Psyllid ID: psy2757

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-
Protein Sequence
CVGVRRHTPYFGQPDYRVYELNKRLQQRTESLWSSSPETKVDESMYDCMLLCDELPDYHEA
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHccccEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
cvgvrrhtpyfgqpdyRVYELNKRLQQRTEslwssspetkvdesmydcmllcdelpdyhea
Flexible Loop (DISEMBL)
cvgvrrhtpyfgqpdyrVYELNKRLQQrteslwssspetkvdesmYDCMLLCDELPDYHEA
Low Complexity Region (SEG)
CVGVRRHTPYFGQPDYRVYELNKRLQQRTESLWSSSPETKVDESMYDCMLLCDELPDYHEA
Disordered region (IsUnstruct)
*********YFGQPDYRVYELN**********************MYDCMLLCDE*******
Disordered Region (DISOPRED)
*******TPYFGQPDYRVYELNKRLQQRTESLWSSSPETKVDESMYDCMLLCDELPD****
Disordered Region (DISEMBL)
CVGVRRHTPYFGQPDYRVYELNKRLQ***************DESMYDCMLLCDELPDYHEA
Disordered Region (DISPRO)
CVGVRRHTPYFGQPDYRVYELNKRLQQRTESLWSSSPETKVDESMYDCMLLCDELPDY***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
CVGVRRHTPYFGQPDYRVYELNKRLQQRTESLWSSSPETKVDESMYDCMLLCDELPDYHEA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	61	2.2.26 [Sep-21-2011]
O55203	373	LIM domain-binding protei	yes	N/A	0.475	0.077	0.687	6e-06
O43679	373	LIM domain-binding protei	yes	N/A	0.475	0.077	0.687	7e-06
Q9W676	371	LIM domain-binding protei	yes	N/A	0.475	0.078	0.656	2e-05
Q1EQW7	398	LIM domain-binding protei	N/A	N/A	0.475	0.072	0.656	3e-05
Q6NVL6	373	LIM domain-binding protei	no	N/A	0.754	0.123	0.509	6e-05
P70060	375	LIM domain-binding protei	N/A	N/A	0.754	0.122	0.509	7e-05
P70662	411	LIM domain-binding protei	no	N/A	0.508	0.075	0.617	8e-05
Q86U70	411	LIM domain-binding protei	no	N/A	0.508	0.075	0.617	8e-05
O42252	411	LIM domain-binding protei	no	N/A	0.508	0.075	0.617	8e-05
O73715	374	LIM domain-binding protei	no	N/A	0.754	0.122	0.5	8e-05

>sp|O55203|LDB2_MOUSE LIM domain-binding protein 2 OS=Mus musculus GN=Ldb2 PE=1 SV=2

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 26/32 (81%), Gaps = 3/32 (9%)

Query: 5  RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
          RRHTPY  QP+YR+YE+NKRLQ RTE   +LW
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.
Mus musculus (taxid: 10090)

>sp|O43679|LDB2_HUMAN LIM domain-binding protein 2 OS=Homo sapiens GN=LDB2 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 26/32 (81%), Gaps = 3/32 (9%)

Query: 5  RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
          RRHTPY  QP+YR+YE+NKRLQ RTE   +LW
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q9W676|LDB2_CHICK LIM domain-binding protein 2 OS=Gallus gallus GN=LDB2 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 26/32 (81%), Gaps = 3/32 (9%)

Query: 5  RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
          RRHTPY  QP+YR+YE+NKRLQ R+E   +LW
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQARSEDSDNLW 50

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.

Gallus gallus (taxid: 9031)

>sp|Q1EQW7|LDB2_XENLA LIM domain-binding protein 2 OS=Xenopus laevis GN=ldb2 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 25/32 (78%), Gaps = 3/32 (9%)

Query: 5  RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
          RRH PY  QP+YR+YE+NKRLQ RTE   +LW
Sbjct: 19 RRHAPYMVQPEYRIYEMNKRLQTRTEDSDNLW 50

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.

Xenopus laevis (taxid: 8355)

>sp|Q6NVL6|LDB1_XENTR LIM domain-binding protein 1 OS=Xenopus tropicalis GN=ldb1 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 5/51 (9%)

Query: 3  GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
          G+ RHTPY  Q DYR++ELNKRLQ  TE   +LW  +  T+  E   D ML
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFED--DAML 68

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors. Acts as a coactivator together with otx2 to stimulate lhx1/lim1-mediated activation of the gsc promoter in the Spemann organizer. Acts synergistically with lhx1/lim1 and ssbp in axis formation.

Xenopus tropicalis (taxid: 8364)

>sp|P70060|LDB1_XENLA LIM domain-binding protein 1 OS=Xenopus laevis GN=ldb1 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 5/51 (9%)

Query: 3  GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
          G+ RHTPY  Q DYR++ELNKRLQ  TE   +LW  +  T+  E   D ML
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFED--DAML 68

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors. Acts as a coactivator together with otx2 to stimulate lhx1/lim1-mediated activation of the gsc promoter in the Spemann organizer. Acts synergistically with lhx1/lim1 and ssbp in axis formation.

Xenopus laevis (taxid: 8355)

>sp|P70662|LDB1_MOUSE LIM domain-binding protein 1 OS=Mus musculus GN=Ldb1 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 25/34 (73%), Gaps = 3/34 (8%)

Query: 3  GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
          G+ RHTPY  Q DYR++ELNKRLQ  TE   +LW
Sbjct: 56 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLW 89

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors. May regulate the transcriptional activity of LIM-containing proteins by determining specific partner interactions. May play a role in the development of motor neurons. Acts synergistically with LHX1/LIM1 in axis formation and activation of gene expression. Acts with LMO2 in the regulation of red blood cell development, maintaining erythroid precursors in an immature state.

Mus musculus (taxid: 10090)

>sp|Q86U70|LDB1_HUMAN LIM domain-binding protein 1 OS=Homo sapiens GN=LDB1 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 25/34 (73%), Gaps = 3/34 (8%)

Query: 3  GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
          G+ RHTPY  Q DYR++ELNKRLQ  TE   +LW
Sbjct: 56 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLW 89

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors. May regulate the transcriptional activity of LIM-containing proteins by determining specific partner interactions. May play a role in the development of motor neurons. Acts synergistically with LHX1/LIM1 in axis formation and activation of gene expression. Acts with LMO2 in the regulation of red blood cell development, maintaining erythroid precursors in an immature state.

Homo sapiens (taxid: 9606)

>sp|O42252|LDB1_CHICK LIM domain-binding protein 1 OS=Gallus gallus GN=LDB1 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 25/34 (73%), Gaps = 3/34 (8%)

Query: 3  GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
          G+ RHTPY  Q DYR++ELNKRLQ  TE   +LW
Sbjct: 56 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLW 89

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.

Gallus gallus (taxid: 9031)

>sp|O73715|LDB1A_DANRE LIM domain-binding protein 1-A OS=Danio rerio GN=ldb1a PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 6/52 (11%)

Query: 3  GVRRHTPYFGQPDYRVYELNKRLQQRTE----SLWSSSPETKVDESMYDCML 50
          G+ RHTPY  Q DYR++ELNKRLQ  TE    +LW  +  T+  E   D ML
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEQDCDNLWWDAFTTEFFED--DAML 69


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,346,937
Number of Sequences: 539616
Number of extensions: 780476
Number of successful extensions: 1597
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1587
Number of HSP's gapped (non-prelim): 10
length of query: 61
length of database: 191,569,459
effective HSP length: 34
effective length of query: 27
effective length of database: 173,222,515
effective search space: 4677007905
effective search space used: 4677007905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
91077994	575	PREDICTED: similar to lim domain binding	0.475	0.050	0.843	7e-08
270001422	708	hypothetical protein TcasGA2_TC000244 [T	0.475	0.040	0.843	9e-08
328776943	822	PREDICTED: hypothetical protein LOC41123	0.475	0.035	0.843	1e-07
340717783	617	PREDICTED: LIM domain-binding protein 2-	0.475	0.047	0.843	2e-07
242014824	382	LIM domain-binding protein, putative [Pe	0.475	0.075	0.843	2e-07
383856253	697	PREDICTED: uncharacterized protein LOC10	0.475	0.041	0.843	2e-07
380028812	601	PREDICTED: LOW QUALITY PROTEIN: LIM doma	0.475	0.048	0.843	3e-07
427792649	449	Putative lim domain binding protein ldb1	0.475	0.064	0.812	3e-07
241709461	405	Lim domain-binding protein, putative [Ix	0.475	0.071	0.812	3e-07
357614323	367	hypothetical protein KGM_07291 [Danaus p	0.491	0.081	0.818	7e-07

>gi|91077994|ref|XP_969024.1| PREDICTED: similar to lim domain binding protein [Tribolium castaneum]

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/32 (84%), Positives = 29/32 (90%), Gaps = 3/32 (9%)

Query: 5   RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
           RRHTPYFGQPDYR+YELNKRLQQRTE   +LW
Sbjct: 212 RRHTPYFGQPDYRIYELNKRLQQRTEESDNLW 243

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001422|gb|EEZ97869.1| hypothetical protein TcasGA2_TC000244 [Tribolium castaneum]

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 29/32 (90%), Gaps = 3/32 (9%)

Query: 5   RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
           RRHTPYFGQPDYR+YELNKRLQQRTE   +LW
Sbjct: 348 RRHTPYFGQPDYRIYELNKRLQQRTEESDNLW 379

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776943|ref|XP_394712.4| PREDICTED: hypothetical protein LOC411238 [Apis mellifera]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 29/32 (90%), Gaps = 3/32 (9%)

Query: 5   RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
           RRHTPYFGQPDYR+YELNKRLQQRTE   +LW
Sbjct: 293 RRHTPYFGQPDYRLYELNKRLQQRTEESDNLW 324

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717783|ref|XP_003397355.1| PREDICTED: LIM domain-binding protein 2-like [Bombus terrestris]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 29/32 (90%), Gaps = 3/32 (9%)

Query: 5   RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
           RRHTPYFGQPDYR+YELNKRLQQRTE   +LW
Sbjct: 232 RRHTPYFGQPDYRLYELNKRLQQRTEESDNLW 263

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014824|ref|XP_002428085.1| LIM domain-binding protein, putative [Pediculus humanus corporis] gi|212512604|gb|EEB15347.1| LIM domain-binding protein, putative [Pediculus humanus corporis]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 29/32 (90%), Gaps = 3/32 (9%)

Query: 5  RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
          RRHTPYFGQPDYR+YELNKRLQQRTE   +LW
Sbjct: 25 RRHTPYFGQPDYRIYELNKRLQQRTEESDNLW 56

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856253|ref|XP_003703624.1| PREDICTED: uncharacterized protein LOC100880826 [Megachile rotundata]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 29/32 (90%), Gaps = 3/32 (9%)

Query: 5   RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
           RRHTPYFGQPDYR+YELNKRLQQRTE   +LW
Sbjct: 169 RRHTPYFGQPDYRLYELNKRLQQRTEESDNLW 200

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028812|ref|XP_003698080.1| PREDICTED: LOW QUALITY PROTEIN: LIM domain-binding protein 2-like, partial [Apis florea]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 29/32 (90%), Gaps = 3/32 (9%)

Query: 5   RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
           RRHTPYFGQPDYR+YELNKRLQQRTE   +LW
Sbjct: 75  RRHTPYFGQPDYRLYELNKRLQQRTEESDNLW 106

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427792649|gb|JAA61776.1| Putative lim domain binding protein ldb1/nli/clim, partial [Rhipicephalus pulchellus]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/32 (81%), Positives = 29/32 (90%), Gaps = 3/32 (9%)

Query: 5  RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
          RRHTPYFGQPDYR+YE+NKRLQQRTE   +LW
Sbjct: 41 RRHTPYFGQPDYRIYEMNKRLQQRTEESDNLW 72

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241709461|ref|XP_002403406.1| Lim domain-binding protein, putative [Ixodes scapularis] gi|215505066|gb|EEC14560.1| Lim domain-binding protein, putative [Ixodes scapularis]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/32 (81%), Positives = 29/32 (90%), Gaps = 3/32 (9%)

Query: 5  RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
          RRHTPYFGQPDYR+YE+NKRLQQRTE   +LW
Sbjct: 50 RRHTPYFGQPDYRIYEMNKRLQQRTEESDNLW 81

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357614323|gb|EHJ69020.1| hypothetical protein KGM_07291 [Danaus plexippus]

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/33 (81%), Positives = 28/33 (84%), Gaps = 3/33 (9%)

Query: 4  VRRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
           RRH PYFGQPDYRVYELNKRLQQRTE   +LW
Sbjct: 49 FRRHAPYFGQPDYRVYELNKRLQQRTEDSDNLW 81

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
UNIPROTKB|G5E9Y7	371	LDB2 "LIM domain-binding prote	0.475	0.078	0.687	6.1e-08
UNIPROTKB|O43679	373	LDB2 "LIM domain-binding prote	0.475	0.077	0.687	6.3e-08
MGI|MGI:894670	373	Ldb2 "LIM domain binding 2" [M	0.475	0.077	0.687	6.3e-08
UNIPROTKB|F1PRG9	372	LDB2 "Uncharacterized protein"	0.475	0.077	0.687	7.9e-08
UNIPROTKB|F6R129	370	LDB2 "Uncharacterized protein"	0.475	0.078	0.687	9.8e-08
UNIPROTKB|E7EX95	110	LDB2 "LIM domain-binding prote	0.475	0.263	0.687	1.4e-07
UNIPROTKB|E9PGU0	106	LDB2 "LIM domain-binding prote	0.475	0.273	0.687	1.4e-07
UNIPROTKB|F1NGI1	371	LDB2 "LIM domain-binding prote	0.475	0.078	0.656	2.1e-07
UNIPROTKB|Q9W676	371	LDB2 "LIM domain-binding prote	0.475	0.078	0.656	2.1e-07
UNIPROTKB|Q1EQW7	398	ldb2 "LIM domain-binding prote	0.475	0.072	0.656	3.4e-07

UNIPROTKB|G5E9Y7 LDB2 "LIM domain-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
 Identities = 22/32 (68%), Positives = 26/32 (81%)

Query:     5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
             RRHTPY  QP+YR+YE+NKRLQ RTE   +LW
Sbjct:    19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030274 "LIM domain binding" evidence=IEA

UNIPROTKB|O43679 LDB2 "LIM domain-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
 Identities = 22/32 (68%), Positives = 26/32 (81%)

Query:     5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
             RRHTPY  QP+YR+YE+NKRLQ RTE   +LW
Sbjct:    19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0010669 "epithelial structure maintenance" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0044089 "positive regulation of cellular component biogenesis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030274 "LIM domain binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

MGI|MGI:894670 Ldb2 "LIM domain binding 2" [Mus musculus (taxid:10090)]

 Score = 120 (47.3 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
 Identities = 22/32 (68%), Positives = 26/32 (81%)

Query:     5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
             RRHTPY  QP+YR+YE+NKRLQ RTE   +LW
Sbjct:    19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50

GO:0000989 "transcription factor binding transcription factor activity" evidence=IPI

GO:0001942 "hair follicle development" evidence=IGI

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IDA

GO:0010669 "epithelial structure maintenance" evidence=IGI

GO:0019899 "enzyme binding" evidence=IPI

GO:0030274 "LIM domain binding" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IGI

GO:0044089 "positive regulation of cellular component biogenesis" evidence=IGI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI

UNIPROTKB|F1PRG9 LDB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 120 (47.3 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
 Identities = 22/32 (68%), Positives = 26/32 (81%)

Query:     5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
             RRHTPY  QP+YR+YE+NKRLQ RTE   +LW
Sbjct:    19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50

GO:0030274 "LIM domain binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003712 "transcription cofactor activity" evidence=IEA

UNIPROTKB|F6R129 LDB2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 120 (47.3 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
 Identities = 22/32 (68%), Positives = 26/32 (81%)

Query:     5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
             RRHTPY  QP+YR+YE+NKRLQ RTE   +LW
Sbjct:    19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0044089 "positive regulation of cellular component biogenesis" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0010669 "epithelial structure maintenance" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0030274 "LIM domain binding" evidence=IEA

GO:0003712 "transcription cofactor activity" evidence=IEA

UNIPROTKB|E7EX95 LDB2 "LIM domain-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 22/32 (68%), Positives = 26/32 (81%)

Query:     5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
             RRHTPY  QP+YR+YE+NKRLQ RTE   +LW
Sbjct:    19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030274 "LIM domain binding" evidence=IEA

UNIPROTKB|E9PGU0 LDB2 "LIM domain-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 22/32 (68%), Positives = 26/32 (81%)

Query:     5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
             RRHTPY  QP+YR+YE+NKRLQ RTE   +LW
Sbjct:    19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030274 "LIM domain binding" evidence=IEA

UNIPROTKB|F1NGI1 LDB2 "LIM domain-binding protein 2" [Gallus gallus (taxid:9031)]

 Score = 115 (45.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 21/32 (65%), Positives = 26/32 (81%)

Query:     5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
             RRHTPY  QP+YR+YE+NKRLQ R+E   +LW
Sbjct:    19 RRHTPYMVQPEYRIYEMNKRLQARSEDSDNLW 50

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0030274 "LIM domain binding" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0010669 "epithelial structure maintenance" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0044089 "positive regulation of cellular component biogenesis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q9W676 LDB2 "LIM domain-binding protein 2" [Gallus gallus (taxid:9031)]

 Score = 115 (45.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 21/32 (65%), Positives = 26/32 (81%)

Query:     5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
             RRHTPY  QP+YR+YE+NKRLQ R+E   +LW
Sbjct:    19 RRHTPYMVQPEYRIYEMNKRLQARSEDSDNLW 50

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0030274 "LIM domain binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q1EQW7 ldb2 "LIM domain-binding protein 2" [Xenopus laevis (taxid:8355)]

 Score = 114 (45.2 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query:     5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
             RRH PY  QP+YR+YE+NKRLQ RTE   +LW
Sbjct:    19 RRHAPYMVQPEYRIYEMNKRLQTRTEDSDNLW 50

GO:0005634 "nucleus" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0030274 "LIM domain binding" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9W676	LDB2_CHICK	No assigned EC number	0.6562	0.4754	0.0781	yes	N/A
O55203	LDB2_MOUSE	No assigned EC number	0.6875	0.4754	0.0777	yes	N/A
O43679	LDB2_HUMAN	No assigned EC number	0.6875	0.4754	0.0777	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	61
KOG2181|consensus	415		99.93
PF01803	240	LIM_bind: LIM-domain binding protein; InterPro: IP	98.33

>KOG2181|consensus

Probab=99.93  E-value=2.6e-27  Score=181.86  Aligned_cols=55  Identities=31%  Similarity=0.452  Sum_probs=52.4

Q ss_pred             CcccCCCCCCCCCchhHhHHHHHHHhcccC---ccccCcccccccccCc-eeeeeccCC
Q psy2757           2 VGVRRHTPYFGQPDYRVYELNKRLQQRTES---LWSSSPETKVDESMYD-CMLLCDELP   56 (61)
Q Consensus         2 ~~~~rh~py~~qpeyRI~elNkRLq~rte~---lWwDaF~teFFEdda~-~~l~c~Edp   56 (61)
                      +|++||+||++|+||||||||||||+|+|.   +|||||+||||||||+ +++||+||-
T Consensus        38 pg~~rh~~y~s~~e~Ri~emNkRLq~~se~sdN~WWDaFstEFFeDDa~Lt~~fclEdg   96 (415)
T KOG2181|consen   38 PGFQRHGNYVSPLEFRIHEMNKRLQIFSEVSDNQWWDAFSTEFFEDDAKLTFVFCLEDG   96 (415)
T ss_pred             CcccccCCCcCcchhhHHHHHHHHHHhcccchhhhHHhhhhhhhcCCceEEEEEEecCC
Confidence            589999999999999999999999999884   9999999999999999 999999984

>PF01803 LIM_bind: LIM-domain binding protein; InterPro: IPR002691 The LIM-domain binding protein, binds to the LIM domain IPR001781 from INTERPRO of LIM homeodomain proteins which are transcriptional regulators of development

Probab=98.33  E-value=1.9e-07  Score=64.20  Aligned_cols=42  Identities=14%  Similarity=0.034  Sum_probs=35.7

Q ss_pred             hhHhHHHHHHHhcccC----ccccCcccccccccCc-eeeeeccCCC
Q psy2757          16 YRVYELNKRLQQRTES----LWSSSPETKVDESMYD-CMLLCDELPD   57 (61)
Q Consensus        16 yRI~elNkRLq~rte~----lWwDaF~teFFEdda~-~~l~c~Edp~   57 (61)
                      +||+++|++|+++.++    .||+.|+.+||.++|. ...++.++-.
T Consensus         2 lRl~~~~~~l~~~~~~~~~~~yW~~fv~~fF~~~a~lr~~~~~~~~~   48 (240)
T PF01803_consen    2 LRLLEFIERLSNFSPNLNDIEYWQKFVHEFFSPDAVLRISLWNEDGN   48 (240)
T ss_pred             chHHHHHHHHHhhcCCCCcHHHHHHHHHHHcCCCeeEEEEEEcCCCC
Confidence            6999999999999332    9999999999999999 7777776653

Nuclear LIM interactor (NLI) / LIM domain-binding protein 1 (LDB1) P70662 from SWISSPROT is located in the nuclei of neuronal cells during development, it is co-expressed with Isl1 in early motor neuron differentiation and has a suggested role in the Isl1 dependent development of motor neurons []. It is suggested that these proteins act synergistically to enhance transcriptional efficiency by acting as co-factors for LIM homeodomain and Otx class transcription factors both of which have essential roles in development []. The Drosophila melanogaster protein Chip O18353 from SWISSPROT is required for segmentation and activity of a remote wing margin enhancer []. Chip is a ubiquitous chromosomal factor required for normal expression of diverse genes at many stages of development []. It is suggested that Chip cooperates with different LIM domain proteins and other factors to structurally support remote enhancer-promoter interactions [].; GO: 0003712 transcription cofactor activity, 0005634 nucleus

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00