Psyllid ID: psy1910

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccEccccccccccHcHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mrldkpigswllfwpcgwsismaavpgclpdlhtlALFGLGAVimrgagctindlwdkdidskvsrtkdrplvngsistTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE
Flexible Loop (DISEMBL)
MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLwdkdidskvsrtkdrplvngsistTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE
Low Complexity Region (SEG)
MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDaiiflagqlgagllilvqlnlYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE
Disordered region (IsUnstruct)
******IGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCV**
Disordered Region (DISOPRED)
MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGC***
Disordered Region (DISEMBL)
MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE
Disordered Region (DISPRO)
*RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGC***
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
Q16QL3	441	4-hydroxybenzoate polypre	N/A	N/A	0.986	0.342	0.675	4e-58
Q298G6	397	4-hydroxybenzoate polypre	yes	N/A	0.993	0.382	0.657	7e-55
Q9VHS7	392	4-hydroxybenzoate polypre	yes	N/A	0.993	0.387	0.657	9e-55
Q2KIQ4	371	4-hydroxybenzoate polypre	yes	N/A	0.993	0.409	0.631	4e-52
Q499N4	374	4-hydroxybenzoate polypre	yes	N/A	0.993	0.406	0.598	1e-50
Q66JT7	374	4-hydroxybenzoate polypre	yes	N/A	0.993	0.406	0.598	1e-50
Q96H96	371	4-hydroxybenzoate polypre	no	N/A	0.993	0.409	0.598	2e-50
Q54U71	463	4-hydroxybenzoate polypre	yes	N/A	0.986	0.326	0.552	2e-43
Q8I7J4	356	4-hydroxybenzoate polypre	yes	N/A	0.973	0.418	0.577	5e-41
Q93YP7	407	4-hydroxybenzoate polypre	no	N/A	0.980	0.368	0.593	1e-38

>sp|Q16QL3|COQ2_AEDAE 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Aedes aegypti GN=coq2 PE=3 SV=1

 Score =  223 bits (568), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 102/151 (67%), Positives = 126/151 (83%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MR+D+PIGSWLLFWPCGWSI+++A  GC PDL TL LFG GA IMRGAGCTIND+WD+DI
Sbjct: 123 MRIDRPIGSWLLFWPCGWSIALSAPAGCWPDLWTLTLFGAGAFIMRGAGCTINDMWDRDI 182

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D KV+RT++RPLV G +++ DA  FL  QLG GLLIL++LN Y+I+LG++SL  V +YPL
Sbjct: 183 DGKVARTRNRPLVAGELTSADAWFFLGAQLGVGLLILLELNWYSIVLGASSLGLVIIYPL 242

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCV 151
           MKR+THW QL LGMTFN+GAL+G+SA  G V
Sbjct: 243 MKRITHWPQLVLGMTFNWGALLGWSATQGSV 273

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.
Aedes aegypti (taxid: 7159)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 3EC: 9

>sp|Q298G6|COQ2_DROPS 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=coq2 PE=3 SV=1

 Score =  212 bits (539), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 100/152 (65%), Positives = 122/152 (80%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MR+D+PIG++LLFWPC WSI+++A  GC PDL  L LFG GA+IMRGAGCTINDLWDKDI
Sbjct: 90  MRIDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDI 149

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D+KV RT+ RPL +G IS  DAI+FL+ QL  GLL+LVQLN  +I+LG++SL  V  YPL
Sbjct: 150 DAKVERTRTRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGLVITYPL 209

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           MKRVT+W QL LGM FN+GAL+G+ A  G VN
Sbjct: 210 MKRVTYWPQLVLGMAFNWGALLGWCATQGSVN 241

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q9VHS7|COQ2_DROME 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila melanogaster GN=Coq2 PE=2 SV=1

 Score =  212 bits (539), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 100/152 (65%), Positives = 122/152 (80%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MR+D+PIG++LLFWPC WSI+++A  GC PDL  L LFG GA+IMRGAGCTINDLWDKDI
Sbjct: 84  MRIDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDI 143

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D+KV RT+ RPL +G IS  DAI+FL+ QL  GLL+LVQLN  +I+LG++SL  V  YPL
Sbjct: 144 DAKVERTRLRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGLVITYPL 203

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           MKRVT+W QL LGM FN+GAL+G+ A  G VN
Sbjct: 204 MKRVTYWPQLVLGMAFNWGALLGWCATQGSVN 235

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q2KIQ4|COQ2_BOVIN 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Bos taurus GN=COQ2 PE=2 SV=1

 Score =  203 bits (516), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 96/152 (63%), Positives = 119/152 (78%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MRLDKPIG+WLL+ PC WSI +AA PGCLPD + L+LFG GAV+MRGAGCTIND+WD+D 
Sbjct: 78  MRLDKPIGTWLLYLPCTWSIGLAADPGCLPDWYMLSLFGTGAVLMRGAGCTINDMWDRDY 137

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D KV+RT  RP+  G IST  + +FL GQL   L +L+ LN Y+I LG+ SLL VT YPL
Sbjct: 138 DKKVTRTASRPIAAGDISTFRSFVFLGGQLTLALGVLLCLNYYSIALGAASLLLVTTYPL 197

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           MKR+T+W QL LG+TFN+GAL+G+SAV G  +
Sbjct: 198 MKRITYWPQLALGLTFNWGALLGWSAVKGSCD 229

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q499N4|COQ2_RAT 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Rattus norvegicus GN=Coq2 PE=2 SV=1

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/152 (59%), Positives = 114/152 (75%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MRLDKPIG+WLL+ PC WSI +AA PGC PD + L+LFG GA++MRGAGCTIND+WD+D 
Sbjct: 78  MRLDKPIGTWLLYLPCTWSIGLAADPGCFPDWYMLSLFGTGAILMRGAGCTINDMWDRDF 137

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D KV RT +RP+  G IS   + +FL  QL   L +L+ LN Y+I +G+ SLL V  YPL
Sbjct: 138 DKKVERTANRPIAAGDISAFQSFVFLGAQLTLALGVLLHLNYYSIAMGAASLLLVVTYPL 197

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           MKRVT W QL LG+TFN+GAL+G+SAV G  +
Sbjct: 198 MKRVTFWPQLALGLTFNWGALLGWSAVKGSCD 229

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q66JT7|COQ2_MOUSE 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Mus musculus GN=Coq2 PE=2 SV=2

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/152 (59%), Positives = 117/152 (76%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MRLDKPIG+WLL+ PC WSI +AA PGC PD + L+LFG GA++MRGAGCTIND+WD+D 
Sbjct: 78  MRLDKPIGTWLLYLPCTWSIGLAADPGCFPDWYMLSLFGTGAILMRGAGCTINDMWDRDF 137

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D KV+RT +RP+  G IST  + +FL GQL   L +L+ LN Y+I +G+ SLL V  YPL
Sbjct: 138 DKKVTRTANRPIAAGDISTFQSFVFLGGQLTLALGVLLCLNYYSIAMGAASLLLVVTYPL 197

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           +KR+T W QL LG+TFN+GAL+G+SAV G  +
Sbjct: 198 VKRITFWPQLALGLTFNWGALLGWSAVKGSCD 229

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q96H96|COQ2_HUMAN 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Homo sapiens GN=COQ2 PE=1 SV=1

 Score =  197 bits (502), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 91/152 (59%), Positives = 118/152 (77%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MRLDKPIG+WLL+ PC WSI +AA PGC PD + L+LFG GA++MRGAGCTIND+WD+D 
Sbjct: 78  MRLDKPIGTWLLYLPCTWSIGLAAEPGCFPDWYMLSLFGTGAILMRGAGCTINDMWDQDY 137

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D KV+RT +RP+  G IST  + +FL GQL   L +L+ LN Y+I LG+ SLL V  YPL
Sbjct: 138 DKKVTRTANRPIAAGDISTFQSFVFLGGQLTLALGVLLCLNYYSIALGAGSLLLVITYPL 197

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           MKR+++W QL LG+TFN+GAL+G+SA+ G  +
Sbjct: 198 MKRISYWPQLALGLTFNWGALLGWSAIKGSCD 229

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q54U71|COQ2_DICDI 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Dictyostelium discoideum GN=coq2 PE=3 SV=1

 Score =  174 bits (441), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/152 (55%), Positives = 105/152 (69%), Gaps = 1/152 (0%)

Query: 2   RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDID 61
           R+DKPIG WLL +PC WSIS+AA  G  PDL T+ +FG+GA +MR AGC IND+ D   D
Sbjct: 176 RVDKPIGVWLLLYPCCWSISLAAPAGSFPDLKTMLVFGIGAYVMRSAGCVINDMADYKFD 235

Query: 62  SKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGL-LILVQLNLYTIILGSTSLLFVTLYPL 120
           SKV RTK RP+ +  ++   ++IFL GQL A   LIL  LN YTI L ++SL  V LYP 
Sbjct: 236 SKVERTKTRPIASKQLTHKQSLIFLGGQLLASFGLILSSLNYYTIALCASSLPIVVLYPF 295

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           MKR T++ Q  LG+ FN+GAL GYSA+ G  N
Sbjct: 296 MKRFTYYPQFVLGLAFNWGALAGYSAIAGSCN 327

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q8I7J4|COQ2_CAEEL 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Caenorhabditis elegans GN=coq-2 PE=2 SV=2

 Score =  166 bits (420), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 86/149 (57%), Positives = 110/149 (73%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MR+DKPIG+WLL+WPC WSI+MA   G LP ++ L+LFG GA +MR AGC INDLWDKD 
Sbjct: 69  MRVDKPIGTWLLYWPCTWSIAMATPAGQLPSIYMLSLFGAGAFLMRSAGCVINDLWDKDF 128

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D KV RTK RPL  GS++   AI  LAG L + L IL+QLN Y++ +G++S+  V  YPL
Sbjct: 129 DKKVERTKLRPLACGSLTEKQAIGLLAGLLSSSLAILLQLNWYSVAVGASSMALVVGYPL 188

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
            KR T+W Q  LG+TFN+GAL+G+ A+ G
Sbjct: 189 AKRFTYWPQFVLGLTFNWGALLGWCALKG 217

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q93YP7|4HPT_ARATH 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Arabidopsis thaliana GN=PPT1 PE=2 SV=1

 Score =  158 bits (400), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 113/150 (75%)

Query: 2   RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDID 61
           RLDKPIG+WLL WPC WSI++AA PG LP    +ALFG GA+++RGAGCTINDL D+DID
Sbjct: 132 RLDKPIGTWLLAWPCMWSIALAADPGSLPSFKYMALFGCGALLLRGAGCTINDLLDQDID 191

Query: 62  SKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLM 121
           +KV RTK RP+ +G ++    I FL  QL  GL IL+QLN Y+ +LG++SLL V  YPLM
Sbjct: 192 TKVDRTKLRPIASGLLTPFQGIGFLGLQLLLGLGILLQLNNYSRVLGASSLLLVFSYPLM 251

Query: 122 KRVTHWAQLTLGMTFNYGALMGYSAVTGCV 151
           KR T W Q  LG+T N+GAL+G++AV G +
Sbjct: 252 KRFTFWPQAFLGLTINWGALLGWTAVKGSI 281

Involved in coenzyme Q (CoQ) biosynthesis. Catalyzes the prenylation of para-hydroxybenzoate (PHB) with a polyprenyl group. Required for embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
270011210	294	hypothetical protein TcasGA2_TC030623 [T	0.993	0.517	0.684	4e-57
157128875	441	4-hydroxybenzoate octaprenyltransferase	0.986	0.342	0.675	2e-56
332373142	374	unknown [Dendroctonus ponderosae]	0.993	0.406	0.651	9e-56
170043503	315	para-hydroxybenzoate-polyprenyltransfera	0.993	0.482	0.671	2e-55
194903991	392	GG17457 [Drosophila erecta] gi|190652683	0.993	0.387	0.664	3e-53
125775189	397	GA21912 [Drosophila pseudoobscura pseudo	0.993	0.382	0.657	4e-53
195499070	392	GE24856 [Drosophila yakuba] gi|194182893	0.993	0.387	0.657	5e-53
21355567	392	coenzyme Q biosynthesis protein 2 [Droso	0.993	0.387	0.657	5e-53
195330736	365	GM26350 [Drosophila sechellia] gi|194121	0.993	0.416	0.657	5e-53
194744203	397	GF16669 [Drosophila ananassae] gi|190627	0.993	0.382	0.657	5e-53

>gi|270011210|gb|EFA07658.1| hypothetical protein TcasGA2_TC030623 [Tribolium castaneum]

 Score =  225 bits (574), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 125/152 (82%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MRLDKPIG+WLLFWPCGW I+ AA PGC PD + LALFG GAVIMRGAGCTIND+WD+DI
Sbjct: 1   MRLDKPIGTWLLFWPCGWGIASAAAPGCFPDPYMLALFGTGAVIMRGAGCTINDMWDRDI 60

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           DSKV+RTKDRPLVNG +S   A +FLAGQL  GL +L+QLN Y++ LG++S+  V  YPL
Sbjct: 61  DSKVARTKDRPLVNGDVSMKAAWVFLAGQLSLGLAVLLQLNWYSVFLGASSMGLVISYPL 120

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           MKR T+W QL LG+TFN+G L+GYSA+ G V+
Sbjct: 121 MKRFTYWPQLVLGLTFNWGVLLGYSAIKGHVD 152

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157128875|ref|XP_001661527.1| 4-hydroxybenzoate octaprenyltransferase [Aedes aegypti] gi|122116948|sp|Q16QL3.1|COQ2_AEDAE RecName: Full=4-hydroxybenzoate polyprenyltransferase, mitochondrial; AltName: Full=Coenzyme Q biosynthesis protein 2; AltName: Full=Para-hydroxybenzoate--polyprenyltransferase; Short=PHB:polyprenyltransferase; Flags: Precursor gi|108872455|gb|EAT36680.1| AAEL011249-PA [Aedes aegypti]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/151 (67%), Positives = 126/151 (83%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MR+D+PIGSWLLFWPCGWSI+++A  GC PDL TL LFG GA IMRGAGCTIND+WD+DI
Sbjct: 123 MRIDRPIGSWLLFWPCGWSIALSAPAGCWPDLWTLTLFGAGAFIMRGAGCTINDMWDRDI 182

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D KV+RT++RPLV G +++ DA  FL  QLG GLLIL++LN Y+I+LG++SL  V +YPL
Sbjct: 183 DGKVARTRNRPLVAGELTSADAWFFLGAQLGVGLLILLELNWYSIVLGASSLGLVIIYPL 242

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCV 151
           MKR+THW QL LGMTFN+GAL+G+SA  G V
Sbjct: 243 MKRITHWPQLVLGMTFNWGALLGWSATQGSV 273

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373142|gb|AEE61712.1| unknown [Dendroctonus ponderosae]

 Score =  221 bits (562), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 99/152 (65%), Positives = 124/152 (81%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MRLD+P+GSWLL+WP  W I+ AA PGC+PDL+ L L GLGAV+MRGAGCTIND+WD+DI
Sbjct: 78  MRLDRPVGSWLLYWPVSWGIASAASPGCIPDLYLLTLCGLGAVVMRGAGCTINDMWDRDI 137

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D+KV RTKDRPLVNG +S   A++FLA QL  GL +L+QLN Y+I LG++SL  V +YPL
Sbjct: 138 DAKVKRTKDRPLVNGDVSLQKAVVFLAAQLSVGLAVLLQLNWYSIELGASSLALVIVYPL 197

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           MKR T+W Q  LG+ FN+GAL+GYSAVTG ++
Sbjct: 198 MKRFTYWPQFVLGLAFNWGALLGYSAVTGSID 229

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043503|ref|XP_001849425.1| para-hydroxybenzoate-polyprenyltransferase, mitochondrial [Culex quinquefasciatus] gi|167866821|gb|EDS30204.1| para-hydroxybenzoate-polyprenyltransferase, mitochondrial [Culex quinquefasciatus]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/152 (67%), Positives = 126/152 (82%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MRLD+PIGSWLLFWPCGWSI+++A  GC PD   LALFG G+ IMRGAGCTIND+WD+DI
Sbjct: 1   MRLDRPIGSWLLFWPCGWSIALSAPAGCWPDPVMLALFGTGSFIMRGAGCTINDMWDRDI 60

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D+KV+RTK RPLV G ++  DA +FL GQL  GLL+L++LN Y+I+LG++SL  V +YPL
Sbjct: 61  DAKVARTKSRPLVAGELTQLDAWMFLGGQLAVGLLVLLELNWYSIVLGASSLGLVIVYPL 120

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           MKR+THW QL LGMTFN+GAL+G+SA TG V 
Sbjct: 121 MKRITHWPQLVLGMTFNWGALLGWSATTGSVE 152

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194903991|ref|XP_001980980.1| GG17457 [Drosophila erecta] gi|190652683|gb|EDV49938.1| GG17457 [Drosophila erecta]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/152 (66%), Positives = 122/152 (80%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MR+D+PIG++LLFWPC WSI+++A  GC PDL  L LFG GA+IMRGAGCTINDLWDKDI
Sbjct: 84  MRIDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDI 143

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D+KV RTK RPL +G IS  DAI+FL+ QL  GLL+LVQLN  +I+LG++SL  V  YPL
Sbjct: 144 DAKVERTKLRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGLVITYPL 203

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           MKRVT+W QL LGM FN+GAL+G+ A  G VN
Sbjct: 204 MKRVTYWPQLVLGMAFNWGALLGWCATQGSVN 235

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125775189|ref|XP_001358846.1| GA21912 [Drosophila pseudoobscura pseudoobscura] gi|121990981|sp|Q298G6.1|COQ2_DROPS RecName: Full=4-hydroxybenzoate polyprenyltransferase, mitochondrial; AltName: Full=Coenzyme Q biosynthesis protein 2; AltName: Full=Para-hydroxybenzoate--polyprenyltransferase; Short=PHB:polyprenyltransferase; Flags: Precursor gi|54638587|gb|EAL27989.1| GA21912 [Drosophila pseudoobscura pseudoobscura]

 Score =  212 bits (539), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 100/152 (65%), Positives = 122/152 (80%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MR+D+PIG++LLFWPC WSI+++A  GC PDL  L LFG GA+IMRGAGCTINDLWDKDI
Sbjct: 90  MRIDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDI 149

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D+KV RT+ RPL +G IS  DAI+FL+ QL  GLL+LVQLN  +I+LG++SL  V  YPL
Sbjct: 150 DAKVERTRTRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGLVITYPL 209

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           MKRVT+W QL LGM FN+GAL+G+ A  G VN
Sbjct: 210 MKRVTYWPQLVLGMAFNWGALLGWCATQGSVN 241

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195499070|ref|XP_002096792.1| GE24856 [Drosophila yakuba] gi|194182893|gb|EDW96504.1| GE24856 [Drosophila yakuba]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 100/152 (65%), Positives = 122/152 (80%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MR+D+PIG++LLFWPC WSI+++A  GC PDL  L LFG GA+IMRGAGCTINDLWDKDI
Sbjct: 84  MRIDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDI 143

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D+KV RT+ RPL +G IS  DAI+FL+ QL  GLL+LVQLN  +I+LG++SL  V  YPL
Sbjct: 144 DAKVERTRLRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGLVITYPL 203

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           MKRVT+W QL LGM FN+GAL+G+ A  G VN
Sbjct: 204 MKRVTYWPQLVLGMAFNWGALLGWCATQGSVN 235

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21355567|ref|NP_649789.1| coenzyme Q biosynthesis protein 2 [Drosophila melanogaster] gi|74869153|sp|Q9VHS7.1|COQ2_DROME RecName: Full=4-hydroxybenzoate polyprenyltransferase, mitochondrial; AltName: Full=Coenzyme Q biosynthesis protein 2; AltName: Full=Para-hydroxybenzoate--polyprenyltransferase; Short=PHB:polyprenyltransferase; Flags: Precursor gi|7299020|gb|AAF54222.1| coenzyme Q biosynthesis protein 2 [Drosophila melanogaster] gi|19527955|gb|AAL90092.1| AT17730p [Drosophila melanogaster] gi|220949886|gb|ACL87486.1| Coq2-PA [synthetic construct]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 100/152 (65%), Positives = 122/152 (80%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MR+D+PIG++LLFWPC WSI+++A  GC PDL  L LFG GA+IMRGAGCTINDLWDKDI
Sbjct: 84  MRIDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDI 143

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D+KV RT+ RPL +G IS  DAI+FL+ QL  GLL+LVQLN  +I+LG++SL  V  YPL
Sbjct: 144 DAKVERTRLRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGLVITYPL 203

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           MKRVT+W QL LGM FN+GAL+G+ A  G VN
Sbjct: 204 MKRVTYWPQLVLGMAFNWGALLGWCATQGSVN 235

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195330736|ref|XP_002032059.1| GM26350 [Drosophila sechellia] gi|194121002|gb|EDW43045.1| GM26350 [Drosophila sechellia]

 Score =  211 bits (538), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 100/152 (65%), Positives = 122/152 (80%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MR+D+PIG++LLFWPC WSI+++A  GC PDL  L LFG GA+IMRGAGCTINDLWDKDI
Sbjct: 57  MRIDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDI 116

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D+KV RT+ RPL +G IS  DAI+FL+ QL  GLL+LVQLN  +I+LG++SL  V  YPL
Sbjct: 117 DAKVERTRLRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGLVITYPL 176

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           MKRVT+W QL LGM FN+GAL+G+ A  G VN
Sbjct: 177 MKRVTYWPQLVLGMAFNWGALLGWCATQGSVN 208

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194744203|ref|XP_001954584.1| GF16669 [Drosophila ananassae] gi|190627621|gb|EDV43145.1| GF16669 [Drosophila ananassae]

 Score =  211 bits (538), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 100/152 (65%), Positives = 122/152 (80%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MR+D+PIG++LLFWPC WSI+++A  GC PDL  L LFG GA+IMRGAGCTINDLWDKDI
Sbjct: 91  MRIDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDI 150

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D+KV RT+ RPL +G IS  DAI+FL+ QL  GLL+LVQLN  +I+LG++SL  V  YPL
Sbjct: 151 DAKVERTRMRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWESILLGASSLGLVITYPL 210

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           MKRVT+W QL LGM FN+GAL+G+ A  G VN
Sbjct: 211 MKRVTYWPQLVLGMAFNWGALLGWCATQGSVN 242

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
UNIPROTKB|Q16QL3	441	coq2 "4-hydroxybenzoate polypr	0.986	0.342	0.589	2.6e-47
UNIPROTKB|F1N1G6	371	COQ2 "4-hydroxybenzoate polypr	0.973	0.401	0.583	1.9e-44
UNIPROTKB|Q2KIQ4	371	COQ2 "4-hydroxybenzoate polypr	0.973	0.401	0.583	1.9e-44
UNIPROTKB|E2QT06	368	COQ2 "Uncharacterized protein"	0.973	0.404	0.563	2.2e-43
ZFIN|ZDB-GENE-070410-84	378	coq2 "coenzyme Q2 homolog, pre	0.973	0.394	0.563	2.2e-43
UNIPROTKB|Q298G6	397	coq2 "4-hydroxybenzoate polypr	0.993	0.382	0.565	2.8e-43
UNIPROTKB|F1RVD9	371	COQ2 "Uncharacterized protein"	0.973	0.401	0.563	3.5e-43
FB|FBgn0037574	392	Coq2 "Coenzyme Q biosynthesis	0.993	0.387	0.565	5.7e-43
UNIPROTKB|F1NYJ7	328	COQ2 "Uncharacterized protein"	0.973	0.454	0.570	5.7e-43
RGD|1306722	374	Coq2 "coenzyme Q2 homolog, pre	0.973	0.398	0.557	5.7e-43

UNIPROTKB|Q16QL3 coq2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Aedes aegypti (taxid:7159)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 89/151 (58%), Positives = 111/151 (73%)

Query:     1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
             MR+D+PIGSWLLFWPCGWSI+++A  GC PDL TL LFG GA IMRGAGCTIND+WD+DI
Sbjct:   123 MRIDRPIGSWLLFWPCGWSIALSAPAGCWPDLWTLTLFGAGAFIMRGAGCTINDMWDRDI 182

Query:    61 DSKVSRTKDRPLVNGSISTTDXXXXXXXXXXXXXXXXXXXXXYTIILGSTSLLFVTLYPL 120
             D KV+RT++RPLV G +++ D                     Y+I+LG++SL  V +YPL
Sbjct:   183 DGKVARTRNRPLVAGELTSADAWFFLGAQLGVGLLILLELNWYSIVLGASSLGLVIIYPL 242

Query:   121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCV 151
             MKR+THW QL LGMTFN+GAL+G+SA  G V
Sbjct:   243 MKRITHWPQLVLGMTFNWGALLGWSATQGSV 273

GO:0005666 "DNA-directed RNA polymerase III complex" evidence=ISS

GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006360 "transcription from RNA polymerase I promoter" evidence=ISS

GO:0006383 "transcription from RNA polymerase III promoter" evidence=ISS

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

GO:0008412 "4-hydroxybenzoate octaprenyltransferase activity" evidence=ISS

GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS

UNIPROTKB|F1N1G6 COQ2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 87/149 (58%), Positives = 105/149 (70%)

Query:     1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
             MRLDKPIG+WLL+ PC WSI +AA PGCLPD + L+LFG GAV+MRGAGCTIND+WD+D 
Sbjct:    78 MRLDKPIGTWLLYLPCTWSIGLAADPGCLPDWYMLSLFGTGAVLMRGAGCTINDMWDRDY 137

Query:    61 DSKVSRTKDRPLVNGSISTTDXXXXXXXXXXXXXXXXXXXXXYTIILGSTSLLFVTLYPL 120
             D KV+RT  RP+  G IST                       Y+I LG+ SLL VT YPL
Sbjct:   138 DKKVTRTASRPIAAGDISTFRSFVFLGGQLTLALGVLLCLNYYSIALGAASLLLVTTYPL 197

Query:   121 MKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
             MKR+T+W QL LG+TFN+GAL+G+SAV G
Sbjct:   198 MKRITYWPQLALGLTFNWGALLGWSAVKG 226

GO:0006071 "glycerol metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

UNIPROTKB|Q2KIQ4 COQ2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 87/149 (58%), Positives = 105/149 (70%)

Query:     1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
             MRLDKPIG+WLL+ PC WSI +AA PGCLPD + L+LFG GAV+MRGAGCTIND+WD+D 
Sbjct:    78 MRLDKPIGTWLLYLPCTWSIGLAADPGCLPDWYMLSLFGTGAVLMRGAGCTINDMWDRDY 137

Query:    61 DSKVSRTKDRPLVNGSISTTDXXXXXXXXXXXXXXXXXXXXXYTIILGSTSLLFVTLYPL 120
             D KV+RT  RP+  G IST                       Y+I LG+ SLL VT YPL
Sbjct:   138 DKKVTRTASRPIAAGDISTFRSFVFLGGQLTLALGVLLCLNYYSIALGAASLLLVTTYPL 197

Query:   121 MKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
             MKR+T+W QL LG+TFN+GAL+G+SAV G
Sbjct:   198 MKRITYWPQLALGLTFNWGALLGWSAVKG 226

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0047293 "4-hydroxybenzoate nonaprenyltransferase activity" evidence=IEA

GO:0002083 "4-hydroxybenzoate decaprenyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

UNIPROTKB|E2QT06 COQ2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 84/149 (56%), Positives = 103/149 (69%)

Query:     1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
             MRLDKPIG+WLL+ PC WSI +AA PGC PD + L+LFG GAV+MRGAGCTIND+WD+D 
Sbjct:    76 MRLDKPIGTWLLYLPCTWSIGLAAEPGCFPDWYMLSLFGTGAVLMRGAGCTINDMWDRDY 135

Query:    61 DSKVSRTKDRPLVNGSISTTDXXXXXXXXXXXXXXXXXXXXXYTIILGSTSLLFVTLYPL 120
             D KV RT +RP+  G IST                       Y+I LG+ SLL V  YPL
Sbjct:   136 DKKVIRTANRPIAAGDISTFQSFIFLGGQLTLALGILLCLNYYSIALGAASLLLVITYPL 195

Query:   121 MKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
             MKR+T+W QL LG+TFN+GAL+G+SA+ G
Sbjct:   196 MKRITYWPQLALGLTFNWGALLGWSAIKG 224

GO:0006071 "glycerol metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-070410-84 coq2 "coenzyme Q2 homolog, prenyltransferase (yeast)" [Danio rerio (taxid:7955)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 84/149 (56%), Positives = 102/149 (68%)

Query:     1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
             MRLDKPIG+WLL+ PC WSI +AA PGCLPDL  L LFG+GA++MRGAGCTIND+WDKD 
Sbjct:    86 MRLDKPIGTWLLYLPCTWSIGLAADPGCLPDLRMLTLFGVGALLMRGAGCTINDMWDKDF 145

Query:    61 DSKVSRTKDRPLVNGSISTTDXXXXXXXXXXXXXXXXXXXXXYTIILGSTSLLFVTLYPL 120
             D KVSRT  RP+ +G I+                        Y+I LG+ SL  V  YPL
Sbjct:   146 DKKVSRTATRPIASGDITRFQALVFLGGQLSLALGVLLSLNYYSIALGAASLSLVVTYPL 205

Query:   121 MKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
             MKR+T+W Q  LG+TFN+GAL+G+SAV G
Sbjct:   206 MKRITYWPQFILGLTFNWGALLGWSAVKG 234

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|Q298G6 coq2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 86/152 (56%), Positives = 105/152 (69%)

Query:     1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
             MR+D+PIG++LLFWPC WSI+++A  GC PDL  L LFG GA+IMRGAGCTINDLWDKDI
Sbjct:    90 MRIDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDI 149

Query:    61 DSKVSRTKDRPLVNGSISTTDXXXXXXXXXXXXXXXXXXXXXYTIILGSTSLLFVTLYPL 120
             D+KV RT+ RPL +G IS  D                      +I+LG++SL  V  YPL
Sbjct:   150 DAKVERTRTRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGLVITYPL 209

Query:   121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
             MKRVT+W QL LGM FN+GAL+G+ A  G VN
Sbjct:   210 MKRVTYWPQLVLGMAFNWGALLGWCATQGSVN 241

GO:0005666 "DNA-directed RNA polymerase III complex" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006383 "transcription from RNA polymerase III promoter" evidence=ISS

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

GO:0008412 "4-hydroxybenzoate octaprenyltransferase activity" evidence=ISS

GO:0016094 "polyprenol biosynthetic process" evidence=ISS

GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS

UNIPROTKB|F1RVD9 COQ2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 84/149 (56%), Positives = 103/149 (69%)

Query:     1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
             MRLDKPIG+WLL+ PC WSI +AA PGC PD   L+LFG GAV+MRGAGCTIND+WD+D 
Sbjct:    78 MRLDKPIGTWLLYLPCTWSIGLAAEPGCFPDWCMLSLFGTGAVLMRGAGCTINDMWDQDY 137

Query:    61 DSKVSRTKDRPLVNGSISTTDXXXXXXXXXXXXXXXXXXXXXYTIILGSTSLLFVTLYPL 120
             D KV+RT  RP+  G IST                       Y+I LG++SLL V  YPL
Sbjct:   138 DKKVTRTASRPIAAGDISTFQSFVFLGAQLTLALGVLLCLNHYSIALGASSLLLVITYPL 197

Query:   121 MKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
             MKR+T+W QL LG+TFN+GAL+G+SA+ G
Sbjct:   198 MKRITYWPQLALGLTFNWGALLGWSAIKG 226

GO:0006071 "glycerol metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

FB|FBgn0037574 Coq2 "Coenzyme Q biosynthesis protein 2" [Drosophila melanogaster (taxid:7227)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 86/152 (56%), Positives = 105/152 (69%)

Query:     1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
             MR+D+PIG++LLFWPC WSI+++A  GC PDL  L LFG GA+IMRGAGCTINDLWDKDI
Sbjct:    84 MRIDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDI 143

Query:    61 DSKVSRTKDRPLVNGSISTTDXXXXXXXXXXXXXXXXXXXXXYTIILGSTSLLFVTLYPL 120
             D+KV RT+ RPL +G IS  D                      +I+LG++SL  V  YPL
Sbjct:   144 DAKVERTRLRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGLVITYPL 203

Query:   121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
             MKRVT+W QL LGM FN+GAL+G+ A  G VN
Sbjct:   204 MKRVTYWPQLVLGMAFNWGALLGWCATQGSVN 235

GO:0008412 "4-hydroxybenzoate octaprenyltransferase activity" evidence=ISS

GO:0006743 "ubiquinone metabolic process" evidence=ISS

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IDA

GO:0048009 "insulin-like growth factor receptor signaling pathway" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0050830 "defense response to Gram-positive bacterium" evidence=IMP

GO:0050829 "defense response to Gram-negative bacterium" evidence=IMP

UNIPROTKB|F1NYJ7 COQ2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 85/149 (57%), Positives = 102/149 (68%)

Query:     1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
             MRL +P G+WLL+ PC WSI +AA PGCLPD H LALFG GAV+MRGAGCTINDLWD+D 
Sbjct:    38 MRLHQPAGTWLLYLPCTWSIGLAAEPGCLPDWHMLALFGAGAVLMRGAGCTINDLWDRDY 97

Query:    61 DSKVSRTKDRPLVNGSISTTDXXXXXXXXXXXXXXXXXXXXXYTIILGSTSLLFVTLYPL 120
             D +V+RT  RPL  G IST                       Y+IILG+ SL  V  YPL
Sbjct:    98 DKQVARTAGRPLAAGEISTFQSFVFLGGQLSLALCVLLCLNYYSIILGAASLSLVVTYPL 157

Query:   121 MKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
             MKR+T+W QL LG+TFN+GAL+G+SA+ G
Sbjct:   158 MKRITYWPQLVLGLTFNWGALLGWSAIHG 186

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006071 "glycerol metabolic process" evidence=IEA

RGD|1306722 Coq2 "coenzyme Q2 homolog, prenyltransferase (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 83/149 (55%), Positives = 101/149 (67%)

Query:     1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
             MRLDKPIG+WLL+ PC WSI +AA PGC PD + L+LFG GA++MRGAGCTIND+WD+D 
Sbjct:    78 MRLDKPIGTWLLYLPCTWSIGLAADPGCFPDWYMLSLFGTGAILMRGAGCTINDMWDRDF 137

Query:    61 DSKVSRTKDRPLVNGSISTTDXXXXXXXXXXXXXXXXXXXXXYTIILGSTSLLFVTLYPL 120
             D KV RT +RP+  G IS                        Y+I +G+ SLL V  YPL
Sbjct:   138 DKKVERTANRPIAAGDISAFQSFVFLGAQLTLALGVLLHLNYYSIAMGAASLLLVVTYPL 197

Query:   121 MKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
             MKRVT W QL LG+TFN+GAL+G+SAV G
Sbjct:   198 MKRVTFWPQLALGLTFNWGALLGWSAVKG 226

GO:0002083 "4-hydroxybenzoate decaprenyltransferase activity" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006071 "glycerol metabolic process" evidence=IEA;ISO

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA;ISO

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0047293 "4-hydroxybenzoate nonaprenyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2KIQ4	COQ2_BOVIN	2, ., 5, ., 1, ., 3, 9	0.6315	0.9934	0.4097	yes	N/A
Q499N4	COQ2_RAT	2, ., 5, ., 1, ., 3, 9	0.5986	0.9934	0.4064	yes	N/A
Q54U71	COQ2_DICDI	2, ., 5, ., 1, ., 3, 9	0.5526	0.9869	0.3261	yes	N/A
Q298G6	COQ2_DROPS	2, ., 5, ., 1, ., 3, 9	0.6578	0.9934	0.3828	yes	N/A
Q8I7J4	COQ2_CAEEL	2, ., 5, ., 1, ., 3, 9	0.5771	0.9738	0.4185	yes	N/A
Q66JT7	COQ2_MOUSE	2, ., 5, ., 1, ., 3, 9	0.5986	0.9934	0.4064	yes	N/A
Q9VHS7	COQ2_DROME	2, ., 5, ., 1, ., 3, 9	0.6578	0.9934	0.3877	yes	N/A
Q10252	COQ2_SCHPO	2, ., 5, ., 1, ., 3, 9	0.5128	0.9869	0.4194	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	153
PLN02809	289	PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltr	5e-76
TIGR01474	281	TIGR01474, ubiA_proteo, 4-hydroxybenzoate polypren	4e-65
PRK12878	314	PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransf	5e-57
PRK12847	285	PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransf	3e-55
PRK12848	282	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransf	6e-54
PRK12870	290	PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransf	8e-44
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	6e-38
PRK12873	294	PRK12873, ubiA, prenyltransferase; Reviewed	3e-23
TIGR01475	282	TIGR01475, ubiA_other, putative 4-hydroxybenzoate	4e-19
PRK13106	300	PRK13106, ubiA, prenyltransferase; Reviewed	5e-15
COG0109	304	COG0109, CyoE, Polyprenyltransferase (cytochrome o	1e-14
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	2e-14
PRK04375	296	PRK04375, PRK04375, protoheme IX farnesyltransfera	4e-14
TIGR01473	280	TIGR01473, cyoE_ctaB, protoheme IX farnesyltransfe	2e-13
PRK13362	306	PRK13362, PRK13362, protoheme IX farnesyltransfera	5e-10
PRK12886	291	PRK12886, ubiA, prenyltransferase; Reviewed	5e-08
PRK12874	291	PRK12874, ubiA, prenyltransferase; Reviewed	2e-07
PRK12869	279	PRK12869, ubiA, protoheme IX farnesyltransferase;	7e-07
PRK12888	284	PRK12888, ubiA, prenyltransferase; Reviewed	1e-06
PRK12876	300	PRK12876, ubiA, prenyltransferase; Reviewed	2e-06
PRK12895	286	PRK12895, ubiA, prenyltransferase; Reviewed	3e-06
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	5e-06
PLN02776	341	PLN02776, PLN02776, prenyltransferase	4e-05
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	8e-05
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	5e-04

>gnl|CDD|178405 PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltransferase

 Score =  227 bits (581), Expect = 5e-76
 Identities = 93/152 (61%), Positives = 117/152 (76%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
            RLDKPIG+WLL WPC WSI++AA PG LPDL  LALFG GA+++RGAGCTINDL D+DI
Sbjct: 13  ARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKMLALFGCGALLLRGAGCTINDLLDRDI 72

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D KV RTK RP+ +G+++    + FL  QL  GL IL+QLN Y+ ILG++SLL V  YPL
Sbjct: 73  DKKVERTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGASSLLLVFTYPL 132

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           MKR T W Q  LG+TFN+GAL+G++AV G ++
Sbjct: 133 MKRFTFWPQAFLGLTFNWGALLGWAAVKGSLD 164

Length = 289

>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase, proteobacterial

 Score =  199 bits (508), Expect = 4e-65
 Identities = 85/149 (57%), Positives = 109/149 (73%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MR DKPIG+ LL WPC WS+ +AA  G +P L+ L LF +GA++MRGAGC IND+WD+D 
Sbjct: 8   MRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVGAILMRGAGCVINDIWDRDF 67

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D +V RTK RPL +G++S   AI+FL  QL   L +L+QLN  TI+LG  SL  V  YP 
Sbjct: 68  DPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVASLALVATYPF 127

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
           MKR+T+W QL LG+ F +GALMG++AVTG
Sbjct: 128 MKRITYWPQLVLGLAFGWGALMGWAAVTG 156

This model represents a family of integral membrane proteins that condenses para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for, many but not all members, the activity seen (e.g. octaprenyltransferase in E. coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 281

>gnl|CDD|183808 PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score =  180 bits (458), Expect = 5e-57
 Identities = 76/151 (50%), Positives = 99/151 (65%), Gaps = 3/151 (1%)

Query: 2   RLDKPIGSWLLFWPCGWSISMAA---VPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDK 58
           R D+PIG WLL WPC WS ++AA       L  L  L LF +GA+ MRGAGCT ND+ D+
Sbjct: 38  RWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVGAIAMRGAGCTYNDIVDR 97

Query: 59  DIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLY 118
           DID+KV+RT+ RPL +G +S   A +F+  Q   GL +L+Q N + I LG  SL  V  Y
Sbjct: 98  DIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIASLAIVAAY 157

Query: 119 PLMKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
           P MKR+T W Q  LG+ F++GALMG++A  G
Sbjct: 158 PFMKRITWWPQFFLGLAFSWGALMGWAAHFG 188

Length = 314

>gnl|CDD|237228 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score =  174 bits (444), Expect = 3e-55
 Identities = 71/149 (47%), Positives = 99/149 (66%), Gaps = 1/149 (0%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MRL KPIG  L+F+P  + + +A+    LPD+  L LF +G+V+MR AGC IND++D+ I
Sbjct: 14  MRLHKPIGILLVFFPTLFGLLLAS-HSLLPDISLLVLFIIGSVLMRSAGCIINDIFDRKI 72

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D  V+RTK+RPL +G++S   A+I L   L   L+IL+ LN  TI L   +++ + LYPL
Sbjct: 73  DKHVARTKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFIAVILIVLYPL 132

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
           MKR  +W QL LG TFN G LM ++AV  
Sbjct: 133 MKRFFYWPQLFLGFTFNMGILMAFAAVQN 161

Length = 285

>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed

 Score =  171 bits (435), Expect = 6e-54
 Identities = 67/152 (44%), Positives = 91/152 (59%), Gaps = 2/152 (1%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           MRLDKPIG+ LL WP  W++ +AA    +PDL  L +F LG  +MR AGC IND  D+D 
Sbjct: 12  MRLDKPIGTLLLLWPTLWALWLAA--DGIPDLWVLVVFVLGVFLMRAAGCVINDYADRDF 69

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D  V RTK+RPL +G++S  +A+      +    L+++ LN  TI L   +L    +YP 
Sbjct: 70  DGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVAALALAWIYPF 129

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           MKR TH  Q+ LG  F +G  M ++AV G V 
Sbjct: 130 MKRYTHLPQVVLGAAFGWGIPMAFAAVQGSVP 161

Length = 282

>gnl|CDD|237240 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score =  145 bits (368), Expect = 8e-44
 Identities = 55/148 (37%), Positives = 79/148 (53%), Gaps = 2/148 (1%)

Query: 2   RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDID 61
           R DKP G  +L  P  W++ +AA    LP L  + +  LGA+    AGC +NDLWD+DID
Sbjct: 17  RWDKPAGRLILMIPALWAVFLAA--HGLPPLPLVGIIILGALATSAAGCVVNDLWDRDID 74

Query: 62  SKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLM 121
            +V RT+ RPL +  +S    I+     L     +   LN  +  L   ++  + LYPL 
Sbjct: 75  PQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVAAVPVIFLYPLA 134

Query: 122 KRVTHWAQLTLGMTFNYGALMGYSAVTG 149
           KRV    QL L + + +  L+ +SAVTG
Sbjct: 135 KRVFPVPQLVLAIAWGFAVLISWSAVTG 162

Length = 290

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score =  130 bits (328), Expect = 6e-38
 Identities = 59/149 (39%), Positives = 81/149 (54%), Gaps = 2/149 (1%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           +RLD+PI + LL  P    + +AA    LP L  L L  L   + R AG  INDL D++I
Sbjct: 17  LRLDRPIFNLLLLLPALLGLLLAA--SGLPSLKLLLLAFLAFFLARSAGYVINDLADREI 74

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL 120
           D    RTK+RPL +G +S  +A++     L  GL + + LN    +L   +L+    YP 
Sbjct: 75  DRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAYPF 134

Query: 121 MKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
           +KR T   QL LG+ F  GAL G +AV G
Sbjct: 135 LKRFTFLPQLVLGLAFGLGALAGAAAVGG 163

Length = 289

>gnl|CDD|171787 PRK12873, ubiA, prenyltransferase; Reviewed

 Score = 92.0 bits (229), Expect = 3e-23
 Identities = 55/156 (35%), Positives = 79/156 (50%), Gaps = 6/156 (3%)

Query: 1   MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDI 60
           +R +KP G  +L  P GWS+ +   P   P L  L L  LG + + GAGC  NDLWD+ I
Sbjct: 14  LRWNKPTGRLILLIPAGWSLWLT--PSAPPSLLLLLLIILGGLAVSGAGCIANDLWDRRI 71

Query: 61  DSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQL----NLYTIILGSTSLLFVT 116
           D KV RTK+RPL  G IS   A   L   L   L +++ L        + L   +L  + 
Sbjct: 72  DRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPIL 131

Query: 117 LYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
           +YP  KR   + Q  L + + +  L+ ++A  G +N
Sbjct: 132 IYPSAKRWFAYPQAILALCWGFAVLIPWAAAEGSLN 167

Length = 294

>gnl|CDD|233429 TIGR01475, ubiA_other, putative 4-hydroxybenzoate polyprenyltransferase

 Score = 80.9 bits (200), Expect = 4e-19
 Identities = 46/121 (38%), Positives = 59/121 (48%)

Query: 29  LPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAG 88
           LP L TL L  + AV  R A    N + D+ ID++  RTK+RPLV+G IS  +A   +  
Sbjct: 32  LPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIIL 91

Query: 89  QLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVT 148
            L   L     LN    IL    LL + +YP  KR T      LG T+    L G+ AV 
Sbjct: 92  SLALFLSASYFLNPLAFILSPLVLLVLIIYPYTKRFTFLCHYVLGSTYGLAPLAGWVAVI 151

Query: 149 G 149
           G
Sbjct: 152 G 152

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 282

>gnl|CDD|237283 PRK13106, ubiA, prenyltransferase; Reviewed

 Score = 69.8 bits (171), Expect = 5e-15
 Identities = 40/120 (33%), Positives = 56/120 (46%)

Query: 30  PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQ 89
           P + TL L  L    +R AG T ++L D +ID+K  RTK+RPLV G+I  ++A   +   
Sbjct: 46  PPISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALITAG 105

Query: 90  LGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
           L         +N + ++L     L    YP MKR T +A   L          G  AV G
Sbjct: 106 LILFFASAYLVNRWALLLSPIVALIAMSYPYMKRYTAFANYHLASIQGLAVFSGAVAVLG 165

Length = 300

>gnl|CDD|223187 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

 Score = 68.8 bits (169), Expect = 1e-14
 Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 3/133 (2%)

Query: 20  ISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSIST 79
             M   P    +   L L  LG  +  G     N   D+DID+ + RT+ RPLV G IS 
Sbjct: 39  AGMLLAPRGSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISP 98

Query: 80  TDAIIFLAGQLGAGLLIL-VQLNLYTIILGSTSLLF-VTLY-PLMKRVTHWAQLTLGMTF 136
            +A+ F      AG  +L   +NL   +LG   + F V +Y   +KR T    +  G   
Sbjct: 99  REALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAG 158

Query: 137 NYGALMGYSAVTG 149
               L+G++AVTG
Sbjct: 159 AMPPLIGWAAVTG 171

Length = 304

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 67.5 bits (165), Expect = 2e-14
 Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 4/143 (2%)

Query: 10  WLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKD 69
             L      +    A  G L  L  L L  L  ++++ AG  +ND +D +ID+      D
Sbjct: 1   LPLALLPVLAGLALAAGGVLDLLLLLLLL-LALLLLQAAGNVLNDYFDYEIDADNPNKPD 59

Query: 70  RPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL---MKRVTH 126
           RPL +G IS  +A++     L  GLL+ + L    ++LG   LL   LY     +KR   
Sbjct: 60  RPLPSGRISPREALLLGLALLLLGLLLALLLGPLLLLLGLLGLLLGLLYSPPLRLKRRPL 119

Query: 127 WAQLTLGMTFNYGALMGYSAVTG 149
             +L +G+ F    L+G  AV G
Sbjct: 120 LGELVVGLAFGLLILLGAYAVGG 142

Length = 259

>gnl|CDD|235293 PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional

 Score = 67.5 bits (166), Expect = 4e-14
 Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 20  ISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSIST 79
             M   P  +P L  L L  LG  ++ GA   +N+  D+DID+K+ RTK+RPLV G IS 
Sbjct: 31  GGMLLAPPGVPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISP 90

Query: 80  TDAIIFLAGQLGAGLLILVQL-NLYTIILGSTSLLF-VTLYPL-MKRVTHWAQLTLGMTF 136
            +A+IF       G L+L    N     L    + F V +Y L +KR T    +  G   
Sbjct: 91  REALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAA- 149

Query: 137 NYGA---LMGYSAVTG 149
             GA   L+G++AVTG
Sbjct: 150 --GAMPPLIGWAAVTG 163

Length = 296

>gnl|CDD|233428 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase

 Score = 65.3 bits (160), Expect = 2e-13
 Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 3/129 (2%)

Query: 24  AVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAI 83
           A  G L +   L L  LG  +   +    N   D+DID K+ RT++RPLV G IS  +A+
Sbjct: 26  APGGALVNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREAL 85

Query: 84  IFLAGQLGAGLLIL-VQLNLYTIILGSTSLLF-VTLY-PLMKRVTHWAQLTLGMTFNYGA 140
            F       G+ IL   +N    +LG   + F V +Y   +KR T    +  G       
Sbjct: 86  AFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPP 145

Query: 141 LMGYSAVTG 149
           L+G++AVTG
Sbjct: 146 LIGWAAVTG 154

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 280

>gnl|CDD|184001 PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 11/120 (9%)

Query: 36  ALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIF--LAGQLGAG 93
           A+ GL  V+   +GC +N+  D+DID+K+ RT++R  V G IS  +A+ F    G  G G
Sbjct: 52  AVIGLSLVV--ASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGFG 109

Query: 94  LLILVQLNLYTIILGSTSLLFVTLYPL-MKRVTHWAQLTLGMTFNYGAL---MGYSAVTG 149
           LL      L  +      +++V +Y L +KR + +  L   ++   GA+   +GY AVTG
Sbjct: 110 LLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLS---GAMPPVVGYCAVTG 166

Length = 306

>gnl|CDD|237247 PRK12886, ubiA, prenyltransferase; Reviewed

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 37/121 (30%), Positives = 50/121 (41%)

Query: 29  LPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAG 88
           LP    L    +  V  R A    N L D +ID++  RT  R +  G IS   AI+F+  
Sbjct: 38  LPGASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILFIVL 97

Query: 89  QLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVT 148
                L     LN   + L   +L F+ LY   KR T  A + LG       L  + A+ 
Sbjct: 98  SSLLMLFAAWFLNPLCLYLSPPALFFLLLYSYCKRFTALAHVVLGFCLALAPLGAWIAIR 157

Query: 149 G 149
           G
Sbjct: 158 G 158

Length = 291

>gnl|CDD|237242 PRK12874, ubiA, prenyltransferase; Reviewed

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 4/118 (3%)

Query: 34  TLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAG 93
            L L  L AV  R      N L D+DID    RT +RP V+G IS    ++F+   L A 
Sbjct: 48  LLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIV--LNAL 105

Query: 94  LLILVQ--LNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
           + I V   +N     L    L+ +  Y   KR +  A L LG++     + G  AV G
Sbjct: 106 IFIGVSYFINPLAFKLSFPFLIVLGGYSYFKRFSSLAHLVLGLSLGLAPIAGVVAVLG 163

Length = 291

>gnl|CDD|237239 PRK12869, ubiA, protoheme IX farnesyltransferase; Reviewed

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 40  LGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLI-LV 98
           +G  +  G     N   ++DID  +SRT  RP   G ++  +A+   +     G  +  +
Sbjct: 43  IGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGTALGFL 102

Query: 99  QLNLYT---IILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN 152
            L   T   I LG      V     +K  T    +  G   N  AL GY++ TG ++
Sbjct: 103 LLGPLTALFIALGWFFYAVVYTI-WLKPRTWLNIVIGGFAGNAAALAGYASGTGSLD 158

Length = 279

>gnl|CDD|183814 PRK12888, ubiA, prenyltransferase; Reviewed

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 33/115 (28%), Positives = 51/115 (44%)

Query: 35  LALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGL 94
           L L  +  V  R      N + D++ID++  RT  R LV G++S   A       L   L
Sbjct: 41  LLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALVALAVFL 100

Query: 95  LILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTG 149
                LN   + L   ++  + +YP  KR T++    LG+    G +  + AVTG
Sbjct: 101 GAAALLNPLCLALAPLAVAPLVVYPYAKRFTNFPHAILGLAQAVGPVGAWIAVTG 155

Length = 284

>gnl|CDD|237244 PRK12876, ubiA, prenyltransferase; Reviewed

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 33/114 (28%), Positives = 48/114 (42%)

Query: 34  TLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAG 93
           T++L G      R  G  +N + D  ID K  RT  R L    +S   +++ L       
Sbjct: 48  TISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLTLCSFLF 107

Query: 94  LLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAV 147
           L +   LN     L   S L + +YP  KRVT      LG+ +    LM + A+
Sbjct: 108 LSLCWLLNPLCFSLAVLSTLLMIIYPYTKRVTFLCHWILGLVYYLAILMNFFAI 161

Length = 300

>gnl|CDD|237251 PRK12895, ubiA, prenyltransferase; Reviewed

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 32/108 (29%), Positives = 45/108 (41%)

Query: 40  LGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQ 99
           + AV  R +  +IN +     D    R KD  LV+G I   +AI F    +    +    
Sbjct: 44  IAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIFEICTFL 103

Query: 100 LNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAV 147
           LN    IL    +    + P +KR T W  + +G     G L GY AV
Sbjct: 104 LNRLVFILSPIVIFLFIIDPFLKRYTAWRHIYMGSIIGLGVLAGYLAV 151

Length = 286

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 18/135 (13%)

Query: 27  GCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFL 86
           G +P + TL L  L   +    G TIND +D +ID K++R  +RPL  G++S   A+ + 
Sbjct: 31  GGIPPIKTLILIFLVVYLGCSGGNTINDYFDYEID-KINR-PNRPLPRGAMSRKAALYYS 88

Query: 87  AGQLGAGLLILVQLNLYTIILGSTSLLFVTLY-------PLMKRVTHWAQLTLGMTFNYG 139
                 GL +   +N+   +    + + + LY       P +  V   A LT G T  YG
Sbjct: 89  LLLFAVGLALAYLINIEAFLFALGAYVLMFLYAWKLKPLPFIGNVV-VALLT-GATPIYG 146

Query: 140 A-------LMGYSAV 147
           A       L GY A+
Sbjct: 147 AIAVGRIGLAGYLAI 161

Length = 277

>gnl|CDD|215415 PLN02776, PLN02776, prenyltransferase

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 10/125 (8%)

Query: 31  DLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIF--LAG 88
           DL  L     G ++   +  T+N +++   DSK+ RT  RPL +G IS   A+ +  + G
Sbjct: 27  DLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVG 86

Query: 89  QLGAGLLILVQLNLYTIILGSTSL-LFVTLYPLMKRVTHWAQLTLGMTFNYGA---LMGY 144
             G  LL   + N+ T  LG+ ++ L+  +Y  +K++ H A   +G     GA   LMG+
Sbjct: 87  AAGVALLAY-KTNMLTAGLGAGNILLYAFVYTPLKQI-HPANTWVGAVV--GAIPPLMGW 142

Query: 145 SAVTG 149
           +A +G
Sbjct: 143 AAASG 147

Length = 341

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 47  GAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTII 106
             G  IND++D +ID K+++  +RP+ +G IS  +A IF       GL++ + +N+Y  +
Sbjct: 51  AGGNVINDIYDIEID-KINK-PERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFL 108

Query: 107 LGSTSLLFVTLY 118
           +   + + + LY
Sbjct: 109 IALLNSILLYLY 120

Length = 279

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 30  PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQ 89
               T   F    +   GAG  IND +D++ID +++R  DRP+ +G++S   A+ F    
Sbjct: 36  SPSLTGLAFAAVFLAT-GAGNAINDYFDREID-RINR-PDRPIPSGAVSPRGALAFSILL 92

Query: 90  LGAGLLILVQLNLYTIILGSTSLLFVTLY 118
             AG+ +   L    + +   + L + LY
Sbjct: 93  FAAGVALAFLLPPLCLAIALFNSLLLVLY 121

Length = 276

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PLN02776	341	prenyltransferase	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
PRK13362	306	protoheme IX farnesyltransferase; Provisional	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	100.0
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.98
PRK12876	300	ubiA prenyltransferase; Reviewed	99.98
KOG1381|consensus	353		99.96
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.96
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.96
PRK08238	479	hypothetical protein; Validated	99.95
PRK12884	279	ubiA prenyltransferase; Reviewed	99.95
PRK12882	276	ubiA prenyltransferase; Reviewed	99.94
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.94
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.93
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.93
KOG1380|consensus	409		99.92
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.92
PRK12871	297	ubiA prenyltransferase; Reviewed	99.92
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.91
PLN00012	375	chlorophyll synthetase; Provisional	99.91
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.9
PRK05951	296	ubiA prenyltransferase; Reviewed	99.9
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.88
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.87
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	99.87
PRK13595	292	ubiA prenyltransferase; Provisional	99.86
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.84
PRK13592	299	ubiA prenyltransferase; Provisional	99.79
PRK12875	282	ubiA prenyltransferase; Reviewed	99.79
PRK13105	282	ubiA prenyltransferase; Reviewed	99.79
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.78
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.76
PLN02922	315	prenyltransferase	99.74
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.73
PLN02878	280	homogentisate phytyltransferase	99.72
PRK12872	285	ubiA prenyltransferase; Reviewed	99.61
PRK13591	307	ubiA prenyltransferase; Provisional	99.4
KOG4581|consensus	359		98.31
PRK13105	282	ubiA prenyltransferase; Reviewed	96.34
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	96.32
PRK12872	285	ubiA prenyltransferase; Reviewed	95.97
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	95.3
PRK12871	297	ubiA prenyltransferase; Reviewed	95.1
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	95.07
PRK12875	282	ubiA prenyltransferase; Reviewed	95.05
PRK12884	279	ubiA prenyltransferase; Reviewed	95.02
PRK12874	291	ubiA prenyltransferase; Reviewed	94.97
PLN02922	315	prenyltransferase	94.96
PRK12888	284	ubiA prenyltransferase; Reviewed	94.88
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	94.81
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	94.77
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	94.53
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	94.41
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	94.37
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	94.3
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	93.92
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	93.88
PLN00012	375	chlorophyll synthetase; Provisional	93.72
PRK13591	307	ubiA prenyltransferase; Provisional	93.61
PRK12882	276	ubiA prenyltransferase; Reviewed	93.5
PRK13106	300	ubiA prenyltransferase; Reviewed	92.79
PRK12895	286	ubiA prenyltransferase; Reviewed	92.72
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	92.58
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	92.48
PRK12392	331	bacteriochlorophyll c synthase; Provisional	92.35
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	92.27
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	92.26
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	91.75
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	91.37
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	91.3
PRK05951	296	ubiA prenyltransferase; Reviewed	91.18
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	89.94
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	87.78
PRK12886	291	ubiA prenyltransferase; Reviewed	87.61
PRK13595	292	ubiA prenyltransferase; Provisional	87.09
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	85.51
PRK04375	296	protoheme IX farnesyltransferase; Provisional	84.98
PRK12873	294	ubiA prenyltransferase; Reviewed	83.85
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	83.05
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	81.63

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=2.7e-36  Score=243.50  Aligned_cols=153  Identities=61%  Similarity=1.070  Sum_probs=142.0

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT   80 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~   80 (153)
                      +|++||+.++++.+|+.+|..+++..+..+++..+++..++.+++++++|++||++|+|+|++|+||++||+|+|++|++
T Consensus        13 ~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~   92 (289)
T PLN02809         13 ARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPF   92 (289)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHH
Confidence            58999999999999999999988632334677778889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCCC
Q psy1910          81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE  153 (153)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~~  153 (153)
                      ||+.+..++.++++.+++..|+.++.++..+.++...||++||+++++|+++|+.+++++++||.+++|++++
T Consensus        93 ~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~l~g~~av~g~~~~  165 (289)
T PLN02809         93 QGVGFLGAQLLLGLGILLQLNNYSRILGASSLLLVFTYPLMKRFTFWPQAFLGLTFNWGALLGWAAVKGSLDP  165 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHhcCcchHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999999999999999999888999999999999999999999999999999999998763

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.6e-35  Score=239.03  Aligned_cols=151  Identities=36%  Similarity=0.626  Sum_probs=138.8

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT   80 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~   80 (153)
                      ||++||+..++.++|..+|..++..  ..+++...++.+++.+++++++|++||++|+|+|++|+||++||+|+|++|++
T Consensus        14 ~R~~Kp~~~~ll~~p~~~g~~la~~--~~~~~~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~   91 (294)
T PRK12873         14 LRWNKPTGRLILLIPAGWSLWLTPS--APPSLLLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLK   91 (294)
T ss_pred             hCccccchHHHHHHHHHHHHHHccC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHH
Confidence            6889999999999999999777643  23667778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCCC
Q psy1910          81 DAIIFLAGQLGAGLLILVQL----NLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE  153 (153)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~~  153 (153)
                      ||+.++.++..+++..++..    |+.++.++..++++...||++||++.++|+++|+.+++|+++||.+++|++++
T Consensus        92 ~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~~~KR~t~~~~~vlg~~~a~~~l~gw~Av~g~~~~  168 (294)
T PRK12873         92 TAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYPSAKRWFAYPQAILALCWGFAVLIPWAAAEGSLNG  168 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhHHHHHHHHHhCCCch
Confidence            99999999999999887665    77888999988888999999999999999999999999999999999999873

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=4.7e-35  Score=235.44  Aligned_cols=152  Identities=56%  Similarity=1.011  Sum_probs=140.8

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT   80 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~   80 (153)
                      ||++||+.+.+.++|+++|..++...++.+++...++..++.++.++++|++|||+|+|+|++|+||++||+|+|++|++
T Consensus         8 ~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~   87 (281)
T TIGR01474         8 MRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVR   87 (281)
T ss_pred             HccccHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHH
Confidence            69999999999999999999998653233567667888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910          81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN  152 (153)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~  152 (153)
                      ||+.++.++.++++.+++..|+.+..+++.+.+..+.||+.||+++++++++|+.+++++++||++++|+++
T Consensus        88 ~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~  159 (281)
T TIGR01474        88 QAILFLLVQLLVALGVLLQLNPLTILLGVASLALVATYPFMKRITYWPQLVLGLAFGWGALMGWAAVTGDLS  159 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhchhcccccccHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            999999999999999999899999999999988899999999999999999999999999999999999876

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=2.2e-34  Score=234.75  Aligned_cols=153  Identities=50%  Similarity=0.883  Sum_probs=140.9

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCC---CCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCC
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPG---CLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSI   77 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~i   77 (153)
                      +|++||++.++.++|+++|..+|....   ...++..++++.++.+++++++|++|||+|+|+|++|+||++||+|+|++
T Consensus        37 ~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~i  116 (314)
T PRK12878         37 ARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQV  116 (314)
T ss_pred             HccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCc
Confidence            377899999999999999999986531   14566678889999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCCC
Q psy1910          78 STTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE  153 (153)
Q Consensus        78 s~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~~  153 (153)
                      |++|++.++.++.++|+.+++..|+.++.+++.+++..+.||+.||+++++++++|+.+++++++||++++|++++
T Consensus       117 s~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~~Gl~~~~~~l~g~~a~~g~~~~  192 (314)
T PRK12878        117 SRKQAKVFMVLQALVGLAVLLQFNWFAIALGIASLAIVAAYPFMKRITWWPQFFLGLAFSWGALMGWAAHFGSLSL  192 (314)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHhCCCch
Confidence            9999999999999999999988899999999999888999999999999999999999999999999999999863

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1.7e-34  Score=233.19  Aligned_cols=151  Identities=36%  Similarity=0.600  Sum_probs=140.5

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT   80 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~   80 (153)
                      +|++||+..++.++|+++|..+|..  +.+++..+++.+++.+++++++|++|||+|+|+|++|+||++||+|||++|++
T Consensus        16 ~R~~kp~~~~l~~~~~~~g~~lA~~--~~~~~~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~   93 (290)
T PRK12870         16 LRWDKPAGRLILMIPALWAVFLAAH--GLPPLPLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVK   93 (290)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHH
Confidence            4788999999999999999999854  24677778888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCCC
Q psy1910          81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE  153 (153)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~~  153 (153)
                      ||+.++.++.++++.+++.+|+.++.+++.+.++.+.||+.||++.++|+++|+.+++++++||.+++|++++
T Consensus        94 ~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~l~g~~a~~g~~~~  166 (290)
T PRK12870         94 VGIVIAIVALLCAAGLAFFLNPLSFWLCVAAVPVIFLYPLAKRVFPVPQLVLAIAWGFAVLISWSAVTGHLDL  166 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhccccceeeehHHHHhHHHHHHHHHcCCCCH
Confidence            9999999999999999999999999999998888999999999999999999999999999999999998763

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.7e-34  Score=230.00  Aligned_cols=149  Identities=24%  Similarity=0.238  Sum_probs=134.5

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD   81 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~   81 (153)
                      |+.||+.+.+...-.++|..+|..  +.+++..+++.+++.+++++++|++||++|+|+|++|+||++||+|||++|++|
T Consensus         8 el~k~~~t~~al~~a~~g~~lA~~--~~~~~~~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~   85 (286)
T PRK12895          8 DYIKLEHTVFDLPFILAGYVIAAG--HYIHPIKILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMRE   85 (286)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHH
Confidence            689999998888888888888753  235666677778889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910          82 AIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN  152 (153)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~  152 (153)
                      |+.++..+.++++.+++++|+.++.++.........|+++||+++++|+++|+..++++++||.+++|+++
T Consensus        86 A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~~l~~~yp~~KR~t~~~~~~lG~~~g~~~l~g~~Av~g~~~  156 (286)
T PRK12895         86 AIAFTIIFIAIFEICTFLLNRLVFILSPIVIFLFIIDPFLKRYTAWRHIYMGSIIGLGVLAGYLAVIPAFP  156 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHhHHHHHHHHHcCCCC
Confidence            99999999999999999999999888888776777788899999999999999999999999999999875

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1.4e-33  Score=227.15  Aligned_cols=151  Identities=47%  Similarity=0.802  Sum_probs=140.2

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT   80 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~   80 (153)
                      +|++||...++..+|+++|..++... ..+++...++++++.+++++++|++|||+|+|+|++|+||++||+|||++|++
T Consensus        14 ~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~   92 (285)
T PRK12847         14 MRLHKPIGILLVFFPTLFGLLLASHS-LLPDISLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVK   92 (285)
T ss_pred             HCcchHHHHHHHHHHHHHHHHHHhCc-cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHH
Confidence            57889999999999999999998643 23678788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910          81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN  152 (153)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~  152 (153)
                      ||+.++..+.++++.+++..|+.++.+++.+.+..+.||+.||+++++++++|+.+++++++||.+++|+++
T Consensus        93 ~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~~~~~l~~~~a~~g~~~  164 (285)
T PRK12847         93 QALILLFILLLIALVILLLLNKTTIYLSFIAVILIVLYPLMKRFFYWPQLFLGFTFNMGILMAFAAVQNQLD  164 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            999999999999999998899999999999988899999999999999999999999999999999999876

>PLN02776 prenyltransferase

Probab=100.00  E-value=2e-33  Score=230.35  Aligned_cols=149  Identities=25%  Similarity=0.323  Sum_probs=134.3

Q ss_pred             cccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHH
Q psy1910           3 LDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDA   82 (153)
Q Consensus         3 l~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a   82 (153)
                      ++||+...+.+++.+.|..+|..  +.+++..+++..++++++++++|++||++|+|+|++|+||++||+|+|++|++||
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~--~~~~~~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A   78 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSG--EAIDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHA   78 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHH
Confidence            68999999999999999998853  2467878888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCCC
Q psy1910          83 IIFLAGQLGAGLLI-LVQLNLYTIILGSTSL-LFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE  153 (153)
Q Consensus        83 ~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~-~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~~  153 (153)
                      +.++..+..+|+.+ ++..|+.+..+++.++ ++...||++||+++++++++++.+++|+++||.|++|++|+
T Consensus        79 ~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avtg~~~~  151 (341)
T PLN02776         79 VAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTPLKQIHPANTWVGAVVGAIPPLMGWAAASGQLDA  151 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHccCCchhHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            99999999999955 4668999999988875 45789999999999998777777889999999999999874

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2e-33  Score=227.06  Aligned_cols=151  Identities=26%  Similarity=0.265  Sum_probs=136.6

Q ss_pred             CccccchHHHHHHHHHHHHHHHhcc----CCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAV----PGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS   76 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~   76 (153)
                      +|++||+...+.....+.|..++..    .+ .+++..+++++++.+++++++|++|||+|+|+|++|+||++||+|||+
T Consensus        12 ~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~-~~~~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~   90 (291)
T PRK12874         12 SELVVFKHSIFSLPFIFIAMIVASKQKNDTG-WFGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGR   90 (291)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHhhhhccCC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCC
Confidence            3789999998888878888777641    22 467888899999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910          77 ISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN  152 (153)
Q Consensus        77 is~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~  152 (153)
                      +|++||+.++..+.++++.+++.+|+.+..+++....+...||++||+++++|+++|+.+++++++||.+++|+++
T Consensus        91 is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~~g~~~~~~~l~G~~av~g~~~  166 (291)
T PRK12874         91 ISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFPFLIVLGGYSYFKRFSSLAHLVLGLSLGLAPIAGVVAVLGEIP  166 (291)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            9999999999999999888888899998888877777889999999999999999999999999999999999876

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=2.9e-33  Score=225.07  Aligned_cols=150  Identities=45%  Similarity=0.799  Sum_probs=137.8

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT   80 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~   80 (153)
                      +|++||....+.++|+++|..++..  +.+++..+++.+++.++.++++|++|||+|+|+|++|+||++||+|||++|++
T Consensus        12 ~R~~kp~~~~l~~~p~~~g~~la~~--~~~~~~~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~   89 (282)
T PRK12848         12 MRLDKPIGTLLLLWPTLWALWLAAD--GIPDLWVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEK   89 (282)
T ss_pred             HCccchHHHHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHH
Confidence            4777899999999999999988853  23567777888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910          81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN  152 (153)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~  152 (153)
                      ||+.++..+..+++.+++..|+.+..+++.+.+..+.|++.||++.++++++|+.+++++++||.+++|+++
T Consensus        90 ~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~g~~~~~g~~a~~~~~~  161 (282)
T PRK12848         90 EALALFVVLVLVAFLLVLTLNTLTIWLSVAALALAWIYPFMKRYTHLPQVVLGAAFGWGIPMAFAAVQGSVP  161 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            999999999999999999899999999988888889999999999999999999999999999999999875

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=4.3e-33  Score=223.83  Aligned_cols=150  Identities=24%  Similarity=0.304  Sum_probs=134.7

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT   80 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~   80 (153)
                      +|++||++.++..+|.++|..++..  +.+++..+++.+++.++.++++|++|||+|+|+|++|+||++||+|+|++|++
T Consensus         6 ~~l~rp~~~~~~~~~~~~g~~la~~--~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~   83 (279)
T PRK12869          6 LKLLKPRVIWLLDLAAVAGYFLAAK--HGVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRK   83 (279)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHH
Confidence            3789999999999999999998853  24677778888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910          81 DAIIFLAGQLGAGLLILVQ-LNLYTI-ILGSTSLLFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN  152 (153)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~-~~~~~~-~i~~~~~~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~  152 (153)
                      ||+.++..+.++++.++++ .|+.+. .+++....+.+.||. +||+++++++++|+.+++++++||++++|+++
T Consensus        84 ~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~  158 (279)
T PRK12869         84 EALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFAGNAAALAGYASGTGSLD  158 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccCChHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999887 888764 344445578899997 99999999999999999999999999999876

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=3.8e-33  Score=226.74  Aligned_cols=149  Identities=26%  Similarity=0.365  Sum_probs=133.8

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD   81 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~   81 (153)
                      +++||+++.+..+|+..|..++.. + .+++...++++++.++.++++|++|||+|+|+|++|+||++||+|||++|++|
T Consensus        18 ~L~RP~~~~~~~~~~~~G~~la~~-~-~~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~   95 (306)
T PRK13362         18 QVTKPGIIFGNVISVAGGFFLASK-G-HVDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGE   95 (306)
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHcc-C-CCCHHHHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHH
Confidence            689999999999999999999843 2 36777777888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910          82 AIIFLAGQLGAGLLILV-QLNLYTIILGSTSL-LFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN  152 (153)
Q Consensus        82 a~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~-~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~  152 (153)
                      |+.++..+..+|+.++. ..|+.+..++.++. .+.+.||+ +||+++++++++|+.+++|+++||.+++|+++
T Consensus        96 A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~~lKr~t~~~~~vgg~~ga~p~l~G~~a~~g~~~  169 (306)
T PRK13362         96 ALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLSGAMPPVVGYCAVTGQFD  169 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhccCcHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            99999999999998664 56888777777665 46889995 99999999999999999999999999999876

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4e-33  Score=225.28  Aligned_cols=149  Identities=28%  Similarity=0.341  Sum_probs=134.6

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD   81 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~   81 (153)
                      |++||+...+...+..+|..+|..  +.+++..+++..++.++.++++|++|||+|+|+|++|+||++||+|+|++|++|
T Consensus        13 ~L~r~~~~~~~~~~~~~g~~lA~~--~~~~~~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~   90 (291)
T PRK12886         13 EMIKFSHTLFALPFAGIGAVLAAL--GLPGASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGS   90 (291)
T ss_pred             HHhCccchHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHH
Confidence            689999999988889999888753  246677788889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910          82 AIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN  152 (153)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~  152 (153)
                      |+.+...+.+.+..+++..|+.+..+++.+......||++||++.++++++|+++++++++||++++|+++
T Consensus        91 A~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~Y~~~Kr~t~~~~~~~g~~~~~~~l~g~~a~~g~~~  161 (291)
T PRK12886         91 AILFIVLSSLLMLFAAWFLNPLCLYLSPPALFFLLLYSYCKRFTALAHVVLGFCLALAPLGAWIAIRGTIE  161 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            99998777777776777899999888888887789999999999999999999999999999999999876

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-34  Score=230.25  Aligned_cols=150  Identities=31%  Similarity=0.387  Sum_probs=140.6

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD   81 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~   81 (153)
                      +++||+...+..++.+.|..+|..  ...++..++...+|..+..++++++|+|+|+|+|++|+||++||+|+|+++|+|
T Consensus        23 ~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~  100 (304)
T COG0109          23 QLTKPRVISLLLITAFAGMLLAPR--GSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPRE  100 (304)
T ss_pred             HHhCCeeeehHHHHHHHHHHHccc--ccccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHH
Confidence            689999999999999999999974  246788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhcCCCCC
Q psy1910          82 AIIFLAGQLGAGLLIL-VQLNLYTIILGSTSL-LFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE  153 (153)
Q Consensus        82 a~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~-~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~~  153 (153)
                      ++.++.++.++|+.++ +..|+.+.++++.++ .+.++||. +||+++++.+++|+.+++||++||.|++|++++
T Consensus       101 al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~PpliGwaAvtg~~~~  175 (304)
T COG0109         101 ALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMPPLIGWAAVTGSISL  175 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccceeeeeccccccccceeeeeeCCCCc
Confidence            9999999999999998 778999999999885 78999995 999999999999999999999999999999874

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=100.00  E-value=1.3e-32  Score=220.96  Aligned_cols=151  Identities=30%  Similarity=0.387  Sum_probs=136.6

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT   80 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~   80 (153)
                      +|++||+++++..+|+..|..++... ..+++..+++++++.++.++++|++|||+|+|+|++|+||++||+|||++|++
T Consensus         4 ~~l~rp~~~~~~~~~~~~g~~la~~~-~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~   82 (280)
T TIGR01473         4 LQLTKPRIISLLLITAFAGMWLAPGG-ALVNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPR   82 (280)
T ss_pred             HHHccHHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHH
Confidence            47899999999999999999998542 12678888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHhhcc-cCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910          81 DAIIFLAGQLGAGLLIL-VQLNLYTIILGSTSLL-FVTLYP-LMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN  152 (153)
Q Consensus        81 ~a~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~-~~~~Ys-~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~  152 (153)
                      ||..++..+.++|+.++ +..|+.+..++..+.+ +.+.|| .+||+++++++++|+.+++++++||++++|+++
T Consensus        83 ~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~  157 (280)
T TIGR01473        83 EALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSIS  157 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcChhhccCCchhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            99999999999999854 5589888888888874 588999 599999999999999999999999999999876

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=1.8e-32  Score=221.89  Aligned_cols=149  Identities=34%  Similarity=0.461  Sum_probs=134.6

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD   81 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~   81 (153)
                      |++||+.+++..+|+.+|..++.. + .+++..+++++++.+++++++|++|||+|+|+|++|+||++||+|+|++|++|
T Consensus        15 ~L~rp~~~~~~~~~~~~G~~la~~-~-~~~~~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~   92 (296)
T PRK04375         15 ALTKPRVISLNLFTALGGMLLAPP-G-VPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPRE   92 (296)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHH
Confidence            689999999999999999999853 2 46777888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910          82 AIIFLAGQLGAGLLILVQ-LNLYTIILGSTSL-LFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN  152 (153)
Q Consensus        82 a~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~-~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~  152 (153)
                      |+.++..+..+++.+++. .|+.+..+++.+. .+...||+ +||+++++++++|+.+++++++||++++|+++
T Consensus        93 a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~  166 (296)
T PRK04375         93 ALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLIGWAAVTGSLS  166 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhcCCccchHHHHHHHHhHHHHHHHHhCCCCC
Confidence            999999999999988755 6777777777775 36778997 99999999999999999999999999999876

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.3e-32  Score=221.61  Aligned_cols=149  Identities=28%  Similarity=0.355  Sum_probs=134.7

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT   80 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~   80 (153)
                      +|++||+..+....+.++|..++..  +.+++..+++..++.+++++++|++|||+|+|+|++|+||++||+|+|++|++
T Consensus        19 l~L~R~~~~~~~l~~~~~g~~la~~--~~~~~~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~   96 (300)
T PRK13106         19 LRFLRIEQTFFSLPMAYLGAFVAIK--GIPPISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKIS   96 (300)
T ss_pred             HHHHccccHHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHH
Confidence            3789999998888889999888853  24678788889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCC
Q psy1910          81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCV  151 (153)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~  151 (153)
                      ||+.+...+.+.++.++...|+.+..++..+.+....||++||+++++|+++|+..++++++||++++|..
T Consensus        97 ~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~~~G~~a~~g~~  167 (300)
T PRK13106         97 EAKALITAGLILFFASAYLVNRWALLLSPIVALIAMSYPYMKRYTAFANYHLASIQGLAVFSGAVAVLGLY  167 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhcCCcchHHHHHHHHHHHHHHHHHHHcCCc
Confidence            99999888888887778889999988888887778889999999999999999999999999999998854

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.4e-32  Score=220.13  Aligned_cols=150  Identities=25%  Similarity=0.289  Sum_probs=130.4

Q ss_pred             ccccchHHHHHHHHHHHHHHHhcc--CCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCH
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAV--PGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSIST   79 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~   79 (153)
                      |+.||+..++. .|.....++.+.  .++.+++..+++..++++++++++|++|||+|+|+|++|+||++||+|+|++|+
T Consensus         7 ~l~r~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~   85 (284)
T PRK12888          7 RLVAIEHSVFA-LPFAYIAALTAMFASDGSVHWADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSV   85 (284)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCH
Confidence            67889888554 444444333321  123478888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910          80 TDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN  152 (153)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~  152 (153)
                      +||+.++..+.++++.++...|+.++.++..+.+....|++.||+++++|+++|+++++++++||++++|+++
T Consensus        86 ~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~t~~~~~~lg~~~~~~~l~g~~a~~g~~~  158 (284)
T PRK12888         86 RTAWTGALVALAVFLGAAALLNPLCLALAPLAVAPLVVYPYAKRFTNFPHAILGLAQAVGPVGAWIAVTGTWS  158 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999988888888899999888888887788999999999999999999999999999999999876

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=4.6e-32  Score=217.99  Aligned_cols=150  Identities=34%  Similarity=0.424  Sum_probs=135.4

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT   80 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~   80 (153)
                      +|++||+...+......+|..++.. + .+++..+++.+++.+++++++|++|||+|+|+|++|+||++||+|+|++|++
T Consensus         6 ~~L~r~~~~~~~~~~~~~g~~la~~-~-~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~   83 (282)
T TIGR01475         6 LELIKFEHTVFALPFAYAGALLAAK-G-LPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKK   83 (282)
T ss_pred             HHHHccccHHHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHH
Confidence            3789999998886666667777643 2 4678888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910          81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN  152 (153)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~  152 (153)
                      ||+.++..+.+.++.++...|+.+..++..+.+..+.|+++||+++++++++|+.+++++++||.+++|+++
T Consensus        84 ~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~  155 (282)
T TIGR01475        84 EARTMIILSLALFLSASYFLNPLAFILSPLVLLVLIIYPYTKRFTFLCHYVLGSTYGLAPLAGWVAVIGTIS  155 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHhccccccHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999999999888888888899998888888887789999999999999999999999999999999999876

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.98  E-value=9.1e-32  Score=216.91  Aligned_cols=150  Identities=39%  Similarity=0.591  Sum_probs=140.1

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT   80 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~   80 (153)
                      +|++||.++.+...|.++|..++.+  +.+++...++.+++++++++++|++||++|+|+|++|+||++||+|||++|++
T Consensus        17 ~r~~r~i~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~   94 (289)
T COG0382          17 LRLDRPIFNLLLLLPALLGLLLAAS--GLPSLKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVK   94 (289)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHH
Confidence            5889999999999999999999873  34557788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910          81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN  152 (153)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~  152 (153)
                      ||+.+..++.++++.+++.+|+.++.+++.+.++.+.|+++||.++++|+.+|..+++++++|+.+++|+++
T Consensus        95 ~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l~~~Y~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~~~~~  166 (289)
T COG0382          95 EALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAYPFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLP  166 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999999999999999999997799999999999999999999999999998654

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.98  E-value=2.2e-31  Score=215.22  Aligned_cols=141  Identities=26%  Similarity=0.244  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHH-hcc----CCC---CCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910          10 WLLFWPCGWSISM-AAV----PGC---LPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD   81 (153)
Q Consensus        10 ~~~~~p~~~g~~~-a~~----~~~---~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~   81 (153)
                      .++.+|....+++ |..    .++   .|+|..+++..++++++++++|++|||+|+|+|++|+||++||+|+|++|++|
T Consensus        16 t~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~   95 (300)
T PRK12876         16 ALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINF   95 (300)
T ss_pred             HHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHH
Confidence            4667787766544 431    133   57899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCC
Q psy1910          82 AIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGC  150 (153)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~  150 (153)
                      |+.++..+.+++..++..+|+.++.++..+.+...+||++||+++++|+++|+.+++++++||.+++|+
T Consensus        96 A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~~~~~~iY~~~KR~t~~~~~vLGl~~~~~~l~~~~Av~~~  164 (300)
T PRK12876         96 SMLLLTLCSFLFLSLCWLLNPLCFSLAVLSTLLMIIYPYTKRVTFLCHWILGLVYYLAILMNFFAIIET  164 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999888888888889999999999999888899999999999999999999999999999998887

>KOG1381|consensus

Probab=99.96  E-value=1.7e-31  Score=210.41  Aligned_cols=153  Identities=64%  Similarity=1.146  Sum_probs=146.0

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT   80 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~   80 (153)
                      ||+.||..+++..+|+.|+.++++..+..++...+.+.-.+.+++++++|+|||..|+|+|++++|++.||+.||++|++
T Consensus        71 mRldkPiGTwLLywPCtWSIamaAdag~~p~~~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVeRtklRPlAsG~ls~~  150 (353)
T KOG1381|consen   71 MRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIKMLALFGVGALLMRGAGCTINDLWDKDLDAKVERTKLRPLASGSLSPR  150 (353)
T ss_pred             HhcCCCceeeeeecchHHHHHhccCCCccchhHHHHHhcccHHHhccCCceehhhhhhhhhhhHhhhcccccccCCcchh
Confidence            79999999999999999999999987777777777888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCCC
Q psy1910          81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE  153 (153)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~~  153 (153)
                      +|+.+-..+..+|+.+...+|+.+..++..+....+.|+.+||.++++++++|+.+.++.+.||-|+.|+.+|
T Consensus       151 qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~sl~~v~~ypl~kr~TY~pq~vLgltfnwGAllGw~A~~g~~~~  223 (353)
T KOG1381|consen  151 QAIGFLGAQLSLGLGILLQLNWYSIALGASSLALVITYPLMKRFTYWPQLVLGLTFNWGALLGWCALKGSLSP  223 (353)
T ss_pred             HHHHHHHHHHHHhHHHHHhccHHHHHhcccccccEEEeehhhhcchhHHHHHhhhcchhhhhcchhhcCccCh
Confidence            9999999999999999999999999999998888999999999999999999999999999999999999876

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.96  E-value=9.5e-29  Score=198.45  Aligned_cols=144  Identities=23%  Similarity=0.312  Sum_probs=131.8

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD   81 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~   81 (153)
                      |++||+++....+|.++|..++..  ..+++..+++.++++++.++++|++|||+|+|+|++|+  ++||+|||++|++|
T Consensus         8 ~l~Rp~~~~~~~~~~~~g~~la~~--~~~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~--~~Rpl~sG~is~~~   83 (279)
T PRK09573          8 ELIRPKNCIGASIGAIIGYLIASN--FKIDLKGIILAALVVFLVCAGGNVINDIYDIEIDKINK--PERPIPSGRISLKE   83 (279)
T ss_pred             HHHhHhHHHHHHHHHHHHHHHHcc--CCcchHHHHHHHHHHHHHHHHHHHHHhhcccccccccC--CCCCcCCCccCHHH
Confidence            689999999999999999888853  23577788889999999999999999999999999986  59999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhcC
Q psy1910          82 AIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVTG  149 (153)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g  149 (153)
                      |+.++..+.++++.+++..|+.++.+++.+....+.||. +||+++++|++.|...+..++.|+.++++
T Consensus        84 a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Ys~~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~  152 (279)
T PRK09573         84 AKIFSITLFIVGLILSIFINIYAFLIALLNSILLYLYAKDLKKTGLIGNLIVAYLTGLSFIFGGLAVFN  152 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999878899995 99999999999999988889999988876

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.96  E-value=7.8e-29  Score=200.42  Aligned_cols=151  Identities=18%  Similarity=0.125  Sum_probs=126.2

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT   80 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~   80 (153)
                      +|++||++|....+ .+.+...+.......++...++++++.++.++++|++||++|+|+|++|+||++||++||++|++
T Consensus        15 l~L~RP~~w~~nll-~~~~~~~a~~~~~~~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~   93 (295)
T PRK12324         15 LKLLRPKQWIKNLF-VFAAPIFAGNLLNPGALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVS   93 (295)
T ss_pred             HHHhCchHHHHHHH-HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHH
Confidence            37899999976555 33333444322112235566777888888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910          81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN  152 (153)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~  152 (153)
                      +|+.++.++.++|+.+++..|+.+..+.+...++.++||. +||++.++++..+++++++++.|..+.+...+
T Consensus        94 ~A~~~~~~l~~~~l~la~~l~~~~~~~~~~~~~~~~~Ys~~lK~~~~~d~l~va~~~~lr~~~G~~a~~~~~s  166 (295)
T PRK12324         94 LAYILAVVLLVASLALAYLLSPKLALVLLVYLVLNLAYSFKLKHQPVLDVFCIASGFVLRAIAGGVAIGVPLS  166 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchhhHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            9999999999999999998999887777777788899997 99999999999999999999999998876654

>PRK08238 hypothetical protein; Validated

Probab=99.95  E-value=1.1e-27  Score=204.80  Aligned_cols=146  Identities=21%  Similarity=0.169  Sum_probs=123.1

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD   81 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~   81 (153)
                      |++||++|....+- +++...+........+...++++++++++++++|++||++|+|+|++|+||++||++||++|+++
T Consensus       196 ~l~Rp~q~~kn~l~-~~p~l~a~~~~~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~  274 (479)
T PRK08238        196 KALRVHQWAKNLLV-FVPLLAAHQFGDLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPF  274 (479)
T ss_pred             HHhCCcHHHHHHHH-HHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHH
Confidence            68899999555543 23444442211112355678888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhc
Q psy1910          82 AIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVT  148 (153)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~  148 (153)
                      |+.++.++..+|+.+++.+|+.++.+.+...++..+||+ +||+++++++++|+++++++++|+.+.+
T Consensus       275 A~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ys~~lKr~~~~~~~~la~~~~lr~~~G~~a~~  342 (479)
T PRK08238        275 GLAAAPLLLLAGLALALALGPAFLLVLLAYLALTLAYSLRLKRKVLVDVLTLAALYTLRIIAGAAAIG  342 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHhcCCccccchHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999777777777788999997 9999999999999999999999998865

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=5.3e-27  Score=188.03  Aligned_cols=145  Identities=20%  Similarity=0.202  Sum_probs=130.2

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT   80 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~   80 (153)
                      +|++||+.+....++..+|..++..  . .++..+++.+++.++.++++|++|||+|+|+|++| |+ +||+++|++|++
T Consensus         8 ~~l~R~~~~~~~~~~~~~g~~la~~--~-~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~-~Rpl~~G~is~~   82 (279)
T PRK12884          8 LELLRPEHGLMAGIAVVLGAIIALG--G-LPLDEALLGFLTAFFASGSANALNDYFDYEVDRIN-RP-DRPIPSGRISRR   82 (279)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHCC--C-CchHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc-CC-CCCCCCCCCCHH
Confidence            3689999999999999999988853  2 22456778889999999999999999999999998 75 999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhcCC
Q psy1910          81 DAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVTGC  150 (153)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~  150 (153)
                      |++.++.++.++++.++..+|+..+.+++.+..+.+.||. +||+++++++..|+..+++++.|+.++++.
T Consensus        83 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ys~~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~  153 (279)
T PRK12884         83 EALLLAILLFILGLIAAYLISPLAFLVVILVSVLGILYNWKLKEYGLIGNLYVAFLTGMTFIFGGIAVGEL  153 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999998999988888888888999997 899999999999999999999999887764

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=3.5e-26  Score=183.30  Aligned_cols=143  Identities=23%  Similarity=0.291  Sum_probs=124.6

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD   81 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~   81 (153)
                      |++||+++.+..+|..+|..++..  ..+++...++.+++.++.++++|++|||+|+|+|++| | ++||+|+|++|++|
T Consensus         9 ~l~Rp~~~~~~~~~~~~g~~~a~~--~~~~~~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~-~-~~Rpl~~G~is~~~   84 (276)
T PRK12882          9 ELTRPVNAVVAGVAAFIGAFIAGG--ILSSPSLTGLAFAAVFLATGAGNAINDYFDREIDRIN-R-PDRPIPSGAVSPRG   84 (276)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-C-CCCCcCCCCcCHHH
Confidence            689999999999999999999853  2233445678888999999999999999999999985 4 59999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhc
Q psy1910          82 AIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVT  148 (153)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~  148 (153)
                      ++.++..+.++++.+++.+|+.++.++..+....+.|+. +||++.++++..|...+..++.|+.+.+
T Consensus        85 a~~~~~~l~~~g~~~~~~l~~~~~~~~~~~~~~~~~Yt~~lK~~~~~g~~~vg~~~g~~~~~g~~~~~  152 (276)
T PRK12882         85 ALAFSILLFAAGVALAFLLPPLCLAIALFNSLLLVLYAETLKGTPGLGNASVAYLTGSTFLFGGAAVG  152 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999988878889995 9999989888888766666777876655

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.94  E-value=1.5e-25  Score=179.70  Aligned_cols=145  Identities=23%  Similarity=0.315  Sum_probs=125.4

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD   81 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~   81 (153)
                      +++||+.+.+..++.+.|..++..  +.+++...++.+++.++.++++|++|||+|+|+|+.| | ++||+|+|++|++|
T Consensus         8 ~l~Rp~~~~~~~~~~~~G~~la~~--~~~~~~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n-~-~~Rpl~sG~is~~~   83 (277)
T PRK12883          8 EITRPHNCILAGIVGILGSLVALG--GIPPIKTLILIFLVVYLGCSGGNTINDYFDYEIDKIN-R-PNRPLPRGAMSRKA   83 (277)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHHHHHHHhHHHhhhhHhccccC-C-CCCCCCCCccCHHH
Confidence            689999999999999999888743  2345666677788888999999999999999999984 5 59999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CccccchhhHHHHhhhhHHHHHHHHHhcCCC
Q psy1910          82 AIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL-MKRVTHWAQLTLGMTFNYGALMGYSAVTGCV  151 (153)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~  151 (153)
                      ++.++..+.++|+.+++..|+.++.+++.+..+.+.|++ +||++.+++...|...+..++.|++++ +++
T Consensus        84 a~~~~~~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~Y~~~~k~~~~lg~~~vg~~~g~~~~~g~~a~-~~~  153 (277)
T PRK12883         84 ALYYSLLLFAVGLALAYLINIEAFLFALGAYVLMFLYAWKLKPLPFIGNVVVALLTGATPIYGAIAV-GRI  153 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHHHHHh-ccc
Confidence            999999999999999999999998888888888999997 999988889988887776678888776 544

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.93  E-value=1.2e-24  Score=175.06  Aligned_cols=145  Identities=19%  Similarity=0.332  Sum_probs=120.0

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCC-CcHHHHHH-HHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCC
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCL-PDLHTLAL-FGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSIS   78 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~-~~~~~~~l-~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is   78 (153)
                      ++++||+++....+|.+.|.+++...... .+|...++ ++++..+.++++|++|||+|+|+|++|+  ++||+++|++|
T Consensus         4 ~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~--~~Rpi~~G~is   81 (283)
T TIGR01476         4 IELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINE--PQRPIPSGIIS   81 (283)
T ss_pred             eEecCCceehhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCC--CCCCCCCCCcC
Confidence            47899999999999999999887432222 34654444 6778899999999999999999999976  48999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccc----CccccchhhHHHHhhh-hHHHHHHHHHh
Q psy1910          79 TTDAIIFLAGQLGAGLLILVQLNLYT-IILGSTSLLFVTLYPL----MKRVTHWAQLTLGMTF-NYGALMGYSAV  147 (153)
Q Consensus        79 ~~~a~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~Ys~----~Kr~~~~~~~~~g~~~-~~~~l~g~~a~  147 (153)
                      ++|++.++.++..+++.+++.++... ..+++.+.+..+.||.    +||+++++++..|++. ..++..|+.+.
T Consensus        82 ~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~  156 (283)
T TIGR01476        82 LREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIF  156 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999988776554 6777778778999983    9999999999999874 56666666554

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.93  E-value=9.8e-25  Score=178.07  Aligned_cols=142  Identities=20%  Similarity=0.298  Sum_probs=121.3

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHH------HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccC
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHT------LALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNG   75 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG   75 (153)
                      +++||+++...++|...|...+..    .++..      ++..+++..+.++++|++|||+|+|+|++|+  ++||+++|
T Consensus        32 ~l~RP~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~--~~Rpl~sG  105 (314)
T PRK07566         32 QLMKPITWFPPMWAFLCGAVSSGA----FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINE--PYRPIPSG  105 (314)
T ss_pred             HHhCCcchHHHHHHHHHHHHHcCC----CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCC--CCCCCCCc
Confidence            678999999999998888776532    23322      3446677888999999999999999999976  48999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cCccccchhhHHHHhhh-hHHHHHHHHHhcC
Q psy1910          76 SISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYP----LMKRVTHWAQLTLGMTF-NYGALMGYSAVTG  149 (153)
Q Consensus        76 ~is~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys----~~Kr~~~~~~~~~g~~~-~~~~l~g~~a~~g  149 (153)
                      ++|++|++.++..+.++++.+++.+|+....+++.+.+..+.||    .+||+++++++++|+.. +++++.|+.+.++
T Consensus       106 ~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~~~  184 (314)
T PRK07566        106 AISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAFGA  184 (314)
T ss_pred             eeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999899998899988888899999    39999999999999875 7788899888774

>KOG1380|consensus

Probab=99.92  E-value=3.2e-27  Score=189.94  Aligned_cols=150  Identities=25%  Similarity=0.372  Sum_probs=139.4

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT   80 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~   80 (153)
                      ++|.||+...+++...+-|++++..   ..++..++...+|..+..+++|++||++|.+.|++|+||++||+|+|+|||.
T Consensus        98 ~eLsK~rLT~LVV~tt~~gYalap~---p~s~~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g~isp~  174 (409)
T KOG1380|consen   98 LELSKPRLTMLVVLTTMTGYALAPG---PFSFPTLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRGRISPL  174 (409)
T ss_pred             HHhcccceEEEEeeecccccccccc---CCCcchhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccccccCccChH
Confidence            3789999999999999999999974   3677888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHhhcccCccccchhhHHHHhhhhHHHHHHHHHhcCCCCC
Q psy1910          81 DAIIFLAGQLGAGLLILVQ-LNLYTIILGSTSL-LFVTLYPLMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVNE  153 (153)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~-~~~~~Ys~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~~  153 (153)
                      +|+.++.+....|+.+.++ .|+....+|...+ ++..+|+.+||..+.+.+++++.+++||++||.+++|.+||
T Consensus       175 hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTPlKrihiinTWvGavVGAIPPLMGwAAasg~l~~  249 (409)
T KOG1380|consen  175 HAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTPLKRIHIINTWVGAVVGAIPPLMGWAAASGLLDP  249 (409)
T ss_pred             HHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccchhhhhhhhhHHHHHhccCCccchhhhhccCCCc
Confidence            9999999999999987765 8999989888875 78899999999999999999999999999999999999986

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.92  E-value=3.9e-24  Score=172.56  Aligned_cols=150  Identities=22%  Similarity=0.165  Sum_probs=125.2

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccc--cccccCCCCCCCccccCCCCH
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDK--DIDSKVSRTKDRPLVNGSIST   79 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~--~~D~~~~r~~~RPl~sG~is~   79 (153)
                      ++.||+++....+|+..|..++...+ .+++..+++++++.++.++++|.+|||+|+  |+|++++|+++||+++|++|+
T Consensus         8 ~~~Rp~~~~~~~~p~l~G~~~a~~~~-~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~   86 (293)
T PRK06080          8 ELARPKTLPAAFAPVLVGTALAYWLG-SFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISP   86 (293)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHcC-CccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCH
Confidence            67999999999999999999985433 468888899999999999999999999998  689888888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccc-Cc--cccchhhHHHHhhhhHHH-HHHHHHhcCCC
Q psy1910          80 TDAIIFLAGQLGAGLLILVQ----LNLYTIILGSTSLLFVTLYPL-MK--RVTHWAQLTLGMTFNYGA-LMGYSAVTGCV  151 (153)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~Ys~-~K--r~~~~~~~~~g~~~~~~~-l~g~~a~~g~~  151 (153)
                      +|++.++..+.++++.++..    .++..+.+++.+.+..+.||. .|  ++..++++..|+..+... ..++++++|++
T Consensus        87 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~~~~~~~~~  166 (293)
T PRK06080         87 KQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGTYYLQAGTV  166 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999988887766544    477778888888888899995 22  245588999998776555 45588888876


Q ss_pred             C
Q psy1910         152 N  152 (153)
Q Consensus       152 ~  152 (153)
                      +
T Consensus       167 ~  167 (293)
T PRK06080        167 D  167 (293)
T ss_pred             C
Confidence            5

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.92  E-value=3.6e-24  Score=173.60  Aligned_cols=150  Identities=18%  Similarity=0.129  Sum_probs=114.5

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccC-CC--------CCCCcc
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKV-SR--------TKDRPL   72 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~-~r--------~~~RPl   72 (153)
                      +++||+.+.+...|.++|.++|....+.+++...++.+++.++..+++|++|||+|+|+|++| +|        |++||+
T Consensus        10 ~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl   89 (297)
T PRK12871         10 DLTRAHFLPAWPLLFCSGLVLAFANYGGFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPI   89 (297)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCcc
Confidence            689999999999999899888842212467766654455555666778999999999999853 33        379999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcccCccccchh--hHHHHhhhhHHHHHHHHH
Q psy1910          73 VNGSISTTDAIIFLAGQLGAGLLILVQLNL----YTIILGSTSLLFVTLYPLMKRVTHWA--QLTLGMTFNYGALMGYSA  146 (153)
Q Consensus        73 ~sG~is~~~a~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~Ys~~Kr~~~~~--~~~~g~~~~~~~l~g~~a  146 (153)
                      ++|++|++|++.++..+.++++.++...+.    ..+.+++.+.+..+.|+..||.+.++  ++++++.++++++.||. 
T Consensus        90 ~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~~kr~~~~p~~~l~G~~~~~~~~~~g~~-  168 (297)
T PRK12871         90 PSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQVKKRNQKYPVAQLLGRTDFTLFPAAGYL-  168 (297)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHH-
Confidence            999999999999999999999988776554    34455566667778888767765444  55677888998888875 


Q ss_pred             hcCCCC
Q psy1910         147 VTGCVN  152 (153)
Q Consensus       147 ~~g~~~  152 (153)
                      ++|+++
T Consensus       169 ~~g~~~  174 (297)
T PRK12871        169 CYGQPD  174 (297)
T ss_pred             HhCCCc
Confidence            577765

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.91  E-value=1.1e-23  Score=171.34  Aligned_cols=146  Identities=24%  Similarity=0.302  Sum_probs=117.8

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHH------HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCcccc
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHT------LALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVN   74 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~s   74 (153)
                      ++++||+++...++|++.|...+.   + .+|..      .+..+++..+.++++|.+|||+|+|.|+.|+|  +||+++
T Consensus        20 ~~l~RP~~~~~~~~~~~~G~~~~~---~-~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~--~Rpi~~   93 (306)
T TIGR02056        20 LQLMKPITWIPLIWGVVCGAAASG---N-FHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEP--YRPIPS   93 (306)
T ss_pred             HHHcChHhhHHHHHHHHHHHHHcC---C-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCC--CCCCCC
Confidence            368999999999999999988542   2 33332      34556777899999999999999999999875  899999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhhhHHHHHH
Q psy1910          75 GSISTTDAIIFLAGQLGAGLLILVQLN-------LYTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTFNYGALMG  143 (153)
Q Consensus        75 G~is~~~a~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~~~~~l~g  143 (153)
                      |++|++|++.++..+.++++.+++.+.       +..+.+++.+.+..+.||   + +||+++++++..|...+..+..+
T Consensus        94 G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg~~~~~~~~~~  173 (306)
T TIGR02056        94 GAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASYIALPWWA  173 (306)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998876653       567788888888899998   3 89999999988877665444444


Q ss_pred             HHHhcCCCC
Q psy1910         144 YSAVTGCVN  152 (153)
Q Consensus       144 ~~a~~g~~~  152 (153)
                      ..+++|+++
T Consensus       174 ~~a~~g~~~  182 (306)
T TIGR02056       174 GHALFGELN  182 (306)
T ss_pred             HHHHhCCCc
Confidence            346678765

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.91  E-value=1.1e-23  Score=175.33  Aligned_cols=145  Identities=23%  Similarity=0.315  Sum_probs=116.9

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHH------HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCcccc
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHT------LALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVN   74 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~s   74 (153)
                      ++++||++|...++|++.|....   +. .+|..      .+..+++..+.++++|++|||+|+|+|++|+  ++||+++
T Consensus        89 l~L~RP~t~~~~~~~v~~G~~~~---g~-~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~--~~Rpi~s  162 (375)
T PLN00012         89 LQLTKPVTWPPLVWGVLCGAAAS---GN-FHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINE--PYRPIPS  162 (375)
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHc---CC-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCC--CCCCcCC
Confidence            36899999999999999998843   22 34432      3667778889999999999999999999987  4899999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhh-hHHHHH
Q psy1910          75 GSISTTDAIIFLAGQLGAGLLILVQL-------NLYTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTF-NYGALM  142 (153)
Q Consensus        75 G~is~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~-~~~~l~  142 (153)
                      |++|+++++.++..+..+++.+++.+       |+..+.+++.+++..++||   + +||+++++++..|... .+|+..
T Consensus       163 G~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~  242 (375)
T PLN00012        163 GAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWA  242 (375)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHH
Confidence            99999999998888888777776554       4566778888888899998   3 9999999998887665 555566


Q ss_pred             HHHHhcCCCC
Q psy1910         143 GYSAVTGCVN  152 (153)
Q Consensus       143 g~~a~~g~~~  152 (153)
                      |+ +++|+++
T Consensus       243 g~-a~~g~~s  251 (375)
T PLN00012        243 GQ-ALFGTLT  251 (375)
T ss_pred             HH-HHcCCCC
Confidence            66 7788765

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.90  E-value=9.7e-23  Score=167.34  Aligned_cols=147  Identities=24%  Similarity=0.303  Sum_probs=113.4

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHH----HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCC
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHT----LALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSI   77 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~i   77 (153)
                      +++||+++. .++|+.+|..+|... ..+++..    +...++...+..+++|++|||+|+|+|++|+|+  ||+++|++
T Consensus        17 ~L~kP~t~l-~~~p~~~g~~lA~g~-~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rt--Rpl~~G~i   92 (331)
T PRK12392         17 ELLDPVTWI-SVFPCLAGGVMASGA-MQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPT--RPIPSGRL   92 (331)
T ss_pred             HHHCHHHHH-HHHHHHHHHHHHcCC-CCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCC--CCCCcCCc
Confidence            689997776 899999999987531 1122221    222233444566788999999999999999875  99999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhhhHHHHHHHH
Q psy1910          78 STTDAIIFLAGQLGAGLLILVQLNL--------YTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTFNYGALMGYS  145 (153)
Q Consensus        78 s~~~a~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~~~~~l~g~~  145 (153)
                      |++|++.++..+..+++.++.+++.        ..+..++.+.+..++||   + +||++.+++..+|+++++.+.+++.
T Consensus        93 s~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~~~~~~~~  172 (331)
T PRK12392         93 SEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITFLSAN  172 (331)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988876543        22344556677889996   3 7998888888999999988888888


Q ss_pred             HhcCCCC
Q psy1910         146 AVTGCVN  152 (153)
Q Consensus       146 a~~g~~~  152 (153)
                      ++.|+++
T Consensus       173 a~~g~~~  179 (331)
T PRK12392        173 ALFSDIR  179 (331)
T ss_pred             HHhcCCC
Confidence            8877764

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.90  E-value=1.8e-22  Score=163.47  Aligned_cols=150  Identities=14%  Similarity=0.065  Sum_probs=123.1

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccc--cccccCCCC--CCCccccCCC
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDK--DIDSKVSRT--KDRPLVNGSI   77 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~--~~D~~~~r~--~~RPl~sG~i   77 (153)
                      +.+||+++.++..|+.+|.+++.+..+..+|..+++++++.+++|+++|.+|||+|+  |.|++ +||  ++||+++|++
T Consensus         9 ~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~-~rt~~~~r~l~~G~i   87 (296)
T PRK05951          9 IFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHH-ETTGYRQHPIQAGIM   87 (296)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccc-cccCCCCCccccCCc
Confidence            468999999999999999999875434578999999999999999999999999995  55555 566  6899999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcc---cCccccchhhHHHHhhhh-HHHHHHHHHhcC
Q psy1910          78 STTDAIIFLAGQLGAGLLILVQ----LNLYTIILGSTSLLFVTLYP---LMKRVTHWAQLTLGMTFN-YGALMGYSAVTG  149 (153)
Q Consensus        78 s~~~a~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~Ys---~~Kr~~~~~~~~~g~~~~-~~~l~g~~a~~g  149 (153)
                      |++|++.++.++..+++.++..    .++..+.+++.+.+..+.||   +.+++..++++..++.++ ..++..++.++|
T Consensus        88 s~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~vlg~~~~~~~  167 (296)
T PRK05951         88 TLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLG  167 (296)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999988887766433    46778888888889999996   333434789999998877 555666888888


Q ss_pred             CCC
Q psy1910         150 CVN  152 (153)
Q Consensus       150 ~~~  152 (153)
                      +++
T Consensus       168 ~~~  170 (296)
T PRK05951        168 NLS  170 (296)
T ss_pred             ccc
Confidence            764

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.88  E-value=1.9e-22  Score=158.13  Aligned_cols=141  Identities=26%  Similarity=0.327  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHH
Q psy1910          10 WLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQ   89 (153)
Q Consensus        10 ~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~   89 (153)
                      .+++.|+.+|...+..  ...++.......++.++.+.++|.+|||+|+|.|+.|+|+++||+++|++|++++..++..+
T Consensus         2 ~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~   79 (257)
T PF01040_consen    2 PLSFLPVLAGLALASG--GPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALIL   79 (257)
T ss_pred             hHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHH
Confidence            4677888888444432  34667778888888889999999999999999999999899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cCccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910          90 LGAGLLILVQLNLYTIILGSTSLLFVTLYP---LMKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN  152 (153)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys---~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~  152 (153)
                      ..+++.+++..++..+.+.++..+..+.|+   .+||++.++++..|++++..+..|+++.+++.+
T Consensus        80 ~~l~l~l~~~~~~~~~~~~~~~~~~~~~Ys~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (257)
T PF01040_consen   80 LLLGLLLALLLGPWFLLILLLGFLLGLLYSPPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPP  145 (257)
T ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhhhhhcceeccchhhHHHhhhHhhhhhhhhcCCccc
Confidence            999999998889988888888877789999   699999999999999999999999999888653

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.87  E-value=2.7e-21  Score=158.03  Aligned_cols=150  Identities=12%  Similarity=0.156  Sum_probs=125.5

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccC--CCCCCCccccCCCCH
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKV--SRTKDRPLVNGSIST   79 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~--~r~~~RPl~sG~is~   79 (153)
                      ++.||++..++..|+.+|.+++....+..++..+++++++.++.|+++|.+|||+|++.|+.+  .++++|++++|.+|+
T Consensus         8 ~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~   87 (317)
T PRK13387          8 KLVEIHTKIASFFPVILGTLFSLYVAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKP   87 (317)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCH
Confidence            678999999999999999999865434578888999999999999999999999998755543  334589999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhhhHHHH-HHHHHhcCC
Q psy1910          80 TDAIIFLAGQLGAGLLIL----VQLNLYTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTFNYGAL-MGYSAVTGC  150 (153)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~~~~~l-~g~~a~~g~  150 (153)
                      |+++..+..+.+++++++    +..++..+.+++.+.+..+.||   + +||++ ++++..++.++...+ .+++.+++.
T Consensus        88 ~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~~~~~~Yt~gP~~l~y~g-LGe~~v~i~~G~~~v~g~~yv~t~~  166 (317)
T PRK13387         88 RNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAIGILYTGGPLPLSRMP-LGEIFSGLTMGFGIFLLAVYINTNT  166 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhhhhcCCCcccccCc-cHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999998854    5568888899999999999998   2 88876 899999988776654 457888877


Q ss_pred             CC
Q psy1910         151 VN  152 (153)
Q Consensus       151 ~~  152 (153)
                      ++
T Consensus       167 ~~  168 (317)
T PRK13387        167 IT  168 (317)
T ss_pred             Cc
Confidence            54

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=99.87  E-value=3.5e-21  Score=156.85  Aligned_cols=139  Identities=22%  Similarity=0.135  Sum_probs=112.8

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHH----HhccccccccccCCCCCCCccccCC
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVP-GCLPDLHTLALFGLGAVIMRGAGCT----INDLWDKDIDSKVSRTKDRPLVNGS   76 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~~~----~Nd~~D~~~D~~~~r~~~RPl~sG~   76 (153)
                      |++||++.....++...+..++... +..+++. .+...++.++.+.++|+    +|||+|+|+|++|+  ++||++||+
T Consensus        18 ~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~-~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~ink--p~rPiasG~   94 (308)
T PRK12887         18 KFSRPHTIIGTSLSVLGLYLIAIAASSNTIALA-NLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINK--PHLPLAAGE   94 (308)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhhccchhhHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCC--CCCCcCCcc
Confidence            6899999999999997776665321 1122222 45566666777788888    99999999999975  499999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----CccccchhhHHHHhhhhHHHHHH
Q psy1910          77 ISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL----MKRVTHWAQLTLGMTFNYGALMG  143 (153)
Q Consensus        77 is~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~----~Kr~~~~~~~~~g~~~~~~~l~g  143 (153)
                      +|++|++.+...+.++++.+++..|+..+.+++.+.++++.||.    +||++..+++......+..+..|
T Consensus        95 ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i~~~g  165 (308)
T PRK12887         95 FSRRQGQRIVIITGILALILAALLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVIVNLG  165 (308)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999993    99999999887665555555444

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.86  E-value=2.2e-20  Score=150.55  Aligned_cols=142  Identities=15%  Similarity=0.066  Sum_probs=110.1

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcH--HHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCH
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDL--HTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSIST   79 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~   79 (153)
                      +++||.+|+....|+..|...++.   ..+|  ..+.+.+......+...|.+|||+|+|+|++|+|+  ||+++|++|+
T Consensus        17 ~~sRP~~wi~t~~~~~~G~~~~g~---~~~~~~~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~--~~i~~G~is~   91 (292)
T PRK13595         17 LISRPALWVNTVGTLVTGVWLTGH---LYTLDPGVLPLLLYLTLPFNLLIYGLNDLADRETDAASPRK--GGWQGARLSP   91 (292)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHhcC---cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC--CCCCcCccCH
Confidence            679999999999999999877643   3555  55667777777899999999999999999999874  7888999999


Q ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhhhHHHHHHHHHhcCC
Q psy1910          80 TDAIIFLAGQLGA----GLLILVQLNLYTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTFNYGALMGYSAVTGC  150 (153)
Q Consensus        80 ~~a~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~  150 (153)
                      +|+..+...+...    ++.+++..|+.++.+.+.+.++.+.||   . +|+++.++++.. ...++|...| .+++|+
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~-~~~g~p~~~~-~~~~g~  168 (292)
T PRK13595         92 GEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSN-AAYALPLALP-ALALGA  168 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHH-HHHHHHHHHH-HHHcCC
Confidence            9999976655555    444566778888888888888999998   3 888888766654 3345555555 344443

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.84  E-value=1.1e-19  Score=146.63  Aligned_cols=146  Identities=17%  Similarity=0.050  Sum_probs=119.9

Q ss_pred             cchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccc--ccccCCCCCCCccccCCCCHHHH
Q psy1910           5 KPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKD--IDSKVSRTKDRPLVNGSISTTDA   82 (153)
Q Consensus         5 rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~--~D~~~~r~~~RPl~sG~is~~~a   82 (153)
                      ||+++.++..|+++|.+++...+ ..+|..++++++++.++|+++|.+|||+|++  .|+.++.+++|++++|.+|++++
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v   79 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREV   79 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-CccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHH
Confidence            89999999999999999997665 6889999999999999999999999999975  57653334689999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH----HHH------HHHHHHHHHHHHHhhccc----CccccchhhHHHHhhhhH-HHHHHHHHh
Q psy1910          83 IIFLAGQLGAGLLILVQ----LNL------YTIILGSTSLLFVTLYPL----MKRVTHWAQLTLGMTFNY-GALMGYSAV  147 (153)
Q Consensus        83 ~~~~~~~~~~~~~~~~~----~~~------~~~~i~~~~~~~~~~Ys~----~Kr~~~~~~~~~g~~~~~-~~l~g~~a~  147 (153)
                      ...+..+.++++.++.+    .++      ..+.+++.+++..+.||.    +|++ .++++..++.++. .+..+++++
T Consensus        80 ~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~-gLGE~~v~i~~G~l~v~g~~yvq  158 (284)
T TIGR00751        80 KTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYA-GLGDISVLVFFGPLAVLGTQYLQ  158 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccC-chHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998877776643    343      456788888888999983    5554 3679999988754 455668899


Q ss_pred             cCCCC
Q psy1910         148 TGCVN  152 (153)
Q Consensus       148 ~g~~~  152 (153)
                      +|+++
T Consensus       159 ~~~~~  163 (284)
T TIGR00751       159 AHRVD  163 (284)
T ss_pred             cCCCC
Confidence            99876

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.79  E-value=1.1e-18  Score=140.59  Aligned_cols=108  Identities=18%  Similarity=0.118  Sum_probs=85.2

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1910          29 LPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILG  108 (153)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~  108 (153)
                      ...+.+.+++.+..++..+++|++|||+|+|+|++| |+ +||+|||++|+++|..++..+.++++.+....     .+.
T Consensus        42 ~~~~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN-~P-~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~  114 (299)
T PRK13592         42 FRIGIQEFVGVFTVFGFWMILRIADDFKDYETDRRL-FP-HRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNN  114 (299)
T ss_pred             CCCchHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhc-CC-CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence            344567788888888999999999999999999995 54 99999999999999999999966666555433     223


Q ss_pred             HHHHHHHhhc-----cc-CccccchhhHHHHhhhhHHHHHH
Q psy1910         109 STSLLFVTLY-----PL-MKRVTHWAQLTLGMTFNYGALMG  143 (153)
Q Consensus       109 ~~~~~~~~~Y-----s~-~Kr~~~~~~~~~g~~~~~~~l~g  143 (153)
                      +...+..+.|     +. +||.+..+|+.++...+.++..|
T Consensus       115 i~~~~i~~lY~~lm~a~~~K~~~l~gNl~Va~ltg~~f~~g  155 (299)
T PRK13592        115 VGWFLFLYIYGTLMSFWFFKRDKIQNSLPLALVTHNPVMMI  155 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccCCCcchhhhhhccchhhhc
Confidence            3333445556     75 99999999999999888777433

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.79  E-value=2.6e-18  Score=138.45  Aligned_cols=148  Identities=19%  Similarity=0.168  Sum_probs=95.7

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH--HHHHHHHHhccccccccccCCCCC-CCccc-cCC
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVI--MRGAGCTINDLWDKDIDSKVSRTK-DRPLV-NGS   76 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~Nd~~D~~~D~~~~r~~-~RPl~-sG~   76 (153)
                      +|++||++|...+.|+++|.++|...+. ..+....+++++.++  .+...|.+|||+|+|.|+.|+||+ +||+. +++
T Consensus        12 ~~l~RP~~~~~~~~p~l~G~~lA~~~~~-~~~~~~~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk~~~r~~~~s~~   90 (282)
T PRK12875         12 LVLSRPRFWLYLAGPVVVGVAYAADSVA-DLFSPAAVALFAYFLFPANVFLYGVNDVFDADTDELNPKKDREREVRYRGD   90 (282)
T ss_pred             HHHhCccchHHHHHHHHHHHHHHhccCc-ccccHHHHHHHHHHHHHHHHHHhcchhhhhhhccccCCCccCCCCccHHHH
Confidence            4789999999999999999999975421 112223344444333  112334479999999999999987 58777 443


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhhhHHHHHHHHHhcCCCC
Q psy1910          77 ISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTFNYGALMGYSAVTGCVN  152 (153)
Q Consensus        77 is~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~~  152 (153)
                      .+...+.   .....+++.+....++......+..++..+.||   . +|+++..+....|+ ..++.+.+|++++|+++
T Consensus        91 ~~~~~~~---~l~~~l~l~l~~~~~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~-~~~~~~~~y~~~tg~~~  166 (282)
T PRK12875         91 RRVLVAV---ALSGALALAFLLVLPPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGL-YILPGVAAYALVSGSLP  166 (282)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHH-HHHHHHHHHHHHcCCCc
Confidence            3333222   223334444444444443333344567889998   4 88887766655554 35888899999999876


Q ss_pred             C
Q psy1910         153 E  153 (153)
Q Consensus       153 ~  153 (153)
                      +
T Consensus       167 ~  167 (282)
T PRK12875        167 P  167 (282)
T ss_pred             H
Confidence            4

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.79  E-value=5.6e-18  Score=136.49  Aligned_cols=145  Identities=17%  Similarity=0.097  Sum_probs=100.9

Q ss_pred             CccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHH-HHHhccccccccccCCCCCCCccccCCCCH
Q psy1910           1 MRLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAG-CTINDLWDKDIDSKVSRTKDRPLVNGSIST   79 (153)
Q Consensus         1 ~rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~   79 (153)
                      .|++||++|+...+|+..|..+|.   +.++| .+++..+.....+..+ |.+|||+|+|.|+.|+|+..|   .|.+|+
T Consensus         5 ~~~~rP~~wi~~a~pf~~g~~la~---~~~~~-~~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~---~g~i~~   77 (282)
T PRK13105          5 LLSSRPISWINTAYPFAAAYLLAG---GEIDW-LFVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV---EGAVLD   77 (282)
T ss_pred             HHhcccHHHhccHHHHHHHHHHHC---CCCCh-HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC---CCccCH
Confidence            378999999999999999888883   24566 4444444333333333 356999999999999998665   388999


Q ss_pred             HHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccc----CccccchhhHHHHhhhhHHHHHHHHHhcCC
Q psy1910          80 TDAII----FLAGQLG-AGLLILVQLNLYTIILGSTSLLFVTLYPL----MKRVTHWAQLTLGMTFNYGALMGYSAVTGC  150 (153)
Q Consensus        80 ~~a~~----~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~----~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~  150 (153)
                      +|...    +..+..+ .++.+....++.++.++.++++..+.||.    +|+++..+++..++.+..+.+.|.+.+++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~~~~  157 (282)
T PRK13105         78 RAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGLVLAGAP  157 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            98733    3333333 33333344478888999999889999983    788888878766655555566665555665


Q ss_pred             CC
Q psy1910         151 VN  152 (153)
Q Consensus       151 ~~  152 (153)
                      ++
T Consensus       158 ~~  159 (282)
T PRK13105        158 FT  159 (282)
T ss_pred             cc
Confidence            54

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.78  E-value=7.8e-18  Score=135.71  Aligned_cols=151  Identities=18%  Similarity=0.099  Sum_probs=124.8

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccc--ccc--cCCCCCCCccccCCC
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKD--IDS--KVSRTKDRPLVNGSI   77 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~--~D~--~~~r~~~RPl~sG~i   77 (153)
                      ++.||+++.+++.|+++|.++|...+...+|..++++++++.+++..+|..|||+|++  .|.  .+.+++++-+.+.++
T Consensus        13 ~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~   92 (303)
T COG1575          13 ELARPKTLPAAIAPVIVGTALAFWYGKSFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSM   92 (303)
T ss_pred             HhcCccchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccC
Confidence            5789999999999999999999876545789999999999999999999999999975  665  334567899999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhccc-Ccc--ccchhhHHHHhhhhHHH-HHHHHHhcC
Q psy1910          78 STTDAIIFLAGQLGAGLLILV----QLNLYTIILGSTSLLFVTLYPL-MKR--VTHWAQLTLGMTFNYGA-LMGYSAVTG  149 (153)
Q Consensus        78 s~~~a~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~Ys~-~Kr--~~~~~~~~~g~~~~~~~-l~g~~a~~g  149 (153)
                      +++..+.+...+......++.    ..+|..+.+|+++.+.++.|+. .|+  +.+++++..|+.++.-. .+.++.+++
T Consensus        93 k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l~v~g~~yiqt~  172 (303)
T COG1575          93 KPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTG  172 (303)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999998888887776653    3567778899999999999995 555  34577999887765555 555999999


Q ss_pred             CCC
Q psy1910         150 CVN  152 (153)
Q Consensus       150 ~~~  152 (153)
                      +++
T Consensus       173 ~~~  175 (303)
T COG1575         173 RLS  175 (303)
T ss_pred             cch
Confidence            875

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.76  E-value=2.1e-17  Score=134.48  Aligned_cols=146  Identities=18%  Similarity=0.077  Sum_probs=119.7

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccc--ccccCCCCCCCccccCCCCH
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKD--IDSKVSRTKDRPLVNGSIST   79 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~--~D~~~~r~~~RPl~sG~is~   79 (153)
                      +.+||+++.++..|+++|.+++...++..+|..+++++++..+.|.++|.+|||+|++  .|+. ++   +..+++..++
T Consensus        17 ~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~---~~~~~~~~~~   92 (304)
T PRK07419         17 AAIKPPMYSVAIMPILVGTAWALGETGVFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKN-KF---HSVVNLTGNK   92 (304)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-cc---cCcccccCcH
Confidence            4689999999999999999999765446889999999999999999999999999987  7875 22   2344666689


Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhhhH-HHHHHHHHhcCC
Q psy1910          80 TDAIIFLAGQLGAGLLILV----QLNLYTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTFNY-GALMGYSAVTGC  150 (153)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~~~-~~l~g~~a~~g~  150 (153)
                      +++...+..+.++++.++.    ..+|..+.+++++.+..+.||   + +|+++ ++++..++.++. .+..++++++|+
T Consensus        93 ~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g~~~~~~YT~gP~~l~y~g-LGE~~v~l~~G~l~v~g~~yv~t~~  171 (304)
T PRK07419         93 SLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFLGYLYQGPPFRLGYQG-LGEPLCFLAFGPLAVAAALYSQTPS  171 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhheccCCCcccCCCC-chHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999888887653    347778889999999999997   3 77776 699999988754 445668999998


Q ss_pred             CC
Q psy1910         151 VN  152 (153)
Q Consensus       151 ~~  152 (153)
                      +|
T Consensus       172 ~~  173 (304)
T PRK07419        172 WS  173 (304)
T ss_pred             CC
Confidence            76

>PLN02922 prenyltransferase

Probab=99.74  E-value=7.6e-17  Score=131.77  Aligned_cols=143  Identities=20%  Similarity=0.115  Sum_probs=111.8

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccc--ccccCCCCCCCccccCCCCH
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKD--IDSKVSRTKDRPLVNGSIST   79 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~--~D~~~~r~~~RPl~sG~is~   79 (153)
                      +..||+++.++..|+++|.++|....+..+|..++++++++++.|.++|.+|||+|++  .|+.++.++.|+.  |  |+
T Consensus        20 ~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~--~--s~   95 (315)
T PLN02922         20 RAIKLPMYSVALVPLTVGAAAAYLQTGLFDARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNLV--G--SR   95 (315)
T ss_pred             HHhCcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCcc--c--CH
Confidence            5689999999999999999998754346899999999999999999999999999976  6775322223443  3  99


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhhhHHHHH-HHHHhcC
Q psy1910          80 TDAIIFLAGQLGAGLLILVQ-----LNLYTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTFNYGALM-GYSAVTG  149 (153)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~~~~~l~-g~~a~~g  149 (153)
                      ++....+..+.++++...+.     .+|..+.+++.+++.++.||   + +||++ ++++..++.++..... .+++++|
T Consensus        96 ~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~g-LGE~~v~i~fG~l~v~g~y~~~~~  174 (315)
T PLN02922         96 RGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKG-LGEPLCFAAFGPLATTAFYLALAS  174 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhcCCcccccCc-chHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999988888888753322     25778889999999999998   3 77764 6888888887655544 4777776

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.73  E-value=1.2e-16  Score=129.10  Aligned_cols=147  Identities=18%  Similarity=0.117  Sum_probs=117.0

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccc--ccccCCCCCCCccccCCCCH
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKD--IDSKVSRTKDRPLVNGSIST   79 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~--~D~~~~r~~~RPl~sG~is~   79 (153)
                      +.+||+++.+++.|+.+|.++|...++..++..+++++++..+.|.++|.+|||+|++  .|+.+..+    ..++..|+
T Consensus         4 ~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~----~~~~~~~~   79 (285)
T TIGR02235         4 AAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHS----IVNLTGSR   79 (285)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCC----cccccCcH
Confidence            5689999999999999999999654446789999999999999999999999999976  57752222    23444578


Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcc---c-CccccchhhHHHHhhhh-HHHHHHHHHhcCC
Q psy1910          80 TDAIIFLAGQLGAGLLILV----QLNLYTIILGSTSLLFVTLYP---L-MKRVTHWAQLTLGMTFN-YGALMGYSAVTGC  150 (153)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~Ys---~-~Kr~~~~~~~~~g~~~~-~~~l~g~~a~~g~  150 (153)
                      +++...+..+..+++.++.    ..+|..+.++.++++..+.||   + +|+++ ++++..++.++ +.+..++++++|+
T Consensus        80 ~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt~gP~~l~y~g-LGE~~v~l~~G~l~v~g~~yvqt~~  158 (285)
T TIGR02235        80 SLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFLGYLYQGPPFRLGYQG-LGEPICWLCFGPLAIAAALYAQSQS  158 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCcccCCCC-ccHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9998888888887777653    356777889999999999998   3 77765 68999998865 4556669999998


Q ss_pred             CCC
Q psy1910         151 VNE  153 (153)
Q Consensus       151 ~~~  153 (153)
                      +++
T Consensus       159 ~~~  161 (285)
T TIGR02235       159 FSL  161 (285)
T ss_pred             CcH
Confidence            764

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PLN02878 homogentisate phytyltransferase

Probab=99.72  E-value=4.6e-17  Score=130.31  Aligned_cols=95  Identities=18%  Similarity=0.158  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy1910          33 HTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTS-  111 (153)
Q Consensus        33 ~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-  111 (153)
                      ...+.+.+++.+++.....+|||+|+|+||+|+  ++||+|||++|+++|+.+...+.++|+.+++..|+..+..++.. 
T Consensus        23 ~~~l~~~~~~l~~niyivglNd~~D~EIDkINk--P~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~~g~~~l~~al~~~  100 (280)
T PLN02878         23 TGLLEALVPALLMNIYIVGLNQLYDIEIDKVNK--PYLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVS  100 (280)
T ss_pred             HHHHHHHHHHHhhhhheechhhhhhhcccccCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence            345667788888999999999999999999975  49999999999999999999999999999999988766555544 


Q ss_pred             HHHHhhccc------Cccccchhh
Q psy1910         112 LLFVTLYPL------MKRVTHWAQ  129 (153)
Q Consensus       112 ~~~~~~Ys~------~Kr~~~~~~  129 (153)
                      .+++++||.      .||+.....
T Consensus       101 ~~lg~~YS~~lp~lr~k~~~~~aa  124 (280)
T PLN02878        101 FVLGTAYSINLPLLRWKRSAVAAA  124 (280)
T ss_pred             HHHHHHHHccCCCcccHHHHHHHH
Confidence            477888982      566655544

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.61  E-value=5.9e-15  Score=118.50  Aligned_cols=144  Identities=16%  Similarity=0.101  Sum_probs=92.9

Q ss_pred             ccccchHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHH
Q psy1910           2 RLDKPIGSWLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTD   81 (153)
Q Consensus         2 rl~rP~~~~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~   81 (153)
                      |+.|+.+..........+.....    ..++.......++.++.+.++|++|||+|+|+|++|+|  +||.++++...+.
T Consensus         9 ~~~~~~~~~~a~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~--~R~~~s~~~~~~~   82 (285)
T PRK12872          9 KLFRYGNLLIAALGQSLVYMASL----LLGLPISWLLLLITFLIAAAVYIINYLTDLEEDIINKP--ERVVFSETKAYGL   82 (285)
T ss_pred             HHHHHccHHHHHHHHHHHHHHHH----HHcChhHHHHHHHHHHHHHHHHHhhhhcCCchhhcCCC--chHHHHHHHHHHH
Confidence            34455555554444444322111    12233455677788899999999999999999999775  7888844444444


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccc-----CccccchhhHHHHhhhhHHH-HHHHHHhcCCC
Q psy1910          82 AIIFLAGQLGAGLLIL-VQLNLYTIILGSTSLLFVTLYPL-----MKRVTHWAQLTLGMTFNYGA-LMGYSAVTGCV  151 (153)
Q Consensus        82 a~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~Ys~-----~Kr~~~~~~~~~g~~~~~~~-l~g~~a~~g~~  151 (153)
                      ++.+..+...+++.+. ...|+..+.+++++.+..+.||.     +||.+.++++..|...+..+ +.++++.++.+
T Consensus        83 ~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~~~~~  159 (285)
T PRK12872         83 FLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLTI  159 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhccccc
Confidence            3333333333333332 22478888888888888999983     67788899999998865544 55677766643

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.40  E-value=4.3e-12  Score=103.15  Aligned_cols=91  Identities=14%  Similarity=0.075  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--
Q psy1910          43 VIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYTIILGSTSLLFVTLYPL--  120 (153)
Q Consensus        43 ~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ys~--  120 (153)
                      .+...++|++|||+|+|+|+.| |+ +||.+    +++.++.++.+..++|+.+++..|+..  +++++.+.++.|+.  
T Consensus        68 ~L~~~s~~~iNd~~D~eiD~IN-~P-~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~ll~~l~g~lYS~Gl  139 (307)
T PRK13591         68 GLIIYSVYTLDRALDSEEDAVN-RS-ELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LAFLPFITGYLYSKGI  139 (307)
T ss_pred             HHHHHHHHHHhhhccchhhhcc-Cc-ccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHhcCCC
Confidence            3678899999999999999995 54 99986    999999999999999999999888753  56677778899983  


Q ss_pred             --------CccccchhhHHHHhhhhHHHH
Q psy1910         121 --------MKRVTHWAQLTLGMTFNYGAL  141 (153)
Q Consensus       121 --------~Kr~~~~~~~~~g~~~~~~~l  141 (153)
                              +|+.+.++|+++|+..+....
T Consensus       140 k~~P~plklK~~~glGnl~V~i~~G~~i~  168 (307)
T PRK13591        140 KIGKFALKLKGGLGVKNIVVGITWGGFIA  168 (307)
T ss_pred             CCCCccccccCCCchhHHHHHHHHHHHHH
Confidence                    456677889999988776544

>KOG4581|consensus

Probab=98.31  E-value=6.9e-08  Score=75.76  Aligned_cols=147  Identities=22%  Similarity=0.176  Sum_probs=109.2

Q ss_pred             ccchHHHHHHHHHHHHHHHhcc-CC-CCCcHHHHHHHHHHHHHHHHHHHHHhccccc--cccccCCCCCCCccccCCCCH
Q psy1910           4 DKPIGSWLLFWPCGWSISMAAV-PG-CLPDLHTLALFGLGAVIMRGAGCTINDLWDK--DIDSKVSRTKDRPLVNGSIST   79 (153)
Q Consensus         4 ~rP~~~~~~~~p~~~g~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~--~~D~~~~r~~~RPl~sG~is~   79 (153)
                      .||-..-.+..|+..|.++|.. ++ ..+++..++++.+..+..++++|..|.|+|.  .+|.+.  ..+|.++...+.+
T Consensus        68 lrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl~a~avlavh~agnlvntyfdf~kgid~kk--addrtlvd~il~~  145 (359)
T KOG4581|consen   68 LRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKK--ADDRTLVDHILEK  145 (359)
T ss_pred             hcccccccccchHhhhhHHHHhhccccchhHHHHHHHHhhheeeecccchhhhhhhhhhcccccc--ccchhHHHHhcCh
Confidence            5788888899999999999863 22 2245666788888888999999999999995  588773  3489999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHhhcc--c-CccccchhhHHHHhhhhHHHHHHHHHhcC
Q psy1910          80 TDAIIFLAGQLGAGLLIL---VQLNLYT----IILGSTSLLFVTLYP--L-MKRVTHWAQLTLGMTFNYGALMGYSAVTG  149 (153)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~---~~~~~~~----~~i~~~~~~~~~~Ys--~-~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g  149 (153)
                      .++.-++.++..+|+..+   ..++|.-    ..+-+-+..-.+.|+  . +|....-+-+++=..+.+.+++.+..++|
T Consensus       146 ~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggigfkyialgdliili~fgpiavlfaf~~q~g  225 (359)
T KOG4581|consen  146 DDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGIGFKYIALGDLIILILFGPIAVLFAFAIQTG  225 (359)
T ss_pred             hheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecccceEEEeccCEEEEEeechHHHHHHHHHhcC
Confidence            999999998888877654   3344431    122223344578898  3 78776555555555677888899999999


Q ss_pred             CCC
Q psy1910         150 CVN  152 (153)
Q Consensus       150 ~~~  152 (153)
                      +++
T Consensus       226 ~l~  228 (359)
T KOG4581|consen  226 HLA  228 (359)
T ss_pred             cee
Confidence            864

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=96.34  E-value=0.11  Score=42.16  Aligned_cols=85  Identities=9%  Similarity=0.065  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHH
Q psy1910          11 LLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQL   90 (153)
Q Consensus        11 ~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~   90 (153)
                      .++.+.+.|.....   +..++.. .+...+..+...+...+||+-|.|.||++.+   |-+| =++-++.+..++..+.
T Consensus       142 ~f~~~~v~G~~~~~---~~~~~~~-~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~---~Tlp-v~lG~~~a~~~~~~l~  213 (282)
T PRK13105        142 HFVSPALYGLVLAG---APFTAAL-WAVLAAFFLWGMASHAFGAVQDVVADREAGI---ASIA-TVLGARRTVRLAVGLY  213 (282)
T ss_pred             HHHHHHHHHHHHhh---ccccHHH-HHHHHHHHHHHHHHHHHHhCcchHhHHHcCC---ccch-HHhcHHHHHHHHHHHH
Confidence            33444555554442   2233322 3334445556888889999999999998543   3332 3677888888888888


Q ss_pred             HHHHHHHHHHHHH
Q psy1910          91 GAGLLILVQLNLY  103 (153)
Q Consensus        91 ~~~~~~~~~~~~~  103 (153)
                      .++.++....++.
T Consensus       214 ~~a~~~~~~~~~~  226 (282)
T PRK13105        214 AAAAVLMLALPWP  226 (282)
T ss_pred             HHHHHHHHHHHhH
Confidence            8888776555544

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=96.32  E-value=0.14  Score=41.11  Aligned_cols=37  Identities=22%  Similarity=0.164  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910          39 GLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS   76 (153)
Q Consensus        39 ~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~   76 (153)
                      .+..++.+..-..+||..|+|.|++..++ .-|+.-|+
T Consensus       164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~-tlpv~~G~  200 (282)
T TIGR01475       164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLH-SIPARFGI  200 (282)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCC-chHHHhch
Confidence            44455677777889999999999986664 77777773

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=95.97  E-value=0.36  Score=38.60  Aligned_cols=50  Identities=20%  Similarity=0.033  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHH
Q psy1910          41 GAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGL   94 (153)
Q Consensus        41 ~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~   94 (153)
                      ..++....-+.+||.-|+|-|+++.++ .=|..-|+   +.+..+...+..+..
T Consensus       169 ~~fl~~~~~~~~~d~~D~e~D~~~G~~-Tlpv~lG~---~~t~~~~~~~~~~~~  218 (285)
T PRK12872        169 FIFLKSFIREIVFDIKDIEGDRKSGLK-TLPIVLGK---ERTLKFLLILNLLFL  218 (285)
T ss_pred             HHHHHHHHHHHHHhcccchhHHHcCCc-ccchhcch---HHHHHHHHHHHHHHH
Confidence            344556667789999999999996653 56665665   444444444444333

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=95.30  E-value=0.45  Score=38.97  Aligned_cols=61  Identities=11%  Similarity=-0.025  Sum_probs=36.3

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHH
Q psy1910          30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLL   95 (153)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~   95 (153)
                      .++..++..+. .-+..+..+..||+-|+|.|+++.|. .-|.   ++-++.+..+...+...+..
T Consensus       172 ~~~~~~~~sl~-~gll~~~IL~~Nn~rD~e~D~~~Gk~-TL~v---~lG~~~a~~ly~~l~~~ay~  232 (304)
T PRK07419        172 WSLIPLAASII-LGLATSLILFCSHFHQVEDDLAAGKR-SPIV---RLGTKRGAQLLPWIVGLIYA  232 (304)
T ss_pred             CCHHHHHHHHH-HHHHHHHHHHHcCCcchhhHHHcCCc-ceee---eechHhHHHHHHHHHHHHHH
Confidence            44444333333 33567788889999999999997653 4454   34445555544444444433

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=95.10  E-value=0.36  Score=39.39  Aligned_cols=46  Identities=20%  Similarity=0.130  Sum_probs=32.6

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCC
Q psy1910          30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSI   77 (153)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~i   77 (153)
                      .++..+++ .+..++.+..-...||+.|+|-|+++.++ .-|+.-|+-
T Consensus       173 ~~~~~~ll-~~~~~~w~~~~~~~~a~~D~e~D~~~G~~-Tlpv~~G~~  218 (297)
T PRK12871        173 PDMTALLY-MVFFYPWTMAHLGLNDFIDLENDRARGMK-SIAVLYGMK  218 (297)
T ss_pred             CcHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHcCCe-eeeeeechH
Confidence            44443333 34455677888899999999999997654 678777764

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=95.07  E-value=0.26  Score=39.65  Aligned_cols=46  Identities=22%  Similarity=0.229  Sum_probs=32.4

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCC
Q psy1910          30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSI   77 (153)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~i   77 (153)
                      .++..+ +..+..++.+..-...|++.|+|.|+++.++ .-|..-|+=
T Consensus       163 ~~~~~~-~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~-tl~v~~G~~  208 (285)
T PRK12847        163 LDIEAI-LLYIGCIFWTIGYDTIYAYQDKKDDLKIGVK-STAIYFGNK  208 (285)
T ss_pred             CcHHHH-HHHHHHHHHHHHHHHHHHhccHhhHHHcCCc-hhHHHhccc
Confidence            445433 3444556777778899999999999997664 667766653

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=95.05  E-value=0.6  Score=37.83  Aligned_cols=57  Identities=9%  Similarity=0.049  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1910          41 GAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLN  101 (153)
Q Consensus        41 ~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~~  101 (153)
                      +..+.+.+-..+||+.|+|.|++..+ +.=|.   ++-++.+..++..+..++..+....+
T Consensus       173 a~~l~~~~~~~in~i~Die~D~~aGi-~Tlav---~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        173 GGWLWAMGMHTFSAIPDIEPDRAAGI-RTTAT---VLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHcCC-ccchh---hccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            34566777789999999999998542 23333   56677777777777777766655444

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=95.02  E-value=0.5  Score=37.74  Aligned_cols=35  Identities=17%  Similarity=0.128  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910          41 GAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS   76 (153)
Q Consensus        41 ~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~   76 (153)
                      ..++.+.+-+..||+.|+|-|++..++ .=|..-|+
T Consensus       163 ~~~~~~~~~~~~~~~~D~e~D~~~G~~-Tl~v~~G~  197 (279)
T PRK12884        163 MAFLMTLGREIMKDIEDVEGDRLRGAR-TLAILYGE  197 (279)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHcCCe-eechHhcH
Confidence            444566677899999999999996543 55655554

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=94.97  E-value=0.89  Score=36.91  Aligned_cols=62  Identities=19%  Similarity=0.085  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910          10 WLLFWPCGWSISMAAVPGCLPDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS   76 (153)
Q Consensus        10 ~~~~~p~~~g~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~   76 (153)
                      +...+|.+.|.....  +. .++...++ .+..++.+.+-..+|++.|+|.|++...+ .-|..-|+
T Consensus       148 ~~~~~~~l~G~~av~--g~-~~~~~~~l-~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~-slpv~~G~  209 (291)
T PRK12874        148 LSLGLAPIAGVVAVL--GE-IPLWSVFL-ALGVMFWVAGFDLLYSLQDMEFDKKRGLH-SIPSKFGE  209 (291)
T ss_pred             HHHHHHHHHHHHHHc--CC-CcHHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHcCCC-cccHHhhh
Confidence            344556666644432  22 34433333 34455777777899999999999986543 66776665

>PLN02922 prenyltransferase

Probab=94.96  E-value=0.47  Score=39.05  Aligned_cols=54  Identities=7%  Similarity=-0.125  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHH
Q psy1910          36 ALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAG   93 (153)
Q Consensus        36 ~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~   93 (153)
                      ++..+..-+..+..+..||+.|+|.|+++.|. .-|..   +-++.+..+...+...+
T Consensus       191 ~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~-TL~v~---lG~~~a~~l~~~l~~~~  244 (315)
T PLN02922        191 LSASVLVGLTTTLILFCSHFHQIDGDRAVGKM-SPLVR---LGTEKGSRVVRWAVLLL  244 (315)
T ss_pred             HHHHHHHHHHHHHHHHHccCcchhhHHHcCcc-ceeeE---EChHHHHHHHHHHHHHH
Confidence            34444455788888999999999999997653 44543   44455555444444433

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=94.88  E-value=1.2  Score=35.97  Aligned_cols=45  Identities=20%  Similarity=0.214  Sum_probs=30.5

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910          30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS   76 (153)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~   76 (153)
                      .++...++ .+...+.+.+-..+|++.|+|-|++... |.-|..-|+
T Consensus       157 ~~~~~~ll-~~~~~~w~~~~~~i~a~~D~e~D~~~Gv-~sl~v~~G~  201 (284)
T PRK12888        157 WSWPAVLL-GLAVGLWIGGFDLIYACQDAEVDRRIGV-RSVPARFGV  201 (284)
T ss_pred             CCHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHCCC-cCcchhhCc
Confidence            45544433 3345567777889999999999998553 356665554

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=94.81  E-value=0.65  Score=38.05  Aligned_cols=45  Identities=22%  Similarity=0.203  Sum_probs=29.5

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910          30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS   76 (153)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~   76 (153)
                      .++..++.... ..+...+-...||+.|+|.|++..++ .-|+.-|+
T Consensus       187 ~~~~~~l~~~~-~~l~~~~~~~~~d~~D~e~D~~aG~~-Tlpv~~G~  231 (314)
T PRK07566        187 PSWPIVILALL-YSLGAHGIMTLNDFKSVEGDRQLGLR-SLPVVFGE  231 (314)
T ss_pred             CCHHHHHHHHH-HHHHHHHHHHHHHHHHhHhHHHcCCc-ccceeEcH
Confidence            44544444333 33456667899999999999996543 66776664

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=94.77  E-value=0.65  Score=38.19  Aligned_cols=54  Identities=22%  Similarity=0.167  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHH
Q psy1910          38 FGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLL   95 (153)
Q Consensus        38 ~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~   95 (153)
                      ..+...+..+.....||+.|+|.|+++.|. .-|.   ++-++.+..+...+...+..
T Consensus       194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~-TL~v---~lG~~~a~~l~~~l~~~a~l  247 (317)
T PRK13387        194 ISLPIIFTIANIMLANNLRDLDEDIKNHRY-TLVY---YIGREKGVVLFAILFYASYL  247 (317)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhHHHcCCe-eeee---eEcHHhHHHHHHHHHHHHHH
Confidence            444455666777899999999999997653 4444   44455666555555554443

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=94.53  E-value=0.81  Score=37.56  Aligned_cols=41  Identities=17%  Similarity=0.084  Sum_probs=29.2

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCcc
Q psy1910          30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPL   72 (153)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl   72 (153)
                      .+|. .++..+.+.+..+..+..|+..|.|.|+++.|. .-|.
T Consensus       174 ~~~~-~ll~slp~gil~~~Il~aNNirDie~D~~~gk~-TLav  214 (303)
T COG1575         174 LSWA-ILLPSLPVGILIANILLANNLRDIEEDIRNGKY-TLAV  214 (303)
T ss_pred             chHH-HHHHHHHHHHHHHHHHHhcccccchhHHhcCCc-ceee
Confidence            4554 344445555788888999999999999997753 4444

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=94.41  E-value=0.7  Score=37.48  Aligned_cols=61  Identities=7%  Similarity=-0.118  Sum_probs=38.6

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHH
Q psy1910          30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLL   95 (153)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~   95 (153)
                      .+|..++..+ -.-+..+..+..||.-|+|.|+++.|+ .-|.   ++-++.+..+...+...+.+
T Consensus       159 ~~~~~~l~sl-~~gl~~~~iL~~Nn~rD~e~D~~~Gk~-TL~v---~lG~~~a~~l~~~l~~~~y~  219 (285)
T TIGR02235       159 FSLIPWKASI-LVGLATTLILFCSHFHQVEDDLAHGKR-SPVV---RLGTKLAAKIVPWVISLSYV  219 (285)
T ss_pred             CcHHHHHHHH-HHHHHHHHHHHhcCCccchhHHHcCCc-ceeh---eecHHhHHHHHHHHHHHHHH
Confidence            4555444333 333678888899999999999997643 4444   44456665555555554444

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=94.37  E-value=1  Score=36.19  Aligned_cols=62  Identities=18%  Similarity=0.174  Sum_probs=37.6

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHH
Q psy1910          30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLI   96 (153)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~   96 (153)
                      .++..+++ .+...+........||+.|+|.|+++.|+ .-|..   +.++.+..+...+..++.+.
T Consensus       166 ~~~~~~~~-~l~~~l~~~~~~~~n~~~D~~~D~~~G~~-Tl~v~---lG~~~a~~~~~~l~~~~~~~  227 (293)
T PRK06080        166 VDSAVFLP-ALPCGLLIGAVLLANNIRDIETDRENGKN-TLAVR---LGDKNARRLHAALLALAYLC  227 (293)
T ss_pred             CCHHHHHH-HHHHHHHHHHHHHhcCCCcchhHHHcCCe-eEEee---ECcHhHHHHHHHHHHHHHHH
Confidence            34443333 33444667888899999999999996543 44543   44555555555555544443

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=94.30  E-value=1  Score=36.32  Aligned_cols=47  Identities=21%  Similarity=0.142  Sum_probs=32.8

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCC
Q psy1910          30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSIS   78 (153)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is   78 (153)
                      .++...+ ..++.++.+.+-...|++.|+|.|++... +.=|..-|+-+
T Consensus       158 ~~~~~~l-l~~~~~lw~~~~~~~~a~~D~e~D~~~G~-~tlpv~~G~~~  204 (281)
T TIGR01474       158 LSTAAWV-LYLANILWTLGYDTIYAMQDKEDDIKIGV-KSTALRFGDNT  204 (281)
T ss_pred             CcHHHHH-HHHHHHHHHHHHHHHHHHhhHHhHHHcCC-CcccHHhhhhh
Confidence            4444332 34556677788889999999999998554 36777777543

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=93.92  E-value=0.64  Score=37.26  Aligned_cols=35  Identities=20%  Similarity=0.120  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910          41 GAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS   76 (153)
Q Consensus        41 ~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~   76 (153)
                      ..++.+.+-...||+.|+|.|++..++ .-|..-|+
T Consensus       162 ~~f~~~~~~~~~~~~~D~~~D~~~G~~-tlpv~~G~  196 (279)
T PRK09573        162 CAFFSTWSREIVKDIEDIEGDLKENVI-TLPIKYGI  196 (279)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHCCCc-cccHHhhH
Confidence            334455566778999999999986654 66776663

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=93.88  E-value=1.6  Score=35.81  Aligned_cols=46  Identities=22%  Similarity=0.121  Sum_probs=31.2

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCC
Q psy1910          30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSI   77 (153)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~i   77 (153)
                      .++..+++ .+..++.+..-..++++.|+|-|++... +.-|..-|+=
T Consensus       190 ~~~~~~~l-~~~~~~w~~~~~~~~a~~D~e~D~~aGi-~slpv~~G~~  235 (314)
T PRK12878        190 LSLAAVLL-YAGSIAWTIGYDTIYAHQDKEDDALIGV-KSTARLFGDH  235 (314)
T ss_pred             CchHHHHH-HHHHHHHHHHHHHHHHhhhHhhHHHcCC-cccchHhchh
Confidence            45544333 3445567777788899999999998543 3667766663

>PLN00012 chlorophyll synthetase; Provisional

Probab=93.72  E-value=1.8  Score=36.49  Aligned_cols=45  Identities=16%  Similarity=0.031  Sum_probs=30.3

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910          30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS   76 (153)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~   76 (153)
                      .++..+++.+ ...+...+-...||+-|+|.|++... +.-|..-|+
T Consensus       250 ~s~~~illal-~~~l~~lai~ivnd~~Die~Dr~aG~-~TLpV~~G~  294 (375)
T PLN00012        250 LTPDVVVLTL-LYSIAGLGIAIVNDFKSIEGDRALGL-QSLPVAFGV  294 (375)
T ss_pred             CCHHHHHHHH-HHHHHHHHHHHHhhhcchhhHHHcCC-cccceeech
Confidence            4444444433 33456777888999999999998653 366776665

>PRK13591 ubiA prenyltransferase; Provisional

Probab=93.61  E-value=0.8  Score=37.70  Aligned_cols=65  Identities=17%  Similarity=0.203  Sum_probs=36.2

Q ss_pred             HHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHH---HHHHH-----HHHHHHHHH-HHHHHHhhcc
Q psy1910          51 TINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLL---ILVQL-----NLYTIILGS-TSLLFVTLYP  119 (153)
Q Consensus        51 ~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~---~~~~~-----~~~~~~i~~-~~~~~~~~Ys  119 (153)
                      .+||+-|.|-|+++.|+ .-|+.=|+   +.+..+...+...+.+   .+...     .|...+.++ .+..+...|+
T Consensus       197 iindirDiEGDr~~G~k-TLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~  270 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIK-TLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYS  270 (307)
T ss_pred             HHHHhhhhHhHHHcCCe-eEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHc
Confidence            68999999999996553 56665553   3333333333333322   22222     233444444 3456777886

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=93.50  E-value=1.5  Score=34.97  Aligned_cols=52  Identities=21%  Similarity=0.101  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHH
Q psy1910          39 GLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGL   94 (153)
Q Consensus        39 ~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~   94 (153)
                      .+..++...+-..+||+.|.|-|++..++ .=|..-|+   +.+......+..+.+
T Consensus       163 ~~~~fl~~~~~~~~~~~~D~e~D~~~G~~-tlpv~~G~---~~t~~~~~~~~~~~~  214 (276)
T PRK12882        163 FALAALATLAREIIKDVEDIEGDRAEGAR-TLPILIGV---RKALYVAAAFLLVAV  214 (276)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHcCCc-cccHHhhH---HHHHHHHHHHHHHHH
Confidence            33344555677899999999999986543 56665554   444454444444333

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=92.79  E-value=0.77  Score=37.52  Aligned_cols=53  Identities=15%  Similarity=0.173  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHH
Q psy1910          39 GLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLI   96 (153)
Q Consensus        39 ~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~   96 (153)
                      .++.++.+.+-.++|+..|+|.|++...+ .-|+.=|+-    +..++..+..+.+.+
T Consensus       183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~-Slpv~~G~~----a~~~~~~~~~~~v~l  235 (300)
T PRK13106        183 VIGTILWAAGFDLYNHIPDAEFDREMGLH-SFAVVLGKW----ALTFAGLNQLFSVVL  235 (300)
T ss_pred             HHHHHHHHHHHHHHHHccchhhHHHCCCC-ccHHHHhhh----HHHHHHHHHHHHHHH
Confidence            44556667777789999999999986543 667766633    333444444444433

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=92.72  E-value=3.4  Score=33.55  Aligned_cols=39  Identities=13%  Similarity=-0.058  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910          37 LFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS   76 (153)
Q Consensus        37 l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~   76 (153)
                      +..++.++...+=.++.++.|+|.|++..- |.-|+.=|+
T Consensus       163 ~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv-~S~a~~fG~  201 (286)
T PRK12895        163 IIFISSSLWIAGFDIIYVIPDIEYDKINGL-KTIMNTYGI  201 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhHHHcCC-CchHHHHCC
Confidence            344556666677779999999999998542 355554443

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=92.58  E-value=2.3  Score=34.43  Aligned_cols=60  Identities=15%  Similarity=0.198  Sum_probs=36.1

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHH
Q psy1910          30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGL   94 (153)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~   94 (153)
                      .++..++.. +...+..+.....||.-|+|.|+++.|+ .-|.   ++-++.+..+...+...+.
T Consensus       162 ~~~~~ll~s-l~~g~l~~~il~~Nn~~D~~~D~~~Gk~-Tl~v---~lG~~~a~~l~~~l~~~ay  221 (284)
T TIGR00751       162 VDWVGILPA-VATGLLACAVLNINNLRDIPTDARAGKN-TLAV---RLGDARTRMYHQGLLAVAG  221 (284)
T ss_pred             CCHHHHHHH-HHHHHHHHHHHHHcCcccchhHHHcCCE-eehh---hcchHhHHHHHHHHHHHHH
Confidence            445444333 3233455777889999999999997643 3444   4445565555555544443

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=92.48  E-value=0.84  Score=37.40  Aligned_cols=36  Identities=22%  Similarity=0.097  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHhccccccccccCCCCCCCccccC
Q psy1910          39 GLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNG   75 (153)
Q Consensus        39 ~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG   75 (153)
                      .+..++...+-..+||+.|+|-|+++.++ .=|+.=|
T Consensus       188 ~~~~~~~~~~~~l~~di~D~egD~~~Gi~-Tlav~lG  223 (308)
T PRK12887        188 TLFVLVFTFAIAIFKDIPDMEGDRQYQIT-TFTLRLG  223 (308)
T ss_pred             HHHHHHHHHHHHHHHhccchhhHHHcCCc-chhHHHh
Confidence            33445666777889999999999997653 4455444

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=92.35  E-value=1.4  Score=36.54  Aligned_cols=35  Identities=17%  Similarity=0.061  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910          41 GAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS   76 (153)
Q Consensus        41 ~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~   76 (153)
                      ...+...+-..+||+.|+|-|++..++ .-|+.=|+
T Consensus       188 ~~~l~~~~~~~i~d~~D~egD~~~G~k-TlpV~~G~  222 (331)
T PRK12392        188 LNFFMAIALIIMNDFKSVEGDKEGGLK-SLTVMIGA  222 (331)
T ss_pred             HHHHHHHHHHHHHcccchhhHHHcCCe-eeEeEEcH
Confidence            344567777789999999999996553 66665554

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=92.27  E-value=0.96  Score=36.28  Aligned_cols=41  Identities=20%  Similarity=0.188  Sum_probs=28.0

Q ss_pred             HHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHH
Q psy1910          44 IMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAG   88 (153)
Q Consensus        44 ~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~   88 (153)
                      +...+....||+.|+|-|+++.|+ .-|..-|+   +.+..+...
T Consensus       172 l~~~~i~~~nd~~D~~~D~~~G~~-Tl~v~lG~---~~a~~l~~~  212 (283)
T TIGR01476       172 LGAHGIMTLNDFKSVEGDRQLGLR-SLPVMIGV---KRAAIVAVT  212 (283)
T ss_pred             HHHHHHHHHHhccchhhHHHcCCc-CcceEEcH---HHHHHHHHH
Confidence            456667899999999999996553 56666555   444444333

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=92.26  E-value=1  Score=36.81  Aligned_cols=44  Identities=18%  Similarity=0.186  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHH
Q psy1910          44 IMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLG   91 (153)
Q Consensus        44 ~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~   91 (153)
                      +...+-...||+.|+|.|+++.|+ .=|..-|   ++.+......+..
T Consensus       194 l~~~~i~~~n~~~D~e~D~~~G~~-Tlpv~lG---~~~a~~~~~~l~~  237 (306)
T TIGR02056       194 IAGLGIAIVNDFKSVEGDRALGLQ-SLPVAFG---IETAAWICVGAID  237 (306)
T ss_pred             HHHHHHHHHHHccChHHHHHcCCc-CcchhcC---hHHHHHHHHHHHH
Confidence            466677789999999999986543 5555444   4555555444433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=91.75  E-value=3.5  Score=33.19  Aligned_cols=55  Identities=20%  Similarity=0.082  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHH
Q psy1910          35 LALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAG   93 (153)
Q Consensus        35 ~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~   93 (153)
                      ..+..++..+...+--+++|+.|+|-|+++..+ .-|..-   -++.+..++....+..
T Consensus       169 ~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~-s~~~~~---G~~~a~~l~~~~~~~~  223 (289)
T COG0382         169 AWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLK-SLPVLF---GIKKALALALLLLLAS  223 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCccchHhcCCc-chHHHh---CchhHHHHHHHHHHHH
Confidence            344445556677777799999999999996654 345433   3455555555555333

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=91.37  E-value=1.1  Score=35.89  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910          43 VIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS   76 (153)
Q Consensus        43 ~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~   76 (153)
                      ++.+.+-...||..|+|-|++..++ .=|..-|+
T Consensus       164 fl~~~~~~~~~~~~D~e~D~~~G~~-Tlpv~~G~  196 (277)
T PRK12883        164 FLVNVAREIMKDIEDIEGDKAKGAK-TLPIIIGK  196 (277)
T ss_pred             HHHHHHHHHHhhhhhhccHHHcCCc-CcChHhcH
Confidence            3444556677999999999997654 66776665

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=91.30  E-value=6.5  Score=31.83  Aligned_cols=49  Identities=18%  Similarity=0.164  Sum_probs=33.0

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHH
Q psy1910          30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTT   80 (153)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~   80 (153)
                      .++... +..+..++.+.+-..+|++.|+|-|++...+ .-|+.-|+=+..
T Consensus       164 ~~~~~~-~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~-slav~~G~~~~~  212 (290)
T PRK12870        164 LDLGTW-LLWAATVFWTLGFDTVYAMSDREDDLRIGVN-SSAIFFGRYAPE  212 (290)
T ss_pred             CCHHHH-HHHHHHHHHHHHHHHHHHhhhHhhHHHCCCc-chhHHhccccHH
Confidence            344333 3344566788888899999999999986543 566665654433

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=91.18  E-value=4.8  Score=32.64  Aligned_cols=40  Identities=13%  Similarity=0.114  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHH
Q psy1910          42 AVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIF   85 (153)
Q Consensus        42 ~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~   85 (153)
                      ..+..+.....||..|+|.|+++.|+ .=|.   ++.++.+..+
T Consensus       180 ~~l~~~~il~~n~~~D~e~D~~~G~~-Tlav---~lG~~~a~~~  219 (296)
T PRK05951        180 LGLLMALVLLSNNLRDIEDDERKGIP-TLAV---IFGRRGAALY  219 (296)
T ss_pred             HHHHHHHHHHHCCCccchhHHHCCCe-eeee---eEcHhhHHHH
Confidence            33556778899999999999986542 3333   5666666443

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=89.94  E-value=5  Score=32.26  Aligned_cols=41  Identities=24%  Similarity=0.225  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCCC
Q psy1910          37 LFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSIS   78 (153)
Q Consensus        37 l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is   78 (153)
                      +..+..++-+..-...|++.|+|-|++... |.-|+.-|+=+
T Consensus       166 ~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~-~tlpv~~G~~~  206 (282)
T PRK12848        166 LLFLANILWTVAYDTQYAMVDRDDDLKIGI-KSTAILFGRYD  206 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHhhHHHcCC-ccccHHhcccc
Confidence            444556667777778999999999998654 36677766543

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=87.78  E-value=4.4  Score=31.20  Aligned_cols=24  Identities=29%  Similarity=0.242  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHhccccccccccCCC
Q psy1910          43 VIMRGAGCTINDLWDKDIDSKVSR   66 (153)
Q Consensus        43 ~~~~~~~~~~Nd~~D~~~D~~~~r   66 (153)
                      .+........||+-|+|.|++..|
T Consensus       156 ~~~~~~~~~~~~~~D~~~D~~~g~  179 (257)
T PF01040_consen  156 FLLIFAIMFFNDIRDIEGDRKAGR  179 (257)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHcCC
Confidence            456677778889999999987554

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=87.61  E-value=14  Score=30.00  Aligned_cols=46  Identities=22%  Similarity=0.229  Sum_probs=29.5

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCC
Q psy1910          30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSI   77 (153)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~i   77 (153)
                      .++... +..+..++.+.+-..+|++.|+|.|++... |.-|+.-|+=
T Consensus       160 ~~~~~~-ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi-~slpv~~G~~  205 (291)
T PRK12886        160 IELPAI-LLGLAVLFWVAGFDILYALQDLEFDRKEGL-HSIPAKLGVN  205 (291)
T ss_pred             CcHHHH-HHHHHHHHHHHHHHHHHHhccHHhHHHcCC-cCcchhcCch
Confidence            344433 333444455666668899999999998554 3677777763

>PRK13595 ubiA prenyltransferase; Provisional

Probab=87.09  E-value=15  Score=30.02  Aligned_cols=103  Identities=8%  Similarity=-0.015  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHhccccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc-c-
Q psy1910          43 VIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSISTTDAIIFLAGQLGAGLLILVQLNLYT-IILGSTSLLFVTLY-P-  119 (153)
Q Consensus        43 ~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~Y-s-  119 (153)
                      .+...+...+-|+.|.|-||+..- +.=|.   ++.++.+..++..+.+++..+....++.. +.+.+.......-| + 
T Consensus       179 ~~w~~g~dii~ai~DiegDr~~Gi-~Slpv---~lG~r~a~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (292)
T PRK13595        179 MAWSVGKHAFDAAQDIPADRAAGT-RTVAT---TLGVRGTALYALAWFLLAGALLWPVSRLTALALWLICGGMALALWRR  254 (292)
T ss_pred             HHHHHHHHHHHhccChHhHHHcCC-eechH---HhCcHhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence            344578889999999999998432 23343   45567788888888888877766655442 23333333222222 1 


Q ss_pred             -------cCccccchhhHHHHhhhhHHHHHHHHHhcCCC
Q psy1910         120 -------LMKRVTHWAQLTLGMTFNYGALMGYSAVTGCV  151 (153)
Q Consensus       120 -------~~Kr~~~~~~~~~g~~~~~~~l~g~~a~~g~~  151 (153)
                             -.-|+..+-|.+.|+...+..+  |..+.|..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~  291 (292)
T PRK13595        255 PTPETAHRLYPLSIVTPWIVGTVAGVLLV--AALVRGGY  291 (292)
T ss_pred             CCHHHHhccchHHHHHhHHHHHHHHHHHH--HHHHccCC
Confidence                   0112233446666655444444  66666654

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=85.51  E-value=18  Score=29.40  Aligned_cols=38  Identities=29%  Similarity=0.054  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHhccccccccccCCCCCCCccccCCC
Q psy1910          39 GLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGSI   77 (153)
Q Consensus        39 ~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~i   77 (153)
                      .++.++.+..-..+....|+|-|++... |.-|..-|+=
T Consensus       172 ~~~~~~W~~~~d~~ya~~D~e~D~~~Gi-~sl~v~~G~~  209 (289)
T PLN02809        172 YASGVCWTLVYDTIYAHQDKEDDLKVGV-KSTALRFGDD  209 (289)
T ss_pred             HHHHHHHHHHHHHHHHHhchhhHHhCCC-cccchhhcHH
Confidence            3333444444457777789999998654 3667766653

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=84.98  E-value=19  Score=29.14  Aligned_cols=45  Identities=18%  Similarity=0.066  Sum_probs=27.1

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910          30 PDLHTLALFGLGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS   76 (153)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~   76 (153)
                      .++...++ .+..++.+..-...|.+.|+|-|++... |.=|+.-|+
T Consensus       165 ~~~~~~~l-~~~~~lw~~~~~~~~~~~d~~D~~~~G~-~tlpv~~G~  209 (296)
T PRK04375        165 LSWEALIL-FLIIFLWTPPHFWALAIFRKDDYAAAGI-PMLPVVKGI  209 (296)
T ss_pred             CCHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHcCC-CccceeeCH
Confidence            45543333 3344556666667778899999976433 355665554

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=83.85  E-value=22  Score=29.03  Aligned_cols=36  Identities=22%  Similarity=0.208  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHhccccccccccCCCCCCCccccCC
Q psy1910          40 LGAVIMRGAGCTINDLWDKDIDSKVSRTKDRPLVNGS   76 (153)
Q Consensus        40 ~~~~~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG~   76 (153)
                      ++.++-+..=..+-.+.|+|-|++..- +.-|..-|+
T Consensus       177 ~~~~~W~~~~d~iyA~qD~edD~~~Gv-~slpv~~G~  212 (294)
T PRK12873        177 LATLLWTFGFDTVYAMADRRDDAKIGL-NSSALSLGS  212 (294)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhHHHcCC-cccchhcCh
Confidence            455556666667788889999998543 467777775

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=83.05  E-value=22  Score=28.38  Aligned_cols=23  Identities=26%  Similarity=0.125  Sum_probs=14.3

Q ss_pred             hccccccccccCCCCCCCccccCC
Q psy1910          53 NDLWDKDIDSKVSRTKDRPLVNGS   76 (153)
Q Consensus        53 Nd~~D~~~D~~~~r~~~RPl~sG~   76 (153)
                      +.+.|+|.|++..++ .=|..-|+
T Consensus       178 ~a~~~~~dd~~~G~~-tl~v~~G~  200 (280)
T TIGR01473       178 LALKYKDDYRAAGIP-MLPVVKGE  200 (280)
T ss_pred             HHHHhhhhHHHCCCc-cCCcccCH
Confidence            346788888775443 55665554

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=81.63  E-value=25  Score=28.21  Aligned_cols=31  Identities=13%  Similarity=-0.040  Sum_probs=18.9

Q ss_pred             HHHHHHHHHhccccccccccCCCCCCCccccC
Q psy1910          44 IMRGAGCTINDLWDKDIDSKVSRTKDRPLVNG   75 (153)
Q Consensus        44 ~~~~~~~~~Nd~~D~~~D~~~~r~~~RPl~sG   75 (153)
                      +.+.+-..-|++.|+|-|++...+ .-|..-|
T Consensus       170 ~w~~~~~~~l~~~d~edd~~~G~~-tlpv~~G  200 (279)
T PRK12869        170 LWTPGHIWSLALKYREDYRRAGVP-MLPAVVG  200 (279)
T ss_pred             HHHHHHHHHHHHHhHHhHHHcCCe-ecceeec
Confidence            344444455788899999774432 4555554

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00