Psyllid ID: psy3289

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MVTKLLQIIDVPGPIIDRGGALVSGSGYGSTGASYGKKNFRKFNWINRGTQQHREEQKLNPDPRFTPTYGVRKVLQTSDGRPVVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNPLQPSDNELLTPEEAEKRARKTGSDLFDQEVDVGDRTQITKDYYL
Secondary Structure (PSIPRED)
cccccEEEEccccccccccccEEEccccccccccccccccccccccccccHHHHHHHHccccccccccccccccEEccccEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHEEEEcccccEEccccEEEEcccccccHHHccccccEEEEccccccHHHHHHHHccccccccccccccccEEEccccEccccccEEEcccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHccccHHHHHHHHHHcccccccccEEEccccEEcccccc
Coil and Loop (DISEMBL)
MVTKLLQIidvpgpiidrggalvsgsgygstgasygkknfrkfnwinrgtqqhreeqklnpdprftptygvrkvlqtsdgrpvvetipelivpnlegfnlkpyvsyrtneiqtpeftakDLFIEVYAEKINKDfeankldedgnplqpsdnelltpeEAEKRARKtgsdlfdqevdvgdrtqitkdyyl
Flexible Loop (DISEMBL)
MVTKLLQIIDVPGPIIDRGGALVSGSGYGSTGASYGKKNFRKFNWINRGtqqhreeqklnpdprftptYGVRKvlqtsdgrpvvetipelivpnlegfNLKPYVSYRTneiqtpeftakDLFIEVYAEKINKDFeankldedgnplqpsdnelltpEEAEKRarktgsdlfdqevdvgdrtqitkdyyl
Low Complexity Region (SEG)
MVTKLLQIIDVPGPIIDRGGALVsgsgygstgasygKKNFRKFNWINRGTQQHREEQKLNPDPRFTPTYGVRKVLQTSDGRPVVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNPLQPSDNELLTPEEAEKRARKTGSDLFDQEVDVGDRTQITKDYYL
Disordered region (IsUnstruct)
****************************************RKFNWI*********************TYGVRKVLQTSDGRPVVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINK*********************************************************
Disordered Region (DISOPRED)
**TKLLQIIDVPGPIIDRGGALVSGSGYGS*G**YG**NFRKFNWINR*****************TPTYGVRKVLQTSDGRPVVETIPELIVPNLEGFNLKPYVSYRTNE***PEFTAKDLFIEVYAEKINKDFE********************************SDLFDQEVDVGDRTQIT*DYYL
Disordered Region (DISEMBL)
MVTKLLQIIDVPGPIIDRGGALVSGSGYGSTGASYGKKNFRKFNWINRGTQQHREEQKLNPDPRFTPTYGVRKVLQTSDGRPVVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNPLQPSDNELLTPEEAEKRARKTGSDLFDQEVDVGDRTQITKDYYL
Disordered Region (DISPRO)
*VTKLLQIIDVPGPIIDRGGALVSGSGYGSTGASYGKKNFRKFNWINRGTQQHREEQKLNPDPRFTPTYGVRKVLQTSDGRPVVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNPLQPSDNELLTPEEAEKRARKTGSDLFDQEVDVGDRTQITKDYYL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTKLLQIIDVPGPIIDRGGALVSGSGYGSTGASYGKKNFRKFNWINRGTQQHREEQKLNPDPRFTPTYGVRKVLQTSDGRPVVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNPLQPSDNELLTPEEAEKRARKTGSDLFDQEVDVGDRTQITKDYYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
Q7JZM8	166	39S ribosomal protein L41	yes	N/A	0.714	0.813	0.524	2e-28
Q291A0	166	39S ribosomal protein L41	yes	N/A	0.719	0.819	0.478	2e-24
Q9CQN7	135	39S ribosomal protein L41	yes	N/A	0.417	0.585	0.458	3e-08
Q8IXM3	137	39S ribosomal protein L41	yes	N/A	0.317	0.437	0.466	4e-08
Q5BJX1	134	39S ribosomal protein L41	yes	N/A	0.354	0.5	0.453	5e-08
Q502B0	135	39S ribosomal protein L41	yes	N/A	0.322	0.451	0.491	5e-08
Q6INF3	135	39S ribosomal protein L41	N/A	N/A	0.470	0.659	0.372	4e-06
Q6DJI4	135	39S ribosomal protein L41	N/A	N/A	0.280	0.392	0.452	1e-05
P90993	180	39S ribosomal protein L41	yes	N/A	0.370	0.388	0.392	8e-05

>sp|Q7JZM8|RM41_DROME 39S ribosomal protein L41, mitochondrial OS=Drosophila melanogaster GN=mRpL41 PE=2 SV=1

 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 95/141 (67%), Gaps = 6/141 (4%)

Query: 36  GKKNFRKFNWIN-RGTQQHREEQK--LNPDPRFTPTYGVRKVLQTSDGR--PVVETIPEL 90
           GK+NFRKFN  N RGT+  +E QK   NP P      GVR      DG+   + E IP++
Sbjct: 27  GKRNFRKFNAYNKRGTRVVKEAQKTLANP-PVAIHKRGVRDTGILVDGQYVEIPEKIPDI 85

Query: 91  IVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNPLQPSD 150
           IVP+L G  LKPYVSY+  ++   EFT+ DLF  VY++KI +DF+A KL +DG+  +PS 
Sbjct: 86  IVPDLTGCKLKPYVSYKAPDVVQSEFTSLDLFNAVYSQKIIEDFKAGKLQKDGSAKEPSV 145

Query: 151 NELLTPEEAEKRARKTGSDLF 171
           NE LTPEEA +RARKTGSD+F
Sbjct: 146 NEQLTPEEALQRARKTGSDIF 166

Drosophila melanogaster (taxid: 7227)

>sp|Q291A0|RM41_DROPS 39S ribosomal protein L41, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=mRpL41 PE=3 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 87/140 (62%), Gaps = 4/140 (2%)

Query: 36  GKKNFRKFN-WINRGTQQHREEQKLNPDPRF-TPTYGVRKVLQTSDGR--PVVETIPELI 91
           GK+NFRKFN    RGT+  +E QK   +P       GVR      DG+   + E IP++I
Sbjct: 27  GKRNFRKFNVHSKRGTRVVKEAQKTMANPPVPIDKRGVRDTGILVDGKFVEIPEKIPDII 86

Query: 92  VPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNPLQPSDN 151
           VP+L    LKPYVSY+  E+   EFT+ DLF  VY++KI +DF+A  L  DG+P +PS  
Sbjct: 87  VPDLTDCKLKPYVSYKAPEVVQSEFTSLDLFNAVYSKKIVEDFKAGSLQADGSPKEPSAE 146

Query: 152 ELLTPEEAEKRARKTGSDLF 171
           E LT  EA  RAR+TGSD+F
Sbjct: 147 EKLTSSEAFLRARRTGSDIF 166

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9CQN7|RM41_MOUSE 39S ribosomal protein L41, mitochondrial OS=Mus musculus GN=Mrpl41 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 50/85 (58%), Gaps = 6/85 (7%)

Query: 63  PR-FTPTYGVRKV-LQTSDGR--PVVETIPELIVPNLEGFNLKPYVSYRTNE-IQTPEFT 117
           PR FT + G +K  + TSD +   + E +PE +VP+L GF LKPYV+YR    I TP  T
Sbjct: 27  PRTFTKSRGAKKTGIYTSDRKFVQIKEMVPEFVVPDLTGFKLKPYVNYRAPAGIDTP-LT 85

Query: 118 AKDLFIEVYAEKINKDFEANKLDED 142
           AK LF E  A  I KDF+    D +
Sbjct: 86  AKALFQETVAPAIEKDFKEGTFDAN 110

Component of the mitochondrial ribosome large subunit. Also involved in apoptosis and cell cycle. Enhances p53/TP53 stability, thereby contributing to p53/TP53-induced apoptosis in response to growth-inhibitory condition. Enhances p53/TP53 translocation to the mitochondria. Has the ability to arrest the cell cycle at the G1 phase, possibly by stabilizing the CDKN1A and CDKN1B (p27Kip1) proteins.

Mus musculus (taxid: 10090)

>sp|Q8IXM3|RM41_HUMAN 39S ribosomal protein L41, mitochondrial OS=Homo sapiens GN=MRPL41 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 34/60 (56%)

Query: 83  VVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDED 142
           + E +PE +VP+L GF LKPYVSY   E +    TA  LF E  A  I KDF+    D D
Sbjct: 53  IKEMVPEFVVPDLTGFKLKPYVSYLAPESEETPLTAAQLFSEAVAPAIEKDFKDGTFDPD 112

Component of the mitochondrial ribosome large subunit. Also involved in apoptosis and cell cycle. Enhances p53/TP53 stability, thereby contributing to p53/TP53-induced apoptosis in response to growth-inhibitory condition. Enhances p53/TP53 translocation to the mitochondria. Has the ability to arrest the cell cycle at the G1 phase, possibly by stabilizing the CDKN1A and CDKN1B (p27Kip1) proteins.

Homo sapiens (taxid: 9606)

>sp|Q5BJX1|RM41_RAT 39S ribosomal protein L41, mitochondrial OS=Rattus norvegicus GN=Mrpl41 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 8/75 (10%)

Query: 69  YGVRKVLQTSDGRPVVETIPELIVPNLEGFNLKPYVSYRTNE-IQTPEFTAKDLFIEVYA 127
           Y  RK +Q      + E +PE +VP+L GF LKPYV+YR    I TP  TAK LF+E  A
Sbjct: 42  YTNRKFVQ------IKEMVPEFVVPDLTGFKLKPYVNYRAPAGIDTP-LTAKALFLETVA 94

Query: 128 EKINKDFEANKLDED 142
             I KDF+    D +
Sbjct: 95  PAIEKDFKEGTFDAN 109

Component of the mitochondrial ribosome large subunit. Also involved in apoptosis and cell cycle. Enhances p53/TP53 stability, thereby contributing to p53/TP53-induced apoptosis in response to growth-inhibitory condition. Enhances p53/TP53 translocation to the mitochondria. Has the ability to arrest the cell cycle at the G1 phase, possibly by stabilizing the CDKN1A and CDKN1B (p27Kip1) proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q502B0|RM41_DANRE 39S ribosomal protein L41, mitochondrial OS=Danio rerio GN=mrpl41 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 35/61 (57%)

Query: 82  PVVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDE 141
           P+   IPE  VPNLEGFNLK YVSY+T        T + LF EV A +I +D E     E
Sbjct: 50  PIRAMIPEFAVPNLEGFNLKAYVSYKTPAGTEEPMTPEKLFNEVVAPQIQRDIEEGVFSE 109

Query: 142 D 142
           D
Sbjct: 110 D 110

Component of the mitochondrial ribosome large subunit. Also involved in apoptosis and cell cycle.

Danio rerio (taxid: 7955)

>sp|Q6INF3|RM41B_XENLA 39S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis GN=mrpl41-b PE=2 SV=1

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query: 46  INRGTQQHRE-EQKLNPDPRFTPTYGVRKV-LQTSDGR--PVVETIPELIVPNLEGFNLK 101
           + RG  +  E   KL P+  +    G +K+   TS G+   V E +P  +VP+L GF LK
Sbjct: 11  LVRGADRMAECTSKLGPN-SYNKGRGAKKIGYLTSSGKFVKVREMVPVFVVPDLTGFKLK 69

Query: 102 PYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFE 135
           PYVSY+         TAK LF+E    +I KD +
Sbjct: 70  PYVSYKAPPGTEDPMTAKKLFMETVGPQIEKDLQ 103

Component of the mitochondrial ribosome large subunit. Also involved in apoptosis and cell cycle.

Xenopus laevis (taxid: 8355)

>sp|Q6DJI4|RM41A_XENLA 39S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis GN=mrpl41-a PE=2 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 31/53 (58%)

Query: 83  VVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFE 135
           V E +P  +VP+L GF LKPYVSY+         TAK LF+E    +I KD +
Sbjct: 51  VREMVPVFVVPDLTGFKLKPYVSYKAPPGTEDPMTAKKLFMETVGPQIEKDLQ 103

Component of the mitochondrial ribosome large subunit. Also involved in apoptosis and cell cycle.

Xenopus laevis (taxid: 8355)

>sp|P90993|RM41_CAEEL 39S ribosomal protein L41, mitochondrial OS=Caenorhabditis elegans GN=mrpl-41 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 14/84 (16%)

Query: 36  GKKNFRKFNWINRGTQQHREEQKLNPD-PRFTPTYGVRKVLQTSDG---------RPVVE 85
           G  N+ KF W      Q+RE  +L+P   +  P    R     +DG          PV E
Sbjct: 37  GPMNYEKFKWPG----QNREFPELSPKFQKLNPKELHRYTGVQADGFHDEKTGEFVPVKE 92

Query: 86  TIPELIVPNLEGFNLKPYVSYRTN 109
              EL+VPNL+GF L+PYVSYRT+
Sbjct: 93  MRSELVVPNLDGFKLRPYVSYRTD 116

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
322789344	165	hypothetical protein SINV_08316 [Solenop	0.777	0.890	0.523	8e-32
156538389	175	PREDICTED: 39S ribosomal protein L41, mi	0.788	0.851	0.509	5e-31
307171303	165	39S ribosomal protein L41, mitochondrial	0.814	0.933	0.455	7e-30
332019225	165	39S ribosomal protein L41, mitochondrial	0.772	0.884	0.486	9e-30
62083365	176	putative mitochondrial ribosomal protein	0.814	0.875	0.455	4e-29
391344802	157	PREDICTED: 39S ribosomal protein L41, mi	0.751	0.904	0.472	2e-28
242012485	166	mitochondrial 50S ribosomal protein L41,	0.719	0.819	0.528	3e-28
157129933	158	mitochondrial ribosomal protein, L41, pu	0.767	0.917	0.496	7e-28
389610033	162	mitochondrial ribosomal protein L41 [Pap	0.767	0.895	0.481	1e-27
91081117	159	PREDICTED: similar to mitochondrial ribo	0.777	0.924	0.496	1e-27

>gi|322789344|gb|EFZ14656.1| hypothetical protein SINV_08316 [Solenopsis invicta]

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 79/151 (52%), Positives = 101/151 (66%), Gaps = 4/151 (2%)

Query: 27  GYGSTGASYGKKNFRKFNWIN-RGTQQHREEQKLNPDPRF-TPTYGVRKVLQTSDGRPVV 84
           G  ++    GK+NFRKF   N RG++  +E+Q  NPDP       GVR +      R +V
Sbjct: 11  GIATSCVCNGKRNFRKFIIYNKRGSRSFKEQQAKNPDPEIPIDKRGVRDIGYKVGDRFIV 70

Query: 85  --ETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDED 142
             E IPELIVP+LEGF LKPYVSY+   I  PEFTA+DLF  VY++KI +DFE  +LDE+
Sbjct: 71  VPEMIPELIVPSLEGFTLKPYVSYKAEGITEPEFTAQDLFDVVYSKKIKEDFEKGQLDEN 130

Query: 143 GNPLQPSDNELLTPEEAEKRARKTGSDLFDQ 173
           G PL PS+ E LTP++A+  A KTGSDLF+Q
Sbjct: 131 GEPLNPSEYEKLTPQQAKDEAGKTGSDLFNQ 161

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156538389|ref|XP_001605563.1| PREDICTED: 39S ribosomal protein L41, mitochondrial-like [Nasonia vitripennis]

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/155 (50%), Positives = 102/155 (65%), Gaps = 6/155 (3%)

Query: 22  LVSGSGYGSTGASYGKKNFRKFNWIN-RGTQQHREEQKLNPDPRF-TPTYGVRKVLQTSD 79
           L+   G  ++ A YGK+NFRKF  IN RGT+  ++ Q  +PDPR+     GVR V    D
Sbjct: 6   LIITRGISTSCARYGKRNFRKFTLINKRGTRIFKKMQAEDPDPRYPIDKRGVRDV-GYMD 64

Query: 80  GRPVVE---TIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEA 136
           G+  VE    IPELIVPNLEGF LKPYV+Y+  E++   FTA+DLF  VYA KI +D+  
Sbjct: 65  GKKFVEIPEMIPELIVPNLEGFKLKPYVTYKVTEVKNEVFTAEDLFYSVYANKIREDYNK 124

Query: 137 NKLDEDGNPLQPSDNELLTPEEAEKRARKTGSDLF 171
            KL  +G PL+PS  ELLTP+EA + A K G+D+F
Sbjct: 125 GKLGPNGEPLEPSPEELLTPKEARELASKPGNDIF 159

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171303|gb|EFN63228.1| 39S ribosomal protein L41, mitochondrial [Camponotus floridanus]

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 99/158 (62%), Gaps = 4/158 (2%)

Query: 19  GGALVSGSGYGSTGASYGKKNFRKFNWIN-RGTQQHREEQKLNPDPRF-TPTYGVRKVLQ 76
              ++   G  ++   +GK+NFRKF   N RG++  + +Q  NPD        GVR +  
Sbjct: 3   SSCMILRRGIATSCVCHGKRNFRKFLLYNKRGSRNFKMQQAKNPDSDIPIDKRGVRDIGY 62

Query: 77  TSDGRPVV--ETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDF 134
             D R V+  E IPELIVP+LEGF LKPYVSY+      P+FTA+DLF  VY++KI +DF
Sbjct: 63  KIDDRFVIVPEMIPELIVPSLEGFTLKPYVSYKVEMFTEPQFTAQDLFDAVYSKKIKEDF 122

Query: 135 EANKLDEDGNPLQPSDNELLTPEEAEKRARKTGSDLFD 172
             N+LDE G P+ P++ E LTP++A+  A KTG D+FD
Sbjct: 123 TNNQLDEKGEPVNPNEYEKLTPQQAKDNASKTGCDIFD 160

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019225|gb|EGI59735.1| 39S ribosomal protein L41, mitochondrial [Acromyrmex echinatior]

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 73/150 (48%), Positives = 101/150 (67%), Gaps = 4/150 (2%)

Query: 29  GSTGASYGKKNFRKFN-WINRGTQQHREEQKLNPDPRF-TPTYGVRKVLQTSDGR--PVV 84
            ++    GK+NFRKF  +  RG++  +++Q   PDP       GVR +      R   V 
Sbjct: 13  ATSCVCNGKRNFRKFLLYGKRGSRNFKQQQAKKPDPDIPIDKRGVRDIGYQVGNRFVQVP 72

Query: 85  ETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDEDGN 144
           E IPELIVP+LEGF LKPYVSYR  EI+ PEFTA+DLF  VY++K+ +DF + +LDE+G 
Sbjct: 73  EMIPELIVPSLEGFTLKPYVSYRVGEIREPEFTAQDLFDVVYSKKVKEDFASGQLDENGE 132

Query: 145 PLQPSDNELLTPEEAEKRARKTGSDLFDQE 174
           PL PS+ E LTP++A+++A KTG DLF ++
Sbjct: 133 PLNPSEYEKLTPQQAKEQAEKTGCDLFSEK 162

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|62083365|gb|AAX62407.1| putative mitochondrial ribosomal protein L41 [Lysiphlebus testaceipes]

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 100/158 (63%), Gaps = 4/158 (2%)

Query: 21  ALVSGSGYGSTGASYGKKNFRKFNWIN-RGTQQHREEQKLNPDPRF-TPTYGVRKV--LQ 76
           A+    G  ++    G+KNFRKF+  N RGT++ +E Q++ P P       G R    + 
Sbjct: 6   AMKFCRGISTSSVCCGRKNFRKFDLPNKRGTREFKERQRVQPHPDIPIDKRGTRDTGYMD 65

Query: 77  TSDGRPVVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEA 136
             + + + E IPELIVP+L+ F LKPYVSYR+  +   EFTAKDLF  +Y EKI+KDF A
Sbjct: 66  GKNYKMIPEMIPELIVPDLKDFTLKPYVSYRSLNVTQSEFTAKDLFNAIYTEKIHKDFAA 125

Query: 137 NKLDEDGNPLQPSDNELLTPEEAEKRARKTGSDLFDQE 174
            KL EDG P++P++ E LTP++A   A KTG D+F +E
Sbjct: 126 GKLKEDGQPIEPNEFEKLTPQQALDNATKTGCDIFTEE 163

Source: Lysiphlebus testaceipes

Species: Lysiphlebus testaceipes

Genus: Lysiphlebus

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391344802|ref|XP_003746684.1| PREDICTED: 39S ribosomal protein L41, mitochondrial-like [Metaseiulus occidentalis]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/148 (47%), Positives = 93/148 (62%), Gaps = 6/148 (4%)

Query: 29  GSTGASYGKKNFRKFNWINRGTQQHREEQKLNPDPRFTPTYGVRKVLQTSDGRPVVETIP 88
            ++ A  GK+NFRKF   NRG+       K+NP P      G R          + E IP
Sbjct: 11  STSCARLGKRNFRKFQMSNRGSIH----DKMNPGPE--EYVGARMPTMEGSSEIIPEMIP 64

Query: 89  ELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNPLQP 148
           EL+VP+LEGF LKPYVSY   E+   EFTA++LF  +Y EKI  DF+A KLDE GN L+P
Sbjct: 65  ELVVPDLEGFKLKPYVSYNVPEVNQSEFTAENLFEAMYTEKIEADFKAGKLDEHGNSLEP 124

Query: 149 SDNELLTPEEAEKRARKTGSDLFDQEVD 176
           S++E+L  EEA+ RA++TG+D F++  D
Sbjct: 125 SEDEMLGYEEAKARAQRTGADYFNRFWD 152

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012485|ref|XP_002426963.1| mitochondrial 50S ribosomal protein L41, putative [Pediculus humanus corporis] gi|212511192|gb|EEB14225.1| mitochondrial 50S ribosomal protein L41, putative [Pediculus humanus corporis]

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/140 (52%), Positives = 96/140 (68%), Gaps = 4/140 (2%)

Query: 36  GKKNFRKFNWIN-RGTQQHREEQKLNPDPRF-TPTYGVRKVLQTSDGRP--VVETIPELI 91
           GKKNFR+F   N RG+   R++Q+ NP P      YGVR+   T + +   V E IPE+I
Sbjct: 26  GKKNFRQFPLYNFRGSMAFRKKQQENPHPNIPIYKYGVREPGYTINNKFHFVPEMIPEII 85

Query: 92  VPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNPLQPSDN 151
           VP+L  F LKPYVSYR+++I   EFTAKDLF  +Y+EKI  DF   KLDEDGN L+P++ 
Sbjct: 86  VPDLTDFTLKPYVSYRSSDIMQTEFTAKDLFDAIYSEKIQNDFYKGKLDEDGNSLEPNNY 145

Query: 152 ELLTPEEAEKRARKTGSDLF 171
           E +T EEAE  A++TGSD+F
Sbjct: 146 EKMTEEEAELLAKQTGSDIF 165

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157129933|ref|XP_001661823.1| mitochondrial ribosomal protein, L41, putative [Aedes aegypti] gi|108872014|gb|EAT36239.1| AAEL011666-PA [Aedes aegypti]

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/151 (49%), Positives = 97/151 (64%), Gaps = 6/151 (3%)

Query: 27  GYGSTGASYGKKNFRKFNWIN-RGTQQHREEQKLNPD--PRF-TPTYGVRKVLQTSDGR- 81
           G  ++ A  GK NFRKF   N RGT+  ++ +  NP+  P       GVR    T DG+ 
Sbjct: 8   GISTSAAVAGKHNFRKFLLYNKRGTRIFKQLRAANPEQYPDMPIDKRGVRDTGVTRDGKY 67

Query: 82  -PVVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLD 140
             + E IPELIVPNL+G   KPYVSYR  E+   EFT++DLF  VYA+K+  DF++  L+
Sbjct: 68  HEIAEKIPELIVPNLDGCKFKPYVSYRAPEVIQSEFTSQDLFNAVYAQKVIDDFKSGNLN 127

Query: 141 EDGNPLQPSDNELLTPEEAEKRARKTGSDLF 171
           EDG P +PS+ E LTPEEA  RARK+GSD+F
Sbjct: 128 EDGTPKEPSEVEKLTPEEAWIRARKSGSDMF 158

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389610033|dbj|BAM18628.1| mitochondrial ribosomal protein L41 [Papilio xuthus]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/158 (48%), Positives = 100/158 (63%), Gaps = 13/158 (8%)

Query: 22  LVSGSGYGSTGASYGKKNFRKFNWIN-RGTQQHREEQ-----KLNPDPRFTPTYGVRKVL 75
           LVS  G   T A  GK+NFRKF   N RG++ H+E+Q     +L  D R     GVR V 
Sbjct: 10  LVSKRGICLTAAREGKRNFRKFVIPNKRGSRIHKEQQMSANRELEIDKR-----GVRDVG 64

Query: 76  QTSDGR--PVVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKD 133
              +G+   V E IPE+IVP+L  F LKPYVSY+  ++   EFTA+ LF  +Y++KI KD
Sbjct: 65  YELNGKFVKVPEMIPEIIVPDLTDFKLKPYVSYKAEDVIQSEFTAEHLFNAIYSKKIAKD 124

Query: 134 FEANKLDEDGNPLQPSDNELLTPEEAEKRARKTGSDLF 171
           F+  KLD +G PL+PS+ E L  EEA  RA++TGSD+F
Sbjct: 125 FQEGKLDSEGQPLEPSEEEKLQAEEAVIRAKRTGSDIF 162

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081117|ref|XP_975525.1| PREDICTED: similar to mitochondrial ribosomal protein, L41, putative [Tribolium castaneum] gi|270006026|gb|EFA02474.1| hypothetical protein TcasGA2_TC008165 [Tribolium castaneum]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/157 (49%), Positives = 102/157 (64%), Gaps = 10/157 (6%)

Query: 22  LVSGSGYGSTGASYGKKNFRKFNWIN-RGTQQHREEQKLNPDPRFTPTY---GVRKV-LQ 76
           L    G  ++ A +GK+NFRKF   N RG++  +E +K   DP +   +   G+R V   
Sbjct: 6   LFIKRGISTSCARFGKRNFRKFPIYNKRGSKIFKEMRK---DPNYDLPHDKRGLRDVGYY 62

Query: 77  TSDGRPVV--ETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDF 134
             DG  V+  E IPELIVP+L+ F LKPYVSYRT ++   EFTA+DLF  VYA KI KDF
Sbjct: 63  ADDGTFVLVPEKIPELIVPDLKDFPLKPYVSYRTPDVMQSEFTAEDLFNVVYAPKIAKDF 122

Query: 135 EANKLDEDGNPLQPSDNELLTPEEAEKRARKTGSDLF 171
           +  KL+EDG PL+PS  E +TPEEA  +A +TGSD+F
Sbjct: 123 KEGKLNEDGTPLEPSPEERMTPEEARIKAEQTGSDIF 159

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
FB|FBgn0034001	166	mRpL41 "mitochondrial ribosoma	0.708	0.807	0.521	1.9e-28
UNIPROTKB|Q291A0	166	mRpL41 "39S ribosomal protein	0.714	0.813	0.474	7.6e-25
MGI|MGI:1333816	135	Mrpl41 "mitochondrial ribosoma	0.444	0.622	0.458	1.3e-11
UNIPROTKB|A5PJ71	135	MRPL41 "Uncharacterized protei	0.317	0.444	0.516	5.8e-11
UNIPROTKB|E1BU45	135	MRPL41 "Uncharacterized protei	0.449	0.629	0.410	7.4e-11
RGD|1310241	134	Mrpl41 "mitochondrial ribosoma	0.444	0.626	0.431	1.2e-10
ZFIN|ZDB-GENE-050522-200	135	mrpl41 "mitochondrial ribosoma	0.423	0.592	0.440	6.6e-10
UNIPROTKB|Q8IXM3	137	MRPL41 "39S ribosomal protein	0.317	0.437	0.466	1.8e-09
UNIPROTKB|E2R2N8	135	MRPL41 "Uncharacterized protei	0.328	0.459	0.484	2.9e-09
UNIPROTKB|Q6INF3	135	mrpl41-b "39S ribosomal protei	0.460	0.644	0.380	3.6e-09

FB|FBgn0034001 mRpL41 "mitochondrial ribosomal protein L41" [Drosophila melanogaster (taxid:7227)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 73/140 (52%), Positives = 94/140 (67%)

Query:    37 KKNFRKFNWIN-RGTQQHREEQKL--NPDPRFTPTYGVRKVLQTSDGR--PVVETIPELI 91
             K+NFRKFN  N RGT+  +E QK   NP P      GVR      DG+   + E IP++I
Sbjct:    28 KRNFRKFNAYNKRGTRVVKEAQKTLANP-PVAIHKRGVRDTGILVDGQYVEIPEKIPDII 86

Query:    92 VPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNPLQPSDN 151
             VP+L G  LKPYVSY+  ++   EFT+ DLF  VY++KI +DF+A KL +DG+  +PS N
Sbjct:    87 VPDLTGCKLKPYVSYKAPDVVQSEFTSLDLFNAVYSQKIIEDFKAGKLQKDGSAKEPSVN 146

Query:   152 ELLTPEEAEKRARKTGSDLF 171
             E LTPEEA +RARKTGSD+F
Sbjct:   147 EQLTPEEALQRARKTGSDIF 166

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=ISS

UNIPROTKB|Q291A0 mRpL41 "39S ribosomal protein L41, mitochondrial" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 66/139 (47%), Positives = 86/139 (61%)

Query:    37 KKNFRKFN-WINRGTQQHREEQKLNPDPRFT-PTYGVRKVLQTSDGR--PVVETIPELIV 92
             K+NFRKFN    RGT+  +E QK   +P       GVR      DG+   + E IP++IV
Sbjct:    28 KRNFRKFNVHSKRGTRVVKEAQKTMANPPVPIDKRGVRDTGILVDGKFVEIPEKIPDIIV 87

Query:    93 PNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNPLQPSDNE 152
             P+L    LKPYVSY+  E+   EFT+ DLF  VY++KI +DF+A  L  DG+P +PS  E
Sbjct:    88 PDLTDCKLKPYVSYKAPEVVQSEFTSLDLFNAVYSKKIVEDFKAGSLQADGSPKEPSAEE 147

Query:   153 LLTPEEAEKRARKTGSDLF 171
              LT  EA  RAR+TGSD+F
Sbjct:   148 KLTSSEAFLRARRTGSDIF 166

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=ISS

MGI|MGI:1333816 Mrpl41 "mitochondrial ribosomal protein L41" [Mus musculus (taxid:10090)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 44/96 (45%), Positives = 56/96 (58%)

Query:    63 PR-FTPTYGVRKV-LQTSDGR--PVVETIPELIVPNLEGFNLKPYVSYRTNE-IQTPEFT 117
             PR FT + G +K  + TSD +   + E +PE +VP+L GF LKPYV+YR    I TP  T
Sbjct:    27 PRTFTKSRGAKKTGIYTSDRKFVQIKEMVPEFVVPDLTGFKLKPYVNYRAPAGIDTP-LT 85

Query:   118 AKDLFIEVYAEKINKDF-----EANKLDEDG-NPLQ 147
             AK LF E  A  I KDF     +AN L++ G  P Q
Sbjct:    86 AKALFQETVAPAIEKDFKEGTFDANNLEKYGFEPTQ 121

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=ISO

UNIPROTKB|A5PJ71 MRPL41 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 31/60 (51%), Positives = 38/60 (63%)

Query:    83 VVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDED 142
             V E +PEL+VP+L GF LKPYV+YR  E      TAK LF+E  A  I KDF+A   D +
Sbjct:    51 VKEMVPELVVPDLAGFKLKPYVNYRAPEGTDVPLTAKQLFLETAAPAIEKDFKAGTFDPE 110

GO:0006412 "translation" evidence=IEA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E1BU45 MRPL41 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 39/95 (41%), Positives = 55/95 (57%)

Query:    63 PR-FTPTYGVRKV-LQTSDGRPVV--ETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTA 118
             PR +    G +K+ + TS  + ++  E +P+ +VP+L GF LKPYVSYR  E   P  TA
Sbjct:    27 PRSYNKGRGAKKMGVLTSSKKFILIKEMVPQFVVPDLAGFKLKPYVSYRAPEGSEPPMTA 86

Query:   119 KDLFIEVYAEKINKD-----FEANKLDEDG-NPLQ 147
             K LF E+ A +I KD     F+ N L++ G  P Q
Sbjct:    87 KQLFTELVAPRIEKDVKEGTFDPNALEKYGFEPTQ 121

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|1310241 Mrpl41 "mitochondrial ribosomal protein L41" [Rattus norvegicus (taxid:10116)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 41/95 (43%), Positives = 55/95 (57%)

Query:    63 PR-FTPTYGVRKVLQTSDGR--PVVETIPELIVPNLEGFNLKPYVSYRTNE-IQTPEFTA 118
             PR FT + G +K    ++ +   + E +PE +VP+L GF LKPYV+YR    I TP  TA
Sbjct:    27 PRTFTKSRGAKKTGFYTNRKFVQIKEMVPEFVVPDLTGFKLKPYVNYRAPAGIDTP-LTA 85

Query:   119 KDLFIEVYAEKINKDF-----EANKLDEDG-NPLQ 147
             K LF+E  A  I KDF     +AN L++ G  P Q
Sbjct:    86 KALFLETVAPAIEKDFKEGTFDANNLEKYGFEPTQ 120

GO:0003735 "structural constituent of ribosome" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=ISO

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO;ISS

GO:0006412 "translation" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS

ZFIN|ZDB-GENE-050522-200 mrpl41 "mitochondrial ribosomal protein L41" [Danio rerio (taxid:7955)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 37/84 (44%), Positives = 45/84 (53%)

Query:    63 PR-FTPTYGVRKV-LQTSDGR--PVVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTA 118
             PR F  + G R   + TS  +  P+   IPE  VPNLEGFNLK YVSY+T        T 
Sbjct:    27 PRTFYKSRGARPTGIVTSSRKFIPIRAMIPEFAVPNLEGFNLKAYVSYKTPAGTEEPMTP 86

Query:   119 KDLFIEVYAEKINKDFEANKLDED 142
             + LF EV A +I +D E     ED
Sbjct:    87 EKLFNEVVAPQIQRDIEEGVFSED 110

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0005840 "ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

UNIPROTKB|Q8IXM3 MRPL41 "39S ribosomal protein L41, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 28/60 (46%), Positives = 34/60 (56%)

Query:    83 VVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDED 142
             + E +PE +VP+L GF LKPYVSY   E +    TA  LF E  A  I KDF+    D D
Sbjct:    53 IKEMVPEFVVPDLTGFKLKPYVSYLAPESEETPLTAAQLFSEAVAPAIEKDFKDGTFDPD 112

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|E2R2N8 MRPL41 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 31/64 (48%), Positives = 36/64 (56%)

Query:    79 DGRPVV--ETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEA 136
             DG+ V+  E +PEL+VP L GF LKPYV+YR         TAK LF E  A  I KDF  
Sbjct:    45 DGKFVLVKEMVPELVVPELTGFRLKPYVNYRVPAGTDQPLTAKQLFREAVAPAIEKDFRD 104

Query:   137 NKLD 140
                D
Sbjct:   105 GAFD 108

GO:0006412 "translation" evidence=IEA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q6INF3 mrpl41-b "39S ribosomal protein L41-B, mitochondrial" [Xenopus laevis (taxid:8355)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 35/92 (38%), Positives = 48/92 (52%)

Query:    48 RGTQQHRE-EQKLNPDPRFTPTYGVRKV-LQTSDGR--PVVETIPELIVPNLEGFNLKPY 103
             RG  +  E   KL P+  +    G +K+   TS G+   V E +P  +VP+L GF LKPY
Sbjct:    13 RGADRMAECTSKLGPNS-YNKGRGAKKIGYLTSSGKFVKVREMVPVFVVPDLTGFKLKPY 71

Query:   104 VSYRTNEIQTPEFTAKDLFIEVYAEKINKDFE 135
             VSY+         TAK LF+E    +I KD +
Sbjct:    72 VSYKAPPGTEDPMTAKKLFMETVGPQIEKDLQ 103

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7JZM8	RM41_DROME	No assigned EC number	0.5248	0.7142	0.8132	yes	N/A
Q291A0	RM41_DROPS	No assigned EC number	0.4785	0.7195	0.8192	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	189
pfam09809	113	pfam09809, MRP-L27, Mitochondrial ribosomal protei	1e-23

>gnl|CDD|220415 pfam09809, MRP-L27, Mitochondrial ribosomal protein L27

 Score = 89.8 bits (223), Expect = 1e-23
 Identities = 47/125 (37%), Positives = 63/125 (50%), Gaps = 19/125 (15%)

Query: 37  KKNFRKFNWIN-RGTQQHREEQKLNPDPRFTPTYGVRKV-LQTSDGRPVV--ETIPELIV 92
           K   R+F   + RG +   + +            G   +   TS GR V+  E +P  +V
Sbjct: 1   KGGNRRFPLTSKRGNKTFYKGR------------GASGIGRHTSSGRYVIIWEKVPTFVV 48

Query: 93  PNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDEDG---NPLQPS 149
           P+L GF LKPYVSY+  E+   EFTAKDLF  VYA KI KDF+   LD D       +P+
Sbjct: 49  PDLTGFKLKPYVSYKAPEVIQSEFTAKDLFNAVYAPKIFKDFKEGTLDPDLLEKKGKEPT 108

Query: 150 DNELL 154
           +   L
Sbjct: 109 EEGKL 113

Members of this family of proteins are components of the mitochondrial ribosome large subunit. They are also involved in apoptosis and cell cycle regulation. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
PF09809	113	MRP-L27: Mitochondrial ribosomal protein L27; Inte	100.0
KOG4756|consensus	146		99.88

>PF09809 MRP-L27: Mitochondrial ribosomal protein L27; InterPro: IPR019189 Proteins in this entry are components of the mitochondrial ribosome large subunit

Probab=100.00  E-value=9.6e-45  Score=283.12  Aligned_cols=106  Identities=46%  Similarity=0.737  Sum_probs=104.3

Q ss_pred             cccceeeeecc-ccchhhhhhhhcCCCCCCCCCCCCccceeee-cCcee--ecccCceecCCCCCCcccccccccCCCCC
Q psy3289          37 KKNFRKFNWIN-RGTQQHREEQKLNPDPRFTPTYGVRKVLQTS-DGRPV--VETIPELIVPNLEGFNLKPYVSYRTNEIQ  112 (189)
Q Consensus        37 krNFRKf~Lyn-rg~R~f~K~q~~np~~~~pig~G~~~~G~ht-~G~fV--~ekvPe~VVPDLtgFKLKPYVSyrtp~v~  112 (189)
                      |+|||+++|++ |||+.|||            |+|++++|+|+ +|+||  |+|||+||||||+||+|||||||++|.+.
T Consensus         1 K~~~rr~~LttK~g~k~fyK------------G~g~~~~G~~t~~g~yvi~~~kvp~~VVPdL~~f~LKPyVS~~~p~~~   68 (113)
T PF09809_consen    1 KRGFRRFPLTTKRGNKGFYK------------GTGARGTGRHTKKGGYVIVPEKVPEFVVPDLTDFKLKPYVSYRTPEVK   68 (113)
T ss_pred             CCcccccccccccCCccccC------------CcCCCCCcEEccCccEEECHHHCceeeCCCCCCCccccccccCccccc
Confidence            57999999999 99999999            99999999999 99999  99999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhhCCCCCCCC---CCCCCCCCCC
Q psy3289         113 TPEFTAKDLFIEVYAEKINKDFEANKLDEDGN---PLQPSDNELL  154 (189)
Q Consensus       113 ~~~~TA~~LF~~vyapkI~kDfKeG~~d~d~~---~~ePs~eekL  154 (189)
                      ++||||++||+++|||+|.+|||+|++|+|++   .+||+|+|+|
T Consensus        69 ~~~~Ta~~lf~~~~~~~i~~dfk~G~~d~~~~~~~~~e~~~~gkl  113 (113)
T PF09809_consen   69 QEEFTAKDLFNAVYAPKIFKDFKEGKLDPELLEKYGFEPSEEGKL  113 (113)
T ss_pred             cccccHHHHHHHHhhHHHhhhhhcCCCCHHHHHhhccCccccCcC
Confidence            99999999999999999999999999999999   7999999997

They are also involved in apoptosis and cell cycle regulation.

>KOG4756|consensus

Probab=99.88  E-value=9.9e-24  Score=170.94  Aligned_cols=108  Identities=19%  Similarity=0.278  Sum_probs=95.1

Q ss_pred             ccccceeeeecc-ccchhhhhhhhcCCCCCCCCCCCCccceeee-cCcee--ecccCceecCCCCCCcccccccccCCCC
Q psy3289          36 GKKNFRKFNWIN-RGTQQHREEQKLNPDPRFTPTYGVRKVLQTS-DGRPV--VETIPELIVPNLEGFNLKPYVSYRTNEI  111 (189)
Q Consensus        36 GkrNFRKf~Lyn-rg~R~f~K~q~~np~~~~pig~G~~~~G~ht-~G~fV--~ekvPe~VVPDLtgFKLKPYVSyrtp~v  111 (189)
                      |+-.|+.-.|.+ |++|.||.    ||. +++.|+||..+|+|| +|+|+  |||+||||||||+|||||||||      
T Consensus        27 ~~~a~glsK~g~kr~Pr~~k~----~~k-~l~kgtgakgiGfht~kggyvV~~ekv~eyVvPdl~gFkLkPYVs------   95 (146)
T KOG4756|consen   27 KKGASGLSKLGPKRAPRDFKL----NPK-ELHKGTGAKGIGFHTRKGGYVVQPEKVPEYVVPDLTGFKLKPYVS------   95 (146)
T ss_pred             cccccchhhhccccCchhhhc----Cch-hhcccccccccceeeccccEEeCHhhccceeccCccCceecccee------
Confidence            444566667888 99999885    443 677799999999999 67777  9999999999999999999999      


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhhCCCCCCCCC---CCCCCCCCC
Q psy3289         112 QTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNP---LQPSDNELL  154 (189)
Q Consensus       112 ~~~~~TA~~LF~~vyapkI~kDfKeG~~d~d~~~---~ePs~eekL  154 (189)
                      .+-|+++-+++..+.+|.++++++-++++++.+.   ||+.++.++
T Consensus        96 ~q~p~~~~q~~~~~~~p~serl~~l~t~ep~~~~~~~fE~a~~~t~  141 (146)
T KOG4756|consen   96 VQCPLRRVQVNTNESTPASERLADLHTVEPKMSAETLFELAYGDTV  141 (146)
T ss_pred             ccCchhHhhhcccccCccchhhhhccccCcccchhhccccccCcee
Confidence            7888999999999999999999999999999888   999988765

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00