTTCHHHH--HHHHHHHHHH
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcC-CceEEEEccCCCHHHH--HHHHHHHHHh
Confidence            55666555 5688888888754 3456899999999988877776655 45 3578888888754210  000 000001


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.|+.++-
T Consensus        83 ~~~~d~vi~~Ag   94 (248)
T 2pnf_A           83 VDGIDILVNNAG   94 (248)
T ss_dssp             SSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            147899998664

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=83.42  E-value=8.1  Score=35.22  Aligned_cols=86  Identities=12%  Similarity=0.083  Sum_probs=54.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDK-SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~-s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~  161 (397)
                      .|.+||=.|+ +|+.+.++|..+ ..+.+|+.++. +....+.+.+.++..+. ++.++..|..+...-  ... .....
T Consensus        28 ~~k~vlITGa-s~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v--~~~~~~~~~  103 (271)
T 4iin_A           28 TGKNVLITGA-SKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGY-KAAVIKFDAASESDF--IEAIQTIVQ  103 (271)
T ss_dssp             SCCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHH--HHHHHHHHH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHH--HHHHHHHHH
Confidence            4667776665 466777777654 34568999988 67777778887877763 578888998764210  000 00001


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      ..+.+|.++.++-
T Consensus       104 ~~g~id~li~nAg  116 (271)
T 4iin_A          104 SDGGLSYLVNNAG  116 (271)
T ss_dssp             HHSSCCEEEECCC
T ss_pred             hcCCCCEEEECCC
Confidence            1247999998764

>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}

Probab=83.33  E-value=0.75  Score=41.15  Aligned_cols=36  Identities=28%  Similarity=0.380  Sum_probs=31.1

Q ss_pred             CCCCeEEEechhhhhhhhcccceecccccccCCCCC
Q psy17793        342 VHHPVQIIVDQPCALAVLRGADVFAPGVLAMPLGKN  377 (397)
Q Consensus       342 ~~~~~~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~  377 (397)
                      .+....|+||..+..|+++|+.+++|||++++.++.
T Consensus        72 L~~~g~VvVD~GAv~Al~~GaSLl~pGV~~v~g~F~  107 (195)
T 3zv0_C           72 LVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIE  107 (195)
T ss_dssp             GTTSEEEEECHHHHHHHHTTCCEEGGGEEEEETTCC
T ss_pred             hccCCeEEECHHHHHHHhcCCCccCCCcEecCCCcC
Confidence            445668999999999999999999999999987654

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=82.98  E-value=4.3  Score=37.59  Aligned_cols=86  Identities=12%  Similarity=0.104  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .|..+|=.|++ |+.+.++|..+ ..+.+|+.+|.++..++.+.+.++..+ .++.++..|.++...-. ..+....  .
T Consensus         7 ~gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~--~   82 (280)
T 3tox_A            7 EGKIAIVTGAS-SGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGG-GEAAALAGDVGDEALHEALVELAVR--R   82 (280)
T ss_dssp             TTCEEEESSTT-SHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTT-CCEEECCCCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHH--H
Confidence            36677766654 66777777644 345789999999999888877776554 35788888887642100 0000001  1


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.++.++-
T Consensus        83 ~g~iD~lvnnAg   94 (280)
T 3tox_A           83 FGGLDTAFNNAG   94 (280)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            147999998764

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=82.96  E-value=13  Score=32.73  Aligned_cols=84  Identities=13%  Similarity=0.084  Sum_probs=52.6

Q ss_pred             CeEEEEcCCCChHHHHHHHHc-CCCcEEEE-EeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH-HHhhhcc
Q psy17793         87 QKVLDMCAAPGNKLTHIALLM-NDTGTLIA-LDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI-ERMKLQK  163 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~-~~~~~V~a-vD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~-~~~~~~~  163 (397)
                      .+|| +.-|+|+.+.+++..+ ..+.+|++ .+.++...+.+.+.++..+ .++.++..|.++...-  ... ......-
T Consensus         2 k~vl-VTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~--~~~~~~~~~~~   77 (244)
T 1edo_A            2 PVVV-VTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYG-GQAITFGGDVSKEADV--EAMMKTAIDAW   77 (244)
T ss_dssp             CEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHT-CEEEEEECCTTSHHHH--HHHHHHHHHHS
T ss_pred             CEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEeCCCCCHHHH--HHHHHHHHHHc
Confidence            3455 4446688888888755 34567888 4889888888877777666 3578888898764210  000 0000012


Q ss_pred             cCccEEEEcCC
Q psy17793        164 ESFDRILLDAP  174 (397)
Q Consensus       164 ~~fD~Il~DpP  174 (397)
                      +.+|.|+.++-
T Consensus        78 g~id~li~~Ag   88 (244)
T 1edo_A           78 GTIDVVVNNAG   88 (244)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47899998664

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=82.95  E-value=3.7  Score=39.39  Aligned_cols=55  Identities=18%  Similarity=0.274  Sum_probs=34.0

Q ss_pred             cCCCCCCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         81 LDVQPGQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        81 L~~~~g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      .++++|++||=.|+  +.|..++++|..++ ...|..++.++.+-+. .+.++++|.+.
T Consensus       163 ~~~~~g~~VlV~Ga~G~vG~~aiqlak~~G-a~vi~~~~~~~~~~~~-~~~~~~lGa~~  219 (357)
T 1zsy_A          163 EQLQPGDSVIQNASNSGVGQAVIQIAAALG-LRTINVVRDRPDIQKL-SDRLKSLGAEH  219 (357)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEECCCSCHHHH-HHHHHHTTCSE
T ss_pred             hccCCCCEEEEeCCcCHHHHHHHHHHHHcC-CEEEEEecCccchHHH-HHHHHhcCCcE
Confidence            46789999999986  34666777887653 3345555555432211 23456788764

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=82.86  E-value=11  Score=33.50  Aligned_cols=62  Identities=15%  Similarity=0.012  Sum_probs=42.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEE-eCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMN-DTGTLIAL-DKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI  148 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~av-D~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~  148 (397)
                      .|..+|=.|++ |+.+.+++..+. .+..|+.+ +.+....+.+.+.++..+ .++.++..|..+.
T Consensus         6 ~~k~vlITGas-~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~   69 (255)
T 3icc_A            6 KGKVALVTGAS-RGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNG-GSAFSIGANLESL   69 (255)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTT-CEEEEEECCTTSH
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcC-CceEEEecCcCCH
Confidence            36677766655 667777776543 34567664 677788887777777766 3577888888765

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=82.80  E-value=18  Score=32.78  Aligned_cols=86  Identities=12%  Similarity=0.023  Sum_probs=55.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeC-CHHHHHHHHHHHHHh-CCCcEEEEEcccccc----cccc-hhhHH
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDK-SKPRVTKLEETIKKL-QLSSIQTHVYDSTRI----NTSS-QIDIE  157 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~-s~~rl~~l~~n~~~~-g~~~v~~~~~D~~~~----~~~~-~~d~~  157 (397)
                      |..+|=.| |+|+.+.+++..+ ..+.+|+.++. ++..++.+.+.++.. + .++.++..|..+.    ..-. ..+..
T Consensus        11 ~k~~lVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   88 (276)
T 1mxh_A           11 CPAAVITG-GARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA-GSAVLCKGDLSLSSSLLDCCEDIIDCS   88 (276)
T ss_dssp             CCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcC-CceEEEeccCCCccccHHHHHHHHHHH
Confidence            55677555 5677888888754 34568999999 998888887777665 4 4678888998764    2100 00000


Q ss_pred             HhhhcccCccEEEEcCCC
Q psy17793        158 RMKLQKESFDRILLDAPC  175 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPC  175 (397)
                      ...+  +.+|.++.++-.
T Consensus        89 ~~~~--g~id~lv~nAg~  104 (276)
T 1mxh_A           89 FRAF--GRCDVLVNNASA  104 (276)
T ss_dssp             HHHH--SCCCEEEECCCC
T ss_pred             HHhc--CCCCEEEECCCC
Confidence            0111  478999997743

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=82.64  E-value=2.7  Score=41.31  Aligned_cols=121  Identities=13%  Similarity=0.150  Sum_probs=76.5

Q ss_pred             EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793         69 LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI  148 (397)
Q Consensus        69 ~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~  148 (397)
                      .+|+++.++...+.... .+||++..+-|..++.++    +...++.+.-|......    ++++|++. ..  .+... 
T Consensus        30 ~~~~~~~~l~~~~~~~~-~~~l~~n~~~g~~~~~~~----~~~~~~~~~~~~~~~~~----l~~~~~~~-~~--~~~~~-   96 (381)
T 3dmg_A           30 YRDPVHDLLQKTVEPFG-ERALDLNPGVGWGSLPLE----GRMAVERLETSRAAFRC----LTASGLQA-RL--ALPWE-   96 (381)
T ss_dssp             SSCHHHHHHHTTCCCCS-SEEEESSCTTSTTTGGGB----TTBEEEEEECBHHHHHH----HHHTTCCC-EE--CCGGG-
T ss_pred             CCChHHHHHHHHHHHhC-CcEEEecCCCCccccccC----CCCceEEEeCcHHHHHH----HHHcCCCc-cc--cCCcc-
Confidence            37799999988887654 689999999997765443    24678887655555444    67778864 11  11111 


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                                  .....||.|++-.|                   +.+-..+  . +..|..           +.+.|++
T Consensus        97 ------------~~~~~~d~v~~~~P-------------------k~k~~~~--~-~~~l~~-----------~~~~l~~  131 (381)
T 3dmg_A           97 ------------AAAGAYDLVVLALP-------------------AGRGTAY--V-QASLVA-----------AARALRM  131 (381)
T ss_dssp             ------------SCTTCEEEEEEECC-------------------GGGCHHH--H-HHHHHH-----------HHHHEEE
T ss_pred             ------------CCcCCCCEEEEECC-------------------cchhHHH--H-HHHHHH-----------HHHhCCC
Confidence                        13467999999777                   1111111  1 345566           7788999


Q ss_pred             CcEEEEEecCCCccccHHHHHHHHH
Q psy17793        229 DGILVYCTCSLSVEENEAVIAWILH  253 (397)
Q Consensus       229 gG~lvysTCS~~~eEnE~vV~~~L~  253 (397)
                      ||.|+..      -+|.+.++.+++
T Consensus       132 g~~i~~~------g~~~~g~~~~~~  150 (381)
T 3dmg_A          132 GGRLYLA------GDKNKGFERYFK  150 (381)
T ss_dssp             EEEEEEE------EEGGGTHHHHHH
T ss_pred             CCEEEEE------EccHHHHHHHHH
Confidence            9999876      344445555544

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=82.49  E-value=15  Score=33.80  Aligned_cols=83  Identities=8%  Similarity=0.061  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .+.++|=.|++ |+.+.++|..+ ..+.+|+.+|.++..++.+.+.   .+ ..+.++..|.++...-. ..+....  .
T Consensus        26 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~Dv~d~~~v~~~~~~~~~--~   98 (277)
T 4dqx_A           26 NQRVCIVTGGG-SGIGRATAELFAKNGAYVVVADVNEDAAVRVANE---IG-SKAFGVRVDVSSAKDAESMVEKTTA--K   98 (277)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---HC-TTEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC-CceEEEEecCCCHHHHHHHHHHHHH--H
Confidence            36677766655 66777777654 3456899999998877766544   34 35788888987642100 0000001  1


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+.+|.++.++-
T Consensus        99 ~g~iD~lv~nAg  110 (277)
T 4dqx_A           99 WGRVDVLVNNAG  110 (277)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            147899998764

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=82.47  E-value=13  Score=33.68  Aligned_cols=86  Identities=8%  Similarity=-0.030  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEE-eCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIAL-DKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~av-D~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .+..||=.| |+|+.+.++|..+ ..+.+|+.+ +.+++..+.+.+.++..+ .++.++..|..+...-. ..+.-...+
T Consensus        25 ~~k~vlITG-as~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~  102 (272)
T 4e3z_A           25 DTPVVLVTG-GSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESG-GEAVAIPGDVGNAADIAAMFSAVDRQF  102 (272)
T ss_dssp             CSCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            355666555 5677787777754 344567665 788888888888887766 36888889987652100 000000111


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                        +.+|.++.++-
T Consensus       103 --g~id~li~nAg  113 (272)
T 4e3z_A          103 --GRLDGLVNNAG  113 (272)
T ss_dssp             --SCCCEEEECCC
T ss_pred             --CCCCEEEECCC
Confidence              47899998764

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=82.42  E-value=7.8  Score=34.92  Aligned_cols=86  Identities=10%  Similarity=0.054  Sum_probs=51.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcC-CC---cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhh
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMN-DT---GTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMK  160 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~-~~---~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~  160 (397)
                      +.+||=.| |+|+.+.+++..+. .+   .+|++++.++...+.+++..+. + .++.++..|..+...-. ..+.-...
T Consensus        21 ~k~vlITG-asggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~-~-~~~~~~~~Dl~~~~~v~~~~~~~~~~   97 (267)
T 1sny_A           21 MNSILITG-CNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN-H-SNIHILEIDLRNFDAYDKLVADIEGV   97 (267)
T ss_dssp             CSEEEESC-CSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH-C-TTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CCEEEEEC-CCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhcc-C-CceEEEEecCCChHHHHHHHHHHHHh
Confidence            55677666 46888888887653 33   5899999988776655443332 3 36888999987652100 00000011


Q ss_pred             hcccCccEEEEcCC
Q psy17793        161 LQKESFDRILLDAP  174 (397)
Q Consensus       161 ~~~~~fD~Il~DpP  174 (397)
                      +....+|.|+.++-
T Consensus        98 ~g~~~id~li~~Ag  111 (267)
T 1sny_A           98 TKDQGLNVLFNNAG  111 (267)
T ss_dssp             HGGGCCSEEEECCC
T ss_pred             cCCCCccEEEECCC
Confidence            11116899998664

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=82.17  E-value=11  Score=32.18  Aligned_cols=73  Identities=14%  Similarity=0.111  Sum_probs=48.0

Q ss_pred             eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc-ccCc
Q psy17793         88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ-KESF  166 (397)
Q Consensus        88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~-~~~f  166 (397)
                      +||=.| |+|+.+.+++..+... +|++++.++..++.+.+.+.     . .++..|..+...     .. ..+. .+.+
T Consensus         2 ~vlVtG-asg~iG~~la~~l~~~-~V~~~~r~~~~~~~~~~~~~-----~-~~~~~D~~~~~~-----~~-~~~~~~~~i   67 (207)
T 2yut_A            2 RVLITG-ATGGLGGAFARALKGH-DLLLSGRRAGALAELAREVG-----A-RALPADLADELE-----AK-ALLEEAGPL   67 (207)
T ss_dssp             EEEEET-TTSHHHHHHHHHTTTS-EEEEECSCHHHHHHHHHHHT-----C-EECCCCTTSHHH-----HH-HHHHHHCSE
T ss_pred             EEEEEc-CCcHHHHHHHHHHHhC-CEEEEECCHHHHHHHHHhcc-----C-cEEEeeCCCHHH-----HH-HHHHhcCCC
Confidence            344444 6788999999988777 99999999988776655432     1 667778765420     00 0011 1478


Q ss_pred             cEEEEcCC
Q psy17793        167 DRILLDAP  174 (397)
Q Consensus       167 D~Il~DpP  174 (397)
                      |.|+..+-
T Consensus        68 d~vi~~ag   75 (207)
T 2yut_A           68 DLLVHAVG   75 (207)
T ss_dssp             EEEEECCC
T ss_pred             CEEEECCC
Confidence            99998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	397
d1ixka_	313	c.66.1.38 (A:) Hypothetical methyltransferase PH13	4e-22
d1sqga2	284	c.66.1.38 (A:145-428) Ribosomal RNA small subunit	2e-20
d2b9ea1	293	c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens)	3e-20
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	2e-09
d2as0a2	324	c.66.1.51 (A:73-396) Hypothetical protein PH1915,	6e-09
d1wxxa2	318	c.66.1.51 (A:65-382) Hypothetical protein TTHA1280	1e-08
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	4e-05
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	9e-05
d1m6ya2	192	c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf	8e-04
d2b78a2	317	c.66.1.51 (A:69-385) Hypothetical protein SMu776,	0.001

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 313

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 93.6 bits (231), Expect = 4e-22
 Identities = 69/243 (28%), Positives = 99/243 (40%), Gaps = 30/243 (12%)

Query: 69  LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEE 128
           +Q   S+     LD +PG+ V DM AAPG K +++A LM + G + A D  + R+ +   
Sbjct: 100 IQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRL 159

Query: 129 TIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNAN 188
            + +L + ++      S  I                 FD+ILLDAPC+G G         
Sbjct: 160 NLSRLGVLNVILFHSSSLHIGE-----------LNVEFDKILLDAPCTGSGTIHKNPER- 207

Query: 189 SFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVI 248
                        N     ++           +G+ +LK  GILVY TCSL  EENE VI
Sbjct: 208 -----------KWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVI 256

Query: 249 AWILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICK 308
            W L       L     +  +      +L  E +   +     L P    T   GFFI K
Sbjct: 257 QWALDNFDVELLPLKYGEPALTNPFGIELSEEIKNARR-----LYPDVHETS--GFFIAK 309

Query: 309 LRK 311
           +RK
Sbjct: 310 IRK 312

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 284

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 87.8 bits (216), Expect = 2e-20
 Identities = 63/242 (26%), Positives = 99/242 (40%), Gaps = 44/242 (18%)

Query: 70  QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEET 129
           Q+  +     +L  Q G+ +LD+CAAPG K THI  +  +    +A+D  + R++++ + 
Sbjct: 87  QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQV-VAVDIDEQRLSRVYDN 145

Query: 130 IKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANS 189
           +K+L + +                         ++ FDRILLDAPCS  G      +   
Sbjct: 146 LKRLGMKATVKQGDGRYPSQ----------WCGEQQFDRILLDAPCSATGVIRRHPDIKW 195

Query: 190 FLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIA 249
               D+ I   A +Q ++L A++  +           K  G LVY TCS+  EEN   I 
Sbjct: 196 LRR-DRDIPELAQLQSEILDAIWPHL-----------KTGGTLVYATCSVLPEENSLQIK 243

Query: 250 WILHRHPEVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFICKL 309
             L R  + EL                    +    ++ G   +P     D  GFF  KL
Sbjct: 244 AFLQRTADAELC-------------------ETGTPEQPGKQNLPGAEEGD--GFFYAKL 282

Query: 310 RK 311
            K
Sbjct: 283 IK 284

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (216), Expect = 3e-20
 Identities = 62/245 (25%), Positives = 91/245 (37%), Gaps = 30/245 (12%)

Query: 68  ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLE 127
           ILQ+  S L    LD  PG  V+D CAAPGNK +H+A L+ + G + A D    R+  + 
Sbjct: 77  ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 136

Query: 128 ETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNA 187
             + +  +S  +    D   ++            +      ILLD  CSG          
Sbjct: 137 TLLARAGVSCCELAEEDFLAVS--------PSDPRYHEVHYILLDPSCSGS--------- 179

Query: 188 NSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAV 247
               +   +           L A+  F        +        LVY TCSL  EENE V
Sbjct: 180 -GMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALT-FPSLQRLVYSTCSLCQEENEDV 237

Query: 248 IAWILHRHP-EVELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDRNTDTIGFFI 306
           +   L ++P    L   LP    +GL+             R  P        T + GFF+
Sbjct: 238 VRDALQQNPGAFRLAPALPAWPHRGLS----TFPGAEHCLRASP------ETTLSSGFFV 287

Query: 307 CKLRK 311
             + +
Sbjct: 288 AVIER 292

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 2e-09
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 79  HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
             +D+ PG  VL+  +  G     ++  +   G +I+ +  K      ++  K  + S  
Sbjct: 92  SMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWK 151

Query: 139 QTHVYDSTRINTSSQIDIER--MKLQKESFDRILLDAP 174
            +HV +          DI      ++  +FD + LD  
Sbjct: 152 LSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML 189

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 54.5 bits (130), Expect = 6e-09
 Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 36/185 (19%)

Query: 83  VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV 142
           VQPG +VLD+    G     I   +     +I +DKS   +   +E  K   +      +
Sbjct: 143 VQPGDRVLDVFTYTGGFA--IHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFI 200

Query: 143 YDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN 202
             S          +E+++ + E FD ++LD P     +              K +K+   
Sbjct: 201 VGSAFEE------MEKLQKKGEKFDIVVLDPPAFVQHE--------------KDLKAGLR 240

Query: 203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEEN---EAVIAWILHRHPEVE 259
               +  A              L+K  GILV C+CS  V+     + +IA        ++
Sbjct: 241 AYFNVNFAGLN-----------LVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLK 289

Query: 260 LVQTL 264
           +++  
Sbjct: 290 MLEPY 294

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} Length = 318

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

 Score = 53.3 bits (127), Expect = 1e-08
 Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 38/210 (18%)

Query: 60  VALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKS 119
           V L +       L       Y++   G++ LD+ +  G    H+AL   +    +A+D S
Sbjct: 120 VDLRAGQKTGAYLDQRENRLYMERFRGERALDVFSYAGGFALHLALGFREV---VAVDSS 176

Query: 120 KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG 179
              + + EE  +   L +++    ++  +         R++ + E FD ++LD P    G
Sbjct: 177 AEALRRAEENARLNGLGNVRVLEANAFDLLR-------RLEKEGERFDLVVLDPPAFAKG 229

Query: 180 QRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL 239
           ++ +                     K++     +           LLK+ GIL   +CS 
Sbjct: 230 KKDVER--------------AYRAYKEVNLRAIK-----------LLKEGGILATASCSH 264

Query: 240 SVEEN---EAVIAWILHRHPEVELVQTLPQ 266
            + E      V       H  + +V+   Q
Sbjct: 265 HMTEPLFYAMVAEAAQDAHRLLRVVEKRGQ 294

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 75  ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIK 131
           IL GH L ++  ++VL + AA G  ++H+A ++++   + A++ S     KL E ++
Sbjct: 46  ILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEG-IIYAVEYSAKPFEKLLELVR 101

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 41.2 bits (96), Expect = 9e-05
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 11/113 (9%)

Query: 79  HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
               ++PG+ VL +  A G   +H++ ++   G +  ++ S   + +L   +++ +    
Sbjct: 67  KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVP 126

Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFL 191
                             E  +      D I  D        + +  NA  +L
Sbjct: 127 ILGDAT----------KPEEYRALVPKVDVIFEDVAQPTQ-AKILIDNAEVYL 168

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.8 bits (87), Expect = 8e-04
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 8/98 (8%)

Query: 79  HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI 138
            +L  +  + +LD     G   +   L       +I +D     +   EE +        
Sbjct: 17  EFLKPEDEKIILDCTVGEG-GHSRAILEHCPGCRIIGIDVDSEVLRIAEEKL-------K 68

Query: 139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCS 176
           +     S    +  + D     L  E  D IL+D   S
Sbjct: 69  EFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVS 106

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} Length = 317

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 29/184 (15%), Positives = 65/184 (35%), Gaps = 35/184 (19%)

Query: 85  PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYD 144
            G+ VL++ +         A+      T + L K    ++        L +++ Q  V D
Sbjct: 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMD 203

Query: 145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQ 204
                       +  +    ++D I++D P                        S+A  +
Sbjct: 204 VFDYF-------KYARRHHLTYDIIIIDPP------------------------SFARNK 232

Query: 205 KKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS--LSVEENEAVIAWILHRH-PEVELV 261
           K++      +  L   QG+ +L ++G+++  T +  ++V + +  I     +       +
Sbjct: 233 KEVFSVSKDYHKLI-RQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 291

Query: 262 QTLP 265
           Q LP
Sbjct: 292 QQLP 295

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	397
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	100.0
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	100.0
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.9
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.85
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.84
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.72
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.63
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.62
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.62
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.59
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.59
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.58
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.58
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.57
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.56
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.55
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.54
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.52
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.51
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.5
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.48
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.46
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.45
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.43
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.39
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.38
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.37
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.36
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.35
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.35
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.33
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.33
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.32
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.31
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.3
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.3
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.28
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.27
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.27
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.27
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.26
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.25
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.25
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.25
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.23
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.22
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.22
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.21
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	99.19
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.19
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.19
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.19
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.16
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.14
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.14
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.13
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.11
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.1
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	99.1
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.06
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.04
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.02
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.01
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.01
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.0
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.0
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.95
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.95
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.94
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.92
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.91
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.9
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.88
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.87
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.87
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.84
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.78
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.73
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.72
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.65
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.41
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.37
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.34
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.29
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.27
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.26
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.23
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.23
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.19
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.17
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.1
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.1
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.0
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.88
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.87
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.67
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.47
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.29
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.21
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.18
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.17
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.07
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	97.0
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	96.95
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.92
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.9
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.87
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.85
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	96.79
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.76
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.73
d2apoa1	85	Pseudouridine synthase II TruB, C-terminal domain	96.53
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	96.52
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.11
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.1
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.08
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.06
d1q7ha1	85	Hypothetical protein Ta1423, C-terminal domain {Ar	95.9
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.7
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.66
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.62
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.6
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.52
d2ey4a1	84	Pseudouridine synthase II TruB, C-terminal domain	95.42
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.42
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.25
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.12
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.01
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.84
d1iq8a3	77	Archaeosine tRNA-guanine transglycosylase, C3 doma	94.56
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.49
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	94.45
d2cx1a1	93	Hypothetical protein APE0525, C-terminal domain {A	94.23
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.18
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.13
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	93.78
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	93.73
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.6
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.54
d1r3ea1	81	Pseudouridine synthase II TruB, C-terminal domain	93.42
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.35
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.77
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	92.77
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	92.69
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.47
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.42
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.29
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	91.87
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	91.74
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	91.52
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	91.17
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	90.91
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	90.3
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	89.83
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	89.57
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	89.39
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	89.28
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	89.18
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	88.59
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	88.51
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	88.19
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	87.86
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	86.75
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	86.64
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	86.45
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	86.39
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	86.34
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	85.2
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	85.1
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	84.87
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	84.71
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	84.54
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	84.42
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	84.37
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	83.51
d2q07a1	68	Uncharacterized protein AF0587 {Archaeoglobus fulg	83.32
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	83.24
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	83.21
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	82.93
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	82.79
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	82.34
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	82.16
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	81.83
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	81.62

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-49  Score=380.62  Aligned_cols=220  Identities=31%  Similarity=0.452  Sum_probs=186.3

Q ss_pred             ccceEEEEccccccCCCcccCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHH
Q psy17793         43 FRGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPR  122 (397)
Q Consensus        43 ~~gi~v~~~~~~~~~p~~~~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~r  122 (397)
                      +.++.+.....+...|.  +..|++++||++|++++.+|++++|++|||+||||||||+++|+++. .+.|+|+|+++.|
T Consensus        62 p~~l~l~~~~~l~~~~~--~~~G~~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R  138 (284)
T d1sqga2          62 PDAVRLETPAPVHALPG--FEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQR  138 (284)
T ss_dssp             TTEEEESSCCCGGGSTT--GGGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTT
T ss_pred             CccceeccccchhhChh--hhccEEEeccccccccccccCccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhh
Confidence            34444443333444443  57999999999999999999999999999999999999999999875 4899999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCC---CCcccccccCccchHHHHHH
Q psy17793        123 VTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFG---QRPMFYNANSFLNLDKKIKS  199 (397)
Q Consensus       123 l~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G---~~p~~~~~~s~~~~~~~~~~  199 (397)
                      ++.++++++++|++++.+...|.....          ....+.||+||+||||||+|   ++|++.+.++    ...+..
T Consensus       139 ~~~l~~~~~r~g~~~~~~~~~~~~~~~----------~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~----~~~~~~  204 (284)
T d1sqga2         139 LSRVYDNLKRLGMKATVKQGDGRYPSQ----------WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRR----DRDIPE  204 (284)
T ss_dssp             HHHHHHHHHHTTCCCEEEECCTTCTHH----------HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCC----TTHHHH
T ss_pred             hhhHhhhhhcccccceeeeccccccch----------hcccccccEEEEeccccccCccccccchhhccc----cchhhH
Confidence            999999999999998877766654321          12346799999999999999   4899999998    789999


Q ss_pred             HHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCCCCccCCCch
Q psy17793        200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMKGLAHKDLEA  279 (397)
Q Consensus       200 l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~g~~~~~~~~  279 (397)
                      ++.+|++||.+           |+++||+||+|||||||++++|||+||+++|++++++++++.....            
T Consensus       205 l~~lQ~~iL~~-----------a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~~~~~~~~~~------------  261 (284)
T d1sqga2         205 LAQLQSEILDA-----------IWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPE------------  261 (284)
T ss_dssp             HHHHHHHHHHH-----------HGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEECSSBCSS------------
T ss_pred             HHHHHHHHHHH-----------HHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCCCcEEecCCCCC------------
Confidence            99999999999           9999999999999999999999999999999999999987643211            


Q ss_pred             hhhcceEEeCCCCCCCCCCCCCCcEEEEeeec
Q psy17793        280 EDQAVMQRFGPPLIPTDRNTDTIGFFICKLRK  311 (397)
Q Consensus       280 ~~~~~~~r~~P~~~t~~~~~~t~GFFiA~l~K  311 (397)
                         ....|++|+      .++|+|||+|+|+|
T Consensus       262 ---~~~~~~~P~------~~~~dGFF~A~l~K  284 (284)
T d1sqga2         262 ---QPGKQNLPG------AEEGDGFFYAKLIK  284 (284)
T ss_dssp             ---SBSEEECCC------TTSCCSEEEEEEEC
T ss_pred             ---CCcEEECCC------CCCcccEEEEEEEC
Confidence               123677785      68999999999987

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2.5e-48  Score=378.72  Aligned_cols=216  Identities=35%  Similarity=0.512  Sum_probs=182.1

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      +.+|++++||++|++++.+|++++|++|||+||||||||++++.++.+.+.|+|+|+++.|++.++++++++|+.|+.+.
T Consensus        93 ~~~G~~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~  172 (313)
T d1ixka_          93 FLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILF  172 (313)
T ss_dssp             HHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             hhhceEEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccc
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      ..|.....           .....||+||+||||||+|+   +|+..+.++    .+++..++.+|++||.+        
T Consensus       173 ~~d~~~~~-----------~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~----~~~~~~l~~~Q~~iL~~--------  229 (313)
T d1ixka_         173 HSSSLHIG-----------ELNVEFDKILLDAPCTGSGTIHKNPERKWNRT----MDDIKFCQGLQMRLLEK--------  229 (313)
T ss_dssp             SSCGGGGG-----------GGCCCEEEEEEECCTTSTTTCC--------CC----HHHHHHHHHHHHHHHHH--------
T ss_pred             cccccccc-----------cccccccEEEEccccccCCceeeccchhhhhh----hhHHHHHHHHHHHHHHh--------
Confidence            88887652           23468999999999999994   788888888    79999999999999999        


Q ss_pred             cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCCcEEEecCcccCCC-CCccCCCchhhhcceEEeCCCCCCCCC
Q psy17793        219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPEVELVQTLPQLGMK-GLAHKDLEAEDQAVMQRFGPPLIPTDR  297 (397)
Q Consensus       219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~~~~~~~~-g~~~~~~~~~~~~~~~r~~P~~~t~~~  297 (397)
                         |+++|||||+|||||||++++|||+||+++|+++ +++++++....+.. ......+. +....+.|++|+      
T Consensus       230 ---a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~P~------  298 (313)
T d1ixka_         230 ---GLEVLKPGGILVYSTCSLEPEENEFVIQWALDNF-DVELLPLKYGEPALTNPFGIELS-EEIKNARRLYPD------  298 (313)
T ss_dssp             ---HHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHS-SEEEECCCSSEECCSSGGGCCCC-GGGGGSEEECTT------
T ss_pred             ---hhheeCCCcEEEEeeccCChHhHHHHHHHHHhcC-CCEEeecccCCccccCccccccc-cccCCcEEECCC------
Confidence               9999999999999999999999999999999988 68888775432111 01111111 234567899995      


Q ss_pred             CCCCCcEEEEeeec
Q psy17793        298 NTDTIGFFICKLRK  311 (397)
Q Consensus       298 ~~~t~GFFiA~l~K  311 (397)
                      .++|+|||+|+|+|
T Consensus       299 ~~~~dGfFiA~l~K  312 (313)
T d1ixka_         299 VHETSGFFIAKIRK  312 (313)
T ss_dssp             TSSSCSEEEEEEEE
T ss_pred             CCCcccEEEEEEEE
Confidence            67999999999987

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-48  Score=371.94  Aligned_cols=218  Identities=30%  Similarity=0.444  Sum_probs=176.9

Q ss_pred             cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q psy17793         62 LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTH  141 (397)
Q Consensus        62 ~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~  141 (397)
                      +++|++++||++|++++++|++++|++|||+|||||+||+++|+++++.++|+|+|+++.|++.+++|++++|++++.+.
T Consensus        71 ~~~G~~~~QD~sS~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~  150 (293)
T d2b9ea1          71 YRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELA  150 (293)
T ss_dssp             HHTTSEEECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             HhCcEEEEcCCcccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeee
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        142 VYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       142 ~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      ..|+..+...      .+  ..++||+||+||||||+|+   +|+..+.+++.  ...+..++.+|+++|.+        
T Consensus       151 ~~d~~~~~~~------~~--~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~--~~~~~~l~~~Q~~il~~--------  212 (293)
T d2b9ea1         151 EEDFLAVSPS------DP--RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPS--PVRLHALAGFQQRALCH--------  212 (293)
T ss_dssp             ECCGGGSCTT------CG--GGTTEEEEEECCCCCC--------------------CCHHHHHHHHHHHHHH--------
T ss_pred             ehhhhhhccc------cc--ccceeeEEeecCcccchhhhcccchhhccCCcc--hhhHHHHhhhhHHhHHH--------
Confidence            9999876321      01  1257999999999999994   67776665410  23467899999999999        


Q ss_pred             cccccccccCCcEEEEEecCCCccccHHHHHHHHHHCCC-cEEEecCcccCCCCCccCCCchhhhcceEEeCCCCCCCCC
Q psy17793        219 DWQGIPLLKKDGILVYCTCSLSVEENEAVIAWILHRHPE-VELVQTLPQLGMKGLAHKDLEAEDQAVMQRFGPPLIPTDR  297 (397)
Q Consensus       219 ~~~a~~lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~~~-~~l~~~~~~~~~~g~~~~~~~~~~~~~~~r~~P~~~t~~~  297 (397)
                         |+. ||+||+|||||||++++|||+||+++|+++++ +++++..+.++..+....    ...+.+.|++|+      
T Consensus       213 ---a~~-l~~gG~lvYsTCSl~~~ENe~vV~~~L~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~r~~P~------  278 (293)
T d2b9ea1         213 ---ALT-FPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTF----PGAEHCLRASPE------  278 (293)
T ss_dssp             ---HTT-CTTCCEEEEEESCCCGGGTHHHHHHHHTTSTTTEEECCCCTTCCCBCCSSS----TTGGGSEEECHH------
T ss_pred             ---hhh-cccccEEEEeeccCChhHhHHHHHHHHHhCCCCEEeccCcccccccccccC----CCCCCEEEECCC------
Confidence               885 69999999999999999999999999999997 778777666655443321    123467899885      


Q ss_pred             CCCCCcEEEEeeec
Q psy17793        298 NTDTIGFFICKLRK  311 (397)
Q Consensus       298 ~~~t~GFFiA~l~K  311 (397)
                      .++|+|||+|+|+|
T Consensus       279 ~~~~dGfFiA~L~k  292 (293)
T d2b9ea1         279 TTLSSGFFVAVIER  292 (293)
T ss_dssp             HHSSCSEEEEEEEE
T ss_pred             CCCccCEEEEEEEE
Confidence            57899999999987

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=5.9e-24  Score=206.21  Aligned_cols=181  Identities=22%  Similarity=0.257  Sum_probs=142.1

Q ss_pred             ccceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHH
Q psy17793         43 FRGVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP  121 (397)
Q Consensus        43 ~~gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~  121 (397)
                      ++.+.+++.+..|.++... +++|.|+.|.....+.    ....|++|||+|||+|++++++|.   +..+|+++|+|+.
T Consensus       106 ~~~~~v~E~G~~f~v~l~~~~~tG~flDqr~~r~~~----~~~~g~rVLDl~~gtG~~s~~~a~---g~~~V~~vD~s~~  178 (318)
T d1wxxa2         106 PERVQVQEGRVRYLVDLRAGQKTGAYLDQRENRLYM----ERFRGERALDVFSYAGGFALHLAL---GFREVVAVDSSAE  178 (318)
T ss_dssp             CSEEEEEETTEEEEEECSTTSCCCCCGGGHHHHHHG----GGCCEEEEEEETCTTTHHHHHHHH---HEEEEEEEESCHH
T ss_pred             cceEEEEECCEEEEEechhccccccchhhhhhHHHH----HHhCCCeeeccCCCCcHHHHHHHh---cCCcEEeecchHH
Confidence            4567788888777765544 8999999998876543    234689999999999999998875   3578999999999


Q ss_pred             HHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHH
Q psy17793        122 RVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYA  201 (397)
Q Consensus       122 rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~  201 (397)
                      +++.+++|++++|++++++++.|+.++...       .....++||+|++||||++.+.              ..+....
T Consensus       179 al~~a~~n~~~ngl~~~~~i~~d~~~~~~~-------~~~~~~~fD~Vi~DpP~~~~~~--------------~~~~~~~  237 (318)
T d1wxxa2         179 ALRRAEENARLNGLGNVRVLEANAFDLLRR-------LEKEGERFDLVVLDPPAFAKGK--------------KDVERAY  237 (318)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEESCHHHHHHH-------HHHTTCCEEEEEECCCCSCCST--------------TSHHHHH
T ss_pred             HHHHHHHHHHHcCCCCcceeeccHHHHhhh-------hHhhhcCCCEEEEcCCccccch--------------HHHHHHH
Confidence            999999999999999999999999876321       1223568999999999998663              2233334


Q ss_pred             HHHHHHHHHHhhhhccccccccccccCCcEEEEEecC--CCccccHHHHHHHHHHCC-CcEEEe
Q psy17793        202 NIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS--LSVEENEAVIAWILHRHP-EVELVQ  262 (397)
Q Consensus       202 ~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS--~~~eEnE~vV~~~L~~~~-~~~l~~  262 (397)
                      ..+.+++..           +.++|||||.|+|+|||  +..++.+++|........ .++++.
T Consensus       238 ~~~~~l~~~-----------a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~~  290 (318)
T d1wxxa2         238 RAYKEVNLR-----------AIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE  290 (318)
T ss_dssp             HHHHHHHHH-----------HHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHH-----------HHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            445888999           99999999999999999  566777888877766653 466654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=1.8e-21  Score=189.04  Aligned_cols=176  Identities=22%  Similarity=0.258  Sum_probs=133.1

Q ss_pred             cceEEEEccccccCCCcccCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHH
Q psy17793         44 RGVAVEITNVLSQVPNVALDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRV  123 (397)
Q Consensus        44 ~gi~v~~~~~~~~~p~~~~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl  123 (397)
                      ....+++.+..+..+..++++|.+..|.....++...+  ++|++|||+|||+|++++++|..  +..+|+++|+|+.++
T Consensus       106 ~~~~v~e~~~~~~~~~~~~~tG~flDqr~~r~~~~~~~--~~g~~VLDl~~g~G~~si~~a~~--ga~~V~~vD~s~~al  181 (324)
T d2as0a2         106 YRTIIQEGRAKFIVDMRGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAI  181 (324)
T ss_dssp             CEEEEEETTEEEEEESSSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHH
T ss_pred             ceEEEEcCCEEEEecccccccCcccchhhHHHHHHhhc--CCCCeeecccCcccchhhhhhhc--CCcEEEeecCCHHHH
Confidence            33445555555544443478999999998888887654  67899999999999999988873  556999999999999


Q ss_pred             HHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHH
Q psy17793        124 TKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYAN  202 (397)
Q Consensus       124 ~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~  202 (397)
                      +.+++|++.+|+. +++++++|+......       ......+||+|++||||++.+.              +.......
T Consensus       182 ~~a~~N~~~ngl~~~~~~~~~d~~~~~~~-------~~~~~~~fD~Vi~DpP~~~~~~--------------~~~~~~~~  240 (324)
T d2as0a2         182 ETAKENAKLNGVEDRMKFIVGSAFEEMEK-------LQKKGEKFDIVVLDPPAFVQHE--------------KDLKAGLR  240 (324)
T ss_dssp             HHHHHHHHHTTCGGGEEEEESCHHHHHHH-------HHHTTCCEEEEEECCCCSCSSG--------------GGHHHHHH
T ss_pred             HHHHHHHHHcCCCccceeeechhhhhhHH-------HHhccCCCCchhcCCccccCCH--------------HHHHHHHH
Confidence            9999999999995 689999998765311       1224568999999999987542              12222223


Q ss_pred             HHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC--ccccHHHHHHHHHHC
Q psy17793        203 IQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS--VEENEAVIAWILHRH  255 (397)
Q Consensus       203 ~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~--~eEnE~vV~~~L~~~  255 (397)
                      .+.+++..           |.++|||||+|+|+|||-+  .++..+.|.....+.
T Consensus       241 ~y~~l~~~-----------a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~  284 (324)
T d2as0a2         241 AYFNVNFA-----------GLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKA  284 (324)
T ss_dssp             HHHHHHHH-----------HHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHH-----------HHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHc
Confidence            34778888           9999999999999999954  455556666665554

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.84  E-value=2.7e-21  Score=187.13  Aligned_cols=184  Identities=14%  Similarity=0.121  Sum_probs=134.4

Q ss_pred             ccceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHH
Q psy17793         43 FRGVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKP  121 (397)
Q Consensus        43 ~~gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~  121 (397)
                      ++.+.+++.+..+.++... +++|+|+.|.......+..  ..+|++|||+|||+|++++++|.  ++...|+++|+|+.
T Consensus       103 ~~~~~v~E~Gl~f~vdl~~g~ktGlflDqR~~r~~l~~~--~~~g~~VLdlf~~~G~~sl~aa~--~ga~~V~~vD~s~~  178 (317)
T d2b78a2         103 PEQFLILENGISYNVFLNDGLMTGIFLDQRQVRNELING--SAAGKTVLNLFSYTAAFSVAAAM--GGAMATTSVDLAKR  178 (317)
T ss_dssp             CSSEEEEETTEEEEECSSSSSCCSSCGGGHHHHHHHHHT--TTBTCEEEEETCTTTHHHHHHHH--TTBSEEEEEESCTT
T ss_pred             CcceeeeeCCEEEEEEcccccccCCcHHHHHHHHHHHHH--hhCCCceeecCCCCcHHHHHHHh--CCCceEEEecCCHH
Confidence            4667788888778776555 8999998888765443322  34689999999999999988776  45668999999999


Q ss_pred             HHHHHHHHHHHhCCC--cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHH
Q psy17793        122 RVTKLEETIKKLQLS--SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKS  199 (397)
Q Consensus       122 rl~~l~~n~~~~g~~--~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~  199 (397)
                      +++.+++|++.+|+.  +++++.+|+..+...       .....++||+|++|||+.+....              .+..
T Consensus       179 a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~-------~~~~~~~fD~Ii~DPP~f~~~~~--------------~~~~  237 (317)
T d2b78a2         179 SRALSLAHFEANHLDMANHQLVVMDVFDYFKY-------ARRHHLTYDIIIIDPPSFARNKK--------------EVFS  237 (317)
T ss_dssp             HHHHHHHHHHHTTCCCTTEEEEESCHHHHHHH-------HHHTTCCEEEEEECCCCC-------------------CCCC
T ss_pred             HHHHHHHHHHHhcccCcceEEEEccHHHHHHH-------HHhhcCCCCEEEEcChhhccchh--------------HHHH
Confidence            999999999999984  699999999876421       11234689999999998764321              1111


Q ss_pred             HHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC--CCccccHHHHHHHHHHCCCcEEEec
Q psy17793        200 YANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS--LSVEENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       200 l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS--~~~eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                      ...-+.+|+..           +.++|+|||.|+|+|||  +..++.++.|...+.+. +..+..+
T Consensus       238 ~~~~~~~L~~~-----------a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~-~~~~~~~  291 (317)
T d2b78a2         238 VSKDYHKLIRQ-----------GLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQ-KHTYLDL  291 (317)
T ss_dssp             HHHHHHHHHHH-----------HHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTC-CCEEEEE
T ss_pred             HHHHHHHHHHH-----------HHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence            12223678888           99999999999999999  44555566777666544 4455443

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.72  E-value=6.6e-18  Score=162.01  Aligned_cols=178  Identities=15%  Similarity=0.035  Sum_probs=128.9

Q ss_pred             ccceEEEEccccccCCCcc-cCCCcEEEechhHHHHHhccC-CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCH
Q psy17793         43 FRGVAVEITNVLSQVPNVA-LDSSMGILQNLPSILAGHYLD-VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSK  120 (397)
Q Consensus        43 ~~gi~v~~~~~~~~~p~~~-~~~g~~~~Qd~~S~l~~~~L~-~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~  120 (397)
                      |+...|++.+..+.++... .++|.|..|.....++...+. ...|.+|||+|||+|++++++|.   .+.+|++||.|+
T Consensus        88 p~~~~v~e~gl~f~v~~~~~~~tG~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~---~GA~V~~VD~s~  164 (309)
T d2igta1          88 GETWPLSLLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAA---AGAEVTHVDASK  164 (309)
T ss_dssp             CSEEEEEETTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHH---TTCEEEEECSCH
T ss_pred             CCeEEEEEeEEEEEEeccCCCccccccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHh---CCCeEEEEeChH
Confidence            5667788887777765544 899999999999888776553 45688999999999999998877   345899999999


Q ss_pred             HHHHHHHHHHHHhCCC--cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHH
Q psy17793        121 PRVTKLEETIKKLQLS--SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIK  198 (397)
Q Consensus       121 ~rl~~l~~n~~~~g~~--~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~  198 (397)
                      .+++.+++|++.+|+.  ++++++.|+.++...       ......+||+|++|||+.+.+..-..   +.   +...  
T Consensus       165 ~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~-------~~~~~~~fD~IilDPP~f~~~~~~~~---~~---~~~~--  229 (309)
T d2igta1         165 KAIGWAKENQVLAGLEQAPIRWICEDAMKFIQR-------EERRGSTYDIILTDPPKFGRGTHGEV---WQ---LFDH--  229 (309)
T ss_dssp             HHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHH-------HHHHTCCBSEEEECCCSEEECTTCCE---EE---HHHH--
T ss_pred             HHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHH-------HhhcCCCCCEEEECCCcccccccchh---HH---HHHH--
Confidence            9999999999999986  499999999877421       11234689999999998776542111   11   1111  


Q ss_pred             HHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC---CccccHHHHHHHHHH
Q psy17793        199 SYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL---SVEENEAVIAWILHR  254 (397)
Q Consensus       199 ~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~---~~eEnE~vV~~~L~~  254 (397)
                           +..++..           +.++|+|||.++++||+-   .+++-++.+...+..
T Consensus       230 -----~~~l~~~-----------~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~  272 (309)
T d2igta1         230 -----LPLMLDI-----------CREILSPKALGLVLTAYSIRASFYSMHELMRETMRG  272 (309)
T ss_dssp             -----HHHHHHH-----------HHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTT
T ss_pred             -----HHHHHHH-----------HHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence                 2345666           888999999766666542   233334444444433

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.63  E-value=1.5e-15  Score=134.87  Aligned_cols=135  Identities=13%  Similarity=0.129  Sum_probs=104.4

Q ss_pred             HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccch
Q psy17793         75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQ  153 (397)
Q Consensus        75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~  153 (397)
                      .++...+++++|++|||+|||+|..|..+|..   .++|+|+|+|+.+++.+++|++++|+. +|+++.+|+....    
T Consensus        23 ~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~----   95 (186)
T d1l3ia_          23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL----   95 (186)
T ss_dssp             HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH----
T ss_pred             HHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc----
Confidence            33445689999999999999999999988763   469999999999999999999999994 8999999987653    


Q ss_pred             hhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793        154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV  233 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv  233 (397)
                             .....||.|+++.+                   ....       .++++.           +.++|||||+++
T Consensus        96 -------~~~~~~D~v~~~~~-------------------~~~~-------~~~~~~-----------~~~~LkpgG~lv  131 (186)
T d1l3ia_          96 -------CKIPDIDIAVVGGS-------------------GGEL-------QEILRI-----------IKDKLKPGGRII  131 (186)
T ss_dssp             -------TTSCCEEEEEESCC-------------------TTCH-------HHHHHH-----------HHHTEEEEEEEE
T ss_pred             -------cccCCcCEEEEeCc-------------------cccc-------hHHHHH-----------HHHHhCcCCEEE
Confidence                   23468999999764                   0111       345666           888999999999


Q ss_pred             EEecCCCccccHHHHHHHHHHCC-CcEEEec
Q psy17793        234 YCTCSLSVEENEAVIAWILHRHP-EVELVQT  263 (397)
Q Consensus       234 ysTCS~~~eEnE~vV~~~L~~~~-~~~l~~~  263 (397)
                      ++..+   .|+...+...++++. +.+.+.+
T Consensus       132 i~~~~---~e~~~~~~~~l~~~~~~~~~~~~  159 (186)
T d1l3ia_         132 VTAIL---LETKFEAMECLRDLGFDVNITEL  159 (186)
T ss_dssp             EEECB---HHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             EEeec---cccHHHHHHHHHHcCCCeEEEEE
Confidence            87443   466666777777763 4555543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=1.6e-15  Score=142.67  Aligned_cols=140  Identities=19%  Similarity=0.265  Sum_probs=107.4

Q ss_pred             EEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEccc
Q psy17793         67 GILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDS  145 (397)
Q Consensus        67 ~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~  145 (397)
                      -++..+.+.++...|+++||++|||+|||+|+.|.++|..+++.|+|+++|+++.+++.+++|++++|+ +++.+...|.
T Consensus        85 qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~  164 (266)
T d1o54a_          85 QIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI  164 (266)
T ss_dssp             CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG
T ss_pred             cccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc
Confidence            345556677788899999999999999999999999999998899999999999999999999999997 4688888886


Q ss_pred             ccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q psy17793        146 TRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPL  225 (397)
Q Consensus       146 ~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~l  225 (397)
                      ...            +....||.|++|.|.                 .           .+.|++           +.++
T Consensus       165 ~~~------------~~~~~~D~V~~d~p~-----------------p-----------~~~l~~-----------~~~~  193 (266)
T d1o54a_         165 SEG------------FDEKDVDALFLDVPD-----------------P-----------WNYIDK-----------CWEA  193 (266)
T ss_dssp             GGC------------CSCCSEEEEEECCSC-----------------G-----------GGTHHH-----------HHHH
T ss_pred             ccc------------ccccceeeeEecCCC-----------------H-----------HHHHHH-----------HHhh
Confidence            443            344679999999881                 1           234556           8889


Q ss_pred             ccCCcEEE-EEecCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793        226 LKKDGILV-YCTCSLSVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       226 LkpgG~lv-ysTCS~~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                      |||||+|+ |+.|.   +.-+ -+...|+++ +|..+.
T Consensus       194 LKpGG~lv~~~P~~---~Qv~-~~~~~l~~~-gF~~i~  226 (266)
T d1o54a_         194 LKGGGRFATVCPTT---NQVQ-ETLKKLQEL-PFIRIE  226 (266)
T ss_dssp             EEEEEEEEEEESSH---HHHH-HHHHHHHHS-SEEEEE
T ss_pred             cCCCCEEEEEeCcc---cHHH-HHHHHHHHC-CceeEE
Confidence            99999986 55442   2222 233345555 465444

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.62  E-value=1.7e-15  Score=141.23  Aligned_cols=118  Identities=15%  Similarity=0.278  Sum_probs=89.7

Q ss_pred             CcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEEc
Q psy17793         65 SMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL-QLSSIQTHVY  143 (397)
Q Consensus        65 g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~-g~~~v~~~~~  143 (397)
                      ..+|..|.+  ++...++++||++|||+|||+|+.|..+|..+++.++|+++|+++.+++.+++|++++ +..||++...
T Consensus        67 qiiypkD~~--~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~  144 (250)
T d1yb2a1          67 QIISEIDAS--YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS  144 (250)
T ss_dssp             ----------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECS
T ss_pred             cccCHHHHH--HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            334444433  3446799999999999999999999999999888899999999999999999999987 4678999999


Q ss_pred             ccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q psy17793        144 DSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI  223 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~  223 (397)
                      |+.+..            .+..||.|++|.|.                 .           .+.|.+           +.
T Consensus       145 Di~~~~------------~~~~fD~V~ld~p~-----------------p-----------~~~l~~-----------~~  173 (250)
T d1yb2a1         145 DIADFI------------SDQMYDAVIADIPD-----------------P-----------WNHVQK-----------IA  173 (250)
T ss_dssp             CTTTCC------------CSCCEEEEEECCSC-----------------G-----------GGSHHH-----------HH
T ss_pred             eeeccc------------ccceeeeeeecCCc-----------------h-----------HHHHHH-----------HH
Confidence            987652            45689999999881                 1           123555           88


Q ss_pred             ccccCCcEEEEE
Q psy17793        224 PLLKKDGILVYC  235 (397)
Q Consensus       224 ~lLkpgG~lvys  235 (397)
                      +.|||||+|+..
T Consensus       174 ~~LKpGG~lv~~  185 (250)
T d1yb2a1         174 SMMKPGSVATFY  185 (250)
T ss_dssp             HTEEEEEEEEEE
T ss_pred             HhcCCCceEEEE
Confidence            899999998743

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=1.1e-14  Score=137.34  Aligned_cols=143  Identities=15%  Similarity=0.136  Sum_probs=105.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      ..+.+|||+|||+|..++.+|... +..+|+|+|+|+.+++.+++|++++++++|+++.+|....            ...
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~------------~~~  173 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA------------LAG  173 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG------------GTT
T ss_pred             ccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc------------cCC
Confidence            345689999999999999999876 5679999999999999999999999998999999998764            234


Q ss_pred             cCccEEEEcCCCCCCCC---CcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCC
Q psy17793        164 ESFDRILLDAPCSGFGQ---RPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLS  240 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~---~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~  240 (397)
                      .+||+|++|||+-....   .+..........+......+.-. ++++..           +.++|++||.+++.   +.
T Consensus       174 ~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~-~~i~~~-----------a~~~L~~~G~l~lE---ig  238 (274)
T d2b3ta1         174 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADI-VHIIEQ-----------SRNALVSGGFLLLE---HG  238 (274)
T ss_dssp             CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHH-HHHHHH-----------HGGGEEEEEEEEEE---CC
T ss_pred             CceeEEEecchhhhhhhhcccccccccchhhhcccccccchHH-HHHHHH-----------HHHhcCCCCEEEEE---EC
Confidence            68999999999976542   11111111100111222333333 788888           99999999999985   33


Q ss_pred             ccccHHHHHHHHHHC
Q psy17793        241 VEENEAVIAWILHRH  255 (397)
Q Consensus       241 ~eEnE~vV~~~L~~~  255 (397)
                       ..+.+.|..+++++
T Consensus       239 -~~q~~~v~~~l~~~  252 (274)
T d2b3ta1         239 -WQQGEAVRQAFILA  252 (274)
T ss_dssp             -SSCHHHHHHHHHHT
T ss_pred             -chHHHHHHHHHHHC
Confidence             34456777788776

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=3.9e-15  Score=133.51  Aligned_cols=150  Identities=17%  Similarity=0.220  Sum_probs=116.1

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      +..+|.+++|+.|||+|||+|+.|.++++.. +.++|+|+|.|+.+++.++++++.++ .++.++..++..+.      .
T Consensus        15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~-~r~~~~~~~f~~~~------~   86 (192)
T d1m6ya2          15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREAD------F   86 (192)
T ss_dssp             HHHHHCCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHH------H
T ss_pred             HHHhhCCCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhcccc-ccccchhHHHhhHH------H
Confidence            3466789999999999999999999999987 46899999999999999999999887 46899999887652      1


Q ss_pred             HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      ....+..++||.||+|-.||+.-    +         ...-..+. .+.+.|..           +.++|++||+++.. 
T Consensus        87 ~~~~~~~~~vdgIl~DlGvSs~Q----l---------d~~~r~~~-~~~~~L~~-----------a~~~Lk~gG~l~ii-  140 (192)
T d1m6ya2          87 LLKTLGIEKVDGILMDLGVSTYQ----L---------KGENRELE-NLKEFLKK-----------AEDLLNPGGRIVVI-  140 (192)
T ss_dssp             HHHHTTCSCEEEEEEECSCCHHH----H---------HTSHTHHH-HHHHHHHH-----------GGGGEEEEEEEEEE-
T ss_pred             HHHHcCCCCcceeeeccchhHhh----h---------hhhhccch-hHHHHHHH-----------HHHhcCCCCeeeee-
Confidence            11223457899999999987621    1         01111222 23777888           99999999999987 


Q ss_pred             cCCCccccHHHHHHHHHHCCCcEEEe
Q psy17793        237 CSLSVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       237 CS~~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                       |++..|+ ..|..++++++.+.++.
T Consensus       141 -~f~s~Ed-r~vk~~f~~~~~~~~i~  164 (192)
T d1m6ya2         141 -SFHSLED-RIVKETFRNSKKLRILT  164 (192)
T ss_dssp             -ESSHHHH-HHHHHHHHHCSSEEESC
T ss_pred             -ccccHHH-HHHHHHHhhccccccCC
Confidence             4666666 58999999988776654

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.58  E-value=7.7e-15  Score=131.04  Aligned_cols=133  Identities=15%  Similarity=0.205  Sum_probs=103.6

Q ss_pred             chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEEcccccc
Q psy17793         71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS--IQTHVYDSTRI  148 (397)
Q Consensus        71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~--v~~~~~D~~~~  148 (397)
                      |..+.++...+.+.++++|||+|||+|..+.++|..   ...|+++|+|+.+++.+++|++.+++++  +++..+|....
T Consensus        38 d~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~---~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~  114 (194)
T d1dusa_          38 DKGTKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN  114 (194)
T ss_dssp             CHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT
T ss_pred             CHHHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhh---ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh
Confidence            677888888899999999999999999999988874   3589999999999999999999999875  88999998654


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                                  +.+++||+|++|||+..           .    ...       ..+++++           +.++|||
T Consensus       115 ------------~~~~~fD~Ii~~~p~~~-----------~----~~~-------~~~~l~~-----------~~~~Lkp  149 (194)
T d1dusa_         115 ------------VKDRKYNKIITNPPIRA-----------G----KEV-------LHRIIEE-----------GKELLKD  149 (194)
T ss_dssp             ------------CTTSCEEEEEECCCSTT-----------C----HHH-------HHHHHHH-----------HHHHEEE
T ss_pred             ------------hccCCceEEEEcccEEe-----------c----chh-------hhhHHHH-----------HHHhcCc
Confidence                        24578999999999421           1    121       2456777           9999999


Q ss_pred             CcEEEEEecCCCccccHHHHHHHHHH
Q psy17793        229 DGILVYCTCSLSVEENEAVIAWILHR  254 (397)
Q Consensus       229 gG~lvysTCS~~~eEnE~vV~~~L~~  254 (397)
                      ||.++.....   ..+.+.+...+++
T Consensus       150 gG~l~i~~~~---~~~~~~~~~~l~~  172 (194)
T d1dusa_         150 NGEIWVVIQT---KQGAKSLAKYMKD  172 (194)
T ss_dssp             EEEEEEEEES---THHHHHHHHHHHH
T ss_pred             CcEEEEEEeC---cCCHHHHHHHHHH
Confidence            9998775433   2333445555544

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=3.8e-15  Score=139.81  Aligned_cols=136  Identities=18%  Similarity=0.233  Sum_probs=106.1

Q ss_pred             EEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEEcc
Q psy17793         68 ILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ---LSSIQTHVYD  144 (397)
Q Consensus        68 ~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g---~~~v~~~~~D  144 (397)
                      ++..+.+.++...++++||++|||+|||+|..|.++|..+++.|+|+++|+++++++.+++|+++++   ..|+.+...|
T Consensus        79 iiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d  158 (264)
T d1i9ga_          79 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  158 (264)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             ccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc
Confidence            4555566677789999999999999999999999999999999999999999999999999999863   4689999999


Q ss_pred             cccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q psy17793        145 STRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIP  224 (397)
Q Consensus       145 ~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~  224 (397)
                      +....           +.+++||.|++|.|.                 .           .+.+.+           +.+
T Consensus       159 ~~~~~-----------~~~~~fDaV~ldlp~-----------------P-----------~~~l~~-----------~~~  188 (264)
T d1i9ga_         159 LADSE-----------LPDGSVDRAVLDMLA-----------------P-----------WEVLDA-----------VSR  188 (264)
T ss_dssp             GGGCC-----------CCTTCEEEEEEESSC-----------------G-----------GGGHHH-----------HHH
T ss_pred             ccccc-----------ccCCCcceEEEecCC-----------------H-----------HHHHHH-----------HHh
Confidence            87642           456789999999881                 1           123445           888


Q ss_pred             cccCCcEEEEEecCCCccccHHHHHHHHHHC
Q psy17793        225 LLKKDGILVYCTCSLSVEENEAVIAWILHRH  255 (397)
Q Consensus       225 lLkpgG~lvysTCS~~~eEnE~vV~~~L~~~  255 (397)
                      .|||||+++..+.  +-+.-+..++.+-.++
T Consensus       189 ~LkpGG~lv~~~P--~i~Qv~~~~~~l~~~~  217 (264)
T d1i9ga_         189 LLVAGGVLMVYVA--TVTQLSRIVEALRAKQ  217 (264)
T ss_dssp             HEEEEEEEEEEES--SHHHHHHHHHHHHHHS
T ss_pred             ccCCCCEEEEEeC--ccChHHHHHHHHHHcC
Confidence            9999999865432  2334445555544443

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7e-15  Score=141.87  Aligned_cols=120  Identities=18%  Similarity=0.274  Sum_probs=93.7

Q ss_pred             chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-----------CCcEE
Q psy17793         71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-----------LSSIQ  139 (397)
Q Consensus        71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-----------~~~v~  139 (397)
                      .+.+.++...|+++||++|||+|||+|..|.+||..+++.|+|+++|+++++++.+++|+++++           ..|+.
T Consensus        84 pkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~  163 (324)
T d2b25a1          84 PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD  163 (324)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred             cccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccccee
Confidence            3444566678999999999999999999999999999999999999999999999999999864           24799


Q ss_pred             EEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy17793        140 THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD  219 (397)
Q Consensus       140 ~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~  219 (397)
                      +...|+......         +....||.|++|.|-      |                      ...|.+         
T Consensus       164 ~~~~di~~~~~~---------~~~~~fD~V~LD~p~------P----------------------~~~l~~---------  197 (324)
T d2b25a1         164 FIHKDISGATED---------IKSLTFDAVALDMLN------P----------------------HVTLPV---------  197 (324)
T ss_dssp             EEESCTTCCC----------------EEEEEECSSS------T----------------------TTTHHH---------
T ss_pred             EEecchhhcccc---------cCCCCcceEeecCcC------H----------------------HHHHHH---------
Confidence            999998765321         345679999999881      1                      123555         


Q ss_pred             ccccccccCCcEEE-EEecC
Q psy17793        220 WQGIPLLKKDGILV-YCTCS  238 (397)
Q Consensus       220 ~~a~~lLkpgG~lv-ysTCS  238 (397)
                        +.+.|||||+|+ |+.|.
T Consensus       198 --~~~~LKpGG~lv~~~P~i  215 (324)
T d2b25a1         198 --FYPHLKHGGVCAVYVVNI  215 (324)
T ss_dssp             --HGGGEEEEEEEEEEESSH
T ss_pred             --HHHhccCCCEEEEEeCCH
Confidence              889999999886 66554

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.56  E-value=1.4e-14  Score=133.13  Aligned_cols=123  Identities=20%  Similarity=0.281  Sum_probs=94.5

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhh
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      +.++||++|||+|||+|..+.++|..++++|+|+|+|+++.+++.+++++++.  .++..+..|+.....        ..
T Consensus        69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~--~~~~~i~~d~~~~~~--------~~  138 (227)
T d1g8aa_          69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEE--------YR  138 (227)
T ss_dssp             CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGG--------GT
T ss_pred             cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc--CCceEEEEECCCccc--------cc
Confidence            45789999999999999999999999999999999999999999999988765  467788888865421        11


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe--cC
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT--CS  238 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT--CS  238 (397)
                      .....+|.|++|.+|..                         .+..++.+           +.++|||||++++++  ++
T Consensus       139 ~~~~~vD~i~~d~~~~~-------------------------~~~~~l~~-----------~~~~LkpgG~lvi~~ka~~  182 (227)
T d1g8aa_         139 ALVPKVDVIFEDVAQPT-------------------------QAKILIDN-----------AEVYLKRGGYGMIAVKSRS  182 (227)
T ss_dssp             TTCCCEEEEEECCCSTT-------------------------HHHHHHHH-----------HHHHEEEEEEEEEEEEGGG
T ss_pred             ccccceEEEEEEccccc-------------------------hHHHHHHH-----------HHHhcccCCeEEEEEECCc
Confidence            23467999999998532                         11446777           889999999998774  33


Q ss_pred             C-CccccHHHHH
Q psy17793        239 L-SVEENEAVIA  249 (397)
Q Consensus       239 ~-~~eEnE~vV~  249 (397)
                      + ...+.+.+.+
T Consensus       183 ~~~~~~~~~v~~  194 (227)
T d1g8aa_         183 IDVTKEPEQVFR  194 (227)
T ss_dssp             TCTTSCHHHHHH
T ss_pred             cCCCCCHHHHHH
Confidence            3 3344444433

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.55  E-value=5.3e-15  Score=135.30  Aligned_cols=115  Identities=17%  Similarity=0.232  Sum_probs=94.3

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ  153 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~  153 (397)
                      -.++...++++||++|||+|||+|..+..++..   .++|+|+|+|+.+++.++++++..++.++.+.++|+..+.    
T Consensus         5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~---~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~----   77 (234)
T d1xxla_           5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY---VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP----   77 (234)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC----
T ss_pred             HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh---CCeEEEEeCChhhhhhhhhhhccccccccccccccccccc----
Confidence            356778889999999999999999999999885   3689999999999999999999999999999999998763    


Q ss_pred             hhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793        154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV  233 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv  233 (397)
                             +.+++||+|++-    +                  .+..+.+. .++|++           +.++|||||+++
T Consensus        78 -------~~~~~fD~v~~~----~------------------~l~~~~d~-~~~l~~-----------~~r~LkpgG~~~  116 (234)
T d1xxla_          78 -------FPDDSFDIITCR----Y------------------AAHHFSDV-RKAVRE-----------VARVLKQDGRFL  116 (234)
T ss_dssp             -------SCTTCEEEEEEE----S------------------CGGGCSCH-HHHHHH-----------HHHHEEEEEEEE
T ss_pred             -------ccccccceeeee----c------------------eeecccCH-HHHHHH-----------HHHeeCCCcEEE
Confidence                   567899999971    0                  00011111 567788           999999999999


Q ss_pred             EEe
Q psy17793        234 YCT  236 (397)
Q Consensus       234 ysT  236 (397)
                      +++
T Consensus       117 ~~~  119 (234)
T d1xxla_         117 LVD  119 (234)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=1.6e-14  Score=135.31  Aligned_cols=121  Identities=21%  Similarity=0.274  Sum_probs=95.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      .++|++|||+|||+|.+++++|..  +.++|+|+|+|+.+++.+++|++.+|+++ |+++++|++.+.            
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~--~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~------------  170 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP------------  170 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC------------
T ss_pred             cCCccEEEECcceEcHHHHHHHHh--CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc------------
Confidence            468999999999999999999875  45699999999999999999999999976 999999998874            


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE-ec--C
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC-TC--S  238 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys-TC--S  238 (397)
                      ..+.||+|++|+|+++                           ..+|..           |.++||+||.|.|. .|  .
T Consensus       171 ~~~~~D~Ii~~~p~~~---------------------------~~~l~~-----------a~~~l~~gG~lh~~~~~~~~  212 (260)
T d2frna1         171 GENIADRILMGYVVRT---------------------------HEFIPK-----------ALSIAKDGAIIHYHNTVPEK  212 (260)
T ss_dssp             CCSCEEEEEECCCSSG---------------------------GGGHHH-----------HHHHEEEEEEEEEEEEEEGG
T ss_pred             cCCCCCEEEECCCCch---------------------------HHHHHH-----------HHhhcCCCCEEEEEeccccc
Confidence            3467999999999543                           223455           78889999998553 22  2


Q ss_pred             CCccccHHHHHHHHHHC
Q psy17793        239 LSVEENEAVIAWILHRH  255 (397)
Q Consensus       239 ~~~eEnE~vV~~~L~~~  255 (397)
                      ...++..+.+..+.+..
T Consensus       213 ~~~~~~~e~~~~~~~~~  229 (260)
T d2frna1         213 LMPREPFETFKRITKEY  229 (260)
T ss_dssp             GTTTTTHHHHHHHHHHT
T ss_pred             cchhhHHHHHHHHHHHc
Confidence            33344556677777665

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.52  E-value=9.8e-15  Score=132.37  Aligned_cols=113  Identities=16%  Similarity=0.220  Sum_probs=90.4

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ...+.++++++|||+|||+|..+.+++..   ..+|+|+|+|+.+++.+++++++.+..++++.++|+..+.        
T Consensus         8 l~~~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~--------   76 (231)
T d1vl5a_           8 MQIAALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP--------   76 (231)
T ss_dssp             HHHHTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC--------
T ss_pred             HHhcCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhccccccccccccccccccccc--------
Confidence            34577899999999999999999988875   3689999999999999999999999999999999998763        


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                         ++.++||+|++.-                      .+..+.+. .++|++           +.++|||||+++..+-
T Consensus        77 ---~~~~~fD~v~~~~----------------------~l~~~~d~-~~~l~~-----------~~r~LkpgG~l~i~~~  119 (231)
T d1vl5a_          77 ---FTDERFHIVTCRI----------------------AAHHFPNP-ASFVSE-----------AYRVLKKGGQLLLVDN  119 (231)
T ss_dssp             ---SCTTCEEEEEEES----------------------CGGGCSCH-HHHHHH-----------HHHHEEEEEEEEEEEE
T ss_pred             ---ccccccccccccc----------------------cccccCCH-HHHHHH-----------HHHhcCCCcEEEEEeC
Confidence               4568999999711                      11111112 466777           9999999999998753


Q ss_pred             C
Q psy17793        238 S  238 (397)
Q Consensus       238 S  238 (397)
                      +
T Consensus       120 ~  120 (231)
T d1vl5a_         120 S  120 (231)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.51  E-value=4.6e-14  Score=127.93  Aligned_cols=136  Identities=23%  Similarity=0.277  Sum_probs=100.8

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      -+.++||++|||+|||+|..+.++|..++ .++|+|+|+|+.+++.+++++++.+  |+.++..|+......        
T Consensus        51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~~~~~~~--------  119 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPWKY--------  119 (209)
T ss_dssp             CCCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGGGT--------
T ss_pred             cCCCCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccC--CceEEEeeccCcccc--------
Confidence            36689999999999999999999999884 5799999999999999999998864  899999998765311        


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe---
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT---  236 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT---  236 (397)
                      ......+|.|+.|.++.                  .       .+..+|.+           +.++|||||++++++   
T Consensus       120 ~~~~~~vd~v~~~~~~~------------------~-------~~~~~l~~-----------~~~~LkpgG~l~i~~~~~  163 (209)
T d1nt2a_         120 SGIVEKVDLIYQDIAQK------------------N-------QIEILKAN-----------AEFFLKEKGEVVIMVKAR  163 (209)
T ss_dssp             TTTCCCEEEEEECCCST------------------T-------HHHHHHHH-----------HHHHEEEEEEEEEEEEHH
T ss_pred             ccccceEEEEEecccCh------------------h-------hHHHHHHH-----------HHHHhccCCeEEEEEEcc
Confidence            12224678888776521                  1       11456777           889999999998765   


Q ss_pred             cCCCccccHHHHHHHHHHC-CCcEEEe
Q psy17793        237 CSLSVEENEAVIAWILHRH-PEVELVQ  262 (397)
Q Consensus       237 CS~~~eEnE~vV~~~L~~~-~~~~l~~  262 (397)
                      |.-...+.+.+.+...+.. .++++++
T Consensus       164 ~~d~~~~~~~~~~~~~~~l~~gf~i~E  190 (209)
T d1nt2a_         164 SIDSTAEPEEVFKSVLKEMEGDFKIVK  190 (209)
T ss_dssp             HHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            4455566666665554432 2566654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=2.4e-14  Score=130.17  Aligned_cols=88  Identities=13%  Similarity=0.247  Sum_probs=77.9

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d  155 (397)
                      ...+.|++++|++|||+|||+|..|..+|.+++..++|+++|+++.+++.+++++++.+++|+.+..+|+....      
T Consensus        66 ~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~------  139 (213)
T d1dl5a1          66 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV------  139 (213)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC------
T ss_pred             HHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc------
Confidence            34567889999999999999999999999998888999999999999999999999999999999999987653      


Q ss_pred             HHHhhhcccCccEEEEcCC
Q psy17793        156 IERMKLQKESFDRILLDAP  174 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpP  174 (397)
                           ...+.||+|+++..
T Consensus       140 -----~~~~~fD~I~~~~~  153 (213)
T d1dl5a1         140 -----PEFSPYDVIFVTVG  153 (213)
T ss_dssp             -----GGGCCEEEEEECSB
T ss_pred             -----ccccchhhhhhhcc
Confidence                 23467999998654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=4e-14  Score=130.29  Aligned_cols=119  Identities=18%  Similarity=0.146  Sum_probs=94.6

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRI  148 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~  148 (397)
                      ++.....++..+.++||++|||+|||+|..+..+++..  +.+|+|+|+|+.+++.++++++..|+.+ |++..+|+..+
T Consensus        18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~   95 (245)
T d1nkva_          18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   95 (245)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence            44445567788899999999999999999999988853  4699999999999999999999999865 99999999876


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                      .            ..++||.|++-    +      ......  +.           .++|++           +.++|||
T Consensus        96 ~------------~~~~fD~v~~~----~------~~~~~~--d~-----------~~~l~~-----------~~r~LkP  129 (245)
T d1nkva_          96 V------------ANEKCDVAACV----G------ATWIAG--GF-----------AGAEEL-----------LAQSLKP  129 (245)
T ss_dssp             C------------CSSCEEEEEEE----S------CGGGTS--SS-----------HHHHHH-----------HTTSEEE
T ss_pred             c------------ccCceeEEEEE----e------hhhccC--CH-----------HHHHHH-----------HHHHcCc
Confidence            2            45789999961    1      111111  11           456777           9999999


Q ss_pred             CcEEEEEe
Q psy17793        229 DGILVYCT  236 (397)
Q Consensus       229 gG~lvysT  236 (397)
                      ||+++++.
T Consensus       130 GG~l~i~~  137 (245)
T d1nkva_         130 GGIMLIGE  137 (245)
T ss_dssp             EEEEEEEE
T ss_pred             CcEEEEEe
Confidence            99999874

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.46  E-value=2e-13  Score=127.34  Aligned_cols=136  Identities=15%  Similarity=0.129  Sum_probs=100.6

Q ss_pred             chhHHHHHhccC--CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793         71 NLPSILAGHYLD--VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI  148 (397)
Q Consensus        71 d~~S~l~~~~L~--~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~  148 (397)
                      .++..++...|.  .++|++|||+|||+|..+..++.+   +.+|+|+|+|+.+++.+++|++++|++ +++..+|....
T Consensus       104 H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~-~~~~~~d~~~~  179 (254)
T d2nxca1         104 HETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA  179 (254)
T ss_dssp             SHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH
T ss_pred             cchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCc-eeEEecccccc
Confidence            445556555554  578999999999999999876653   368999999999999999999999985 47778876543


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                                  ...++||.|+++-.                   ...+       .+++..           +.++|||
T Consensus       180 ------------~~~~~fD~V~ani~-------------------~~~l-------~~l~~~-----------~~~~Lkp  210 (254)
T d2nxca1         180 ------------LPFGPFDLLVANLY-------------------AELH-------AALAPR-----------YREALVP  210 (254)
T ss_dssp             ------------GGGCCEEEEEEECC-------------------HHHH-------HHHHHH-----------HHHHEEE
T ss_pred             ------------ccccccchhhhccc-------------------cccH-------HHHHHH-----------HHHhcCC
Confidence                        24578999998532                   2222       345556           7789999


Q ss_pred             CcEEEEEecCCCccccHHHHHHHHHHCCCcEEEec
Q psy17793        229 DGILVYCTCSLSVEENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       229 gG~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                      ||+|++|.  +. .+.++.|...++++ +++++..
T Consensus       211 GG~lilSg--il-~~~~~~v~~~~~~~-Gf~~~~~  241 (254)
T d2nxca1         211 GGRALLTG--IL-KDRAPLVREAMAGA-GFRPLEE  241 (254)
T ss_dssp             EEEEEEEE--EE-GGGHHHHHHHHHHT-TCEEEEE
T ss_pred             CcEEEEEe--cc-hhhHHHHHHHHHHC-CCEEEEE
Confidence            99999872  33 34556677777777 5776553

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.45  E-value=2.4e-13  Score=116.93  Aligned_cols=79  Identities=18%  Similarity=0.288  Sum_probs=68.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .|.+|||+|||+|+.++.++.+  +..+|+++|.|+.+++.+++|++++++.+ ++++++|+..+.          ....
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~r--ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l----------~~~~   81 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI----------DCLT   81 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH----------HHBC
T ss_pred             CCCeEEEcCCccCHHHHHHHHh--Ccceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccc----------cccc
Confidence            5889999999999999877764  55699999999999999999999999876 999999998763          1345


Q ss_pred             cCccEEEEcCCC
Q psy17793        164 ESFDRILLDAPC  175 (397)
Q Consensus       164 ~~fD~Il~DpPC  175 (397)
                      ++||+|++|||+
T Consensus        82 ~~fDiIf~DPPy   93 (152)
T d2esra1          82 GRFDLVFLDPPY   93 (152)
T ss_dssp             SCEEEEEECCSS
T ss_pred             cccceeEechhh
Confidence            789999999994

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.43  E-value=1.2e-13  Score=129.80  Aligned_cols=112  Identities=18%  Similarity=0.138  Sum_probs=89.6

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHH
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      ...+.+|.+|||+|||+|+.+..+|+..  +.+|+|+|+|+.+++.++++++..|+. ++++.++|+.++.         
T Consensus        62 ~~~l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~---------  130 (282)
T d2o57a1          62 TGVLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP---------  130 (282)
T ss_dssp             TTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS---------
T ss_pred             hcCCCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhccccccccccccccccccccccc---------
Confidence            3467889999999999999999999864  468999999999999999999999986 6999999998763         


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                        ++.++||+|++--          .....            ... .++|++           +.++|||||++++++..
T Consensus       131 --~~~~sfD~V~~~~----------~l~h~------------~d~-~~~l~~-----------~~~~LkpgG~l~~~~~~  174 (282)
T d2o57a1         131 --CEDNSYDFIWSQD----------AFLHS------------PDK-LKVFQE-----------CARVLKPRGVMAITDPM  174 (282)
T ss_dssp             --SCTTCEEEEEEES----------CGGGC------------SCH-HHHHHH-----------HHHHEEEEEEEEEEEEE
T ss_pred             --ccccccchhhccc----------hhhhc------------cCH-HHHHHH-----------HHHhcCCCcEEEEEEee
Confidence              4668899998611          01111            111 456777           99999999999988654

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5.1e-13  Score=122.16  Aligned_cols=100  Identities=22%  Similarity=0.215  Sum_probs=79.7

Q ss_pred             CCcEEEechhHHHHHhcc--CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-----C
Q psy17793         64 SSMGILQNLPSILAGHYL--DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-----S  136 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L--~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-----~  136 (397)
                      .|..+.+-.-...+.++|  ++++|++|||+|||+|..|..+|.+++..++|+++|+++++++.+++|+++.++     .
T Consensus        53 ~~~~is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~  132 (224)
T d1i1na_          53 FQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSG  132 (224)
T ss_dssp             TTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTS
T ss_pred             chhhhhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccccccc
Confidence            344444433333444555  678999999999999999999999998889999999999999999999998765     4


Q ss_pred             cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCC
Q psy17793        137 SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       137 ~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                      ++.+..+|+....           .....||+|+++..
T Consensus       133 ~~~~~~gD~~~~~-----------~~~~~fD~I~~~~~  159 (224)
T d1i1na_         133 RVQLVVGDGRMGY-----------AEEAPYDAIHVGAA  159 (224)
T ss_dssp             SEEEEESCGGGCC-----------GGGCCEEEEEECSB
T ss_pred             ceEEEEeeccccc-----------chhhhhhhhhhhcc
Confidence            6889999987653           23468999999654

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=7.6e-13  Score=117.25  Aligned_cols=80  Identities=10%  Similarity=0.122  Sum_probs=70.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      .+.+|||+|||+|..++.++++  +..+|+++|.|+.+++.+++|++.++..+++++..|+..+...          ...
T Consensus        43 ~~~~vLDlfaGsG~~giealsr--Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~----------~~~  110 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ----------KGT  110 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS----------CCC
T ss_pred             chhhhhhhhccccceeeeEEec--CcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccc----------ccc
Confidence            5779999999999999988774  5679999999999999999999999999999999998876422          346


Q ss_pred             CccEEEEcCCCC
Q psy17793        165 SFDRILLDAPCS  176 (397)
Q Consensus       165 ~fD~Il~DpPCS  176 (397)
                      .||+|++|||+.
T Consensus       111 ~fDlIf~DPPY~  122 (183)
T d2fpoa1         111 PHNIVFVDPPFR  122 (183)
T ss_dssp             CEEEEEECCSSS
T ss_pred             ccCEEEEcCccc
Confidence            899999999963

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.37  E-value=2.4e-12  Score=116.04  Aligned_cols=116  Identities=12%  Similarity=0.195  Sum_probs=90.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      ++..|||+|||+|..+.++|.. .+...++|+|+++.++..+.+++++.|++||.++.+|+..+..         .+..+
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~-~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~---------~~~~~   98 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQ-NPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTD---------VFEPG   98 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHH-CTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHH---------HCCTT
T ss_pred             CCceEEEEEecCcHHHHHHHHh-CCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhc---------ccCch
Confidence            3558999999999999999998 4678999999999999999999999999999999999987631         25678


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      ++|.|++.=|.      |.......    ..++     ++..+|+.           +.++|||||.|.+.|
T Consensus        99 ~~d~v~i~fp~------P~~k~~h~----k~Rl-----~~~~~l~~-----------~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1          99 EVKRVYLNFSD------PWPKKRHE----KRRL-----TYSHFLKK-----------YEEVMGKGGSIHFKT  144 (204)
T ss_dssp             SCCEEEEESCC------CCCSGGGG----GGST-----TSHHHHHH-----------HHHHHTTSCEEEEEE
T ss_pred             hhhcccccccc------ccchhhhc----chhh-----hHHHHHHH-----------HHHhCCCCcEEEEEE
Confidence            89998876552      22221111    0111     23567777           889999999999986

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.36  E-value=8.5e-13  Score=118.25  Aligned_cols=106  Identities=16%  Similarity=0.196  Sum_probs=82.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      +++++|||+|||+|..+.++|..   +.+|+|+|+|+.+++.+++++...+. ++..+..|+.++.           +..
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~-----------~~~  100 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLS-----------FED  100 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCC-----------SCT
T ss_pred             CCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc-ccccccccccccc-----------ccC
Confidence            56789999999999999999984   46899999999999999999998875 4678888988763           456


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      ++||+|++--          ......    ..+       ..++|++           +.++|||||++++.+
T Consensus       101 ~~fD~I~~~~----------~l~~~~----~~d-------~~~~l~~-----------i~~~LkpgG~lii~~  141 (226)
T d1ve3a1         101 KTFDYVIFID----------SIVHFE----PLE-------LNQVFKE-----------VRRVLKPSGKFIMYF  141 (226)
T ss_dssp             TCEEEEEEES----------CGGGCC----HHH-------HHHHHHH-----------HHHHEEEEEEEEEEE
T ss_pred             cCceEEEEec----------chhhCC----hhH-------HHHHHHH-----------HHHHcCcCcEEEEEE
Confidence            7899999710          011111    111       1567888           999999999998764

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.35  E-value=1.1e-12  Score=114.85  Aligned_cols=82  Identities=18%  Similarity=0.182  Sum_probs=63.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ...|.+|||+|||+|..++.++..   +++|+++|.|+.+++.+++|++++|+.+ ++...|+..+..       .....
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~d~~~~-------~~~~~  107 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLP-------EAKAQ  107 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHH-------HHHHT
T ss_pred             ccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhcccc-ceeeeehhcccc-------ccccc
Confidence            356889999999999999876663   4689999999999999999999999865 455555443210       01234


Q ss_pred             ccCccEEEEcCCC
Q psy17793        163 KESFDRILLDAPC  175 (397)
Q Consensus       163 ~~~fD~Il~DpPC  175 (397)
                      .++||+|++|||+
T Consensus       108 ~~~fD~If~DPPY  120 (171)
T d1ws6a1         108 GERFTVAFMAPPY  120 (171)
T ss_dssp             TCCEEEEEECCCT
T ss_pred             CCccceeEEcccc
Confidence            4689999999996

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=4.9e-12  Score=122.61  Aligned_cols=91  Identities=25%  Similarity=0.341  Sum_probs=76.6

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhH
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      +..++++.++++|||++||.|.+|+.||.   ...+|+|+|.++.+++.+++|++.+|++|++++.+|.......     
T Consensus       204 v~~~~~~~~~~~vlDLycG~G~fsl~La~---~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~-----  275 (358)
T d1uwva2         204 ALEWLDVQPEDRVLDLFCGMGNFTLPLAT---QAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK-----  275 (358)
T ss_dssp             HHHHHTCCTTCEEEEESCTTTTTHHHHHT---TSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS-----
T ss_pred             HHHhhccCCCceEEEecccccccchhccc---cccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhh-----
Confidence            44566788899999999999999999987   3579999999999999999999999999999999998765422     


Q ss_pred             HHhhhcccCccEEEEcCCCCC
Q psy17793        157 ERMKLQKESFDRILLDAPCSG  177 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg  177 (397)
                        .......+|+|++|||-+|
T Consensus       276 --~~~~~~~~d~vilDPPR~G  294 (358)
T d1uwva2         276 --QPWAKNGFDKVLLDPARAG  294 (358)
T ss_dssp             --SGGGTTCCSEEEECCCTTC
T ss_pred             --hhhhhccCceEEeCCCCcc
Confidence              1123457999999999666

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.33  E-value=1.4e-12  Score=119.71  Aligned_cols=133  Identities=17%  Similarity=0.177  Sum_probs=90.9

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhh
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      +.++||++|||+|||+|..+.++|... +.+.|+|+|+|+.+++.+++++++.  .|+..+..|+.....          
T Consensus        70 l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~----------  136 (230)
T d1g8sa_          70 MPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQE----------  136 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGG----------
T ss_pred             CCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCcc----------
Confidence            447899999999999999999999974 5689999999999999999987665  477888888876531          


Q ss_pred             hcccCcc--EEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        161 LQKESFD--RILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       161 ~~~~~fD--~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      +....+|  .|+.|-.+                  ...       ...++.+           +.++|||||+++.+.-.
T Consensus       137 ~~~~~~~v~~i~~~~~~------------------~~~-------~~~~l~~-----------~~r~LKpgG~~~i~~k~  180 (230)
T d1g8sa_         137 YANIVEKVDVIYEDVAQ------------------PNQ-------AEILIKN-----------AKWFLKKGGYGMIAIKA  180 (230)
T ss_dssp             GTTTCCCEEEEEECCCS------------------TTH-------HHHHHHH-----------HHHHEEEEEEEEEEEEG
T ss_pred             cccccceeEEeeccccc------------------hHH-------HHHHHHH-----------HHHhcccCceEEEEeec
Confidence            2233444  44443321                  011       1445677           88999999999887321


Q ss_pred             ------CCccccHHHHHHHHHHCCCcEEEec
Q psy17793        239 ------LSVEENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       239 ------~~~eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                            ..+++-.+.+...|++. +|++++.
T Consensus       181 ~~~d~~~~~~~~~~e~~~~L~~a-GF~ive~  210 (230)
T d1g8sa_         181 RSIDVTKDPKEIFKEQKEILEAG-GFKIVDE  210 (230)
T ss_dssp             GGTCSSSCHHHHHHHHHHHHHHH-TEEEEEE
T ss_pred             cccCCCCCHHHHHHHHHHHHHHc-CCEEEEE
Confidence                  12222222334455555 5776653

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.33  E-value=6.4e-12  Score=111.65  Aligned_cols=108  Identities=20%  Similarity=0.203  Sum_probs=86.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      +.+| +|||+|||+|..+..+++.   +.+|+|+|+|+.+++.++++++..|++++++...|+..+.            .
T Consensus        29 ~~~g-rvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~------------~   92 (198)
T d2i6ga1          29 VAPG-RTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT------------F   92 (198)
T ss_dssp             SCSC-EEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC------------C
T ss_pred             CCCC-cEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccc------------c
Confidence            3444 8999999999999999984   4689999999999999999999999999999999998763            3


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      .+.||.|++...          .....    ...       ..++|++           +.++|+|||++++.+..
T Consensus        93 ~~~fD~I~~~~~----------~~~~~----~~~-------~~~~l~~-----------~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1          93 DGEYDFILSTVV----------MMFLE----AQT-------IPGLIAN-----------MQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             CCCEEEEEEESC----------GGGSC----TTH-------HHHHHHH-----------HHHTEEEEEEEEEEEEB
T ss_pred             cccccEEEEeee----------eecCC----HHH-------HHHHHHH-----------HHHHcCCCcEEEEEEec
Confidence            468999998442          11111    111       1567777           99999999999998654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.3e-12  Score=118.40  Aligned_cols=137  Identities=13%  Similarity=0.096  Sum_probs=99.2

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ...++.+|||+|||+|..+.+++..  ...+|+|+|+|+.+++.++++++..+..++++.++|+.++.           +
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~-----------~  123 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLP--LFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-----------P  123 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTT--TCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-----------C
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHh--cCCEEEEeecCHHHhhccccccccccccccccccccccccc-----------c
Confidence            3566789999999999999887653  34589999999999999999999988888999999998863           3


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV  241 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~  241 (397)
                      ..++||+|++.-          ......    ...       ..++|.+           +.++|||||.+++++-....
T Consensus       124 ~~~~fD~I~~~~----------~l~h~~----~~~-------~~~~l~~-----------i~~~Lk~~G~~~i~~~~~~~  171 (222)
T d2ex4a1         124 EPDSYDVIWIQW----------VIGHLT----DQH-------LAEFLRR-----------CKGSLRPNGIIVIKDNMAQE  171 (222)
T ss_dssp             CSSCEEEEEEES----------CGGGSC----HHH-------HHHHHHH-----------HHHHEEEEEEEEEEEEEBSS
T ss_pred             cccccccccccc----------ccccch----hhh-------hhhHHHH-----------HHHhcCCcceEEEEEccccc
Confidence            567899999721          111111    111       1567888           99999999999887321111


Q ss_pred             c-----------ccHHHHHHHHHHCCCcEEEecC
Q psy17793        242 E-----------ENEAVIAWILHRHPEVELVQTL  264 (397)
Q Consensus       242 e-----------EnE~vV~~~L~~~~~~~l~~~~  264 (397)
                      .           -+.+.+..++++. +++++...
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~a-Gf~ii~~~  204 (222)
T d2ex4a1         172 GVILDDVDSSVCRDLDVVRRIICSA-GLSLLAEE  204 (222)
T ss_dssp             SEEEETTTTEEEEBHHHHHHHHHHT-TCCEEEEE
T ss_pred             ccccccCCceeeCCHHHHHHHHHHc-CCEEEEEE
Confidence            0           0355677777777 57766543

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.31  E-value=2.2e-12  Score=114.24  Aligned_cols=83  Identities=20%  Similarity=0.278  Sum_probs=69.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .+|.+|||+|||+|+.++.++.+  +...|+++|.|+.+++.+++|++.++.. ++++++.|+..+...       ....
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~sr--Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~-------~~~~  110 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQ-------FYEE  110 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH-------HHHT
T ss_pred             cCCCEEEEcccccccccceeeec--chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhh-------hccc
Confidence            46899999999999999988884  5678999999999999999999999986 599999999876421       1113


Q ss_pred             ccCccEEEEcCCC
Q psy17793        163 KESFDRILLDAPC  175 (397)
Q Consensus       163 ~~~fD~Il~DpPC  175 (397)
                      ..+||+|++|||+
T Consensus       111 ~~~fDlIflDPPY  123 (182)
T d2fhpa1         111 KLQFDLVLLDPPY  123 (182)
T ss_dssp             TCCEEEEEECCCG
T ss_pred             CCCcceEEechhh
Confidence            4579999999994

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.30  E-value=1.1e-11  Score=111.58  Aligned_cols=117  Identities=14%  Similarity=0.206  Sum_probs=91.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      ....|||+|||.|..+.++|... +...++|+|+++.++..+.+++++.+++||.+..+|+..+...         +...
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~---------~~~~  100 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY---------FEDG  100 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT---------SCTT
T ss_pred             CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhh---------ccCC
Confidence            34589999999999999999985 5678999999999999999999999999999999999876422         5667


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEec
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC  237 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC  237 (397)
                      ++|.|++.-|      .|....+..    ..++     .|..+|+.           ..++|||||.|.++|-
T Consensus       101 ~~~~i~i~fP------dPw~K~~h~----krRl-----~~~~~l~~-----------~~~~LkpgG~l~i~TD  147 (204)
T d1yzha1         101 EIDRLYLNFS------DPWPKKRHE----KRRL-----TYKTFLDT-----------FKRILPENGEIHFKTD  147 (204)
T ss_dssp             CCSEEEEESC------CCCCSGGGG----GGST-----TSHHHHHH-----------HHHHSCTTCEEEEEES
T ss_pred             ceehhccccc------ccccchhhh----hhhh-----hHHHHHHH-----------HHHhCCCCcEEEEEEC
Confidence            8999988655      233222111    1111     34667777           8899999999998863

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.30  E-value=1.7e-12  Score=117.97  Aligned_cols=99  Identities=11%  Similarity=0.203  Sum_probs=83.4

Q ss_pred             CCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEE
Q psy17793         63 DSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHV  142 (397)
Q Consensus        63 ~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~  142 (397)
                      ..|..+.+-.......+.|++++|++|||+|||+|..|+.+|.+.+  ++|+++|.++..++.++++++++|+.|+.+.+
T Consensus        56 ~~g~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~  133 (215)
T d1jg1a_          56 PAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVIL  133 (215)
T ss_dssp             STTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             chhhhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCCceeEEEE
Confidence            4566666655445567789999999999999999999999998863  67999999999999999999999999999999


Q ss_pred             cccccccccchhhHHHhhhcccCccEEEEcCC
Q psy17793        143 YDSTRINTSSQIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       143 ~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                      +|+....           .....||+|++.+.
T Consensus       134 gd~~~g~-----------~~~~pfD~Iiv~~a  154 (215)
T d1jg1a_         134 GDGSKGF-----------PPKAPYDVIIVTAG  154 (215)
T ss_dssp             SCGGGCC-----------GGGCCEEEEEECSB
T ss_pred             CccccCC-----------cccCcceeEEeecc
Confidence            9997643           23468999998654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.28  E-value=4.1e-12  Score=116.13  Aligned_cols=110  Identities=18%  Similarity=0.163  Sum_probs=84.9

Q ss_pred             CCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793         82 DVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ...++.+|||+|||+|..+..+++.   +..|+|+|.|+.+++.+++++++.+. ++.+.++|+.++.           +
T Consensus        38 ~~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~-----------~  102 (251)
T d1wzna1          38 AKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIA-----------F  102 (251)
T ss_dssp             CSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCC-----------C
T ss_pred             cCCCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc-cchheehhhhhcc-----------c
Confidence            4456779999999999999999884   45899999999999999999999887 5899999998873           2


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                       .++||.|++    ++..     ....+   .       .+. .+.|++           +.++|||||+++.....
T Consensus       103 -~~~fD~I~~----~~~~-----~~~~~---~-------~~~-~~~L~~-----------~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         103 -KNEFDAVTM----FFST-----IMYFD---E-------EDL-RKLFSK-----------VAEALKPGGVFITDFPC  147 (251)
T ss_dssp             -CSCEEEEEE----CSSG-----GGGSC---H-------HHH-HHHHHH-----------HHHHEEEEEEEEEEEEC
T ss_pred             -ccccchHhh----hhhh-----hhcCC---h-------HHH-HHHHHH-----------HHHHcCCCcEEEEEecc
Confidence             358999996    1100     00111   1       112 567888           99999999999997654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=7.3e-12  Score=118.73  Aligned_cols=131  Identities=18%  Similarity=0.210  Sum_probs=95.7

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRI  148 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~  148 (397)
                      |...-..+...+++++|++|||+|||.|+.+.++|+..  +.+|+++++|+..++.++++++..|+.+ +.+...|... 
T Consensus        46 q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~-  122 (291)
T d1kpia_          46 QYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE-  122 (291)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG-
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc-
Confidence            44444567778899999999999999999999999875  4699999999999999999999999875 7777777542 


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                                   .+++||+|++-      +    +..+..-.......+.+    +.++++           +.++|||
T Consensus       123 -------------~~~~fD~i~si------e----~~eH~~~~~~~~~~~~~----~~~f~~-----------i~~~Lkp  164 (291)
T d1kpia_         123 -------------FDEPVDRIVSL------G----AFEHFADGAGDAGFERY----DTFFKK-----------FYNLTPD  164 (291)
T ss_dssp             -------------CCCCCSEEEEE------S----CGGGTTCCSSCCSTTHH----HHHHHH-----------HHHTSCT
T ss_pred             -------------cccccceEeec------h----hHHhcchhhhhhHHHHH----HHHHHH-----------HHHhCCC
Confidence                         34789999961      1    11111000000001122    567777           9999999


Q ss_pred             CcEEEEEecCCCc
Q psy17793        229 DGILVYCTCSLSV  241 (397)
Q Consensus       229 gG~lvysTCS~~~  241 (397)
                      ||+++..|.++..
T Consensus       165 gG~~~l~~i~~~~  177 (291)
T d1kpia_         165 DGRMLLHTITIPD  177 (291)
T ss_dssp             TCEEEEEEEECCC
T ss_pred             CCceEEEEEeccC
Confidence            9999998877543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.27  E-value=1e-11  Score=111.44  Aligned_cols=83  Identities=19%  Similarity=0.265  Sum_probs=68.7

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      +...+...|.+|||+|||+|+.+..++..  +..+|+|+|+|+.+++.+++|++.++. +.++...|+..+         
T Consensus        39 ~~~~~dl~g~~vLDlg~GtG~l~i~a~~~--g~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~---------  106 (201)
T d1wy7a1          39 AYSLGDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF---------  106 (201)
T ss_dssp             HHHTTSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC---------
T ss_pred             HHhcCCCCCCEEEECcCcchHHHHHHHHc--CCCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhh---------
Confidence            34444557899999999999999876653  556999999999999999999999987 468888888654         


Q ss_pred             HhhhcccCccEEEEcCCCCC
Q psy17793        158 RMKLQKESFDRILLDAPCSG  177 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg  177 (397)
                           .++||+|++||||..
T Consensus       107 -----~~~fD~Vi~nPP~~~  121 (201)
T d1wy7a1         107 -----NSRVDIVIMNPPFGS  121 (201)
T ss_dssp             -----CCCCSEEEECCCCSS
T ss_pred             -----CCcCcEEEEcCcccc
Confidence                 357999999999854

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.27  E-value=4.1e-12  Score=116.44  Aligned_cols=106  Identities=19%  Similarity=0.212  Sum_probs=81.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      ++.+|||+|||+|..+..++..   +.+|+|+|.|+.+++.+++++...|. +++++++|+..+.            ..+
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~------------~~~  100 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLN------------INR  100 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCC------------CSC
T ss_pred             CCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCc-cceeeccchhhhc------------ccc
Confidence            4578999999999999999885   35899999999999999999998887 6899999998763            246


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      +||.|++  .++.      +..-.+    .++.       .++|++           +.++|||||.+++..
T Consensus       101 ~fD~i~~--~~~~------~~~~~~----~~~~-------~~~l~~-----------~~~~LkpgG~~i~~~  142 (246)
T d1y8ca_         101 KFDLITC--CLDS------TNYIID----SDDL-------KKYFKA-----------VSNHLKEGGVFIFDI  142 (246)
T ss_dssp             CEEEEEE--CTTG------GGGCCS----HHHH-------HHHHHH-----------HHTTEEEEEEEEEEE
T ss_pred             cccccce--eeee------eeccCC----HHHH-------HHHHHH-----------HHHhCCCCeEEEEEe
Confidence            8999996  0000      000001    1221       567788           999999999999864

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=1.9e-11  Score=115.22  Aligned_cols=119  Identities=18%  Similarity=0.253  Sum_probs=90.2

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRI  148 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~  148 (397)
                      |...-..+...|++++|++|||+|||.|+.+.++++..  +.+|+++|+|+..++.+++++++.|+.. +.+...|...+
T Consensus        37 Q~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~  114 (280)
T d2fk8a1          37 QYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF  114 (280)
T ss_dssp             HHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh
Confidence            33334456677889999999999999999999988865  3689999999999999999999999864 77777776543


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                                    +++||.|++          -++..+..    .+   .+    ..++++           +.++|||
T Consensus       115 --------------~~~fD~i~s----------i~~~eh~~----~~---~~----~~~f~~-----------i~~~Lkp  148 (280)
T d2fk8a1         115 --------------AEPVDRIVS----------IEAFEHFG----HE---NY----DDFFKR-----------CFNIMPA  148 (280)
T ss_dssp             --------------CCCCSEEEE----------ESCGGGTC----GG---GH----HHHHHH-----------HHHHSCT
T ss_pred             --------------ccchhhhhH----------hhHHHHhh----hh---hH----HHHHHH-----------HHhccCC
Confidence                          368999986          01111111    11   11    456777           8999999


Q ss_pred             CcEEEEEe
Q psy17793        229 DGILVYCT  236 (397)
Q Consensus       229 gG~lvysT  236 (397)
                      ||+++..+
T Consensus       149 gG~~~i~~  156 (280)
T d2fk8a1         149 DGRMTVQS  156 (280)
T ss_dssp             TCEEEEEE
T ss_pred             CceEEEEE
Confidence            99999875

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.25  E-value=1e-11  Score=114.54  Aligned_cols=112  Identities=13%  Similarity=0.122  Sum_probs=83.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ..+|.+|||+|||+|+.+..++..  +.+.|+|+|+|+.+++.++++++..+.. ++.+.++|+.....          .
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~----------~   89 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM----------D   89 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC----------C
T ss_pred             CCCcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcc----------c
Confidence            457899999999999999888875  4568999999999999999999888765 69999999865421          1


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      ..++||+|++.-           ...+.    ...    .+....+|.+           +.++|||||+++.++
T Consensus        90 ~~~~fD~V~~~~-----------~l~~~----~~~----~~~~~~~l~~-----------i~~~Lk~gG~~i~~~  134 (252)
T d1ri5a_          90 LGKEFDVISSQF-----------SFHYA----FST----SESLDIAQRN-----------IARHLRPGGYFIMTV  134 (252)
T ss_dssp             CSSCEEEEEEES-----------CGGGG----GSS----HHHHHHHHHH-----------HHHTEEEEEEEEEEE
T ss_pred             ccccceEEEEcc-----------eeeec----CCC----HHHHHHHHHH-----------HhceeCCCCEEEEEe
Confidence            346899998711           00000    000    1112567788           999999999998864

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.25  E-value=3.6e-12  Score=119.87  Aligned_cols=117  Identities=17%  Similarity=0.191  Sum_probs=91.0

Q ss_pred             hHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc
Q psy17793         73 PSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS  152 (397)
Q Consensus        73 ~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~  152 (397)
                      .+.++..+..+..+.+|||+|||+|..+..++...+.+++|+|+|+|+.+++.++++++..+. ++++...|+..+.   
T Consensus        15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~---   90 (281)
T d2gh1a1          15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIE---   90 (281)
T ss_dssp             HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCC---
T ss_pred             HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-ccccccccccccc---
Confidence            344555555677788999999999999999998876678999999999999999999998886 6899999988752   


Q ss_pred             hhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE
Q psy17793        153 QIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL  232 (397)
Q Consensus       153 ~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l  232 (397)
                              + .++||+|++.--          ....            .+. .++|++           +.+.|||||.+
T Consensus        91 --------~-~~~fD~v~~~~~----------l~~~------------~d~-~~~l~~-----------~~~~LkpgG~l  127 (281)
T d2gh1a1          91 --------L-NDKYDIAICHAF----------LLHM------------TTP-ETMLQK-----------MIHSVKKGGKI  127 (281)
T ss_dssp             --------C-SSCEEEEEEESC----------GGGC------------SSH-HHHHHH-----------HHHTEEEEEEE
T ss_pred             --------c-cCCceEEEEehh----------hhcC------------CCH-HHHHHH-----------HHHHcCcCcEE
Confidence                    2 357999997321          1111            111 456777           99999999999


Q ss_pred             EEEe
Q psy17793        233 VYCT  236 (397)
Q Consensus       233 vysT  236 (397)
                      +..+
T Consensus       128 ii~~  131 (281)
T d2gh1a1         128 ICFE  131 (281)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8765

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.25  E-value=2.4e-11  Score=109.88  Aligned_cols=120  Identities=18%  Similarity=0.216  Sum_probs=87.4

Q ss_pred             hHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccc
Q psy17793         73 PSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMN-DTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINT  150 (397)
Q Consensus        73 ~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~  150 (397)
                      .+.++...  .+++.+|||+|||+|..+..++.... +..+|+|+|+|+.+++.++++++..+.. ++.+...|....  
T Consensus        29 i~~~~~~~--~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~--  104 (225)
T d1im8a_          29 IGMLAERF--VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV--  104 (225)
T ss_dssp             HHHHHHHH--CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC--
T ss_pred             HHHHHHHh--cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc--
Confidence            33444444  36788999999999999999998653 5679999999999999999999987754 477888887654  


Q ss_pred             cchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc
Q psy17793        151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG  230 (397)
Q Consensus       151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG  230 (397)
                                 ....+|.|++.   +.       ....+   . ++.       .++|++           +.+.|||||
T Consensus       105 -----------~~~~~d~i~~~---~~-------l~~~~---~-~d~-------~~~l~~-----------i~~~LkpgG  141 (225)
T d1im8a_         105 -----------EIKNASMVILN---FT-------LQFLP---P-EDR-------IALLTK-----------IYEGLNPNG  141 (225)
T ss_dssp             -----------CCCSEEEEEEE---SC-------GGGSC---G-GGH-------HHHHHH-----------HHHHEEEEE
T ss_pred             -----------ccccceeeEEe---ee-------ccccC---h-hhH-------HHHHHH-----------HHHhCCCCc
Confidence                       33578988861   11       00111   1 111       467888           999999999


Q ss_pred             EEEEEecCC
Q psy17793        231 ILVYCTCSL  239 (397)
Q Consensus       231 ~lvysTCS~  239 (397)
                      .+++++-+.
T Consensus       142 ~li~~~~~~  150 (225)
T d1im8a_         142 VLVLSEKFR  150 (225)
T ss_dssp             EEEEEEECC
T ss_pred             eeecccccc
Confidence            999986553

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=1.1e-11  Score=117.28  Aligned_cols=121  Identities=20%  Similarity=0.242  Sum_probs=93.9

Q ss_pred             echhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccc
Q psy17793         70 QNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRI  148 (397)
Q Consensus        70 Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~  148 (397)
                      |+.-...++..|++++|++|||+|||.|+.+.++|+..  +.+|+++++|+..++.+++++++.|+. ++++...|...+
T Consensus        47 Q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~  124 (285)
T d1kpga_          47 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF  124 (285)
T ss_dssp             HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc
Confidence            44445567788899999999999999999999999975  479999999999999999999999875 489999988654


Q ss_pred             cccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q psy17793        149 NTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKK  228 (397)
Q Consensus       149 ~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkp  228 (397)
                                    +++||.|++      .    ++..+..    .   +.+    ..++++           +.++|||
T Consensus       125 --------------~~~fD~i~s------i----~~~eh~~----~---~~~----~~~~~~-----------~~r~Lkp  158 (285)
T d1kpga_         125 --------------DEPVDRIVS------I----GAFEHFG----H---ERY----DAFFSL-----------AHRLLPA  158 (285)
T ss_dssp             --------------CCCCSEEEE------E----SCGGGTC----T---TTH----HHHHHH-----------HHHHSCT
T ss_pred             --------------cccccceee------e----hhhhhcC----c---hhH----HHHHHH-----------HHhhcCC
Confidence                          357999986      0    1111111    0   111    456777           9999999


Q ss_pred             CcEEEEEecC
Q psy17793        229 DGILVYCTCS  238 (397)
Q Consensus       229 gG~lvysTCS  238 (397)
                      ||+++..|.+
T Consensus       159 gG~~~l~~i~  168 (285)
T d1kpga_         159 DGVMLLHTIT  168 (285)
T ss_dssp             TCEEEEEEEE
T ss_pred             CCcEEEEEEe
Confidence            9999987654

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.22  E-value=2.3e-11  Score=107.43  Aligned_cols=82  Identities=20%  Similarity=0.211  Sum_probs=67.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEEcccccccccchhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS--IQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~--v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .|.+|||+|||+|..++.++++  +...|+.||.|+..++.+++|++++++.+  ..+...|+..+...        ...
T Consensus        43 ~~~~vLDlFaGsG~~glEalSR--GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~--------~~~  112 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ--------PQN  112 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS--------CCS
T ss_pred             ccceEeecccCccceeeeeeee--cceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccc--------ccc
Confidence            5789999999999999998885  67799999999999999999999999854  67777776654321        112


Q ss_pred             ccCccEEEEcCCCC
Q psy17793        163 KESFDRILLDAPCS  176 (397)
Q Consensus       163 ~~~fD~Il~DpPCS  176 (397)
                      ..+||+|++|||+.
T Consensus       113 ~~~fDlIFlDPPY~  126 (183)
T d2ifta1         113 QPHFDVVFLDPPFH  126 (183)
T ss_dssp             SCCEEEEEECCCSS
T ss_pred             CCcccEEEechhHh
Confidence            35799999999963

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.22  E-value=1.4e-11  Score=112.46  Aligned_cols=95  Identities=18%  Similarity=0.213  Sum_probs=74.5

Q ss_pred             CCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc
Q psy17793         64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY  143 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~  143 (397)
                      .|....+-.....+...|++++|++|||+|||+|..|..+|.+.   ++|+++|+++..++.+++++.+  ..|+.++.+
T Consensus        49 ~g~~~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~--~~nv~~~~~  123 (224)
T d1vbfa_          49 PGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY--YNNIKLILG  123 (224)
T ss_dssp             TTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT--CSSEEEEES
T ss_pred             CCCceehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhc--ccccccccC
Confidence            34444443333445678899999999999999999999998873   6899999999999999998765  468999999


Q ss_pred             ccccccccchhhHHHhhhcccCccEEEEcCC
Q psy17793        144 DSTRINTSSQIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                      |+....           ...++||+|++++.
T Consensus       124 d~~~g~-----------~~~~pfD~Iiv~~a  143 (224)
T d1vbfa_         124 DGTLGY-----------EEEKPYDRVVVWAT  143 (224)
T ss_dssp             CGGGCC-----------GGGCCEEEEEESSB
T ss_pred             chhhcc-----------hhhhhHHHHHhhcc
Confidence            986542           13467999998654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5e-12  Score=115.32  Aligned_cols=112  Identities=15%  Similarity=0.127  Sum_probs=83.9

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .+|.+|||+|||+|..+..+|..  ...+|+++|+|+.+++.++++.++.+. ++..+..|+....         ..+..
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~--~~~~v~~id~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~  119 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVA---------PTLPD  119 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHG---------GGSCT
T ss_pred             cCCCeEEEeeccchHHHHHHHHc--CCCeEEEeCCCHHHHHHHHHHhhhccc-ccccccccccccc---------ccccc
Confidence            56889999999999999998874  346899999999999999999887653 4777777776543         22456


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      ++||.|+.|+.-+...                 ...+. .....+++           +.++|||||+|+|.+
T Consensus       120 ~~fD~i~fD~~~~~~~-----------------~~~~~-~~~~~~~~-----------~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         120 GHFDGILYDTYPLSEE-----------------TWHTH-QFNFIKNH-----------AFRLLKPGGVLTYCN  163 (229)
T ss_dssp             TCEEEEEECCCCCBGG-----------------GTTTH-HHHHHHHT-----------HHHHEEEEEEEEECC
T ss_pred             ccccceeecccccccc-----------------ccccc-CHHHHHHH-----------HHHHcCCCcEEEEEe
Confidence            7899999998632211                 11111 12556777           899999999999854

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=99.19  E-value=7.2e-11  Score=105.71  Aligned_cols=153  Identities=18%  Similarity=0.181  Sum_probs=101.5

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ  153 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~  153 (397)
                      +.+++.++.+++|++|||.|||+|++...+.+.+.....++++|+++..+..+         ....++++|.....    
T Consensus         8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~~~----   74 (223)
T d2ih2a1           8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWE----   74 (223)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCC----
T ss_pred             HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhccc----
Confidence            45677788889999999999999999998888877778999999998764322         23466778876552    


Q ss_pred             hhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHH-------HHHHHHHHHHHHHHhhhhccccccccccc
Q psy17793        154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKI-------KSYANIQKKLLQAVYRFVSLFDWQGIPLL  226 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~-------~~l~~~Q~~lL~~~~~f~~~~~~~a~~lL  226 (397)
                              ....||.|+.|||+............... ......       .....++..++.+           ++++|
T Consensus        75 --------~~~~fd~ii~npP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Fi~~-----------al~~l  134 (223)
T d2ih2a1          75 --------PGEAFDLILGNPPYGIVGEASKYPIHVFK-AVKDLYKKAFSTWKGKYNLYGAFLEK-----------AVRLL  134 (223)
T ss_dssp             --------CSSCEEEEEECCCCCCBSCTTTCSBCCCH-HHHHHHHHHCTTCCTTCCHHHHHHHH-----------HHHHE
T ss_pred             --------cccccceecccCccccccccccccchhhh-hhhhhhhhccccCCCcchHHHHHHHH-----------HHHhc
Confidence                    34689999999998765532111111110 000000       0111244567777           99999


Q ss_pred             cCCcEEEEEe-cCCCccccHHHHHHHHHHCCCcE
Q psy17793        227 KKDGILVYCT-CSLSVEENEAVIAWILHRHPEVE  259 (397)
Q Consensus       227 kpgG~lvysT-CS~~~eEnE~vV~~~L~~~~~~~  259 (397)
                      |+||++++.+ +|+...++...++++|.++..++
T Consensus       135 k~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~~i~  168 (223)
T d2ih2a1         135 KPGGVLVFVVPATWLVLEDFALLREFLAREGKTS  168 (223)
T ss_dssp             EEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEE
T ss_pred             ccCCceEEEEeeeeccCcchHHHHHHHHhcCCEE
Confidence            9999998876 56665555556655555543343

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.19  E-value=3.5e-11  Score=112.79  Aligned_cols=83  Identities=16%  Similarity=0.090  Sum_probs=69.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      +..+|+|+|||+|..++.++..  +..+|+|+|+|+.+++.+++|++++|+.+ +.+...|......          ...
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~----------~~~  177 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK----------EKF  177 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG----------GGT
T ss_pred             cccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccc----------ccc
Confidence            3458999999999999988864  56799999999999999999999999976 7778888766531          133


Q ss_pred             cCccEEEEcCCCCCCC
Q psy17793        164 ESFDRILLDAPCSGFG  179 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G  179 (397)
                      ++||+|++||||-.+.
T Consensus       178 ~~fDlIVsNPPYI~~~  193 (271)
T d1nv8a_         178 ASIEMILSNPPYVKSS  193 (271)
T ss_dssp             TTCCEEEECCCCBCGG
T ss_pred             CcccEEEEcccccCcc
Confidence            6899999999997654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.19  E-value=2.6e-11  Score=105.73  Aligned_cols=116  Identities=12%  Similarity=0.039  Sum_probs=83.0

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEEccccc
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL------------SSIQTHVYDSTR  147 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~------------~~v~~~~~D~~~  147 (397)
                      .|.+.||.+|||+|||+|..+..+|+.   +..|+|+|+|+.+++.++++++..+.            .++.+..+|...
T Consensus        15 ~l~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~   91 (201)
T d1pjza_          15 SLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA   91 (201)
T ss_dssp             HHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred             HcCCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence            367889999999999999999999985   57999999999999999998866543            224566677665


Q ss_pred             ccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy17793        148 INTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLK  227 (397)
Q Consensus       148 ~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLk  227 (397)
                      +.          +.....||.|++-    +      ......    ....       ...+++           +.++||
T Consensus        92 l~----------~~~~~~~D~i~~~----~------~l~~l~----~~~~-------~~~~~~-----------i~~~Lk  129 (201)
T d1pjza_          92 LT----------ARDIGHCAAFYDR----A------AMIALP----ADMR-------ERYVQH-----------LEALMP  129 (201)
T ss_dssp             ST----------HHHHHSEEEEEEE----S------CGGGSC----HHHH-------HHHHHH-----------HHHHSC
T ss_pred             cc----------cccccceeEEEEE----e------eeEecc----hhhh-------HHHHHH-----------HHHhcC
Confidence            52          1234679999861    1      011111    1111       456666           889999


Q ss_pred             CCcEEEEEecCCC
Q psy17793        228 KDGILVYCTCSLS  240 (397)
Q Consensus       228 pgG~lvysTCS~~  240 (397)
                      |||.++..+.+..
T Consensus       130 pgG~l~l~~~~~~  142 (201)
T d1pjza_         130 QACSGLLITLEYD  142 (201)
T ss_dssp             SEEEEEEEEESSC
T ss_pred             CCcEEEEEEcccc
Confidence            9999888766543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.19  E-value=1.3e-11  Score=112.56  Aligned_cols=100  Identities=13%  Similarity=0.211  Sum_probs=77.0

Q ss_pred             CCcEEEechhHHHHHhcc--CCCCCCeEEEEcCCCChHHHHHHHHcCC-----CcEEEEEeCCHHHHHHHHHHHHHh---
Q psy17793         64 SSMGILQNLPSILAGHYL--DVQPGQKVLDMCAAPGNKLTHIALLMND-----TGTLIALDKSKPRVTKLEETIKKL---  133 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L--~~~~g~~VLDlcagpG~kt~~lA~~~~~-----~~~V~avD~s~~rl~~l~~n~~~~---  133 (397)
                      .|..+.|-.-.....++|  ++++|++|||+|||+|..|..+|.+++.     ..+|+++|++++.++.+++|+.+.   
T Consensus        57 ~~~~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~  136 (223)
T d1r18a_          57 GGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS  136 (223)
T ss_dssp             TTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             CCceeehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh
Confidence            444444433333344555  6889999999999999999999998753     348999999999999999987654   


Q ss_pred             --CCCcEEEEEcccccccccchhhHHHhhhcccCccEEEEcCC
Q psy17793        134 --QLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       134 --g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                        ++.||.+..+|+....           ...+.||+|+++..
T Consensus       137 ~~~~~nv~~~~~d~~~~~-----------~~~~~fD~Iiv~~a  168 (223)
T d1r18a_         137 MLDSGQLLIVEGDGRKGY-----------PPNAPYNAIHVGAA  168 (223)
T ss_dssp             HHHHTSEEEEESCGGGCC-----------GGGCSEEEEEECSC
T ss_pred             hcCccEEEEEeccccccc-----------ccccceeeEEEEee
Confidence              5678999999987653           23468999999765

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=6.4e-11  Score=107.58  Aligned_cols=133  Identities=14%  Similarity=0.099  Sum_probs=93.5

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-----------------CCcEE
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-----------------LSSIQ  139 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-----------------~~~v~  139 (397)
                      ...++.+.++.+|||+|||.|..+..+|..   +..|+|+|+|+.+++.++++....+                 ..++.
T Consensus        37 ~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  113 (229)
T d2bzga1          37 LDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNIS  113 (229)
T ss_dssp             HHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEE
T ss_pred             HHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEE
Confidence            445567888999999999999999999984   5699999999999999988765321                 13588


Q ss_pred             EEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy17793        140 THVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFD  219 (397)
Q Consensus       140 ~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~  219 (397)
                      +.++|+..+.          +...+.||+|+.   |...       ....    +...       ...+++         
T Consensus       114 ~~~~d~~~l~----------~~~~~~fd~i~~---~~~l-------~~~~----~~~r-------~~~~~~---------  153 (229)
T d2bzga1         114 LYCCSIFDLP----------RTNIGKFDMIWD---RGAL-------VAIN----PGDR-------KCYADT---------  153 (229)
T ss_dssp             EEESCGGGGG----------GSCCCCEEEEEE---SSST-------TTSC----GGGH-------HHHHHH---------
T ss_pred             EEEcchhhcc----------ccccCceeEEEE---EEEE-------Eecc----chhh-------HHHHHH---------
Confidence            8899987763          234578999985   1111       0111    1111       344555         


Q ss_pred             ccccccccCCcEEEEEecCCCccc--------cHHHHHHHHHH
Q psy17793        220 WQGIPLLKKDGILVYCTCSLSVEE--------NEAVIAWILHR  254 (397)
Q Consensus       220 ~~a~~lLkpgG~lvysTCS~~~eE--------nE~vV~~~L~~  254 (397)
                        +.++|||||++++.+++..+.+        .++.+..++..
T Consensus       154 --~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~  194 (229)
T d2bzga1         154 --MFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK  194 (229)
T ss_dssp             --HHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT
T ss_pred             --HHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC
Confidence              8889999999999988754432        34556666654

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.14  E-value=5.5e-10  Score=102.89  Aligned_cols=119  Identities=17%  Similarity=0.080  Sum_probs=90.6

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccc
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSS  152 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~  152 (397)
                      ...+...++..+..+|||+|||+|..+..+++.. +..+++++|+ +..++.+++++...|+. +|+++.+|+...    
T Consensus        69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~----  142 (253)
T d1tw3a2          69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP----  142 (253)
T ss_dssp             THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC----
T ss_pred             HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh----
Confidence            3344556677778899999999999999999875 5678999998 67899999999999875 599999998653    


Q ss_pred             hhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE
Q psy17793        153 QIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL  232 (397)
Q Consensus       153 ~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l  232 (397)
                               ....||+|++-          .....++    .+..       .++|++           +.+.|||||+|
T Consensus       143 ---------~~~~~D~v~~~----------~vlh~~~----d~~~-------~~~L~~-----------~~~~LkPGG~l  181 (253)
T d1tw3a2         143 ---------LPRKADAIILS----------FVLLNWP----DHDA-------VRILTR-----------CAEALEPGGRI  181 (253)
T ss_dssp             ---------CSSCEEEEEEE----------SCGGGSC----HHHH-------HHHHHH-----------HHHTEEEEEEE
T ss_pred             ---------cccchhheeec----------cccccCC----chhh-------HHHHHH-----------HHHhcCCCcEE
Confidence                     23569999971          1222333    2222       567888           99999999999


Q ss_pred             EEEecCC
Q psy17793        233 VYCTCSL  239 (397)
Q Consensus       233 vysTCS~  239 (397)
                      +......
T Consensus       182 ~i~e~~~  188 (253)
T d1tw3a2         182 LIHERDD  188 (253)
T ss_dssp             EEEECCB
T ss_pred             EEEeccC
Confidence            8875543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.14  E-value=1.7e-11  Score=111.02  Aligned_cols=100  Identities=16%  Similarity=0.177  Sum_probs=74.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..+..++..   +.+|+|+|+|+.+++.++++    +..+  ++.+|+.++.           ++.
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~----~~~~--~~~~~~~~l~-----------~~~  100 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREK----GVKN--VVEAKAEDLP-----------FPS  100 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHH----TCSC--EEECCTTSCC-----------SCT
T ss_pred             CCCCEEEEECCCCchhccccccc---ceEEEEeecccccccccccc----cccc--cccccccccc-----------ccc
Confidence            46779999999999999999874   46899999999999998875    3333  4567777652           566


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      ++||+|++--                     ..+..+.+. .++|++           +.++|||||.++.++
T Consensus       101 ~~fD~ii~~~---------------------~~~~~~~d~-~~~l~~-----------i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         101 GAFEAVLALG---------------------DVLSYVENK-DKAFSE-----------IRRVLVPDGLLIATV  140 (246)
T ss_dssp             TCEEEEEECS---------------------SHHHHCSCH-HHHHHH-----------HHHHEEEEEEEEEEE
T ss_pred             ccccceeeec---------------------chhhhhhhH-HHHHHH-----------HHhhcCcCcEEEEEE
Confidence            8899998611                     111222222 557788           899999999999875

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.13  E-value=1.5e-10  Score=103.55  Aligned_cols=77  Identities=17%  Similarity=0.204  Sum_probs=62.2

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      +..++--.|++|||+|||+|..++.++.+  +...|+++|+|+.+++.+++|+     .++.+.++|+..+         
T Consensus        41 ~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~--ga~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~l---------  104 (197)
T d1ne2a_          41 IYNDGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSEI---------  104 (197)
T ss_dssp             HHHHTSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGGC---------
T ss_pred             HHHcCCCCCCEEEEeCCCCcHHHHHHHHc--CCCcccccccCHHHHHHHHHcc-----ccccEEEEehhhc---------
Confidence            44444457999999999999998765553  4568999999999999999885     4578899998654         


Q ss_pred             HhhhcccCccEEEEcCCC
Q psy17793        158 RMKLQKESFDRILLDAPC  175 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPC  175 (397)
                           +++||.|++|||.
T Consensus       105 -----~~~fD~Vi~NPPf  117 (197)
T d1ne2a_         105 -----SGKYDTWIMNPPF  117 (197)
T ss_dssp             -----CCCEEEEEECCCC
T ss_pred             -----CCcceEEEeCccc
Confidence                 3579999999994

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=9.6e-10  Score=101.61  Aligned_cols=151  Identities=10%  Similarity=0.065  Sum_probs=96.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      +.-++||+|||+|..+..+|... +..+|+|+|+|+.+++.+++|++++++.+ +.+...+........     ......
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~-----~~~~~~  134 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDA-----LKEESE  134 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTT-----STTCCS
T ss_pred             ccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhh-----hhhccc
Confidence            34589999999999999999987 46799999999999999999999999876 777766543321110     001234


Q ss_pred             cCccEEEEcCCCCCCCCC-------------cccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc
Q psy17793        164 ESFDRILLDAPCSGFGQR-------------PMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG  230 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~-------------p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG  230 (397)
                      ++||.|++|||+-.+...             |..........+...-..+.-. ++++++           +..+++..|
T Consensus       135 ~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~-~~ii~e-----------s~~~~~~~g  202 (250)
T d2h00a1         135 IIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV-KRIIHD-----------SLQLKKRLR  202 (250)
T ss_dssp             CCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH-HHHHHH-----------HHHHGGGBS
T ss_pred             CceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHH-HHHHHH-----------HHHHhhcCc
Confidence            679999999999764310             0000000000000000111112 678888           888888888


Q ss_pred             EEEEEecCCCccccHHHHHHHHHHCC
Q psy17793        231 ILVYCTCSLSVEENEAVIAWILHRHP  256 (397)
Q Consensus       231 ~lvysTCS~~~eEnE~vV~~~L~~~~  256 (397)
                      .+..-   +...++-.-|...|++.+
T Consensus       203 ~~t~~---ig~~~~l~~i~~~L~~~g  225 (250)
T d2h00a1         203 WYSCM---LGKKCSLAPLKEELRIQG  225 (250)
T ss_dssp             CEEEE---ESSTTSHHHHHHHHHHTT
T ss_pred             EEEEE---ecchhhHHHHHHHHHHcC
Confidence            76442   555677666778888774

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.10  E-value=4.1e-11  Score=114.68  Aligned_cols=159  Identities=11%  Similarity=0.111  Sum_probs=105.6

Q ss_pred             CcEEEechhHHHHH----hccCCCCCCeEEEEcCCCChHHHHHHHHcC----CCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         65 SMGILQNLPSILAG----HYLDVQPGQKVLDMCAAPGNKLTHIALLMN----DTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        65 g~~~~Qd~~S~l~~----~~L~~~~g~~VLDlcagpG~kt~~lA~~~~----~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      |.++..+.-+.+++    .++..+++.+|||.|||+|++.+.+...+.    ....++|+|+++.+++.++.++...+..
T Consensus        93 g~~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~  172 (328)
T d2f8la1          93 NHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK  172 (328)
T ss_dssp             GGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred             CeEECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh
Confidence            44444444444443    345678888999999999999998877553    2347999999999999999999888865


Q ss_pred             cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCc---ccccccCccchHHHHHHHHHHHHHHHHHHhh
Q psy17793        137 SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRP---MFYNANSFLNLDKKIKSYANIQKKLLQAVYR  213 (397)
Q Consensus       137 ~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p---~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~  213 (397)
                       ......|....            ....+||+|++|||++......   .......        ......+..++.+   
T Consensus       173 -~~~~~~d~~~~------------~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~--------~~~~~~~~~Fi~~---  228 (328)
T d2f8la1         173 -MTLLHQDGLAN------------LLVDPVDVVISDLPVGYYPDDENAKTFELCRE--------EGHSFAHFLFIEQ---  228 (328)
T ss_dssp             -CEEEESCTTSC------------CCCCCEEEEEEECCCSEESCHHHHTTSTTCCS--------SSCEEHHHHHHHH---
T ss_pred             -hhhhccccccc------------cccccccccccCCCCCCCccchhhhhcchhcc--------cCcchHHHHHHHH---
Confidence             45666776543            1346899999999986543210   0000000        0001122456777   


Q ss_pred             hhccccccccccccCCcEEEE-EecCCCccccHHHHHHHHHHC
Q psy17793        214 FVSLFDWQGIPLLKKDGILVY-CTCSLSVEENEAVIAWILHRH  255 (397)
Q Consensus       214 f~~~~~~~a~~lLkpgG~lvy-sTCS~~~eEnE~vV~~~L~~~  255 (397)
                              +.++|++||++++ ..+++....+++.++..|-++
T Consensus       229 --------~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~  263 (328)
T d2f8la1         229 --------GMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKN  263 (328)
T ss_dssp             --------HHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHH
T ss_pred             --------HHHhcCCCCceEEEecCccccCchhHHHHHHHHhC
Confidence                    9999999998755 456666666666666665554

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.10  E-value=1.8e-10  Score=101.77  Aligned_cols=142  Identities=20%  Similarity=0.275  Sum_probs=101.7

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      ..|.+++|+.++|+++|.||.|..+..   ..++|+|+|.++.+++.+++.    -.+++.+++.++..+..      ..
T Consensus        12 ~~l~~~~g~~~vD~T~G~GGhs~~iL~---~~~~viaiD~D~~ai~~a~~~----~~~~~~~~~~~f~~~~~------~l   78 (182)
T d1wg8a2          12 DLLAVRPGGVYVDATLGGAGHARGILE---RGGRVIGLDQDPEAVARAKGL----HLPGLTVVQGNFRHLKR------HL   78 (182)
T ss_dssp             HHHTCCTTCEEEETTCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHT----CCTTEEEEESCGGGHHH------HH
T ss_pred             HhcCCCCCCEEEEeCCCCcHHHHHHhc---ccCcEEEEhhhhhHHHHHhhc----cccceeEeehHHHHHHH------HH
Confidence            557899999999999999999988877   468999999999999887653    34678999988877631      11


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      .....+.+|.||+|--+|+....    .      ...   .+.. +.+.|..           +.++|++||++++.|  
T Consensus        79 ~~~~~~~vdgIl~DLGvSs~qld----~------~~r---e~~~-~~~~L~~-----------~~~~lk~gg~~~ii~--  131 (182)
T d1wg8a2          79 AALGVERVDGILADLGVSSFHLD----D------PSD---ELNA-LKEFLEQ-----------AAEVLAPGGRLVVIA--  131 (182)
T ss_dssp             HHTTCSCEEEEEEECSCCHHHHH----C------GGT---HHHH-HHHHHHH-----------HHHHEEEEEEEEEEE--
T ss_pred             HHcCCCccCEEEEEccCCHHHhh----c------chH---HHHH-HHHHHHH-----------HHhhhCCCCeEEEEe--
Confidence            12334679999999877664321    0      011   2222 2557787           999999999999984  


Q ss_pred             CCccccHHHHHHHHHHCCCcEEEe
Q psy17793        239 LSVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       239 ~~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                      ++..|+. .|..++++. .++.+.
T Consensus       132 fhs~Ed~-ivk~~~~e~-~~k~i~  153 (182)
T d1wg8a2         132 FHSLEDR-VVKRFLRES-GLKVLT  153 (182)
T ss_dssp             CSHHHHH-HHHHHHHHH-CSEESC
T ss_pred             cccchhH-HHHHHHhhc-cceecc
Confidence            5666654 677777765 455543

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.06  E-value=2.1e-10  Score=101.89  Aligned_cols=96  Identities=18%  Similarity=0.226  Sum_probs=71.7

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .++.+|||+|||+|..+..++       +++|+|.|+.+++.++++       ++.+.++|+.++.           +.+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~-----------~~~   89 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR-------GVFVLKGTAENLP-----------LKD   89 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCC-----------SCT
T ss_pred             CCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc-------ccccccccccccc-----------ccc
Confidence            456789999999998876552       368999999999998763       5789999998763           456


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      ++||.|++-                      ..+..+.+. .++|++           +.++|||||.++..+..
T Consensus        90 ~~fD~I~~~----------------------~~l~h~~d~-~~~l~~-----------~~~~L~pgG~l~i~~~~  130 (208)
T d1vlma_          90 ESFDFALMV----------------------TTICFVDDP-ERALKE-----------AYRILKKGGYLIVGIVD  130 (208)
T ss_dssp             TCEEEEEEE----------------------SCGGGSSCH-HHHHHH-----------HHHHEEEEEEEEEEEEC
T ss_pred             ccccccccc----------------------ccccccccc-ccchhh-----------hhhcCCCCceEEEEecC
Confidence            789999971                      011111112 456777           99999999999988754

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.04  E-value=1.5e-10  Score=107.14  Aligned_cols=111  Identities=14%  Similarity=0.129  Sum_probs=82.8

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      ..+...++.+|||+|||+|..|.+++...  ...|+++|.|+.+++.+++++..  .+++++.+.|+..+.         
T Consensus        87 ~~l~~~~~~~vLD~GcG~G~~t~~ll~~~--~~~v~~vD~s~~~l~~a~~~~~~--~~~~~~~~~d~~~~~---------  153 (254)
T d1xtpa_          87 ASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAG--MPVGKFILASMETAT---------  153 (254)
T ss_dssp             HTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTT--SSEEEEEESCGGGCC---------
T ss_pred             hhCCCCCCCeEEEecccCChhhHHHHhhc--CceEEEEcCCHHHHHhhhccccc--cccceeEEccccccc---------
Confidence            34556677899999999999999888753  34899999999999999987653  356889999988763         


Q ss_pred             hhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        159 MKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                        +..++||+|++--.          ..+.+    ...+       .++|++           +.+.|||||.|++..
T Consensus       154 --~~~~~fD~I~~~~v----------l~hl~----d~d~-------~~~l~~-----------~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         154 --LPPNTYDLIVIQWT----------AIYLT----DADF-------VKFFKH-----------CQQALTPNGYIFFKE  197 (254)
T ss_dssp             --CCSSCEEEEEEESC----------GGGSC----HHHH-------HHHHHH-----------HHHHEEEEEEEEEEE
T ss_pred             --cCCCccceEEeecc----------ccccc----hhhh-------HHHHHH-----------HHHhcCCCcEEEEEe
Confidence              34578999997221          11111    1111       466777           899999999998864

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=4.5e-10  Score=101.52  Aligned_cols=150  Identities=13%  Similarity=0.146  Sum_probs=103.0

Q ss_pred             chhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEccccccc
Q psy17793         71 NLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRIN  149 (397)
Q Consensus        71 d~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~  149 (397)
                      .....++..++......+|||+|+|.|.-|+.+|..+..+++|+++|+++..++.+++++++.|+.+ |+++.+|+....
T Consensus        42 ~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l  121 (214)
T d2cl5a1          42 DAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLI  121 (214)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccc
Confidence            3444555555554445699999999999999999988778999999999999999999999999965 999999998764


Q ss_pred             ccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy17793        150 TSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD  229 (397)
Q Consensus       150 ~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg  229 (397)
                      ...     ...+....||.|++|.-                   +.....     ...+..           +.++||||
T Consensus       122 ~~l-----~~~~~~~~~D~ifiD~~-------------------~~~~~~-----~~~l~~-----------~~~lLkpG  161 (214)
T d2cl5a1         122 PQL-----KKKYDVDTLDMVFLDHW-------------------KDRYLP-----DTLLLE-----------KCGLLRKG  161 (214)
T ss_dssp             GGH-----HHHSCCCCEEEEEECSC-------------------GGGHHH-----HHHHHH-----------HTTCEEEE
T ss_pred             cch-----hhcccccccceeeeccc-------------------cccccc-----HHHHHH-----------HhCccCCC
Confidence            220     01123467999999864                   111111     112344           78999999


Q ss_pred             cEEEEEecCCCccccHHHHHHHHHHCCCcEEEec
Q psy17793        230 GILVYCTCSLSVEENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       230 G~lvysTCS~~~eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                      |.|+.-. .+.+. .++.. ..++..+.+.....
T Consensus       162 GvIv~Dd-vl~~g-~~~~~-~~vr~~~~~~~~~~  192 (214)
T d2cl5a1         162 TVLLADN-VIVPG-TPDFL-AYVRGSSSFECTHY  192 (214)
T ss_dssp             EEEEESC-CCCCC-CHHHH-HHHHHCTTEEEEEE
T ss_pred             cEEEEeC-cCCCC-ChHHH-HHHhccCceeehhh
Confidence            9887642 23332 23333 34556666665543

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4e-10  Score=102.26  Aligned_cols=123  Identities=15%  Similarity=0.176  Sum_probs=94.5

Q ss_pred             hHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEccccccccc
Q psy17793         73 PSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTS  151 (397)
Q Consensus        73 ~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~  151 (397)
                      ...++..+......++||++|++.|.-|..+|..+..+|+|+++|.++...+.+++++++.|+.+ ++++.+|+......
T Consensus        47 ~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~  126 (219)
T d2avda1          47 QAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDE  126 (219)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchh
Confidence            34555555555556799999999999999999988878999999999999999999999999876 99999998765311


Q ss_pred             chhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcE
Q psy17793        152 SQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGI  231 (397)
Q Consensus       152 ~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~  231 (397)
                           .......+.||.|++|+-                   +...       ...++.           +.++|+|||.
T Consensus       127 -----~~~~~~~~~fD~ifiD~d-------------------k~~y-------~~~~~~-----------~~~lL~~GGv  164 (219)
T d2avda1         127 -----LLAAGEAGTFDVAVVDAD-------------------KENC-------SAYYER-----------CLQLLRPGGI  164 (219)
T ss_dssp             -----HHHTTCTTCEEEEEECSC-------------------STTH-------HHHHHH-----------HHHHEEEEEE
T ss_pred             -----hhhhcccCCccEEEEeCC-------------------HHHH-------HHHHHH-----------HHHHhcCCcE
Confidence                 001123468999999875                   1212       233444           7889999999


Q ss_pred             EEEEec
Q psy17793        232 LVYCTC  237 (397)
Q Consensus       232 lvysTC  237 (397)
                      |++-.-
T Consensus       165 ii~Dn~  170 (219)
T d2avda1         165 LAVLRV  170 (219)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            998744

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=2.4e-10  Score=106.50  Aligned_cols=72  Identities=22%  Similarity=0.223  Sum_probs=60.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      +.++.+|||+|||+|..+..+++.. ...+++|+|+|+.+++.++++     ..++.+..+|+..+.           +.
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~-----~~~~~~~~~d~~~l~-----------~~  144 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRLP-----------FS  144 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHH-----CTTSEEEECCTTSCS-----------BC
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhcc-----cccccceeeehhhcc-----------CC
Confidence            4567899999999999999999875 457999999999999988764     257889999998763           56


Q ss_pred             ccCccEEEE
Q psy17793        163 KESFDRILL  171 (397)
Q Consensus       163 ~~~fD~Il~  171 (397)
                      .++||.|++
T Consensus       145 ~~sfD~v~~  153 (268)
T d1p91a_         145 DTSMDAIIR  153 (268)
T ss_dssp             TTCEEEEEE
T ss_pred             CCCEEEEee
Confidence            788999996

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=6.1e-10  Score=104.50  Aligned_cols=126  Identities=12%  Similarity=0.093  Sum_probs=84.4

Q ss_pred             HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC----cEEEEEcccccccc
Q psy17793         75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS----SIQTHVYDSTRINT  150 (397)
Q Consensus        75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~----~v~~~~~D~~~~~~  150 (397)
                      .++...|..+++.+|||+|||+|..+..+|..   +..|+|+|+|+.+++.++++....+..    ...+...|+.....
T Consensus        46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (292)
T d1xvaa_          46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK  122 (292)
T ss_dssp             HHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred             HHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc
Confidence            44556677778889999999999999999984   458999999999999999999887754    23444455443310


Q ss_pred             cchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCc
Q psy17793        151 SSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDG  230 (397)
Q Consensus       151 ~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG  230 (397)
                             .. ...+.||.|++--.  ....-++.  ...    ..       -++.+|++           +.++|||||
T Consensus       123 -------~~-~~~~~fd~v~~~~~--~~~~~~~~--~~~----~~-------~~~~~l~~-----------~~~~LkpgG  168 (292)
T d1xvaa_         123 -------DV-PAGDGFDAVICLGN--SFAHLPDS--KGD----QS-------EHRLALKN-----------IASMVRPGG  168 (292)
T ss_dssp             -------HS-CCTTCEEEEEECSS--CGGGSCCT--TSS----SH-------HHHHHHHH-----------HHHTEEEEE
T ss_pred             -------cc-CCCCCceEEEEecC--chhhcCCc--ccC----hH-------HHHHHHHH-----------HHHHcCcCc
Confidence                   01 12467999996110  00000000  000    01       12667888           999999999


Q ss_pred             EEEEEec
Q psy17793        231 ILVYCTC  237 (397)
Q Consensus       231 ~lvysTC  237 (397)
                      +|++.+.
T Consensus       169 ~li~~~~  175 (292)
T d1xvaa_         169 LLVIDHR  175 (292)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeec
Confidence            9999743

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.00  E-value=1.4e-10  Score=104.94  Aligned_cols=104  Identities=13%  Similarity=0.160  Sum_probs=75.2

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      +..-..+.+|||+|||+|..+..++..   +.+|+|+|+|+.+++.++++..    .++.++.+|+....          
T Consensus        15 ~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~----------   77 (225)
T d2p7ia1          15 FTPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQ----------   77 (225)
T ss_dssp             HGGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCC----------
T ss_pred             hhhhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccc----cccccccccccccc----------
Confidence            334445778999999999999888763   3579999999999999987632    46889999887652          


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcccccccc-ccccCCcEEEEEe
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGI-PLLKKDGILVYCT  236 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~-~lLkpgG~lvysT  236 (397)
                        .+++||+|++    ++      ..            +.+.+. .++|.+           +. ++|||||.++.++
T Consensus        78 --~~~~fD~I~~----~~------vl------------eh~~d~-~~~l~~-----------i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          78 --LPRRYDNIVL----TH------VL------------EHIDDP-VALLKR-----------INDDWLAEGGRLFLVC  119 (225)
T ss_dssp             --CSSCEEEEEE----ES------CG------------GGCSSH-HHHHHH-----------HHHTTEEEEEEEEEEE
T ss_pred             --cccccccccc----cc------ee------------EecCCH-HHHHHH-----------HHHHhcCCCceEEEEe
Confidence              3468999997    11      11            111111 445555           65 7899999999875

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.95  E-value=8.6e-10  Score=107.69  Aligned_cols=101  Identities=20%  Similarity=0.097  Sum_probs=71.9

Q ss_pred             CCCcEE--EechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc---
Q psy17793         63 DSSMGI--LQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS---  137 (397)
Q Consensus        63 ~~g~~~--~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~---  137 (397)
                      ..+.||  .|....-+.+.++....+.+|||+.||+|..++..|...+ ...|+++|+|+.+++.+++|++.+++.+   
T Consensus        21 ~~~vFYNp~q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~   99 (375)
T d2dula1          21 DSPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRE   99 (375)
T ss_dssp             --CCCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEE
T ss_pred             CCCcccCHHHhhhhHHHHHHHHHhCCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCcccccc
Confidence            344455  4555544433333333577999999999999998887654 5689999999999999999999998754   


Q ss_pred             ------------EEEEEcccccccccchhhHHHhhhcccCccEEEEcCC
Q psy17793        138 ------------IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       138 ------------v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                                  +.+.+.|+....          ....+.||+|.+||.
T Consensus       100 ~~~~~~~~~~~~~~~~~~Da~~~~----------~~~~~~fDvIDiDPf  138 (375)
T d2dula1         100 SKGRAILKGEKTIVINHDDANRLM----------AERHRYFHFIDLDPF  138 (375)
T ss_dssp             CSSEEEEESSSEEEEEESCHHHHH----------HHSTTCEEEEEECCS
T ss_pred             ccccccccccceeEeehhhhhhhh----------HhhcCcCCcccCCCC
Confidence                        445555554432          123457999999994

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=2.5e-09  Score=93.97  Aligned_cols=133  Identities=15%  Similarity=0.120  Sum_probs=89.0

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .+++..|||+|||||+++..+++.+.+.+.|+++|+.+-           ..++++.++.+|.......   +.......
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~---~~~~~~~~   85 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVM---KALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHH---HHHHHHHT
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhh---hhhhhhcc
Confidence            368999999999999999999998888899999998662           1467789999998764211   11111234


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE  242 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e  242 (397)
                      ..+||+|++|---.-+|.              ....+.  .+.+|+..++.|       |.++||+||.+|.-.  +..+
T Consensus        86 ~~~~DlVlSD~ap~~sg~--------------~~~d~~--~~~~L~~~~l~~-------a~~~Lk~gG~fV~K~--F~g~  140 (180)
T d1ej0a_          86 DSKVQVVMSDMAPNMSGT--------------PAVDIP--RAMYLVELALEM-------CRDVLAPGGSFVVKV--FQGE  140 (180)
T ss_dssp             TCCEEEEEECCCCCCCSC--------------HHHHHH--HHHHHHHHHHHH-------HHHHEEEEEEEEEEE--ESST
T ss_pred             CcceeEEEecccchhccc--------------chhHHH--HHHHHHHHHHHh-------hhhccCCCCcEEEEE--ecCc
Confidence            467999999965322221              222221  224455555555       899999999999874  3344


Q ss_pred             ccHHHHHHHHHHC
Q psy17793        243 ENEAVIAWILHRH  255 (397)
Q Consensus       243 EnE~vV~~~L~~~  255 (397)
                      +.++.+ ..|+.+
T Consensus       141 ~~~~l~-~~l~~~  152 (180)
T d1ej0a_         141 GFDEYL-REIRSL  152 (180)
T ss_dssp             THHHHH-HHHHHH
T ss_pred             cHHHHH-HHHHhh
Confidence            444444 455544

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=4.4e-10  Score=106.67  Aligned_cols=81  Identities=17%  Similarity=0.137  Sum_probs=63.7

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHH
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      .....+|++|||+|||+|..++.+|+.  +..+|+|+|.|+.+.. +++++++++. ++|.++.+|+.++.         
T Consensus        30 ~~~~~~~~~VLDiGcG~G~lsl~aa~~--Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~---------   97 (311)
T d2fyta1          30 NPHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVH---------   97 (311)
T ss_dssp             CGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSC---------
T ss_pred             ccccCCcCEEEEECCCCCHHHHHHHHc--CCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhc---------
Confidence            345567899999999999999988874  4569999999998754 5566666665 46999999998763         


Q ss_pred             hhhcccCccEEEEcCC
Q psy17793        159 MKLQKESFDRILLDAP  174 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpP  174 (397)
                        ...++||+|++++.
T Consensus        98 --~~~~~~D~Ivse~~  111 (311)
T d2fyta1          98 --LPVEKVDVIISEWM  111 (311)
T ss_dssp             --CSCSCEEEEEECCC
T ss_pred             --CccccceEEEEeee
Confidence              34578999998765

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.92  E-value=1.2e-09  Score=99.66  Aligned_cols=123  Identities=19%  Similarity=0.224  Sum_probs=92.9

Q ss_pred             HHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccc
Q psy17793         74 SILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSS  152 (397)
Q Consensus        74 S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~  152 (397)
                      ..++..++......+||++|++.|.-|+.+|..++..|+|+++|.++...+.+++++++.|+.+ |+++.+|+.......
T Consensus        48 g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l  127 (227)
T d1susa1          48 GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEM  127 (227)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHH
Confidence            3455445444456699999999999999999988878999999999999999999999999876 999999997664210


Q ss_pred             hhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEE
Q psy17793        153 QIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGIL  232 (397)
Q Consensus       153 ~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~l  232 (397)
                      .    ......++||.|++|+-                   +...       ...++.           +.++|+|||.|
T Consensus       128 ~----~~~~~~~~fD~iFiDa~-------------------k~~y-------~~~~e~-----------~~~ll~~gGii  166 (227)
T d1susa1         128 I----KDEKNHGSYDFIFVDAD-------------------KDNY-------LNYHKR-----------LIDLVKVGGVI  166 (227)
T ss_dssp             H----HCGGGTTCBSEEEECSC-------------------STTH-------HHHHHH-----------HHHHBCTTCCE
T ss_pred             H----hccccCCceeEEEeccc-------------------hhhh-------HHHHHH-----------HHhhcCCCcEE
Confidence            0    00112457999999985                   1111       233444           77899999999


Q ss_pred             EEEec
Q psy17793        233 VYCTC  237 (397)
Q Consensus       233 vysTC  237 (397)
                      +.-..
T Consensus       167 i~DNv  171 (227)
T d1susa1         167 GYDNT  171 (227)
T ss_dssp             EEETT
T ss_pred             EEccC
Confidence            98744

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.1e-09  Score=98.04  Aligned_cols=141  Identities=15%  Similarity=0.009  Sum_probs=88.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE------------------------
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI------------------------  138 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v------------------------  138 (397)
                      ..+|.+|||+|||+|..+..++..  ....|+|+|+|+.+++.++++++..+....                        
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  126 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence            456889999999999988766653  334799999999999999999886653210                        


Q ss_pred             ------EEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHh
Q psy17793        139 ------QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVY  212 (397)
Q Consensus       139 ------~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~  212 (397)
                            .....+...       +....++..+.||+|++-                  ..+ ..+....+-...++++  
T Consensus       127 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~fD~i~~~------------------~~l-~~~~~~~~~~~~~l~~--  178 (257)
T d2a14a1         127 LRAAVKRVLKCDVHL-------GNPLAPAVLPLADCVLTL------------------LAM-ECACCSLDAYRAALCN--  178 (257)
T ss_dssp             HHHHEEEEEECCTTS-------SSTTTTCCCCCEEEEEEE------------------SCH-HHHCSSHHHHHHHHHH--
T ss_pred             Hhhhhhccccccccc-------ccccccccCCcccEEeeh------------------hhH-HHhcccHHHHHHHHHH--
Confidence                  000000000       001123455789999861                  011 2221111122667888  


Q ss_pred             hhhccccccccccccCCcEEEEEecCCCc------------cccHHHHHHHHHHCCCcEEEec
Q psy17793        213 RFVSLFDWQGIPLLKKDGILVYCTCSLSV------------EENEAVIAWILHRHPEVELVQT  263 (397)
Q Consensus       213 ~f~~~~~~~a~~lLkpgG~lvysTCS~~~------------eEnE~vV~~~L~~~~~~~l~~~  263 (397)
                               +.++|||||.++.++..-..            .=+++.+..+|++. +++++.+
T Consensus       179 ---------i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~v~~~  231 (257)
T d2a14a1         179 ---------LASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDA-GFDIEQL  231 (257)
T ss_dssp             ---------HHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHT-TEEEEEE
T ss_pred             ---------HHhccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHC-CCEEEEE
Confidence                     99999999999998653211            11356677778877 5776664

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=1.4e-09  Score=103.60  Aligned_cols=111  Identities=16%  Similarity=0.129  Sum_probs=81.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ..+|++|||+|||+|..+..+|+.  +..+|+|+|.++. ...++++++++++.+ |.++++|+..+.           +
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~--Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~-----------~   96 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVE-----------L   96 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCC-----------C
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHh--CCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcc-----------c
Confidence            457899999999999999877774  4568999999975 577788899998865 999999998763           3


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                      ..++||+|+++...+..       ...      ..+       ..++..           ..++|||||+++=+.++
T Consensus        97 ~~~~~D~ivs~~~~~~l-------~~e------~~~-------~~~l~~-----------~~r~Lkp~G~iiP~~~~  142 (316)
T d1oria_          97 PVEKVDIIISEWMGYCL-------FYE------SML-------NTVLHA-----------RDKWLAPDGLIFPDRAT  142 (316)
T ss_dssp             SSSCEEEEEECCCBBTB-------TBT------CCH-------HHHHHH-----------HHHHEEEEEEEESCEEE
T ss_pred             ccceeEEEeeeeeeeee-------ccH------HHH-------HHHHHH-----------HHhcCCCCeEEEeeeEE
Confidence            45789999987552221       000      111       345555           77899999999744443

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=2.2e-09  Score=102.55  Aligned_cols=78  Identities=18%  Similarity=0.111  Sum_probs=64.5

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccchhhHHHhhh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      ..+|.+|||+|||+|..+..+|+.  +..+|+|+|.|+ +++.+++++++++.. +|+++.+|+..+.           +
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~--Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~-----------~  101 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH-----------L  101 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-----------C
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHh--CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc-----------C
Confidence            457899999999999999877774  456999999986 678899999999875 4999999988763           3


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      +.++||+|+++..
T Consensus       102 ~~~~~D~i~se~~  114 (328)
T d1g6q1_         102 PFPKVDIIISEWM  114 (328)
T ss_dssp             SSSCEEEEEECCC
T ss_pred             cccceeEEEEEec
Confidence            4578999998654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.8e-09  Score=102.15  Aligned_cols=70  Identities=9%  Similarity=0.038  Sum_probs=58.8

Q ss_pred             HhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-------CC--CcEEEEEcccccc
Q psy17793         78 GHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL-------QL--SSIQTHVYDSTRI  148 (397)
Q Consensus        78 ~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~-------g~--~~v~~~~~D~~~~  148 (397)
                      ...+.++++++|||+|||.|..+.++|... +..+++|+|+++.+++.++++++.+       |.  .+|+++++|+.+.
T Consensus       144 ~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~  222 (328)
T d1nw3a_         144 IDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE  222 (328)
T ss_dssp             HHHSCCCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH
T ss_pred             HHHcCCCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc
Confidence            355678999999999999999999998875 4568999999999999988877653       33  4699999999875

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.87  E-value=1.6e-08  Score=93.35  Aligned_cols=114  Identities=18%  Similarity=0.140  Sum_probs=87.4

Q ss_pred             HHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEEcccccccccchhh
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS-IQTHVYDSTRINTSSQID  155 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d  155 (397)
                      +...++..+..+|||+|||+|..+..+++.. +..+++++|+ +..++.++++++..|..+ +.+..+|....       
T Consensus        73 ~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~-------  143 (256)
T d1qzza2          73 PADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-------  143 (256)
T ss_dssp             HHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-------
T ss_pred             HHhcCCCccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc-------
Confidence            3344566677899999999999999999985 5679999997 888999999999998754 88988887653       


Q ss_pred             HHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        156 IERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                            .+..||+|++          ..+...|+    .+..       .++|++           +.+.|||||+|+..
T Consensus       144 ------~p~~~D~v~~----------~~vLh~~~----d~~~-------~~lL~~-----------i~~~LkpgG~llI~  185 (256)
T d1qzza2         144 ------LPVTADVVLL----------SFVLLNWS----DEDA-------LTILRG-----------CVRALEPGGRLLVL  185 (256)
T ss_dssp             ------CSCCEEEEEE----------ESCGGGSC----HHHH-------HHHHHH-----------HHHHEEEEEEEEEE
T ss_pred             ------ccccchhhhc----------cccccccC----cHHH-------HHHHHH-----------HHhhcCCcceeEEE
Confidence                  2346999997          12233344    2222       567888           99999999999876


Q ss_pred             ec
Q psy17793        236 TC  237 (397)
Q Consensus       236 TC  237 (397)
                      .-
T Consensus       186 d~  187 (256)
T d1qzza2         186 DR  187 (256)
T ss_dssp             EC
T ss_pred             Ee
Confidence            53

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.84  E-value=3.5e-09  Score=104.81  Aligned_cols=163  Identities=18%  Similarity=0.083  Sum_probs=112.5

Q ss_pred             CCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCC------------cEEEEEeCCHHHHHHHHHHHH
Q psy17793         64 SSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT------------GTLIALDKSKPRVTKLEETIK  131 (397)
Q Consensus        64 ~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~------------~~V~avD~s~~rl~~l~~n~~  131 (397)
                      .|.|+-...-+.+++.++.+.++++|+|.|||+|++.+.+...+...            ..++++|+++.....++.|+.
T Consensus       141 ~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~  220 (425)
T d2okca1         141 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY  220 (425)
T ss_dssp             CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred             chhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh
Confidence            47777777778888899999999999999999999999888766422            249999999999999999998


Q ss_pred             HhCCC--cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHH
Q psy17793        132 KLQLS--SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQ  209 (397)
Q Consensus       132 ~~g~~--~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~  209 (397)
                      ..|..  +..+...|....            .....||+|+.|||.+.............+..      .-...+..++.
T Consensus       221 l~g~~~~~~~i~~~d~l~~------------~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~------~~~~~~~~Fi~  282 (425)
T d2okca1         221 LHGIGTDRSPIVCEDSLEK------------EPSTLVDVILANPPFGTRPAGSVDINRPDFYV------ETKNNQLNFLQ  282 (425)
T ss_dssp             HTTCCSSCCSEEECCTTTS------------CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSS------CCSCHHHHHHH
T ss_pred             hcCCccccceeecCchhhh------------hcccccceEEecCCCCCCccccchhhhhhccc------ccccHHHHHHH
Confidence            88864  355667777643            23468999999999966542111000000000      00011244677


Q ss_pred             HHhhhhccccccccccccCCcEEEEEec--CCCccc-cHHHHHHHHHHC
Q psy17793        210 AVYRFVSLFDWQGIPLLKKDGILVYCTC--SLSVEE-NEAVIAWILHRH  255 (397)
Q Consensus       210 ~~~~f~~~~~~~a~~lLkpgG~lvysTC--S~~~eE-nE~vV~~~L~~~  255 (397)
                      +           +.++|++||++++.+=  ++.... .+.+-+++++++
T Consensus       283 ~-----------~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~~  320 (425)
T d2okca1         283 H-----------MMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQDF  320 (425)
T ss_dssp             H-----------HHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHE
T ss_pred             H-----------HHHhcCCCCeEEEEechHHhhhhhhHHHHHHHHHHhc
Confidence            7           8999999998877653  343333 344556666665

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.5e-09  Score=100.87  Aligned_cols=117  Identities=15%  Similarity=0.120  Sum_probs=76.1

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcC-----CCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEEc--ccccccccchh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMN-----DTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHVY--DSTRINTSSQI  154 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~-----~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~~--D~~~~~~~~~~  154 (397)
                      .+++.+|||+|||+|..+..++..+.     ....++|+|.|+.+++.+++++++.. +.++.+...  ++....     
T Consensus        38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----  112 (280)
T d1jqea_          38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQ-----  112 (280)
T ss_dssp             TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHH-----
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhc-----
Confidence            34555899999999999988876541     23478999999999999999987653 345554332  222110     


Q ss_pred             hHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEE
Q psy17793        155 DIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVY  234 (397)
Q Consensus       155 d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvy  234 (397)
                      +........++||+|++-          ...            ..+.+. .+.|++           +.++|||||.|+.
T Consensus       113 ~~~~~~~~~~~fD~I~~~----------~~l------------~~~~d~-~~~l~~-----------l~~~LkpgG~l~i  158 (280)
T d1jqea_         113 SRMLEKKELQKWDFIHMI----------QML------------YYVKDI-PATLKF-----------FHSLLGTNAKMLI  158 (280)
T ss_dssp             HHHTTSSSCCCEEEEEEE----------SCG------------GGCSCH-HHHHHH-----------HHHTEEEEEEEEE
T ss_pred             chhcccCCCCceeEEEEc----------cce------------ecCCCH-HHHHHH-----------HHhhCCCCCEEEE
Confidence            011122456789999970          000            011111 456777           8899999999988


Q ss_pred             EecC
Q psy17793        235 CTCS  238 (397)
Q Consensus       235 sTCS  238 (397)
                      .+.+
T Consensus       159 ~~~~  162 (280)
T d1jqea_         159 IVVS  162 (280)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            7544

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=7.5e-09  Score=95.76  Aligned_cols=143  Identities=13%  Similarity=0.060  Sum_probs=87.4

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--------------------------
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS--------------------------  136 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~--------------------------  136 (397)
                      ...|.+|||+|||||..++..+..  ...+|+|+|.|+.+++.+++++++.+..                          
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~--~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  129 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ  129 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcc--cCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence            456889999999999887655543  3458999999999999999887643311                          


Q ss_pred             ----cEEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHH-HHHHHHHHHHHHH
Q psy17793        137 ----SIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIK-SYANIQKKLLQAV  211 (397)
Q Consensus       137 ----~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~-~l~~~Q~~lL~~~  211 (397)
                          .-.+...|.+.-...     .......+.||+|++                  ..-+ ..+. +.... .+.|++ 
T Consensus       130 ~~~~~~~~~~~Dv~~~~~~-----~~~~~~~~~fD~V~~------------------~~~l-~~i~~~~~~~-~~~l~~-  183 (263)
T d2g72a1         130 LRARVKRVLPIDVHQPQPL-----GAGSPAPLPADALVS------------------AFCL-EAVSPDLASF-QRALDH-  183 (263)
T ss_dssp             HHHHEEEEECCCTTSSSTT-----CSSCSSCSSEEEEEE------------------ESCH-HHHCSSHHHH-HHHHHH-
T ss_pred             hhhhhhccccccccCCCcc-----ccCCcCcCccCeeee------------------HHHH-HHHccCHHHH-HHHHHH-
Confidence                012223333321100     001123457899986                  0011 2221 11122 677888 


Q ss_pred             hhhhccccccccccccCCcEEEEEecCC------------CccccHHHHHHHHHHCCCcEEEecC
Q psy17793        212 YRFVSLFDWQGIPLLKKDGILVYCTCSL------------SVEENEAVIAWILHRHPEVELVQTL  264 (397)
Q Consensus       212 ~~f~~~~~~~a~~lLkpgG~lvysTCS~------------~~eEnE~vV~~~L~~~~~~~l~~~~  264 (397)
                                +.++|||||.|+..+---            +..=+++.+..++++. +++++...
T Consensus       184 ----------~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~a-Gf~v~~~~  237 (263)
T d2g72a1         184 ----------ITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRS-GYKVRDLR  237 (263)
T ss_dssp             ----------HHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHT-TEEEEEEE
T ss_pred             ----------HHHHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHC-CCeEEEEE
Confidence                      999999999998875310            1123667788888887 57776543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=2.7e-08  Score=97.69  Aligned_cols=55  Identities=13%  Similarity=0.139  Sum_probs=48.8

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ  134 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g  134 (397)
                      ..+++++|++|||+|||.|..+.++|...+ .++|+|+|+++.+++.++++++..+
T Consensus       210 ~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~  264 (406)
T d1u2za_         210 QQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELK  264 (406)
T ss_dssp             HHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHh
Confidence            456789999999999999999999998764 4689999999999999999988753

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=3.3e-08  Score=100.24  Aligned_cols=163  Identities=10%  Similarity=-0.018  Sum_probs=105.3

Q ss_pred             CCCcEEEechhHHHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCC-----------------cEEEEEeCCHHHHHH
Q psy17793         63 DSSMGILQNLPSILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDT-----------------GTLIALDKSKPRVTK  125 (397)
Q Consensus        63 ~~g~~~~Qd~~S~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~-----------------~~V~avD~s~~rl~~  125 (397)
                      ..|.|+-...-+.+++.++.++++++|+|-|||+|++.+.+...+...                 ..++|+|+++.....
T Consensus       142 ~~GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~l  221 (524)
T d2ar0a1         142 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL  221 (524)
T ss_dssp             ---CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred             ccchhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHH
Confidence            347788877788888999999999999999999999998877765321                 258999999999999


Q ss_pred             HHHHHHHhCCCc-----EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHH
Q psy17793        126 LEETIKKLQLSS-----IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSY  200 (397)
Q Consensus       126 l~~n~~~~g~~~-----v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l  200 (397)
                      ++.|+-..|...     -.+...|....          ......+||+|+.|||.+.............    ..     
T Consensus       222 a~~nl~l~~~~~~i~~~~~~~~~~~l~~----------d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~----~~-----  282 (524)
T d2ar0a1         222 ALMNCLLHDIEGNLDHGGAIRLGNTLGS----------DGENLPKAHIVATNPPFGSAAGTNITRTFVH----PT-----  282 (524)
T ss_dssp             HHHHHHTTTCCCBGGGTBSEEESCTTSH----------HHHTSCCEEEEEECCCCTTCSSCCCCSCCSS----CC-----
T ss_pred             HHHHHHhhcccccccccchhhhhhhhhh----------cccccccceeEEecCCccccccccchhhhcc----cc-----
Confidence            999988777532     11222222211          1123457999999999976542111000000    00     


Q ss_pred             HHHHHHHHHHHhhhhccccccccccccCCcEEEEEec-CC-CccccHH-HHHHHHHHC
Q psy17793        201 ANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTC-SL-SVEENEA-VIAWILHRH  255 (397)
Q Consensus       201 ~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTC-S~-~~eEnE~-vV~~~L~~~  255 (397)
                      ...+..++.+           ++++||+||++++.+= ++ .....+. +-+++++++
T Consensus       283 ~~~~~~Fi~~-----------~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~~  329 (524)
T d2ar0a1         283 SNKQLCFMQH-----------IIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC  329 (524)
T ss_dssp             SCHHHHHHHH-----------HHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE
T ss_pred             ccccHHHHHH-----------HHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHHcC
Confidence            0112346777           8999999999888763 33 2333333 455556654

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=1.2e-06  Score=78.16  Aligned_cols=101  Identities=19%  Similarity=0.284  Sum_probs=81.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      ++++|+|+|+|.|--++-+|-.. +..+++.+|.+..++.-+++-+.++|++|+++++..+....            ...
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~-p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~------------~~~  131 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP------------SEP  131 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC------------CCS
T ss_pred             cCCceeeeeccCCceeeehhhhc-ccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc------------ccc
Confidence            35799999999999999888764 67899999999999999999999999999999999887753            335


Q ss_pred             CccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        165 SFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                      +||+|++=|                +..+           ..++.-           +..+++++|+++.-.
T Consensus       132 ~fD~V~sRA----------------~~~~-----------~~ll~~-----------~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         132 PFDGVISRA----------------FASL-----------NDMVSW-----------CHHLPGEQGRFYALK  165 (207)
T ss_dssp             CEEEEECSC----------------SSSH-----------HHHHHH-----------HTTSEEEEEEEEEEE
T ss_pred             ccceehhhh----------------hcCH-----------HHHHHH-----------HHHhcCCCcEEEEEC
Confidence            799998622                1122           344555           889999999988764

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.37  E-value=3.7e-07  Score=83.08  Aligned_cols=85  Identities=9%  Similarity=0.109  Sum_probs=69.1

Q ss_pred             HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchh
Q psy17793         75 ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQI  154 (397)
Q Consensus        75 ~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~  154 (397)
                      .-++..++++++++||++|+|+|..|..|+..   ..+|+|+|+|+..++.++++..  +.+|++++.+|+.++.     
T Consensus        11 ~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~--~~~n~~i~~~D~l~~~-----   80 (235)
T d1qama_          11 DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQFK-----   80 (235)
T ss_dssp             HHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGGCC-----
T ss_pred             HHHHHhcCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhh--cccchhhhhhhhhhcc-----
Confidence            34566778899999999999999999999985   4689999999999999988654  3468999999998873     


Q ss_pred             hHHHhhhcccCccEEEEcCCC
Q psy17793        155 DIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       155 d~~~~~~~~~~fD~Il~DpPC  175 (397)
                            +.......|+.|-|+
T Consensus        81 ------~~~~~~~~vv~NLPY   95 (235)
T d1qama_          81 ------FPKNQSYKIFGNIPY   95 (235)
T ss_dssp             ------CCSSCCCEEEEECCG
T ss_pred             ------ccccccceeeeeehh
Confidence                  222344578899984

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.34  E-value=3.8e-07  Score=83.62  Aligned_cols=88  Identities=14%  Similarity=0.087  Sum_probs=70.8

Q ss_pred             HHHHhccCCCCC--CeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC---------CcEEEEEc
Q psy17793         75 ILAGHYLDVQPG--QKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL---------SSIQTHVY  143 (397)
Q Consensus        75 ~l~~~~L~~~~g--~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~---------~~v~~~~~  143 (397)
                      ..++.++..+.+  .+|||++||.|.-+..+|.+   +.+|+++|.++.....++.+++++..         .+++++++
T Consensus        76 ~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~  152 (250)
T d2oyra1          76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred             hHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecC
Confidence            345556665554  48999999999999999986   46899999999999999999887642         36999999


Q ss_pred             ccccccccchhhHHHhhhcccCccEEEEcCCC
Q psy17793        144 DSTRINTSSQIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                      |+..+...          ....||+|.+||+.
T Consensus       153 Ds~~~L~~----------~~~~~DvIYlDPMF  174 (250)
T d2oyra1         153 SSLTALTD----------ITPRPQVVYLDPMF  174 (250)
T ss_dssp             CHHHHSTT----------CSSCCSEEEECCCC
T ss_pred             cHHHHHhc----------cCCCCCEEEECCCC
Confidence            99887532          24579999999984

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.29  E-value=1.7e-06  Score=81.84  Aligned_cols=114  Identities=13%  Similarity=0.160  Sum_probs=80.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEEcccccccccchhhHHH
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-----LSSIQTHVYDSTRINTSSQIDIER  158 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~d~~~  158 (397)
                      ...++||.+|.|.|+.+..++.. .+..+|+++|+++..++.+++.+...+     -++++++.+|+..+...       
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~-------  147 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-------  147 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-------
T ss_pred             CCcceEEEeCCCchHHHHHHHhc-CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh-------
Confidence            34568999999999988777664 345699999999999999999876542     13599999999987522       


Q ss_pred             hhhcccCccEEEEcCCC-CCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        159 MKLQKESFDRILLDAPC-SGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpPC-Sg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                         ...+||+|++|++= .+.+. |           ...+     ..++.++.           +.+.|+|||.++.-+
T Consensus       148 ---~~~~yDvIi~D~~dp~~~~~-~-----------~~~L-----~t~eF~~~-----------~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         148 ---TEERYDVVIIDLTDPVGEDN-P-----------ARLL-----YTVEFYRL-----------VKAHLNPGGVMGMQT  195 (312)
T ss_dssp             ---CCCCEEEEEEECCCCBSTTC-G-----------GGGG-----SSHHHHHH-----------HHHTEEEEEEEEEEE
T ss_pred             ---cCCcccEEEEeCCCcccccc-h-----------hhhh-----hhHHHHHH-----------HHHhcCCCceEEEec
Confidence               34689999999851 11000 0           0001     01455556           788999999998754

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.27  E-value=1e-06  Score=82.77  Aligned_cols=117  Identities=19%  Similarity=0.200  Sum_probs=81.7

Q ss_pred             cCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEEcccccccccchhhH
Q psy17793         81 LDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ----LSSIQTHVYDSTRINTSSQIDI  156 (397)
Q Consensus        81 L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g----~~~v~~~~~D~~~~~~~~~~d~  156 (397)
                      +.+. .++||-+|.|.|+.+..++..- +..+|+++|+|+..++.+++.+....    -++++++..|+..+...     
T Consensus        86 ~~~~-pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-----  158 (295)
T d1inla_          86 LHPN-PKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK-----  158 (295)
T ss_dssp             HSSS-CCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG-----
T ss_pred             hCCC-CceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhc-----
Confidence            3444 4699999999999887776642 35689999999999999998775542    24699999999988633     


Q ss_pred             HHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        157 ERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       157 ~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                           ..++||+|++|++....+..             ..   +  ..++.++.           +.+.|+|||.++.-+
T Consensus       159 -----~~~~yDvIi~D~~dp~~~~~-------------~~---L--~t~efy~~-----------~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         159 -----FKNEFDVIIIDSTDPTAGQG-------------GH---L--FTEEFYQA-----------CYDALKEDGVFSAET  204 (295)
T ss_dssp             -----CSSCEEEEEEEC--------------------------C--CSHHHHHH-----------HHHHEEEEEEEEEEC
T ss_pred             -----CCCCCCEEEEcCCCCCcCch-------------hh---h--ccHHHHHH-----------HHhhcCCCcEEEEec
Confidence                 34689999999873211100             00   0  12556666           888999999998864


Q ss_pred             cC
Q psy17793        237 CS  238 (397)
Q Consensus       237 CS  238 (397)
                      -|
T Consensus       205 ~s  206 (295)
T d1inla_         205 ED  206 (295)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.3e-06  Score=81.55  Aligned_cols=111  Identities=19%  Similarity=0.256  Sum_probs=79.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEEcccccccccchhhHHHhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ----LSSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g----~~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      ..++||-+|.|.|+.+..+.+. .+..+|+.+|+|+..++.+++-+..+.    =++++++..|++.+...         
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~-~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~---------  147 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ---------  147 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT---------
T ss_pred             CcCeEEEeCCCchHHHHHHHHc-CCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhc---------
Confidence            3468999999999988877654 245699999999999999998775431    24699999999887532         


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                       ..++||+|++|++=      |.     +   ....     -.+++.++.           +.+.|+|||.++.-+
T Consensus       148 -~~~~yDvIi~D~~~------p~-----~---~~~~-----L~t~eF~~~-----------~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         148 -NQDAFDVIITDSSD------PM-----G---PAES-----LFKESYYQL-----------MKTALKEDGVLCCQG  192 (285)
T ss_dssp             -CSSCEEEEEEECC------------------------------CHHHHH-----------HHHHEEEEEEEEEEE
T ss_pred             -CCCCCCEEEEcCCC------CC-----C---cccc-----cccHHHHHH-----------HHHhcCCCCeEEEec
Confidence             34689999999861      10     0   0011     123566666           888999999998864

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.23  E-value=7.9e-07  Score=82.75  Aligned_cols=133  Identities=17%  Similarity=0.178  Sum_probs=88.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh----------CCCcEEEEEcccccccccch
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL----------QLSSIQTHVYDSTRINTSSQ  153 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~----------g~~~v~~~~~D~~~~~~~~~  153 (397)
                      ....+||-+|.|.|+.+..++..  +..+|+++|+|+..++.+++-+...          .-++++++.+|+..+..   
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~---  145 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK---  145 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH---
T ss_pred             CCCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh---
Confidence            44579999999999988777653  4568999999999999998755321          12469999999987742   


Q ss_pred             hhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEE
Q psy17793        154 IDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILV  233 (397)
Q Consensus       154 ~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lv  233 (397)
                              ..++||+|++|++.. .|.             ...+     ...+.++.           +.+.|+|||.++
T Consensus       146 --------~~~~yDvIi~D~~~~-~~~-------------~~~L-----~t~eF~~~-----------~~~~L~~~Gv~v  187 (276)
T d1mjfa_         146 --------NNRGFDVIIADSTDP-VGP-------------AKVL-----FSEEFYRY-----------VYDALNNPGIYV  187 (276)
T ss_dssp             --------HCCCEEEEEEECCCC-C------------------T-----TSHHHHHH-----------HHHHEEEEEEEE
T ss_pred             --------ccCCCCEEEEeCCCC-CCC-------------cccc-----cCHHHHHh-----------hHhhcCCCceEE
Confidence                    246799999999832 111             0111     11455666           788999999987


Q ss_pred             EEecC--CCccccHHHHHHHHHHCCCcE
Q psy17793        234 YCTCS--LSVEENEAVIAWILHRHPEVE  259 (397)
Q Consensus       234 ysTCS--~~~eEnE~vV~~~L~~~~~~~  259 (397)
                      .-+=|  .+++....+.+.+-+.++.+.
T Consensus       188 ~q~~s~~~~~~~~~~~~~tl~~~F~~v~  215 (276)
T d1mjfa_         188 TQAGSVYLFTDELISAYKEMKKVFDRVY  215 (276)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHHCSEEE
T ss_pred             EecCCcchhHHHHHHHHHHHHhhCCeeE
Confidence            64322  233444444555555555333

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.23  E-value=1.3e-06  Score=82.44  Aligned_cols=111  Identities=15%  Similarity=0.195  Sum_probs=78.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEEcccccccccchhhHHHhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ----LSSIQTHVYDSTRINTSSQIDIERMK  160 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g----~~~v~~~~~D~~~~~~~~~~d~~~~~  160 (397)
                      ..++||-+|.|.|+.+..+++. .+..+|+.+|+|+..++.+++-+..+.    -++++++..|+..+...         
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~-~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~---------  175 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKH-ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN---------  175 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTC-TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH---------
T ss_pred             CCCeEEEeCCCchHHHHHHHHc-CCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh---------
Confidence            3468999999999998877663 234689999999999999998765432    14699999999887522         


Q ss_pred             hcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEe
Q psy17793        161 LQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCT  236 (397)
Q Consensus       161 ~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysT  236 (397)
                       ..++||+|++|++-. .|         .    ...+     ..++.++.           +.+.|+|||.++.-+
T Consensus       176 -~~~~yDvII~D~~dp-~~---------~----~~~L-----~t~eFy~~-----------~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         176 -HKNEFDVIITDSSDP-VG---------P----AESL-----FGQSYYEL-----------LRDALKEDGILSSQG  220 (312)
T ss_dssp             -CTTCEEEEEECCC--------------------------------HHHH-----------HHHHEEEEEEEEEEC
T ss_pred             -CCCCCCEEEEcCCCC-CC---------c----chhh-----hhHHHHHH-----------HHhhcCCCcEEEEec
Confidence             356899999998721 00         0    0111     22556666           888999999998763

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.19  E-value=4e-06  Score=76.20  Aligned_cols=134  Identities=24%  Similarity=0.252  Sum_probs=92.2

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHh
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      .+....+.+|+|+|+|.|--++-+|-.+ +..+|+-+|.+..++.-+++-.+++|++|+.+++..+..+...        
T Consensus        65 ~~~~~~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~--------  135 (239)
T d1xdza_          65 YVDFNQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR--------  135 (239)
T ss_dssp             TSCGGGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC--------
T ss_pred             hhcccCCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhcccc--------
Confidence            3333456799999999999999888765 5679999999999999999999999999999988877654311        


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                      .-..++||+|++=|                +..+           ..++.-           +..++++||++++--=. 
T Consensus       136 ~~~~~~~D~v~sRA----------------va~l-----------~~ll~~-----------~~~~l~~~g~~i~~KG~-  176 (239)
T d1xdza_         136 KDVRESYDIVTARA----------------VARL-----------SVLSEL-----------CLPLVKKNGLFVALKAA-  176 (239)
T ss_dssp             TTTTTCEEEEEEEC----------------CSCH-----------HHHHHH-----------HGGGEEEEEEEEEEECC-
T ss_pred             ccccccceEEEEhh----------------hhCH-----------HHHHHH-----------HhhhcccCCEEEEECCC-
Confidence            01246799999722                1122           344555           88999999998775322 


Q ss_pred             CccccHHHHHHHHHHCCCcEEEe
Q psy17793        240 SVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       240 ~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                      ..+|.-+..+..+... ++++..
T Consensus       177 ~~~~El~~a~~~~~~~-~~~~~~  198 (239)
T d1xdza_         177 SAEEELNAGKKAITTL-GGELEN  198 (239)
T ss_dssp             -CHHHHHHHHHHHHHT-TEEEEE
T ss_pred             ChHHHHHHHHHHHHHc-CCEEEE
Confidence            2222222334444444 355443

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.17  E-value=5.6e-06  Score=76.75  Aligned_cols=127  Identities=16%  Similarity=0.122  Sum_probs=86.8

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-CC---CcEEEEEcccccccccchhhHHHh
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKL-QL---SSIQTHVYDSTRINTSSQIDIERM  159 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~-g~---~~v~~~~~D~~~~~~~~~~d~~~~  159 (397)
                      ...++||-+|.|.|+.+..++.. .+..+|+.+|+|+..++.+++.+..+ +.   ++++++..|+..+...        
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~-~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~--------  144 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKH-PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK--------  144 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTC-TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT--------
T ss_pred             CCcceEEecCCCCcHHHHHHHhc-CCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhh--------
Confidence            34569999999999998877664 24569999999999999999887543 22   3599999999887532        


Q ss_pred             hhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        160 KLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       160 ~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                        ...+||+|++|++... |....   -.+               ++..+.           +.+.|+|||.++.-+  -
T Consensus       145 --~~~~yDvIi~D~~~p~-~~~~~---L~t---------------~eFy~~-----------~~~~L~~~Gv~v~q~--~  190 (274)
T d1iy9a_         145 --SENQYDVIMVDSTEPV-GPAVN---LFT---------------KGFYAG-----------IAKALKEDGIFVAQT--D  190 (274)
T ss_dssp             --CCSCEEEEEESCSSCC-SCCCC---CST---------------THHHHH-----------HHHHEEEEEEEEEEC--C
T ss_pred             --cCCCCCEEEEcCCCCC-Ccchh---hcc---------------HHHHHH-----------HHhhcCCCceEEEec--C
Confidence              3468999999998421 11000   011               344555           777899999998753  2


Q ss_pred             CccccHHHHHHHHH
Q psy17793        240 SVEENEAVIAWILH  253 (397)
Q Consensus       240 ~~eEnE~vV~~~L~  253 (397)
                      ++.-+.+.+..+++
T Consensus       191 s~~~~~~~~~~i~~  204 (274)
T d1iy9a_         191 NPWFTPELITNVQR  204 (274)
T ss_dssp             CTTTCHHHHHHHHH
T ss_pred             CccccHHHHHHHHH
Confidence            33334444444433

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.10  E-value=3.2e-06  Score=79.05  Aligned_cols=125  Identities=17%  Similarity=0.200  Sum_probs=86.0

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEEcccccccccchhhHHHhhh
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ----LSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g----~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      -++||=+|.|.|+.+..++.. .+-.+|+++|+|+..++.+++-+....    -++++++..|+......         .
T Consensus        81 pk~VLiiGgG~G~~~r~~l~~-~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~---------~  150 (290)
T d1xj5a_          81 PKKVLVIGGGDGGVLREVARH-ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN---------A  150 (290)
T ss_dssp             CCEEEEETCSSSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT---------S
T ss_pred             CcceEEecCCchHHHHHHHhc-ccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhh---------c
Confidence            468999999999988877663 234689999999999999998764432    24699999999877522         2


Q ss_pred             cccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCc
Q psy17793        162 QKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSV  241 (397)
Q Consensus       162 ~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~  241 (397)
                      ..++||+|++|++-. .|.             ...+     ..++.++.           +.+.|+|||.++.-+-|  +
T Consensus       151 ~~~~yDvIi~D~~dp-~~~-------------~~~L-----~t~eF~~~-----------~~~~L~~~Gi~v~q~~s--~  198 (290)
T d1xj5a_         151 AEGSYDAVIVDSSDP-IGP-------------AKEL-----FEKPFFQS-----------VARALRPGGVVCTQAES--L  198 (290)
T ss_dssp             CTTCEEEEEECCCCT-TSG-------------GGGG-----GSHHHHHH-----------HHHHEEEEEEEEEECCC--T
T ss_pred             cccCccEEEEcCCCC-CCc-------------chhh-----CCHHHHHH-----------HHHhcCCCcEEEEecCC--c
Confidence            345899999998731 110             0111     12455666           78899999999987544  3


Q ss_pred             cccHHHHHHHH
Q psy17793        242 EENEAVIAWIL  252 (397)
Q Consensus       242 eEnE~vV~~~L  252 (397)
                      ..+.+.+..++
T Consensus       199 ~~~~~~~~~i~  209 (290)
T d1xj5a_         199 WLHMDIIEDIV  209 (290)
T ss_dssp             TTCHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33444443333

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=5.8e-06  Score=76.80  Aligned_cols=84  Identities=18%  Similarity=0.228  Sum_probs=69.9

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchh
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQI  154 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~  154 (397)
                      -++..+++.+++.||++|+|+|..|..|+..   +.+|+|+|+|+..++.+++.+..... .+++++.+|+.+..     
T Consensus        12 kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~-----   83 (278)
T d1zq9a1          12 SIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD-----   83 (278)
T ss_dssp             HHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC-----
T ss_pred             HHHHHhCCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh-----
Confidence            3456678889999999999999999999985   35899999999999999998876543 57999999998763     


Q ss_pred             hHHHhhhcccCccEEEEcCCC
Q psy17793        155 DIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       155 d~~~~~~~~~~fD~Il~DpPC  175 (397)
                              ...++.|+.|.|+
T Consensus        84 --------~~~~~~vV~NLPY   96 (278)
T d1zq9a1          84 --------LPFFDTCVANLPY   96 (278)
T ss_dssp             --------CCCCSEEEEECCG
T ss_pred             --------hhhhhhhhcchHH
Confidence                    1346789999994

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.00  E-value=2.7e-07  Score=84.56  Aligned_cols=95  Identities=13%  Similarity=0.140  Sum_probs=74.1

Q ss_pred             CcEEEechhH-HHHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEc
Q psy17793         65 SMGILQNLPS-ILAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVY  143 (397)
Q Consensus        65 g~~~~Qd~~S-~l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~  143 (397)
                      |.-++.|..- .-++..+++.+++.|||+|+|+|..|..|+..   +.+|+|+|+|+..++.++++..  +..|++++++
T Consensus         8 GQnFL~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~   82 (245)
T d1yuba_           8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQ   82 (245)
T ss_dssp             CCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCS
T ss_pred             CCcccCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhh--hccchhhhhh
Confidence            4444555442 34567788899999999999999999999985   4689999999999888876554  2358999999


Q ss_pred             ccccccccchhhHHHhhhcccCccEEEEcCCC
Q psy17793        144 DSTRINTSSQIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       144 D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                      |+.++.           +....++.|+.+-|+
T Consensus        83 D~l~~~-----------~~~~~~~~vv~NLPY  103 (245)
T d1yuba_          83 DILQFQ-----------FPNKQRYKIVGNIPY  103 (245)
T ss_dssp             CCTTTT-----------CCCSSEEEEEEECCS
T ss_pred             hhhccc-----------cccceeeeEeeeeeh
Confidence            998763           344567889999985

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.88  E-value=5.3e-06  Score=75.40  Aligned_cols=133  Identities=14%  Similarity=0.082  Sum_probs=70.7

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .+++.+|+|+|||||+++..++.+. ....|.|+++--...+ .....+.++.+-++....+....            ..
T Consensus        64 ~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e-~P~~~~~~~~ni~~~~~~~dv~~------------l~  129 (257)
T d2p41a1          64 VTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHE-EPIPMSTYGWNLVRLQSGVDVFF------------IP  129 (257)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSC-CCCCCCSTTGGGEEEECSCCTTT------------SC
T ss_pred             ccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCcccc-CCccccccccccccchhhhhHHh------------cC
Confidence            5778899999999999999888763 3356777777211000 00001111211233333222111            24


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCCCcc
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSLSVE  242 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~~~e  242 (397)
                      .+.+|.|+||--=| +|              ...++..-.  .++|+-           |.++|+|||.++.-.-.-+.+
T Consensus       130 ~~~~D~vlcDm~es-s~--------------~~~vd~~Rt--l~vLel-----------a~~wLk~gg~FvvKVl~py~~  181 (257)
T d2p41a1         130 PERCDTLLCDIGES-SP--------------NPTVEAGRT--LRVLNL-----------VENWLSNNTQFCVKVLNPYMS  181 (257)
T ss_dssp             CCCCSEEEECCCCC-CS--------------SHHHHHHHH--HHHHHH-----------HHHHCCTTCEEEEEESCCCSH
T ss_pred             CCcCCEEEeeCCCC-CC--------------CchhhhhhH--HHHHHH-----------HHHHcccCCEEEEEECCCCCh
Confidence            57899999996211 11              111111111  355666           888999999887653222223


Q ss_pred             ccHHHHHHHHHHCCC
Q psy17793        243 ENEAVIAWILHRHPE  257 (397)
Q Consensus       243 EnE~vV~~~L~~~~~  257 (397)
                      |--+.++.+-.+|.+
T Consensus       182 ~v~e~le~lq~~fgg  196 (257)
T d2p41a1         182 SVIEKMEALQRKHGG  196 (257)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhCC
Confidence            333344555556643

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=7.1e-06  Score=75.12  Aligned_cols=91  Identities=11%  Similarity=0.049  Sum_probs=67.4

Q ss_pred             HHHhccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh
Q psy17793         76 LAGHYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID  155 (397)
Q Consensus        76 l~~~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d  155 (397)
                      -++..+++.+++.||++|+|+|..|..|+..   ..+|+|+|+|+..++.++++...  -++++++.+|+.++...    
T Consensus        12 ~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~--~~~~~ii~~D~l~~~~~----   82 (252)
T d1qyra_          12 SIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTFNFG----   82 (252)
T ss_dssp             HHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGCCHH----
T ss_pred             HHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhhh--ccchhHHhhhhhhhccc----
Confidence            3456778889999999999999999999874   46899999999999999874332  25799999999876311    


Q ss_pred             HHHhhhcccCccEEEEcCCCCC
Q psy17793        156 IERMKLQKESFDRILLDAPCSG  177 (397)
Q Consensus       156 ~~~~~~~~~~fD~Il~DpPCSg  177 (397)
                       ...... +.--.|+.|.|++-
T Consensus        83 -~~~~~~-~~~~~vvgNlPY~I  102 (252)
T d1qyra_          83 -ELAEKM-GQPLRVFGNLPYNI  102 (252)
T ss_dssp             -HHHHHH-TSCEEEEEECCTTT
T ss_pred             -cccccc-CCCeEEEecchHHH
Confidence             001111 22347889999643

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.67  E-value=4.5e-05  Score=66.60  Aligned_cols=43  Identities=19%  Similarity=0.154  Sum_probs=31.6

Q ss_pred             CCeEEEEcCCCChHHHHHH----HHcC---CCcEEEEEeCCHHHHHHHHH
Q psy17793         86 GQKVLDMCAAPGNKLTHIA----LLMN---DTGTLIALDKSKPRVTKLEE  128 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA----~~~~---~~~~V~avD~s~~rl~~l~~  128 (397)
                      .-+||++|||+|-=.-.+|    +...   ...+|+|.|+|+..++.+++
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            3499999999998543333    3222   23579999999999998873

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.47  E-value=0.00032  Score=63.39  Aligned_cols=100  Identities=18%  Similarity=0.135  Sum_probs=73.2

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      ....+|||+|+|+|..+..+++.. +..+++.+|. +..+       +..+ ..+|++..+|+.+.            .+
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi-------~~~~~~~ri~~~~gd~~~~------------~p  138 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVI-------ENAPPLSGIEHVGGDMFAS------------VP  138 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHH-------TTCCCCTTEEEEECCTTTC------------CC
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecc-hhhh-------hccCCCCCeEEecCCcccc------------cc
Confidence            455799999999999999999985 5679999997 4333       2222 35699999998653            12


Q ss_pred             ccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecC
Q psy17793        163 KESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCS  238 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS  238 (397)
                        ..|+|++          ..+...|+    .+..       .++|++           +.+.|+|||+|+.....
T Consensus       139 --~~D~~~l----------~~vLh~~~----de~~-------~~iL~~-----------~~~aL~pgg~llI~e~v  180 (244)
T d1fp1d2         139 --QGDAMIL----------KAVCHNWS----DEKC-------IEFLSN-----------CHKALSPNGKVIIVEFI  180 (244)
T ss_dssp             --CEEEEEE----------ESSGGGSC----HHHH-------HHHHHH-----------HHHHEEEEEEEEEEEEE
T ss_pred             --cceEEEE----------ehhhhhCC----HHHH-------HHHHHH-----------HHHHcCCCcEEEEEEEE
Confidence              3498887          24455565    3333       678888           99999999999887543

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.29  E-value=0.0002  Score=64.31  Aligned_cols=98  Identities=16%  Similarity=0.205  Sum_probs=64.3

Q ss_pred             CcEEEechhHHHHHh-ccCCCCCCeEEEEcCCCChHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q psy17793         65 SMGILQNLPSILAGH-YLDVQPGQKVLDMCAAPGNKLTHIALLM---NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQT  140 (397)
Q Consensus        65 g~~~~Qd~~S~l~~~-~L~~~~g~~VLDlcagpG~kt~~lA~~~---~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~  140 (397)
                      |.=++|.+.-+++-+ ++.-.....||++|++.|+-+..+|..+   +..++|+++|+++.+....     ....++|++
T Consensus        59 G~p~~k~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~~~~~I~~  133 (232)
T d2bm8a1          59 GLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----ASDMENITL  133 (232)
T ss_dssp             TEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GGGCTTEEE
T ss_pred             ceecccCHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hccccceee
Confidence            555677766543322 2321223589999999999888887654   4678999999987654322     122467999


Q ss_pred             EEcccccccccchhhHHHhhhcccCccEEEEcCC
Q psy17793        141 HVYDSTRINTSSQIDIERMKLQKESFDRILLDAP  174 (397)
Q Consensus       141 ~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpP  174 (397)
                      +.+|.......       ..+....+|.|++|.-
T Consensus       134 i~gDs~~~~~~-------~~l~~~~~dlIfID~~  160 (232)
T d2bm8a1         134 HQGDCSDLTTF-------EHLREMAHPLIFIDNA  160 (232)
T ss_dssp             EECCSSCSGGG-------GGGSSSCSSEEEEESS
T ss_pred             eecccccHHHH-------HHHHhcCCCEEEEcCC
Confidence            99998754211       1133456899999863

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.21  E-value=0.00062  Score=58.01  Aligned_cols=54  Identities=22%  Similarity=0.230  Sum_probs=41.2

Q ss_pred             hccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         79 HYLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...++++|++||-.|||+ |..++++|..++ ..+|+++|.++++++.++    ++|.+.
T Consensus        22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~   76 (182)
T d1vj0a2          22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAE----EIGADL   76 (182)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred             HHhCCCCCCEEEEECCCccchhheecccccc-cccccccccccccccccc----cccceE
Confidence            344678999999999875 566777787753 348999999999998765    468653

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.18  E-value=0.00014  Score=66.14  Aligned_cols=85  Identities=16%  Similarity=0.111  Sum_probs=61.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCC---------------------------------------CcEEEEEeCCHHHHHH
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMND---------------------------------------TGTLIALDKSKPRVTK  125 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~---------------------------------------~~~V~avD~s~~rl~~  125 (397)
                      .+..++|-|||+|.+.+..|.+..+                                       ...+++.|+++.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            3457999999999998876664211                                       1257899999999988


Q ss_pred             H---HHHHHHhCCCc-EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCC
Q psy17793        126 L---EETIKKLQLSS-IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPC  175 (397)
Q Consensus       126 l---~~n~~~~g~~~-v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPC  175 (397)
                      +   ++|+++.|+.. |.+...|+++....     . ........++|++|||+
T Consensus       130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~-----~-~~~~~~~~GlIVtNPPY  177 (249)
T d1o9ga_         130 ARRLRERLTAEGGALPCAIRTADVFDPRAL-----S-AVLAGSAPDVVLTDLPY  177 (249)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGH-----H-HHHTTCCCSEEEEECCG
T ss_pred             HHHHHHHHHHcCCCceeeeeecchhccCcc-----h-hccCCCCCCEEEeCCCc
Confidence            8   57999999875 88999998765211     0 01123457999999995

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0012  Score=55.43  Aligned_cols=54  Identities=26%  Similarity=0.266  Sum_probs=40.4

Q ss_pred             hccCCCCCCeEEEEcCCCChHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLT-HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~-~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...++++|+.||=+|+|+.|... ++|..+ +..+|+++|.++.+++.++    ++|.+.
T Consensus        20 ~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~~~rl~~a~----~~Ga~~   74 (171)
T d1pl8a2          20 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAK----EIGADL   74 (171)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred             HHhCCCCCCEEEEECCCccHHHHHHHHHHc-CCceEEeccCCHHHHHHHH----HhCCcc
Confidence            34578999999999998866544 444443 4558999999999998764    568764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.07  E-value=0.00099  Score=56.65  Aligned_cols=56  Identities=16%  Similarity=0.131  Sum_probs=43.4

Q ss_pred             HHhccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         77 AGHYLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ++...++++|+.||=+|||+ |..++++|..+ +..+|+++|.+++|++.++    ++|.+.
T Consensus        19 a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~-Ga~~Vi~~d~~~~r~~~a~----~lGa~~   75 (174)
T d1jqba2          19 GAELADIEMGSSVVVIGIGAVGLMGIAGAKLR-GAGRIIGVGSRPICVEAAK----FYGATD   75 (174)
T ss_dssp             HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTT-TCSCEEEECCCHHHHHHHH----HHTCSE
T ss_pred             HHHHhCCCCCCEEEEEcCCcchhhhhhhhhcc-cccccccccchhhhHHHHH----hhCccc
Confidence            34556789999999999887 66777777765 3457999999999988875    578653

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=97.00  E-value=0.0027  Score=58.49  Aligned_cols=76  Identities=17%  Similarity=0.201  Sum_probs=56.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKE  164 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~  164 (397)
                      .+.+|||++||.||.+.-+-..  +--.|.|+|+++.+++..+.|..     +  ....|.+++...          ...
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~-----~--~~~~Di~~~~~~----------~~~   70 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFG-----E--KPEGDITQVNEK----------TIP   70 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHS-----C--CCBSCGGGSCGG----------GSC
T ss_pred             CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCC-----C--CCcCchhcCchh----------hcc
Confidence            4679999999999999766442  33457889999999999988852     1  124777766321          224


Q ss_pred             CccEEEEcCCCCCCC
Q psy17793        165 SFDRILLDAPCSGFG  179 (397)
Q Consensus       165 ~fD~Il~DpPCSg~G  179 (397)
                      .+|+|+.-|||-+..
T Consensus        71 ~~Dll~ggpPCq~fS   85 (327)
T d2c7pa1          71 DHDILCAGFPCQAFS   85 (327)
T ss_dssp             CCSEEEEECCCTTTC
T ss_pred             eeeeeecccccchhh
Confidence            689999999996653

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.95  E-value=0.0021  Score=57.76  Aligned_cols=96  Identities=17%  Similarity=0.163  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL-SSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~-~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      ...+|||+|+|+|..+..+++.. +..+++..|. +..+       +..+. .+|+++.+|+.+.             . 
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi-------~~~~~~~rv~~~~gD~f~~-------------~-  136 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVV-------ENLSGSNNLTYVGGDMFTS-------------I-  136 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHH-------TTCCCBTTEEEEECCTTTC-------------C-
T ss_pred             CceEEEEecCCccHHHHHHHHhC-CCCeEEEecC-HHHH-------HhCcccCceEEEecCcccC-------------C-
Confidence            34689999999999999999985 5679999998 4333       23333 5699999998653             1 


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCC---cEEEEE
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKD---GILVYC  235 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpg---G~lvys  235 (397)
                      ..+|++++          ..+...|+    .+..       .++|++           +.+.|+||   |+++..
T Consensus       137 p~aD~~~l----------~~vLHdw~----d~~~-------~~iL~~-----------~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         137 PNADAVLL----------KYILHNWT----DKDC-------LRILKK-----------CKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             CCCSEEEE----------ESCGGGSC----HHHH-------HHHHHH-----------HHHHHSGGGCCCEEEEE
T ss_pred             CCCcEEEE----------EeecccCC----hHHH-------HHHHHH-----------HHHHcCcccCCcEEEEE
Confidence            24799987          34555566    3333       678888           99999998   666655

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.92  E-value=0.0029  Score=53.36  Aligned_cols=104  Identities=15%  Similarity=0.162  Sum_probs=66.6

Q ss_pred             hccCCCCCCeEEEEcCCCChH-HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHH
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNK-LTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIE  157 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~k-t~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~  157 (397)
                      ..+++++|++||=+|||+-+. ++++|..+ +...|++.|.++.+++.+++    +|...+  +..+..+..      ..
T Consensus        22 ~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~-g~~~v~~~~~~~~k~~~a~~----~Ga~~~--i~~~~~~~~------~~   88 (174)
T d1f8fa2          22 NALKVTPASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQ----LGATHV--INSKTQDPV------AA   88 (174)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHH----HTCSEE--EETTTSCHH------HH
T ss_pred             HhhCCCCCCEEEEeCCCHHHhhhhhccccc-ccceeeeeccHHHHHHHHHH----cCCeEE--EeCCCcCHH------HH
Confidence            456789999999998876543 44555555 45588999999999888754    687542  222221111      11


Q ss_pred             HhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEE
Q psy17793        158 RMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       158 ~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvys  235 (397)
                      .....++.||+|+-   |+|.                          ...++.           +.++++++|++++.
T Consensus        89 i~~~t~gg~D~vid---~~G~--------------------------~~~~~~-----------~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          89 IKEITDGGVNFALE---STGS--------------------------PEILKQ-----------GVDALGILGKIAVV  126 (174)
T ss_dssp             HHHHTTSCEEEEEE---CSCC--------------------------HHHHHH-----------HHHTEEEEEEEEEC
T ss_pred             HHHHcCCCCcEEEE---cCCc--------------------------HHHHHH-----------HHhcccCceEEEEE
Confidence            11233457999986   4442                          122333           78899999999875

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.90  E-value=0.0024  Score=54.28  Aligned_cols=54  Identities=19%  Similarity=0.188  Sum_probs=42.5

Q ss_pred             hccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         79 HYLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...++++|+.||=+|||+ |..++++|..+ +...|++.|.++.|++.+    +++|.+.
T Consensus        22 ~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~-Ga~~Vi~~d~~~~r~~~a----~~~Ga~~   76 (174)
T d1e3ia2          22 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKA----KALGATD   76 (174)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHH----HHTTCSE
T ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHh-CCceeeeeccchHHHHHH----HHhCCCc
Confidence            456689999999999998 66677777765 456899999999998665    4578764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.87  E-value=0.0035  Score=54.12  Aligned_cols=55  Identities=20%  Similarity=0.211  Sum_probs=42.7

Q ss_pred             HHhccCCCCCCeEEEEcCCCCh-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         77 AGHYLDVQPGQKVLDMCAAPGN-KLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagpG~-kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      .+...++++|++||-+|||+.| .++++|..+ +..+|+++|.++.|++.++    ++|.+
T Consensus        17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~----~~Ga~   72 (195)
T d1kola2          17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAK----AQGFE   72 (195)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTCE
T ss_pred             HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhh----hcccc
Confidence            3455688999999999999944 566666665 5679999999999998765    55764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.0014  Score=54.96  Aligned_cols=52  Identities=19%  Similarity=0.136  Sum_probs=39.8

Q ss_pred             ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...+++|++||-+|+|+ |..+.++|..+  +.+|+++|.++++++.++    ++|.+.
T Consensus        22 ~~~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~----~lGa~~   74 (168)
T d1piwa2          22 RNGCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAM----KMGADH   74 (168)
T ss_dssp             HTTCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHH----HHTCSE
T ss_pred             HhCcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhh----ccCCcE
Confidence            35788999999999873 55566676665  368999999999987764    578764

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00098  Score=61.63  Aligned_cols=79  Identities=19%  Similarity=0.259  Sum_probs=52.3

Q ss_pred             CeEEEEcCCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccC
Q psy17793         87 QKVLDMCAAPGNKLTHIALLMNDTG-TLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKES  165 (397)
Q Consensus        87 ~~VLDlcagpG~kt~~lA~~~~~~~-~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~  165 (397)
                      .+|+|++||.||.+.-+-.. +-.. .|.|+|+++.+++..+.|.     .+..+++.|...+...        .+....
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~--------~~~~~~   68 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLE--------EFDRLS   68 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHH--------HHHHHC
T ss_pred             CEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHh--------HcCCCC
Confidence            37999999999998765442 2122 3789999999999888763     3445667787765311        122347


Q ss_pred             ccEEEEcCCCCCCC
Q psy17793        166 FDRILLDAPCSGFG  179 (397)
Q Consensus       166 fD~Il~DpPCSg~G  179 (397)
                      +|+++.-|||.+..
T Consensus        69 ~Dll~ggpPCq~fS   82 (343)
T d1g55a_          69 FDMILMSPPCQPFT   82 (343)
T ss_dssp             CSEEEECCC-----
T ss_pred             ccEEEeeccccccc
Confidence            99999999997753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.76  E-value=0.0051  Score=51.24  Aligned_cols=52  Identities=21%  Similarity=0.162  Sum_probs=39.0

Q ss_pred             ccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...+++|++||-+|+|+ |..++++|..+  +.+|+++|.++.+++.+++    +|...
T Consensus        21 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~----~ga~~   73 (170)
T d1e3ja2          21 RAGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN----CGADV   73 (170)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSE
T ss_pred             HhCCCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHH----cCCcE
Confidence            45689999999998875 44455666654  3589999999999887765    57643

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.73  E-value=0.0026  Score=58.04  Aligned_cols=74  Identities=15%  Similarity=0.191  Sum_probs=55.4

Q ss_pred             eEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCcc
Q psy17793         88 KVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFD  167 (397)
Q Consensus        88 ~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD  167 (397)
                      +|||++||.||.+.-+-..  +--.+.|+|+++.+.+..+.|.     .+ .+...|.+++...          .-..+|
T Consensus         2 k~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~-----~~-~~~~~Di~~~~~~----------~~~~~d   63 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH-----SA-KLIKGDISKISSD----------EFPKCD   63 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHC-----CS-EEEESCTTTSCGG----------GSCCCS
T ss_pred             eEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC-----CC-CCccCChhhCCHh----------Hccccc
Confidence            6999999999998765543  3345779999999998888773     22 4567888876421          124689


Q ss_pred             EEEEcCCCCCCC
Q psy17793        168 RILLDAPCSGFG  179 (397)
Q Consensus       168 ~Il~DpPCSg~G  179 (397)
                      +++.=|||.+..
T Consensus        64 ll~~g~PCq~fS   75 (324)
T d1dcta_          64 GIIGGPPCQSWS   75 (324)
T ss_dssp             EEEECCCCTTTS
T ss_pred             EEeecccccccc
Confidence            999999997754

>d2apoa1 b.122.1.1 (A:247-331) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Pseudouridine synthase II TruB, C-terminal domain
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.53  E-value=0.00071  Score=51.05  Aligned_cols=34  Identities=26%  Similarity=0.507  Sum_probs=30.5

Q ss_pred             CCeEEEechhhhhhhhcccceecccccccCCCCC
Q psy17793        344 HPVQIIVDQPCALAVLRGADVFAPGVLAMPLGKN  377 (397)
Q Consensus       344 ~~~~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~  377 (397)
                      |.+.|.||..+..|+++||++|+|||++++.++.
T Consensus         1 hlp~v~Vd~~Av~ai~~Ga~L~~pGV~~~~~~~~   34 (85)
T d2apoa1           1 HLKKVVVKDSAVDAICHGADVYVRGIAKLSKGIG   34 (85)
T ss_dssp             TSEEEEECHHHHHHHHTTCCEEGGGEEEEETTCC
T ss_pred             CCCEEEECccHHHHHHcCCCccccEEEEEcCCCc
Confidence            4567999999999999999999999999988764

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.52  E-value=0.0067  Score=54.04  Aligned_cols=100  Identities=16%  Similarity=0.171  Sum_probs=68.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ-LSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g-~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      ...+|||+|+|+|..+..+++.. +..+++..|.-.. ++       ... ..++++..+|+....            + 
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v-i~-------~~~~~~r~~~~~~d~~~~~------------P-  138 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPHV-IE-------DAPSYPGVEHVGGDMFVSI------------P-  138 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTTT-TT-------TCCCCTTEEEEECCTTTCC------------C-
T ss_pred             CCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHHh-hh-------hcccCCceEEecccccccC------------C-
Confidence            35689999999999999999985 5679999998542 22       112 246888888886431            2 


Q ss_pred             cCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccccccccccccCCcEEEEEecCC
Q psy17793        164 ESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLFDWQGIPLLKKDGILVYCTCSL  239 (397)
Q Consensus       164 ~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~~~~a~~lLkpgG~lvysTCS~  239 (397)
                       ..|.+++          ..+...|+    .+..       .++|++           +.+.|+|||+++....-+
T Consensus       139 -~ad~~~l----------~~vlh~~~----d~~~-------~~iL~~-----------~~~al~pgg~~li~d~~~  181 (243)
T d1kyza2         139 -KADAVFM----------KWICHDWS----DEHC-------LKFLKN-----------CYEALPDNGKVIVAECIL  181 (243)
T ss_dssp             -CCSCEEC----------SSSSTTSC----HHHH-------HHHHHH-----------HHHHCCSSSCEEEEECEE
T ss_pred             -CcceEEE----------EEEeecCC----HHHH-------HHHHHH-----------HHHhcCCCceEEEEEEEe
Confidence             2354543          12344454    2332       667888           999999999998875543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.11  E-value=0.02  Score=47.46  Aligned_cols=54  Identities=17%  Similarity=0.154  Sum_probs=39.3

Q ss_pred             hccCCCCCCeEEEEcC-CCC-hHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         79 HYLDVQPGQKVLDMCA-APG-NKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        79 ~~L~~~~g~~VLDlca-gpG-~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...++++|++||=.|+ |+. ..+++++..+ +..+|+++|.++++++.+++    +|.+.
T Consensus        21 ~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~-g~~~V~~~~~~~~~~~~~~~----~Ga~~   76 (170)
T d1jvba2          21 RKASLDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKR----AGADY   76 (170)
T ss_dssp             HHTTCCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHH----HTCSE
T ss_pred             HHhCCCCCCEEEEEeccccceeeeeeccccc-ccccccccccchhhHHHHHH----cCCce
Confidence            3457899999999996 433 3355566654 44689999999999888764    68653

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.014  Score=48.80  Aligned_cols=54  Identities=17%  Similarity=0.096  Sum_probs=39.9

Q ss_pred             hccCCCCCCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q psy17793         79 HYLDVQPGQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI  138 (397)
Q Consensus        79 ~~L~~~~g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v  138 (397)
                      ...++++|++||-.|+  +.|..++++|..+  +.+|++++.++++.+.++    ++|.+.+
T Consensus        22 ~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~----~~Ga~~v   77 (174)
T d1yb5a2          22 HSACVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVL----QNGAHEV   77 (174)
T ss_dssp             TTSCCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTCSEE
T ss_pred             HHhCCCCCCEEEEEecccccccccccccccc--Cccccccccccccccccc----ccCcccc
Confidence            3456889999999986  3456677778775  468999998988876654    5787653

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.08  E-value=0.0042  Score=58.00  Aligned_cols=60  Identities=18%  Similarity=0.066  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRI  148 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~  148 (397)
                      .++.|||+|.|+|..|..+.... ...+|+|+|+|+..++.+++..+   -.+++++.+|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~-~~~~v~~iE~D~~~~~~L~~~~~---~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKY-CPRQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHH-CCSEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHhcc---CCCcEEEeCchhhc
Confidence            46789999999999999998763 33589999999999999987653   25689999999866

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.06  E-value=0.0068  Score=50.76  Aligned_cols=51  Identities=22%  Similarity=0.289  Sum_probs=38.2

Q ss_pred             CCCCCCeEEEEcCCCChHH-HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         82 DVQPGQKVLDMCAAPGNKL-THIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        82 ~~~~g~~VLDlcagpG~kt-~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ..++|+.||=.|+|+.+.. .++|..+ +...|+++|.++++++.++    ++|...
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~-g~~~vv~~~~~~~k~~~~~----~~ga~~   80 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVM-TPATVIALDVKEEKLKLAE----RLGADH   80 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHH-CCCEEEEEESSHHHHHHHH----HTTCSE
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhh-cCcccccccchhHHHHHHh----hcccce
Confidence            3689999999999876655 4566555 4568999999999987766    457653

>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423, C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Hypothetical protein Ta1423, C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.90  E-value=0.0017  Score=48.72  Aligned_cols=31  Identities=32%  Similarity=0.598  Sum_probs=28.4

Q ss_pred             EEEechhhhhhhhcccceecccccccCCCCC
Q psy17793        347 QIIVDQPCALAVLRGADVFAPGVLAMPLGKN  377 (397)
Q Consensus       347 ~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~  377 (397)
                      -|+||..|..++++||++++|||++++..+.
T Consensus         4 ~I~Vd~gA~~~l~~GA~L~~pGV~~~~~~~~   34 (85)
T d1q7ha1           4 IVTVDEGAEPHILNGSDLFAPGIVSMDDSIR   34 (85)
T ss_dssp             EEEECTTTHHHHTTTCCEEGGGEEEECTTCC
T ss_pred             EEEECcCHHHHHHCCCCcCCCccEECCCCCC
Confidence            5899999999999999999999999987653

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.70  E-value=0.02  Score=47.04  Aligned_cols=53  Identities=11%  Similarity=0.020  Sum_probs=38.7

Q ss_pred             ccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...+++|++||=.|+|+-|......... .+.+|+++|.++++++.++    ++|.+.
T Consensus        22 ~~~~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k----~~Ga~~   74 (168)
T d1rjwa2          22 VTGAKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAK----ELGADL   74 (168)
T ss_dssp             HHTCCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHH----HTTCSE
T ss_pred             HhCCCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhh----hcCcce
Confidence            4568899999999998866654333333 3458999999999987664    478754

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.66  E-value=0.0067  Score=53.33  Aligned_cols=46  Identities=20%  Similarity=0.283  Sum_probs=38.1

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKK  132 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~  132 (397)
                      .+|+.|||.+||+|..+. +|..+  +-+-+++|+++.-++.+++++++
T Consensus       211 ~~gd~VlDpF~GSGTT~~-aa~~~--~R~~ig~El~~~y~~~a~~Rl~~  256 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAI-VAKKL--GRNFIGCDMNAEYVNQANFVLNQ  256 (256)
T ss_dssp             CTTCEEEESSCTTCHHHH-HHHHT--TCEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCCCEEEECCCCchHHHH-HHHHc--CCeEEEEeCCHHHHHHHHHHHcC
Confidence            689999999999997664 44443  35799999999999999999863

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.62  E-value=0.027  Score=47.24  Aligned_cols=54  Identities=13%  Similarity=0.073  Sum_probs=41.4

Q ss_pred             hccCCCCCCeEEEEcCCCChHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLT-HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~-~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...++++|++||=.|||+.+... ++|..+ +..+|+++|.+++|++.++    ++|.+.
T Consensus        21 ~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~-G~~~Vi~~d~~~~kl~~a~----~lGa~~   75 (174)
T d1p0fa2          21 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAI----ELGATE   75 (174)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred             HhhCCCCCCEEEEECCCchhHHHHHHHHHc-CCceeeccCChHHHHHHHH----HcCCcE
Confidence            44578999999999998866544 455554 4568999999999998775    578764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.60  E-value=0.036  Score=46.51  Aligned_cols=55  Identities=13%  Similarity=0.120  Sum_probs=40.8

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...++++|+.|+=.|+|+.+..........+..+|+++|.++++++.++    ++|.+.
T Consensus        23 ~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak----~~GA~~   77 (176)
T d1d1ta2          23 KTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM----AVGATE   77 (176)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HHTCSE
T ss_pred             HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHH----hcCCcE
Confidence            3456899999999999886665433333345579999999999998765    468754

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.52  E-value=0.0098  Score=49.25  Aligned_cols=53  Identities=21%  Similarity=0.101  Sum_probs=39.2

Q ss_pred             hccCCCCCCeEEEEcCCCCh-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         79 HYLDVQPGQKVLDMCAAPGN-KLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~-kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...++++|++||=.|+|+=| .++++|..+  +.+|+++|.++.+++.++    ++|.+.
T Consensus        21 ~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~----~~Ga~~   74 (166)
T d1llua2          21 KQTNARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELAR----KLGASL   74 (166)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH----HTTCSE
T ss_pred             HHhCCCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhh----ccCccc
Confidence            34678999999999887643 344556654  368999999999987664    578754

>d2ey4a1 b.122.1.1 (A:253-336) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Pseudouridine synthase II TruB, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.42  E-value=0.0039  Score=46.67  Aligned_cols=32  Identities=25%  Similarity=0.488  Sum_probs=29.0

Q ss_pred             EEEechhhhhhhhcccceecccccccCCCCCC
Q psy17793        347 QIIVDQPCALAVLRGADVFAPGVLAMPLGKNS  378 (397)
Q Consensus       347 ~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~~  378 (397)
                      .|.||..+..|+++|+++|+|||++++.++..
T Consensus         3 ~v~Vd~~A~~ai~~Ga~l~~~GV~~~~~~f~~   34 (84)
T d2ey4a1           3 KVWIKDSAVAAVTHGADLAVPGIAKLHAGIKR   34 (84)
T ss_dssp             EEEECHHHHHHHTTTCCEEGGGEEEEETTCCT
T ss_pred             EEEEChhHHHHHHcCCCcCCCeEEEEcCCCCC
Confidence            48999999999999999999999999887653

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.42  E-value=0.011  Score=52.65  Aligned_cols=49  Identities=24%  Similarity=0.296  Sum_probs=39.9

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQ  134 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g  134 (397)
                      -.+|+.|||.+||+|..+. +|..+  +-+.+++|+++..++.++++++...
T Consensus       205 s~~gdiVLDpF~GSGTT~~-Aa~~l--gR~~ig~El~~~y~~~a~~Ri~~~~  253 (279)
T d1eg2a_         205 SHPGSTVLDFFAGSGVTAR-VAIQE--GRNSICTDAAPVFKEYYQKQLTFLQ  253 (279)
T ss_dssp             SCTTCEEEETTCTTCHHHH-HHHHH--TCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred             cCCCCEEEecCCCCcHHHH-HHHHh--CCeEEEEeCCHHHHHHHHHHHHHhh
Confidence            3689999999999998664 44444  3489999999999999999998764

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.25  E-value=0.036  Score=45.83  Aligned_cols=54  Identities=9%  Similarity=0.132  Sum_probs=39.8

Q ss_pred             hccCCCCCCeEEEEcCCCC-hHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         79 HYLDVQPGQKVLDMCAAPG-NKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG-~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...++++|++||=.|||+. ..++++|..+ +...|+++|.++++++.++    ++|.+.
T Consensus        22 ~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~-G~~~vi~~~~~~~k~~~ak----~lGa~~   76 (176)
T d2fzwa2          22 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAK----EFGATE   76 (176)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHH----HHTCSE
T ss_pred             HhhCCCCCCEEEEecchhHHHHHHHHHHHH-hcCceEEEcccHHHHHHHH----HhCCcE
Confidence            4467899999998887643 4455666665 4568999999999987654    678764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.12  E-value=0.06  Score=44.67  Aligned_cols=54  Identities=11%  Similarity=0.072  Sum_probs=39.8

Q ss_pred             hccCCCCCCeEEEEcCCCChHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLT-HIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~-~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...++++|+.||=.|+|.++.+. +++.. ....+|+++|.++++.+.++    ++|...
T Consensus        22 ~~~~vk~GdtVlV~GaGG~G~~~~~~~~~-~g~~~Vi~~~~~~~k~~~a~----~~Ga~~   76 (176)
T d2jhfa2          22 KVAKVTQGSTCAVFGLGGVGLSVIMGCKA-AGAARIIGVDINKDKFAKAK----EVGATE   76 (176)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred             HhhCCCCCCEEEEECCCCcHHHHHHHHHH-cCCceEEeecCcHHHHHHHH----HhCCee
Confidence            34578999999999997766444 44444 35679999999999988765    457653

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.11  Score=46.26  Aligned_cols=86  Identities=14%  Similarity=0.110  Sum_probs=59.3

Q ss_pred             CCeEEEEcCCCChHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLMN--DTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~~--~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      |++|-=+.-|++|.+..+|..+.  ++.+|+..+.++++++.+.+.++..+. ++.++..|..+...-. ..+.  ....
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dvs~~~sv~~~~~~--~~~~   78 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDF--LRKE   78 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHH--HHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEEecCCHHHHHHHHHH--HHHh
Confidence            67775555566777777776442  357999999999999999999988774 5788889987653100 0011  1112


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      .++.|+++.|+=
T Consensus        79 ~g~iDiLVnNAG   90 (275)
T d1wmaa1          79 YGGLDVLVNNAG   90 (275)
T ss_dssp             HSSEEEEEECCC
T ss_pred             cCCcEEEEEcCC
Confidence            257999999874

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.84  E-value=0.0092  Score=53.97  Aligned_cols=49  Identities=12%  Similarity=0.123  Sum_probs=39.3

Q ss_pred             CCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q psy17793         84 QPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQL  135 (397)
Q Consensus        84 ~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~  135 (397)
                      .+|+.|||.+||+|..+. +|..+  +-+.+|+|++++.++.+++++.....
T Consensus       249 ~~gdiVlDpF~GSGTT~~-AA~~l--gR~~Ig~El~~~y~~~a~~Rl~~~~~  297 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGL-VAERE--SRKWISFEMKPEYVAASAFRFLDNNI  297 (320)
T ss_dssp             CTTCEEEETTCTTCHHHH-HHHHT--TCEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred             cCCCEEEecCCCCcHHHH-HHHHc--CCcEEEEeCCHHHHHHHHHHHHhccc
Confidence            589999999999997664 44444  35799999999999999988766543

>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine transglycosylase, C3 domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Archaeosine tRNA-guanine transglycosylase, C3 domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.56  E-value=0.01  Score=43.38  Aligned_cols=32  Identities=25%  Similarity=0.356  Sum_probs=29.4

Q ss_pred             EEEechhhhhhhhcccceecccccccCCCCCC
Q psy17793        347 QIIVDQPCALAVLRGADVFAPGVLAMPLGKNS  378 (397)
Q Consensus       347 ~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~~  378 (397)
                      .|+||.....++++|+++|+|||+.++.++..
T Consensus         4 rV~Vd~gA~~~v~~Ga~l~~~GV~~~~~~~~~   35 (77)
T d1iq8a3           4 RVVVNKEAEPFARKGKDVFAKFVIFADPGIRP   35 (77)
T ss_dssp             EEEECTTTHHHHHTTCCEEGGGEEEECTTCCT
T ss_pred             EEEECcchHHHHHhcCCcccCeEEEEcCCCCC
Confidence            68999999999999999999999999987754

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.024  Score=47.02  Aligned_cols=53  Identities=21%  Similarity=0.224  Sum_probs=38.5

Q ss_pred             hccCCCCCCeEEEEcCCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         79 HYLDVQPGQKVLDMCAAP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...++++|++||=.|+|+ |..++++|..+  +.+++++|.++++++.+    +++|.+.
T Consensus        24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a----~~lGad~   77 (168)
T d1uufa2          24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAA----KALGADE   77 (168)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHH----HHHTCSE
T ss_pred             HHhCCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHH----hccCCcE
Confidence            345789999999998765 44566667664  35778899999987655    4678764

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=94.45  E-value=0.044  Score=52.27  Aligned_cols=54  Identities=11%  Similarity=0.234  Sum_probs=46.8

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMND-TGTLIALDKSKPRVTKLEETIKKLQLS  136 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~~-~~~V~avD~s~~rl~~l~~n~~~~g~~  136 (397)
                      +.+++.++|+||--|..+..++....+ ..+|+|+|.++...+.+++|++.++..
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~  264 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT  264 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence            567889999999999999888776544 369999999999999999999988764

>d2cx1a1 b.122.1.1 (A:91-183) Hypothetical protein APE0525, C-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Hypothetical protein APE0525, C-terminal domain
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.23  E-value=0.01  Score=45.15  Aligned_cols=31  Identities=29%  Similarity=0.538  Sum_probs=28.1

Q ss_pred             EEEechhhhhhhhcccceecccccccCCCCC
Q psy17793        347 QIIVDQPCALAVLRGADVFAPGVLAMPLGKN  377 (397)
Q Consensus       347 ~v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~  377 (397)
                      .+.||..+..|+++||++++|||+.++..+.
T Consensus         3 ~i~vd~gA~~al~~GA~Lm~pGIv~~~g~f~   33 (93)
T d2cx1a1           3 VVLVDKGAAIALAKGAHLMIPGVVGVEGSFT   33 (93)
T ss_dssp             EEEECHHHHHHHHTTCCEEGGGEEEEEECCC
T ss_pred             EEEECcCHHHHHHCCCCcCccccEECCCCCC
Confidence            5889999999999999999999999987654

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.18  E-value=0.018  Score=51.94  Aligned_cols=69  Identities=17%  Similarity=0.153  Sum_probs=45.9

Q ss_pred             EEEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhcc
Q psy17793        138 IQTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSL  217 (397)
Q Consensus       138 v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~  217 (397)
                      =+++++|..+.+..         ++++++|+|+.|||+-. |....    ..    .....++.....+.+..       
T Consensus        13 ~~l~~GD~le~l~~---------l~~~sVdli~tDPPY~~-~~~~~----~~----~~~~~~y~~~~~~~l~~-------   67 (320)
T d1booa_          13 GSMYIGDSLELLES---------FPEESISLVMTSPPFAL-QRKKE----YG----NLEQHEYVDWFLSFAKV-------   67 (320)
T ss_dssp             EEEEESCHHHHGGG---------SCSSCEEEEEECCCCSS-SCSCS----SC----SCHHHHHHHHHHHHHHH-------
T ss_pred             CEEEehhHHHHHhh---------CccCCCCEEEECCCCcC-CCCCC----CC----CCCHHHHHHHHHHHHHH-------
Confidence            37888998876533         56789999999999843 32111    11    11222333344778888       


Q ss_pred             ccccccccccCCcEEEEE
Q psy17793        218 FDWQGIPLLKKDGILVYC  235 (397)
Q Consensus       218 ~~~~a~~lLkpgG~lvys  235 (397)
                          +.++||++|.++..
T Consensus        68 ----~~rvLk~~G~i~i~   81 (320)
T d1booa_          68 ----VNKKLKPDGSFVVD   81 (320)
T ss_dssp             ----HHHHEEEEEEEEEE
T ss_pred             ----HHHhCcccCccccc
Confidence                99999999998765

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.35  Score=42.53  Aligned_cols=89  Identities=12%  Similarity=0.079  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEccccccccc-chhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTS-SQIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~-~~~d~~~~~~  161 (397)
                      .|+.+|=.|++ +|.+..+|..+ ..+.+|+..|.++.+++.+.+.++..+.+ ++..+.+|..+...- ...+.-...+
T Consensus         9 k~Kv~lITGas-~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           9 RDRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            36677777766 55666677654 45678999999999999999999988765 588889999764210 0011111122


Q ss_pred             cccCccEEEEcCCCC
Q psy17793        162 QKESFDRILLDAPCS  176 (397)
Q Consensus       162 ~~~~fD~Il~DpPCS  176 (397)
                        +..|.++.++...
T Consensus        88 --g~iD~lVnnAg~~  100 (257)
T d1xg5a_          88 --SGVDICINNAGLA  100 (257)
T ss_dssp             --CCCSEEEECCCCC
T ss_pred             --CCCCEEEeccccc
Confidence              6799999877543

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.78  E-value=0.031  Score=46.65  Aligned_cols=53  Identities=21%  Similarity=0.231  Sum_probs=38.6

Q ss_pred             ccCCCCCCeEEEEcC-CC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q psy17793         80 YLDVQPGQKVLDMCA-AP-GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI  138 (397)
Q Consensus        80 ~L~~~~g~~VLDlca-gp-G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v  138 (397)
                      ..++++|++||=.|+ |+ |..++++|..+  +.+|++++.++++++.++    ++|.+.+
T Consensus        22 ~~~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~----~lGa~~~   76 (171)
T d1iz0a2          22 RAQARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPL----ALGAEEA   76 (171)
T ss_dssp             HTTCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHH----HTTCSEE
T ss_pred             HhCCCCCCEEEEEeccccchhhhhhhhccc--cccccccccccccccccc----cccccee
Confidence            346889999998875 33 45566777765  468999999998887654    5787653

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=93.73  E-value=0.011  Score=51.97  Aligned_cols=68  Identities=13%  Similarity=0.216  Sum_probs=43.9

Q ss_pred             EEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       139 ~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      +++++|..+...         .++++++|+|+.|||+.. |.. .....       .....+.....+.+++        
T Consensus         6 ~i~~gDcle~l~---------~lpd~sVdliitdPPY~~-~~~-~~d~~-------~~~~~y~~~~~~~~~e--------   59 (256)
T d1g60a_           6 KIHQMNCFDFLD---------QVENKSVQLAVIDPPYNL-SKA-DWDSF-------DSHNEFLAFTYRWIDK--------   59 (256)
T ss_dssp             SEEECCHHHHHH---------HSCTTCEEEEEECCCCSS-CSS-GGGCC-------SSHHHHHHHHHHHHHH--------
T ss_pred             EEEeccHHHHHh---------hCcCCCcCEEEECCCCCC-CcC-cCcCC-------CCHHHHHHHHHHHHHH--------
Confidence            467888877642         256788999999999742 221 00001       1223344444778888        


Q ss_pred             cccccccccCCcEEEEE
Q psy17793        219 DWQGIPLLKKDGILVYC  235 (397)
Q Consensus       219 ~~~a~~lLkpgG~lvys  235 (397)
                         +.++|++||.++..
T Consensus        60 ---~~rvLk~~g~~~~~   73 (256)
T d1g60a_          60 ---VLDKLDKDGSLYIF   73 (256)
T ss_dssp             ---HHHHEEEEEEEEEE
T ss_pred             ---hhhccccCcccccc
Confidence               99999999988653

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.60  E-value=0.22  Score=41.38  Aligned_cols=56  Identities=21%  Similarity=0.258  Sum_probs=39.7

Q ss_pred             HHhccCCCCCCeEEEEcCCC--ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q psy17793         77 AGHYLDVQPGQKVLDMCAAP--GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI  138 (397)
Q Consensus        77 ~~~~L~~~~g~~VLDlcagp--G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v  138 (397)
                      +....++++|++||=.+++.  |..+.++|..+  +.+|+++..++++.+.++    ++|.+.+
T Consensus        21 l~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~----~~Ga~~v   78 (182)
T d1v3va2          21 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLK----QIGFDAA   78 (182)
T ss_dssp             HHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTCSEE
T ss_pred             HHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHH----hhhhhhh
Confidence            34466789999999766654  44556677764  469999999998876654    4677653

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.54  E-value=0.44  Score=41.74  Aligned_cols=89  Identities=12%  Similarity=0.134  Sum_probs=60.2

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc-chhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS-SQIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~~  162 (397)
                      +++.+|=.|++ +|.+..+|..+ ..+.+|+.+|.+++.++.+.+.++..|. ++..+..|.++...- ...+....  .
T Consensus         9 enKvalITGas-~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~--~   84 (251)
T d2c07a1           9 ENKVALVTGAG-RGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILT--E   84 (251)
T ss_dssp             SSCEEEEESTT-SHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHH--h
Confidence            36666766654 66787788765 4456999999999999999999988774 578888999765210 00011111  2


Q ss_pred             ccCccEEEEcCCCCC
Q psy17793        163 KESFDRILLDAPCSG  177 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg  177 (397)
                      -+..|.++.++.-..
T Consensus        85 ~g~iDilvnnag~~~   99 (251)
T d2c07a1          85 HKNVDILVNNAGITR   99 (251)
T ss_dssp             CSCCCEEEECCCCCC
T ss_pred             cCCceeeeecccccc
Confidence            268999998775433

>d1r3ea1 b.122.1.1 (A:238-318) Pseudouridine synthase II TruB, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Pseudouridine synthase II TruB, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.42  E-value=0.019  Score=42.53  Aligned_cols=27  Identities=15%  Similarity=0.290  Sum_probs=25.5

Q ss_pred             EEEechhhhhhhhcccceecccccccC
Q psy17793        347 QIIVDQPCALAVLRGADVFAPGVLAMP  373 (397)
Q Consensus       347 ~v~vd~~c~~a~LrGa~v~~pg~~~~~  373 (397)
                      .|+||.....++++|+++|+|||+++.
T Consensus         3 ~VvV~~~A~~~i~~Ga~l~~pGI~~~d   29 (81)
T d1r3ea1           3 RVVVHQESTKMILNGSQIHLEMLKEWD   29 (81)
T ss_dssp             EEECCTTTHHHHTTTCCEESSSCCEEC
T ss_pred             EEEEccchHHHHhcCCccccccceeec
Confidence            689999999999999999999999986

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.35  E-value=0.24  Score=40.71  Aligned_cols=52  Identities=17%  Similarity=0.121  Sum_probs=40.1

Q ss_pred             ccCCCCCCeEEEEcCCC--ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         80 YLDVQPGQKVLDMCAAP--GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        80 ~L~~~~g~~VLDlcagp--G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ..++++|++||=.|++.  |...+++|...  +.+|++++.++++.+.++    ++|.+.
T Consensus        23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~----~lGa~~   76 (179)
T d1qora2          23 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSAL----KAGAWQ   76 (179)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH----HHTCSE
T ss_pred             HhCCCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHH----hcCCeE
Confidence            45688999999886654  56677888875  468999999999987765    568764

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.77  E-value=0.49  Score=41.61  Aligned_cols=90  Identities=8%  Similarity=0.008  Sum_probs=58.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .|+.+|=.|++ +|.+..+|..+ ..+.+|+.+|.+++.++.+.+.++..+. ++..+..|.++...-. ..+.....+ 
T Consensus         7 kgK~alVTGas-~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~-   83 (259)
T d1xq1a_           7 KAKTVLVTGGT-KGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMF-   83 (259)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEeccCCCHHHHHHHHHHHHHHh-
Confidence            37777777765 55666666543 3567999999999999999888888764 5888889987542100 000001111 


Q ss_pred             ccCccEEEEcCCCCC
Q psy17793        163 KESFDRILLDAPCSG  177 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg  177 (397)
                      .+..|.++.++....
T Consensus        84 ~g~idilvnnAG~~~   98 (259)
T d1xq1a_          84 GGKLDILINNLGAIR   98 (259)
T ss_dssp             TTCCSEEEEECCC--
T ss_pred             CCCcccccccccccC
Confidence            357899998775433

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=92.77  E-value=0.071  Score=44.04  Aligned_cols=55  Identities=13%  Similarity=0.137  Sum_probs=42.1

Q ss_pred             hccCCCCCCeEEEEcCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         79 HYLDVQPGQKVLDMCAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...++++|++|+=.|+|+++....+.........|+++|.+++|++.++    ++|.+.
T Consensus        22 ~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~----~~GAd~   76 (175)
T d1cdoa2          22 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----VFGATD   76 (175)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCCE
T ss_pred             HhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH----HcCCcE
Confidence            3457899999999999996665554444446679999999999987754    678764

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.69  E-value=0.015  Score=51.57  Aligned_cols=91  Identities=16%  Similarity=0.158  Sum_probs=53.2

Q ss_pred             EEEEcccccccccchhhHHHhhhcccCccEEEEcCCCCCCCCCcccccccCccchHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17793        139 QTHVYDSTRINTSSQIDIERMKLQKESFDRILLDAPCSGFGQRPMFYNANSFLNLDKKIKSYANIQKKLLQAVYRFVSLF  218 (397)
Q Consensus       139 ~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~DpPCSg~G~~p~~~~~~s~~~~~~~~~~l~~~Q~~lL~~~~~f~~~~  218 (397)
                      .++.+|....+.         .++++++|+|+.|||+.. |..     .|      ....++.......+.+        
T Consensus         6 ~~~~~D~le~l~---------~l~d~SIDliitDPPYn~-~~~-----~~------~~~~~y~~~~~~~~~e--------   56 (279)
T d1eg2a_           6 VYDVCDCLDTLA---------KLPDDSVQLIICDPPYNI-MLA-----DW------DDHMDYIGWAKRWLAE--------   56 (279)
T ss_dssp             EEEECCHHHHHH---------TSCTTCEEEEEECCCSBC-CGG-----GG------GTCSSHHHHHHHHHHH--------
T ss_pred             eEEechHHHHHh---------hCcCCCccEEEECCCCCC-Ccc-----cc------cCHHHHHHHHHHHHHH--------
Confidence            466778877642         256789999999999742 211     01      1111233333667788        


Q ss_pred             cccccccccCCcEEEEEec-C----CCccccHHHHHHHHHHCCCcEEEe
Q psy17793        219 DWQGIPLLKKDGILVYCTC-S----LSVEENEAVIAWILHRHPEVELVQ  262 (397)
Q Consensus       219 ~~~a~~lLkpgG~lvysTC-S----~~~eEnE~vV~~~L~~~~~~~l~~  262 (397)
                         +.++||++|.++...- +    ....+.-..+..+++.. ++.+..
T Consensus        57 ---~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  101 (279)
T d1eg2a_          57 ---AERVLSPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNS-KMLLAN  101 (279)
T ss_dssp             ---HHHHEEEEEEEEEEECSCCCCCTTBCCHHHHHHHHHHHC-CCEEEE
T ss_pred             ---HHHHhCCCccEEEecCccccccccccchhhHHHHHHhcc-Cceeee
Confidence               9999999998876421 1    22223344455555554 455543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.47  E-value=0.78  Score=40.21  Aligned_cols=87  Identities=7%  Similarity=0.053  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccch-hhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQ-IDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~-~d~~~~~~~  162 (397)
                      .|+.+|=.|++ +|.+..+|..+ ..+.+|+.+|.++++++.+.+.++..|. ++..+..|.++...-.. .+ ......
T Consensus         7 ~GK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~-~~~~~~   83 (259)
T d2ae2a_           7 EGCTALVTGGS-RGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMN-TVANHF   83 (259)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHH-HHHHHT
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeeCCCHHHHHHHHH-HHHHHh
Confidence            47788877766 56666676644 3457999999999999999888888774 57788889876421000 00 001111


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      ..+.|.++.++-
T Consensus        84 ~~~idilvnnAG   95 (259)
T d2ae2a_          84 HGKLNILVNNAG   95 (259)
T ss_dssp             TTCCCEEEECCC
T ss_pred             CCCceEEEECCc
Confidence            246899998664

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.42  E-value=0.25  Score=40.65  Aligned_cols=53  Identities=21%  Similarity=0.268  Sum_probs=37.8

Q ss_pred             hccCCCCCCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         79 HYLDVQPGQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        79 ~~L~~~~g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ....+++|++||=.|+  +.|..++++|..+  +.+|+++..++++.+.++    ++|.+.
T Consensus        19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~----~~Ga~~   73 (183)
T d1pqwa_          19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLS----RLGVEY   73 (183)
T ss_dssp             TTSCCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH----TTCCSE
T ss_pred             HHhCCCCCCEEEEECCCCCcccccchhhccc--cccceeeecccccccccc----cccccc
Confidence            4456889999997653  4456677788765  468888888888776654    568764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.29  E-value=0.58  Score=41.08  Aligned_cols=88  Identities=19%  Similarity=0.224  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc-chhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS-SQIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~~  162 (397)
                      .|+.+|=.|++ +|.+..+|..+ ..+..|+.+|.+++.++.+.+.++..|. ++..+..|+++...- ...+.....+ 
T Consensus         4 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~-   80 (260)
T d1zema1           4 NGKVCLVTGAG-GNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDF-   80 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHh-
Confidence            47788877765 55666666543 3567899999999999999999888775 578888998764210 0001111122 


Q ss_pred             ccCccEEEEcCCCC
Q psy17793        163 KESFDRILLDAPCS  176 (397)
Q Consensus       163 ~~~fD~Il~DpPCS  176 (397)
                       +..|.++.++-..
T Consensus        81 -g~iDilVnnaG~~   93 (260)
T d1zema1          81 -GKIDFLFNNAGYQ   93 (260)
T ss_dssp             -SCCCEEEECCCCC
T ss_pred             -CCCCeehhhhccc
Confidence             6799999876543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=91.87  E-value=1.1  Score=39.26  Aligned_cols=88  Identities=9%  Similarity=0.037  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHH-cCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALL-MNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~-~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .|+++|=.|++ ++.+..+|.. ...+..|+.++.+++.++.+.+.++..+. ++.++..|+.+...-...-........
T Consensus         5 ~gK~alITGas-~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~~~~~   82 (258)
T d1ae1a_           5 KGTTALVTGGS-KGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVFD   82 (258)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            47788877776 5566666643 34567999999999999999999988874 577788998765210000001111223


Q ss_pred             cCccEEEEcCC
Q psy17793        164 ESFDRILLDAP  174 (397)
Q Consensus       164 ~~fD~Il~DpP  174 (397)
                      +..|+++.++.
T Consensus        83 g~idilinnag   93 (258)
T d1ae1a_          83 GKLNILVNNAG   93 (258)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCcEEEecccc
Confidence            56888887664

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=91.74  E-value=0.83  Score=37.86  Aligned_cols=58  Identities=19%  Similarity=0.419  Sum_probs=41.0

Q ss_pred             hccCCCCCCeEEEEcCCC---ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q psy17793         79 HYLDVQPGQKVLDMCAAP---GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI  138 (397)
Q Consensus        79 ~~L~~~~g~~VLDlcagp---G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v  138 (397)
                      +...+++|++||=..+|+   |..++++|..+  +.+|+++=.++...+...+.++++|.+.+
T Consensus        22 ~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~--Ga~vI~~v~~~~~~~~~~~~~~~lGad~v   82 (189)
T d1gu7a2          22 HYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQV   82 (189)
T ss_dssp             SSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEE
T ss_pred             HHhCCCCCCEEEEEeCCCchHHHHHHHHHhhc--CCeEEEEEecccccchHHhhhhhccccEE
Confidence            345688998887764444   45566788876  35777776666677777778888998764

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.52  E-value=1.1  Score=39.09  Aligned_cols=88  Identities=13%  Similarity=0.115  Sum_probs=58.3

Q ss_pred             CCCCCeEEEEcCCCChHHHHHHHHcC-CCcEEEE-EeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhh-HHHh
Q psy17793         83 VQPGQKVLDMCAAPGNKLTHIALLMN-DTGTLIA-LDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQID-IERM  159 (397)
Q Consensus        83 ~~~g~~VLDlcagpG~kt~~lA~~~~-~~~~V~a-vD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d-~~~~  159 (397)
                      |..|+.||=.| |++|.+.++|..+. .+.+|+. .+.+.+.++.+.+.++.+|. ++..+..|.++...-  .+ ....
T Consensus         3 ~L~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v--~~~~~~~   78 (259)
T d1ja9a_           3 PLAGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEV--VALFDKA   78 (259)
T ss_dssp             TTTTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHH--HHHHHHH
T ss_pred             CCCCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCHHHH--HHHHHHH
Confidence            45688888555 66778888886553 4456765 46788889999999999885 578899998764210  00 0111


Q ss_pred             hhcccCccEEEEcCC
Q psy17793        160 KLQKESFDRILLDAP  174 (397)
Q Consensus       160 ~~~~~~fD~Il~DpP  174 (397)
                      ....+..|.++.++-
T Consensus        79 ~~~~g~idilinnag   93 (259)
T d1ja9a_          79 VSHFGGLDFVMSNSG   93 (259)
T ss_dssp             HHHHSCEEEEECCCC
T ss_pred             HHHcCCCcEEEeccc
Confidence            112357899888664

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.17  E-value=1.2  Score=38.70  Aligned_cols=87  Identities=18%  Similarity=0.146  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .|..+|=.|++.| .+..+|..+ ..+.+|+.+|+++++++.+.+.++..|- ++..+.+|.++...- ..-........
T Consensus         6 ~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dvs~~~~v-~~~~~~i~~~~   82 (244)
T d1yb1a_           6 TGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDI-YSSAKKVKAEI   82 (244)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHH-HHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHH-HHHHHHHHHHc
Confidence            4777777776655 455555433 3567999999999999999999988774 688889999876310 00000011123


Q ss_pred             cCccEEEEcCC
Q psy17793        164 ESFDRILLDAP  174 (397)
Q Consensus       164 ~~fD~Il~DpP  174 (397)
                      +..|.++.++-
T Consensus        83 g~idilinnag   93 (244)
T d1yb1a_          83 GDVSILVNNAG   93 (244)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCceeEeecc
Confidence            57899998554

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.91  E-value=1.2  Score=39.28  Aligned_cols=87  Identities=16%  Similarity=0.219  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEEcccccccccc-hhhHHHhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLS--SIQTHVYDSTRINTSS-QIDIERMK  160 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~--~v~~~~~D~~~~~~~~-~~d~~~~~  160 (397)
                      .|+++|=.|++ +|.+..+|..+ ..+.+|+.+|.+++.++.+.+.+++.|..  ++..+..|.++...-. ..+.....
T Consensus         3 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSS-NGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            36777777766 45666666544 35679999999999999999999998764  5888999987652100 00111111


Q ss_pred             hcccCccEEEEcCC
Q psy17793        161 LQKESFDRILLDAP  174 (397)
Q Consensus       161 ~~~~~fD~Il~DpP  174 (397)
                      +  +..|.++.++-
T Consensus        82 ~--G~iDilVnnAG   93 (274)
T d1xhla_          82 F--GKIDILVNNAG   93 (274)
T ss_dssp             H--SCCCEEEECCC
T ss_pred             c--CCceEEEeecc
Confidence            2  57899998663

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.30  E-value=1.3  Score=38.79  Aligned_cols=87  Identities=16%  Similarity=0.188  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEEccccccccc-chhhHHHhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLS--SIQTHVYDSTRINTS-SQIDIERMK  160 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~--~v~~~~~D~~~~~~~-~~~d~~~~~  160 (397)
                      .|+.+|=.|++ +|.+..+|..+ ..+.+|+.+|.+++.++.+.+.+++.+..  ++..+.+|.++...- ...+.....
T Consensus         4 ~gK~alVTGas-~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSS-NGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            46677766655 56666666544 34579999999999999999999988764  488899998765210 000111111


Q ss_pred             hcccCccEEEEcCC
Q psy17793        161 LQKESFDRILLDAP  174 (397)
Q Consensus       161 ~~~~~fD~Il~DpP  174 (397)
                      +  +..|.++.++-
T Consensus        83 ~--g~iDilvnnAG   94 (272)
T d1xkqa_          83 F--GKIDVLVNNAG   94 (272)
T ss_dssp             H--SCCCEEEECCC
T ss_pred             h--CCceEEEeCCc
Confidence            2  67999998653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.83  E-value=1.5  Score=38.29  Aligned_cols=88  Identities=16%  Similarity=0.167  Sum_probs=57.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .|+++|=.||+.| .+..+|..+ ..+.+|+.++.+.++++.+.+.+...+...+.....|.......... ........
T Consensus        13 ~GK~alITGassG-IG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~   90 (269)
T d1xu9a_          13 QGKKVIVTGASKG-IGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQF-VAQAGKLM   90 (269)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHH-HHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHH-HHHHHHHh
Confidence            4788888887765 566666543 35679999999999999998877766656677777776543211000 01111123


Q ss_pred             cCccEEEEcCC
Q psy17793        164 ESFDRILLDAP  174 (397)
Q Consensus       164 ~~fD~Il~DpP  174 (397)
                      +..|.++.++-
T Consensus        91 g~~~~li~nag  101 (269)
T d1xu9a_          91 GGLDMLILNHI  101 (269)
T ss_dssp             TSCSEEEECCC
T ss_pred             CCccccccccc
Confidence            57899988764

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.57  E-value=1.9  Score=37.66  Aligned_cols=90  Identities=11%  Similarity=-0.008  Sum_probs=56.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCC-HHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKS-KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s-~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .|+.+|=.|++ ++.+..+|..+ ..+..|+..|.+ .+.++.+.+.+++.|. ++.++..|.++...- ..-.......
T Consensus        17 ~gK~~lITGas-~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v-~~~~~~~~~~   93 (272)
T d1g0oa_          17 EGKVALVTGAG-RGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDI-VRMFEEAVKI   93 (272)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHH-HHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC-ceeeEeCCCCCHHHH-HHHHHHHHHH
Confidence            36777777765 55666666544 345689888886 6778888888888875 578888888764210 0000001112


Q ss_pred             ccCccEEEEcCCCCC
Q psy17793        163 KESFDRILLDAPCSG  177 (397)
Q Consensus       163 ~~~fD~Il~DpPCSg  177 (397)
                      .+..|.++.++....
T Consensus        94 ~g~idilV~nag~~~  108 (272)
T d1g0oa_          94 FGKLDIVCSNSGVVS  108 (272)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             hCCCCccccccccch
Confidence            257899988775433

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.39  E-value=1.8  Score=37.65  Aligned_cols=85  Identities=16%  Similarity=0.126  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc-chhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS-SQIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~~  162 (397)
                      .|+.+|=.|+ ++|.+..+|..+ ..+..|+.+|.+++.++.+.+.++..|. ++..+..|.++...- ...+.....+ 
T Consensus        10 ~gK~alITGa-s~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~-~~~~~~~Dvs~~~~~~~~~~~~~~~~-   86 (255)
T d1fmca_          10 DGKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKL-   86 (255)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEccCCCHHHHHHHHHHHHHHc-
Confidence            4777776554 466777777654 4567999999999999999999998874 577888998765210 0001111112 


Q ss_pred             ccCccEEEEcC
Q psy17793        163 KESFDRILLDA  173 (397)
Q Consensus       163 ~~~fD~Il~Dp  173 (397)
                       +..|.++.++
T Consensus        87 -g~iDilvnnA   96 (255)
T d1fmca_          87 -GKVDILVNNA   96 (255)
T ss_dssp             -SSCCEEEECC
T ss_pred             -CCCCEeeeCC
Confidence             5799888755

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.28  E-value=2.1  Score=37.13  Aligned_cols=85  Identities=11%  Similarity=0.130  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHH-HHhCCCcEEEEEccccccccc-chhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETI-KKLQLSSIQTHVYDSTRINTS-SQIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~-~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~  161 (397)
                      .|+.+|=.|++ +|.+..+|..+ ..+.+|+.+|.+.+.++.+.+.+ ++.|. ++..+..|.++...- ...+.-...+
T Consensus         4 ~gK~~lITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           4 RGRVALVTGGS-RGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            36778877866 55666666543 35678999999999988876665 45564 577888998764210 0001111112


Q ss_pred             cccCccEEEEcC
Q psy17793        162 QKESFDRILLDA  173 (397)
Q Consensus       162 ~~~~fD~Il~Dp  173 (397)
                        +..|.++.++
T Consensus        82 --g~iDiLVnnA   91 (251)
T d1vl8a_          82 --GKLDTVVNAA   91 (251)
T ss_dssp             --SCCCEEEECC
T ss_pred             --CCCCEEEECC
Confidence              5799999865

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.18  E-value=0.56  Score=38.97  Aligned_cols=55  Identities=15%  Similarity=0.207  Sum_probs=36.6

Q ss_pred             hccCCCCC--CeEEEEc--CCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy17793         79 HYLDVQPG--QKVLDMC--AAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSS  137 (397)
Q Consensus        79 ~~L~~~~g--~~VLDlc--agpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~  137 (397)
                      ...++++|  +.||=.|  .|.|..++++|..++ ...|+++..++++...+   .+.+|.+.
T Consensus        22 ~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~G-a~~vi~~~~~~e~~~~l---~~~~gad~   80 (187)
T d1vj1a2          22 EKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLG-CSRVVGICGTQEKCLFL---TSELGFDA   80 (187)
T ss_dssp             HHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTT-CSEEEEEESSHHHHHHH---HHHSCCSE
T ss_pred             HHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcC-CcceecccchHHHHhhh---hhcccceE
Confidence            34456766  7788755  567889999999874 34677777776665544   23457653

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=88.59  E-value=1.4  Score=38.29  Aligned_cols=85  Identities=12%  Similarity=0.060  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc-chhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS-SQIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~~  162 (397)
                      .|+.+|=.|++ +|.+..+|..+ ..+.+|+.+|.+++.++.+.+.+..-  .++.++..|.++...- ...+.....+ 
T Consensus         5 ~gK~alVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~-   80 (251)
T d1zk4a1           5 DGKVAIITGGT-LGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDEDGWTKLFDATEKAF-   80 (251)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCC--CcEEEEEccCCCHHHHHHHHHHHHHHh-
Confidence            46677766755 55666666543 35678999999999888877766432  3688899998765210 0001111122 


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                       +..|.++.++-
T Consensus        81 -G~iDiLVnnAg   91 (251)
T d1zk4a1          81 -GPVSTLVNNAG   91 (251)
T ss_dssp             -SSCCEEEECCC
T ss_pred             -CCceEEEeccc
Confidence             67998887663

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.51  E-value=1.9  Score=37.51  Aligned_cols=86  Identities=13%  Similarity=0.127  Sum_probs=58.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEEccccccccc-chhhHHHhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLS--SIQTHVYDSTRINTS-SQIDIERMK  160 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~--~v~~~~~D~~~~~~~-~~~d~~~~~  160 (397)
                      .|+.+|=.|++ +|.+..+|..+ ..+.+|+.+|.++++++.+.+.++..+..  ++..+..|.++...- ...+.....
T Consensus         4 ~gKvalVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSS-NGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            35666666655 56676677544 45679999999999999999999988764  488999998765210 000111111


Q ss_pred             hcccCccEEEEcC
Q psy17793        161 LQKESFDRILLDA  173 (397)
Q Consensus       161 ~~~~~fD~Il~Dp  173 (397)
                      +  +..|.++.++
T Consensus        83 ~--g~iDilvnnA   93 (264)
T d1spxa_          83 F--GKLDILVNNA   93 (264)
T ss_dssp             H--SCCCEEEECC
T ss_pred             h--CCCCEeeccc
Confidence            2  6799888865

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=88.19  E-value=1.4  Score=38.44  Aligned_cols=87  Identities=9%  Similarity=0.055  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCC-HHHHHHHHHHHHHhCCCcEEEEEccccccccc-chhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKS-KPRVTKLEETIKKLQLSSIQTHVYDSTRINTS-SQIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s-~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~  161 (397)
                      .|+.+|=.|++ +|.+..+|..+ ..+.+|+.+|.+ +..++.+.+.+...+-.++.++..|.++...- ...+.....+
T Consensus         3 ~gK~alITGas-~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           3 KGKVAVVTGST-SGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            46777755555 66677777644 356789999986 67788887776554334688889998865210 0001111122


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                        ++.|.++.++-
T Consensus        82 --G~iDiLVnnAG   92 (260)
T d1x1ta1          82 --GRIDILVNNAG   92 (260)
T ss_dssp             --SCCSEEEECCC
T ss_pred             --CCCcEEEeecc
Confidence              67999998774

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=87.86  E-value=2.1  Score=36.92  Aligned_cols=83  Identities=14%  Similarity=0.095  Sum_probs=52.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc-chhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS-SQIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~~  162 (397)
                      .|+.+|=.|++ +|.+..+|..+ ..+.+|+.+|.+++.++.+.+.+   + .++..+..|.++...- ...+....  .
T Consensus         3 ~gK~alITGas-~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~--~   75 (243)
T d1q7ba_           3 EGKIALVTGAS-RGIGRAIAETLAARGAKVIGTATSENGAQAISDYL---G-ANGKGLMLNVTDPASIESVLEKIRA--E   75 (243)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---G-GGEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh---C-CCCcEEEEEecCHHHhhhhhhhhhc--c
Confidence            36777777766 55666666544 35678999999999888776554   3 2467778888764210 00011111  2


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                      -+..|.++.++-
T Consensus        76 ~g~iDilVnnAg   87 (243)
T d1q7ba_          76 FGEVDILVNNAG   87 (243)
T ss_dssp             TCSCSEEEECCC
T ss_pred             cCCcceehhhhh
Confidence            267999998764

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=86.75  E-value=0.33  Score=43.54  Aligned_cols=73  Identities=11%  Similarity=-0.001  Sum_probs=51.5

Q ss_pred             cCCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcccCccEEEEc
Q psy17793         93 CAAPGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQKESFDRILLD  172 (397)
Q Consensus        93 cagpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~~~fD~Il~D  172 (397)
                      ...||+-.+ ++.++...-+++.+|..+.-.+.+++++..  -.++.+...|+......     --|  +.++=-+||+|
T Consensus        88 ~~YPGSP~i-a~~llR~~Drl~l~ELHp~e~~~L~~~~~~--~~~~~v~~~DG~~~l~a-----llP--P~~rRgLVLID  157 (271)
T d2oo3a1          88 SYYPGSPYF-AINQLRSQDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNA-----LLP--PPEKRGLIFID  157 (271)
T ss_dssp             CEEECHHHH-HHHHSCTTSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHH-----HCS--CTTSCEEEEEC
T ss_pred             CcCCCCHHH-HHHhCCCCCceEEeecCHHHHHHHHHHhcc--CCCceEEcCchHHHHHh-----hCC--CCCCceEEEec
Confidence            357887665 445666788999999999999999887543  25799999998765311     001  12344699999


Q ss_pred             CCC
Q psy17793        173 APC  175 (397)
Q Consensus       173 pPC  175 (397)
                      ||+
T Consensus       158 PpY  160 (271)
T d2oo3a1         158 PSY  160 (271)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            994

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=86.64  E-value=2.5  Score=36.60  Aligned_cols=83  Identities=12%  Similarity=0.065  Sum_probs=51.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc-chhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS-SQIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~~  162 (397)
                      .|+.+|=.|++ +|.+..+|..+ ..+.+|+.+|.+++.++.+.+.   ++ .+..++..|.++...- ...+.....+ 
T Consensus         5 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~---~~-~~~~~~~~Dv~~~~~~~~~~~~~~~~~-   78 (253)
T d1hxha_           5 QGKVALVTGGA-SGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAE---LG-ERSMFVRHDVSSEADWTLVMAAVQRRL-   78 (253)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH---HC-TTEEEECCCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---hC-CCeEEEEeecCCHHHHHHHHHHHHHHh-
Confidence            46777766655 55666677644 3567899999999888776554   34 3466777888764210 0001111112 


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                       +..|.++.++-
T Consensus        79 -g~iDilVnnAG   89 (253)
T d1hxha_          79 -GTLNVLVNNAG   89 (253)
T ss_dssp             -CSCCEEEECCC
T ss_pred             -CCCCeEEeccc
Confidence             67899998763

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=86.45  E-value=4.7  Score=34.64  Aligned_cols=85  Identities=8%  Similarity=0.049  Sum_probs=56.8

Q ss_pred             CCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc-chhhHHHhhhcc
Q psy17793         86 GQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS-SQIDIERMKLQK  163 (397)
Q Consensus        86 g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~~~  163 (397)
                      |+.+|=.|++ +|.+..+|..+ ..+.+|+.+|.+++.++.+.+.++..|. ++..+..|.++...- ...+....  .-
T Consensus         2 gKValITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvs~~~~v~~~~~~~~~--~~   77 (257)
T d2rhca1           2 SEVALVTGAT-SGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVE--RY   77 (257)
T ss_dssp             CCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHH--HT
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeecCCHHHHHHHHHHHHH--Hh
Confidence            4455666654 56677777654 3567899999999999999999988875 578889998765210 00011111  12


Q ss_pred             cCccEEEEcCC
Q psy17793        164 ESFDRILLDAP  174 (397)
Q Consensus       164 ~~fD~Il~DpP  174 (397)
                      ++.|.++.++-
T Consensus        78 g~iDilVnnAG   88 (257)
T d2rhca1          78 GPVDVLVNNAG   88 (257)
T ss_dssp             CSCSEEEECCC
T ss_pred             CCCCEEEeccc
Confidence            67999998764

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.39  E-value=2.2  Score=37.04  Aligned_cols=83  Identities=14%  Similarity=0.143  Sum_probs=53.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc-chhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS-SQIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~~  162 (397)
                      .|+.+|=.|++. +.+..+|..+ ..+.+|+.+|++++.++.+.+.+     .++..+..|.++...- ...+.....+ 
T Consensus         5 ~GK~alITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~-----~~~~~~~~Dvs~~~~v~~~~~~~~~~~-   77 (250)
T d1ydea1           5 AGKVVVVTGGGR-GIGAGIVRAFVNSGARVVICDKDESGGRALEQEL-----PGAVFILCDVTQEDDVKTLVSETIRRF-   77 (250)
T ss_dssp             TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----TTEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----CCCeEEEccCCCHHHHHHHHHHHHHhc-
Confidence            477888888765 5666666644 35679999999998887765442     3577888998765210 0001111122 


Q ss_pred             ccCccEEEEcCCC
Q psy17793        163 KESFDRILLDAPC  175 (397)
Q Consensus       163 ~~~fD~Il~DpPC  175 (397)
                       ++.|.++.++-.
T Consensus        78 -g~iDilVnnAG~   89 (250)
T d1ydea1          78 -GRLDCVVNNAGH   89 (250)
T ss_dssp             -SCCCEEEECCCC
T ss_pred             -CCCCEEEecccc
Confidence             679999987753

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=86.34  E-value=6.2  Score=34.00  Aligned_cols=87  Identities=13%  Similarity=0.093  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLS-SIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~-~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|+.+|=.|++. |.+..+|..+ ..+.+|+.+|.+++.++.+.+.+...+-. ++..+..|.++...-. ..+.....+
T Consensus         3 ~gK~alITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGS-GLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            366777777665 4555555533 35679999999999999988877766543 5788889987652100 001111112


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                        +..|.++.++-
T Consensus        82 --G~iDiLVnnAG   92 (258)
T d1iy8a_          82 --GRIDGFFNNAG   92 (258)
T ss_dssp             --SCCSEEEECCC
T ss_pred             --CCCCEEEECCc
Confidence              67999998764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.20  E-value=1.9  Score=34.54  Aligned_cols=38  Identities=18%  Similarity=0.167  Sum_probs=26.3

Q ss_pred             EEEEcCCCChHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHH
Q psy17793         89 VLDMCAAPGNKLTHIALLMND---TGTLIALDKSKPRVTKLEE  128 (397)
Q Consensus        89 VLDlcagpG~kt~~lA~~~~~---~~~V~avD~s~~rl~~l~~  128 (397)
                      |+=+|  .|..+..+|..+..   ..+|+++|.+++.++.+++
T Consensus         4 I~IIG--~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~   44 (171)
T d2g5ca2           4 VLIVG--VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD   44 (171)
T ss_dssp             EEEES--CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH
T ss_pred             EEEEc--cCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH
Confidence            44454  47777767755432   3489999999999887664

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.10  E-value=2.1  Score=37.09  Aligned_cols=85  Identities=11%  Similarity=0.018  Sum_probs=53.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc-chhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS-SQIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~~  162 (397)
                      .|+.+|=.|++ ++.+..+|..+ ..+.+|+.+|++++.++.+.+.+   + .++.++..|.++...- ...+.-..  .
T Consensus         5 ~gK~alITGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~--~   77 (244)
T d1nffa_           5 TGKVALVSGGA-RGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL---A-DAARYVHLDVTQPAQWKAAVDTAVT--A   77 (244)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---G-GGEEEEECCTTCHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---h-CcceEEEeecCCHHHHHHHHHHHHH--H
Confidence            46778877766 55666666544 35679999999998887766544   3 3577888998765210 00011111  1


Q ss_pred             ccCccEEEEcCCCC
Q psy17793        163 KESFDRILLDAPCS  176 (397)
Q Consensus       163 ~~~fD~Il~DpPCS  176 (397)
                      -+..|.++.++-..
T Consensus        78 ~g~idilinnAG~~   91 (244)
T d1nffa_          78 FGGLHVLVNNAGIL   91 (244)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             hCCCeEEEECCccc
Confidence            25799999877543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=84.87  E-value=2.5  Score=36.11  Aligned_cols=86  Identities=15%  Similarity=0.092  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCCCC-hHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPG-NKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG-~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~  162 (397)
                      .|+.||=.|++.| |.+..+|..+ ..+.+|+..+.+++..+.+.+.....+..  .....|....... ..........
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~   80 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSD--IVLQCDVAEDASI-DTMFAELGKV   80 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEECCTTCHHHH-HHHHHHHHTT
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCc--ceeecccchHHHH-HHHHHHhhhc
Confidence            5788898888774 5555555443 35678999999988888887777766533  3444454432110 0000111123


Q ss_pred             ccCccEEEEcC
Q psy17793        163 KESFDRILLDA  173 (397)
Q Consensus       163 ~~~fD~Il~Dp  173 (397)
                      .+..|.++.++
T Consensus        81 ~~~~d~~v~~a   91 (258)
T d1qsga_          81 WPKFDGFVHSI   91 (258)
T ss_dssp             CSSEEEEEECC
T ss_pred             ccccceEEEee
Confidence            35678887765

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=84.71  E-value=4.6  Score=34.55  Aligned_cols=80  Identities=13%  Similarity=0.027  Sum_probs=51.0

Q ss_pred             EcCCCChHHHHHHHHcC-CCcEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEEccccccccc-chhhHHHhhhcccCccE
Q psy17793         92 MCAAPGNKLTHIALLMN-DTGTLIALDK-SKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS-SQIDIERMKLQKESFDR  168 (397)
Q Consensus        92 lcagpG~kt~~lA~~~~-~~~~V~avD~-s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~~~~~fD~  168 (397)
                      +.-|++|.+..+|..+. .+.+|+..|. +++.++.+.+.++..|. ++.++..|.++...- ...+.-.  ..-+..|.
T Consensus         6 ITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~iDi   82 (244)
T d1edoa_           6 VTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGG-QAITFGGDVSKEADVEAMMKTAI--DAWGTIDV   82 (244)
T ss_dssp             ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTC-EEEEEECCTTSHHHHHHHHHHHH--HHSSCCSE
T ss_pred             EeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHHHH--HHcCCCCc
Confidence            34455677877776553 4557877654 78889999999988874 577888998765210 0001111  12267999


Q ss_pred             EEEcCC
Q psy17793        169 ILLDAP  174 (397)
Q Consensus       169 Il~DpP  174 (397)
                      ++.++-
T Consensus        83 LVnnAg   88 (244)
T d1edoa_          83 VVNNAG   88 (244)
T ss_dssp             EEECCC
T ss_pred             cccccc
Confidence            888763

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.54  E-value=2.6  Score=36.18  Aligned_cols=85  Identities=13%  Similarity=0.014  Sum_probs=52.5

Q ss_pred             CCCeEEEEcCCCC-hHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPG-NKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG-~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|+++|=.||+.+ |.+..+|..+ ..+.+|+..+.+++..+.+++..+..+  +..++..|..+...-. ..+....  
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~--   82 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKE--   82 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHH--
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccC--cccccccccCCHHHHHHHHHHHHH--
Confidence            4788999998764 5566566543 346789889999877777766665554  3567788887642100 0011111  


Q ss_pred             cccCccEEEEcC
Q psy17793        162 QKESFDRILLDA  173 (397)
Q Consensus       162 ~~~~fD~Il~Dp  173 (397)
                      .-+..|.++-++
T Consensus        83 ~~g~iDilVnna   94 (256)
T d1ulua_          83 AFGGLDYLVHAI   94 (256)
T ss_dssp             HHSSEEEEEECC
T ss_pred             hcCCceEEEecc
Confidence            125789887654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.42  E-value=6.3  Score=33.74  Aligned_cols=80  Identities=18%  Similarity=0.106  Sum_probs=54.0

Q ss_pred             EEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhcccCcc
Q psy17793         90 LDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQKESFD  167 (397)
Q Consensus        90 LDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~~~~fD  167 (397)
                      |=.|++ +|.+..+|..+ ..+..|+.+|++++.++.+.+.++..|. ++..+.+|.++...-. ..+.....  -++.|
T Consensus         5 lITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~--~g~iD   80 (255)
T d1gega_           5 LVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKT--LGGFD   80 (255)
T ss_dssp             EEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHH--TTCCC
T ss_pred             EEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHH--hCCcc
Confidence            445544 66777777644 3567999999999999999999988874 5788889997652100 00111111  26799


Q ss_pred             EEEEcC
Q psy17793        168 RILLDA  173 (397)
Q Consensus       168 ~Il~Dp  173 (397)
                      .++.++
T Consensus        81 ilVnnA   86 (255)
T d1gega_          81 VIVNNA   86 (255)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            999865

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=84.37  E-value=2.3  Score=36.57  Aligned_cols=82  Identities=13%  Similarity=0.032  Sum_probs=51.9

Q ss_pred             EEEEcCCCChHHHHHHHHcCCC--------cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHh
Q psy17793         89 VLDMCAAPGNKLTHIALLMNDT--------GTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERM  159 (397)
Q Consensus        89 VLDlcagpG~kt~~lA~~~~~~--------~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~  159 (397)
                      ||=-|++ +|.+..+|..+...        ..|+.++.+++.++.+.+.++..|. ++.++..|.++...-. ..+.-  
T Consensus         4 vlITGas-~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dvt~~~~v~~~~~~~--   79 (240)
T d2bd0a1           4 LLITGAG-KGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-LTDTITADISDMADVRRLTTHI--   79 (240)
T ss_dssp             EEEETTT-SHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC-EEEEEECCTTSHHHHHHHHHHH--
T ss_pred             EEEccCC-CHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHH--
Confidence            3444544 55676676654222        2489999999999999988888774 5778889987652100 00111  


Q ss_pred             hhcccCccEEEEcCC
Q psy17793        160 KLQKESFDRILLDAP  174 (397)
Q Consensus       160 ~~~~~~fD~Il~DpP  174 (397)
                      ...-+..|.++.++-
T Consensus        80 ~~~~g~iDilvnnAg   94 (240)
T d2bd0a1          80 VERYGHIDCLVNNAG   94 (240)
T ss_dssp             HHHTSCCSEEEECCC
T ss_pred             HHHcCCcceeecccc
Confidence            112267999988663

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=83.51  E-value=4.7  Score=34.85  Aligned_cols=85  Identities=15%  Similarity=0.079  Sum_probs=54.9

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~~  162 (397)
                      .|+.+|=.|++ +|.+..+|..+ ..+.+|+.+|.++++++.+.+.+...+  .+.++..|.++...-. ..+.....+ 
T Consensus         5 ~gKvalITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~-   80 (268)
T d2bgka1           5 QDKVAIITGGA-GGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPD--VISFVHCDVTKDEDVRNLVDTTIAKH-   80 (268)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTT--TEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCC--ceEEEEccCCCHHHHHHHHHHHHHHc-
Confidence            47788888866 45666676544 456799999999999888777665433  4778888987642100 001111122 


Q ss_pred             ccCccEEEEcCC
Q psy17793        163 KESFDRILLDAP  174 (397)
Q Consensus       163 ~~~fD~Il~DpP  174 (397)
                       +.+|.++.++-
T Consensus        81 -g~iD~lVnnAG   91 (268)
T d2bgka1          81 -GKLDIMFGNVG   91 (268)
T ss_dssp             -SCCCEEEECCC
T ss_pred             -CCcceeccccc
Confidence             67999998663

>d2q07a1 b.122.1.1 (A:460-527) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Uncharacterized protein AF0587
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.32  E-value=0.18  Score=35.68  Aligned_cols=27  Identities=22%  Similarity=0.342  Sum_probs=21.7

Q ss_pred             EEechhhhhhhhcccceecccccccCCCCCCC
Q psy17793        348 IIVDQPCALAVLRGADVFAPGVLAMPLGKNSY  379 (397)
Q Consensus       348 v~vd~~c~~a~LrGa~v~~pg~~~~~~~~~~~  379 (397)
                      |++|.    .+.+| +||+|||+.++++|..-
T Consensus         3 V~idd----fv~~G-~v~apgI~~~d~~I~~G   29 (68)
T d2q07a1           3 VEIGD----FEVKG-TIFAGGVLRADEKIRPN   29 (68)
T ss_dssp             EEECS----SCCCS-EEEGGGEEEECTTCCTT
T ss_pred             EEECC----cccCC-cccccchhhhCCCCCCC
Confidence            55552    67789 99999999999998754

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=83.24  E-value=0.61  Score=38.35  Aligned_cols=50  Identities=18%  Similarity=0.098  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEcC--CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q psy17793         83 VQPGQKVLDMCA--APGNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI  138 (397)
Q Consensus        83 ~~~g~~VLDlca--gpG~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v  138 (397)
                      .++++.||=-+|  |-|..++++|..++  .+|++..-+++..+.+    +++|.+.+
T Consensus        21 ~~~~~~VLV~gaaGgVG~~avQlAk~~G--a~Viat~~s~~k~~~~----~~lGad~v   72 (167)
T d1tt7a2          21 SPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYL----KQLGASEV   72 (167)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHH----HHHTCSEE
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHHHHcC--CceEEEecCHHHHHHH----Hhhcccce
Confidence            345667875543  33456678888763  6899999888887665    45687654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.21  E-value=6.8  Score=34.54  Aligned_cols=87  Identities=6%  Similarity=-0.005  Sum_probs=56.5

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEEcccccccccc-hhhHHH
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQ----LSSIQTHVYDSTRINTSS-QIDIER  158 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g----~~~v~~~~~D~~~~~~~~-~~d~~~  158 (397)
                      .|..+|=.|++ +|.+..+|..+ ..+.+|+.+|.++++++.+.+.++...    -.++..+.+|+++...-. ..+...
T Consensus        11 ~gKvalITGas-~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   89 (297)
T d1yxma1          11 QGQVAIVTGGA-TGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   89 (297)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence            57788866655 55676676544 456799999999999998887776532    135888899987652100 001111


Q ss_pred             hhhcccCccEEEEcCC
Q psy17793        159 MKLQKESFDRILLDAP  174 (397)
Q Consensus       159 ~~~~~~~fD~Il~DpP  174 (397)
                      .  .-+..|+++.++.
T Consensus        90 ~--~~G~iDiLVnnAg  103 (297)
T d1yxma1          90 D--TFGKINFLVNNGG  103 (297)
T ss_dssp             H--HHSCCCEEEECCC
T ss_pred             H--HhCCeEEEEeecc
Confidence            1  1257999988764

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.93  E-value=5.6  Score=33.95  Aligned_cols=78  Identities=13%  Similarity=0.127  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhhcc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKLQK  163 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~~~  163 (397)
                      .|+++|=.|++ +|.+..+|..+ ..+.+|+.+|.+++.++.+.+.+     .++..+..|..+...   .+....  .-
T Consensus         6 ~GK~~lITGas-~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~d~~~---v~~~~~--~~   74 (244)
T d1pr9a_           6 AGRRVLVTGAG-KGIGRGTVQALHATGARVVAVSRTQADLDSLVREC-----PGIEPVCVDLGDWEA---TERALG--SV   74 (244)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHH---HHHHHT--TC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHH---HHHHHH--Hh
Confidence            58888888876 55666666654 34679999999998887765432     346778888876421   111111  22


Q ss_pred             cCccEEEEcC
Q psy17793        164 ESFDRILLDA  173 (397)
Q Consensus       164 ~~fD~Il~Dp  173 (397)
                      ++.|.++.++
T Consensus        75 g~iDilVnnA   84 (244)
T d1pr9a_          75 GPVDLLVNNA   84 (244)
T ss_dssp             CCCCEEEECC
T ss_pred             CCceEEEecc
Confidence            5799988865

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=82.79  E-value=3.7  Score=35.44  Aligned_cols=86  Identities=7%  Similarity=0.074  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHH-HHhCCCcEEEEEccccccccc-chhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETI-KKLQLSSIQTHVYDSTRINTS-SQIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~-~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~  161 (397)
                      .|+++|=.|++ +|.+..+|..+ ..+.+|+.+|.+...++.+.+.+ +..| .++..+.+|.++...- ...+.-.  .
T Consensus         8 ~gK~alITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~--~   83 (260)
T d1h5qa_           8 VNKTIIVTGGN-RGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG-VKTKAYQCDVSNTDIVTKTIQQID--A   83 (260)
T ss_dssp             TTEEEEEETTT-SHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT-CCEEEEECCTTCHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC-CceEEEEccCCCHHHHHHHHHHHH--H
Confidence            36777877755 56677677644 35678999999988887776655 4456 3578889998765210 0001111  1


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-+..|.++.++.
T Consensus        84 ~~g~iDilVnnAg   96 (260)
T d1h5qa_          84 DLGPISGLIANAG   96 (260)
T ss_dssp             HSCSEEEEEECCC
T ss_pred             HhCCCcEeccccc
Confidence            2267999888664

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=82.34  E-value=6.8  Score=33.79  Aligned_cols=86  Identities=14%  Similarity=0.080  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCC-HHHHHHHHHHHHHhCCCcEEEEEcccccccccc-hhhHHHhhh
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKS-KPRVTKLEETIKKLQLSSIQTHVYDSTRINTSS-QIDIERMKL  161 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s-~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~-~~d~~~~~~  161 (397)
                      .|+.+|=.|++ +|.+..+|..+ ..+.+|+.++.+ +..++.+.+.++..|. ++..+..|.++...-. ..+....  
T Consensus         6 ~gK~alITGas-~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~--   81 (261)
T d1geea_           6 EGKVVVITGSS-TGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG-EAIAVKGDVTVESDVINLVQSAIK--   81 (261)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHH--
Confidence            46777766666 45666666544 345689999987 4578888888888875 5778889987652100 0011111  


Q ss_pred             cccCccEEEEcCC
Q psy17793        162 QKESFDRILLDAP  174 (397)
Q Consensus       162 ~~~~fD~Il~DpP  174 (397)
                      .-++.|.++.++-
T Consensus        82 ~~G~iDiLVnnAG   94 (261)
T d1geea_          82 EFGKLDVMINNAG   94 (261)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HhCCCCEeeccce
Confidence            1257999888653

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=82.16  E-value=2.1  Score=38.65  Aligned_cols=80  Identities=11%  Similarity=0.050  Sum_probs=41.7

Q ss_pred             eEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCH-----HHHHHHHHHHHHhCCCcEEEEEcccccccccchhhHHHhhh
Q psy17793         88 KVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSK-----PRVTKLEETIKKLQLSSIQTHVYDSTRINTSSQIDIERMKL  161 (397)
Q Consensus        88 ~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~-----~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~~~~d~~~~~~  161 (397)
                      .||=.| |+|-.+.+++..+ ..+-.|+++|...     .+++.+..... ..-.+++++.+|.++...      -...+
T Consensus         3 ~vLITG-atGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~------~~~~~   74 (357)
T d1db3a_           3 VALITG-VTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPH-TCNPKFHLHYGDLSDTSN------LTRIL   74 (357)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEECC----------------------CCEEECCCCSSCHHH------HHHHH
T ss_pred             EEEEeC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhh-hcCCCeEEEEeecCCHHH------HHHHH
Confidence            344444 5699999998755 3456899999843     33333322211 122468899999875421      01112


Q ss_pred             cccCccEEEEcCCC
Q psy17793        162 QKESFDRILLDAPC  175 (397)
Q Consensus       162 ~~~~fD~Il~DpPC  175 (397)
                      ....+|.|+-=+-+
T Consensus        75 ~~~~~d~v~h~aa~   88 (357)
T d1db3a_          75 REVQPDEVYNLGAM   88 (357)
T ss_dssp             HHHCCSEEEECCCC
T ss_pred             hccCCCEEEEeecc
Confidence            33468999874433

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=81.83  E-value=3.6  Score=35.63  Aligned_cols=82  Identities=16%  Similarity=0.113  Sum_probs=51.1

Q ss_pred             CCCeEEEEcCCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEEccccccccc-chhhHHHhhhc
Q psy17793         85 PGQKVLDMCAAPGNKLTHIALLM-NDTGTLIALDKSKPRVTKLEETIKKLQLSSIQTHVYDSTRINTS-SQIDIERMKLQ  162 (397)
Q Consensus        85 ~g~~VLDlcagpG~kt~~lA~~~-~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v~~~~~D~~~~~~~-~~~d~~~~~~~  162 (397)
                      .|+.+|=.|++.| .+..+|..+ ..+.+|+.+|+++++++.+.+   .++ .++.++..|.++...- ...+.....+ 
T Consensus         4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~---~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~-   77 (254)
T d1hdca_           4 SGKTVIITGGARG-LGAEAARQAVAAGARVVLADVLDEEGAATAR---ELG-DAARYQHLDVTIEEDWQRVVAYAREEF-   77 (254)
T ss_dssp             CCSEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TTG-GGEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HhC-CceEEEEcccCCHHHHHHHHHHHHHHc-
Confidence            4778888887754 566666544 356789999999987766544   344 3578889998764210 0001111112 


Q ss_pred             ccCccEEEEcC
Q psy17793        163 KESFDRILLDA  173 (397)
Q Consensus       163 ~~~fD~Il~Dp  173 (397)
                       +..|.++.++
T Consensus        78 -g~iDilVnnA   87 (254)
T d1hdca_          78 -GSVDGLVNNA   87 (254)
T ss_dssp             -SCCCEEEECC
T ss_pred             -CCccEEEecC
Confidence             5799888765

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.62  E-value=0.65  Score=38.58  Aligned_cols=51  Identities=16%  Similarity=-0.022  Sum_probs=36.0

Q ss_pred             CCCCCCeEEEEcCCC--ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q psy17793         82 DVQPGQKVLDMCAAP--GNKLTHIALLMNDTGTLIALDKSKPRVTKLEETIKKLQLSSI  138 (397)
Q Consensus        82 ~~~~g~~VLDlcagp--G~kt~~lA~~~~~~~~V~avD~s~~rl~~l~~n~~~~g~~~v  138 (397)
                      ..++|++||=-|++.  |..++++|...  +.+|++.-.+++..+.++    ++|.+.+
T Consensus        28 ~~~~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~----~lGa~~v   80 (176)
T d1xa0a2          28 LTPERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLR----VLGAKEV   80 (176)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHH----HTTCSEE
T ss_pred             CCCCCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHH----hccccee
Confidence            356788899777543  45666777764  568899988888876664    5687653