Psyllid ID: psy3787

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLCKVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALTYNYVGDFFHFCLIKE
Secondary Structure (PSIPRED)
ccccccEEEccccccccccHHHHHccccccEEccccccccccccccccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHccccccEEEccccccccccHHccccccccEEEccccccccccHHHHHcccHHHHccccccccccccccccccccccccccEEEcccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEcccccccccccHHHHHcccccEEEccccccccccHHcccccccEEEccccccccccHHHHHHHccccEEEccccccccccHHHHcHHcccEEEccccccccccHHHHHHHcccEEEccccccccccHHHHccccccEEEccccccccccHHcccccHHHHHcHcEEEcccccccccccccHHHHHHHHHHHHHcccccccccccHHHHccccccEEEccccccccccHHHHHccccHEEEEccccccEEEEEcc
Coil and Loop (DISEMBL)
mlshlktldlshnklvsdslplfidmRSLTELNLsynqltmlpvctdcknlthLLLGFNkinnmendYFLTLTKLSLLNlknnkisevssnvgDLINLAildlsdneltdvpcelsslfhlkslflggnpiktvrNDILQDSKRIISHIKTsrldyhcqnvdgggmssqestseinidkykldrtktltlckvinipesvymrgmssqectieinidkykldrtktltlckvinipesvymnrpfaltynyvgdFFHFCLIKE
Flexible Loop (DISEMBL)
mlshlktldlshnklvsdslpLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDgggmssqestseinidkykldrtktltlckvinipesvymrgmssQECTIEInidkykldrtKTLTLCKVinipesvymNRPFALTYNYVGDFFHFCLIKE
Low Complexity Region (SEG)
MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFltltklsllnlknnkISEVSSNVGDLINLAILDLSDNELTDVPCElsslfhlkslflGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLCKVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALTYNYVGDFFHFCLIKE
Disordered region (IsUnstruct)
************NKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV*************INIDKYKLDRTKTLTLCKVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALTYNYVGDFFHFCLI**
Disordered Region (DISOPRED)
MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLCKVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALTYNYVGDFFHFCLIKE
Disordered Region (DISEMBL)
MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDG**********EINIDKYKLDRTKTLTLCKVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALTYNYVGDFFHFCLIKE
Disordered Region (DISPRO)
*LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLCKVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALTYNYVGDFFHFCLIKE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLCKVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALTYNYVGDFFHFCLIKE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
Q7SXW3	601	Leucine-rich repeat-conta	yes	N/A	0.737	0.322	0.307	7e-19
Q5M8G4	605	Leucine-rich repeat-conta	yes	N/A	0.752	0.327	0.325	3e-16
Q6GPJ5	605	Leucine-rich repeat-conta	N/A	N/A	0.851	0.370	0.305	1e-15
Q5ZLN0	603	Leucine-rich repeat-conta	yes	N/A	0.752	0.328	0.308	7e-14
Q9CRC8	602	Leucine-rich repeat-conta	yes	N/A	0.703	0.307	0.297	1e-13
Q9H9A6	602	Leucine-rich repeat-conta	yes	N/A	0.623	0.272	0.341	8e-13
Q4R3P6	602	Leucine-rich repeat-conta	N/A	N/A	0.623	0.272	0.329	9e-13
Q5RFE9	602	Leucine-rich repeat-conta	yes	N/A	0.623	0.272	0.329	1e-12
Q5R6B1	522	Leucine-rich repeat trans	no	N/A	0.570	0.287	0.299	1e-11
Q86UE6	522	Leucine-rich repeat trans	no	N/A	0.570	0.287	0.292	4e-11

>sp|Q7SXW3|LRC40_DANRE Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 111/208 (53%), Gaps = 14/208 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           + +L+ LD S N++ S   P+   M SL +L L +N+L  LP    CK L  L  G N+I
Sbjct: 217 MKNLRMLDCSRNQMESIP-PVLAQMESLEQLYLRHNKLRYLPELPCCKTLKELHCGNNQI 275

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
             +E ++   L  LSLL L++NK+  +   +  L  L  LDL++N+++ +PC L +L  L
Sbjct: 276 EVLEAEHLKHLNALSLLELRDNKVKSLPEEITLLQGLERLDLTNNDISSLPCGLGTLPKL 335

Query: 122 KSLFLGGNPIKTVRNDIL-QDSKRIISHIKTSRLDYHCQNVDGGGMSSQEST-------S 173
           KSL L GNP++ +R D+L + +  ++ ++++       Q    GG+  +  T       +
Sbjct: 336 KSLSLEGNPLRAIRRDLLTKGTGELLKYLRS-----RVQEPPNGGLKEEPKTAMTFPSQA 390

Query: 174 EINIDKYKLDRTKTLTLCKVINIPESVY 201
           +IN+   K  +T   +  +   IP+ V+
Sbjct: 391 KINVHAIKTLKTLDYSEKQDATIPDDVF 418

Danio rerio (taxid: 7955)

>sp|Q5M8G4|LRC40_XENTR Leucine-rich repeat-containing protein 40 OS=Xenopus tropicalis GN=lrrc40 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 111/206 (53%), Gaps = 8/206 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
           + +LK LD + N L  +++P  +  M SL +L L  N+LT LP       L  L +G N+
Sbjct: 219 MKNLKQLDCTSNLL--ENVPASVAGMESLEQLYLRQNKLTYLPELPFLTKLKELHVGNNQ 276

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           I  +  ++   L+ LS+L L+ NK+  +   +  L  L  LDLS+N+L  +PC L SL +
Sbjct: 277 IQTLGPEHLQNLSSLSVLELRYNKLKVLPEEISLLNGLERLDLSNNDLGSLPCTLGSLPN 336

Query: 121 LKSLFLGGNPIKTVRNDIL-QDSKRIISHIK--TSRLDYHCQNVDGGGMSSQESTSEINI 177
           LKSL L GNP++ +R DIL + ++ ++ ++K      D   Q  +    ++    SE  +
Sbjct: 337 LKSLQLEGNPLRGIRRDILNKGTQELLKYLKGRVQVPDVKTQEDENSTATAMTLPSESVV 396

Query: 178 DKYKLDRTKTLTLC--KVINIPESVY 201
           + + +   KTL  C  +   IPE+V+
Sbjct: 397 NTHAIVTLKTLEYCEKQASLIPEAVF 422

Xenopus tropicalis (taxid: 8364)

>sp|Q6GPJ5|LRC40_XENLA Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 125/252 (49%), Gaps = 28/252 (11%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
           + +L+ LD + N L  +++P  +  M SL +L L  N+LT LP       L  L +G N+
Sbjct: 219 MKNLRQLDCTSNLL--ENVPASVAGMESLEQLYLRQNKLTYLPELPFLTKLKELHVGNNQ 276

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           I  +  ++   L+ LS+L L+ NK+  +   +  L  L  LDLS+N++  +P  L SL +
Sbjct: 277 IQTLGPEHLQNLSSLSVLELRYNKLKVLPKEISLLKGLERLDLSNNDIGSLPDTLGSLPN 336

Query: 121 LKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQEST-------- 172
           LKSL L GNP++ +R DIL    + +       L Y    V    M++QE+         
Sbjct: 337 LKSLQLDGNPLRGIRRDILNKGTQEL-------LKYLKGRVQTPDMTTQEAANPPDTAMT 389

Query: 173 --SEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLT 228
             S+  I+ + +   KTL  C  +   IPE+V+    SS   T  +N  K +L    T  
Sbjct: 390 LPSDSVINAHAIMTLKTLEYCEKQASLIPEAVFNAAASSPITT--VNFSKNQL----TEV 443

Query: 229 LCKVINIPESVY 240
             +++ + +SVY
Sbjct: 444 PARIVEMKDSVY 455

Xenopus laevis (taxid: 8355)

>sp|Q5ZLN0|LRC40_CHICK Leucine-rich repeat-containing protein 40 OS=Gallus gallus GN=LRRC40 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 106/204 (51%), Gaps = 6/204 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
           +  L+ LD + N L  +S+P     M SL +L L  N+L  LP    CK L  L  G N+
Sbjct: 219 MKSLRQLDCTKNYL--ESVPSELASMASLEQLYLRKNKLRSLPELPSCKLLKELHAGENQ 276

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           I  +  +    L  LS+L L++NKI  V   +  L  L  LDL++N+++ +P  L +L  
Sbjct: 277 IEILNAENLKHLNSLSVLELRDNKIKSVPDEITLLQKLERLDLANNDISRLPYTLGNLSQ 336

Query: 121 LKSLFLGGNPIKTVRNDILQ-DSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK 179
           LK L L GNP++T+R D+LQ  ++ ++ ++++   D      +   +++    SE  I+ 
Sbjct: 337 LKFLALEGNPLRTIRRDLLQKGTQELLKYLRSRIQDDKASPNEEPPVTAMTLPSESRINM 396

Query: 180 YKLDRTKTLTLC--KVINIPESVY 201
           + +   K L     +V  IP+ V+
Sbjct: 397 HAITTLKLLDYSEKQVAVIPDDVF 420

Gallus gallus (taxid: 9031)

>sp|Q9CRC8|LRC40_MOUSE Leucine-rich repeat-containing protein 40 OS=Mus musculus GN=Lrrc40 PE=2 SV=2

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 98/188 (52%), Gaps = 3/188 (1%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           +  LK LD   N L+    P    M SL  L L  N+L +LP    C+ L  L L  N+I
Sbjct: 219 MKRLKHLDCDAN-LLETVPPDVGSMESLELLYLRRNKLRVLPEFPSCRQLKELHLAENQI 277

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
             +  ++   L  + +L+L+ NK+  V   +  L +L  LDLS+N+++ +PC L +L HL
Sbjct: 278 EKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLPCSLGNL-HL 336

Query: 122 KSLFLGGNPIKTVRNDIL-QDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKY 180
           K L L GNP++T+R +I+ + ++ ++ ++++   D      D    ++    SE  ++ +
Sbjct: 337 KFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTLPSEARVNIH 396

Query: 181 KLDRTKTL 188
            +   K L
Sbjct: 397 AIATLKLL 404

Mus musculus (taxid: 10090)

>sp|Q9H9A6|LRC40_HUMAN Leucine-rich repeat-containing protein 40 OS=Homo sapiens GN=LRRC40 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 88/173 (50%), Gaps = 9/173 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           +  LK LD + N L+    P    M SL  L L  N+L  LP    C  L  L +G N+I
Sbjct: 219 MKRLKHLDCNSN-LLETIPPELAGMESLELLYLRRNKLRFLPEFPSCSLLKELHVGENQI 277

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
             +E ++   L  + +L+L++NK+  V   +  L +L  LDLS+N+++ +P  L +L HL
Sbjct: 278 EMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLRSLERLDLSNNDISSLPYSLGNL-HL 336

Query: 122 KSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSE 174
           K L L GNP++T+R       + IIS      L Y    +   G S  ES +E
Sbjct: 337 KFLALEGNPLRTIR-------REIISKGTQEVLKYLRSKIKDDGPSQSESATE 382

Homo sapiens (taxid: 9606)

>sp|Q4R3P6|LRC40_MACFA Leucine-rich repeat-containing protein 40 OS=Macaca fascicularis GN=LRRC40 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 9/173 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           +  LK LD + N L+    P    M SL  L L  N+L  LP    C  L  L +G N+I
Sbjct: 219 MKRLKHLDCNSN-LLETIPPELAGMESLELLYLRRNKLRFLPEFPSCSLLKELHVGENQI 277

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
             +E ++   L  + +L+L++NK+  V   +  L +L  LDLS+N+++ +P  L +L HL
Sbjct: 278 EMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLQSLERLDLSNNDISSLPYSLGNL-HL 336

Query: 122 KSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSE 174
           K L L GNP++T+R +I+    + +       L Y    +   G S  ES +E
Sbjct: 337 KFLALEGNPLRTIRREIINKGTQEV-------LKYLRSKIKDDGPSQSESAAE 382

Macaca fascicularis (taxid: 9541)

>sp|Q5RFE9|LRC40_PONAB Leucine-rich repeat-containing protein 40 OS=Pongo abelii GN=LRRC40 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 9/173 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           +  LK LD + N L+    P    M SL  L L  N+L  LP    C  L  L +G N+I
Sbjct: 219 MKRLKHLDCNSN-LLETIPPELAGMESLELLYLRRNKLRFLPEFPSCSLLKELHVGENQI 277

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
             +E ++   L  + +L+L++NK+  V   +  L +L  LDLS+N+++ +P  L +L HL
Sbjct: 278 EMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLQSLERLDLSNNDISSLPYSLGNL-HL 336

Query: 122 KSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSE 174
           K L L GNP++T+R +I+    + +       L Y    +   G S  ES +E
Sbjct: 337 KFLALEGNPLRTIRREIINKGTQEV-------LKYLRSKIKDDGPSQSESATE 382

Pongo abelii (taxid: 9601)

>sp|Q5R6B1|LRRT1_PONAB Leucine-rich repeat transmembrane neuronal protein 1 OS=Pongo abelii GN=LRRTM1 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 94/157 (59%), Gaps = 7/157 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFN 59
           + +L+++DLS+NKL + +  LF  +R LT L++  N +  +PV    DC++L  L +G+N
Sbjct: 136 MPNLRSVDLSYNKLQALAPDLFHGLRKLTTLHMRANAIQFVPVRIFQDCRSLKFLDIGYN 195

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVS-SNVGDLINLAILDLSDNELTDVPCELSSL 118
           ++ ++  + F  L KL+ L+L++N + +V+ ++   LI+L  L L  N++  V   L  +
Sbjct: 196 QLKSLARNSFAGLFKLTELHLEHNDLVKVNFAHFPRLISLHSLCLRRNKVAIVVSSLDWV 255

Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLD 155
           ++LK + L GN I+ +   + +     + H+++ +LD
Sbjct: 256 WNLKKMDLSGNEIEYMEPHVFE----TVPHLQSLQLD 288

May play a role during the development of specific forebrain structures by influencing neuronal differentiation and connectivity, with a possible role in intracellular trafficking within axons.

Pongo abelii (taxid: 9601)

>sp|Q86UE6|LRRT1_HUMAN Leucine-rich repeat transmembrane neuronal protein 1 OS=Homo sapiens GN=LRRTM1 PE=2 SV=2

 Score = 68.6 bits (166), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 94/157 (59%), Gaps = 7/157 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFN 59
           + +L+++DLS+NKL + +  LF  +R LT L++  N +  +PV    DC++L  L +G+N
Sbjct: 136 MPNLRSVDLSYNKLQALAPDLFHGLRKLTTLHMRANAIQFVPVRIFQDCRSLKFLDIGYN 195

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVS-SNVGDLINLAILDLSDNELTDVPCELSSL 118
           ++ ++  + F  L KL+ L+L++N + +V+ ++   LI+L  L L  N++  V   L  +
Sbjct: 196 QLKSLARNSFAGLFKLTELHLEHNDLVKVNFAHFPRLISLHSLCLRRNKVAIVVSSLDWV 255

Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLD 155
           ++L+ + L GN I+ +   + +     + H+++ +LD
Sbjct: 256 WNLEKMDLSGNEIEYMEPHVFE----TVPHLQSLQLD 288

May play a role during the development of specific forebrain structures by influencing neuronal differentiation and connectivity, with a possible role in intracellular trafficking within axons.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
242005578	595	leucine-rich repeat-containing protein,	0.855	0.378	0.327	2e-21
170029739	612	leucine-rich repeat-containing protein 4	0.779	0.334	0.318	2e-17
158286480	626	AGAP006993-PA [Anopheles gambiae str. PE	0.813	0.341	0.303	2e-17
82240198	601	RecName: Full=Leucine-rich repeat-contai	0.737	0.322	0.307	4e-17
41282208	601	leucine-rich repeat-containing protein 4	0.733	0.321	0.314	4e-17
405971281	606	Leucine-rich repeat-containing protein 4	0.821	0.356	0.277	7e-17
443730785	610	hypothetical protein CAPTEDRAFT_182426 [	0.775	0.334	0.302	4e-16
270015218	621	hypothetical protein TcasGA2_TC008530 [T	0.745	0.315	0.305	4e-16
326428302	535	leucine rich repeat containing protein 4	0.718	0.353	0.314	4e-16
427794931	601	Putative mitotic protein, partial [Rhipi	0.794	0.347	0.315	4e-16

>gi|242005578|ref|XP_002423641.1| leucine-rich repeat-containing protein, putative [Pediculus humanus corporis] gi|212506801|gb|EEB10903.1| leucine-rich repeat-containing protein, putative [Pediculus humanus corporis]

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 128/235 (54%), Gaps = 10/235 (4%)

Query: 5   LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNM 64
           L+ L+LS+NK+ S  LP   DM+ L  + L +N+LT LP    C  L  + LGFN I  +
Sbjct: 219 LRDLNLSNNKITSSGLPDLFDMKKLEMIQLQHNKLTSLPCLRGCSELKEIHLGFNMIEEI 278

Query: 65  ENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSL 124
             +   TL+ L ++NL+NN + E+   +   +NL  LDLS+N+L ++P  LS L HL+ L
Sbjct: 279 TVEELSTLSHLKVINLRNNHLKELPKEISCFLNLVRLDLSNNDLMELPNTLSILPHLEIL 338

Query: 125 FLGGNPIKTVRNDILQ-DSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLD 183
            + GN ++++R DI+   + R+++H+K   L       +    S      E   D+Y + 
Sbjct: 339 LVEGNSLRSIRKDIIHGGTHRLLNHLK---LTMPLAEAEKYLQSQYPCEKEEFPDRYAMR 395

Query: 184 RTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDR--TKTLTLCKVIN 234
            +K L L    + N+ ++V+   ++   CTI +++ K KL    + T  LCK +N
Sbjct: 396 CSKALNLSNKSLCNVSKAVFEEALAVP-CTI-VDLSKNKLLEIPSGTWLLCKTLN 448

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170029739|ref|XP_001842749.1| leucine-rich repeat-containing protein 40 [Culex quinquefasciatus] gi|167864068|gb|EDS27451.1| leucine-rich repeat-containing protein 40 [Culex quinquefasciatus]

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 21/226 (9%)

Query: 2   LSHLKTLDLSHN--KLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFN 59
           L +L  LDL+ N  KL+    P+  ++R L  L + +N +  LP  T C  L  L +  N
Sbjct: 231 LRNLHKLDLAKNDLKLLP---PVMGELRKLECLYVQHNDVGELPDFTGCDALKELHISNN 287

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF 119
            I ++  D+   L +L +L+L++NKI ++   +  L +L  LDLS+N ++ +P  LS+L 
Sbjct: 288 FIKSIPADFCENLPQLKILDLRDNKIEKLPDEISMLASLTRLDLSNNSISSLPSCLSTLA 347

Query: 120 HLKSLFLGGNPIKTVRNDILQ-DSKRIISHIKTSRLDYHCQNVDGGGMSSQ------EST 172
           HL SL + GNPI+++R DI+Q  ++RI+  +K         + DG G SS+      E +
Sbjct: 348 HLVSLQVDGNPIRSIRRDIIQCGTQRILKTLK---------DRDGPGKSSEKVRVPFEES 398

Query: 173 SEINIDKYKLDRTKTLTLCKVINIPESVYMRGMSSQECTIEINIDK 218
           +  ++ + K  R+  ++   +I+IPE V++  M +    I+I+ +K
Sbjct: 399 TFPDVYQMKKGRSMIVSNKNLIDIPEQVFLDAMEASVYNIDISKNK 444

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158286480|ref|XP_308777.4| AGAP006993-PA [Anopheles gambiae str. PEST] gi|157020488|gb|EAA04662.4| AGAP006993-PA [Anopheles gambiae str. PEST]

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 122/237 (51%), Gaps = 23/237 (9%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L  L+ LDL+ N L     P+  ++R L    + +N +  LP  T C+ L  L +  N I
Sbjct: 229 LRKLQKLDLAKNDL-KKLPPVMGELRRLECFYVQHNDIDELPDFTGCEALKELHISNNYI 287

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
             +  D+   L +L +L+L++NKI ++   +  L +L  LDLS+N ++ +P  LS+L HL
Sbjct: 288 KTLPGDFCENLPQLKVLDLRDNKIEKLPDEIALLASLTRLDLSNNTISSLPSCLSTLAHL 347

Query: 122 KSLFLGGNPIKTVRNDILQ-DSKRIISHIKTSRLDYHCQNVDGGGMSSQES--------- 171
            SL + GNPI+++R DI+Q  ++RI   +KT R        DGG      +         
Sbjct: 348 VSLQVEGNPIRSIRRDIIQCGTQRI---LKTLRERDGTGKPDGGQKGVARAAASASTAVV 404

Query: 172 -----TSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKL 221
                T     D Y++ + + L +C   +++IPE+V++  + +  C   ++I K KL
Sbjct: 405 KNSLFTESTFPDVYQMRKGRALIVCSKALVDIPEAVFLDALEA--CVYNVDISKNKL 459

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|82240198|sp|Q7SXW3.1|LRC40_DANRE RecName: Full=Leucine-rich repeat-containing protein 40 gi|32766407|gb|AAH55223.1| Leucine rich repeat containing 40 [Danio rerio]

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 111/208 (53%), Gaps = 14/208 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           + +L+ LD S N++ S   P+   M SL +L L +N+L  LP    CK L  L  G N+I
Sbjct: 217 MKNLRMLDCSRNQMESIP-PVLAQMESLEQLYLRHNKLRYLPELPCCKTLKELHCGNNQI 275

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
             +E ++   L  LSLL L++NK+  +   +  L  L  LDL++N+++ +PC L +L  L
Sbjct: 276 EVLEAEHLKHLNALSLLELRDNKVKSLPEEITLLQGLERLDLTNNDISSLPCGLGTLPKL 335

Query: 122 KSLFLGGNPIKTVRNDIL-QDSKRIISHIKTSRLDYHCQNVDGGGMSSQEST-------S 173
           KSL L GNP++ +R D+L + +  ++ ++++       Q    GG+  +  T       +
Sbjct: 336 KSLSLEGNPLRAIRRDLLTKGTGELLKYLRS-----RVQEPPNGGLKEEPKTAMTFPSQA 390

Query: 174 EINIDKYKLDRTKTLTLCKVINIPESVY 201
           +IN+   K  +T   +  +   IP+ V+
Sbjct: 391 KINVHAIKTLKTLDYSEKQDATIPDDVF 418

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|41282208|ref|NP_956156.2| leucine-rich repeat-containing protein 40 [Danio rerio] gi|37595350|gb|AAQ94561.1| hypothetical protein FLJ20331 [Danio rerio]

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 112/207 (54%), Gaps = 14/207 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           + +L+ LD S N++ S   P+   M SL +L L +N+L  LP    CK L  L  G N+I
Sbjct: 217 MKNLRMLDCSRNQMESIP-PVLAQMESLEQLYLRHNKLRYLPELPCCKTLKELHCGNNQI 275

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
             +E ++   L  LSLL L++NK+  +   +  L  L  LDL++N+++ +PC L +L  L
Sbjct: 276 EVLEAEHLKHLNALSLLELRDNKVKSLPEEITLLQGLERLDLTNNDISSLPCGLGTLPKL 335

Query: 122 KSLFLGGNPIKTVRNDIL-QDSKRIISHIKTSRLDYHCQNVDGGGMSSQ-------ESTS 173
           KSL L GNP++ +R D+L + +  ++ ++++       Q    GG+  +       +S +
Sbjct: 336 KSLSLEGNPLRAIRRDLLTKGTGELLKYLRS-----RVQEPPNGGLKEEPKTAMTFQSQA 390

Query: 174 EINIDKYKLDRTKTLTLCKVINIPESV 200
           +INI   K  +T   +  +  +IP+ V
Sbjct: 391 KINIHAIKTLKTLDYSEKQDASIPDDV 417

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405971281|gb|EKC36127.1| Leucine-rich repeat-containing protein 40 [Crassostrea gigas]

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 129/227 (56%), Gaps = 11/227 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
           ++ LK LD++HN+L    LP  + ++ +L +L L +NQL+ +P+  +CKNL  + LG N+
Sbjct: 217 MNALKCLDVTHNQLTH--LPEDLGNLPNLEQLYLRHNQLSGIPLLKNCKNLKEIHLGNNQ 274

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           I  +  ++   L  +++L++++NKISE+   +  L  L  LDL++N+LT +P  L ++  
Sbjct: 275 IRKITAEHLQHLESVTVLDIRDNKISELPEEITCLSGLQRLDLTNNDLTGLPFVLGTITS 334

Query: 121 LKSLFLGGNPIKTVRNDILQDS-----KRIISHIKTSR-LDYHCQNVDGGGMSSQESTSE 174
           LKS+ L GNP+K++R DI+        K + S I+  + ++   + +  GG +     S 
Sbjct: 335 LKSIVLDGNPMKSIRRDIIMRGTVELKKYLCSRIEDPQPVEPTNKGIQNGGDTGIVGGSG 394

Query: 175 INIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKY 219
             +  + + ++K+L     K   +P+ ++   M +   ++ ++ +++
Sbjct: 395 EGLKAHDIQQSKSLDYSNKKATAVPDDIWEVAMKAGVTSVNLSKNQF 441

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|443730785|gb|ELU16143.1| hypothetical protein CAPTEDRAFT_182426 [Capitella teleta]

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 111/215 (51%), Gaps = 11/215 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFID-MRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
           +  L+TLD +HN+L   +LP  +  +  L +L L +N+LT LP    C  L  L LG N 
Sbjct: 221 MQGLRTLDATHNQL--HTLPDDLGHLNKLEQLYLRHNRLTHLPSLQHCTALKELHLGNNA 278

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           I  +  +    +  +S+L+L++N++++V S +  L  L  LDL++N ++ +P EL +L +
Sbjct: 279 IQGLSEEQLREMHSVSVLDLRDNRLTKVPSEIVLLQMLERLDLTNNNISALPYELGTLPN 338

Query: 121 LKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEI----- 175
           LKS+ L GNP+K++R DI+      +     SR+           + S + TS I     
Sbjct: 339 LKSIVLDGNPLKSIRRDIIMRGTNELKKYLRSRMAESAPTAPQSAVQSSKGTSGIVGGAS 398

Query: 176 -NIDKYKLDRTKTLTLC--KVINIPESVYMRGMSS 207
             +D + +  +K L     KV  IP+ ++    S 
Sbjct: 399 SGVDPHLVSSSKALDYSEKKVTAIPDELWAVAQSG 433

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|270015218|gb|EFA11666.1| hypothetical protein TcasGA2_TC008530 [Tribolium castaneum]

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 115/203 (56%), Gaps = 7/203 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L  L  LD++HN LV   LP   ++  L  L   +N +  +P    C +L  +  G N I
Sbjct: 225 LRGLLKLDVTHNDLVY--LPKMGELAKLQFLYAQHNNIEEIPDFEGCTHLQQVYFGNNYI 282

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
             +  D+   ++ L +L+L++NKI ++ + +  L +L  LDL++N+LTD+P  L  L HL
Sbjct: 283 KEVTTDFCENMSNLKILDLRDNKIEQIPNEIAMLQHLIRLDLTNNDLTDLPNSLGLLAHL 342

Query: 122 KSLFLGGNPIKTVRNDILQ-DSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKY 180
           ++L L GN +K +R DI++  + RI+ H+K    D   ++V    +S+ +  ++   DKY
Sbjct: 343 QNLQLEGNKLKKIRGDIIKGGTMRILKHLKEQLDDEDLESV--PKVSTMQHEAKTFPDKY 400

Query: 181 KLDRTKTL--TLCKVINIPESVY 201
            +  +++L  T+ ++ ++P+ V+
Sbjct: 401 TIKHSRSLNVTMKQLTSVPDDVF 423

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326428302|gb|EGD73872.1| leucine rich repeat containing protein 40 [Salpingoeca sp. ATCC 50818]

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 113/194 (58%), Gaps = 5/194 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFID-MRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
           LS +  L++ HN L +  +PL ++ M SLT L+L YN+LT LP   + K L  L LGFN 
Sbjct: 201 LSLITELEIIHNSLTA--VPLSLENMASLTRLDLRYNKLTALPRLCNLKALRELSLGFNS 258

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           I  + +      + L +L++++NK+ ++S ++  L  L  LD+++N+L  +P EL  L  
Sbjct: 259 ITTLGDIRATLPSGLCILDVRDNKLRDLSPSIVHLQALERLDVTNNDLATLPPELGVLPK 318

Query: 121 LKSLFLGGNPIKTVRNDIL-QDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTS-EINID 178
           LKS+ L GNP++++R DI+ + ++ I+ ++++   +     +  G + S+ S   +  + 
Sbjct: 319 LKSIVLDGNPMRSLRRDIIARGTQGILKYLRSRMTEEQLAELTSGSVQSEASAQRQEAVA 378

Query: 179 KYKLDRTKTLTLCK 192
           K ++  + TL L +
Sbjct: 379 KAEMKASATLDLSE 392

Source: Salpingoeca sp. ATCC 50818

Species: Salpingoeca sp. ATCC 50818

Genus: Salpingoeca

Family: Salpingoecidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|427794931|gb|JAA62917.1| Putative mitotic protein, partial [Rhipicephalus pulchellus]

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 113/225 (50%), Gaps = 16/225 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
           ++ L+ LD+S N+L   SLP  I  +  L +L    N+LT LP  T C  L  L +G N 
Sbjct: 213 MNALQILDVSSNRL--RSLPESIGSLCHLEQLFAQQNELTALPPFTSCGRLMELHVGNNA 270

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           +     +   TL  L  L+LK+NK+S +S ++  +  L  LDLS+N L  +P EL +L H
Sbjct: 271 MEEFPIEVIETLLSLKTLDLKSNKLSTLSPDITMIQGLERLDLSNNNLASLPYELGTLVH 330

Query: 121 LKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEIN---- 176
           LK L + GNP++ +R DI+   KR   H+     D   ++ +G         + +N    
Sbjct: 331 LKGLGVEGNPLRAIRRDIV---KRGTVHLLKWLQDRLGESPEGAARKRLSGGAALNDGSD 387

Query: 177 ----IDKYKLDRTKTLTLCK--VINIPESVYMRGMSSQECTIEIN 215
               I+K+ L  T  L L K  + ++PE ++         TI+++
Sbjct: 388 LIESIEKFALKTTHALELSKRSLHDVPEEIFKMAAECDANTIDLS 432

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
ZFIN|ZDB-GENE-030131-6062	601	lrrc40 "leucine rich repeat co	0.927	0.405	0.233	1.4e-12
MGI|MGI:1914394	602	Lrrc40 "leucine rich repeat co	0.950	0.415	0.213	1.1e-07
FB|FBgn0038504	641	Sur-8 "Sur-8" [Drosophila mela	0.403	0.165	0.353	1.3e-07
ZFIN|ZDB-GENE-060503-289	575	lrrc47 "leucine rich repeat co	0.631	0.288	0.290	4.3e-07
WB|WBGene00002632	699	let-413 [Caenorhabditis elegan	0.741	0.278	0.260	2.2e-06
UNIPROTKB|O61967	699	let-413 "Protein lap1" [Caenor	0.741	0.278	0.260	2.2e-06
UNIPROTKB|E1BX56	521	LRRTM1 "Uncharacterized protei	0.882	0.445	0.238	2.6e-06
FB|FBgn0028487	693	f-cup "flyers-cup" [Drosophila	0.657	0.249	0.268	2.6e-06
TAIR|locus:2120825	383	PIRL8 "AT4G26050" [Arabidopsis	0.688	0.472	0.302	2.6e-06
ZFIN|ZDB-GENE-040718-372	238	lrrc57 "leucine rich repeat co	0.566	0.626	0.268	3.2e-06

ZFIN|ZDB-GENE-030131-6062 lrrc40 "leucine rich repeat containing 40" [Danio rerio (taxid:7955)]

 Score = 177 (67.4 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 62/265 (23%), Positives = 115/265 (43%)

Query:     2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
             + +L+ LD S N++ S   P+   M SL +L L +N+L  LP    CK L  L  G N+I
Sbjct:   217 MKNLRMLDCSRNQMESIP-PVLAQMESLEQLYLRHNKLRYLPELPCCKTLKELHCGNNQI 275

Query:    62 NNMENDYFXXXXXXXXXXXXXXXISEVSSNVGDLINLAILDLSDNELTDVPCEXXXXXXX 121
               +E ++                +  +   +  L  L  LDL++N+++ +PC        
Sbjct:   276 EVLEAEHLKHLNALSLLELRDNKVKSLPEEITLLQGLERLDLTNNDISSLPCGLGTLPKL 335

Query:   122 XXXXXGGNPIKTVRNDIL-QDSKRIISHIKTSRLDYHCQNVDGGGMSSQEST-----SEI 175
                   GNP++ +R D+L + +  ++ +++ SR+    Q    GG+  +  T     S+ 
Sbjct:   336 KSLSLEGNPLRAIRRDLLTKGTGELLKYLR-SRV----QEPPNGGLKEEPKTAMTFPSQA 390

Query:   176 NIDKYKLDRTKTLTLCKV--INIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVI 233
              I+ + +   KTL   +     IP+ V+            +N  K +L    T    +++
Sbjct:   391 KINVHAIKTLKTLDYSEKQDATIPDDVF--DAVDGNPVANVNFSKNQL----TAVPHRIV 444

Query:   234 NIPESVY-MNRPFALTYNYVGDFFH 257
             ++ +S+  +N  F        DF H
Sbjct:   445 DLKDSLADINLGFNKLTTIPADFCH 469

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1914394 Lrrc40 "leucine rich repeat containing 40" [Mus musculus (taxid:10090)]

 Score = 146 (56.5 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 57/267 (21%), Positives = 113/267 (42%)

Query:     2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
             +  LK LD   N L  +++P  +  M SL  L L  N+L +LP    C+ L  L L  N+
Sbjct:   219 MKRLKHLDCDANLL--ETVPPDVGSMESLELLYLRRNKLRVLPEFPSCRQLKELHLAENQ 276

Query:    61 INNMENDYFXXXXXXXXXXXXXXXISEVSSNVGDLINLAILDLSDNELTDVPCEXXXXXX 120
             I  +  ++                +  V   +  L +L  LDLS+N+++ +PC       
Sbjct:   277 IEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLPCSLGNLHL 336

Query:   121 XXXXXXGGNPIKTVRNDIL-QDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK 179
                   G NP++T+R +I+ + ++ ++ ++++   D      D    ++    SE  ++ 
Sbjct:   337 KFLALEG-NPLRTIRREIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTLPSEARVNI 395

Query:   180 YKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPE 237
             + +   K L     +   IP+ ++    +       IN  K +L         +++ + E
Sbjct:   396 HAIATLKLLDYSDKQATLIPDDLF--DATKTTLITSINFSKNQLCEIPQ----RIVELKE 449

Query:   238 SVYMNRPFALTYNYVGDFFH-FCLIKE 263
              V       L++N +    H  CL+++
Sbjct:   450 MVL---DINLSFNKLSFISHELCLLQK 473

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0038504 Sur-8 "Sur-8" [Drosophila melanogaster (taxid:7227)]

 Score = 146 (56.5 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 40/113 (35%), Positives = 57/113 (50%)

Query:     3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCK---NLTHLLLGFN 59
             S LK LDL HNKL ++  P+   +RSLT L L +N++T   V  D +   NLT L L  N
Sbjct:   229 SQLKVLDLRHNKL-AEIPPVIYRLRSLTTLYLRFNRITA--VADDLRQLVNLTMLSLREN 285

Query:    60 KINNMENDYFXXXXXXXXXXXXXXXISEVSSNVGDLINLAILDLSDNELTDVP 112
             KI  +                    +  +  ++G+ +NL+ LDL  NEL D+P
Sbjct:   286 KIREL-GSAIGALVNLTTLDVSHNHLEHLPEDIGNCVNLSALDLQHNELLDIP 337

GO:0017016 "Ras GTPase binding" evidence=ISS

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

ZFIN|ZDB-GENE-060503-289 lrrc47 "leucine rich repeat containing 47" [Danio rerio (taxid:7955)]

 Score = 141 (54.7 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 52/179 (29%), Positives = 82/179 (45%)

Query:     2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFN 59
             L  +K LDLS N+L   +LP  I  +  L  LN+S N LT LP   + C  L  + +  N
Sbjct:   106 LKAVKVLDLSVNQL--QALPEEICALTELNTLNVSCNSLTALPDGLSKCVKLASINVSKN 163

Query:    60 KINNMENDYF-XXXXXXXXXXXXXXXISEVSSNVGDLINLAILDLSDNELTDVPCEXXXX 118
             +++ +  D +                I E+SS + +L +L +LDLS+N+L ++P E    
Sbjct:   164 ELSRLPEDLWCSGLELLSSIIASENAIEELSSEIQNLPSLKVLDLSNNKLQELPAELADC 223

Query:   119 XXXXXXXXGGNPIKTVRNDILQDSKRIISHIKT-SRLDYHCQNVDGGGMSSQESTSEIN 176
                      GN +K  R +      ++++   T S LDY      G G   Q+   E+N
Sbjct:   224 PKLKETNFKGNKLKDKRLE------KMVNGCPTKSVLDYLRAGGRGKGKGKQQD-GEVN 275

GO:0004826 "phenylalanine-tRNA ligase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

WB|WBGene00002632 let-413 [Caenorhabditis elegans (taxid:6239)]

 Score = 136 (52.9 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 54/207 (26%), Positives = 87/207 (42%)

Query:     2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFN 59
             L HL+ LD+S N+L    LP  I ++  L ELNL+ N +  LP    +CK LT L L  N
Sbjct:    58 LRHLRILDVSDNELAV--LPAEIGNLTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSN 115

Query:    60 KINNMENDYFXXXXXXXXXXXXXXXISEVSSNVGDLINLAILDLSDNELTDVPCEXXXXX 119
                 +  +                 ++ + SN+G L NL +L+  DN L  +P       
Sbjct:   116 PFTRLP-ETICECSSITILSLNETSLTLLPSNIGSLTNLRVLEARDNLLRTIPLSIVELR 174

Query:   120 XXXXXXXGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK 179
                    G N ++ +  +I + +     ++  + L     ++ G  M  Q   SE  I +
Sbjct:   175 KLEELDLGQNELEALPAEIGKLTSLREFYVDINSLTSLPDSISGCRMLDQLDVSENQIIR 234

Query:   180 Y--KLDRTKTLT-----LCKVINIPES 199
                 L R   LT     + ++I +P S
Sbjct:   235 LPENLGRMPNLTDLNISINEIIELPSS 261

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0060465 "pharynx development" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0030728 "ovulation" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0007043 "cell-cell junction assembly" evidence=IMP

GO:0030029 "actin filament-based process" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

UNIPROTKB|O61967 let-413 "Protein lap1" [Caenorhabditis elegans (taxid:6239)]

 Score = 136 (52.9 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 54/207 (26%), Positives = 87/207 (42%)

Query:     2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFN 59
             L HL+ LD+S N+L    LP  I ++  L ELNL+ N +  LP    +CK LT L L  N
Sbjct:    58 LRHLRILDVSDNELAV--LPAEIGNLTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSN 115

Query:    60 KINNMENDYFXXXXXXXXXXXXXXXISEVSSNVGDLINLAILDLSDNELTDVPCEXXXXX 119
                 +  +                 ++ + SN+G L NL +L+  DN L  +P       
Sbjct:   116 PFTRLP-ETICECSSITILSLNETSLTLLPSNIGSLTNLRVLEARDNLLRTIPLSIVELR 174

Query:   120 XXXXXXXGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK 179
                    G N ++ +  +I + +     ++  + L     ++ G  M  Q   SE  I +
Sbjct:   175 KLEELDLGQNELEALPAEIGKLTSLREFYVDINSLTSLPDSISGCRMLDQLDVSENQIIR 234

Query:   180 Y--KLDRTKTLT-----LCKVINIPES 199
                 L R   LT     + ++I +P S
Sbjct:   235 LPENLGRMPNLTDLNISINEIIELPSS 261

GO:0045108 "regulation of intermediate filament polymerization or depolymerization" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEP

GO:0015031 "protein transport" evidence=IEP

GO:0005912 "adherens junction" evidence=IDA

UNIPROTKB|E1BX56 LRRTM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 134 (52.2 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 58/243 (23%), Positives = 108/243 (44%)

Query:     2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFN 59
             + +L+++DLS+N L S    LF  +R LT L++  N +  +PV    DC++L  L +G+N
Sbjct:   136 MPNLRSVDLSYNNLQSLEPDLFHGLRKLTTLHMRSNAIKFVPVRIFQDCRSLKFLDIGYN 195

Query:    60 KINNMENDYFXXXXXXXXXXXXXXXISEVS-SNVGDLINLAILDLSDNELTDVPCEXXXX 118
             ++ ++  + F               + +V+ ++   LI+L  L L  N++T V       
Sbjct:   196 QLKSLARNSFAGLFKLTELHLEHNDLVKVNLAHFPRLISLHSLCLRRNKVTIVVNTLDWI 255

Query:   119 XXXXXXXXGGNPIKTVRNDILQDSKRIISHIKTSRLDYH-CQNVDGGGMSSQESTSEINI 177
                      GN I+ +   + +     + H+K+ +LD +    +D   + S +S + I++
Sbjct:   256 WQLEKLDLSGNEIEYIEPHVFES----VPHLKSLQLDSNRLTYIDSRILDSWKSLTSISL 311

Query:   178 DKYKLDRTKTLTLCKVINIPESVYMRGMSSQEC-TIEINIDKYKLDRTKTLTLCKVINIP 236
                  D  + +  C + +   S   R  S+  C T E    +  LD      LC+    P
Sbjct:   312 SANTWDCGRNV--CALASWLSSFKGRYDSNLLCATPEYAQGEDVLDAVYAFHLCEDTVDP 369

Query:   237 ESV 239
              SV
Sbjct:   370 TSV 372

GO:0007610 "behavior" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0035418 "protein localization to synapse" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

FB|FBgn0028487 f-cup "flyers-cup" [Drosophila melanogaster (taxid:7227)]

 Score = 125 (49.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
 Identities = 48/179 (26%), Positives = 78/179 (43%)

Query:     5 LKTLDLSHNKLVSDSLPLFIDM-RSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINN 63
             L+ +DL HN L S  LP  + + R L  L L +N +  LP     + L  L    N I  
Sbjct:   296 LQKIDLMHNDLTS--LPEDMGLLRKLDCLYLQHNDILELPEFEGNEALNELHASNNFIKI 353

Query:    64 MENDYFXXXXXXXXXXXXXXXISEVSSNVGDLINLAILDLSDNELTDVPCEXXXXXXXXX 123
             +                    I+E+   +  L NL  LD+S+N ++ +P           
Sbjct:   354 IPKAMCSNLPHLKILDLRDNKITELPDELCLLRNLNRLDVSNNTISVLPVTLSSLAHLIS 413

Query:   124 XXXGGNPIKTVRNDILQ-DSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYK 181
                 GNPIKT+R DILQ  + RI+  +   R     +  +GGG+    +++ I++ + +
Sbjct:   414 LQVEGNPIKTIRRDILQCGTTRILKTLH-DRAVAKAKE-EGGGVDDASTSAGISVTRLR 470

GO:0007265 "Ras protein signal transduction" evidence=ISS

TAIR|locus:2120825 PIRL8 "AT4G26050" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 58/192 (30%), Positives = 87/192 (45%)

Query:     2 LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
             LS LK L++S N L   SLP  I D RSL ELN ++N+LT LP  +  +  NLT L +  
Sbjct:   126 LSKLKFLNVSGNYL--QSLPKTIEDCRSLEELNANFNELTRLPDAIGFELTNLTKLSVNS 183

Query:    59 NKINNMENDYFXXXXXXXXXXXXXXXISEVSSNVGDLINLAILDLSDN--ELTDVPCEXX 116
             NK+  + N                  +S +  ++ +L+NL +L++S N   LT +P    
Sbjct:   184 NKLVLLPNSV-SYLTSLRVLDARLNRLSSLPEDLENLVNLQVLNVSQNFQHLTTLPYSVG 242

Query:   117 XXXXXXXXXXGGNPIKTVRNDILQDSKRI--ISHIKTSRLDYHCQNVDGGGMSSQESTSE 174
                         N I TV  D L   +RI  +S      +    + V+ G  + ++  SE
Sbjct:   243 LLISLVELDVSYNGI-TVLPDSLGCLRRIQKLSVEGNPLISPPFEVVEQGLEALKQYMSE 301

Query:   175 INIDKYKLDRTK 186
                + YK   TK
Sbjct:   302 KMTESYKKTPTK 313

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040718-372 lrrc57 "leucine rich repeat containing 57" [Danio rerio (taxid:7955)]

 Score = 127 (49.8 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 43/160 (26%), Positives = 71/160 (44%)

Query:     1 MLSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGF 58
             + ++L+T+DLS+NK+  + LP FI   + L    +S N+LT LP      K L  L+L  
Sbjct:    36 LTANLRTVDLSNNKI--EELPAFIGSFQHLKSFTISCNKLTSLPNDIGKLKKLETLILNG 93

Query:    59 NKINNMENDYFXXXXXXXXXXXXXXXISEVSSNVGDLINLAILDLSDNELTDVPCEXXXX 118
             N++  + +                    E  S +G L  L +LDLS N++  VP E    
Sbjct:    94 NQLKQLPSS-IGQLKSLRTLSLSGNQFKEFPSGLGTLRQLDVLDLSKNQIRVVPAEVAEL 152

Query:   119 XXXXXXXXGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC 158
                       N I +V  ++ +  +     +K  RL+ +C
Sbjct:   153 QAIEINL-NQNQISSVTQEVSRTPR-----LKVLRLEENC 186

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	263
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 58.4 bits (141), Expect = 8e-10
 Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 3/192 (1%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFN 59
           + S+LK LDLS NK+ S   PL  ++ +L  L+LS+N L+ LP + ++  NL +L L  N
Sbjct: 138 LKSNLKELDLSDNKIESLPSPLR-NLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN 196

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF 119
           KI+++  +  L L+ L  L+L NN I E+ S++ +L NL+ L+LS+N+L D+P  + +L 
Sbjct: 197 KISDLPPEIEL-LSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS 255

Query: 120 HLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK 179
           +L++L L  N I ++ +     + R +     S  +          +        + +  
Sbjct: 256 NLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKA 315

Query: 180 YKLDRTKTLTLC 191
            +L     L   
Sbjct: 316 LELKLNSILLNN 327

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 6e-08
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 4/156 (2%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTD--CKNLTHLLLGF 58
            L  L +LDL+ N+L S+   L  ++ +LT L+L  N +T +P        NL  L L  
Sbjct: 91  NLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSL 118
           NKI ++ +     L  L  L+L  N +S++   + +L NL  LDLS N+++D+P E+  L
Sbjct: 150 NKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELL 208

Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRL 154
             L+ L L  N I  + + +          +  ++L
Sbjct: 209 SALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL 244

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 3/125 (2%)

Query: 8   LDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLPVCTDCKNLTHLLLGFNKINNMEN 66
           LD+S+N L         DM SL  L+L+ N+    LP     K L +L L  N+ +    
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP 492

Query: 67  DYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHLKSL 124
               +L++L  L L  NK+S E+   +     L  LDLS N+L+  +P   S +  L  L
Sbjct: 493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552

Query: 125 FLGGN 129
            L  N
Sbjct: 553 DLSQN 557

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 3   SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLT-MLP-VCTDCKNLTHLLLGFN 59
             L+ LDLS N+  S ++P     +  L +L LS N+L+  +P   + CK L  L L  N
Sbjct: 475 KRLENLDLSRNQF-SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNEL 108
           +++      F  +  LS L+L  N++S E+  N+G++ +L  +++S N L
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 6e-06
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 50  NLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNEL 108
           NL  L L  N++  + +  F  L  L +L+L  N ++ +S      L +L  LDLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 23/128 (17%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKIN 62
           S + ++DLS   +          +  +  +NLS NQL+                      
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS---------------------G 107

Query: 63  NMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHL 121
            + +D F T + L  LNL NN  +      G + NL  LDLS+N L+ ++P ++ S   L
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166

Query: 122 KSLFLGGN 129
           K L LGGN
Sbjct: 167 KVLDLGGN 174

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 4/132 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT--MLPVCTDCKNLTHLLLGFN 59
           L +L+ L L  NKL     P    ++ L  L+LS N L+  +  +    +NL  L L  N
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSS 117
                      +L +L +L L +NK S E+  N+G   NL +LDLS N LT ++P  L S
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 118 LFHLKSLFLGGN 129
             +L  L L  N
Sbjct: 379 SGNLFKLILFSN 390

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 4/131 (3%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLPV-CTDCKNLTHLLLGFNK 60
           S LK LDL  N LV        ++ SL  L L+ NQL   +P      K+L  + LG+N 
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 61  INNMENDYFLTLTKLSLLNL-KNNKISEVSSNVGDLINLAILDLSDNELTD-VPCELSSL 118
           ++         LT L+ L+L  NN    + S++G+L NL  L L  N+L+  +P  + SL
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 119 FHLKSLFLGGN 129
             L SL L  N
Sbjct: 284 QKLISLDLSDN 294

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 28 SLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKI 85
          +L  L+LS N+LT++P        NL  L L  N + ++  + F  L  L  L+L  N +
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 22/133 (16%)

Query: 3   SHLKTLDLSHNKLVSDSL----PLFIDMRSLTELNLSYNQL------TMLPVCTDCKNLT 52
             L+ L L  N+L   S           R L ELNL+ N +       +        NL 
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196

Query: 53  HLLLGFNKINNMENDYFL-----TLTKLSLLNLKNNKISEV------SSNVGDLINLAIL 101
            L L  N + + E    L     +L  L +LNL +N +++       S+ +   I+L  L
Sbjct: 197 VLDLNNNGLTD-EGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255

Query: 102 DLSDNELTDVPCE 114
            LS N++TD   +
Sbjct: 256 SLSCNDITDDGAK 268

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 6e-05
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 4  HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKI 61
          +LK+LDLS+N+L       F  + +L  L+LS N LT +     +   +L  L L  N +
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 7e-05
 Identities = 19/38 (50%), Positives = 22/38 (57%)

Query: 2  LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQL 39
          L +LK LDLS N L S S   F  + SL  L+LS N L
Sbjct: 23 LPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 72  LTKLSLLNLKNNKI-SEVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHLKSLFLGGN 129
           L  L  +NL  N I   +  ++G + +L +LDLS N     +P  L  L  L+ L L GN
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 36.3 bits (85), Expect = 7e-04
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 28 SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMEN 66
          +L  L+LS NQ+T LP  ++  NL  L L  NKI ++  
Sbjct: 2  NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 74  KLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPI 131
            L  L+L NN+++ +       L NL +LDLS N LT + P   S L  L+SL L GN +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
KOG4194|consensus	873		99.86
KOG0472|consensus	565		99.83
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.83
KOG4194|consensus	873		99.82
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.8
KOG0444|consensus	1255		99.78
KOG0444|consensus	1255		99.77
KOG0472|consensus	565		99.72
KOG0617|consensus	264		99.71
KOG0617|consensus	264		99.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.62
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.59
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.59
KOG0618|consensus	1081		99.59
KOG4237|consensus	498		99.54
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.52
KOG0618|consensus	1081		99.52
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.5
KOG4237|consensus	498		99.46
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.43
KOG0532|consensus	722		99.34
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.34
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.33
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.31
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.3
KOG0532|consensus	722		99.24
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.22
KOG1259|consensus	490		99.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.13
KOG1259|consensus	490		98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
KOG0531|consensus	414		98.83
KOG3207|consensus	505		98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
KOG1909|consensus	382		98.77
KOG3207|consensus	505		98.74
KOG0531|consensus	414		98.69
KOG4579|consensus	177		98.66
PLN03150	623	hypothetical protein; Provisional	98.61
KOG1859|consensus	1096		98.58
PLN03150	623	hypothetical protein; Provisional	98.54
KOG1909|consensus	382		98.52
KOG1644|consensus	233		98.45
KOG1859|consensus	1096		98.42
KOG4658|consensus	889		98.34
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.29
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.26
KOG4658|consensus	889		98.23
KOG4579|consensus	177		98.22
KOG1644|consensus	233		98.1
KOG2982|consensus	418		97.91
KOG3665|consensus	699		97.86
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.67
KOG2120|consensus	419		97.64
KOG3665|consensus	699		97.63
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.61
KOG2120|consensus	419		97.48
KOG2982|consensus	418		97.46
PRK15386	426	type III secretion protein GogB; Provisional	97.41
PRK15386	426	type III secretion protein GogB; Provisional	97.34
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.29
KOG2739|consensus	260		97.2
KOG2123|consensus	388		97.16
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.12
KOG2123|consensus	388		96.74
KOG2739|consensus	260		96.02
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.92
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.67
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.54
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.01
smart00370	26	LRR Leucine-rich repeats, outliers.	95.01
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.17
smart00370	26	LRR Leucine-rich repeats, outliers.	94.17
KOG4308|consensus	478		93.16
KOG0473|consensus	326		92.81
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	88.5
KOG4341|consensus	483		86.74
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	85.68
KOG4308|consensus	478		83.53
KOG0473|consensus	326		82.08
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.7

>KOG4194|consensus

Probab=99.86  E-value=1.2e-22  Score=175.38  Aligned_cols=223  Identities=21%  Similarity=0.224  Sum_probs=142.0

Q ss_pred             CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--------------------------CCCCCCCCcEEEec
Q psy3787           4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--------------------------VCTDCKNLTHLLLG   57 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--------------------------~~~~~~~L~~L~l~   57 (263)
                      +++.|+|++|+++......|..+.+|..|.|+.|.++.+|                          .|..+++|+.+.+.
T Consensus       174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq  253 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ  253 (873)
T ss_pred             CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence            4555555555555543334555555555555555555444                          24444555555555


Q ss_pred             CCCCCCCchhhhhCCCCccEEEeecCcCccccc-cccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcc
Q psy3787          58 FNKINNMENDYFLTLTKLSLLNLKNNKISEVSS-NVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVR  135 (263)
Q Consensus        58 ~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~  135 (263)
                      +|.+.....++|.++.++++|++..|++..+-+ ++..+++|++|+++.|.|.++ +..|.-+++|+.|+++.|+|+.++
T Consensus       254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD  333 (873)
T ss_pred             hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence            555555555666677777777777777776643 457788889999999988877 556888889999999999999998


Q ss_pred             hHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccc-cccccCCcceeccc--cccccChhHHhhcCCccceeE
Q psy3787         136 NDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINI-DKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTI  212 (263)
Q Consensus       136 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~  212 (263)
                      ++.+... +.|+.|.++.+.+                ..+.. .+.++++|+.||++  .+...-++......++++|+.
T Consensus       334 ~~sf~~L-~~Le~LnLs~Nsi----------------~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk  396 (873)
T KOG4194|consen  334 EGSFRVL-SQLEELNLSHNSI----------------DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK  396 (873)
T ss_pred             hhHHHHH-HHhhhhcccccch----------------HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence            8877664 5667777766663                22221 25566677777776  443322233333334556776


Q ss_pred             EEeccCCcccccCccccccccccccccccCCc
Q psy3787         213 EINIDKYKLDRTKTLTLCKVINIPESVYMNRP  244 (263)
Q Consensus       213 ~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~  244 (263)
                       |++.||+|..||..++.++.++..+.+.+|+
T Consensus       397 -L~l~gNqlk~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  397 -LRLTGNQLKSIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             -eeecCceeeecchhhhccCcccceecCCCCc
Confidence             7777777777776666666666666666665

>KOG0472|consensus

Probab=99.83  E-value=2.8e-22  Score=166.34  Aligned_cols=217  Identities=30%  Similarity=0.489  Sum_probs=180.4

Q ss_pred             CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      |+.|+.+|.-.|-+..  +|+ ++.+.+|..|++..|++..+|.|.++..|.++.++.|.+..++......+.++..||+
T Consensus       182 m~~L~~ld~~~N~L~t--lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDL  259 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLET--LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDL  259 (565)
T ss_pred             HHHHHhcccchhhhhc--CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeec
Confidence            4567788888888877  666 9999999999999999999999999999999999999999998887889999999999


Q ss_pred             ecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhH-HHHhhhhhCCCCccccc
Q psy3787          81 KNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDS-KRIISHIKTSRLDYHCQ  159 (263)
Q Consensus        81 ~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~l~~l~~~~~~~~~~  159 (263)
                      ..|+++++|..+.-+.+|..+|+++|.|+.+|..++++ .|+.+.+.||++..+..++.... ...+.++... .  .|.
T Consensus       260 RdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~-~--~~d  335 (565)
T KOG0472|consen  260 RDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSK-I--KDD  335 (565)
T ss_pred             cccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHh-h--ccC
Confidence            99999999999999999999999999999999999999 99999999999999999999887 7778877651 1  111


Q ss_pred             cc---CCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787         160 NV---DGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT  226 (263)
Q Consensus       160 ~~---~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~  226 (263)
                      ..   +++..+.-.......++...+...++|+++  +++.+|+++|.... -.-... +++++|++.++|.
T Consensus       336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~-~~~Vt~-VnfskNqL~elPk  405 (565)
T KOG0472|consen  336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAK-SEIVTS-VNFSKNQLCELPK  405 (565)
T ss_pred             CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhh-hcceEE-EecccchHhhhhh
Confidence            10   111111111133445566778899999999  99999999998775 223677 9999999999997

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.83  E-value=6.5e-20  Score=176.80  Aligned_cols=151  Identities=27%  Similarity=0.364  Sum_probs=98.4

Q ss_pred             CCCCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      +++|+.|++++|++.. .+|.  +..+++|++|++++|.+........+++|++|++++|.+.+..+..++.+++|++|+
T Consensus        92 l~~L~~L~Ls~n~~~~-~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  170 (968)
T PLN00113         92 LPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD  170 (968)
T ss_pred             CCCCCEEECCCCccCC-cCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence            5667777777777654 2444  446777777777777766322234566777777777777655555677777777777


Q ss_pred             eecCcCc-cccccccCCCCcCEEEccCCcCC-CccccccCCCcccEEEecCCCCCC-cchHHHHhHHHHhhhhhCCCCc
Q psy3787          80 LKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHLKSLFLGGNPIKT-VRNDILQDSKRIISHIKTSRLD  155 (263)
Q Consensus        80 l~~~~l~-~lp~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~l~~l~~~~~~  155 (263)
                      +++|.+. .+|..+.++++|++|++++|.+. .+|..++.+++|+.|++++|.+.+ +|..+...  ..+++|+++.+.
T Consensus       171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~  247 (968)
T PLN00113        171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL--TSLNHLDLVYNN  247 (968)
T ss_pred             CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC--CCCCEEECcCce
Confidence            7777765 56777777777777777777766 456667777777777777777765 45443332  245555554444

>KOG4194|consensus

Probab=99.82  E-value=2.2e-21  Score=167.73  Aligned_cols=229  Identities=20%  Similarity=0.269  Sum_probs=181.7

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      |++|+.|+|..|.+.....-.|.++++|+.|.+..|.|..+.  .|-.+.++++|+++.|++..+..+++.+++.|+.|+
T Consensus       220 L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~  299 (873)
T KOG4194|consen  220 LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD  299 (873)
T ss_pred             cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhc
Confidence            445555566666555533334556666666666666666554  366788999999999999999888899999999999


Q ss_pred             eecCcCccc-cccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccc
Q psy3787          80 LKNNKISEV-SSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYH  157 (263)
Q Consensus        80 l~~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~  157 (263)
                      +++|.|.++ ++.|...++|++|+++.|.|+++++ .+..+..|+.|.+++|.++.+....+... ..|..|++..+.++
T Consensus       300 lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l-ssL~~LdLr~N~ls  378 (873)
T KOG4194|consen  300 LSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL-SSLHKLDLRSNELS  378 (873)
T ss_pred             cchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh-hhhhhhcCcCCeEE
Confidence            999999977 6778999999999999999999965 48899999999999999999888777664 67888998877742


Q ss_pred             ccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccccccc
Q psy3787         158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINI  235 (263)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l  235 (263)
                       +.+++           -...+.++++|+.|++.  +++.+|...|....   .|++ |||.+|.|..|...++..+ ++
T Consensus       379 -~~IED-----------aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~---~LE~-LdL~~NaiaSIq~nAFe~m-~L  441 (873)
T KOG4194|consen  379 -WCIED-----------AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLE---ALEH-LDLGDNAIASIQPNAFEPM-EL  441 (873)
T ss_pred             -EEEec-----------chhhhccchhhhheeecCceeeecchhhhccCc---ccce-ecCCCCcceeecccccccc-hh
Confidence             22222           22347789999999999  99999988777665   8999 9999999999999888877 77


Q ss_pred             ccccccCCceEEe
Q psy3787         236 PESVYMNRPFALT  248 (263)
Q Consensus       236 ~~~~~~~~~~~~~  248 (263)
                      .++.+.....+|.
T Consensus       442 k~Lv~nSssflCD  454 (873)
T KOG4194|consen  442 KELVMNSSSFLCD  454 (873)
T ss_pred             hhhhhcccceEEe
Confidence            7777777666554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.80  E-value=4.3e-19  Score=171.14  Aligned_cols=130  Identities=33%  Similarity=0.428  Sum_probs=68.8

Q ss_pred             CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCC-CCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLT-MLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~-~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      ++|++|++++|.+.. ..|. +.++++|++|++++|.+. .+| .+..+++|++|++++|.+.+..+..+..+.+|++|+
T Consensus       140 ~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        140 PNLETLDLSNNMLSG-EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             CCCCEEECcCCcccc-cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            344444444444433 1222 555555555555555544 233 245555555555555555544444455555555555


Q ss_pred             eecCcCc-cccccccCCCCcCEEEccCCcCC-CccccccCCCcccEEEecCCCCCC
Q psy3787          80 LKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHLKSLFLGGNPIKT  133 (263)
Q Consensus        80 l~~~~l~-~lp~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~l~~  133 (263)
                      +++|++. .+|..++.+++|++|++++|.+. .+|..++.+++|+.|++++|.+.+
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence            5555555 45555555556666666655554 345555556666666666665554

>KOG0444|consensus

Probab=99.78  E-value=2e-20  Score=163.31  Aligned_cols=241  Identities=24%  Similarity=0.261  Sum_probs=119.2

Q ss_pred             CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      ..|+.||+++|++..  +|. +...+++-.|++++|+|..+|.  +-++..|-+||+|+|++..+||. ...+..|++|.
T Consensus       103 ~dLt~lDLShNqL~E--vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~  179 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLRE--VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLK  179 (1255)
T ss_pred             ccceeeecchhhhhh--cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhh
Confidence            334444555554444  444 4444444444555554444442  33444444445555544444433 33333444444


Q ss_pred             eecCcCc--------------------------cccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCC
Q psy3787          80 LKNNKIS--------------------------EVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKT  133 (263)
Q Consensus        80 l~~~~l~--------------------------~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~  133 (263)
                      +++|.+.                          .+|..+-.+.+|..++++.|.+..+|..+..+.+|+.|++++|.|++
T Consensus       180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite  259 (1255)
T KOG0444|consen  180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE  259 (1255)
T ss_pred             cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee
Confidence            4443321                          12333334445555566666666666666666666666666666665


Q ss_pred             cchHHHHhHHHHhhhhhCCCCcccc------c--ccCCCCCCCcC-CcccccccccccCCcceeccc--cccccChhHHh
Q psy3787         134 VRNDILQDSKRIISHIKTSRLDYHC------Q--NVDGGGMSSQE-STSEINIDKYKLDRTKTLTLC--KVINIPESVYM  202 (263)
Q Consensus       134 ~~~~~~~~~~~~l~~l~~~~~~~~~------~--~~~~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~  202 (263)
                      +......-  ..++.|+++++++..      .  ++..-...... ....+|..|+.+.+|+.+...  .+.-+|+.+..
T Consensus       260 L~~~~~~W--~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcR  337 (1255)
T KOG0444|consen  260 LNMTEGEW--ENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCR  337 (1255)
T ss_pred             eeccHHHH--hhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhh
Confidence            44322111  233444444444200      0  00000000000 034566667777777777666  55666776666


Q ss_pred             hcCCccceeEEEeccCCcccccCccccccccccccccccCCceEEecccccc
Q psy3787         203 RGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALTYNYVGD  254 (263)
Q Consensus       203 ~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  254 (263)
                      +.+    |+. |.|++|++-++|..... +..+..+.+..||.+-++.-..|
T Consensus       338 C~k----L~k-L~L~~NrLiTLPeaIHl-L~~l~vLDlreNpnLVMPPKP~d  383 (1255)
T KOG0444|consen  338 CVK----LQK-LKLDHNRLITLPEAIHL-LPDLKVLDLRENPNLVMPPKPND  383 (1255)
T ss_pred             hHH----HHH-hcccccceeechhhhhh-cCCcceeeccCCcCccCCCCcch
Confidence            665    777 77777777777764432 34455566667776655544333

>KOG0444|consensus

Probab=99.77  E-value=2.4e-20  Score=162.82  Aligned_cols=211  Identities=24%  Similarity=0.379  Sum_probs=150.4

Q ss_pred             CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      |+.|+.+.+.+|++....+|+ +.++..|+.||+++|+++.+|. +...+++-.|++|+|+|.++|.+.|-.+..|-.|+
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD  156 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD  156 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence            567788888888888777887 8889999999999999998884 77778888899999999999988888888999999


Q ss_pred             eecCcCccccccccCCCCcCEEEccCCcCCCcc-ccccCCCcccEEEecCCC--CCCcchHHHHhHHHHhhhhhCCCCcc
Q psy3787          80 LKNNKISEVSSNVGDLINLAILDLSDNELTDVP-CELSSLFHLKSLFLGGNP--IKTVRNDILQDSKRIISHIKTSRLDY  156 (263)
Q Consensus        80 l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~~l~~l~~~~~~~  156 (263)
                      +++|++..+|..+..+..|++|.+++|.+..+. ..+..+++|+.|.+++..  +..+|..+-...  .+..++++.+. 
T Consensus       157 LS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~--NL~dvDlS~N~-  233 (1255)
T KOG0444|consen  157 LSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH--NLRDVDLSENN-  233 (1255)
T ss_pred             cccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh--hhhhccccccC-
Confidence            999999999988888888999999988776432 134556666777776653  333665544443  55566665555 


Q ss_pred             cccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccc
Q psy3787         157 HCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVIN  234 (263)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~  234 (263)
                                     ..-.|..+..+++|+.|+++  .|+++......    +.+|++ |++|.|+++.+|. +.|++.+
T Consensus       234 ---------------Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~----W~~lEt-LNlSrNQLt~LP~-avcKL~k  292 (1255)
T KOG0444|consen  234 ---------------LPIVPECLYKLRNLRRLNLSGNKITELNMTEGE----WENLET-LNLSRNQLTVLPD-AVCKLTK  292 (1255)
T ss_pred             ---------------CCcchHHHhhhhhhheeccCcCceeeeeccHHH----Hhhhhh-hccccchhccchH-HHhhhHH
Confidence                           34455566666666666666  56655443332    224666 6666666666665 3344444


Q ss_pred             cc
Q psy3787         235 IP  236 (263)
Q Consensus       235 l~  236 (263)
                      +.
T Consensus       293 L~  294 (1255)
T KOG0444|consen  293 LT  294 (1255)
T ss_pred             HH
Confidence            43

>KOG0472|consensus

Probab=99.72  E-value=4.8e-20  Score=153.17  Aligned_cols=232  Identities=20%  Similarity=0.274  Sum_probs=116.1

Q ss_pred             CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      +..+..+++++|++..  .|+ +..+..+..++.++|++..+| .+....++..++++.|.+.+.+++ ++.+-.++.++
T Consensus        67 L~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~  143 (565)
T KOG0472|consen   67 LACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS-IGRLLDLEDLD  143 (565)
T ss_pred             ccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch-HHHHhhhhhhh
Confidence            3445566666666655  333 555556666666666665555 344455555555555555555444 33444455555


Q ss_pred             eecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccc
Q psy3787          80 LKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQ  159 (263)
Q Consensus        80 l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~  159 (263)
                      ..+|+++++|+.+..+.++..+++.+|.++.+|+..-.++.|++++...|.++.+|++++...  .+.-+++.++.+...
T Consensus       144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~--~L~~LyL~~Nki~~l  221 (565)
T KOG0472|consen  144 ATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLE--SLELLYLRRNKIRFL  221 (565)
T ss_pred             ccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchh--hhHHHHhhhcccccC
Confidence            555555555555545545555555555555444443334455555555555555555443332  222222222221000


Q ss_pred             -ccCCCCC----C-CcCCcccccccc-cccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccc
Q psy3787         160 -NVDGGGM----S-SQESTSEINIDK-YKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLC  230 (263)
Q Consensus       160 -~~~~~~~----~-~~~~~~~~~~~~-~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~  230 (263)
                       .+.+...    + +.....-+|-+. +.++++..||++  +++++|+++.-...    |.+ ||+|+|.|+.+|.....
T Consensus       222 Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrs----L~r-LDlSNN~is~Lp~sLgn  296 (565)
T KOG0472|consen  222 PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRS----LER-LDLSNNDISSLPYSLGN  296 (565)
T ss_pred             CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhh----hhh-hcccCCccccCCccccc
Confidence             0000000    0 000022233332 356677777777  77777777665443    777 77777777777653322


Q ss_pred             cccccccccccCCce
Q psy3787         231 KVINIPESVYMNRPF  245 (263)
Q Consensus       231 ~~~~l~~~~~~~~~~  245 (263)
                       + .+..+...|||.
T Consensus       297 -l-hL~~L~leGNPl  309 (565)
T KOG0472|consen  297 -L-HLKFLALEGNPL  309 (565)
T ss_pred             -c-eeeehhhcCCch
Confidence             2 566667777773

>KOG0617|consensus

Probab=99.71  E-value=2.8e-19  Score=133.06  Aligned_cols=137  Identities=30%  Similarity=0.449  Sum_probs=79.5

Q ss_pred             CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      ++++.|.+++|+++.  +|+ ++.+.+|+.|++++|++..+| .+..+++|++|+++.|++...+.+ |+.++.|+.|++
T Consensus        33 s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhc
Confidence            445555666666655  444 666666666666666666555 355566666666666655544333 555666666666


Q ss_pred             ecCcCc--cccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhH
Q psy3787          81 KNNKIS--EVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDS  142 (263)
Q Consensus        81 ~~~~l~--~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  142 (263)
                      ++|++.  .+|..+.-+..|+.+++++|.+.-+|..++++++|+.+.+++|.+-++|.++....
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt  173 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLT  173 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHH
Confidence            666555  45555555555666666666665556566666666666666666555555544443

>KOG0617|consensus

Probab=99.71  E-value=1e-18  Score=130.04  Aligned_cols=183  Identities=22%  Similarity=0.258  Sum_probs=139.6

Q ss_pred             CcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcc
Q psy3787          42 LPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL  121 (263)
Q Consensus        42 l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L  121 (263)
                      ++.+-.+...+.|.+++|.++.++|. +..+.+|+.|++.+|.+.++|..++.+++|++++++.|++..+|..|+.++.|
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l  104 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL  104 (264)
T ss_pred             cccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence            34444555666677788887777766 67788888888888888888888888888888888888888888888888888


Q ss_pred             cEEEecCCCCCC--cchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccC
Q psy3787         122 KSLFLGGNPIKT--VRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIP  197 (263)
Q Consensus       122 ~~L~l~~n~l~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~  197 (263)
                      +.+++..|.+.+  +|...+-..  .++.+.+.+++                ..-+|++++.+++|+.|.++  .+-++|
T Consensus       105 evldltynnl~e~~lpgnff~m~--tlralyl~dnd----------------fe~lp~dvg~lt~lqil~lrdndll~lp  166 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMT--TLRALYLGDND----------------FEILPPDVGKLTNLQILSLRDNDLLSLP  166 (264)
T ss_pred             hhhhccccccccccCCcchhHHH--HHHHHHhcCCC----------------cccCChhhhhhcceeEEeeccCchhhCc
Confidence            888888888776  666655544  67777777777                46688899999999999999  888999


Q ss_pred             hhHHhhcCCccceeEEEeccCCcccccCcccc-ccc-cccccccccCCceEEe
Q psy3787         198 ESVYMRGMSSQECTIEINIDKYKLDRTKTLTL-CKV-INIPESVYMNRPFALT  248 (263)
Q Consensus       198 ~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~-~~~-~~l~~~~~~~~~~~~~  248 (263)
                      .++..+..    |+. |.+.+|+++.+|+... .++ .+-.......|||...
T Consensus       167 keig~lt~----lre-lhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~p  214 (264)
T KOG0617|consen  167 KEIGDLTR----LRE-LHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNP  214 (264)
T ss_pred             HHHHHHHH----HHH-HhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence            99998876    998 9999999998887321 111 1122335566666543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.62  E-value=1.5e-15  Score=140.49  Aligned_cols=122  Identities=25%  Similarity=0.320  Sum_probs=75.1

Q ss_pred             CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787           4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN   82 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~   82 (263)
                      +...|++++++++.  +|. +.  +.++.|++++|.++.+|.. ...+|+.|++++|.+..++.. +  ...|+.|++++
T Consensus       179 ~~~~L~L~~~~Lts--LP~~Ip--~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~-l--~~~L~~L~Ls~  250 (754)
T PRK15370        179 NKTELRLKILGLTT--IPACIP--EQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPAT-L--PDTIQEMELSI  250 (754)
T ss_pred             CceEEEeCCCCcCc--CCcccc--cCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChh-h--hccccEEECcC
Confidence            34567777766665  444 32  4577777777777766631 124677777777776665543 2  23567777777


Q ss_pred             CcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchH
Q psy3787          83 NKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRND  137 (263)
Q Consensus        83 ~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~  137 (263)
                      |.+..+|..+.  .+|+.|++++|.++.+|..+.  .+|+.|++++|.++.+|..
T Consensus       251 N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~  301 (754)
T PRK15370        251 NRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH  301 (754)
T ss_pred             CccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCccc
Confidence            77776666543  356777777777766665443  3667777777777666543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.59  E-value=3.9e-15  Score=137.31  Aligned_cols=120  Identities=28%  Similarity=0.306  Sum_probs=60.7

Q ss_pred             CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhh-------------
Q psy3787           4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFL-------------   70 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~-------------   70 (263)
                      +++.|++.+|+++.  +|.+  .++|++|++++|+++.+|.+  .++|+.|++++|.+..++.. +.             
T Consensus       223 ~L~~L~L~~N~Lt~--LP~l--p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l-p~~L~~L~Ls~N~Lt  295 (788)
T PRK15387        223 HITTLVIPDNNLTS--LPAL--PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL-PSGLCKLWIFGNQLT  295 (788)
T ss_pred             CCCEEEccCCcCCC--CCCC--CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc-hhhcCEEECcCCccc
Confidence            46777777777776  5542  46777777777777766632  23555555555554433220 00             


Q ss_pred             ----CCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcch
Q psy3787          71 ----TLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRN  136 (263)
Q Consensus        71 ----~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~  136 (263)
                          ..++|+.|++++|+++.+|...   ..|+.|++++|.++.+|..   ..+|+.|++++|.|+++|.
T Consensus       296 ~LP~~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~  359 (788)
T PRK15387        296 SLPVLPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPT  359 (788)
T ss_pred             cccccccccceeECCCCccccCCCCc---ccccccccccCcccccccc---ccccceEecCCCccCCCCC
Confidence                1234455555555444443311   1233333333333333321   1256666666666666653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.59  E-value=2.2e-14  Score=132.75  Aligned_cols=185  Identities=21%  Similarity=0.303  Sum_probs=146.2

Q ss_pred             CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      ++++.|++++|+++.  +|. +.  ++|+.|++++|.++.+|.- -..+|+.|++++|.+..++.. +  ..+|+.|+++
T Consensus       199 ~~L~~L~Ls~N~Lts--LP~~l~--~nL~~L~Ls~N~LtsLP~~-l~~~L~~L~Ls~N~L~~LP~~-l--~s~L~~L~Ls  270 (754)
T PRK15370        199 EQITTLILDNNELKS--LPENLQ--GNIKTLYANSNQLTSIPAT-LPDTIQEMELSINRITELPER-L--PSALQSLDLF  270 (754)
T ss_pred             cCCcEEEecCCCCCc--CChhhc--cCCCEEECCCCccccCChh-hhccccEEECcCCccCcCChh-H--hCCCCEEECc
Confidence            468899999999997  665 32  5899999999999988841 135799999999999988765 3  2579999999


Q ss_pred             cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccccc
Q psy3787          82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV  161 (263)
Q Consensus        82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  161 (263)
                      +|+++.+|..+.  .+|+.|++++|.++.+|..+.  .+|+.|++++|.++.+|....    ..+..|+++.+.      
T Consensus       271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~----~sL~~L~Ls~N~------  336 (754)
T PRK15370        271 HNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP----PGLKTLEAGENA------  336 (754)
T ss_pred             CCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcccc----ccceeccccCCc------
Confidence            999999988764  579999999999999886554  478999999999999886543    345667666665      


Q ss_pred             CCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccc
Q psy3787         162 DGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLT  228 (263)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~  228 (263)
                                ...+|..+.  ++|+.|+++  +++.+|..+.  .    .|+. |++++|+|+.+|...
T Consensus       337 ----------Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~----~L~~-LdLs~N~Lt~LP~~l  386 (754)
T PRK15370        337 ----------LTSLPASLP--PELQVLDVSKNQITVLPETLP--P----TITT-LDVSRNALTNLPENL  386 (754)
T ss_pred             ----------cccCChhhc--CcccEEECCCCCCCcCChhhc--C----CcCE-EECCCCcCCCCCHhH
Confidence                      333454443  689999999  8888887553  2    5999 999999999998743

>KOG0618|consensus

Probab=99.59  E-value=1.1e-16  Score=145.14  Aligned_cols=214  Identities=22%  Similarity=0.269  Sum_probs=136.6

Q ss_pred             CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +++.+++++|++..  +|. +..+.+|+.++..+|.+..+| .+....+|+.+.+.+|.+..+++. ..+...|++|++.
T Consensus       242 nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~-le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSN--LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPF-LEGLKSLRTLDLQ  318 (1081)
T ss_pred             cceeeecchhhhhc--chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCc-ccccceeeeeeeh
Confidence            46667777777766  556 666777777777777776554 233344444455555555444432 3345555555555


Q ss_pred             cCcCccccccc--------------------------cCCCCcCEEEccCCcCCC-ccccccCCCcccEEEecCCCCCCc
Q psy3787          82 NNKISEVSSNV--------------------------GDLINLAILDLSDNELTD-VPCELSSLFHLKSLFLGGNPIKTV  134 (263)
Q Consensus        82 ~~~l~~lp~~~--------------------------~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~  134 (263)
                      .|++..+|..+                          .....|+.|++.+|.++. .-+.+....+|+.|++++|.+.++
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f  398 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF  398 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence            55555444321                          112345666677777763 333567778888888888888888


Q ss_pred             chHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeE
Q psy3787         135 RNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTI  212 (263)
Q Consensus       135 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~  212 (263)
                      |...+... ..+++|.++++.                ...+|.++..++.|+.|...  ++..+| ++....    +|+.
T Consensus       399 pas~~~kl-e~LeeL~LSGNk----------------L~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~----qL~~  456 (1081)
T KOG0618|consen  399 PASKLRKL-EELEELNLSGNK----------------LTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLP----QLKV  456 (1081)
T ss_pred             CHHHHhch-HHhHHHhcccch----------------hhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcC----cceE
Confidence            87655553 677788888887                56777778888888888877  777777 555444    4888


Q ss_pred             EEeccCCcccc--cCccccccccccccccccCCce
Q psy3787         213 EINIDKYKLDR--TKTLTLCKVINIPESVYMNRPF  245 (263)
Q Consensus       213 ~L~ls~n~l~~--ip~~~~~~~~~l~~~~~~~~~~  245 (263)
                       +|+|.|.|++  +|....  -.++.++.+.||+.
T Consensus       457 -lDlS~N~L~~~~l~~~~p--~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  457 -LDLSCNNLSEVTLPEALP--SPNLKYLDLSGNTR  488 (1081)
T ss_pred             -EecccchhhhhhhhhhCC--CcccceeeccCCcc
Confidence             8888888774  333222  15566777777774

>KOG4237|consensus

Probab=99.54  E-value=2.9e-16  Score=130.51  Aligned_cols=240  Identities=20%  Similarity=0.316  Sum_probs=130.6

Q ss_pred             CCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEE-ecCCCCCCCchhhhhCCCCccEEE
Q psy3787           5 LKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLL-LGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         5 L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~-l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      ..+++|..|.|+.  +|+  |+.+++|+.|||++|.|+.+.  +|.+++.+..|- .++|+|++++.++|.++..++.|.
T Consensus        69 tveirLdqN~I~~--iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   69 TVEIRLDQNQISS--IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             ceEEEeccCCccc--CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            3456666666666  444  666666666666666666543  366665555543 344666666666666666666666


Q ss_pred             eecCcCcccc-ccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCC---cc----------hHHH--HhH
Q psy3787          80 LKNNKISEVS-SNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKT---VR----------NDIL--QDS  142 (263)
Q Consensus        80 l~~~~l~~lp-~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~---~~----------~~~~--~~~  142 (263)
                      +.-|++.-++ +.+..++++..|.+-+|.+..++. .+..+.+++.+.+..|++-.   ++          -+..  ...
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            6666666443 345666667777777777766655 46666666666666665210   00          0000  000


Q ss_pred             -HHHhhhhhCCCCc---ccccccCCC--CCCCcCCccccc--ccccccCCcceeccc--cccccChhHHhhcC-------
Q psy3787         143 -KRIISHIKTSRLD---YHCQNVDGG--GMSSQESTSEIN--IDKYKLDRTKTLTLC--KVINIPESVYMRGM-------  205 (263)
Q Consensus       143 -~~~l~~l~~~~~~---~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~-------  205 (263)
                       ...+.+-..+..+   +.|. .++-  ..........+.  ..|+.+++|+.++++  +++.+.+..|+...       
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~-~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCS-LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             chHHHHHHHhcccchhhhhhh-HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence             0001100000000   0000 0000  000000011111  125677777777777  66666554333222       


Q ss_pred             --------------CccceeEEEeccCCcccccCccccccccccccccccCCceEEe
Q psy3787         206 --------------SSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALT  248 (263)
Q Consensus       206 --------------~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~  248 (263)
                                    ++..|+. |+|.+|+|+.+-+.++.....+..+.+.+||+.+.
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~t-L~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKT-LSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             CcchHHHHHHHhhhcccccee-eeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence                          4457888 99999999988888888788888888889987654

>PLN03210 Resistant to P

Probab=99.52  E-value=1.1e-13  Score=135.32  Aligned_cols=127  Identities=21%  Similarity=0.195  Sum_probs=58.0

Q ss_pred             CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCC-CCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQ-LTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +|+.|+++++++..  ++. +..+++|+.++++++. +..+|.+..+++|+.|++++|......|..+..+++|+.|+++
T Consensus       612 ~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            34444444444433  333 4444455555554432 3344444444555555555443222222334455555555555


Q ss_pred             cC-cCccccccccCCCCcCEEEccCCc-CCCccccccCCCcccEEEecCCCCCCcch
Q psy3787          82 NN-KISEVSSNVGDLINLAILDLSDNE-LTDVPCELSSLFHLKSLFLGGNPIKTVRN  136 (263)
Q Consensus        82 ~~-~l~~lp~~~~~l~~L~~L~l~~n~-l~~l~~~~~~l~~L~~L~l~~n~l~~~~~  136 (263)
                      +| .++.+|..+ ++++|+.|++++|. +..+|..   ..+|+.|++++|.++.+|.
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~  742 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPS  742 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccc
Confidence            53 344444433 34455555555442 2233321   2345566666666665554

syringae 6; Provisional

>KOG0618|consensus

Probab=99.52  E-value=3.6e-15  Score=135.45  Aligned_cols=215  Identities=20%  Similarity=0.205  Sum_probs=149.0

Q ss_pred             CCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCC
Q psy3787          27 RSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDN  106 (263)
Q Consensus        27 ~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n  106 (263)
                      ++++.|+.++|.+.....-....++++++++++++..++ +++..+.+++.++..+|.++.+|..+....+|+.+.+..|
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n  297 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN  297 (1081)
T ss_pred             cchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh
Confidence            345555555555553222223468889999999999988 8889999999999999999999999888999999999999


Q ss_pred             cCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCC---------CCCcCCcccccc
Q psy3787         107 ELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGG---------MSSQESTSEINI  177 (263)
Q Consensus       107 ~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~  177 (263)
                      .+..+|....+.++|++|++..|.|..+|...+......+..+..+.+.+......+..         .+.........+
T Consensus       298 el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p  377 (1081)
T KOG0618|consen  298 ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP  377 (1081)
T ss_pred             hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh
Confidence            99999988899999999999999999999866665545555555544443111100000         000111344455


Q ss_pred             cccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEE
Q psy3787         178 DKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFAL  247 (263)
Q Consensus       178 ~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~  247 (263)
                      .+.++++|+.|+++  .++.+|+..+...   ..|+. |+||||+++.+|.. -.....+..+...+|....
T Consensus       378 ~l~~~~hLKVLhLsyNrL~~fpas~~~kl---e~Lee-L~LSGNkL~~Lp~t-va~~~~L~tL~ahsN~l~~  444 (1081)
T KOG0618|consen  378 VLVNFKHLKVLHLSYNRLNSFPASKLRKL---EELEE-LNLSGNKLTTLPDT-VANLGRLHTLRAHSNQLLS  444 (1081)
T ss_pred             hhccccceeeeeecccccccCCHHHHhch---HHhHH-HhcccchhhhhhHH-HHhhhhhHHHhhcCCceee
Confidence            56777888888888  7788887655443   37887 88888888888742 2223445555555555443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.50  E-value=9e-14  Score=128.38  Aligned_cols=193  Identities=23%  Similarity=0.238  Sum_probs=101.9

Q ss_pred             CCCCCEEEeecCccCCCCcccc-CC-----------------CCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCC
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLF-ID-----------------MRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINN   63 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~-~~-----------------l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~   63 (263)
                      +++|++|++++|+++.  +|.+ .+                 ...|+.|++++|.++.+|.  ..++|+.|++++|.+..
T Consensus       241 p~~Lk~LdLs~N~Lts--LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        241 PPELRTLEVSGNQLTS--LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS  316 (788)
T ss_pred             CCCCcEEEecCCccCc--ccCcccccceeeccCCchhhhhhchhhcCEEECcCCccccccc--cccccceeECCCCcccc
Confidence            4678888888888877  4431 10                 1245556666666666654  23678888999988887


Q ss_pred             CchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHH
Q psy3787          64 MENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSK  143 (263)
Q Consensus        64 ~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  143 (263)
                      ++..    ...|..|++++|.++.+|..   ..+|++|++++|.++.+|...   .+|+.|++++|.+..+|...     
T Consensus       317 Lp~l----p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~~LP~l~-----  381 (788)
T PRK15387        317 LPAL----PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPALP-----  381 (788)
T ss_pred             CCCC----cccccccccccCcccccccc---ccccceEecCCCccCCCCCCC---cccceehhhccccccCcccc-----
Confidence            6531    23466666777777666642   235666777777666665322   24444555555555544321     


Q ss_pred             HHhhhhhCCCCcccccc-----cCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEec
Q psy3787         144 RIISHIKTSRLDYHCQN-----VDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINI  216 (263)
Q Consensus       144 ~~l~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~l  216 (263)
                      ..|..|+++.+.+...-     +..-.++.. ....+|..   ...|+.|+++  +++.+|..+..+..    |+. |++
T Consensus       382 ~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~----L~~-LdL  452 (788)
T PRK15387        382 SGLKELIVSGNRLTSLPVLPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSS----ETT-VNL  452 (788)
T ss_pred             cccceEEecCCcccCCCCcccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccCcccccChHHhhccC----CCe-EEC
Confidence            12333333333320000     000000000 01222221   2355666666  66667766555443    776 777


Q ss_pred             cCCccc
Q psy3787         217 DKYKLD  222 (263)
Q Consensus       217 s~n~l~  222 (263)
                      ++|+++
T Consensus       453 s~N~Ls  458 (788)
T PRK15387        453 EGNPLS  458 (788)
T ss_pred             CCCCCC
Confidence            777766

>KOG4237|consensus

Probab=99.46  E-value=5e-15  Score=123.27  Aligned_cols=208  Identities=20%  Similarity=0.206  Sum_probs=138.9

Q ss_pred             CCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec-CcCcccccc-ccCCCCcCEEEc
Q psy3787          28 SLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN-NKISEVSSN-VGDLINLAILDL  103 (263)
Q Consensus        28 ~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-~~l~~lp~~-~~~l~~L~~L~l  103 (263)
                      ....++|..|+|+.+|  +|+.+++|+.||+++|.|+.+.+.+|+++..+..|.+.+ |+|+.+|.. +..+..++-|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            5677899999999888  488999999999999999999999999999887777766 899988875 678888888888


Q ss_pred             cCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCccccccccccc
Q psy3787         104 SDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKL  182 (263)
Q Consensus       104 ~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (263)
                      .-|.+.-+ ...+..++++..|.+-+|.+..+....+... ..++.+.+..+++.|.....+-.+-   ....+..+++.
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l-~~i~tlhlA~np~icdCnL~wla~~---~a~~~ietsga  223 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGL-AAIKTLHLAQNPFICDCNLPWLADD---LAMNPIETSGA  223 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccch-hccchHhhhcCccccccccchhhhH---Hhhchhhcccc
Confidence            88888855 4458888999999998988888776555443 3445555555555444221111000   01111111111


Q ss_pred             C----------------------Cccee---ccc--cc-cccChhHHhhcCCccceeEEEeccCCcccccCccccccccc
Q psy3787         183 D----------------------RTKTL---TLC--KV-INIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVIN  234 (263)
Q Consensus       183 ~----------------------~L~~L---~l~--~~-~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~  234 (263)
                      .                      .++.+   ..+  .+ ...|..-|   .++++|++ |++++|+|++|...++.+.-.
T Consensus       224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf---~~L~~L~~-lnlsnN~i~~i~~~aFe~~a~  299 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCF---KKLPNLRK-LNLSNNKITRIEDGAFEGAAE  299 (498)
T ss_pred             eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHH---hhcccceE-eccCCCccchhhhhhhcchhh
Confidence            1                      12222   111  22 23343333   34568999 999999999999887776555


Q ss_pred             cccccccCC
Q psy3787         235 IPESVYMNR  243 (263)
Q Consensus       235 l~~~~~~~~  243 (263)
                      +.++.+.+|
T Consensus       300 l~eL~L~~N  308 (498)
T KOG4237|consen  300 LQELYLTRN  308 (498)
T ss_pred             hhhhhcCcc
Confidence            555544444

>PLN03210 Resistant to P

Probab=99.43  E-value=1.7e-12  Score=126.91  Aligned_cols=121  Identities=25%  Similarity=0.285  Sum_probs=73.6

Q ss_pred             CCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCC-CCCCchhhhhCCCCccEEEeec
Q psy3787           5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNK-INNMENDYFLTLTKLSLLNLKN   82 (263)
Q Consensus         5 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~   82 (263)
                      |+.|++.++.+..  +|......+|+.|+++++.+..++ .+..+++|+.++++++. +..++ . ++.+++|+.|++.+
T Consensus       591 Lr~L~~~~~~l~~--lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~-ls~l~~Le~L~L~~  666 (1153)
T PLN03210        591 LRLLRWDKYPLRC--MPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-D-LSMATNLETLKLSD  666 (1153)
T ss_pred             cEEEEecCCCCCC--CCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-c-cccCCcccEEEecC
Confidence            4555555555444  444224566666777666666554 35566677777776654 33333 2 55666777777776


Q ss_pred             C-cCccccccccCCCCcCEEEccCC-cCCCccccccCCCcccEEEecCCC
Q psy3787          83 N-KISEVSSNVGDLINLAILDLSDN-ELTDVPCELSSLFHLKSLFLGGNP  130 (263)
Q Consensus        83 ~-~l~~lp~~~~~l~~L~~L~l~~n-~l~~l~~~~~~l~~L~~L~l~~n~  130 (263)
                      | .+..+|..+..+.+|+.|++++| .+..+|..+ .+++|+.|++++|.
T Consensus       667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence            5 45566777777777777777765 455666444 56677777777763

syringae 6; Provisional

>KOG0532|consensus

Probab=99.34  E-value=5.6e-14  Score=121.91  Aligned_cols=167  Identities=20%  Similarity=0.274  Sum_probs=115.9

Q ss_pred             EEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCC
Q psy3787          53 HLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIK  132 (263)
Q Consensus        53 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~  132 (263)
                      ..|+++|++.+++.. ++.+-.|+.+.+..|.++.+|..+.++..|..++++.|.++.+|..+..+ -|+.+.++.|+++
T Consensus        79 ~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~  156 (722)
T KOG0532|consen   79 FADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLT  156 (722)
T ss_pred             hhhccccccccCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccc
Confidence            456777777766654 45566677777777777777777777777777777777777777665555 4677777777777


Q ss_pred             CcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccce
Q psy3787         133 TVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQEC  210 (263)
Q Consensus       133 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L  210 (263)
                      .+|.++.  ....+.+++.+.+.                ...+|..++++.+|+.|.++  ++..+|+++. ...    |
T Consensus       157 ~lp~~ig--~~~tl~~ld~s~ne----------------i~slpsql~~l~slr~l~vrRn~l~~lp~El~-~Lp----L  213 (722)
T KOG0532|consen  157 SLPEEIG--LLPTLAHLDVSKNE----------------IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLP----L  213 (722)
T ss_pred             cCCcccc--cchhHHHhhhhhhh----------------hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCc----e
Confidence            7777766  23456666666666                45666677777777777777  7777777777 443    7


Q ss_pred             eEEEeccCCcccccCccccccccccccccccCCceE
Q psy3787         211 TIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFA  246 (263)
Q Consensus       211 ~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~  246 (263)
                      .. ||+|+|++..||. .++.+..+..+.+..||..
T Consensus       214 i~-lDfScNkis~iPv-~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  214 IR-LDFSCNKISYLPV-DFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ee-eecccCceeecch-hhhhhhhheeeeeccCCCC
Confidence            77 8888888887776 4556667777777777743

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.34  E-value=8.7e-13  Score=101.15  Aligned_cols=130  Identities=32%  Similarity=0.381  Sum_probs=45.9

Q ss_pred             ccccCCCCCCcEEEecCCCCCCCcCCC-CCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccc-cCCCC
Q psy3787          20 LPLFIDMRSLTELNLSYNQLTMLPVCT-DCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLIN   97 (263)
Q Consensus        20 ~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~   97 (263)
                      .+.+.+..+++.|++++|.|+.+..+. .+.+|+.|++++|.+..+..  +..+++|++|++++|+++.++..+ ..+++
T Consensus        12 ~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~   89 (175)
T PF14580_consen   12 IAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPN   89 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT
T ss_pred             ccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCc
Confidence            444666667888888888888777665 46788888888888887754  667888888888888888776544 35778


Q ss_pred             cCEEEccCCcCCCcc--ccccCCCcccEEEecCCCCCCcchHHHHhH--HHHhhhhhC
Q psy3787          98 LAILDLSDNELTDVP--CELSSLFHLKSLFLGGNPIKTVRNDILQDS--KRIISHIKT  151 (263)
Q Consensus        98 L~~L~l~~n~l~~l~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~~~l~~l~~  151 (263)
                      |++|++++|.|..+.  ..++.+++|+.|++.+|++...+.......  .+.+..||.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            888888888887653  246778888888888888876543322221  344455544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.33  E-value=1.1e-12  Score=100.59  Aligned_cols=122  Identities=29%  Similarity=0.323  Sum_probs=53.9

Q ss_pred             CCCCEEEeecCccCCCCccccC-CCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      ..+++|++++|.+..  +..+. .+.+|+.|++++|.++.++.+..++.|+.|++++|.++++.......+++|++|+++
T Consensus        19 ~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~   96 (175)
T PF14580_consen   19 VKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS   96 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred             ccccccccccccccc--ccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence            357889999999887  66665 578999999999999999988889999999999999998865433468999999999


Q ss_pred             cCcCccccc--cccCCCCcCEEEccCCcCCCcc----ccccCCCcccEEEe
Q psy3787          82 NNKISEVSS--NVGDLINLAILDLSDNELTDVP----CELSSLFHLKSLFL  126 (263)
Q Consensus        82 ~~~l~~lp~--~~~~l~~L~~L~l~~n~l~~l~----~~~~~l~~L~~L~l  126 (263)
                      +|++..+.+  .+..+++|+.|++.+|++..-+    ..+..+|+|+.||-
T Consensus        97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            999986643  4678899999999999988543    23678888998864

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.31  E-value=4.6e-13  Score=113.50  Aligned_cols=208  Identities=21%  Similarity=0.194  Sum_probs=109.9

Q ss_pred             CCCCEEEeecCccCCCC---ccc-cCCCCCCcEEEecCCCCCCCc--------CCCCCCCCcEEEecCCCCCCCchhhhh
Q psy3787           3 SHLKTLDLSHNKLVSDS---LPL-FIDMRSLTELNLSYNQLTMLP--------VCTDCKNLTHLLLGFNKINNMENDYFL   70 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~---~~~-~~~l~~L~~L~l~~n~l~~l~--------~~~~~~~L~~L~l~~n~~~~~~~~~~~   70 (263)
                      .+|++++++++.++...   ++. +...+.++.++++++.+...+        .+..+++|+.|++++|.+....+..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            45677777777764421   222 555666777777777665211        244566777777777776644444444


Q ss_pred             CCCC---ccEEEeecCcCcc-----ccccccCC-CCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCCcch
Q psy3787          71 TLTK---LSLLNLKNNKISE-----VSSNVGDL-INLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKTVRN  136 (263)
Q Consensus        71 ~l~~---L~~L~l~~~~l~~-----lp~~~~~l-~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~  136 (263)
                      .+.+   |++|++++|+++.     +...+..+ .+|+.+++++|.++.     ++..+..+..|+.+++++|.++.-..
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  182 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI  182 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence            4444   7777777776651     22334444 677777777777662     33345566677777777776664211


Q ss_pred             HH-HHhH--HHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--ccccc-ChhHHhhc-CCccc
Q psy3787         137 DI-LQDS--KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINI-PESVYMRG-MSSQE  209 (263)
Q Consensus       137 ~~-~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l-~~~~~~~~-~~~~~  209 (263)
                      .. ....  ...++.++++.+.+     .+.+      ...+...+..+++|++|+++  .++.. ...+.... ...+.
T Consensus       183 ~~l~~~l~~~~~L~~L~L~~n~i-----~~~~------~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~  251 (319)
T cd00116         183 RALAEGLKANCNLEVLDLNNNGL-----TDEG------ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS  251 (319)
T ss_pred             HHHHHHHHhCCCCCEEeccCCcc-----ChHH------HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCC
Confidence            11 1111  12445555544432     0000      12223334556677777777  44321 11111111 01235


Q ss_pred             eeEEEeccCCccc
Q psy3787         210 CTIEINIDKYKLD  222 (263)
Q Consensus       210 L~~~L~ls~n~l~  222 (263)
                      |+. |++++|.++
T Consensus       252 L~~-L~l~~n~i~  263 (319)
T cd00116         252 LLT-LSLSCNDIT  263 (319)
T ss_pred             ceE-EEccCCCCC
Confidence            776 777777664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.30  E-value=1.2e-12  Score=110.90  Aligned_cols=211  Identities=19%  Similarity=0.168  Sum_probs=126.3

Q ss_pred             CCCCEEEeecCccCC--CC---ccc-cCCCCCCcEEEecCCCCCCC-c-CCCCC---CCCcEEEecCCCCCCCc----hh
Q psy3787           3 SHLKTLDLSHNKLVS--DS---LPL-FIDMRSLTELNLSYNQLTML-P-VCTDC---KNLTHLLLGFNKINNME----ND   67 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~--~~---~~~-~~~l~~L~~L~l~~n~l~~l-~-~~~~~---~~L~~L~l~~n~~~~~~----~~   67 (263)
                      ++++.++++++.+..  ..   ++. +..+++|+.|++++|.+... + .+..+   ++|++|++++|++....    ..
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            457888888877652  11   112 66788889999988888632 1 22222   45888888888876321    22


Q ss_pred             hhhCC-CCccEEEeecCcCc-----cccccccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCCcch
Q psy3787          68 YFLTL-TKLSLLNLKNNKIS-----EVSSNVGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKTVRN  136 (263)
Q Consensus        68 ~~~~l-~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~  136 (263)
                      .+..+ ++|+.+++++|.++     .++..+..+..|+++++++|.++.     ++..+..+++|+.|++++|.+.....
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  210 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA  210 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence            34555 78888999888877     334455667788888888888772     33345666788888888888776443


Q ss_pred             HHHHhH---HHHhhhhhCCCCcccccccCCCCCCCcCCcccccccc-cccCCcceeccc--ccccc-ChhHHhhcCCccc
Q psy3787         137 DILQDS---KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK-YKLDRTKTLTLC--KVINI-PESVYMRGMSSQE  209 (263)
Q Consensus       137 ~~~~~~---~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~--~~~~l-~~~~~~~~~~~~~  209 (263)
                      ..+...   .+.+++++++++.+.     +.+      ...+...+ ...+.|++|+++  .++.. ...+......+++
T Consensus       211 ~~l~~~~~~~~~L~~L~ls~n~l~-----~~~------~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~  279 (319)
T cd00116         211 SALAETLASLKSLEVLNLGDNNLT-----DAG------AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES  279 (319)
T ss_pred             HHHHHHhcccCCCCEEecCCCcCc-----hHH------HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence            322221   334666666655520     000      00111111 124788888888  55411 1122222222346


Q ss_pred             eeEEEeccCCcccccC
Q psy3787         210 CTIEINIDKYKLDRTK  225 (263)
Q Consensus       210 L~~~L~ls~n~l~~ip  225 (263)
                      |+. +++++|.++.-+
T Consensus       280 L~~-l~l~~N~l~~~~  294 (319)
T cd00116         280 LLE-LDLRGNKFGEEG  294 (319)
T ss_pred             ccE-EECCCCCCcHHH
Confidence            888 999988887443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532|consensus

Probab=99.24  E-value=7.8e-13  Score=114.96  Aligned_cols=173  Identities=26%  Similarity=0.360  Sum_probs=113.8

Q ss_pred             CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC
Q psy3787           6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN   83 (263)
Q Consensus         6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~   83 (263)
                      ...+++.|++..  +|. ++.+-.|+.+.+..|.+..+| .+..+..|++++++.|++...+.. ++.++ |+.+.+++|
T Consensus        78 ~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFSE--LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhcccccccc--CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcCc-ceeEEEecC
Confidence            445677777666  555 666666777777777777666 366677777777777777776655 34444 777777777


Q ss_pred             cCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCC
Q psy3787          84 KISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDG  163 (263)
Q Consensus        84 ~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  163 (263)
                      +++.+|..++....|.+++.+.|.+.++|..++.+.+|+.+.++.|++..+|++.....   |..||.+.+.        
T Consensus       154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp---Li~lDfScNk--------  222 (722)
T KOG0532|consen  154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP---LIRLDFSCNK--------  222 (722)
T ss_pred             ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc---eeeeecccCc--------
Confidence            77777777777777777777777777777777777777777777777777777655332   3344444444        


Q ss_pred             CCCCCcCCcccccccccccCCcceeccc--cccccChhHH
Q psy3787         164 GGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVY  201 (263)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~  201 (263)
                              ...+|-.|..|+.|++|-|.  .+..=|..+.
T Consensus       223 --------is~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC  254 (722)
T KOG0532|consen  223 --------ISYLPVDFRKMRHLQVLQLENNPLQSPPAQIC  254 (722)
T ss_pred             --------eeecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence                    34555566666666666666  4444444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.22  E-value=1.1e-11  Score=108.22  Aligned_cols=193  Identities=26%  Similarity=0.341  Sum_probs=114.3

Q ss_pred             EEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCC--CCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcC
Q psy3787           8 LDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCK--NLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKI   85 (263)
Q Consensus         8 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l   85 (263)
                      +++..+.+.. ....+..++.++.+++.+|.++.++......  +|+.|++++|.+..++.. +..+++|+.|+++.|++
T Consensus        98 l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          98 LDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eecccccccc-CchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchh
Confidence            4555555422 1333555566777777777777666533332  677777777777665422 55667777777777777


Q ss_pred             ccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCC
Q psy3787          86 SEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGG  165 (263)
Q Consensus        86 ~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  165 (263)
                      +.+|...+....|+.+++++|.+..+|...+....|+.+.++.|++...+..+....  .+..+.+..+.          
T Consensus       176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~--~l~~l~l~~n~----------  243 (394)
T COG4886         176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLK--NLSGLELSNNK----------  243 (394)
T ss_pred             hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcc--cccccccCCce----------
Confidence            777666556666777777777777776555555567777777775444333322222  22222222222          


Q ss_pred             CCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787         166 MSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT  226 (263)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~  226 (263)
                            ....+..+..++.++.|+++  .+..++. +....    .++. +++++|.+..+++
T Consensus       244 ------~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~----~l~~-L~~s~n~~~~~~~  294 (394)
T COG4886         244 ------LEDLPESIGNLSNLETLDLSNNQISSISS-LGSLT----NLRE-LDLSGNSLSNALP  294 (394)
T ss_pred             ------eeeccchhccccccceecccccccccccc-ccccC----ccCE-EeccCccccccch
Confidence                  22224456777778888888  6677765 33333    4887 8888887764433

>KOG1259|consensus

Probab=99.15  E-value=4.1e-12  Score=102.93  Aligned_cols=131  Identities=28%  Similarity=0.340  Sum_probs=105.3

Q ss_pred             CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787           4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN   82 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~   82 (263)
                      .|+++|+++|.++.  +.. +.-.|.++.|++++|.+..+..+..+++|+.||+++|.+.++.. +--.+.++++|.+++
T Consensus       285 ~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  285 ELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhccccccchhh--hhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHhhhcCEeeeehhh
Confidence            47788999998877  555 66778999999999998888888888899999999998876543 234577889999999


Q ss_pred             CcCccccccccCCCCcCEEEccCCcCCCcc--ccccCCCcccEEEecCCCCCCcchHH
Q psy3787          83 NKISEVSSNVGDLINLAILDLSDNELTDVP--CELSSLFHLKSLFLGGNPIKTVRNDI  138 (263)
Q Consensus        83 ~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~--~~~~~l~~L~~L~l~~n~l~~~~~~~  138 (263)
                      |.+..+.. ++.+.+|..||+++|+|..+.  ..+++++.|+++.+.+|++..++...
T Consensus       362 N~iE~LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYR  418 (490)
T KOG1259|consen  362 NKIETLSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYR  418 (490)
T ss_pred             hhHhhhhh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHH
Confidence            98887754 567788899999999988663  34889999999999999998877543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.13  E-value=7.4e-11  Score=103.13  Aligned_cols=190  Identities=27%  Similarity=0.327  Sum_probs=148.3

Q ss_pred             EEEecCCCC-CCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCC-CccEEEeecCcCccccccccCCCCcCEEEccCCcC
Q psy3787          31 ELNLSYNQL-TMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLT-KLSLLNLKNNKISEVSSNVGDLINLAILDLSDNEL  108 (263)
Q Consensus        31 ~L~l~~n~l-~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l  108 (263)
                      .++...+.+ .....+.....++.+++.++.+..+++. ..... +|+.+++++|.++.+|..+..++.|+.|+++.|.+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence            577777777 3344455567899999999999988774 33443 89999999999999998889999999999999999


Q ss_pred             CCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCccee
Q psy3787         109 TDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTL  188 (263)
Q Consensus       109 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  188 (263)
                      ..+|...+..+.|+.+++++|.+..+|..+...  ..+..+.++.+.                ....+..+..++.+..+
T Consensus       176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~--~~L~~l~~~~N~----------------~~~~~~~~~~~~~l~~l  237 (394)
T COG4886         176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELL--SALEELDLSNNS----------------IIELLSSLSNLKNLSGL  237 (394)
T ss_pred             hhhhhhhhhhhhhhheeccCCccccCchhhhhh--hhhhhhhhcCCc----------------ceecchhhhhccccccc
Confidence            999877778999999999999999999875222  245666666664                33455567888888888


Q ss_pred             ccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceE
Q psy3787         189 TLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFA  246 (263)
Q Consensus       189 ~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~  246 (263)
                      ++.  .+..++..+.....    ++. |++++|.++.++.  .....++..+.+.+|...
T Consensus       238 ~l~~n~~~~~~~~~~~l~~----l~~-L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         238 ELSNNKLEDLPESIGNLSN----LET-LDLSNNQISSISS--LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             ccCCceeeeccchhccccc----cce-ecccccccccccc--ccccCccCEEeccCcccc
Confidence            877  66666666665554    999 9999999999987  334577778888887643

>KOG1259|consensus

Probab=98.89  E-value=2.1e-10  Score=93.13  Aligned_cols=105  Identities=31%  Similarity=0.429  Sum_probs=55.6

Q ss_pred             CCCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccC
Q psy3787          27 RSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSD  105 (263)
Q Consensus        27 ~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~  105 (263)
                      ..|+.+|+++|.|+.+.. ..-.+.++.|++++|.+..+..  ++.+.+|..|++++|.++++..+-..+.+.+.|.++.
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence            345555555555554442 3334555555555555555443  4445555555555555555555444455555555555


Q ss_pred             CcCCCccccccCCCcccEEEecCCCCCCc
Q psy3787         106 NELTDVPCELSSLFHLKSLFLGGNPIKTV  134 (263)
Q Consensus       106 n~l~~l~~~~~~l~~L~~L~l~~n~l~~~  134 (263)
                      |.+.++. .++.+++|..|++++|+|..+
T Consensus       362 N~iE~LS-GL~KLYSLvnLDl~~N~Ie~l  389 (490)
T KOG1259|consen  362 NKIETLS-GLRKLYSLVNLDLSSNQIEEL  389 (490)
T ss_pred             hhHhhhh-hhHhhhhheeccccccchhhH
Confidence            5555443 345555555555555555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=2.2e-09  Score=67.95  Aligned_cols=57  Identities=37%  Similarity=0.526  Sum_probs=24.8

Q ss_pred             CCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCc
Q psy3787          28 SLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK   84 (263)
Q Consensus        28 ~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~   84 (263)
                      +|++|++++|.++.+|  .|..+++|++|++++|.+..+++.+|.++++|+++++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            3444444444444333  23444444444444444444444444444444444444443

...

>KOG0531|consensus

Probab=98.83  E-value=8e-10  Score=97.22  Aligned_cols=193  Identities=28%  Similarity=0.366  Sum_probs=132.4

Q ss_pred             CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      ..+..+++..|.+..  .-. +..+.+|..+++..|.|..+.. +..+++|++|++++|.|+.+.+  +..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhh--hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence            345556677777665  333 7888999999999999998888 8889999999999999998876  667888999999


Q ss_pred             ecCcCccccccccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccc
Q psy3787          81 KNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQ  159 (263)
Q Consensus        81 ~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~  159 (263)
                      .+|.++.+... ..+..|+.+++++|.+..+... ...+..++.+.+.+|.+..+........   +..+++..+.+.  
T Consensus       148 ~~N~i~~~~~~-~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~---l~~~~l~~n~i~--  221 (414)
T KOG0531|consen  148 SGNLISDISGL-ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKK---LVLLSLLDNKIS--  221 (414)
T ss_pred             ccCcchhccCC-ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHH---HHHhhcccccce--
Confidence            99999988664 3488899999999999877643 5778889999999998887654322222   111222222210  


Q ss_pred             ccCCCCCCCcCCcccccccccccC--Ccceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccC
Q psy3787         160 NVDGGGMSSQESTSEINIDKYKLD--RTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTK  225 (263)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip  225 (263)
                                     ....+..+.  .|+.+++.  .+..++..+....    .+.. ++++.|++..+.
T Consensus       222 ---------------~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~----~l~~-l~~~~n~~~~~~  271 (414)
T KOG0531|consen  222 ---------------KLEGLNELVMLHLRELYLSGNRISRSPEGLENLK----NLPV-LDLSSNRISNLE  271 (414)
T ss_pred             ---------------eccCcccchhHHHHHHhcccCccccccccccccc----cccc-cchhhccccccc
Confidence                           000111122  37777777  5555543333333    4777 888877766433

>KOG3207|consensus

Probab=98.80  E-value=2e-09  Score=91.30  Aligned_cols=206  Identities=19%  Similarity=0.178  Sum_probs=126.7

Q ss_pred             cCCCCCCcEEEecCCCCCCCc---CCCCCCCCcEEEecCCCCCCC--chhhhhCCCCccEEEeecCcCcccccc--ccCC
Q psy3787          23 FIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGFNKINNM--ENDYFLTLTKLSLLNLKNNKISEVSSN--VGDL   95 (263)
Q Consensus        23 ~~~l~~L~~L~l~~n~l~~l~---~~~~~~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~~~l~~lp~~--~~~l   95 (263)
                      =+++.+|+.+.++++.+...+   ....+++++.||+++|-+...  .......+++|+.|+++.|++...-++  -..+
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            446778888888888887655   356678888888888866532  223356788888889988888744322  2356


Q ss_pred             CCcCEEEccCCcCC--CccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcc
Q psy3787          96 INLAILDLSDNELT--DVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTS  173 (263)
Q Consensus        96 ~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  173 (263)
                      ..++.|.++.|.++  .+......+++|+.|++.+|..-.+- .........+..|+++++.+    +          ..
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdLs~N~l----i----------~~  261 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-ATSTKILQTLQELDLSNNNL----I----------DF  261 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee-cchhhhhhHHhhccccCCcc----c----------cc
Confidence            77888888888887  34444667888888888888411111 00111145667777777663    0          01


Q ss_pred             cccccccccCCcceeccc--ccccc--Ch-hHHhhcCCccceeEEEeccCCcccccCccccc-cccccccccccCCc
Q psy3787         174 EINIDKYKLDRTKTLTLC--KVINI--PE-SVYMRGMSSQECTIEINIDKYKLDRTKTLTLC-KVINIPESVYMNRP  244 (263)
Q Consensus       174 ~~~~~~~~~~~L~~L~l~--~~~~l--~~-~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~-~~~~l~~~~~~~~~  244 (263)
                      .....+..++.|+.|.++  .+.++  |+ +...-.....+|+. |+++.|+|...+..... ...++..+.+.+|+
T Consensus       262 ~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~-L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  262 DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY-LNISENNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             ccccccccccchhhhhccccCcchhcCCCccchhhhccccccee-eecccCccccccccchhhccchhhhhhccccc
Confidence            111335667788888887  55433  22 12222222346888 99999988766653322 23344455555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=6.4e-09  Score=65.79  Aligned_cols=58  Identities=38%  Similarity=0.554  Sum_probs=30.0

Q ss_pred             CCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccc-cccCCCCcCEEEccCCc
Q psy3787          50 NLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSS-NVGDLINLAILDLSDNE  107 (263)
Q Consensus        50 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~n~  107 (263)
                      +|++|++++|.+..+++.+|.++++|+++++++|+++.++. .+..+++|+++++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555555555555555555555555555555554432 34455555555555543

...

>KOG1909|consensus

Probab=98.77  E-value=3.9e-09  Score=87.23  Aligned_cols=116  Identities=19%  Similarity=0.220  Sum_probs=67.7

Q ss_pred             cCCCCCCcEEEecCCCCC--CCcC----CCCCCCCcEEEecCCCCCCCchhhh-------------hCCCCccEEEeecC
Q psy3787          23 FIDMRSLTELNLSYNQLT--MLPV----CTDCKNLTHLLLGFNKINNMENDYF-------------LTLTKLSLLNLKNN   83 (263)
Q Consensus        23 ~~~l~~L~~L~l~~n~l~--~l~~----~~~~~~L~~L~l~~n~~~~~~~~~~-------------~~l~~L~~L~l~~~   83 (263)
                      +.++++|++++||.|-+.  .++.    +.++..|++|.+.+|.+.......+             ..-++|+.+...+|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            445667777777777665  2331    3456677777777776653322221             22346777777777


Q ss_pred             cCcc-----ccccccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCCcchHH
Q psy3787          84 KISE-----VSSNVGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKTVRNDI  138 (263)
Q Consensus        84 ~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~  138 (263)
                      ++..     +...+...+.|+.+.+..|.|..     +...+..+++|+.|++++|.++.-....
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~  232 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA  232 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence            6652     23345555667777777776652     1234667777777777777666544333

>KOG3207|consensus

Probab=98.74  E-value=1.2e-09  Score=92.64  Aligned_cols=209  Identities=16%  Similarity=0.139  Sum_probs=130.0

Q ss_pred             CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC----CCCCCCCcEEEecCCCCCCCchhh-hhCCCCc
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV----CTDCKNLTHLLLGFNKINNMENDY-FLTLTKL   75 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~----~~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L   75 (263)
                      ++.|+.+.+.+..+....... ...+++++.||++.|-+..+..    ...+++|+.|+++.|.+.....+. -..++++
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            456778888887766522212 6778999999999998774431    356789999999999876433221 1246788


Q ss_pred             cEEEeecCcCc--cccccccCCCCcCEEEccCCc-CCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCC
Q psy3787          76 SLLNLKNNKIS--EVSSNVGDLINLAILDLSDNE-LTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTS  152 (263)
Q Consensus        76 ~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~n~-l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~  152 (263)
                      +.|.++.|+++  .+..-...+++++.|++..|. +........-+..|+.|++++|.+-..+........+.+..+.++
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence            99999999888  333334567888999998884 332222345566788999999988777644433334455555554


Q ss_pred             CCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787         153 RLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD  222 (263)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~  222 (263)
                      ...+..-..-         ..++-.....+++|++|+++  ++...+. +..... +.+|+. +.+..|++.
T Consensus       280 ~tgi~si~~~---------d~~s~~kt~~f~kL~~L~i~~N~I~~w~s-l~~l~~-l~nlk~-l~~~~n~ln  339 (505)
T KOG3207|consen  280 STGIASIAEP---------DVESLDKTHTFPKLEYLNISENNIRDWRS-LNHLRT-LENLKH-LRITLNYLN  339 (505)
T ss_pred             ccCcchhcCC---------CccchhhhcccccceeeecccCccccccc-cchhhc-cchhhh-hhccccccc
Confidence            4332100000         01111113456899999999  6644442 112221 345787 777777765

>KOG0531|consensus

Probab=98.69  E-value=3.5e-09  Score=93.13  Aligned_cols=128  Identities=31%  Similarity=0.433  Sum_probs=103.5

Q ss_pred             CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      +++++.+++.+|.+..  +.. +..+++|++|++++|.|+.+..+..+..|+.|++++|.+..+..  +..+..++.+++
T Consensus        94 ~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l  169 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG--LESLKSLKLLDL  169 (414)
T ss_pred             ccceeeeeccccchhh--cccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC--CccchhhhcccC
Confidence            5678899999999988  777 88899999999999999999888888889999999999988755  556889999999


Q ss_pred             ecCcCcccccc-ccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCc
Q psy3787          81 KNNKISEVSSN-VGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTV  134 (263)
Q Consensus        81 ~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~  134 (263)
                      ++|.++.+... ...+..++.+.+.+|.+..+. .+..+..+..+++..|.++.+
T Consensus       170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~  223 (414)
T KOG0531|consen  170 SYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKL  223 (414)
T ss_pred             CcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceec
Confidence            99999987663 467788888999999887553 233444455557777776664

>KOG4579|consensus

Probab=98.66  E-value=2.1e-09  Score=77.68  Aligned_cols=125  Identities=24%  Similarity=0.306  Sum_probs=103.7

Q ss_pred             CCCcEEEecCCCCCCCc----CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEE
Q psy3787          27 RSLTELNLSYNQLTMLP----VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILD  102 (263)
Q Consensus        27 ~~L~~L~l~~n~l~~l~----~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~  102 (263)
                      ..+-.+++++|++-.++    .+.....|+.+++++|.+..+++..-...+.++++++++|.++.+|..+..++.|+.++
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence            34667888888877555    25566788889999999999988866677789999999999999999999999999999


Q ss_pred             ccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhC
Q psy3787         103 LSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKT  151 (263)
Q Consensus       103 l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~  151 (263)
                      ++.|.+...|..+..+.++..|+..+|.+..++-+.+.....-+..+.+
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgn  155 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGN  155 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcC
Confidence            9999999888888889999999999999999998866555444444433

>PLN03150 hypothetical protein; Provisional

Probab=98.61  E-value=1.1e-07  Score=87.73  Aligned_cols=90  Identities=27%  Similarity=0.389  Sum_probs=77.6

Q ss_pred             CCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCc-cccccccCCCCcCEEEccCCcCC-CccccccCCCcccEEEec
Q psy3787          50 NLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHLKSLFLG  127 (263)
Q Consensus        50 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~  127 (263)
                      .++.|++++|.+.+..+..+..+++|+.|++++|.++ .+|..++.+++|+.|++++|.++ .+|..++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3677899999988777777889999999999999988 78888899999999999999988 578889999999999999


Q ss_pred             CCCCCC-cchHHH
Q psy3787         128 GNPIKT-VRNDIL  139 (263)
Q Consensus       128 ~n~l~~-~~~~~~  139 (263)
                      +|.+++ +|..+.
T Consensus       499 ~N~l~g~iP~~l~  511 (623)
T PLN03150        499 GNSLSGRVPAALG  511 (623)
T ss_pred             CCcccccCChHHh
Confidence            999887 676544

>KOG1859|consensus

Probab=98.58  E-value=4.4e-10  Score=100.76  Aligned_cols=128  Identities=34%  Similarity=0.386  Sum_probs=97.1

Q ss_pred             CCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC
Q psy3787           5 LKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN   83 (263)
Q Consensus         5 L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~   83 (263)
                      |...++++|.+..  +.. +.-++.++.|+|++|+++.+..+..+++|++||+++|.+..++.-...++ +|..|.+++|
T Consensus       166 L~~a~fsyN~L~~--mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN  242 (1096)
T KOG1859|consen  166 LATASFSYNRLVL--MDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN  242 (1096)
T ss_pred             HhhhhcchhhHHh--HHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeeccc
Confidence            4566777887776  544 77788899999999998888878888889999999998887765433333 3888899998


Q ss_pred             cCccccccccCCCCcCEEEccCCcCCCccc--cccCCCcccEEEecCCCCCCcch
Q psy3787          84 KISEVSSNVGDLINLAILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPIKTVRN  136 (263)
Q Consensus        84 ~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~~~  136 (263)
                      .++++-+ +.++.+|+.||+++|-+.....  .++.+..|+.|.+.||++.--|-
T Consensus       243 ~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~  296 (1096)
T KOG1859|consen  243 ALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW  296 (1096)
T ss_pred             HHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence            8887644 5678888889999987775432  25677788888999998876553

>PLN03150 hypothetical protein; Provisional

Probab=98.54  E-value=1.6e-07  Score=86.70  Aligned_cols=103  Identities=26%  Similarity=0.398  Sum_probs=82.3

Q ss_pred             CCcEEEecCCCCC-CCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCc-cccccccCCCCcCEEEcc
Q psy3787          28 SLTELNLSYNQLT-MLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLS  104 (263)
Q Consensus        28 ~L~~L~l~~n~l~-~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~  104 (263)
                      .++.|+|++|.+. .+| .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++ .+|..++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3778888888887 344 4778889999999999888766666888899999999999888 778888889999999999


Q ss_pred             CCcCC-CccccccCC-CcccEEEecCCC
Q psy3787         105 DNELT-DVPCELSSL-FHLKSLFLGGNP  130 (263)
Q Consensus       105 ~n~l~-~l~~~~~~l-~~L~~L~l~~n~  130 (263)
                      +|.++ .+|..++.. .++..+++.+|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            99887 577766543 356677777774

>KOG1909|consensus

Probab=98.52  E-value=3.4e-08  Score=81.78  Aligned_cols=232  Identities=16%  Similarity=0.157  Sum_probs=146.4

Q ss_pred             CCCCCEEEeecCccCCCCccc----cCCCCCCcEEEecCCCCC----CCc--------CCCCCCCCcEEEecCCCCCCCc
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL----FIDMRSLTELNLSYNQLT----MLP--------VCTDCKNLTHLLLGFNKINNME   65 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~l~----~l~--------~~~~~~~L~~L~l~~n~~~~~~   65 (263)
                      +..++.+++++|-+.......    +...+.|+..+++.--..    .+|        .+..+++|+.+++|+|.+..-.
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            356788999999887633222    777888999888875322    233        3456779999999999877322


Q ss_pred             ----hhhhhCCCCccEEEeecCcCcccc--------------ccccCCCCcCEEEccCCcCCCc-----cccccCCCccc
Q psy3787          66 ----NDYFLTLTKLSLLNLKNNKISEVS--------------SNVGDLINLAILDLSDNELTDV-----PCELSSLFHLK  122 (263)
Q Consensus        66 ----~~~~~~l~~L~~L~l~~~~l~~lp--------------~~~~~l~~L~~L~l~~n~l~~l-----~~~~~~l~~L~  122 (263)
                          ...++.+..|++|.+.+|.+....              .....-+.|+++...+|++..-     ...+...+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence                233456788999999999887321              1235667899999999988753     33467788999


Q ss_pred             EEEecCCCCCCcchHHHHhH---HHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--ccc-cc
Q psy3787         123 SLFLGGNPIKTVRNDILQDS---KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVI-NI  196 (263)
Q Consensus       123 ~L~l~~n~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~-~l  196 (263)
                      .+.+..|.|..-........   .+.++.|++.++.+.     ..+      ...+...++.++.|++++++  .+. .-
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft-----~eg------s~~LakaL~s~~~L~El~l~dcll~~~G  257 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT-----LEG------SVALAKALSSWPHLRELNLGDCLLENEG  257 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhh-----hHH------HHHHHHHhcccchheeeccccccccccc
Confidence            99999987765332222222   455666666666541     011      22344557778899999988  443 22


Q ss_pred             ChhHHhh-cCCccceeEEEeccCCcccc--cCcccc--ccccccccccccCCce
Q psy3787         197 PESVYMR-GMSSQECTIEINIDKYKLDR--TKTLTL--CKVINIPESVYMNRPF  245 (263)
Q Consensus       197 ~~~~~~~-~~~~~~L~~~L~ls~n~l~~--ip~~~~--~~~~~l~~~~~~~~~~  245 (263)
                      ...+... ..+.+.|+. +.+.+|.|+.  .-...-  ...+.+..+.++||..
T Consensus       258 a~a~~~al~~~~p~L~v-l~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  258 AIAFVDALKESAPSLEV-LELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHHhccCCCCce-eccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            2222222 222347998 9999998873  111111  1235556666777764

>KOG1644|consensus

Probab=98.45  E-value=5.5e-07  Score=69.40  Aligned_cols=121  Identities=26%  Similarity=0.281  Sum_probs=94.0

Q ss_pred             CEEEeecCccCCCCccccCC-CCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCc
Q psy3787           6 KTLDLSHNKLVSDSLPLFID-MRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK   84 (263)
Q Consensus         6 ~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~   84 (263)
                      +++++.+.++..  +..++. ..+...+|+++|.+..++.|..++.|.+|.+++|+|+.+.+..-.-++++..|.+++|+
T Consensus        22 ~e~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   22 RELDLRGLKIPV--IENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             cccccccccccc--hhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            445666665444  222222 34677899999999988889999999999999999999888766667889999999999


Q ss_pred             Cccccc--cccCCCCcCEEEccCCcCCCccc----cccCCCcccEEEecC
Q psy3787          85 ISEVSS--NVGDLINLAILDLSDNELTDVPC----ELSSLFHLKSLFLGG  128 (263)
Q Consensus        85 l~~lp~--~~~~l~~L~~L~l~~n~l~~l~~----~~~~l~~L~~L~l~~  128 (263)
                      +.++.+  -+..++.|++|.+-+|.+..-+.    .+..+++|+.||+++
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            987643  35678899999999998875432    377899999998765

>KOG1859|consensus

Probab=98.42  E-value=1.2e-08  Score=91.86  Aligned_cols=129  Identities=23%  Similarity=0.202  Sum_probs=102.0

Q ss_pred             CCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCC
Q psy3787          28 SLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDN  106 (263)
Q Consensus        28 ~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n  106 (263)
                      .|.+.++++|.+..+. ++.-++.+++|++++|+++.+.  ++..+++|++||++.|.++.+|..-..-..|+.|.+++|
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN  242 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN  242 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence            4666777777777555 3566788999999999999886  588999999999999999999875333334999999999


Q ss_pred             cCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccc
Q psy3787         107 ELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQ  159 (263)
Q Consensus       107 ~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~  159 (263)
                      .++++- .+.++.+|+.||+++|-|.+...-.+--....|..|.+.++++.|.
T Consensus       243 ~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  243 ALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             HHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            998875 5788999999999999888765332222367788888888888665

>KOG4658|consensus

Probab=98.34  E-value=4.6e-07  Score=86.04  Aligned_cols=122  Identities=25%  Similarity=0.215  Sum_probs=62.3

Q ss_pred             CEEEeecCccCCCCccccCCCCCCcEEEecCCC--CCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQ--LTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         6 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~--l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +...+.+|.+..  ++.-..++.|+.|-+..|.  +..++.  |..++.|+.||+++|.-....|..++.+-+|++|+++
T Consensus       526 rr~s~~~~~~~~--~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~  603 (889)
T KOG4658|consen  526 RRMSLMNNKIEH--IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS  603 (889)
T ss_pred             eEEEEeccchhh--ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence            444444554443  3333334455555555554  333332  5555666666666554333333445556666666666


Q ss_pred             cCcCccccccccCCCCcCEEEccCCcCC-CccccccCCCcccEEEecCC
Q psy3787          82 NNKISEVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHLKSLFLGGN  129 (263)
Q Consensus        82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n  129 (263)
                      ++.++.+|..+.++..|.+|++..+.-. .+|.....+.+|++|.+...
T Consensus       604 ~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  604 DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             CCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            6666666666666666666665554322 33333444556665555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.29  E-value=9.5e-07  Score=51.61  Aligned_cols=40  Identities=35%  Similarity=0.570  Sum_probs=24.7

Q ss_pred             CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC
Q psy3787           3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV   44 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~   44 (263)
                      ++|++|++++|+++.  +|+ ++++++|+.|++++|+++.++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCcC
Confidence            356667777776665  666 6667777777777666665543

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.26  E-value=1.6e-06  Score=50.67  Aligned_cols=39  Identities=51%  Similarity=0.743  Sum_probs=23.0

Q ss_pred             CcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcc
Q psy3787          97 NLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVR  135 (263)
Q Consensus        97 ~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~  135 (263)
                      +|++|++++|.|+.+|..++.+++|+.|++++|+++.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            456666666666666655666666666666666666544

...

>KOG4658|consensus

Probab=98.23  E-value=8.2e-07  Score=84.33  Aligned_cols=131  Identities=25%  Similarity=0.400  Sum_probs=105.1

Q ss_pred             ccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCC--CCCCchhhhhCCCCccEEEeecC-cCccccccccCCC
Q psy3787          20 LPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK--INNMENDYFLTLTKLSLLNLKNN-KISEVSSNVGDLI   96 (263)
Q Consensus        20 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~   96 (263)
                      .|........+...+.+|.+..++.-..++.|++|-+.+|.  +..+....|..++.|+.||+++| .++++|..++.+.
T Consensus       516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li  595 (889)
T KOG4658|consen  516 IPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV  595 (889)
T ss_pred             cccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence            45566667888999999998877765566789999999996  77888888999999999999987 6779999999999


Q ss_pred             CcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhC
Q psy3787          97 NLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKT  151 (263)
Q Consensus        97 ~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~  151 (263)
                      +|++|+++++.++.+|..++.+..|.+|++..+.-....+.+... +..|+++.+
T Consensus       596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~-L~~Lr~L~l  649 (889)
T KOG4658|consen  596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLE-LQSLRVLRL  649 (889)
T ss_pred             hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhh-cccccEEEe
Confidence            999999999999999999999999999999987543322222221 235555554

>KOG4579|consensus

Probab=98.22  E-value=4.7e-08  Score=70.76  Aligned_cols=107  Identities=26%  Similarity=0.367  Sum_probs=89.7

Q ss_pred             CCEEEeecCccCCCCccc----cCCCCCCcEEEecCCCCCCCcC-C-CCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787           5 LKTLDLSHNKLVSDSLPL----FIDMRSLTELNLSYNQLTMLPV-C-TDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL   78 (263)
Q Consensus         5 L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~l~~l~~-~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L   78 (263)
                      +..++++.+++-.  +++    +....+|+..++++|.+..+|. | ...+..+.+++++|.+.++|.. +..++.|+.+
T Consensus        29 ~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhhH--HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhc
Confidence            4567788887664  444    6677788899999999998873 3 3456889999999999999888 8999999999


Q ss_pred             EeecCcCccccccccCCCCcCEEEccCCcCCCcccc
Q psy3787          79 NLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE  114 (263)
Q Consensus        79 ~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~  114 (263)
                      +++.|.+...|..+..+.++-.|+..+|.+..+|-.
T Consensus       106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             ccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            999999999999887799999999999988887655

>KOG1644|consensus

Probab=98.10  E-value=6e-06  Score=63.78  Aligned_cols=112  Identities=26%  Similarity=0.360  Sum_probs=84.1

Q ss_pred             cccCCCCCCcEEEecCCCCCCCcCCC-CCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcccccccc-CCCCc
Q psy3787          21 PLFIDMRSLTELNLSYNQLTMLPVCT-DCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVG-DLINL   98 (263)
Q Consensus        21 ~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~-~l~~L   98 (263)
                      |.+.....-+.+++.+.++..+..++ ...+...+|+++|.+.....  |..+++|.+|.+.+|+|+.+...+. .+++|
T Consensus        13 pqy~~~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l   90 (233)
T KOG1644|consen   13 PQYINSVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNL   90 (233)
T ss_pred             hhhhhhccccccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhcccc
Confidence            33444444667778877776554322 24567789999999887654  7788999999999999999877664 45679


Q ss_pred             CEEEccCCcCCCccc--cccCCCcccEEEecCCCCCCc
Q psy3787          99 AILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPIKTV  134 (263)
Q Consensus        99 ~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~  134 (263)
                      +.|.+.+|.|.++..  -+..++.|++|.+-+|+++.-
T Consensus        91 ~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k  128 (233)
T KOG1644|consen   91 KTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHK  128 (233)
T ss_pred             ceEEecCcchhhhhhcchhccCCccceeeecCCchhcc
Confidence            999999999987643  378899999999999876553

>KOG2982|consensus

Probab=97.91  E-value=2e-06  Score=70.23  Aligned_cols=84  Identities=27%  Similarity=0.329  Sum_probs=51.2

Q ss_pred             CCCCEEEeecCccCCCC-ccc-cCCCCCCcEEEecCCCCCC-CcCC-CCCCCCcEEEecCCCCCCC-chhhhhCCCCccE
Q psy3787           3 SHLKTLDLSHNKLVSDS-LPL-FIDMRSLTELNLSYNQLTM-LPVC-TDCKNLTHLLLGFNKINNM-ENDYFLTLTKLSL   77 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~-l~~~-~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~   77 (263)
                      +.++++|+.+|.++.++ +.+ +.++|+|++|+++.|++.. +... ....+|+.|-+.+..+... ....+..++.+++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            34667777777776622 222 6677777777777777663 2222 3456777777777766522 2233455667777


Q ss_pred             EEeecCcCc
Q psy3787          78 LNLKNNKIS   86 (263)
Q Consensus        78 L~l~~~~l~   86 (263)
                      +.++.|+++
T Consensus       151 lHmS~N~~r  159 (418)
T KOG2982|consen  151 LHMSDNSLR  159 (418)
T ss_pred             hhhccchhh
Confidence            777777655

>KOG3665|consensus

Probab=97.86  E-value=9.7e-06  Score=75.29  Aligned_cols=128  Identities=26%  Similarity=0.290  Sum_probs=96.3

Q ss_pred             CCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCCc---CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787           4 HLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL   78 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L   78 (263)
                      +|+.|++++........+.  ...+|.|+.|.+.+-.+..-.   -..++++|..||+|+++++.+  ..++.+++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            5788899887655434444  456899999999998776322   256789999999999999887  448899999999


Q ss_pred             EeecCcCcccc--ccccCCCCcCEEEccCCcCCCcc-------ccccCCCcccEEEecCCCCCC
Q psy3787          79 NLKNNKISEVS--SNVGDLINLAILDLSDNELTDVP-------CELSSLFHLKSLFLGGNPIKT  133 (263)
Q Consensus        79 ~l~~~~l~~lp--~~~~~l~~L~~L~l~~n~l~~l~-------~~~~~l~~L~~L~l~~n~l~~  133 (263)
                      .+.+-.+....  ..+..+++|++||+|......-+       +.-..+++|+.||.+++.+..
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            99887777543  24678999999999987554322       223568999999999876554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.67  E-value=3e-05  Score=62.77  Aligned_cols=25  Identities=12%  Similarity=0.187  Sum_probs=12.9

Q ss_pred             CCCcccEEEecCCCCCCcchHHHHh
Q psy3787         117 SLFHLKSLFLGGNPIKTVRNDILQD  141 (263)
Q Consensus       117 ~l~~L~~L~l~~n~l~~~~~~~~~~  141 (263)
                      .-+.|+.+....|++...+......
T Consensus       155 ~kp~Le~vicgrNRlengs~~~~a~  179 (388)
T COG5238         155 DKPKLEVVICGRNRLENGSKELSAA  179 (388)
T ss_pred             cCCCceEEEeccchhccCcHHHHHH
Confidence            3445555555555555555444433

>KOG2120|consensus

Probab=97.64  E-value=1.1e-06  Score=71.75  Aligned_cols=81  Identities=26%  Similarity=0.225  Sum_probs=34.7

Q ss_pred             CcEEEecCCCCC-CCchhhhhCCCCccEEEeecCcCc-cccccccCCCCcCEEEccCC-cCCCcc--ccccCCCcccEEE
Q psy3787          51 LTHLLLGFNKIN-NMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDN-ELTDVP--CELSSLFHLKSLF  125 (263)
Q Consensus        51 L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~n-~l~~l~--~~~~~l~~L~~L~  125 (263)
                      ++++|+++..++ ......++.+.+|+.+.+.++.+. .+...+..-.+|+.++++.+ .++...  ..+..++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            444555554444 111222334444555555554444 23333344444555555443 343221  1244455555555


Q ss_pred             ecCCCC
Q psy3787         126 LGGNPI  131 (263)
Q Consensus       126 l~~n~l  131 (263)
                      ++.+.+
T Consensus       267 lsWc~l  272 (419)
T KOG2120|consen  267 LSWCFL  272 (419)
T ss_pred             chHhhc
Confidence            555433

>KOG3665|consensus

Probab=97.63  E-value=4.6e-05  Score=70.88  Aligned_cols=109  Identities=22%  Similarity=0.276  Sum_probs=85.1

Q ss_pred             CCCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCC-CchhhhhCCCCccEE
Q psy3787           1 MLSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINN-MENDYFLTLTKLSLL   78 (263)
Q Consensus         1 ~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L   78 (263)
                      ++|+|++|.+.+-.+....... ..++++|..||+++++++.+..++.+++|+.|.+.+=.+.. ..-..+..+++|+.|
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL  225 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL  225 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence            5899999999998877644445 77899999999999999988888889999998887766663 222336789999999


Q ss_pred             EeecCcCcccc---c----cccCCCCcCEEEccCCcCC
Q psy3787          79 NLKNNKISEVS---S----NVGDLINLAILDLSDNELT  109 (263)
Q Consensus        79 ~l~~~~l~~lp---~----~~~~l~~L~~L~l~~n~l~  109 (263)
                      |+++.+-...+   .    --..++.|+.||.+++.+.
T Consensus       226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             eccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            99997554222   1    1134789999999998776

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.61  E-value=7.3e-05  Score=60.58  Aligned_cols=132  Identities=23%  Similarity=0.244  Sum_probs=65.6

Q ss_pred             CCCCCEEEeecCccCCCCccc----cCCCCCCcEEEecCCCCCCCc---------------CCCCCCCCcEEEecCCCCC
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL----FIDMRSLTELNLSYNQLTMLP---------------VCTDCKNLTHLLLGFNKIN   62 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~l~~l~---------------~~~~~~~L~~L~l~~n~~~   62 (263)
                      ++.|+..++++|.|....++.    +++...|.+|.+++|.+..+.               ....-+.|+.+.+.+|++.
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            455666666666665533333    455556666666666554221               0123455666666666554


Q ss_pred             CCc----hhhhhCCCCccEEEeecCcCcc--c----cccccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEec
Q psy3787          63 NME----NDYFLTLTKLSLLNLKNNKISE--V----SSNVGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLG  127 (263)
Q Consensus        63 ~~~----~~~~~~l~~L~~L~l~~~~l~~--l----p~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~  127 (263)
                      ..+    ...+.....|+.+.+..|.|+.  +    -..+.-+.+|+.|++.+|-++.     +...+..++.|+.|.+.
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence            322    2222333455666666665551  1    1122344556666666665542     22234445555666666


Q ss_pred             CCCCCC
Q psy3787         128 GNPIKT  133 (263)
Q Consensus       128 ~n~l~~  133 (263)
                      +|.++.
T Consensus       251 DClls~  256 (388)
T COG5238         251 DCLLSN  256 (388)
T ss_pred             chhhcc
Confidence            655544

>KOG2120|consensus

Probab=97.48  E-value=7e-06  Score=67.14  Aligned_cols=176  Identities=19%  Similarity=0.167  Sum_probs=111.3

Q ss_pred             CCcEEEecCCCCCCCc---CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC-cCccc--cccccCCCCcCEE
Q psy3787          28 SLTELNLSYNQLTMLP---VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN-KISEV--SSNVGDLINLAIL  101 (263)
Q Consensus        28 ~L~~L~l~~n~l~~l~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l--p~~~~~l~~L~~L  101 (263)
                      .++++|++...++.-.   .+..+.+|+.|.+.++++.+-....++...+|+.++++.+ ++++.  ...+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            5888999988887322   3567888888899999888766667888889999999986 67643  3346788889999


Q ss_pred             EccCCcCCC--ccccccC-CCcccEEEecCCCCC--CcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCccccc
Q psy3787         102 DLSDNELTD--VPCELSS-LFHLKSLFLGGNPIK--TVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEIN  176 (263)
Q Consensus       102 ~l~~n~l~~--l~~~~~~-l~~L~~L~l~~n~l~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (263)
                      +++-+.+..  +...+.. -++|..|+++|+.-.  .-+-+........+.+|++++...    +          .....
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~----l----------~~~~~  331 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM----L----------KNDCF  331 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc----c----------CchHH
Confidence            888876652  1111221 236777777776321  112222222244566677765442    0          12233


Q ss_pred             ccccccCCcceeccc-cccccChhHHhhcCCccceeEEEeccCC
Q psy3787         177 IDKYKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINIDKY  219 (263)
Q Consensus       177 ~~~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~ls~n  219 (263)
                      ..+..++.|++|.++ .....|..+.... +.++|.+ ||+-++
T Consensus       332 ~~~~kf~~L~~lSlsRCY~i~p~~~~~l~-s~psl~y-Ldv~g~  373 (419)
T KOG2120|consen  332 QEFFKFNYLQHLSLSRCYDIIPETLLELN-SKPSLVY-LDVFGC  373 (419)
T ss_pred             HHHHhcchheeeehhhhcCCChHHeeeec-cCcceEE-EEeccc
Confidence            446677888888888 4444444433332 3567887 888776

>KOG2982|consensus

Probab=97.46  E-value=3.7e-05  Score=63.04  Aligned_cols=104  Identities=23%  Similarity=0.224  Sum_probs=54.7

Q ss_pred             CCcEEEecCCCCCCCcC---C-CCCCCCcEEEecCCCCCC--CchhhhhCCCCccEEEeecCcCccccccc-cCCCCcCE
Q psy3787          28 SLTELNLSYNQLTMLPV---C-TDCKNLTHLLLGFNKINN--MENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAI  100 (263)
Q Consensus        28 ~L~~L~l~~n~l~~l~~---~-~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~  100 (263)
                      .++.+.+.++.|.....   + ..+..++.+|+.+|.+..  .....+.+++.|++|+++.|.+...-... ....+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            34455555555553332   1 234556666777776662  22333456677777777777665322222 24556666


Q ss_pred             EEccCCcCC--CccccccCCCcccEEEecCCCC
Q psy3787         101 LDLSDNELT--DVPCELSSLFHLKSLFLGGNPI  131 (263)
Q Consensus       101 L~l~~n~l~--~l~~~~~~l~~L~~L~l~~n~l  131 (263)
                      +-+++..+.  .....+..++.++.+.++.|.+
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            666666543  3333445555555555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.41  E-value=0.00096  Score=57.95  Aligned_cols=52  Identities=25%  Similarity=0.300  Sum_probs=25.7

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCC-CCCCCcCCCCCCCCcEEEecCC
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYN-QLTMLPVCTDCKNLTHLLLGFN   59 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~L~~L~l~~n   59 (263)
                      .+++.|++++|.++.  +|.+  -.+|+.|.+++| .+..+|..- ..+|+.|.+++|
T Consensus        52 ~~l~~L~Is~c~L~s--LP~L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~C  104 (426)
T PRK15386         52 RASGRLYIKDCDIES--LPVL--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHC  104 (426)
T ss_pred             cCCCEEEeCCCCCcc--cCCC--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCc
Confidence            345666666665554  3421  124666666553 244444211 235666666655

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.34  E-value=0.00057  Score=59.32  Aligned_cols=81  Identities=17%  Similarity=0.269  Sum_probs=55.9

Q ss_pred             cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCC-CCCCchhhhhCCCCccEEEeecC-cCccccccccCCCCcCE
Q psy3787          23 FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK-INNMENDYFLTLTKLSLLNLKNN-KISEVSSNVGDLINLAI  100 (263)
Q Consensus        23 ~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~  100 (263)
                      +..+++++.|++++|.+..+|.+  ..+|+.|.++++. ++.++ +.+  ..+|+.|.+++| .+..+|..      |+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISGLPES------VRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCC-chh--hhhhhheEccCcccccccccc------cce
Confidence            55678999999999999988843  3479999998754 44443 323  357899999998 77777654      555


Q ss_pred             EEccCCc---CCCcccc
Q psy3787         101 LDLSDNE---LTDVPCE  114 (263)
Q Consensus       101 L~l~~n~---l~~l~~~  114 (263)
                      |++..+.   +..+|..
T Consensus       117 L~L~~n~~~~L~~LPss  133 (426)
T PRK15386        117 LEIKGSATDSIKNVPNG  133 (426)
T ss_pred             EEeCCCCCcccccCcch
Confidence            6666554   3345543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.29  E-value=0.0014  Score=47.49  Aligned_cols=112  Identities=15%  Similarity=0.377  Sum_probs=60.6

Q ss_pred             cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccc-cccCCCCcC
Q psy3787          23 FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSS-NVGDLINLA   99 (263)
Q Consensus        23 ~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~   99 (263)
                      |.++++|+.+.+.. .+..++  .|..+.+++.+.+..+ +..+...+|..+..++.+.+.+ .+..++. .+..+.+++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            77778888888875 455554  4777778888888774 7777777787777788888865 5555554 355678888


Q ss_pred             EEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHH
Q psy3787         100 ILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQ  140 (263)
Q Consensus       100 ~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~  140 (263)
                      .+.+..+ +..++. .+..+ .++.+.+.. .+..++...+.
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~  123 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFK  123 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccc
Confidence            8888665 555543 36666 888887765 55556555443

>KOG2739|consensus

Probab=97.20  E-value=0.00017  Score=57.90  Aligned_cols=103  Identities=28%  Similarity=0.242  Sum_probs=61.0

Q ss_pred             cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCC--CCC-CCchhhhhCCCCccEEEeecCcCccccc--cccCCCC
Q psy3787          23 FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFN--KIN-NMENDYFLTLTKLSLLNLKNNKISEVSS--NVGDLIN   97 (263)
Q Consensus        23 ~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n--~~~-~~~~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~   97 (263)
                      .-.+..|+.+.+.+..++.+..+..+++|+.|.++.|  ++. ++... ...+++|+++++++|+++.+..  .+..+.+
T Consensus        39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcc
Confidence            3345667777777777776666677778888888888  444 22222 2334777777777777764211  1345556


Q ss_pred             cCEEEccCCcCCCcc----ccccCCCcccEEEe
Q psy3787          98 LAILDLSDNELTDVP----CELSSLFHLKSLFL  126 (263)
Q Consensus        98 L~~L~l~~n~l~~l~----~~~~~l~~L~~L~l  126 (263)
                      |..|++.+|..+.+.    ..+.-+++|.+++-
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            666777666555431    12445555555543

>KOG2123|consensus

Probab=97.16  E-value=1.1e-05  Score=65.48  Aligned_cols=82  Identities=26%  Similarity=0.313  Sum_probs=55.4

Q ss_pred             CCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcccccc--ccCCCCcCEEEc
Q psy3787          26 MRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSN--VGDLINLAILDL  103 (263)
Q Consensus        26 l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~--~~~l~~L~~L~l  103 (263)
                      +.+.+.|++.+|.++.+.-...++.|+.|.++-|.|+.+.+  +..+++|++|++..|.|..+.+-  +.++++|+.|.+
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            44566677777777766656667777777777777776655  56677777777777777766543  466777777777


Q ss_pred             cCCcCC
Q psy3787         104 SDNELT  109 (263)
Q Consensus       104 ~~n~l~  109 (263)
                      ..|...
T Consensus        96 ~ENPCc  101 (388)
T KOG2123|consen   96 DENPCC  101 (388)
T ss_pred             ccCCcc
Confidence            766543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.12  E-value=0.0027  Score=45.98  Aligned_cols=111  Identities=21%  Similarity=0.415  Sum_probs=52.9

Q ss_pred             CCCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787           3 SHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL   78 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L   78 (263)
                      ++|+.+.+.. .+..  ++.  |.++++|+.+.+..+ +..++  .|..+++++.+.+.. .+..+....|..+.+++.+
T Consensus        12 ~~l~~i~~~~-~~~~--I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   12 SNLESITFPN-TIKK--IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             TT--EEEETS-T--E--E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCEEEECC-CeeE--eChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            4566666664 3444  333  777777888887764 55554  366776777777765 5555556667777778777


Q ss_pred             EeecCcCcccccc-ccCCCCcCEEEccCCcCCCccc-cccCCCcc
Q psy3787          79 NLKNNKISEVSSN-VGDLINLAILDLSDNELTDVPC-ELSSLFHL  121 (263)
Q Consensus        79 ~l~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L  121 (263)
                      .+..+ ++.++.. +... .++.+.+.. .+..++. .|..+++|
T Consensus        87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            77654 5555443 4454 777777665 4444533 35555544

>KOG2123|consensus

Probab=96.74  E-value=0.00016  Score=58.78  Aligned_cols=98  Identities=21%  Similarity=0.256  Sum_probs=76.6

Q ss_pred             CCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCcccc--ccCCCcccEEE
Q psy3787          48 CKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE--LSSLFHLKSLF  125 (263)
Q Consensus        48 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~--~~~l~~L~~L~  125 (263)
                      +.+.+.|++.++.+.++  +....|+.|+.|.++-|+|+.+.. +..++.|++|++..|.|.++.+-  +.++++|+.|.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            45667789999998876  346789999999999999998865 46889999999999999988643  78999999999


Q ss_pred             ecCCCCCC-cchHHHHhHHHHhhh
Q psy3787         126 LGGNPIKT-VRNDILQDSKRIISH  148 (263)
Q Consensus       126 l~~n~l~~-~~~~~~~~~~~~l~~  148 (263)
                      +..|+-.+ -+...-...++.|-+
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPn  118 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPN  118 (388)
T ss_pred             hccCCcccccchhHHHHHHHHccc
Confidence            99998776 444443333344433

>KOG2739|consensus

Probab=96.02  E-value=0.0042  Score=50.10  Aligned_cols=106  Identities=28%  Similarity=0.283  Sum_probs=70.7

Q ss_pred             CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCC---CCcC-CCCCCCCcEEEecCCCCC---CCchhhhhCCCCcc
Q psy3787           4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT---MLPV-CTDCKNLTHLLLGFNKIN---NMENDYFLTLTKLS   76 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~---~l~~-~~~~~~L~~L~l~~n~~~---~~~~~~~~~l~~L~   76 (263)
                      .++.+++.+..++.  +..+-.+++|++|.++.|.+.   .++. ...+++|++++++.|++.   ++.+  +..+.+|.
T Consensus        44 ~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~  119 (260)
T KOG2739|consen   44 ELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLK  119 (260)
T ss_pred             chhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchh
Confidence            44555555655555  555778889999999999443   3332 345699999999999876   3333  56778899


Q ss_pred             EEEeecCcCccccc----cccCCCCcCEEEccCCcCCCccc
Q psy3787          77 LLNLKNNKISEVSS----NVGDLINLAILDLSDNELTDVPC  113 (263)
Q Consensus        77 ~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~n~l~~l~~  113 (263)
                      .|++.+|..+.+..    .+.-+++|++++..+..=...|.
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~  160 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPE  160 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhccccccccCCccccc
Confidence            99999998775421    24556777777755543333343

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.92  E-value=0.0041  Score=28.17  Aligned_cols=16  Identities=6%  Similarity=0.229  Sum_probs=10.7

Q ss_pred             ceeEEEeccCCcccccC
Q psy3787         209 ECTIEINIDKYKLDRTK  225 (263)
Q Consensus       209 ~L~~~L~ls~n~l~~ip  225 (263)
                      +|+. |++++|+++.+|
T Consensus         2 ~L~~-L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRT-LDLSNNRLTSLP   17 (17)
T ss_dssp             T-SE-EEETSS--SSE-
T ss_pred             ccCE-EECCCCCCCCCc
Confidence            5898 999999998886

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.67  E-value=0.0056  Score=29.72  Aligned_cols=15  Identities=60%  Similarity=0.904  Sum_probs=6.1

Q ss_pred             cCEEEccCCcCCCcc
Q psy3787          98 LAILDLSDNELTDVP  112 (263)
Q Consensus        98 L~~L~l~~n~l~~l~  112 (263)
                      |++|++++|.++.+|
T Consensus         2 L~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIP   16 (22)
T ss_dssp             ESEEEETSSEESEEG
T ss_pred             ccEEECCCCcCEeCC
Confidence            334444444444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.54  E-value=0.0073  Score=29.32  Aligned_cols=19  Identities=26%  Similarity=0.546  Sum_probs=10.8

Q ss_pred             ccEEEeecCcCcccccccc
Q psy3787          75 LSLLNLKNNKISEVSSNVG   93 (263)
Q Consensus        75 L~~L~l~~~~l~~lp~~~~   93 (263)
                      |++|++++|+++.+|..++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            5556666666655555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.01  E-value=0.013  Score=29.57  Aligned_cols=21  Identities=5%  Similarity=0.101  Sum_probs=18.3

Q ss_pred             cceeEEEeccCCcccccCcccc
Q psy3787         208 QECTIEINIDKYKLDRTKTLTL  229 (263)
Q Consensus       208 ~~L~~~L~ls~n~l~~ip~~~~  229 (263)
                      ++|+. |++++|+|+.+|...+
T Consensus         2 ~~L~~-L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRE-LDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCE-EECCCCcCCcCCHHHc
Confidence            46998 9999999999998765

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.01  E-value=0.013  Score=29.57  Aligned_cols=21  Identities=5%  Similarity=0.101  Sum_probs=18.3

Q ss_pred             cceeEEEeccCCcccccCcccc
Q psy3787         208 QECTIEINIDKYKLDRTKTLTL  229 (263)
Q Consensus       208 ~~L~~~L~ls~n~l~~ip~~~~  229 (263)
                      ++|+. |++++|+|+.+|...+
T Consensus         2 ~~L~~-L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRE-LDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCE-EECCCCcCCcCCHHHc
Confidence            46998 9999999999998765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.17  E-value=0.047  Score=27.49  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=15.8

Q ss_pred             CcccEEEecCCCCCCcchHHHH
Q psy3787         119 FHLKSLFLGGNPIKTVRNDILQ  140 (263)
Q Consensus       119 ~~L~~L~l~~n~l~~~~~~~~~  140 (263)
                      ++|+.|++++|.++.+|...+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            5677777888877777776553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.17  E-value=0.047  Score=27.49  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=15.8

Q ss_pred             CcccEEEecCCCCCCcchHHHH
Q psy3787         119 FHLKSLFLGGNPIKTVRNDILQ  140 (263)
Q Consensus       119 ~~L~~L~l~~n~l~~~~~~~~~  140 (263)
                      ++|+.|++++|.++.+|...+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            5677777888877777776553

>KOG4308|consensus

Probab=93.16  E-value=0.0012  Score=59.03  Aligned_cols=182  Identities=17%  Similarity=0.169  Sum_probs=96.8

Q ss_pred             CcEEEecCCCCCCCc------CCCCCCCCcEEEecCCCCCCCchhhh----hCC-CCccEEEeecCcCc-----cccccc
Q psy3787          29 LTELNLSYNQLTMLP------VCTDCKNLTHLLLGFNKINNMENDYF----LTL-TKLSLLNLKNNKIS-----EVSSNV   92 (263)
Q Consensus        29 L~~L~l~~n~l~~l~------~~~~~~~L~~L~l~~n~~~~~~~~~~----~~l-~~L~~L~l~~~~l~-----~lp~~~   92 (263)
                      +..+++.+|.+..-.      .+....+|+.|++++|.++......+    ... ..+++|.+..|.++     .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            566666677666322      24556667777777777663222111    122 34556666666665     234445


Q ss_pred             cCCCCcCEEEccCCcCCC-----cccccc----CCCcccEEEecCCCCCCcchHHHHhH----HHHhhhhhCCCCccccc
Q psy3787          93 GDLINLAILDLSDNELTD-----VPCELS----SLFHLKSLFLGGNPIKTVRNDILQDS----KRIISHIKTSRLDYHCQ  159 (263)
Q Consensus        93 ~~l~~L~~L~l~~n~l~~-----l~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~~----~~~l~~l~~~~~~~~~~  159 (263)
                      .....++.++++.|.+..     ++..+.    ...+++.+.+.++.++..........    ...+..+++..+.    
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~----  244 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK----  244 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC----
Confidence            556667777777776642     122233    46677778888777764333332222    1112233333222    


Q ss_pred             ccCCCCCCCcCCccccccccccc-CCcceeccc--ccc-ccChhHHhhcCCccceeEEEeccCCccc
Q psy3787         160 NVDGGGMSSQESTSEINIDKYKL-DRTKTLTLC--KVI-NIPESVYMRGMSSQECTIEINIDKYKLD  222 (263)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~--~~~-~l~~~~~~~~~~~~~L~~~L~ls~n~l~  222 (263)
                       +.+.+      .....+.+..+ +.++.++++  .++ .-..++.+.....++++. +.+++|.+.
T Consensus       245 -l~d~g------~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~-l~l~~n~l~  303 (478)
T KOG4308|consen  245 -LGDVG------VEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEE-LSLSNNPLT  303 (478)
T ss_pred             -cchHH------HHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHH-hhcccCccc
Confidence             22222      33344445555 677788877  443 333344444444456887 888888765

>KOG0473|consensus

Probab=92.81  E-value=0.0015  Score=52.07  Aligned_cols=87  Identities=21%  Similarity=0.163  Sum_probs=59.1

Q ss_pred             CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEE
Q psy3787          45 CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSL  124 (263)
Q Consensus        45 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L  124 (263)
                      +......+.||++.|++...... |+-++.+..++++.|.+..+|..+..+..+++++.-.|..+..|.+++..+.++++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence            34445566677777765544333 55566677777777777777777766666777777777777777777777777777


Q ss_pred             EecCCCCC
Q psy3787         125 FLGGNPIK  132 (263)
Q Consensus       125 ~l~~n~l~  132 (263)
                      +..+|++.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            77777644

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=88.50  E-value=0.29  Score=24.72  Aligned_cols=19  Identities=16%  Similarity=0.167  Sum_probs=16.5

Q ss_pred             ceeEEEeccCCcccccCccc
Q psy3787         209 ECTIEINIDKYKLDRTKTLT  228 (263)
Q Consensus       209 ~L~~~L~ls~n~l~~ip~~~  228 (263)
                      +|+. |++++|+++.+|...
T Consensus         3 ~L~~-L~vs~N~Lt~LPeL~   21 (26)
T smart00364        3 SLKE-LNVSNNQLTSLPELX   21 (26)
T ss_pred             ccce-eecCCCccccCcccc
Confidence            5888 999999999999744

>KOG4341|consensus

Probab=86.74  E-value=0.065  Score=46.40  Aligned_cols=35  Identities=26%  Similarity=0.203  Sum_probs=18.2

Q ss_pred             CCCcCEEEccCC-cCCCccc-c-ccCCCcccEEEecCC
Q psy3787          95 LINLAILDLSDN-ELTDVPC-E-LSSLFHLKSLFLGGN  129 (263)
Q Consensus        95 l~~L~~L~l~~n-~l~~l~~-~-~~~l~~L~~L~l~~n  129 (263)
                      +..|+.++.+++ .++..+- . ..+..+|+.+.+.++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c  330 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGC  330 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecccc
Confidence            445566665554 3332221 1 235566777777666

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=85.68  E-value=0.59  Score=23.62  Aligned_cols=19  Identities=11%  Similarity=0.340  Sum_probs=15.5

Q ss_pred             cceeEEEeccCCcccccCcc
Q psy3787         208 QECTIEINIDKYKLDRTKTL  227 (263)
Q Consensus       208 ~~L~~~L~ls~n~l~~ip~~  227 (263)
                      ++|+. |++++|+|+.|...
T Consensus         2 ~~L~~-L~L~~NkI~~IEnL   20 (26)
T smart00365        2 TNLEE-LDLSQNKIKKIENL   20 (26)
T ss_pred             CccCE-EECCCCccceecCc
Confidence            46898 99999999877654

>KOG4308|consensus

Probab=83.53  E-value=0.044  Score=49.14  Aligned_cols=15  Identities=33%  Similarity=0.282  Sum_probs=8.2

Q ss_pred             CcccEEEecCCCCCC
Q psy3787         119 FHLKSLFLGGNPIKT  133 (263)
Q Consensus       119 ~~L~~L~l~~n~l~~  133 (263)
                      ..++.+++..|.+++
T Consensus       262 ~~l~~l~l~~nsi~~  276 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITE  276 (478)
T ss_pred             hhhhhhhhhcCCccc
Confidence            445555555555554

>KOG0473|consensus

Probab=82.08  E-value=0.023  Score=45.43  Aligned_cols=86  Identities=19%  Similarity=0.105  Sum_probs=71.2

Q ss_pred             cCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEE
Q psy3787          23 FIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAIL  101 (263)
Q Consensus        23 ~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L  101 (263)
                      +..+...+.||++.|++..+. .|+.+..+..++++.|.+...+.+ +.+...+..++..+|+.+..|.+....+.++++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence            777888999999999877554 466677788899999988877655 677788888999999999999999999999999


Q ss_pred             EccCCcCC
Q psy3787         102 DLSDNELT  109 (263)
Q Consensus       102 ~l~~n~l~  109 (263)
                      +...+.+.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            98888764

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.70  E-value=0.76  Score=22.40  Aligned_cols=14  Identities=0%  Similarity=0.252  Sum_probs=10.1

Q ss_pred             cceeEEEeccCCccc
Q psy3787         208 QECTIEINIDKYKLD  222 (263)
Q Consensus       208 ~~L~~~L~ls~n~l~  222 (263)
                      ++|+. |++++|+|+
T Consensus         2 ~~L~~-L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLET-LDLSNNQIT   15 (24)
T ss_dssp             TT-SE-EE-TSSBEH
T ss_pred             CCCCE-EEccCCcCC
Confidence            46998 999999876

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	263
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-04
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-04
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-04

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L+ L  L+L +N+L + S  +F D+  L  L L+ NQL  LP  V      L  L LG N
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 60  KINNMENDYFXXXXXXXXXXXXXXXISEVSSNVGD-LINLAILDLSDNELTDVP 112
           ++ ++ +  F               +  + +   D L NL  L LS N+L  VP
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L+ L  L+L +N+L + S  +F D+  L  L L+ NQL  LP  V      L  L LG N
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 60  KINNMENDYFXXXXXXXXXXXXXXXISEVSSNVGD-LINLAILDLSDNELTDVP 112
           ++ ++ +  F               +  + +   D L NL  L LS N+L  VP
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L +L+TL ++ NKL +  + +F  + +L EL L  NQL  LP  V      LT+L LG+N
Sbjct: 84  LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 60  KINNMENDYFXXXXXXXXXXXXXXXISEVSSNVGD-LINLAILDLSDNELTDVP 112
           ++ ++    F               +  V     D L  L  L L +N+L  VP
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	263
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-27
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-23
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-22
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-23
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-22
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-20
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-22
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-22
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-22
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-21
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-20
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-19
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-19
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-18
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-18
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-17
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-17
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-14
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	1e-04

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  108 bits (271), Expect = 6e-28
 Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 4/139 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFN 59
           L+ +  ++L  N L S  +    F  M+ L+ + ++   +T +P      +LT L L  N
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGN 202

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSSL 118
           KI  ++      L  L+ L L  N IS V +    +  +L  L L++N+L  VP  L+  
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 262

Query: 119 FHLKSLFLGGNPIKTVRND 137
            +++ ++L  N I  + ++
Sbjct: 263 KYIQVVYLHNNNISAIGSN 281

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 94.3 bits (235), Expect = 7e-23
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 10/145 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
           L  L+ L LS N+L      +    ++L EL +  N++T +          +  + LG N
Sbjct: 99  LVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155

Query: 60  KINN--MENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LS 116
            + +  +EN  F  + KLS + + +  I+ +   +    +L  L L  N++T V    L 
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLK 213

Query: 117 SLFHLKSLFLGGNPIKTVRNDILQD 141
            L +L  L L  N I  V N  L +
Sbjct: 214 GLNNLAKLGLSFNSISAVDNGSLAN 238

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.9 bits (234), Expect = 1e-22
 Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 12/141 (8%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
           +  L  + ++   + +    L     SLTEL+L  N++T +   +     NL  L L FN
Sbjct: 170 MKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP------- 112
            I+ ++N        L  L+L NNK+ +V   + D   + ++ L +N ++ +        
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 113 CELSSLFHLKSLFLGGNPIKT 133
              +       + L  NP++ 
Sbjct: 287 GYNTKKASYSGVSLFSNPVQY 307

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 92.4 bits (230), Expect = 4e-22
 Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L +L TL L +NK+   S   F  +  L  L LS NQL  LP     K L  L +  N+I
Sbjct: 75  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-PKTLQELRVHENEI 133

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVG---DLINLAILDLSDNELTDVPCELSSL 118
             +    F  L ++ ++ L  N +       G    +  L+ + ++D  +T +P     L
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP---QGL 190

Query: 119 F-HLKSLFLGGNPIKTVRNDILQ 140
              L  L L GN I  V    L+
Sbjct: 191 PPSLTELHLDGNKITKVDAASLK 213

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.4 bits (204), Expect = 2e-18
 Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 9/144 (6%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNK 60
                LDL +NK+       F ++++L  L L  N+++ +          L  L L  N+
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE---LS 116
           +  +          L  L +  N+I++V  +V   L  + +++L  N L     E     
Sbjct: 112 LKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 117 SLFHLKSLFLGGNPIKTVRNDILQ 140
            +  L  + +    I T+   +  
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPP 192

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.0 bits (198), Expect = 1e-17
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 13/141 (9%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
           +   L  L L  NK+          + +L +L LS+N ++ +      +  +L  L L  
Sbjct: 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-------GDLINLAILDLSDNELTDV 111
           NK+  +          + ++ L NN IS + SN            + + + L  N +   
Sbjct: 250 NKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308

Query: 112 ---PCELSSLFHLKSLFLGGN 129
              P     ++   ++ LG  
Sbjct: 309 EIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 79.3 bits (196), Expect = 2e-17
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 8/135 (5%)

Query: 4   HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNKI 61
           HL+ +  S   L  + +P  +       L+L  N++T +      + KNL  L+L  NKI
Sbjct: 32  HLRVVQCSDLGL--EKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFH 120
           + +    F  L KL  L L  N++ E+   +     L  L + +NE+T V     + L  
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQ 146

Query: 121 LKSLFLGGNPIKTVR 135
           +  + LG NP+K+  
Sbjct: 147 MIVVELGTNPLKSSG 161

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 13/94 (13%)

Query: 2   LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--------VCTDCKNLT 52
             HL+ L L++NKLV   +P    D + +  + L  N ++ +           T   + +
Sbjct: 239 TPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 53  HLLLGFNKIN--NMENDYFLTLTKLSLLNLKNNK 84
            + L  N +    ++   F  +   + + L N K
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  106 bits (266), Expect = 7e-27
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 3/139 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
              ++ LD SHN +     P+      LT L L +N LT      +   L  + L +N++
Sbjct: 204 PIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL 260

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
             +    F+ + +L  L + NN++  ++     +  L +LDLS N L  V         L
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRL 320

Query: 122 KSLFLGGNPIKTVRNDILQ 140
           ++L+L  N I T++     
Sbjct: 321 ENLYLDHNSIVTLKLSTHH 339

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (250), Expect = 2e-24
 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 10/160 (6%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGF 58
           +   L  L L HN L        ++   L E++LSYN+L  +        + L  L +  
Sbjct: 224 VNVELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSL 118
           N++  + N Y   +  L +L+L +N +  V  N      L  L L  N +  +   LS+ 
Sbjct: 282 NRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTH 338

Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC 158
             LK+L L  N       + L+   R ++       D HC
Sbjct: 339 HTLKNLTLSHNDW---DCNSLRALFRNVARPAVDDADQHC 375

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 96.7 bits (241), Expect = 2e-23
 Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 4/143 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
           L++ K +   ++ +      L    R +  LNL+  Q+  +          +  L +GFN
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSS 117
            I  +    F  +  L++L L+ N +S +   +  +   L  L +S+N L  +  +   +
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 118 LFHLKSLFLGGNPIKTVRNDILQ 140
              L++L L  N +  V   ++ 
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIP 186

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 94.3 bits (235), Expect = 2e-22
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
              ++ L +  N +      +F ++  LT L L  N L+ LP  +  +   LT L +  N
Sbjct: 92  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF 119
            +  +E+D F   T L  L L +N+++ V      + +L   ++S N L+     L+   
Sbjct: 152 NLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLS----TLAIPI 205

Query: 120 HLKSLFLGGNPIKTVRNDILQD 141
            ++ L    N I  VR  +  +
Sbjct: 206 AVEELDASHNSINVVRGPVNVE 227

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 88.2 bits (219), Expect = 2e-20
 Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 26/159 (16%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
            + L+ L LS N+L    L L     SL   N+SYN L+ L +      +  L    N I
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLLSTLAIPI---AVEELDASHNSI 217

Query: 62  NNMENDYFLTLTKLSL-------------------LNLKNNKISEVSSNV-GDLINLAIL 101
           N +     + LT L L                   ++L  N++ ++  +    +  L  L
Sbjct: 218 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277

Query: 102 DLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQ 140
            +S+N L  +      +  LK L L  N +  V  +  Q
Sbjct: 278 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ 316

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.5 bits (155), Expect = 9e-12
 Identities = 15/112 (13%), Positives = 40/112 (35%), Gaps = 2/112 (1%)

Query: 32  LNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSN 91
           +++    +          N   +    + +  +      +  ++ LLNL + +I E+ + 
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY 87

Query: 92  V-GDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQD 141
                  +  L +  N +  +P     ++  L  L L  N + ++   I  +
Sbjct: 88  AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 6e-09
 Identities = 15/104 (14%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 45  CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSL-----LNLKNNKISEVSSNV-GDLINL 98
           C D       +     I+    D +     ++L     +  KN+ + ++ + +      +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 99  AILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQD 141
            +L+L+D ++ ++     +    ++ L++G N I+ +   + Q+
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  104 bits (261), Expect = 7e-27
 Identities = 47/133 (35%), Positives = 61/133 (45%), Gaps = 4/133 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L  L TL L    L      LF  + +L  L L  N L  LP     D  NLTHL L  N
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSS 117
           +I+++    F  L  L  L L  N+++ V  +   DL  L  L L  N L+ +P E L+ 
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

Query: 118 LFHLKSLFLGGNP 130
           L  L+ L L  NP
Sbjct: 224 LRALQYLRLNDNP 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.1 bits (245), Expect = 2e-24
 Identities = 39/145 (26%), Positives = 55/145 (37%), Gaps = 5/145 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYN-QLTMLPVCT--DCKNLTHLLLGF 58
             +L  L L  N L       F  +  L +L+LS N QL  +   T      L  L L  
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LS 116
             +  +    F  L  L  L L++N +  +  +   DL NL  L L  N ++ VP     
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174

Query: 117 SLFHLKSLFLGGNPIKTVRNDILQD 141
            L  L  L L  N +  V     +D
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRD 199

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.8 bits (244), Expect = 2e-24
 Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 7/150 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLG 57
           L+ L+ LDLS N  +  S+    F  +  L  L+L    L  L          L +L L 
Sbjct: 79  LALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 58  FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-L 115
            N +  + +D F  L  L+ L L  N+IS V       L +L  L L  N +  V     
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
             L  L +L+L  N +  +  + L   + +
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRAL 227

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.7 bits (223), Expect = 2e-21
 Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 5/144 (3%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN- 59
           +  + + L  N++       F   R+LT L L  N L  +          L  L L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSS 117
           ++ +++   F  L +L  L+L    + E+   +   L  L  L L DN L  +P +    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
           L +L  LFL GN I +V     + 
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRG 175

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 4/120 (3%)

Query: 25  DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84
                   +     L  +PV         + L  N+I+++    F     L++L L +N 
Sbjct: 9   YNEPKVTTSCPQQGLQAVPVGIPA-ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 85  ISEVSSNV-GDLINLAILDLSDNE-LTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQD 141
           ++ + +     L  L  LDLSDN  L  V       L  L +L L    ++ +   + + 
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  105 bits (263), Expect = 5e-26
 Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 4/144 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
             HL+ L+L+ N + +     F ++ +L  L L  N+L ++P  V T   NLT L +  N
Sbjct: 55  FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSS 117
           KI  + +  F  L  L  L + +N +  +S      L +L  L L    LT +P E LS 
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174

Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
           L  L  L L    I  +R+   + 
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKR 198

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (258), Expect = 2e-25
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 4/144 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
           L +LK+L++  N LV  S   F  + SL +L L    LT +P         L  L L   
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186

Query: 60  KINNMENDYFLTLTKLSLLNL-KNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSS 117
            IN + +  F  L +L +L +     +  ++ N    +NL  L ++   LT VP   +  
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246

Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
           L +L+ L L  NPI T+   +L +
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHE 270

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (252), Expect = 1e-24
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 4/134 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L  LK L++SH   +    P  +   +LT L++++  LT +P         L  L L +N
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCEL-SS 117
            I+ +E      L +L  + L   +++ V       L  L +L++S N+LT +   +  S
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318

Query: 118 LFHLKSLFLGGNPI 131
           + +L++L L  NP+
Sbjct: 319 VGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (251), Expect = 2e-24
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 4/143 (2%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNK 60
           +  + LDL  N++ + +   F     L EL L+ N ++ +      +  NL  L L  N+
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSSL 118
           +  +    F  L+ L+ L++  NKI  +   +  DL NL  L++ DN+L  +     S L
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

Query: 119 FHLKSLFLGGNPIKTVRNDILQD 141
             L+ L L    + ++  + L  
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSH 174

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 98.6 bits (246), Expect = 8e-24
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 4/137 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
           L +L+TL L  N+L    L +F  + +LT+L++S N++ +L      D  NL  L +G N
Sbjct: 79  LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSS 117
            +  + +  F  L  L  L L+   ++ + +     L  L +L L    +  +       
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198

Query: 118 LFHLKSLFLGGNPIKTV 134
           L+ LK L +   P    
Sbjct: 199 LYRLKVLEISHWPYLDT 215

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 96.3 bits (240), Expect = 5e-23
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 4/144 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
           L+ L+ L L    L S        +  L  L L +  +  +   +      L  L +   
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVP-CELSS 117
              +      L    L+ L++ +  ++ V       L+ L  L+LS N ++ +    L  
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270

Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
           L  L+ + L G  +  V     + 
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRG 294

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.5 bits (225), Expect = 5e-21
 Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 4/148 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTML--PVCTDCKNLTHLLLGFN 59
           L  L  L L H  + +     F  +  L  L +S+        P C    NLT L +   
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSS 117
            +  +       L  L  LNL  N IS +  ++  +L+ L  + L   +L  V       
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294

Query: 118 LFHLKSLFLGGNPIKTVRNDILQDSKRI 145
           L +L+ L + GN + T+   +      +
Sbjct: 295 LNYLRVLNVSGNQLTTLEESVFHSVGNL 322

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
           L +L+ L+LS+N + +    +  ++  L E+ L   QL ++          L  L +  N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKIS 86
           ++  +E   F ++  L  L L +N ++
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLA 333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (258), Expect = 5e-26
 Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 5/157 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFN 59
           L ++  +++  N L +       F  +  L  L +S  +LT +P     + L  L L  N
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL-PETLNELHLDHN 203

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSSL 118
           KI  +E +  L  +KL  L L +N+I  + +     L  L  L L +N+L+ VP  L  L
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDL 263

Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLD 155
             L+ ++L  N I  V  +        +     + + 
Sbjct: 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.8 bits (226), Expect = 2e-21
 Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 12/137 (8%)

Query: 5   LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNKIN 62
           L  L +S  KL      L     +L EL+L +N++  + +        L  L LG N+I 
Sbjct: 174 LNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230

Query: 63  NMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP-------CEL 115
            +EN     L  L  L+L NNK+S V + + DL  L ++ L  N +T V           
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290

Query: 116 SSLFHLKSLFLGGNPIK 132
               +   + L  NP+ 
Sbjct: 291 VKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.1 bits (224), Expect = 3e-21
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 5/141 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L HL  L L +NK+       F  +R L +L +S N L  +P      +L  L +  N+I
Sbjct: 77  LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-PSSLVELRIHDNRI 135

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVG--DLINLAILDLSDNELTDVPCELSSLF 119
             +    F  L  ++ + +  N +       G  D + L  L +S+ +LT +P +L    
Sbjct: 136 RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE-- 193

Query: 120 HLKSLFLGGNPIKTVRNDILQ 140
            L  L L  N I+ +  + L 
Sbjct: 194 TLNELHLDHNKIQAIELEDLL 214

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.3 bits (222), Expect = 5e-21
 Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 11/145 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L  L+ L +S N LV     L     SL EL +  N++  +P  V +  +N+  + +G N
Sbjct: 101 LRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157

Query: 60  KINN--MENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LS 116
            + N   E   F  L KL+ L +   K++ +  ++     L  L L  N++  +  E L 
Sbjct: 158 PLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLL 214

Query: 117 SLFHLKSLFLGGNPIKTVRNDILQD 141
               L  L LG N I+ + N  L  
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSF 239

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.3 bits (196), Expect = 2e-17
 Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 13/141 (9%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
           +   L  L L HNK+ +  L   +    L  L L +NQ+ M+     +    L  L L  
Sbjct: 191 LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-------GDLINLAILDLSDNELTDV 111
           NK++ +       L  L ++ L  N I++V  N                + L +N +   
Sbjct: 251 NKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

Query: 112 ---PCELSSLFHLKSLFLGGN 129
              P     +    ++  G  
Sbjct: 310 EVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.1 bits (193), Expect = 6e-17
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 8/134 (5%)

Query: 4   HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKI 61
           HL+ +  S   L   ++P  I     T L+L  N ++ L        ++L  L+L  NKI
Sbjct: 34  HLRVVQCSDLGL--KAVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFH 120
           + +    F  L KL  L +  N + E+  N+    +L  L + DN +  VP    S L +
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRN 148

Query: 121 LKSLFLGGNPIKTV 134
           +  + +GGNP++  
Sbjct: 149 MNCIEMGGNPLENS 162

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.1 bits (193), Expect = 6e-17
 Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 8/143 (5%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNK 60
                LDL +N +       F  ++ L  L L  N+++ +        + L  L +  N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSSLF 119
           +  +  +   +L +   L + +N+I +V   V   L N+  +++  N L +   E  +  
Sbjct: 114 LVEIPPNLPSSLVE---LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 120 HLK--SLFLGGNPIKTVRNDILQ 140
            LK   L +    +  +  D+ +
Sbjct: 171 GLKLNYLRISEAKLTGIPKDLPE 193

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.4 bits (147), Expect = 7e-11
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 13/94 (13%)

Query: 2   LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDC--------KNLT 52
           L  L+ L L +NKL    +P    D++ L  + L  N +T + V   C            
Sbjct: 240 LPTLRELHLDNNKL--SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297

Query: 53  HLLLGFNKI--NNMENDYFLTLTKLSLLNLKNNK 84
            + L  N +    ++   F  +T    +   N K
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 23/114 (20%)

Query: 28  SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISE 87
            L  +  S   L  +P      + T L L  N I+ +  D F  L  L  L L NNKIS+
Sbjct: 34  HLRVVQCSDLGLKAVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 88  VSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQD 141
           +                           S L  L+ L++  N +  +  ++   
Sbjct: 93  IHEKA----------------------FSPLRKLQKLYISKNHLVEIPPNLPSS 124

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  104 bits (261), Expect = 5e-26
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 5/144 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
           L HL+ L LS N + +  +  F  + +L  L L  N+LT +P         L  L L  N
Sbjct: 87  LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146

Query: 60  KINNMENDYFLTLTKLSLLNL-KNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSS 117
            I ++ +  F  +  L  L+L +  ++S +S      L NL  L+L+   L ++P  L+ 
Sbjct: 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTP 205

Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
           L  L  L L GN +  +R    Q 
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQG 229

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 99.1 bits (247), Expect = 5e-24
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 5/144 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLG-F 58
           L++L TL+L  N+L +     F+ +  L EL L  N +  +P        +L  L LG  
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSS 117
            +++ +    F  L+ L  LNL    + E+ + +  LI L  LDLS N L+ +       
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQG 229

Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
           L HL+ L++  + I+ +  +   +
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDN 253

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 99.1 bits (247), Expect = 5e-24
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 3/133 (2%)

Query: 2   LSHLKTLDLSH-NKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
           +  L+ LDL    +L   S   F  + +L  LNL+   L  +P  T    L  L L  N 
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH 218

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSSL 118
           ++ +    F  L  L  L +  ++I  +  N   +L +L  ++L+ N LT +P +  + L
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278

Query: 119 FHLKSLFLGGNPI 131
            HL+ + L  NP 
Sbjct: 279 HHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.7 bits (228), Expect = 2e-21
 Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLS-YNQLTMLPVCT--DCKNLTHLLLGF 58
           LS LK L L +N + S     F  + SL  L+L    +L+ +         NL +L L  
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LS 116
             +  +       L KL  L+L  N +S +       L++L  L +  +++  +      
Sbjct: 195 CNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252

Query: 117 SLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
           +L  L  + L  N +  + +D+      +
Sbjct: 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHL 281

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 88.7 bits (220), Expect = 2e-20
 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 5/137 (3%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNK 60
           ++ + L+L  N++    +  F  +R L  L LS N +  + +       NL  L L  N+
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSD-NELTDVPCE-LSS 117
           +  + N  F+ L+KL  L L+NN I  + S     + +L  LDL +   L+ +       
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 118 LFHLKSLFLGGNPIKTV 134
           L +L+ L L    ++ +
Sbjct: 184 LSNLRYLNLAMCNLREI 200

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.6 bits (186), Expect = 8e-16
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 3/117 (2%)

Query: 27  RSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS 86
              +++      L  +P      N   L L  N+I  ++ + F  L  L +L L  N I 
Sbjct: 43  NQFSKVICVRKNLREVPDGIST-NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 87  EVSSNV-GDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQD 141
            +       L NL  L+L DN LT +P      L  LK L+L  NPI+++ +     
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  103 bits (258), Expect = 2e-25
 Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 5/144 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
           L HL+ L L  N +    +  F  + SL  L L  N LT++P         L  L L  N
Sbjct: 98  LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157

Query: 60  KINNMENDYFLTLTKLSLLNL-KNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSS 117
            I ++ +  F  +  L  L+L +  K+  +S      L NL  L+L    + D+P  L+ 
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTP 216

Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
           L  L+ L + GN    +R      
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHG 240

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  100 bits (250), Expect = 2e-24
 Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 5/144 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLG-F 58
           L+ L TL+L  N L       F  +  L EL L  N +  +P        +L  L LG  
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSS 117
            K+  +    F  L  L  LNL    I ++ + +  L+ L  L++S N   ++       
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHG 240

Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
           L  LK L++  + +  +  +    
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDG 264

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  100 bits (250), Expect = 2e-24
 Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 3/133 (2%)

Query: 2   LSHLKTLDLSH-NKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
           +  L  LDL    KL   S   F  + +L  LNL    +  +P  T    L  L +  N 
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH 229

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSSL 118
              +    F  L+ L  L + N+++S +  N    L +L  L+L+ N L+ +P +  + L
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289

Query: 119 FHLKSLFLGGNPI 131
            +L  L L  NP 
Sbjct: 290 RYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.0 bits (234), Expect = 3e-22
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLS-YNQLTMLPVCT--DCKNLTHLLLGF 58
           LS L+ L L +N + S     F  + SL  L+L    +L  +         NL +L LG 
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LS 116
             I +M       L  L  L +  N   E+       L +L  L + +++++ +      
Sbjct: 206 CNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD 263

Query: 117 SLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
            L  L  L L  N + ++ +D+    + +
Sbjct: 264 GLASLVELNLAHNNLSSLPHDLFTPLRYL 292

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 88.7 bits (220), Expect = 2e-20
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 5/137 (3%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNK 60
           S+ + L+L  N +       F  +  L  L L  N +  + V       +L  L L  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSD-NELTDVPCE-LSS 117
           +  + +  F  L+KL  L L+NN I  + S     + +L  LDL +  +L  +       
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 118 LFHLKSLFLGGNPIKTV 134
           LF+LK L LG   IK +
Sbjct: 195 LFNLKYLNLGMCNIKDM 211

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 5e-17
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 27  RSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS 86
              +++  +   L+ +P      N  +L L  N I  ++ D F  L  L +L L  N I 
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 87  EVSSNV-GDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQD 141
           ++       L +L  L+L DN LT +P      L  L+ L+L  NPI+++ +     
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (259), Expect = 2e-25
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 3/139 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
              ++ LD SHN +     P+      LT L L +N LT      +   L  + L +N++
Sbjct: 210 PIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL 266

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
             +    F+ + +L  L + NN++  ++     +  L +LDLS N L  V         L
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRL 326

Query: 122 KSLFLGGNPIKTVRNDILQ 140
           ++L+L  N I T++     
Sbjct: 327 ENLYLDHNSIVTLKLSTHH 345

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 91.9 bits (228), Expect = 2e-21
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
              ++ L +  N +      +F ++  LT L L  N L+ LP  +  +   LT L +  N
Sbjct: 98  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF 119
            +  +E+D F   T L  L L +N+++ V      + +L   ++S N L+     L+   
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLS----TLAIPI 211

Query: 120 HLKSLFLGGNPIKTVRNDILQD 141
            ++ L    N I  VR  +  +
Sbjct: 212 AVEELDASHNSINVVRGPVNVE 233

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 87.3 bits (216), Expect = 1e-19
 Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 26/159 (16%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
            + L+ L LS N+L    L L     SL   N+SYN L+ L +      +  L    N I
Sbjct: 170 TTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLLSTLAIPI---AVEELDASHNSI 223

Query: 62  NNMENDYFLTLTKLSL-------------------LNLKNNKISEVSSNV-GDLINLAIL 101
           N +     + LT L L                   ++L  N++ ++  +    +  L  L
Sbjct: 224 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283

Query: 102 DLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQ 140
            +S+N L  +      +  LK L L  N +  V  +  Q
Sbjct: 284 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ 322

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 80.4 bits (198), Expect = 2e-17
 Identities = 22/144 (15%), Positives = 53/144 (36%), Gaps = 4/144 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
                 + +             I + +   +    + +  LP  +    + +  L L   
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCEL-SS 117
           +I  ++   F     +  L +  N I  +  +V  ++  L +L L  N+L+ +P  +  +
Sbjct: 86  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
              L +L +  N ++ + +D  Q 
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQA 169

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 19/141 (13%), Positives = 43/141 (30%), Gaps = 9/141 (6%)

Query: 10  LSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT-------DCKNLTHLLLGFNKIN 62
             +N          ID     +       + M               N   +    + + 
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64

Query: 63  NMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSSLFH 120
            +      +  ++ LLNL + +I E+ +        +  L +  N +  +P     ++  
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124

Query: 121 LKSLFLGGNPIKTVRNDILQD 141
           L  L L  N + ++   I  +
Sbjct: 125 LTVLVLERNDLSSLPRGIFHN 145

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (250), Expect = 5e-25
 Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 5/157 (3%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT---DCKNLTHLLLG 57
                K + L++NK+             +  L+L  N++  +           L HL L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 58  FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSS 117
           +N I +++        KL  L+L +NK++ +         +  + L +N+L  +   L  
Sbjct: 178 YNFIYDVKGQVVFA--KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF 235

Query: 118 LFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRL 154
             +L+   L GN              + +  +    +
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.7 bits (236), Expect = 6e-23
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 2/143 (1%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
            S ++ LDL  N++ + +         +L  LNL YN +  +        L  L L  NK
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK 202

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           +  M  + F +   ++ ++L+NNK+  +   +    NL   DL  N             +
Sbjct: 203 LAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 121 LKSLFLGGNPIKTVRNDILQDSK 143
            +   +    +K +     ++  
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.4 bits (230), Expect = 4e-22
 Identities = 36/139 (25%), Positives = 52/139 (37%), Gaps = 8/139 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
             ++K LDLS N L   S         L  LNLS N L           L  L L  N +
Sbjct: 33  AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV 92

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP-CELSSLFH 120
             +          +  L+  NN IS VS +         + L++N++T +   +      
Sbjct: 93  QELLV-----GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSR 145

Query: 121 LKSLFLGGNPIKTVRNDIL 139
           ++ L L  N I TV    L
Sbjct: 146 VQYLDLKLNEIDTVNFAEL 164

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.2 bits (214), Expect = 6e-20
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
            +  K   ++ + L      L     ++ EL+LS N L+ +          L  L L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF 119
            +    +    +L+ L  L+L NN + E+        ++  L  ++N ++ V    S   
Sbjct: 69  VLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVS--CSRGQ 120

Query: 120 HLKSLFLGGNPIKTV 134
             K+++L  N I  +
Sbjct: 121 GKKNIYLANNKITML 135

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.7 bits (205), Expect = 1e-18
 Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 7/121 (5%)

Query: 22  LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79
           +  +        ++ + L      +     N+  L L  N ++ +        TKL LLN
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 80  LKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDIL 139
           L +N + E    +  L  L  LDL++N +     EL     +++L    N I  V     
Sbjct: 65  LSSNVLYETLD-LESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNISRVSCSRG 119

Query: 140 Q 140
           Q
Sbjct: 120 Q 120

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 4/129 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFNK 60
              L+ L+L +N +    +   +    L  L+LS N+L  +         +T + L  NK
Sbjct: 168 SDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           +  +E         L   +L+ N     +       N  +  ++   +  +  +      
Sbjct: 226 LVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 121 LKSLFLGGN 129
           + +L   G 
Sbjct: 285 VPTLGHYGA 293

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 95.9 bits (239), Expect = 1e-23
 Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
           L  L TLDLSHN+L   SLP L   + +LT L++S+N+LT LP         L  L L  
Sbjct: 76  LPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCELSS 117
           N++  +         KL  L+L NN ++E+ + + + L NL  L L +N L  +P     
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

Query: 118 LFHLKSLFLGGNP 130
              L   FL GNP
Sbjct: 194 SHLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 92.1 bits (229), Expect = 3e-22
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 5/145 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNK 60
            + L  L+L   +L    L +   +  L  L+LS+NQL  LP +      LT L + FN+
Sbjct: 54  YTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSL 118
           + ++       L +L  L LK N++  +   +      L  L L++N LT++P  L + L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171

Query: 119 FHLKSLFLGGNPIKTVRNDILQDSK 143
            +L +L L  N + T+         
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHL 196

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 85.2 bits (211), Expect = 1e-19
 Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKIN 62
                L LS N L + SL   +    LT+LNL   +LT L V      L  L L  N++ 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 63  NMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSLFH 120
           ++      TL  L++L++  N+++ +       L  L  L L  NEL  +P  L +    
Sbjct: 91  SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 121 LKSLFLGGNPIKTV 134
           L+ L L  N +  +
Sbjct: 150 LEKLSLANNNLTEL 163

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 4/108 (3%)

Query: 28  SLTELNLSYNQLTMLPVCTDC-KNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS 86
           S  E+N     LT LP   D  K+ T L L  N +        +  T+L+ LNL   +++
Sbjct: 11  SHLEVNCDKRNLTALP--PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 87  EVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTV 134
           ++  + G L  L  LDLS N+L  +P    +L  L  L +  N + ++
Sbjct: 69  KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 98.0 bits (244), Expect = 1e-23
 Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 5/136 (3%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT---DCKNLTHLLLG 57
                K + L++NK+             +  L+L  N++  +           L HL L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 58  FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSS 117
           +N I +++        KL  L+L +NK++ +         +  + L +N+L  +   L  
Sbjct: 178 YNFIYDVKGQVVFA--KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF 235

Query: 118 LFHLKSLFLGGNPIKT 133
             +L+   L GN    
Sbjct: 236 SQNLEHFDLRGNGFHC 251

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 90.7 bits (225), Expect = 6e-21
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 2/143 (1%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
            S ++ LDL  N++ + +         +L  LNL YN +  +        L  L L  NK
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK 202

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           +  M  + F +   ++ ++L+NNK+  +   +    NL   DL  N             +
Sbjct: 203 LAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 121 LKSLFLGGNPIKTVRNDILQDSK 143
            +   +    +K +     ++  
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECT 284

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 87.6 bits (217), Expect = 6e-20
 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 8/134 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
             ++K LDLS N L   S         L  LNLS N L           L  L L  N +
Sbjct: 33  AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV 92

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC-ELSSLFH 120
             +          +  L+  NN IS VS +         + L++N++T +   +      
Sbjct: 93  QELLV-----GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSR 145

Query: 121 LKSLFLGGNPIKTV 134
           ++ L L  N I TV
Sbjct: 146 VQYLDLKLNEIDTV 159

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.0 bits (205), Expect = 3e-18
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
            +  K   ++ + L      L     ++ EL+LS N L+ +          L  L L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF 119
            +    +    +L+ L  L+L NN + E+        ++  L  ++N ++ V    S   
Sbjct: 69  VLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVS--CSRGQ 120

Query: 120 HLKSLFLGGNPIKTV 134
             K+++L  N I  +
Sbjct: 121 GKKNIYLANNKITML 135

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.7 bits (194), Expect = 6e-17
 Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 7/121 (5%)

Query: 22  LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN 79
           +  +        ++ + L      +     N+  L L  N ++ +        TKL LLN
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 80  LKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDIL 139
           L +N + E    +  L  L  LDL++N +     EL     +++L    N I  V     
Sbjct: 65  LSSNVLYETLD-LESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNISRVSCSRG 119

Query: 140 Q 140
           Q
Sbjct: 120 Q 120

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 72.6 bits (178), Expect = 9e-15
 Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 5/141 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFNK 60
              L+ L+L +N +    +   +    L  L+LS N+L  +         +T + L  NK
Sbjct: 168 SDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLF 119
           +  +E         L   +L+ N     +       N  +  ++   +  +  +      
Sbjct: 226 LVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 120 HLKSLFLGGNPIKTVRNDILQ 140
                  G    + +      
Sbjct: 285 VPTLGHYGAYCCEDLPAPFAD 305

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 15/151 (9%), Positives = 44/151 (29%), Gaps = 7/151 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
             +L+  DL  N     +L   F   + +  +     +        +C   T    G   
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 61  INNMENDYF-----LTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCEL 115
             ++   +      L   + +LL+ + ++   +     +      +D    +   V  ++
Sbjct: 296 CEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQV 355

Query: 116 -SSLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
                   +L      +    ++  +    +
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.8 bits (239), Expect = 2e-23
 Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 6/154 (3%)

Query: 2   LSHLKTLDLSHNKLVS-DSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
           L  L+ LD  H+ L       +F+ +R+L  L++S+    +    +     +L  L +  
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 59  NK-INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-L 115
           N    N   D F  L  L+ L+L   ++ ++S      L +L +L++S N    +     
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219

Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHI 149
             L  L+ L    N I T +   LQ     ++ +
Sbjct: 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 94.7 bits (236), Expect = 5e-23
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 7/146 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGF 58
            + LK LDLS N +++ S   F+ +  L  L+  ++ L  +    V    +NL +L +  
Sbjct: 77  TTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNK-ISEVSSNV-GDLINLAILDLSDNELTDVPCE-L 115
                  N  F  L+ L +L +  N        ++  +L NL  LDLS  +L  +     
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195

Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQD 141
           +SL  L+ L +  N   ++     + 
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYKC 221

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.8 bits (231), Expect = 2e-22
 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 7/150 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGF 58
           L+ L  L LS N L              SL  L+LS+N +  +       + L HL    
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 110

Query: 59  NKINNM-ENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV--PCE 114
           + +  M E   FL+L  L  L++ +       + +   L +L +L ++ N   +   P  
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQDSKR 144
            + L +L  L L    ++ +          
Sbjct: 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.0 bits (229), Expect = 4e-22
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 6/136 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQ-LTMLP--VCTDCKNLTHLLLGF 58
           L +L  LD+SH         +F  + SL  L ++ N         + T+ +NLT L L  
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LS 116
            ++  +    F +L+ L +LN+ +N    + +     L +L +LD S N +     + L 
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244

Query: 117 SLF-HLKSLFLGGNPI 131
                L  L L  N  
Sbjct: 245 HFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.5 bits (220), Expect = 8e-21
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 9/147 (6%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDC----KNLTHLLLGF 58
           S    L+L  NKL S    +F  +  LT+L+LS N L+    C+       +L +L L F
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV--GDLINLAILDLSDNELTDVPCE-L 115
           N +  M ++ FL L +L  L+ +++ + ++S       L NL  LD+S            
Sbjct: 88  NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 116 SSLFHLKSLFLGGNP-IKTVRNDILQD 141
           + L  L+ L + GN   +    DI  +
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTE 173

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.7 bits (153), Expect = 9e-12
 Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
           L +L  LDLS  +L   S   F  + SL  LN+S+N    L         +L  L    N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 60  KINNMENDYFLTL-TKLSLLNLKNNKIS 86
            I   +        + L+ LNL  N  +
Sbjct: 234 HIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 93.5 bits (233), Expect = 6e-23
 Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 4/141 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L+ L+ L L+ NKL +    +F ++++L  L ++ N+L  LP  V     NL  L L  N
Sbjct: 60  LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SS 117
           ++ ++    F +LTKL+ L+L  N++  +   V D L +L  L L +N+L  VP      
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179

Query: 118 LFHLKSLFLGGNPIKTVRNDI 138
           L  LK+L L  N +K V    
Sbjct: 180 LTELKTLKLDNNQLKRVPEGA 200

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 92.7 bits (231), Expect = 1e-22
 Identities = 52/142 (36%), Positives = 72/142 (50%), Gaps = 4/142 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L +L+TL ++ NKL +  + +F  + +L EL L  NQL  LP  V      LT+L LG+N
Sbjct: 84  LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SS 117
           ++ ++    F  LT L  L L NN++  V     D L  L  L L +N+L  VP     S
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203

Query: 118 LFHLKSLFLGGNPIKTVRNDIL 139
           L  LK L L  NP     N I+
Sbjct: 204 LEKLKMLQLQENPWDCTCNGII 225

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 86.2 bits (214), Expect = 3e-20
 Identities = 46/134 (34%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 5   LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKIN 62
            K LDL  NKL S     F  +  L  L L+ N+L  LP  +  + KNL  L +  NK+ 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 63  NMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSLFH 120
            +    F  L  L+ L L  N++  +   V D L  L  L L  NEL  +P  +   L  
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158

Query: 121 LKSLFLGGNPIKTV 134
           LK L L  N +K V
Sbjct: 159 LKELRLYNNQLKRV 172

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 72.7 bits (179), Expect = 3e-15
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 4/111 (3%)

Query: 28  SLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKI 85
              +L+L  N+L+ LP         L  L L  NK+  +    F  L  L  L + +NK+
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 86  SEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSLFHLKSLFLGGNPIKTV 134
             +   V D L+NLA L L  N+L  +P  +  SL  L  L LG N ++++
Sbjct: 98  QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 7/114 (6%)

Query: 29  LTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS 86
              ++ S  +LT +P  +  D      L L  NK++++ +  F  LTKL LL L +NK+ 
Sbjct: 18  KNSVDCSSKKLTAIPSNIPAD---TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74

Query: 87  EVSSNV-GDLINLAILDLSDNELTDVPCEL-SSLFHLKSLFLGGNPIKTVRNDI 138
            + + +  +L NL  L ++DN+L  +P  +   L +L  L L  N +K++   +
Sbjct: 75  TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV 128

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 96.6 bits (240), Expect = 6e-23
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 14/144 (9%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
            + LK LD+ +N+L    LP       L  +N   NQLTMLP      +L  L +  N++
Sbjct: 119 PASLKHLDVDNNQL--TMLPELP--ALLEYINADNNQLTMLP--ELPTSLEVLSVRNNQL 172

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINL----AILDLSDNELTDVPCELSS 117
             +          L  L++  N +  + +      +           +N +T +P  + S
Sbjct: 173 TFLPE----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILS 228

Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
           L    ++ L  NP+ +   + L  
Sbjct: 229 LDPTCTIILEDNPLSSRIRESLSQ 252

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.5 bits (206), Expect = 2e-18
 Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 15/134 (11%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
           +++    L L+   L   SLP  +    +T L ++ N L  LP      +L +L    N+
Sbjct: 57  LINQFSELQLNRLNL--SSLPDNLP-PQITVLEITQNALISLP--ELPASLEYLDACDNR 111

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           ++ +          L  L++ NN+++ +         L  ++  +N+LT +P        
Sbjct: 112 LSTLPE----LPASLKHLDVDNNQLTMLPELPA---LLEYINADNNQLTMLP---ELPTS 161

Query: 121 LKSLFLGGNPIKTV 134
           L+ L +  N +  +
Sbjct: 162 LEVLSVRNNQLTFL 175

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.0 bits (184), Expect = 1e-15
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 9/131 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
            + L+ ++  +N+L    LP      SL  L++  NQLT LP   +  +L  L +  N +
Sbjct: 139 PALLEYINADNNQLTM--LPELP--TSLEVLSVRNNQLTFLPELPE--SLEALDVSTNLL 192

Query: 62  NNM--ENDYFLTLTKLSL-LNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSL 118
            ++           +  +    + N+I+ +  N+  L     + L DN L+    E  S 
Sbjct: 193 ESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 119 FHLKSLFLGGN 129
              +  + G  
Sbjct: 253 QTAQPDYHGPR 263

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.1 bits (179), Expect = 6e-15
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 13/133 (9%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
                    + N+ VS  L     +   +EL L+   L+ LP       +T L +  N +
Sbjct: 36  WEKQALPGENRNEAVS--LLKECLINQFSELQLNRLNLSSLPD-NLPPQITVLEITQNAL 92

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            ++          L  L+  +N++S +        +L  LD+ +N+LT +P   +    L
Sbjct: 93  ISLPE----LPASLEYLDACDNRLSTLPE---LPASLKHLDVDNNQLTMLPELPAL---L 142

Query: 122 KSLFLGGNPIKTV 134
           + +    N +  +
Sbjct: 143 EYINADNNQLTML 155

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 59.2 bits (143), Expect = 3e-10
 Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 18/142 (12%)

Query: 1   MLSHLKTLDLS----HNKLVSDSLPLFIDMRSLTELNLSYNQ----LTMLPVCTDCKNLT 52
           ML       LS    +N +       F       +  L        +++L  C      +
Sbjct: 4   MLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-INQFS 62

Query: 53  HLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP 112
            L L    ++++ ++      ++++L +  N +  +        +L  LD  DN L+ +P
Sbjct: 63  ELQLNRLNLSSLPDNLP---PQITVLEITQNALISLPELPA---SLEYLDACDNRLSTLP 116

Query: 113 CELSSLFHLKSLFLGGNPIKTV 134
              +S   LK L +  N +  +
Sbjct: 117 ELPAS---LKHLDVDNNQLTML 135

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.8 bits (142), Expect = 4e-10
 Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 8/125 (6%)

Query: 19  SLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNM-ENDYFLTLTKL 75
           S+ L I+       N  YN ++       +         L     N          + + 
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61

Query: 76  SLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVR 135
           S L L    +S +  N+     + +L+++ N L  +P   +S   L+ L    N + T+ 
Sbjct: 62  SELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELPAS---LEYLDACDNRLSTLP 116

Query: 136 NDILQ 140
                
Sbjct: 117 ELPAS 121

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 10/96 (10%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLL--- 56
                       N++    +P  I  +     + L  N L+           T       
Sbjct: 205 SEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSRI-RESLSQQTAQPDYHG 261

Query: 57  ---GFNKINNMENDYFLTLTKLSLLNLKNNKISEVS 89
               F+  +  +N     L          NK S+VS
Sbjct: 262 PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVS 297

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.9 bits (241), Expect = 6e-23
 Identities = 25/152 (16%), Positives = 55/152 (36%), Gaps = 9/152 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
              ++   + +N L        +  M  L  L+  +N++  L        LT L L +N+
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ 606

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEV--SSNVGDLINLAILDLSDNELTDVPCELSS- 117
           I  +  D+     ++  L   +NK+  +    N   +  +  +D S N++      +S  
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 118 -----LFHLKSLFLGGNPIKTVRNDILQDSKR 144
                  +  ++ L  N I+    ++      
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.9 bits (223), Expect = 1e-20
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 17/156 (10%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---------VCTDCKNLT 52
             +  T+ LS+N++      LF     ++ + LS N +T +P            +   LT
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 53  HLLLGFNKINNM-ENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNE---- 107
            + L FNK+ ++ ++    TL  LS +++  N  S   +   +   L    +        
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEG 791

Query: 108 ---LTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQ 140
              L   P  +++   L  L +G N I+ V   +  
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP 827

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 85.7 bits (212), Expect = 4e-19
 Identities = 26/150 (17%), Positives = 57/150 (38%), Gaps = 14/150 (9%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTD-----------CKN 50
           L  L  ++L +   ++       D+  L  LN++ N+                       
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 51  LTHLLLGFNKINNM-ENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELT 109
           +    +G+N +     +     + KL LL+  +NK+  + +  G  + L  L L  N++ 
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIE 608

Query: 110 DVPCEL-SSLFHLKSLFLGGNPIKTVRNDI 138
           ++P +  +    ++ L    N +K + N  
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 80.7 bits (199), Expect = 2e-17
 Identities = 27/176 (15%), Positives = 64/176 (36%), Gaps = 33/176 (18%)

Query: 2   LSHLKTLDLSHNKLVSDSLPL-------------------FIDMRSLTELNLS-YNQLTM 41
           L+ L+ +  +++    D++ +                   + +++ LT++ L     +T 
Sbjct: 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

Query: 42  LPVC-TDCKNLTHLLLGFNKINNMENDY---------FLTLTKLSLLNLKNNKISEVSSN 91
           LP    D   L  L +  N+  +                T  K+ +  +  N + E  ++
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566

Query: 92  V--GDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
                ++ L +LD   N++  +     +   L  L L  N I+ +  D    + ++
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.2 bits (190), Expect = 3e-16
 Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 11/152 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCT-DCKNLTHL----- 54
              L T+DL  NKL S S       +  L+ +++SYN  +  P    +   L        
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786

Query: 55  -LLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC 113
                N+I         T   L  L + +N I +V   +     L ILD++DN    +  
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDV 844

Query: 114 -ELSSLFHLKSLFLGGNPIKTVRNDILQDSKR 144
             +          L  +  + +R       +R
Sbjct: 845 TSVCPYIEAGMYVLLYDKTQDIRGCDALGIER 876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.6 bits (165), Expect = 5e-13
 Identities = 18/143 (12%), Positives = 44/143 (30%), Gaps = 11/143 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTH---LLLGF 58
              +  L L+              +  L  L+   +  T+       + LT         
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSD-------NELTDV 111
               + +  +     +L+L +L  + I+     +  +   + + L D       N +T +
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRN-PEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 112 PCELSSLFHLKSLFLGGNPIKTV 134
              +  L  L+ ++   +P    
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYD 463

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 10/139 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQ---------LTMLPVCTDCKNLT 52
           L+ LK L    +           +  +        ++         L           L 
Sbjct: 346 LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405

Query: 53  HLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP 112
             +    ++  ++ D  ++L    + NL  N+I+ +S  +  L  L I+  +++  T   
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNL-TNRITFISKAIQRLTKLQIIYFANSPFTYDN 464

Query: 113 CELSSLFHLKSLFLGGNPI 131
             +                
Sbjct: 465 IAVDWEDANSDYAKQYENE 483

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 18/173 (10%), Positives = 47/173 (27%), Gaps = 42/173 (24%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFI----------------------------DMRSLTEL 32
               L   DL  + +  +     I                             +  L  +
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII 453

Query: 33  NLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK-NNKISEVSSN 91
             + +  T   +     +       + K    E   +  L  L+ + L     ++++   
Sbjct: 454 YFANSPFTYDNIAV---DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

Query: 92  VGDLINLAILDLSDNELTDVPC----------ELSSLFHLKSLFLGGNPIKTV 134
           + DL  L  L+++ N                 +  +   ++  ++G N ++  
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 93.8 bits (233), Expect = 2e-22
 Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 8/146 (5%)

Query: 3   SHLKTLDLSHNKLVS-DSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
           S+   LDLSHN L    +      + +L  L LS+N L  +         NL +L L  N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVP----CE 114
            ++ ++   F  L  L +L L NN I  V  N   D+  L  L LS N+++  P     +
Sbjct: 99  HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158

Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQ 140
            + L  L  L L  N +K +    LQ
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQ 184

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 91.8 bits (228), Expect = 1e-21
 Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 11/140 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L++L +L LSHN L   S   F+ + +L  L+LS N L  L   + +D + L  LLL  N
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVS----SNVGDLINLAILDLSDNELTDVPCE- 114
            I  ++ + F  + +L  L L  N+IS        +   L  L +LDLS N+L  +P   
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182

Query: 115 ---LSSLFHLKSLFLGGNPI 131
              L +      L+L  NP+
Sbjct: 183 LQKLPAWVKN-GLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 78.7 bits (194), Expect = 4e-17
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 6   KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDC---KNLTHLLLGFNKIN 62
             L  S  +L   ++P  +       L+LS+N L+ L          NL  LLL  N +N
Sbjct: 21  NILSCSKQQL--PNVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 63  NMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSSLFH 120
            + ++ F+ +  L  L+L +N +  +   +  DL  L +L L +N +  V       +  
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137

Query: 121 LKSLFLGGNPIKTVRNDILQD 141
           L+ L+L  N I     ++++D
Sbjct: 138 LQKLYLSQNQISRFPVELIKD 158

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 95.3 bits (237), Expect = 2e-22
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 7/159 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
            S ++ LDLSH  + S +  +F  ++ L  LNL+YN++  +         NL  L L +N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSSL 118
            +  + +  F  L K++ ++L+ N I+ +       L  L  LDL DN LT     +  +
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----IHFI 380

Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYH 157
             +  +FL GN + T+    L  +   +S  +   LD  
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL 419

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 91.4 bits (227), Expect = 4e-21
 Identities = 39/147 (26%), Positives = 57/147 (38%), Gaps = 8/147 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTML---PVCTDCKNLTHLLLGF 58
           L+  + L LS N + + +   F  +  L  L L      +        +  NL  L LG 
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVG---DLINLAILDLSDNELTDVPCE- 114
           +KI  +  D F  L  L  L L    +S+     G   +L  L  LDLS N++  +    
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 115 -LSSLFHLKSLFLGGNPIKTVRNDILQ 140
               L  LKS+    N I  V    L+
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELE 169

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 82.2 bits (203), Expect = 5e-18
 Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 11/146 (7%)

Query: 5   LKTLDLSHNKLVS-DSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGFNK 60
              + LS N+L + D L   + +  L  L L+ N+ +        ++  +L  L LG N 
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 61  INNMEN-----DYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE 114
           +          D F  L+ L +L L +N ++ +   V   L  L  L L+ N LT +   
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS-H 521

Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQ 140
                +L+ L +  N +     D+  
Sbjct: 522 NDLPANLEILDISRNQLLAPNPDVFV 547

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.6 bits (199), Expect = 2e-17
 Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 11/138 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLTMLPVC-------TDCKNLTH 53
           + HL+ L L+ N+  S S      +  SL +L L  N L +               +L  
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484

Query: 54  LLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC 113
           L L  N +N++    F  LT L  L+L +N+++ +S N     NL ILD+S N+L     
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPN- 542

Query: 114 ELSSLFHLKSLFLGGNPI 131
                  L  L +  N  
Sbjct: 543 -PDVFVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.9 bits (192), Expect = 2e-16
 Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 21/159 (13%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
           L +L+ L+LS+N L       F  +  +  ++L  N + ++   T    + L  L L  N
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372

Query: 60  KIN-----------NMENDYFLTLTKLSL----LNLKNNKISEVSSNV--GDLINLAILD 102
            +             +  +  +TL K++L    ++L  N++  +        + +L IL 
Sbjct: 373 ALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432

Query: 103 LSDNELTDVPCE--LSSLFHLKSLFLGGNPIKTVRNDIL 139
           L+ N  +    +   S    L+ LFLG N ++      L
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.9 bits (192), Expect = 2e-16
 Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 15/170 (8%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV----CTDCKNLTHLLLG 57
           L +L+ LDL  +K+       F  +  L EL L +  L+   +      + K LT L L 
Sbjct: 72  LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 58  FNKINNME-NDYFLTLTKLSLLNLKNNKISEVSSNVGD---LINLAILDLSDNELTDVP- 112
            N+I ++  +  F  L  L  ++  +N+I  V  +  +      L+   L+ N L     
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

Query: 113 ------CELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY 156
                         L+ L + GN           ++             +
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.2 bits (190), Expect = 3e-16
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 16/150 (10%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
            L  L+TLDL  N L +        + S+ ++ LS N+L  LP          + L  N+
Sbjct: 360 FLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLP--KINLTANLIHLSENR 412

Query: 61  INNMENDYFLT-LTKLSLLNLKNNKISEVSSNV--GDLINLAILDLSDNELTDVPCE--- 114
           + N++  YFL  +  L +L L  N+ S  S +    +  +L  L L +N L         
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472

Query: 115 ---LSSLFHLKSLFLGGNPIKTVRNDILQD 141
                 L HL+ L+L  N + ++   +   
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.1 bits (182), Expect = 3e-15
 Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 24/168 (14%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLF------IDMRSLTELNLSYNQLTMLPVCTDC------- 48
              L    L+ N L S     +           L  L++S N  T+              
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232

Query: 49  -------KNLTHLLLGFNKINNMENDYFLTLTKLSL--LNLKNNKISEVSSNV-GDLINL 98
                   ++     GF+ I + + + F  L + S+  L+L +  +  ++S V   L +L
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292

Query: 99  AILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
            +L+L+ N++  +  E    L +L+ L L  N +  + +       ++
Sbjct: 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.4 bits (157), Expect = 5e-12
 Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 9/148 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           LSHL+ L L+HN L S    +F  + +L  L+L+ N+LT+L       NL  L +  N++
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
                D F     LS+L++ +NK         +      ++  ++    +    + ++ +
Sbjct: 539 LAPNPDVF---VSLSVLDITHNKFIC------ECELSTFINWLNHTNVTIAGPPADIYCV 589

Query: 122 KSLFLGGNPIKTVRNDILQDSKRIISHI 149
                 G  + ++  +   + + + S  
Sbjct: 590 YPDSFSGVSLFSLSTEGCDEEEVLKSLK 617

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 4/121 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+ L+ L L+ N+L    L       +L  L++S NQL          +L+ L +  NK 
Sbjct: 503 LTALRGLSLNSNRLTV--LSHNDLPANLEILDISRNQLLAPNPDV-FVSLSVLDITHNKF 559

Query: 62  N-NMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
               E   F+     + + +                 +++  LS     +     S  F 
Sbjct: 560 ICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFS 619

Query: 121 L 121
           L
Sbjct: 620 L 620

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 92.0 bits (229), Expect = 2e-22
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 8/137 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGF 58
           LS L+ L      L S        +++L ELN+++N +         ++  NL HL L  
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 59  NKINNMENDYFLTLTKLSL----LNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE 114
           NKI ++       L ++ L    L+L  N ++ +       I L  L L  N+L  VP  
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 218

Query: 115 -LSSLFHLKSLFLGGNP 130
               L  L+ ++L  NP
Sbjct: 219 IFDRLTSLQKIWLHTNP 235

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 90.4 bits (225), Expect = 9e-22
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 5/143 (3%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
              K LDLS N L       F     L  L+LS  ++  +         +L+ L+L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE--LSS 117
           I ++    F  L+ L  L      ++ + +   G L  L  L+++ N +         S+
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 118 LFHLKSLFLGGNPIKTVRNDILQ 140
           L +L+ L L  N I+++    L+
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLR 170

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 87.3 bits (217), Expect = 1e-20
 Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 15/152 (9%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLG 57
              L+ LDLS  ++   ++    +  +  L+ L L+ N +  L +       +L  L+  
Sbjct: 51  FPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 58  FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVG---DLINLAILDLSDNELTDVPCE 114
              + ++EN     L  L  LN+ +N I           +L NL  LDLS N++  + C 
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 115 -LSSLFHLK----SLFLGGNPIKTVRNDILQD 141
            L  L  +     SL L  NP+  ++    ++
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 87.3 bits (217), Expect = 1e-20
 Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 8/148 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           LSHL TL L+ N + S +L  F  + SL +L      L  L        K L  L +  N
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 60  KINNME-NDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAI----LDLSDNELTDVPC 113
            I + +  +YF  LT L  L+L +NKI  +       L  + +    LDLS N +  +  
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 114 ELSSLFHLKSLFLGGNPIKTVRNDILQD 141
                  LK L L  N +K+V + I   
Sbjct: 195 GAFKEIRLKELALDTNQLKSVPDGIFDR 222

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.8 bits (236), Expect = 3e-22
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 5/143 (3%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
              K LDLS N L       F     L  L+LS  ++  +         +L+ L+L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV--PCELSS 117
           I ++    F  L+ L  L      ++ + +   G L  L  L+++ N +     P   S+
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 118 LFHLKSLFLGGNPIKTVRNDILQ 140
           L +L+ L L  N I+++    L+
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLR 170

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 92.1 bits (229), Expect = 2e-21
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 6/136 (4%)

Query: 2   LSHLKTLDLSHNKLVS-DSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
           L  L+ LD  H+ L       +F+ +R+L  L++S+    +    +     +L  L +  
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 59  NKI-NNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-L 115
           N    N   D F  L  L+ L+L   ++ ++S      L +L +L+++ N+L  VP    
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514

Query: 116 SSLFHLKSLFLGGNPI 131
             L  L+ ++L  NP 
Sbjct: 515 DRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 90.9 bits (226), Expect = 5e-21
 Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 9/149 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
              L+ LDLS  ++ +     +  +  L+ L L+ N +  L     +   +L  L+    
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDVPCE-LS 116
            + ++EN     L  L  LN+ +N I          +L NL  LDLS N++  + C  L 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 117 SLFHLK----SLFLGGNPIKTVRNDILQD 141
            L  +     SL L  NP+  ++    ++
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.2 bits (219), Expect = 4e-20
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 7/145 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGF 58
            + LK LDLS N +++ S   F+ +  L  L+  ++ L  +    V    +NL +L +  
Sbjct: 372 TTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV--GDLINLAILDLSDNELTDVPCE-L 115
                  N  F  L+ L +L +  N   E        +L NL  LDLS  +L  +     
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQ 140
           +SL  L+ L +  N +K+V + I  
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDGIFD 515

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.3 bits (214), Expect = 2e-19
 Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 7/147 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGF 58
           L  L+ LDLS N L              SL  L+LS+N +  +       + L HL    
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405

Query: 59  NKINNMENDY-FLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV--PCE 114
           + +  M     FL+L  L  L++ +       + +   L +L +L ++ N   +   P  
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQD 141
            + L +L  L L    ++ +       
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNS 492

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.9 bits (213), Expect = 3e-19
 Identities = 41/140 (29%), Positives = 57/140 (40%), Gaps = 8/140 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
           LSHL TL L+ N + S +L  F  + SL +L      L  L        K L  L +  N
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 60  KINNME-NDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAI----LDLSDNELTDVPC 113
            I + +  +YF  LT L  L+L +NKI  +       L  + +    LDLS N +  +  
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 114 ELSSLFHLKSLFLGGNPIKT 133
                  L  L L  N    
Sbjct: 195 GAFKEIRLHKLTLRNNFDSL 214

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.4 bits (209), Expect = 8e-19
 Identities = 31/144 (21%), Positives = 51/144 (35%), Gaps = 7/144 (4%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
                + L+L + K         + ++SL  L  + N+        D  +L  L L  N 
Sbjct: 302 YNFGWQHLELVNCKFGQFP---TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 61  INNME--NDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP--CELS 116
           ++     +      T L  L+L  N +  +SSN   L  L  LD   + L  +       
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 117 SLFHLKSLFLGGNPIKTVRNDILQ 140
           SL +L  L +     +   N I  
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFN 442

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.5 bits (199), Expect = 2e-17
 Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 9/144 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT---DCKNLTHLLLGF 58
           LS L+ L      L S        +++L ELN+++N +    +     +  NL HL L  
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 59  NKINNMENDYFLTLTKLSL----LNLKNNKISEVSSNVGDLINLAILDLSDNELT--DVP 112
           NKI ++       L ++ L    L+L  N ++ +       I L  L L +N  +   + 
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 113 CELSSLFHLKSLFLGGNPIKTVRN 136
             +  L  L+   L     +   N
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGN 242

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 8/141 (5%)

Query: 4   HLKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKIN 62
            ++   L++     D +  LF  + +++  +L    +  +   +      HL L   K  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 63  NMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV---PCELSSLF 119
                  L L  L  L   +NK     S V  L +L  LDLS N L+             
Sbjct: 318 QFP---TLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 120 HLKSLFLGGNPIKTVRNDILQ 140
            LK L L  N + T+ ++ L 
Sbjct: 374 SLKYLDLSFNGVITMSSNFLG 394

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
           LS L+ L ++ N    + LP +F ++R+LT L+LS  QL  L         +L  L +  
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKIS 86
           N++ ++ +  F  LT L  + L  N   
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 16/164 (9%)

Query: 5   LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHL------LLGF 58
             +LDLS N +       F ++  L +L L  N  ++  + T  + L  L      L  F
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-------LINLAILDLSDNELTDV 111
               N+E      L  L  L ++  +++ +   + D       L N++   L    +  V
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 112 PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRI-ISHIKTSRL 154
             + S  F  + L L            L+  KR+  +  K    
Sbjct: 298 K-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 92.2 bits (230), Expect = 5e-22
 Identities = 34/133 (25%), Positives = 69/133 (51%), Gaps = 5/133 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+ + +L+L  N  +SD  PL  +M  L  L ++ +++  +    +  +L  L L +N+I
Sbjct: 131 LTKMYSLNLGANHNLSDLSPLS-NMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQI 189

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            ++      +LT L       N+I+++ + V ++  L  L + +N++TD+   L++L  L
Sbjct: 190 EDISP--LASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNKITDLS-PLANLSQL 245

Query: 122 KSLFLGGNPIKTV 134
             L +G N I  +
Sbjct: 246 TWLEIGTNQISDI 258

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.4 bits (228), Expect = 1e-21
 Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 6/136 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+ L       N++    +    +M  L  L +  N++T L    +   LT L +G N+I
Sbjct: 198 LTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI 255

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV-PCELSSLFH 120
           +++       LTKL +LN+ +N+IS++ S + +L  L  L L++N+L +     +  L +
Sbjct: 256 SDINA--VKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312

Query: 121 LKSLFLGGNPIKTVRN 136
           L +LFL  N I  +R 
Sbjct: 313 LTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.1 bits (227), Expect = 2e-21
 Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 5/133 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L  +  L ++  K+   S+     + +L  LNL+ NQ+T +   ++   LT+L +G NKI
Sbjct: 43  LESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI 100

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            ++       LT L  L L  + IS++ S + +L  +  L+L  N        LS++  L
Sbjct: 101 TDISA--LQNLTNLRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGL 157

Query: 122 KSLFLGGNPIKTV 134
             L +  + +K V
Sbjct: 158 NYLTVTESKVKDV 170

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 90.3 bits (225), Expect = 2e-21
 Identities = 32/133 (24%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           ++ L  L ++ +K+    +    ++  L  L+L+YNQ+  +       +L +     N+I
Sbjct: 154 MTGLNYLTVTESKV--KDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQI 211

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            ++       +T+L+ L + NNKI+++ S + +L  L  L++  N+++D+   +  L  L
Sbjct: 212 TDITP--VANMTRLNSLKIGNNKITDL-SPLANLSQLTWLEIGTNQISDIN-AVKDLTKL 267

Query: 122 KSLFLGGNPIKTV 134
           K L +G N I  +
Sbjct: 268 KMLNVGSNQISDI 280

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 89.5 bits (223), Expect = 5e-21
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 6/132 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           ++ L +L + +NK+    L    ++  LT L +  NQ++ +    D   L  L +G N+I
Sbjct: 220 MTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQI 277

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVS-SNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           +++       L++L+ L L NN++       +G L NL  L LS N +TD+   L+SL  
Sbjct: 278 SDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSK 334

Query: 121 LKSLFLGGNPIK 132
           + S       IK
Sbjct: 335 MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 87.2 bits (217), Expect = 4e-20
 Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 7/136 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFN-K 60
           L  L  L +  NK+    +    ++ +L EL L+ + ++ +    +   +  L LG N  
Sbjct: 87  LVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHN 144

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           ++++       +T L+ L +  +K+ +V+  + +L +L  L L+ N++ D+   L+SL  
Sbjct: 145 LSDLSP--LSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDIS-PLASLTS 200

Query: 121 LKSLFLGGNPIKTVRN 136
           L       N I  +  
Sbjct: 201 LHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.8 bits (216), Expect = 5e-20
 Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 6/140 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+ L +L L++N++    +     + SL       NQ+T +    +   L  L +G NKI
Sbjct: 176 LTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI 233

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            ++       L++L+ L +  N+IS++++ V DL  L +L++  N+++D+   L++L  L
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDIS-VLNNLSQL 289

Query: 122 KSLFLGGNPIKTVRNDILQD 141
            SLFL  N +     +++  
Sbjct: 290 NSLFLNNNQLGNEDMEVIGG 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.1 bits (214), Expect = 8e-20
 Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 6/133 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+      L    +    +    ++ S+T+L ++  ++  +       NL +L L  N+I
Sbjct: 21  LAEGIRAVLQKASV--TDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI 78

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            ++       L KL+ L +  NKI+++S+ + +L NL  L L+++ ++D+   L++L  +
Sbjct: 79  TDISP--LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDIS-PLANLTKM 134

Query: 122 KSLFLGGNPIKTV 134
            SL LG N   + 
Sbjct: 135 YSLNLGANHNLSD 147

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 6/132 (4%)

Query: 5   LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNM 64
             TL      + +   P   D+       L    +T +    + +++T L++   K+ ++
Sbjct: 2   AATLATLPAPI-NQIFPD-ADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASI 59

Query: 65  ENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSL 124
           +      LT L  LNL  N+I+++ S + +L+ L  L +  N++TD+   L +L +L+ L
Sbjct: 60  QG--IEYLTNLEYLNLNGNQITDI-SPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115

Query: 125 FLGGNPIKTVRN 136
           +L  + I  +  
Sbjct: 116 YLNEDNISDISP 127

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFN 59
           L+ LK L++  N++    + +  ++  L  L L+ NQL    +       NLT L L  N
Sbjct: 264 LTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISE 87
            I ++      +L+K+   +  N  I +
Sbjct: 322 HITDIRP--LASLSKMDSADFANQVIKK 347

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 93.3 bits (232), Expect = 6e-22
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
           S +KT DLS +K+ +    +F     L +L L+ N++  +         +L  L L  N 
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCE-LSSL 118
           + ++++  F  L KL +L+L  N I  +       L NL  L L  N+L  VP      L
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394

Query: 119 FHLKSLFLGGNP 130
             L+ ++L  NP
Sbjct: 395 TSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 84.4 bits (209), Expect = 6e-19
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 8/146 (5%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGFN 59
           +H+  +DLS N +   +   F  ++ L  L +      ++          +L  L L +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVG---DLINLAILDLSDNELTDVPCE-- 114
           +   +E   F  L  L +L L    +     +      L +L +L L DN +  +     
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQ 140
             ++     L L  N +K++  + L 
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLL 175

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 81.3 bits (201), Expect = 9e-18
 Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 16/154 (10%)

Query: 2   LSHLKTLDLSHNKLVSDSLP------------LFIDMRSLTELNLSYNQLTMLP--VCTD 47
            + +++L LS++  +  S                ++   +   +LS +++  L   V + 
Sbjct: 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297

Query: 48  CKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDN 106
             +L  L L  N+IN ++++ F  LT L  LNL  N +  + S + + L  L +LDLS N
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357

Query: 107 ELTDVPCEL-SSLFHLKSLFLGGNPIKTVRNDIL 139
            +  +  +    L +LK L L  N +K+V + I 
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 78.2 bits (193), Expect = 9e-17
 Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 20/206 (9%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDC----KNLTHLLLG 57
           LS L  L L +N+ +      F  + +L  L L+   L    +  +      +L  L+L 
Sbjct: 78  LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137

Query: 58  FNKINNMEND-YFLTLTKLSLLNLKNNKISEVSSNVGD-----------LINLAILDLSD 105
            N I  ++   +FL + +  +L+L  NK+  +                 L ++ + D+++
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197

Query: 106 NELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGG 164
             L    C        + +L L GN  K        D+   I+  K   L        G 
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA---IAGTKIQSLILSNSYNMGS 254

Query: 165 GMSSQESTSEINIDKYKLDRTKTLTL 190
                      N     L+ +   T 
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTC 280

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.5 bits (191), Expect = 2e-16
 Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 12/154 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG 57
           L  L+ L +         +    F  + SL  L L YNQ   L         NL  L L 
Sbjct: 53  LQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111

Query: 58  FNKINNM--ENDYFLTLTKLSLLNLKNNKISEVSSNVGD--LINLAILDLSDNELTDVPC 113
              ++      ++F  LT L +L L++N I ++        +    +LDL+ N++  +  
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171

Query: 114 E-LSSL--FHLKSLFLGGNPIKTVRNDILQDSKR 144
           E L +    H   L L    ++ +    L   K 
Sbjct: 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.6 bits (186), Expect = 8e-16
 Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 19/158 (12%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTEL-------------NLSYNQLTMLPVCT-- 46
            + + TLDLS N         F D  + T++             +  +         T  
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 47  --DCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDL 103
             +   +    L  +KI  +    F   T L  L L  N+I+++  N    L +L  L+L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330

Query: 104 SDNELTDVPCEL-SSLFHLKSLFLGGNPIKTVRNDILQ 140
           S N L  +   +  +L  L+ L L  N I+ + +    
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL 368

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 19/158 (12%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV---------------CT 46
           LS +   D++   L  +         S+T L+LS N                        
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 47  DCKNLTHLLLGFNKINNMENDYF--LTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDL 103
                     G     + +N  F  L  + +   +L  +KI  +  +V     +L  L L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306

Query: 104 SDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQ 140
           + NE+  +       L HL  L L  N + ++ + + +
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.3 bits (149), Expect = 4e-11
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L+HL  L+LS N L S    +F ++  L  L+LSYN +  L         NL  L L  N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381

Query: 60  KINNMENDYFLTLTKLSLLNLKNN 83
           ++ ++ +  F  LT L  + L  N
Sbjct: 382 QLKSVPDGIFDRLTSLQKIWLHTN 405

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.5 bits (233), Expect = 7e-22
 Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 6/150 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
            S L +LD+  N +      L   +  L  LNL +N+L+ L       C NLT L L  N
Sbjct: 48  YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSSL 118
            I  ++N+ F+    L  L+L +N +S         L NL  L LS+N++  +  E   +
Sbjct: 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167

Query: 119 FH---LKSLFLGGNPIKTVRNDILQDSKRI 145
           F    LK L L  N IK           R+
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRL 197

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.4 bits (230), Expect = 2e-21
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 4/143 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
            +++  L+L+HN+L       F     LT L++ +N ++ L   +C     L  L L  N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSS 117
           +++ + +  F   T L+ L+L +N I ++ +N      NL  LDLS N L+         
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 118 LFHLKSLFLGGNPIKTVRNDILQ 140
           L +L+ L L  N I+ ++++ L 
Sbjct: 144 LENLQELLLSNNKIQALKSEELD 166

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.0 bits (229), Expect = 3e-21
 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 14/158 (8%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTD----CKNLTHLLLG 57
           L ++  + LS+NK +  +   F  + SL  L L    L  +          +NLT L L 
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488

Query: 58  FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV---------GDLINLAILDLSDNEL 108
            N I N+ +D    L KL +L+L++N ++ +  +            L +L IL+L  N  
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548

Query: 109 TDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
            ++       LF LK + LG N + T+   +  +   +
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 91.6 bits (228), Expect = 3e-21
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 6/136 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L  LK L+L HN+L   S   F    +LTEL+L  N +  +        KNL  L L  N
Sbjct: 72  LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSN---VGDLINLAILDLSDNELTDV-PCEL 115
            +++ +    + L  L  L L NNKI  + S    +    +L  L+LS N++ +  P   
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 116 SSLFHLKSLFLGGNPI 131
            ++  L  LFL    +
Sbjct: 192 HAIGRLFGLFLNNVQL 207

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 14/171 (8%)

Query: 2   LSHLKTLDLSHNKL--VSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG 57
           +  L+ L L    L  V  S   F  +R+LT L+LS N +  +   +    + L  L L 
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512

Query: 58  FNKINNMENDY--------FLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNEL 108
            N +  +               L+ L +LNL++N   E+   V  DL  L I+DL  N L
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572

Query: 109 TDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC 158
             +     ++   LKSL L  N I +V   +   + R ++ +      + C
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.4 bits (217), Expect = 9e-20
 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGF 58
            S L  L+L+ NK+       F  +  L  L+L  N++            +N+  + L +
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVG---DLINLAILDLSDNELTDVPCE- 114
           NK   +  + F  +  L  L L+   +  V S+      L NL ILDLS+N + ++  + 
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQDS 142
           L  L  L+ L L  N +  +        
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGG 527

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.0 bits (216), Expect = 1e-19
 Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 11/147 (7%)

Query: 5   LKTLDLSHNKL--VSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNK 60
            +  D SH KL  V D LP      ++T LNL++NQL  LP         LT L +GFN 
Sbjct: 6   HEVADCSHLKLTQVPDDLP-----TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV-PCELSSL 118
           I+ +E +    L  L +LNL++N++S++S        NL  L L  N +  +        
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRI 145
            +L +L L  N + + +       + +
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENL 147

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 17/156 (10%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLG-- 57
            ++L  LDLS+N L       F  +  L    L YN +  L   +     N+ +L L   
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 58  -------FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELT 109
                     +  +++  F  L  L  LN+++N I  + SN+   LINL  L LS++  +
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 110 DVPCELSSLFH-----LKSLFLGGNPIKTVRNDILQ 140
                  +        L  L L  N I  + +D   
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 11/151 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP----VCTDCKNLTHLLLG 57
             +L TLDLSHN L S  L   + + +L EL LS N++  L           +L  L L 
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 58  FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV----GDLINLAILDLSDNELTDVPC 113
            N+I       F  + +L  L L N ++    +          ++  L LS+++L+    
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 114 ELSS---LFHLKSLFLGGNPIKTVRNDILQD 141
                    +L  L L  N +  V ND    
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 9/149 (6%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
           +        +S   L       F  ++ L  LN+  N +  +   + T   NL +L L  
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 59  NKIN--NMENDYF--LTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV-- 111
           +  +   + N+ F  L  + L +LNL  NKIS++ S+    L +L +LDL  NE+     
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 112 PCELSSLFHLKSLFLGGNPIKTVRNDILQ 140
             E   L ++  ++L  N    +  +   
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFA 451

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 28  SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISE 87
           S    + S+ +LT +P      N+T L L  N++  +    F   ++L+ L++  N IS+
Sbjct: 5   SHEVADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 88  VSSNV-GDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
           +   +   L  L +L+L  NEL+ +  +  +   +L  L L  N I+ ++N+     K +
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 146 IS 147
           I+
Sbjct: 124 IT 125

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           LSHL  L+L  N      + +F D+  L  ++L  N L  LP  V  +  +L  L L  N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594

Query: 60  KINNMENDYFLT-LTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP 112
            I ++E   F      L+ L+++ N       ++   +N   ++ +   + ++ 
Sbjct: 595 LITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN--WINETHTNIPELS 646

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 13/121 (10%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT---DCKNLTHLLLGF 58
           L  LK +DL  N L +    +F +  SL  LNL  N +T +         +NLT L + F
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 59  NKIN-NMENDYFLTLTKLSLLNLKNNKISEVSSNV-----GDLINLAILDLSDNELTDVP 112
           N  +   E+  +     ++ +N  +  I E+SS+             +     +   D  
Sbjct: 619 NPFDCTCESIAWF----VNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSA 674

Query: 113 C 113
            
Sbjct: 675 H 675

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 92.8 bits (231), Expect = 1e-21
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 5/143 (3%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
           S  K +DLS N L       F +   L  L+LS  ++  +         +L++L+L  N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV--PCELSS 117
           I +     F  LT L  L     K++ + S   G LI L  L+++ N +     P   S+
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 118 LFHLKSLFLGGNPIKTVRNDILQ 140
           L +L  + L  N I+T+  + LQ
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQ 174

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 92.0 bits (229), Expect = 2e-21
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
            S L+ LDLS  ++ +     +  +  L+ L L+ N +        +   +L +L+    
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDVPCE-LS 116
           K+ ++E+     L  L  LN+ +N I      +   +L NL  +DLS N +  +    L 
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 117 SLFHLK----SLFLGGNPIKTVRNDILQDSK 143
            L        SL +  NPI  +++   Q  K
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 205

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.1 bits (224), Expect = 9e-21
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 5/135 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGF 58
           L  L  LD+S+     D   +F+ + SL  L ++ N         V  +  NLT L L  
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVP-CELS 116
            ++  +    F TL +L LLN+ +N +  + S+    L +L+ LD S N +         
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542

Query: 117 SLFHLKSLFLGGNPI 131
               L    L  N +
Sbjct: 543 FPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.8 bits (218), Expect = 6e-20
 Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 7/149 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC---TDCKNLTHLLLGF 58
            + L+ LDLS N  +  S   F+ +  L  L+  ++ L  +         + L +L + +
Sbjct: 375 TNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEV--SSNVGDLINLAILDLSDNELTDVPCE-L 115
                  +  FL LT L+ L +  N   +   S+   +  NL  LDLS  +L  +     
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493

Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQDSKR 144
            +L  L+ L +  N +  + +        
Sbjct: 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.0 bits (216), Expect = 1e-19
 Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 11/163 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
           L HL  L L+ N + S S   F  + SL  L     +L  L          L  L +  N
Sbjct: 79  LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138

Query: 60  KINNME-NDYFLTLTKLSLLNLKNNKISEVSSNVGDL-----INLAILDLSDNELTDVPC 113
            I++ +   YF  LT L  ++L  N I  ++ N              LD+S N +  +  
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198

Query: 114 ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY 156
           +      L  L L GN   +   +I++   + ++ +   RL  
Sbjct: 199 QAFQGIKLHELTLRGNFNSS---NIMKTCLQNLAGLHVHRLIL 238

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 86.6 bits (215), Expect = 2e-19
 Identities = 31/136 (22%), Positives = 48/136 (35%), Gaps = 8/136 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+++  + L+   +    L           L++   QL   P   D   L  L L  NK 
Sbjct: 284 LANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFP-TLDLPFLKSLTLTMNKG 340

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD---LINLAILDLSDNELTDVPCELSSL 118
           +       + L  LS L+L  N +S             +L  LDLS N    +      L
Sbjct: 341 SISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGL 398

Query: 119 FHLKSLFLGGNPIKTV 134
             L+ L    + +K V
Sbjct: 399 EELQHLDFQHSTLKRV 414

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.5 bits (212), Expect = 3e-19
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 7/143 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
               ++L +   +L        +D+  L  L L+ N+ ++        +L++L L  N +
Sbjct: 306 HFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNAL 362

Query: 62  NNMENDYF--LTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP--CELSS 117
           +      +  L    L  L+L  N    +S+N   L  L  LD   + L  V       S
Sbjct: 363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422

Query: 118 LFHLKSLFLGGNPIKTVRNDILQ 140
           L  L  L +     K   + I  
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFL 445

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDM--RSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGF 58
           L  L  LDLS N L       + D+   SL  L+LS+N   ++       + L HL    
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408

Query: 59  NKINNM-ENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV--PCE 114
           + +  + E   FL+L KL  L++           +   L +L  L ++ N   D      
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQDSKR 144
            ++  +L  L L    ++ +   +     R
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.5 bits (199), Expect = 2e-17
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 7/139 (5%)

Query: 4   HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINN 63
            +    L++    SD +  F  + +++ ++L+   +  L           L +   ++  
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ 321

Query: 64  MENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC---ELSSLFH 120
                 L L  L  L L  NK S     V  L +L+ LDLS N L+   C          
Sbjct: 322 FP---TLDLPFLKSLTLTMNKGSISFKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 121 LKSLFLGGNPIKTVRNDIL 139
           L+ L L  N    +  + +
Sbjct: 378 LRHLDLSFNGAIIMSANFM 396

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 11/135 (8%)

Query: 6   KTLDLSHNKLVS--DSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNKI 61
            T      KL    D +P      S   ++LS+N L +L   +  +   L  L L   +I
Sbjct: 14  ITYQCMDQKLSKVPDDIP-----SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI 68

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSSLF 119
             +E+  +  L  LS L L  N I   S      L +L  L   + +L  +    +  L 
Sbjct: 69  ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128

Query: 120 HLKSLFLGGNPIKTV 134
            LK L +  N I + 
Sbjct: 129 TLKKLNVAHNFIHSC 143

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
            ++L  LDLS  +L   S  +F  +  L  LN+S+N L  L         +L+ L   FN
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKIS 86
           +I   +         L+  NL NN ++
Sbjct: 532 RIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 14/146 (9%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHL------ 54
                 +LD+S N +       F  +  L EL L  N  +   + T  +NL  L      
Sbjct: 179 NPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237

Query: 55  ---LLGFNKINNMENDYFLTLTKLSLLNL---KNNKISEVSSNVGDLINLAILDLSDNEL 108
                    +   E      L  +++        N  S+       L N++ + L+   +
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297

Query: 109 TDVPCELSSLFHLKSLFLGGNPIKTV 134
             +  ++   F  +SL +    +K  
Sbjct: 298 KYLE-DVPKHFKWQSLSIIRCQLKQF 322

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 19/114 (16%), Positives = 45/114 (39%), Gaps = 3/114 (2%)

Query: 30  TELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVS 89
                   +L+ +P      +  ++ L FN +  +++  F   ++L  L+L   +I  + 
Sbjct: 14  ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 90  SNV-GDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQD 141
                 L +L+ L L+ N +        S L  L++L      + ++ +  +  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 15/152 (9%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMR--------SLTELNLSYNQLTMLPVCT--DCKNL 51
           L+ L    L   +   +      +          ++ E  L+Y       +       N+
Sbjct: 228 LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287

Query: 52  THLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV 111
           + + L    I  +E+       K   L++   ++ +  +   DL  L  L L+ N+ +  
Sbjct: 288 SAMSLAGVSIKYLEDVPKHF--KWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSIS 343

Query: 112 PCELSSLFHLKSLFLGGNPIKTVRNDILQDSK 143
             +  +L  L  L L  N +         D  
Sbjct: 344 F-KKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.6 bits (230), Expect = 1e-21
 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 13/139 (9%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
            S L+ L +S N+L S  LP       L +L    N+LT LP       L  L++  N++
Sbjct: 180 PSGLQELSVSDNQLAS--LPTLPS--ELYKLWAYNNRLTSLP--ALPSGLKELIVSGNRL 233

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            ++        ++L  L +  N+++ +         L  L +  N+LT +P  L  L   
Sbjct: 234 TSLPV----LPSELKELMVSGNRLTSLPMLPS---GLLSLSVYRNQLTRLPESLIHLSSE 286

Query: 122 KSLFLGGNPIKTVRNDILQ 140
            ++ L GNP+       L+
Sbjct: 287 TTVNLEGNPLSERTLQALR 305

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.0 bits (205), Expect = 3e-18
 Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 18/140 (12%)

Query: 2   LSHLKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
              L+TL++S N+L S  LP L   +  L+  +     L  LP       L  L +  N+
Sbjct: 80  PPELRTLEVSGNQLTS--LPVLPPGLLELSIFSNPLTHLPALP-----SGLCKLWIFGNQ 132

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           + ++          L  L++ +N+++ + +   +L  L      +N+LT +P   S    
Sbjct: 133 LTSLPVL----PPGLQELSVSDNQLASLPALPSELCKL---WAYNNQLTSLPMLPSG--- 182

Query: 121 LKSLFLGGNPIKTVRNDILQ 140
           L+ L +  N + ++     +
Sbjct: 183 LQELSVSDNQLASLPTLPSE 202

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 82.6 bits (204), Expect = 3e-18
 Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 18/138 (13%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFNK 60
            +H+ TL +  N L S  LP       L  L +S NQLT LPV       L+        
Sbjct: 60  PAHITTLVIPDNNLTS--LPALP--PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH 115

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           +  +        + L  L +  N+++ +         L  L +SDN+L  +P   S    
Sbjct: 116 LPAL-------PSGLCKLWIFGNQLTSLPVLPP---GLQELSVSDNQLASLPALPS---E 162

Query: 121 LKSLFLGGNPIKTVRNDI 138
           L  L+   N + ++    
Sbjct: 163 LCKLWAYNNQLTSLPMLP 180

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 80.7 bits (199), Expect = 2e-17
 Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 12/139 (8%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
            S L  L   +N+L S  LP       L EL +S N+LT LP       L  L++  N++
Sbjct: 200 PSELYKLWAYNNRLTS--LPALP--SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRL 253

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            ++        + L  L++  N+++ +  ++  L +   ++L  N L++   +      +
Sbjct: 254 TSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR--EI 307

Query: 122 KSLFLGGNPIKTVRNDILQ 140
            S      PI         
Sbjct: 308 TSAPGYSGPIIRFDMAGAS 326

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.2 bits (195), Expect = 5e-17
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 15/138 (10%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
           + +    L++  + L   +LP  +    +T L +  N LT LP       L  L +  N+
Sbjct: 38  LNNGNAVLNVGESGL--TTLPDCL-PAHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQ 92

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           + ++       L +LS+ +     +  +         L  L +  N+LT +P        
Sbjct: 93  LTSLPVL-PPGLLELSIFSNPLTHLPAL------PSGLCKLWIFGNQLTSLPVLPPG--- 142

Query: 121 LKSLFLGGNPIKTVRNDI 138
           L+ L +  N + ++    
Sbjct: 143 LQELSVSDNQLASLPALP 160

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.1 bits (143), Expect = 3e-10
 Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 5/124 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFNK 60
            S LK L +S N+L   SLP+      L  L++  NQLT LP       + T + L  N 
Sbjct: 240 PSELKELMVSGNRL--TSLPMLPS--GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           ++         +T     +    +     ++         L  +D  +     E +    
Sbjct: 296 LSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355

Query: 121 LKSL 124
               
Sbjct: 356 WHMF 359

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.4 bits (230), Expect = 2e-21
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 8/153 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGF 58
           LSHL++L+LS+N+ +S     F +   L  L+L++ +L +        +   L  L L  
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEV----SSNVGDLINLAILDLSDNELTDVP-C 113
           + ++      F  L  L  LNL+ N   +     ++++  L  L IL LS  +L+ +   
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

Query: 114 ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRII 146
             +SL  +  + L  N + +   + L   K I 
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY 527

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.0 bits (229), Expect = 2e-21
 Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 6/147 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L +L  LDL+  ++       F     L  L L+ N L  +     +  K L HL     
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSS 117
            I++++         L  L L +N IS +          L +LD  +N +  +  E +SS
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175

Query: 118 LFHLKSLFL--GGNPIKTVRNDILQDS 142
           L    +L L   GN I  +       +
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSA 202

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 91.6 bits (228), Expect = 3e-21
 Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
              L TL L+ N L+  +       ++L  L      ++ +      + K L  L LG N
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAI--LDLSDNELTDVPCELS 116
            I++++        KL +L+ +NN I  +S      L       L+L+ N++  +     
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199

Query: 117 SLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY 156
                +SL  GG     V    L++S   I  +     + 
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNST--IQSLWLGTFED 237

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.8 bits (226), Expect = 6e-21
 Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 6/150 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFNK 60
              +++++L  +   + S   F     L EL+L+   L+ LP        L  L+L  NK
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK 312

Query: 61  INNMENDYFLTLTKLSLLNLKNNKI--SEVSSNVGDLINLAILDLSDNELTDVPC---EL 115
             N+          L+ L++K N       +  + +L NL  LDLS +++    C   +L
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
            +L HL+SL L  N   +++ +  ++  ++
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 89.7 bits (223), Expect = 2e-20
 Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 4/144 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
            +  + L+ S N L +     F  + +LT L+L+  Q+  +          L  L+L  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPC-ELSS 117
            +  M          L  L      IS +      +   L  L L  N ++ +   +   
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 118 LFHLKSLFLGGNPIKTVRNDILQD 141
              LK L    N I  +  + +  
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSS 175

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.8 bits (218), Expect = 7e-20
 Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 7/146 (4%)

Query: 2   LSHLKTLDLSHNKLVS-DSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
              L+ LDL+  +L   D+   F ++  L  LNLS++ L +    +      L HL L  
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 59  NKI---NNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE 114
           N     N  + +   TL +L +L L    +S +  +    L  +  +DLS N LT    E
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQ 140
             S      L L  N I  +   +L 
Sbjct: 519 ALSHLKGIYLNLASNHISIILPSLLP 544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.0 bits (216), Expect = 1e-19
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 6/136 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-----MLPVCTDCKNLTHLLL 56
           L  LK L+LSH+ L   S  LF  + +L  LNL  N                  L  L+L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 57  GFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-L 115
            F  +++++   F +L  ++ ++L +N+++  S      +    L+L+ N ++ +    L
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLL 543

Query: 116 SSLFHLKSLFLGGNPI 131
             L   +++ L  NP+
Sbjct: 544 PILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.5 bits (212), Expect = 5e-19
 Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 8/148 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQL-TMLPVCT--DCKNLTHLLLGF 58
           LS LK L LS NK  +       +  SLT L++  N     L      + +NL  L L  
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 59  NKINNME--NDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE- 114
           + I   +  N     L+ L  LNL  N+   + +    +   L +LDL+   L     + 
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

Query: 115 -LSSLFHLKSLFLGGNPIKTVRNDILQD 141
              +L  LK L L  + +      +   
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDG 447

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.1 bits (211), Expect = 5e-19
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 11/146 (7%)

Query: 6   KTLDLSHNKL--VSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNKI 61
           KT +  +  L  +  +LP      S   L  S+N L  +   T     NLT L L   +I
Sbjct: 15  KTYNCENLGLNEIPGTLP-----NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV-PCELSSLF 119
             +  D F +  +L  L L  N +  ++         L  L      ++ +    L +  
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129

Query: 120 HLKSLFLGGNPIKTVRNDILQDSKRI 145
            L+SL+LG N I +++      ++++
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKL 155

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.8 bits (200), Expect = 1e-17
 Identities = 23/139 (16%), Positives = 50/139 (35%), Gaps = 7/139 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCTDCK----NLTHLL 55
            +  ++L+    + +           ++SL            +           ++  + 
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 56  LGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE- 114
           L  +   N+ ++ F   + L  L+L    +SE+ S +  L  L  L LS N+  ++    
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS 320

Query: 115 LSSLFHLKSLFLGGNPIKT 133
            S+   L  L + GN  + 
Sbjct: 321 ASNFPSLTHLSIKGNTKRL 339

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 76.2 bits (188), Expect = 5e-16
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 8/144 (5%)

Query: 4   HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC----TDCKNLTHLLLGFN 59
              +L+L+ N +     P   D      LN    Q  ++       +  ++L        
Sbjct: 180 TNLSLNLNGNDIAGIE-PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 60  KINNMENDYFLTLTKLSL--LNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELS 116
              ++    F  L ++S+  +NL+ +    +SSN       L  LDL+   L+++P  L 
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV 298

Query: 117 SLFHLKSLFLGGNPIKTVRNDILQ 140
            L  LK L L  N  + +      
Sbjct: 299 GLSTLKKLVLSANKFENLCQISAS 322

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 9/148 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTH--LLLG 57
              L++L L  N + S  LP       L  L+   N +  L     +  +  T+  L L 
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187

Query: 58  FNKINNMENDYF--LTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCEL 115
            N I  +E   F       L+    +N  +         + +L +    D +  D+   +
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 116 ---SSLFHLKSLFLGGNPIKTVRNDILQ 140
                   ++S+ L  +    + ++   
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFH 275

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.7 bits (179), Expect = 7e-15
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 7/114 (6%)

Query: 2   LSHLKTLDLSHNKLVS---DSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLL 56
           L  L+ L+L  N               +  L  L LS+  L+ +        K + H+ L
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 57  GFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELT 109
             N++ +   +    L  +  LNL +N IS +  ++   L     ++L  N L 
Sbjct: 508 SHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.1 bits (228), Expect = 2e-21
 Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 6/135 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
            +     +L    +         ++ S+ ++  + + +  +       N+T L L  NK+
Sbjct: 20  FAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 77

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            +++      L  L  L L  NKI ++ S++ DL  L  L L  N ++D+   L  L  L
Sbjct: 78  TDIKP--LTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDING-LVHLPQL 133

Query: 122 KSLFLGGNPIKTVRN 136
           +SL+LG N I  +  
Sbjct: 134 ESLYLGNNKITDITV 148

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.7 bits (188), Expect = 4e-16
 Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 5   LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNM 64
           +         +    +          + NL    +T      +  ++  ++   + I ++
Sbjct: 1   MGETITVSTPI--KQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV 58

Query: 65  ENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSL 124
           +      L  ++ L L  NK++++   + +L NL  L L +N++ D+   L  L  LKSL
Sbjct: 59  QG--IQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSL 114

Query: 125 FLGGNPIKTVRN 136
            L  N I  +  
Sbjct: 115 SLEHNGISDING 126

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.4 bits (177), Expect = 1e-14
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L  LK+L L HN +    +   + +  L  L L  N++T + V +    L  L L  N+I
Sbjct: 108 LKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI 165

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTD-VPCELSSLFH 120
           +++       LTKL  L L  N IS++   +  L NL +L+L   E  +      S+L  
Sbjct: 166 SDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 121 LKSL 124
             ++
Sbjct: 223 PNTV 226

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.4 bits (143), Expect = 2e-10
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 4/115 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+ L TL L  N++    +     +  L  L LS N ++ L      KNL  L L   + 
Sbjct: 152 LTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 209

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDVPCE 114
            N   ++   L   + +   +  +      S+ GD     +         +V   
Sbjct: 210 LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 264

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 87.8 bits (218), Expect = 4e-21
 Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 4/129 (3%)

Query: 6   KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINN 63
             + L  N +       F   + L  ++LS NQ++ L        ++L  L+L  NKI  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 64  MENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCE-LSSLFHL 121
           +    F  L  L LL L  NKI+ +  +    L NL +L L DN+L  +     S L  +
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154

Query: 122 KSLFLGGNP 130
           +++ L  NP
Sbjct: 155 QTMHLAQNP 163

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 5/126 (3%)

Query: 28  SLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKI 85
           ++TE+ L  N + ++P    +  K L  + L  N+I+ +  D F  L  L+ L L  NKI
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 86  SEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSLFHLKSLFLGGNPIKTVRNDILQDSK 143
           +E+  ++ + L +L +L L+ N++  +  +    L +L  L L  N ++T+         
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF-SPL 151

Query: 144 RIISHI 149
           R I  +
Sbjct: 152 RAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG 57
           L  L +L L  NK+    LP  LF  + SL  L L+ N++  L      D  NL  L L 
Sbjct: 79  LRSLNSLVLYGNKIT--ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136

Query: 58  FNKINNMENDYFLTLTKLSLLNLKNN 83
            NK+  +    F  L  +  ++L  N
Sbjct: 137 DNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 89.4 bits (222), Expect = 1e-20
 Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 8/147 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
              ++ L +    L  D   ++  +  +  + +  +++ ++P       K+L  L L  N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344

Query: 60  KINNM---ENDYFLTLTKLSLLNLKNNKISEVSSNVG---DLINLAILDLSDNELTDVPC 113
            +       +        L  L L  N +  +         L NL  LD+S N    +P 
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404

Query: 114 ELSSLFHLKSLFLGGNPIKTVRNDILQ 140
                  ++ L L    I+ V+  I Q
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKTCIPQ 431

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 89.4 bits (222), Expect = 2e-20
 Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 6/144 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHL----LLG 57
           L  L+ LDLS N L S S   F  + SL  LNL  N    L V +   NLT+L    +  
Sbjct: 73  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132

Query: 58  FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVP-CEL 115
               + +    F  LT L+ L +K   +    S     + ++  L L  +E   +     
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192

Query: 116 SSLFHLKSLFLGGNPIKTVRNDIL 139
             L  ++ L L    +   +   L
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPL 216

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.5 bits (217), Expect = 8e-20
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 13/140 (9%)

Query: 2   LSHLKTLDLSHNKLVSDSLP---LFIDMRSLTELNLSYNQLTMLP----VCTDCKNLTHL 54
           L  L+ LDLS N +V + L          SL  L LS N L  +     +    KNLT L
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392

Query: 55  LLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE 114
            +  N  + M +       K+  LNL +  I  V + +     L +LD+S+N L      
Sbjct: 393 DISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS-- 447

Query: 115 LSSLFHLKSLFLGGNPIKTV 134
              L  L+ L++  N +KT+
Sbjct: 448 -LFLPRLQELYISRNKLKTL 466

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.9 bits (213), Expect = 3e-19
 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 10/147 (6%)

Query: 2   LSHLKTLDLSHNKL--VSDSLPLFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGF 58
              L+TL LS N L  +  +  + + +++LT L++S N    +P  C   + +  L L  
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS 419

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSL 118
             I  ++         L +L++ NN +   S     L  L  L +S N+L  +P + S  
Sbjct: 420 TGIRVVKTCIP---QTLEVLDVSNNNLDSFSLF---LPRLQELYISRNKLKTLP-DASLF 472

Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRI 145
             L  + +  N +K+V + I      +
Sbjct: 473 PVLLVMKISRNQLKSVPDGIFDRLTSL 499

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.4 bits (209), Expect = 8e-19
 Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 6/145 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
            ++L+ L L  +++ +     F  + SL  L+LS N L+ L         +L +L L  N
Sbjct: 49  CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108

Query: 60  KINNM-ENDYFLTLTKLSLLNL-KNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-L 115
               +     F  LT L  L +      SE+       L +L  L++    L +   + L
Sbjct: 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168

Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQ 140
            S+  +  L L  +    +      
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFAD 193

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.0 bits (208), Expect = 1e-18
 Identities = 30/146 (20%), Positives = 61/146 (41%), Gaps = 6/146 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
            + +K+LDLS NK+            +L  L L  +++  +         +L HL L  N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSN--VGDLINLAILDLSD-NELTDVPCE-L 115
            ++++ + +F  L+ L  LNL  N    +       +L NL  L + +    +++     
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQD 141
           + L  L  L +    ++  ++  L+ 
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKS 170

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 13/150 (8%)

Query: 3   SHLKTLDLSHNKLVS--DSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
                 D       S    L       ++  L+LS+N++T +       C NL  L+L  
Sbjct: 5   DASGVCDGRSRSFTSIPSGLT-----AAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVP--CEL 115
           ++IN +E D F +L  L  L+L +N +S +SS+  G L +L  L+L  N    +      
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 116 SSLFHLKSLFLGG-NPIKTVRNDILQDSKR 144
            +L +L++L +G       +R         
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.1 bits (164), Expect = 6e-13
 Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
              ++ L+LS   +      +    ++L  L++S N L    +      L  L +  NK+
Sbjct: 409 PEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNNNLDSFSLFL--PRLQELYISRNKL 463

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDN 106
             + +        L ++ +  N++  V   +   L +L  + L  N
Sbjct: 464 KTLPDASLFP--VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.0 bits (156), Expect = 8e-12
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
              L+ LD+S+N L S      + +  L EL +S N+L  LP  +    L  + +  N++
Sbjct: 430 PQTLEVLDVSNNNLDS----FSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQL 485

Query: 62  NNMENDYFLTLTKLSLLNLKNNKI 85
            ++ +  F  LT L  + L  N  
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 19/161 (11%), Positives = 46/161 (28%), Gaps = 22/161 (13%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           +  +  L L  ++           + S+  L L    L           +  + +     
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

Query: 60  KINNMENDYFLTLTKL----------SLLNLKNNKISEVSSNVGD---------LINLAI 100
           + + + ++ F  L KL             +   N + + + +  D          + +  
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290

Query: 101 LDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQ 140
           L +    L        S L  +K + +  + +  V     Q
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 8e-07
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L  L+ L +S NKL   +LP       L  + +S NQL  +P  +     +L  + L  N
Sbjct: 450 LPRLQELYISRNKL--KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

Query: 60  KIN 62
             +
Sbjct: 508 PWD 510

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.9 bits (218), Expect = 2e-20
 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 6/145 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
             +L+ L L+ N + +     F  + SL  L+LSYN L+ L         +LT L L  N
Sbjct: 75  CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134

Query: 60  KINNM-ENDYFLTLTKLSLLNLKNN-KISEVSSNV-GDLINLAILDLSDNELTDVPCE-L 115
               + E   F  LTKL +L + N    +++       L  L  L++  ++L     + L
Sbjct: 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194

Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQ 140
            S+ ++  L L       +    + 
Sbjct: 195 KSIQNVSHLILHMKQHILLLEIFVD 219

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 2e-17
 Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 6/144 (4%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
             +K+LDLS+N++   S        +L  L L+ N +  +     +   +L HL L +N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNE-LTDVPCE-LS 116
           ++N+ + +F  L+ L+ LNL  N    +   S    L  L IL + + +  T +  +  +
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 117 SLFHLKSLFLGGNPIKTVRNDILQ 140
            L  L+ L +  + +++     L+
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLK 195

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 2e-17
 Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 11/140 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L+ L+ L++  + L S        +++++ L L   Q  +L         ++  L L   
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 60  KINNM--------ENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV 111
            ++          E +  +       + + +  + +V   +  +  L  L+ S N+L  V
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292

Query: 112 PCE-LSSLFHLKSLFLGGNP 130
           P      L  L+ ++L  NP
Sbjct: 293 PDGIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 2e-17
 Identities = 27/181 (14%), Positives = 58/181 (32%), Gaps = 37/181 (20%)

Query: 2   LSHLKTLDLSHNKLVS------------------------DSLP--LFIDMRSLTELNLS 35
           LS L  L+L  N   +                          +    F  +  L EL + 
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 36  YNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISE------ 87
            + L           +N++HL+L   +   +   +    + +  L L++  +        
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242

Query: 88  ---VSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKR 144
               ++++        + ++D  L  V   L+ +  L  L    N +K+V + I      
Sbjct: 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTS 302

Query: 145 I 145
           +
Sbjct: 303 L 303

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.6 bits (194), Expect = 5e-17
 Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 6/140 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHL----LLG 57
           L  L+ LDLS+N L + S   F  + SLT LNL  N    L   +   +LT L    +  
Sbjct: 99  LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 58  FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCEL- 115
            +    ++   F  LT L  L +  + +          + N++ L L   +   +     
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV 218

Query: 116 SSLFHLKSLFLGGNPIKTVR 135
                ++ L L    + T  
Sbjct: 219 DVTSSVECLELRDTDLDTFH 238

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 73  TKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCEL-SSLFHLKSLFLGGNP 130
             +  L+L NN+I+ +S++     +NL  L L+ N +  +  +  SSL  L+ L L  N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 131 IKTVRNDILQD 141
           +  + +   + 
Sbjct: 112 LSNLSSSWFKP 122

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 88.1 bits (219), Expect = 4e-20
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 6/135 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L++L  L L+ N+L    +     + +LT+L+L+ NQ++ L   +    LT L LG N+I
Sbjct: 220 LTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 277

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
           +N+       LT L+ L L  N++ ++ S + +L NL  L L  N ++D+   +SSL  L
Sbjct: 278 SNISP--LAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDIS-PVSSLTKL 333

Query: 122 KSLFLGGNPIKTVRN 136
           + LF   N +  V +
Sbjct: 334 QRLFFYNNKVSDVSS 348

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 85.0 bits (211), Expect = 4e-19
 Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 6/133 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L++L++L  ++N++    +     + +L EL+L+ NQL  +       NLT L L  N+I
Sbjct: 198 LTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 255

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
           +N+       LTKL+ L L  N+IS + S +  L  L  L+L++N+L D+   +S+L +L
Sbjct: 256 SNLAP--LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDIS-PISNLKNL 311

Query: 122 KSLFLGGNPIKTV 134
             L L  N I  +
Sbjct: 312 TYLTLYFNNISDI 324

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 6/135 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+      L    +         D+  +T L      +  +       NLT +    N++
Sbjct: 23  LAEKMKTVLGKTNV--TDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 80

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            ++       LTKL  + + NN+I+++ + + +L NL  L L +N++TD+   L +L +L
Sbjct: 81  TDITP--LKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFNNQITDID-PLKNLTNL 136

Query: 122 KSLFLGGNPIKTVRN 136
             L L  N I  +  
Sbjct: 137 NRLELSSNTISDISA 151

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 6/131 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L  + TL      +   S+     + +LT++N S NQLT +    +   L  +L+  N+I
Sbjct: 45  LDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 102

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            ++       LT L+ L L NN+I+++   + +L NL  L+LS N ++D+   LS L  L
Sbjct: 103 ADITP--LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDIS-ALSGLTSL 158

Query: 122 KSLFLGGNPIK 132
           + L  G     
Sbjct: 159 QQLSFGNQVTD 169

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.3 bits (204), Expect = 4e-18
 Identities = 36/133 (27%), Positives = 71/133 (53%), Gaps = 7/133 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L++L  L L +N++    +    ++ +L  L LS N ++ +   +   +L  L  G N++
Sbjct: 111 LTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQV 167

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            +++      LT L  L++ +NK+S++ S +  L NL  L  ++N+++D+   L  L +L
Sbjct: 168 TDLKP--LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT-PLGILTNL 223

Query: 122 KSLFLGGNPIKTV 134
             L L GN +K +
Sbjct: 224 DELSLNGNQLKDI 236

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.5 bits (202), Expect = 7e-18
 Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 7/133 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+ L+ L   +       L    ++ +L  L++S N+++ + V     NL  L+   N+I
Sbjct: 155 LTSLQQLSFGNQVT---DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI 211

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
           +++       LT L  L+L  N++ ++ + +  L NL  LDL++N+++++   LS L  L
Sbjct: 212 SDITP--LGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLA-PLSGLTKL 267

Query: 122 KSLFLGGNPIKTV 134
             L LG N I  +
Sbjct: 268 TELKLGANQISNI 280

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 28/137 (20%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+ L  L+L+ N+L  + +    ++++LT L L +N ++ +   +    L  L    NK+
Sbjct: 286 LTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV 343

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
           +++ +     LT ++ L+  +N+IS++ + + +L  +  L L+D   T+ P    +   +
Sbjct: 344 SDVSS--LANLTNINWLSAGHNQISDL-TPLANLTRITQLGLNDQAWTNAPVNYKANVSI 400

Query: 122 KSLFLGGNPIKTVRNDI 138
            +              I
Sbjct: 401 PNTVKNVTGALIAPATI 417

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.7 bits (179), Expect = 7e-15
 Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 4/131 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L +L  L L  N +    +     +  L  L    N+++ +    +  N+  L  G N+I
Sbjct: 308 LKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQI 365

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
           +++       LT+++ L L +   +    N    +++     +       P  +S     
Sbjct: 366 SDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSY 423

Query: 122 KSLFLGGNPIK 132
               +  N   
Sbjct: 424 TEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 17/111 (15%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+ L+ L   +NK+    +    ++ ++  L+  +NQ++ L    +   +T L L     
Sbjct: 330 LTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAW 387

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP 112
            N   +Y   ++  + +      +    + + D  +    D++ N  +   
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGALIA-PATISDGGSYTEPDITWNLPSYTN 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 28  SLTELNLSY-NQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS 86
            L    ++    +  +   T        +LG   + +  +     L +++ L      I 
Sbjct: 2   PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK 59

Query: 87  EVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTV 134
            +   V  L NL  ++ S+N+LTD+   L +L  L  + +  N I  +
Sbjct: 60  SI-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI 105

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 86.3 bits (214), Expect = 5e-20
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 6/135 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+ +  L+LS N L   ++     ++S+  L+L+  Q+T +       NL  L L  N+I
Sbjct: 84  LTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQI 141

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            N+       LT L  L++ N ++S+++  + +L  L  L   DN+++D+   L+SL +L
Sbjct: 142 TNISP--LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDIS-PLASLPNL 197

Query: 122 KSLFLGGNPIKTVRN 136
             + L  N I  V  
Sbjct: 198 IEVHLKNNQISDVSP 212

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.9 bits (213), Expect = 7e-20
 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 6/135 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L  + TL      +   ++     + +L  L L  NQ+T L    +   +T L L  N +
Sbjct: 40  LDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL 97

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            N+       L  +  L+L + +I++V + +  L NL +L L  N++T++   L+ L +L
Sbjct: 98  KNVSA--IAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNIS-PLAGLTNL 153

Query: 122 KSLFLGGNPIKTVRN 136
           + L +G   +  +  
Sbjct: 154 QYLSIGNAQVSDLTP 168

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.8 bits (205), Expect = 1e-18
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 6/135 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L++   +    + +         D+  +T L+     +T +       NL  L L  N+I
Sbjct: 18  LANAIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            ++       LTK++ L L  N +  V S +  L ++  LDL+  ++TDV   L+ L +L
Sbjct: 76  TDLAP--LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVT-PLAGLSNL 131

Query: 122 KSLFLGGNPIKTVRN 136
           + L+L  N I  +  
Sbjct: 132 QVLYLDLNQITNISP 146

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 1e-14
 Identities = 33/128 (25%), Positives = 67/128 (52%), Gaps = 5/128 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           LS+L+ L L  N++ +  +     + +L  L++   Q++ L    +   LT L    NKI
Sbjct: 128 LSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
           +++      +L  L  ++LKNN+IS+V S + +  NL I+ L++  +T+ P   ++   +
Sbjct: 186 SDISP--LASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQPVFYNNNLVV 242

Query: 122 KSLFLGGN 129
            ++  G +
Sbjct: 243 PNVVKGPS 250

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 4/124 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           LS L TL    NK+    +     + +L E++L  NQ++ +    +  NL  + L    I
Sbjct: 172 LSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDVPCELSSLF 119
            N    Y   L   +++   +      +  S+ G   +  +     + + +V    +   
Sbjct: 230 TNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSV 289

Query: 120 HLKS 123
             K+
Sbjct: 290 TFKN 293

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.5 bits (215), Expect = 5e-20
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 13/139 (9%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVC-TDCKNLTHL-LLGF 58
           LSHL+ + +    L+   LP  +     L  L L+ N L  LP        L  L +   
Sbjct: 103 LSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160

Query: 59  NKI--------NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTD 110
            ++        +   +     L  L  L L+   I  + +++ +L NL  L + ++ L+ 
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA 220

Query: 111 VPCELSSLFHLKSLFLGGN 129
           +   +  L  L+ L L G 
Sbjct: 221 LGPAIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 13/141 (9%)

Query: 2   LSHLKTLDLSH-NKLVS--------DSLPLFIDMRSLTELNLSYNQLTMLPVC-TDCKNL 51
           L+ L+ L +    +L          D+      + +L  L L +  +  LP    + +NL
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNL 208

Query: 52  THLLLGFNKINNMENDYFLTLTKLSLLNL-KNNKISEVSSNVGDLINLAILDLSD-NELT 109
             L +  + ++ +       L KL  L+L     +       G    L  L L D + L 
Sbjct: 209 KSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 110 DVPCELSSLFHLKSLFLGGNP 130
            +P ++  L  L+ L L G  
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.6 bits (171), Expect = 6e-14
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 13/145 (8%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFN 59
            ++ +    +   L + +  L          L L    L   P       +L H+ +   
Sbjct: 55  SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA 114

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSD-NELTDVPCELSS- 117
            +  + +        L  L L  N +  + +++  L  L  L +    ELT++P  L+S 
Sbjct: 115 GLMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 118 --------LFHLKSLFLGGNPIKTV 134
                   L +L+SL L    I+++
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSL 198

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 17/141 (12%), Positives = 41/141 (29%), Gaps = 9/141 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
            S  + L    +  +    P    +        +              N  +  +     
Sbjct: 11  SSGRENLYFQGSTALR---PYHDVLSQWQRHYNADRNRWHSA--WRQANSNNPQIETRTG 65

Query: 62  NNMEND----YFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSS 117
             ++         T      L L++  + +       L +L  + +    L ++P  +  
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQ 125

Query: 118 LFHLKSLFLGGNPIKTVRNDI 138
              L++L L  NP++ +   I
Sbjct: 126 FAGLETLTLARNPLRALPASI 146

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 16/123 (13%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSY-NQLTMLPVC-TDCKNLTHL-LLG 57
           L +LK+L + ++ L +  L   I  +  L EL+L     L   P        L  L L  
Sbjct: 205 LQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 58  FNKI----NNMENDYFLTLTKLSLLNLKNN-KISEVSSNVGDLINLAILDLSDNELTDVP 112
            + +     ++       LT+L  L+L+    +S + S +  L    I+ +  +    + 
Sbjct: 263 CSNLLTLPLDIHR-----LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

Query: 113 CEL 115
              
Sbjct: 318 QHR 320

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.5 bits (212), Expect = 7e-20
 Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 6/135 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L ++  L L+ NKL    +    ++++L  L L  N++  L    D K L  L L  N I
Sbjct: 67  LPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
           +++     + L +L  L L NNKI++++  +  L  L  L L DN+++D+   L+ L  L
Sbjct: 125 SDING--LVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIV-PLAGLTKL 180

Query: 122 KSLFLGGNPIKTVRN 136
           ++L+L  N I  +R 
Sbjct: 181 QNLYLSKNHISDLRA 195

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.7 bits (210), Expect = 1e-19
 Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 6/135 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+ +  +  +++ +   S+     + ++T+L L+ N+LT +    + KNL  L L  NK+
Sbjct: 45  LNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV 102

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            ++ +     L KL  L+L++N IS+++  +  L  L  L L +N++TD+   LS L  L
Sbjct: 103 KDLSS--LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITV-LSRLTKL 158

Query: 122 KSLFLGGNPIKTVRN 136
            +L L  N I  +  
Sbjct: 159 DTLSLEDNQISDIVP 173

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.7 bits (210), Expect = 2e-19
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 6/135 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
            +     +L    +         ++ S+ ++  + + +  +       N+T L L  NK+
Sbjct: 23  FAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 80

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            +++      L  L  L L  NK+ ++ S++ DL  L  L L  N ++D+   L  L  L
Sbjct: 81  TDIKP--LANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQL 136

Query: 122 KSLFLGGNPIKTVRN 136
           +SL+LG N I  +  
Sbjct: 137 ESLYLGNNKITDITV 151

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.5 bits (168), Expect = 9e-14
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L  LK+L L HN +    +   + +  L  L L  N++T + V +    L  L L  N+I
Sbjct: 111 LKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI 168

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP-CELSSLFH 120
           +++       LTKL  L L  N IS++   +  L NL +L+L   E  + P    S+L  
Sbjct: 169 SDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVV 225

Query: 121 LKSL 124
             ++
Sbjct: 226 PNTV 229

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 4/112 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+ L TL L  N++    +     +  L  L LS N ++ L      KNL  L L   + 
Sbjct: 155 LTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 212

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDV 111
            N   ++   L   + +   +  +      S+ GD     +         +V
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 264

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 30  TELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVS 89
           +E       +  +             L    + +        L  +  +   N+ I  V 
Sbjct: 5   SETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV- 61

Query: 90  SNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRN 136
             +  L N+  L L+ N+LTD+   L++L +L  LFL  N +K + +
Sbjct: 62  QGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSS 107

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 84.3 bits (209), Expect = 7e-20
 Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 5/130 (3%)

Query: 6   KTLDLSHNKLVS-DSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKIN 62
             L L++N+    ++  +F  +  L ++N S N++T +          +  +LL  N++ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 63  NMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCE-LSSLFH 120
           N+++  F  L  L  L L++N+I+ V ++    L ++ +L L DN++T V      +L  
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154

Query: 121 LKSLFLGGNP 130
           L +L L  NP
Sbjct: 155 LSTLNLLANP 164

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 70.5 bits (173), Expect = 7e-15
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 8/134 (5%)

Query: 6   KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGFNKIN 62
            T+D S+ KL  + +P  I  +   EL L+ N+ T+L    +      L  +    NKI 
Sbjct: 14  TTVDCSNQKL--NKIPEHIP-QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT 70

Query: 63  NMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSLFH 120
           ++E   F   + ++ + L +N++  V   +   L +L  L L  N +T V  +    L  
Sbjct: 71  DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130

Query: 121 LKSLFLGGNPIKTV 134
           ++ L L  N I TV
Sbjct: 131 VRLLSLYDNQITTV 144

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG 57
            S +  + L+ N+L   ++   +F  + SL  L L  N++T +         ++  L L 
Sbjct: 80  ASGVNEILLTSNRLE--NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137

Query: 58  FNKINNMENDYFLTLTKLSLLNLKNN 83
            N+I  +    F TL  LS LNL  N
Sbjct: 138 DNQITTVAPGAFDTLHSLSTLNLLAN 163

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.0 bits (216), Expect = 1e-19
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
              L+ LDLS  ++ +     +  +  L+ L L+ N +  L     +   +L  L+    
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEV--SSNVGDLINLAILDLSDNELTDVPCE-LS 116
            + ++EN     L  L  LN+ +N I          +L NL  LDLS N++  + C  L 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 117 SLFHLK----SLFLGGNPIKTVRNDILQDSK 143
            L  +     SL L  NP+  ++    ++ +
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.9 bits (213), Expect = 3e-19
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 5/143 (3%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
              K LDLS N L       F     L  L+LS  ++  +         +L+ L+L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV--PCELSS 117
           I ++    F  L+ L  L      ++ + +   G L  L  L+++ N +     P   S+
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 118 LFHLKSLFLGGNPIKTVRNDILQ 140
           L +L+ L L  N I+++    L+
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLR 170

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.1 bits (211), Expect = 5e-19
 Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 6/163 (3%)

Query: 2   LSHLKTLDLSHNKLVS-DSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
           L  L+ LD  H+ L       +F+ +R+L  L++S+    +    +     +L  L +  
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 59  NKIN-NMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV-PCEL 115
           N    N   D F  L  L+ L+L   ++ ++S      L +L +L++S N    +     
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 116 SSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC 158
             L  L+ L    N I T +   LQ     ++ +  ++ D+ C
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 11/163 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
           LSHL TL L+ N + S +L  F  + SL +L      L  L        K L  L +  N
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 60  KINNME-NDYFLTLTKLSLLNLKNNKISEVS-SNVGDLINLAI----LDLSDNELTDVPC 113
            I + +  +YF  LT L  L+L +NKI  +  +++  L  + +    LDLS N +  +  
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 114 ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY 156
                  L  L L  N       ++++   + ++ ++  RL  
Sbjct: 195 GAFKEIRLHKLTLRNNFDSL---NVMKTCIQGLAGLEVHRLVL 234

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 9/144 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT---DCKNLTHLLLGF 58
           LS L+ L      L S        +++L ELN+++N +    +     +  NL HL L  
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 59  NKINNMENDYFLTLTKLSL----LNLKNNKISEVSSNVGDLINLAILDLSDNELTD--VP 112
           NKI ++       L ++ L    L+L  N ++ +       I L  L L +N  +   + 
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 113 CELSSLFHLKSLFLGGNPIKTVRN 136
             +  L  L+   L     +   N
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGN 242

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.2 bits (188), Expect = 5e-16
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 10/139 (7%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTD----CKNLTHLLL 56
            L  LK L  + NK    +    +D+ SL  L+LS N L+    C+       +L +L L
Sbjct: 323 KLKSLKRLTFTSNKG--GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 57  GFNKINNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDV-PC 113
            FN +  M ++ FL L +L  L+ +++ + ++S  S    L NL  LD+S          
Sbjct: 381 SFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 114 ELSSLFHLKSLFLGGNPIK 132
             + L  L+ L + GN  +
Sbjct: 440 IFNGLSSLEVLKMAGNSFQ 458

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.5 bits (186), Expect = 9e-16
 Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 8/136 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+++ +  L    +  + +  F        L L   +    P     K+L  L    NK 
Sbjct: 281 LTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTFTSNKG 337

Query: 62  NNMENDYFLTLTKLSLLNLKNNKIS---EVSSNVGDLINLAILDLSDNELTDVPCELSSL 118
            N  +   + L  L  L+L  N +S     S +     +L  LDLS N +  +      L
Sbjct: 338 GNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 119 FHLKSLFLGGNPIKTV 134
             L+ L    + +K +
Sbjct: 396 EQLEHLDFQHSNLKQM 411

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 7/133 (5%)

Query: 6   KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNKINN 63
            T            +P  +   S   L+LS+N L  L   +      L  L L   +I  
Sbjct: 10  ITYQCMELNF--YKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 64  MENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-LSSLFHL 121
           +E+  + +L+ LS L L  N I  ++      L +L  L   +  L  +    +  L  L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 122 KSLFLGGNPIKTV 134
           K L +  N I++ 
Sbjct: 127 KELNVAHNLIQSF 139

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.8 bits (179), Expect = 7e-15
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 7/143 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
               + L+L + K         + ++SL  L  + N+        D  +L  L L  N +
Sbjct: 303 NFGWQHLELVNCKF---GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359

Query: 62  NNME--NDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV--PCELSS 117
           +     +      T L  L+L  N +  +SSN   L  L  LD   + L  +       S
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 118 LFHLKSLFLGGNPIKTVRNDILQ 140
           L +L  L +     +   N I  
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFN 442

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 13/147 (8%)

Query: 2   LSHLKTLDLSHNKL------VSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLL 55
           L  L  L +   +L      + D + LF  + +++  +L    +  +   +      HL 
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 56  LGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC-- 113
           L   K          +L +L+  + K         +  DL +L  LDLS N L+   C  
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNA----FSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 114 -ELSSLFHLKSLFLGGNPIKTVRNDIL 139
                   LK L L  N + T+ ++ L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFL 393

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 15/155 (9%)

Query: 4   HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHL--------- 54
              +LDLS N +       F ++R L +L L  N  ++  + T  + L  L         
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 55  LLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV----GDLINLAILDLSDNELTD 110
                 +   +      L  L++   +   +     ++      L N++   L    +  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 111 VPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRI 145
           V  + S  F  + L L            L+  KR+
Sbjct: 297 VK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.0 bits (216), Expect = 1e-19
 Identities = 30/156 (19%), Positives = 66/156 (42%), Gaps = 19/156 (12%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTD---CKNLTHLLLGF 58
              L +L+L++N++             +  L+ ++N+L  +P   D      ++ +   +
Sbjct: 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411

Query: 59  NKINNMENDYFLT-------LTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTD 110
           N+I +++   F            +S +NL NN+IS+    +      L+ ++L  N LT+
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

Query: 111 VPC--------ELSSLFHLKSLFLGGNPIKTVRNDI 138
           +P            + + L S+ L  N +  + +D 
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 17/156 (10%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT---------DCKNLT 52
             ++ +++LS+N++      LF     L+ +NL  N LT +P  +         +   LT
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491

Query: 53  HLLLGFNKINNMEND-YFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNE---- 107
            + L FNK+  + +D    TL  L  ++L  N  S+  +   +   L    + +      
Sbjct: 492 SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQG 551

Query: 108 ---LTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQ 140
              L + P  ++    L  L +G N I+ V   I  
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITP 587

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.1 bits (211), Expect = 6e-19
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 15/153 (9%)

Query: 2   LSHLKTLDLSHNKLVS--------DSLPLFIDMRSLTELNLSYNQLTMLPVCTD---CKN 50
           L  ++ ++++ N+ +S         +L        +  + + YN L   PV T     K 
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK 331

Query: 51  LTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELT 109
           L  L   +N++       F +  KL+ LNL  N+I+E+ +N  G    +  L  + N+L 
Sbjct: 332 LGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390

Query: 110 DVP--CELSSLFHLKSLFLGGNPIKTVRNDILQ 140
            +P   +  S+  + ++    N I +V      
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.9 bits (200), Expect = 2e-17
 Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 14/146 (9%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTD----------CKN 50
           L  L  +++ +       LP F+  +  +  +N++ N+        D           + 
Sbjct: 248 LKDLTDVEVYNCPN-LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 51  LTHLLLGFNKINNME-NDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELT 109
           +  + +G+N +           + KL +L    N++       G  I LA L+L+ N++T
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT 366

Query: 110 DVPCEL-SSLFHLKSLFLGGNPIKTV 134
           ++P         +++L    N +K +
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYI 392

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFN 59
              L ++DL  NKL   S       +  L  ++LSYN  +  P    +   L    +   
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546

Query: 60  KINNMEN------DYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC 113
           +            +       L+ L + +N I +V+  +    N+++LD+ DN    +  
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDL 604

Query: 114 E-LSSLFHLKSLFLGGNPIKTVRNDILQDSKR 144
             +          L  +  + +R     D KR
Sbjct: 605 SYVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 5e-13
 Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 11/140 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLT---MLPVCTDCKNLTHLLLG 57
              +  L L      S  +P  I  +  L  L L  +       L               
Sbjct: 80  NGRVTGLSLEGFGA-SGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 58  FNKINNMENDYFLTLTKLSLLNLKNNKISEVS------SNVGDLINLAILDLSDNELTDV 111
                + +  +     +    +L  + I+          +    +    +    N +T V
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198

Query: 112 PCELSSLFHLKSLFLGGNPI 131
              +  L  L+  ++G +P 
Sbjct: 199 SKAVMRLTKLRQFYMGNSPF 218

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 15/143 (10%), Positives = 49/143 (34%), Gaps = 14/143 (9%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
                 +    N +    +   +  +  L +  +  +      +C   +N         K
Sbjct: 182 TLKDTQIGQLSNNI--TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP-------- 112
             +++ D    LT + + N     ++++ + +  L  + +++++ N              
Sbjct: 240 TEDLKWDNLKDLTDVEVYN--CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297

Query: 113 -CELSSLFHLKSLFLGGNPIKTV 134
             +      ++ +++G N +KT 
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTF 320

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 16/138 (11%), Positives = 36/138 (26%), Gaps = 11/138 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFID---------MRSLTELNLSYNQLTMLPVCTDCKNLT 52
           L+ L+ L L  +    +                 +    ++     +   P      +L 
Sbjct: 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED-FSDLI 162

Query: 53  HLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV- 111
              +  +              K + +   +N I+ VS  V  L  L    + ++      
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAEN 222

Query: 112 PCELSSLFHLKSLFLGGN 129
            CE     + +       
Sbjct: 223 ICEAWENENSEYAQQYKT 240

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 8/46 (17%), Positives = 16/46 (34%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT 46
           +  ++  LD+  N  +S  L             L Y++   +  C 
Sbjct: 585 ITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 82.8 bits (205), Expect = 4e-19
 Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 7/169 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L+ L  L+L +N+L + S  +F D+  L  L L+ NQL  LP  V      L  L LG N
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCE-LSS 117
           ++ ++ +  F  LTKL  L L  N++  + +   D L NL  L LS N+L  VP      
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177

Query: 118 LFHLKSLFLGGNPIKTVRNDILQDSKRIISH---IKTSRLDYHCQNVDG 163
           L  L+++ L GN     R +IL  S+ I  +   +K        ++ DG
Sbjct: 178 LGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDG 226

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 82.4 bits (204), Expect = 6e-19
 Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)

Query: 6   KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINN 63
           + LDL    L + S   F  +  LT LNL YNQL  L   V  D   L  L L  N++ +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 64  MENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSLFHL 121
           +    F  LT+L  L L  N++  + S V D L  L  L L+ N+L  +P      L +L
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 122 KSLFLGGNPIKTV 134
           ++L L  N +++V
Sbjct: 158 QTLSLSTNQLQSV 170

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 81.6 bits (202), Expect = 1e-18
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 7/135 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           LS ++  +  ++ + S  L       +L EL+LS+NQ++ L    D   L  L +  N++
Sbjct: 40  LSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRL 97

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            N+     +    LS L L NN++ +   ++  L NL IL + +N+L  +   L  L  L
Sbjct: 98  KNLNG---IPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKL 152

Query: 122 KSLFLGGNPIKTVRN 136
           + L L GN I     
Sbjct: 153 EVLDLHGNEITNTGG 167

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 80.1 bits (198), Expect = 6e-18
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 7/135 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L++    +L    +    L    ++  +   N   + +  L       NL  L L  N+I
Sbjct: 18  LANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI 75

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
           +++       LTKL  L++  N++  ++        L+ L L +NEL D    L  L +L
Sbjct: 76  SDLSP--LKDLTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNNELRDTD-SLIHLKNL 130

Query: 122 KSLFLGGNPIKTVRN 136
           + L +  N +K++  
Sbjct: 131 EILSIRNNKLKSIVM 145

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 7/124 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+ L+ L ++ N+L + +    I    L+ L L  N+L         KNL  L +  NK+
Sbjct: 84  LTKLEELSVNRNRLKNLN---GIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKL 140

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFH 120
            ++       L+KL +L+L  N+I+     +  L  +  +DL+  +  + P +    L+ 
Sbjct: 141 KSIVM--LGFLSKLEVLDLHGNEITNTG-GLTRLKKVNWIDLTGQKCVNEPVKYQPELYI 197

Query: 121 LKSL 124
             ++
Sbjct: 198 TNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 10  LSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYF 69
           +     ++   P    + +  + NL    +T L    +   + +     + I ++     
Sbjct: 3   IQRPTPINQVFPDP-GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--M 59

Query: 70  LTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGN 129
              T L  L+L +N+IS++ S + DL  L  L ++ N L ++         L  LFL  N
Sbjct: 60  QFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNN 116

Query: 130 PIKTVRN 136
            ++   +
Sbjct: 117 ELRDTDS 123

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L +L+ L + +NKL   S+ +   +  L  L+L  N++T     T  K +  + L   K 
Sbjct: 127 LKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKC 184

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDV 111
            N    Y   L   + +   + +       SN G  ++  +L        +V
Sbjct: 185 VNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEV 236

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.8 bits (207), Expect = 2e-18
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 6/138 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDC----KNLTHLLLG 57
           +S    LD S+N L          +  L  L L  NQL  L    +     K+L  L + 
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382

Query: 58  FNKINNMEND-YFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELS 116
            N ++  E          L  LN+ +N +++          + +LDL  N++  +P ++ 
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIKSIPKQVV 441

Query: 117 SLFHLKSLFLGGNPIKTV 134
            L  L+ L +  N +K+V
Sbjct: 442 KLEALQELNVASNQLKSV 459

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.8 bits (202), Expect = 7e-18
 Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 8/135 (5%)

Query: 2   LSHLKTLDLSHNKL--VSDSLPLFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLL 56
           L+ L+TL L  N+L  +S    +   M+SL +L++S N ++       C+  K+L  L +
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 57  GFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP-CEL 115
             N + +          ++ +L+L +NKI  +   V  L  L  L+++ N+L  VP    
Sbjct: 407 SSNILTDTIFRCLPP--RIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIF 464

Query: 116 SSLFHLKSLFLGGNP 130
             L  L+ ++L  NP
Sbjct: 465 DRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 73.0 bits (179), Expect = 7e-15
 Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 3/184 (1%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           LS L+ L +SHN++    + +F   + L  L+LS+N+L  +  C    NL HL L FN  
Sbjct: 44  LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS-CHPTVNLKHLDLSFNAF 102

Query: 62  NNM-ENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           + +     F  +++L  L L    + + S      +N++ + L   E      +   L  
Sbjct: 103 DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162

Query: 121 LKSLFLGGN-PIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK 179
             +  L    P     + IL  S + +++++ S +    ++       S  +  + N   
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222

Query: 180 YKLD 183
             L 
Sbjct: 223 SNLT 226

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.4 bits (175), Expect = 2e-14
 Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 7/138 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L  L    +  +        ++    ++   N + +   M+     +      HL    N
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVG---DLINLAILDLSDNELTDV--PCE 114
            + +   +    LT+L  L L+ N++ E+S        + +L  LD+S N ++      +
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

Query: 115 LSSLFHLKSLFLGGNPIK 132
            S    L SL +  N + 
Sbjct: 395 CSWTKSLLSLNMSSNILT 412

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.3 bits (172), Expect = 5e-14
 Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 7/156 (4%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
                L++S N +        + +  L  L +S+N++  L   V    + L +L L  NK
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSN--VGDLINLAILDLSDNELTDVPCELSSL 118
           +  +          L  L+L  N    +      G++  L  L LS   L        + 
Sbjct: 81  LVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRL 154
            ++  + L        + D           +     
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 11/168 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC---TDCKNLTHLLLGF 58
              L+ LDLSHNKL    +       +L  L+LS+N    LP+C    +   L  L L  
Sbjct: 68  NQELEYLDLSHNKL--VKIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST 124

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVG----DLINLAILDLSDNELTDVP-C 113
             +          L    +L +      E     G    +  +L I+  ++ E   +   
Sbjct: 125 THLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV 184

Query: 114 ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV 161
            + ++ +L+   +         +  L    ++ ++ K S L  +    
Sbjct: 185 SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 79.4 bits (196), Expect = 5e-18
 Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 3/146 (2%)

Query: 6   KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINN 63
           + L L  N++      +F  + +L EL L  NQL  LP  V      LT L LG N++  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 64  MENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFHLK 122
           + +  F  L  L  L +  NK++E+   +  L +L  L L  N+L  +P      L  L 
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162

Query: 123 SLFLGGNPIKTVRNDILQDSKRIISH 148
             +L GNP      DI+     +  H
Sbjct: 163 HAYLFGNPWDCECRDIMYLRNWVADH 188

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCTD-CKNLTHLLLGF 58
           L+ L  LDL  N+L    LP  +F  +  L EL +  N+LT LP   +   +LTHL L  
Sbjct: 87  LTQLTVLDLGTNQL--TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ 144

Query: 59  NKINNMENDYFLTLTKLSLLNLKNN 83
           N++ ++ +  F  L+ L+   L  N
Sbjct: 145 NQLKSIPHGAFDRLSSLTHAYLFGN 169

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 80.1 bits (198), Expect = 6e-18
 Identities = 53/169 (31%), Positives = 76/169 (44%), Gaps = 10/169 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L++L  L L+ N+L S    +F  + +L EL L  NQL  LP  V     NLT+L L  N
Sbjct: 84  LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCE---- 114
           ++ ++    F  LT L+ L+L  N++  +   V D L  L  L L  N+L  VP      
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203

Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDG 163
           L+SL +   ++L  NP       I   S+ I  H    R        D 
Sbjct: 204 LTSLQY---IWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDS 249

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+ +  +  +++ +   S+     + ++  L L  N+L  +    +  NLT+L+L  N++
Sbjct: 40  LNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQL 97

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSLF 119
            ++ N  F  LT L  L L  N++  +   V D L NL  L+L+ N+L  +P  +   L 
Sbjct: 98  QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT 157

Query: 120 HLKSLFLGGN 129
           +L  L L  N
Sbjct: 158 NLTELDLSYN 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 72.0 bits (177), Expect = 4e-15
 Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 6/130 (4%)

Query: 6   KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNME 65
              +L    +         ++ S+ ++  + + +  +       N+ +L LG NK++++ 
Sbjct: 22  IKANLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS 79

Query: 66  NDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCEL-SSLFHLKS 123
                 LT L+ L L  N++  + + V D L NL  L L +N+L  +P  +   L +L  
Sbjct: 80  --ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137

Query: 124 LFLGGNPIKT 133
           L L  N +++
Sbjct: 138 LNLAHNQLQS 147

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 81.0 bits (200), Expect = 7e-18
 Identities = 28/149 (18%), Positives = 62/149 (41%), Gaps = 10/149 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLS-YNQLTMLP--VCTDCKNLTHLLL 56
              L+ +++S N ++   +    F ++  L E+ +   N L  +      +  NL +LL+
Sbjct: 53  FGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111

Query: 57  GFNKINNMENDYFLTLTKLSLLNLK-NNKISEVSSNV--GDLINLAILDLSDNELTDVPC 113
               I ++ + + +   +  LL+++ N  I  +  N   G      IL L+ N + ++  
Sbjct: 112 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171

Query: 114 ELSSLFHLKSL-FLGGNPIKTVRNDILQD 141
              +   L  L     N ++ + ND+   
Sbjct: 172 SAFNGTQLDELNLSDNNNLEELPNDVFHG 200

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 76.4 bits (188), Expect = 3e-16
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYN-QLTMLPVCT---DCKNLTHLLLG 57
           L +L+ L +S+  +        I       L++  N  +  +   +          L L 
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162

Query: 58  FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCE-L 115
            N I  + N  F       L    NN + E+ ++V        ILD+S   +  +P   L
Sbjct: 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222

Query: 116 SSLFHLKSLFLGGN 129
            +L  L++      
Sbjct: 223 ENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.1 bits (182), Expect = 2e-15
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 7/147 (4%)

Query: 2   LSHLKTLDLSH-NKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
           L  L  + +   N L+  +   F ++ +L  L +S   +  LP            L +  
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

Query: 59  N-KINNMENDYFLTLT-KLSLLNLKNNKISEVSSNVGDLINLAILDLSD-NELTDVPCE- 114
           N  I+ +E + F+ L+ +  +L L  N I E+ ++  +   L  L+LSD N L ++P + 
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 115 LSSLFHLKSLFLGGNPIKTVRNDILQD 141
                    L +    I ++ +  L++
Sbjct: 198 FHGASGPVILDISRTRIHSLPSYGLEN 224

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.2 bits (177), Expect = 7e-15
 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 12/151 (7%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQ-LTMLPVCT--DCKNLTHL-LLGF 58
            +   L     KL       F     L ++ +S N  L ++      +   L  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDN-ELTDVP---- 112
           N +  +  + F  L  L  L + N  I  +        +   +LD+ DN  +  +     
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 113 CELSSLFHLKSLFLGGNPIKTVRNDILQDSK 143
             LS       L+L  N I+ + N     ++
Sbjct: 150 VGLSFE--SVILWLNKNGIQEIHNSAFNGTQ 178

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.4 bits (149), Expect = 4e-11
 Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 10/143 (6%)

Query: 6   KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFNKINN 63
           +      +K+    +P  +  R+  EL     +L ++         +L  + +  N +  
Sbjct: 12  RVFLCQESKV--TEIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 64  M-ENDYFLTLTKLSLLNL-KNNKISEVSSNV-GDLINLAILDLSDNELTDVPCEL-SSLF 119
           + E D F  L KL  + + K N +  ++     +L NL  L +S+  +  +P        
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 120 HLKSLFLGGNP-IKTVRNDILQD 141
               L +  N  I T+  +    
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVG 151

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 5/119 (4%)

Query: 28  SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISE 87
           S        +++T +P     +N   L     K+  ++   F     L  + +  N + E
Sbjct: 10  SNRVFLCQESKVTEIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 88  -VSSNV-GDLINLAILDLSD-NELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDS 142
            + ++V  +L  L  + +   N L  +  E   +L +L+ L +    IK + +     S
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 5/108 (4%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
           +      L L+ N +       F   +         N L  LP  V         L +  
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDN 106
            +I+++ +     L KL   +  N K          L+ L    L+  
Sbjct: 212 TRIHSLPSYGLENLKKLRARSTYNLKKLPTLEK---LVALMEASLTYP 256

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 9/135 (6%)

Query: 2   LSHLKTLDLSHNKLV-SDSLPLFIDMRSLTELNLSYNQLT-----MLPVCTDCKNLTHLL 55
            S LK L++S N L     +   + + SL  L+LS N ++        +   C  L HL 
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184

Query: 56  LGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELT-DVPCE 114
           +  NKI+   +        L  L++ +N  S     +GD   L  LD+S N+L+ D    
Sbjct: 185 ISGNKISG--DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA 242

Query: 115 LSSLFHLKSLFLGGN 129
           +S+   LK L +  N
Sbjct: 243 ISTCTELKLLNISSN 257

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.5 bits (189), Expect = 5e-16
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 13/138 (9%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLPVCTD---CKNLTHLLLG 57
           L+ L++L LS++ + + S+  F    SLT L+LS N L+  +   T    C  L  L + 
Sbjct: 76  LTGLESLFLSNSHI-NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134

Query: 58  FNKIN-NMENDYFLTLTKLSLLNLKNNKIS----EVSSNVGDLINLAILDLSDNELT-DV 111
            N ++   +    L L  L +L+L  N IS               L  L +S N+++ DV
Sbjct: 135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV 194

Query: 112 PCELSSLFHLKSLFLGGN 129
              +S   +L+ L +  N
Sbjct: 195 D--VSRCVNLEFLDVSSN 210

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.7 bits (187), Expect = 9e-16
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 8/136 (5%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFI---DMRSLTELNLSYNQLT-MLPVC-TDCKNLTHLL 55
           + + L TLDLS N   S  +   +      +L EL L  N  T  +P   ++C  L  L 
Sbjct: 366 LSASLLTLDLSSNNF-SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424

Query: 56  LGFNKINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPC 113
           L FN ++        +L+KL  L L  N +  E+   +  +  L  L L  N+LT ++P 
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

Query: 114 ELSSLFHLKSLFLGGN 129
            LS+  +L  + L  N
Sbjct: 485 GLSNCTNLNWISLSNN 500

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 14/136 (10%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLPVC-TDCKNLTHLLLGFN 59
             +L+ LD+S N   S  +P   D  +L  L++S N+L+       + C  L  L +  N
Sbjct: 199 CVNLEFLDVSSNNF-STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257

Query: 60  KINN---MENDYFLTLTKLSLLNLKNNKIS-EVSSNV-GDLINLAILDLSDNELT-DVPC 113
           +              L  L  L+L  NK + E+   + G    L  LDLS N     VP 
Sbjct: 258 QFVGPIPPLP-----LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312

Query: 114 ELSSLFHLKSLFLGGN 129
              S   L+SL L  N
Sbjct: 313 FFGSCSLLESLALSSN 328

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.9 bits (185), Expect = 2e-15
 Identities = 40/134 (29%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLT-MLPVCTDCKNLTHLLLGFN 59
            S L+ LD+S NKL S      I     L  LN+S NQ    +P     K+L +L L  N
Sbjct: 222 CSALQHLDISGNKL-SGDFSRAISTCTELKLLNISSNQFVGPIPPLP-LKSLQYLSLAEN 279

Query: 60  KIN-NMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELTDV--PCEL 115
           K    + +        L+ L+L  N     V    G    L  L LS N  +       L
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339

Query: 116 SSLFHLKSLFLGGN 129
             +  LK L L  N
Sbjct: 340 LKMRGLKVLDLSFN 353

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLT-MLPVC-TDCKNLTHLLLGF 58
           LS L+ L L  N L    +P  +  +++L  L L +N LT  +P   ++C NL  + L  
Sbjct: 441 LSKLRDLKLWLNML-EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELS 116
           N++      +   L  L++L L NN  S  + + +GD  +L  LDL+ N     +P  + 
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559

Query: 117 SL-FHLKSLFLGGNPIKTVRND 137
                + + F+ G     ++ND
Sbjct: 560 KQSGKIAANFIAGKRYVYIKND 581

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.8 bits (182), Expect = 4e-15
 Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 10/137 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLT-MLP--VCTDCKNLTHLLL 56
            S L++L LS N   S  LP    + MR L  L+LS+N+ +  LP  +     +L  L L
Sbjct: 317 CSLLESLALSSNNF-SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375

Query: 57  GFNKINNM--ENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVP 112
             N  +     N        L  L L+NN  + ++   + +   L  L LS N L+  +P
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435

Query: 113 CELSSLFHLKSLFLGGN 129
             L SL  L+ L L  N
Sbjct: 436 SSLGSLSKLRDLKLWLN 452

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 7e-14
 Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 9/136 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDM--RSLTELNLSYNQLT-MLPV---CTDCKNLTHLL 55
           +  LK LDLS N+  S  LP  +     SL  L+LS N  +  +           L  L 
Sbjct: 342 MRGLKVLDLSFNEF-SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 56  LGFNKINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPC 113
           L  N             ++L  L+L  N +S  + S++G L  L  L L  N L  ++P 
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

Query: 114 ELSSLFHLKSLFLGGN 129
           EL  +  L++L L  N
Sbjct: 461 ELMYVKTLETLILDFN 476

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 4e-12
 Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 10/134 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLT-MLPVCTDCKNLTHLLLGFN 59
           L +L  L LS+N   S ++P  + D RSL  L+L+ N     +P        +   +  N
Sbjct: 513 LENLAILKLSNNSF-SGNIPAELGDCRSLIWLDLNTNLFNGTIPAA--MFKQS-GKIAAN 568

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKIS---EVSSNVGDLINLAILDLSDNELT-DVPCEL 115
            I      Y          +   N +      S  +  L      +++            
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628

Query: 116 SSLFHLKSLFLGGN 129
            +   +  L +  N
Sbjct: 629 DNNGSMMFLDMSYN 642

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 12/139 (8%)

Query: 3   SHLKTLDLSHNKLVSDSLPL---FIDMRSLTELNLSYNQLT-MLPVCTDCKNLTHLLLGF 58
             + ++DLS   L      +    + +  L  L LS + +   +       +LT L L  
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 59  NKINNM--ENDYFLTLTKLSLLNLKNNKISEV--SSNVGDLINLAILDLSDNELT-DVPC 113
           N ++          + + L  LN+ +N +      S    L +L +LDLS N ++     
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 114 EL---SSLFHLKSLFLGGN 129
                     LK L + GN
Sbjct: 170 GWVLSDGCGELKHLAISGN 188

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT--MLPVCTDCKNLTHLLLGFN 59
           LS     +++       + P F +  S+  L++SYN L+  +         L  L LG N
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666

Query: 60  KIN-----NMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT 109
            I+      + +     L  L++L+L +NK+   +   +  L  L  +DLS+N L+
Sbjct: 667 DISGSIPDEVGD-----LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 16/139 (11%)

Query: 2   LSHLKTLDLSHNKLV-SDSLPLFI-DMRSLTELNLSYNQLT-MLPVC-TDCKNLTHLLLG 57
               K    + N L         +  + +    N++             +  ++  L + 
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640

Query: 58  FNKI-----NNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-D 110
           +N +       + +     +  L +LNL +N IS  +   VGDL  L ILDLS N+L   
Sbjct: 641 YNMLSGYIPKEIGS-----MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695

Query: 111 VPCELSSLFHLKSLFLGGN 129
           +P  +S+L  L  + L  N
Sbjct: 696 IPQAMSALTMLTEIDLSNN 714

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 22/108 (20%)

Query: 25  DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84
               +T ++LS   L                +GF+ ++       L+LT L  L L N+ 
Sbjct: 48  RDDKVTSIDLSSKPLN---------------VGFSAVS----SSLLSLTGLESLFLSNSH 88

Query: 85  ISEVSSNVGDLINLAILDLSDNELTDV---PCELSSLFHLKSLFLGGN 129
           I+   S      +L  LDLS N L+        L S   LK L +  N
Sbjct: 89  INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLT-MLPVC-TDCKNLTHLLLG 57
            + +L  L+L HN + S S+P    D+R L  L+LS N+L   +P   +    LT + L 
Sbjct: 654 SMPYLFILNLGHNDI-SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712

Query: 58  FNK 60
            N 
Sbjct: 713 NNN 715

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 77.8 bits (192), Expect = 1e-17
 Identities = 51/162 (31%), Positives = 71/162 (43%), Gaps = 4/162 (2%)

Query: 6   KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINN 63
             LDL  N L S    +F ++ SLT+L L  N+L  LP  V     +LT+L L  N++ +
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 64  MENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCE-LSSLFHL 121
           + N  F  LT+L  L L  N++  +   V D L  L  L L  N+L  VP      L  L
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150

Query: 122 KSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDG 163
           + ++L  NP       I   S+ I  H    R        D 
Sbjct: 151 QYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDS 192

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG 57
           L+ L  L+LS N+L   SLP  +F  +  L EL L+ NQL  LP  V      L  L L 
Sbjct: 75  LTSLTYLNLSTNQL--QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132

Query: 58  FNKINNMENDYFLTLTKLSLLNLKNN 83
            N++ ++ +  F  LT L  + L +N
Sbjct: 133 QNQLKSVPDGVFDRLTSLQYIWLHDN 158

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 3/136 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           ++ L  + L++  +    L       ++ +L ++    T     +   NL  L +    +
Sbjct: 43  MNSLTYITLANINV--TDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDV 100

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVS-SNVGDLINLAILDLSDNELTDVPCELSSLFH 120
            + +      LT L+LL++ ++   +   + +  L  +  +DLS N        L +L  
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE 160

Query: 121 LKSLFLGGNPIKTVRN 136
           LKSL +  + +   R 
Sbjct: 161 LKSLNIQFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.2 bits (188), Expect = 4e-17
 Identities = 22/133 (16%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC--TDCKNLTHLLLGFN 59
             ++K L +++    ++  P+   + +L  L +    +T   +   +   +LT L +  +
Sbjct: 65  AHNIKDLTINNIHA-TNYNPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 60  KINNMENDYFLTLTKLSLLNL-KNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSL 118
             ++       TL K++ ++L  N  I+++   +  L  L  L++  + + D    +   
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDF 180

Query: 119 FHLKSLFLGGNPI 131
             L  L+     I
Sbjct: 181 PKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.2 bits (170), Expect = 1e-14
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 25  DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84
            M SLT + L+   +T L       N+  L +      N        L+ L  L +    
Sbjct: 42  QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKD 99

Query: 85  ISEVS-SNVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNP 130
           ++     N+  L +L +LD+S +   D    ++++L  + S+ L  N 
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC--TDCKNLTHLLLGFN 59
           LS+L+ L +    + SD +P    + SLT L++S++      +        +  + L +N
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 60  -KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV 111
             I ++      TL +L  LN++ + + +    + D   L  L      +   
Sbjct: 147 GAITDIMP--LKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 14/86 (16%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 49  KNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNEL 108
                 L G    ++  N     +  L+ + L N  ++++ + +    N+  L +++   
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHA 78

Query: 109 TDVPCELSSLFHLKSLFLGGNPIKTV 134
           T+    +S L +L+ L + G  + + 
Sbjct: 79  TNYN-PISGLSNLERLRIMGKDVTSD 103

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 6e-07
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L  + ++DLS+N  ++D +PL   +  L  LN+ ++ +       D   L  L      I
Sbjct: 135 LPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTI 193

Query: 62  NNME 65
              +
Sbjct: 194 GGKK 197

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 80.6 bits (198), Expect = 2e-17
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 4   HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINN 63
               LD   +K + ++  L ++   +  L+L++  LT+L        +THL L  N++  
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA 477

Query: 64  MENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC--ELSSLFHL 121
           +       L  L +L   +N +  V   V +L  L  L L +N L        L S   L
Sbjct: 478 LPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 122 KSLFLGGNPI 131
             L L GN +
Sbjct: 536 VLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 74.8 bits (183), Expect = 2e-15
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 4   HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVC-TDCKNLTHLLLGFNKIN 62
            ++ L L+H  L    L     +  +T L+LS+N+L  LP      + L  L    N + 
Sbjct: 442 DVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499

Query: 63  NMENDYFLTLTKLSLLNLKNNKISEVSS--NVGDLINLAILDLSDNELTDVPCELSSLFH 120
           N++      L +L  L L NN++ + ++   +     L +L+L  N L         L  
Sbjct: 500 NVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557

Query: 121 L 121
           +
Sbjct: 558 M 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.2 bits (171), Expect = 6e-14
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 2/98 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L  +  LDLSHN+L     P    +R L  L  S N L  +    +   L  LLL  N++
Sbjct: 462 LLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL 520

Query: 62  NNMEN-DYFLTLTKLSLLNLKNNKISEVSSNVGDLINL 98
                    ++  +L LLNL+ N + +       L  +
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 9e-09
 Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 10/145 (6%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP-VCTDCKNLT-----HL 54
             + L++   S  +L          + ++  L  + + L            L        
Sbjct: 360 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 419

Query: 55  LLGFNKINNMENDYFLTL---TKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV 111
               +  +    +  +       + +L+L +  ++ +  ++  L+ +  LDLS N L  +
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRAL 478

Query: 112 PCELSSLFHLKSLFLGGNPIKTVRN 136
           P  L++L  L+ L    N ++ V  
Sbjct: 479 PPALAALRCLEVLQASDNALENVDG 503

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 4/138 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
              L   +LS  K            + L EL    N+  +L +    + L  LL     +
Sbjct: 348 DEQLFRCELSVEKSTVLQ-SELESCKELQELEP-ENKWCLLTIILLMRALDPLLYEKETL 405

Query: 62  NNMENDYFLT-LTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
                   +  +    L +L++  + E S    +  ++ +L L+  +LT +   L  L  
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-HLEQLLL 464

Query: 121 LKSLFLGGNPIKTVRNDI 138
           +  L L  N ++ +   +
Sbjct: 465 VTHLDLSHNRLRALPPAL 482

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 79.7 bits (197), Expect = 3e-17
 Identities = 34/159 (21%), Positives = 57/159 (35%), Gaps = 12/159 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
            S LK +D+ +N L      L     SL  +    NQL  LP   +   LT +    N +
Sbjct: 152 SSFLKIIDVDNNSLKK----LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL 207

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
             +          L  +   NN + E+   + +L  L  +   +N L  +P    S   L
Sbjct: 208 KKL----PDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPPS---L 259

Query: 122 KSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQN 160
           ++L +  N +  +       +   +S    S L     N
Sbjct: 260 EALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.7 bits (179), Expect = 8e-15
 Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 22/151 (14%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L  L  +   +N L      L     SL  +    N L  LP   +   LT +    N +
Sbjct: 194 LPFLTAIYADNNSLKK----LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 249

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF-- 119
             + +        L  LN+++N ++++      L  L + +   + L+++P  L  L   
Sbjct: 250 KTLPD----LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 305

Query: 120 ------------HLKSLFLGGNPIKTVRNDI 138
                        L+ L +  N +  +    
Sbjct: 306 SNEIRSLCDLPPSLEELNVSNNKLIELPALP 336

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 14/134 (10%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
           +      L+L++  L   SLP       L  L  S N LT LP     ++L  LL+  N 
Sbjct: 69  LDRQAHELELNNLGL--SSLPELP--PHLESLVASCNSLTELP--ELPQSLKSLLVDNNN 122

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           +  + +        L  L + NN++ ++   + +   L I+D+ +N L  +P        
Sbjct: 123 LKALSD----LPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLP---DLPPS 174

Query: 121 LKSLFLGGNPIKTV 134
           L+ +  G N ++ +
Sbjct: 175 LEFIAAGNNQLEEL 188

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 29/149 (19%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
              L  LD+S N      L       +L  LN S N++  L       +L  L +  NK+
Sbjct: 276 PQSLTFLDVSENIF--SGLSELPP--NLYYLNASSNEIRSLC--DLPPSLEELNVSNNKL 329

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSL--- 118
             +         +L  L    N ++EV        NL  L +  N L + P    S+   
Sbjct: 330 IELPA----LPPRLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVEDL 382

Query: 119 -------------FHLKSLFLGGNPIKTV 134
                         +LK L +  NP++  
Sbjct: 383 RMNSHLAEVPELPQNLKQLHVETNPLREF 411

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 25/146 (17%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
              L+ L++S+NKL+   LP       L  L  S+N L  +P     +NL  L + +N +
Sbjct: 316 PPSLEELNVSNNKLIE--LPALP--PRLERLIASFNHLAEVP--ELPQNLKQLHVEYNPL 369

Query: 62  ---------------NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDN 106
                          N+   +       L  L+++ N + E       + +   L ++  
Sbjct: 370 REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVED---LRMNSE 426

Query: 107 ELTDVP-CELSSLFHLKSLFLGGNPI 131
            + D       +   L+      +  
Sbjct: 427 RVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 17/125 (13%)

Query: 24  IDMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSL----- 77
           +    L E     + LT +PV   + K+ T     +++             ++++     
Sbjct: 8   VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 78  --------LNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGN 129
                   L L N  +S +        +L  L  S N LT++P    SL  L        
Sbjct: 68  CLDRQAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLK 124

Query: 130 PIKTV 134
            +  +
Sbjct: 125 ALSDL 129

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 20/149 (13%), Positives = 46/149 (30%), Gaps = 29/149 (19%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           +        + ++   ++ P   + R +    L              +    L L    +
Sbjct: 33  VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL---------DRQAHELELNNLGL 83

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF-- 119
           +++          L  L    N ++E+      L +L + + +   L+D+P  L  L   
Sbjct: 84  SSLPEL----PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVS 139

Query: 120 --------------HLKSLFLGGNPIKTV 134
                          LK + +  N +K +
Sbjct: 140 NNQLEKLPELQNSSFLKIIDVDNNSLKKL 168

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 2   LSHLKTLDLSHNKLVS-----------------DSLPLFIDMRSLTELNLSYNQLTMLPV 44
             +LK L + +N L                     +P     ++L +L++  N L   P 
Sbjct: 356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELP--QNLKQLHVETNPLREFPD 413

Query: 45  CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS 86
               +++  L +   ++ +       T  KL     +++   
Sbjct: 414 I--PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.0 bits (192), Expect = 1e-16
 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 28/157 (17%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDC-KNLTHLLLGFNK 60
            S    L+ + N            ++ L  L L  N L          KN++ L      
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411

Query: 61  INNMENDYFLTLT--------------------------KLSLLNLKNNKISEVSSNVGD 94
           +N++ +  +                              K+ +L+L NN+I  +  +V  
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTH 471

Query: 95  LINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNP 130
           L  L  L+++ N+L  VP      L  L+ ++L  NP
Sbjct: 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 1e-14
 Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 7/230 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           LS L+ L LSHN++ S    +F+  + L  L++S+N+L  +  C    +L HL L FN  
Sbjct: 75  LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS-CCPMASLRHLDLSFNDF 133

Query: 62  NNM-ENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAI--LDLSDNELTDVPCELSSL 118
           + +     F  LTKL+ L L   K  ++       ++L+   LDL    +     E   +
Sbjct: 134 DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193

Query: 119 FHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINID 178
            +   L L  +P        +  S   + H++ S +  + +N         E T    + 
Sbjct: 194 PNTTVLHLVFHPNSLFSV-QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252

Query: 179 KYKLDRTKTL--TLCKVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT 226
              L   +T      K+        +  ++    TI   ID+ +   ++T
Sbjct: 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.1 bits (169), Expect = 1e-13
 Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 9/168 (5%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
              K L LS N +    +P    +  L  L LS+N++  L   V    ++L +L +  N+
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEV--SSNVGDLINLAILDLSDNELTDVPCELSSL 118
           + N+       +  L  L+L  N    +      G+L  L  L LS  +   +     + 
Sbjct: 112 LQNIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 119 FHLKSLFLG--GNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGG 164
            HL  + L      IK    + LQ     + H+           V+  
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.1 bits (156), Expect = 6e-12
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 7/135 (5%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV-CTD-CKNLTHLLLGFN 59
           L  L    + +   +     L+     +    LS +    + + C     + T L    N
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP-----CE 114
              +       TL +L  L L+ N +           N++ L+  D  L  +        
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423

Query: 115 LSSLFHLKSLFLGGN 129
            +    +  L L  N
Sbjct: 424 CAWAESILVLNLSSN 438

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.5 bits (92), Expect = 8e-04
 Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 19/147 (12%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMR------------SLTELNLSYNQLTMLPVCTDCK 49
           ++ L  L LS+ KL  ++    +               +L  +  ++     L      +
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 50  NLTHLLLGFNKINNMENDYFLTLTKLSL-----LNLKNNKISEVSSNVGD-LINLAILDL 103
            + +L +    I    +    T ++ +L      ++KN         +      + I  L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 104 SDNELTDVPCE-LSSLFHLKSLFLGGN 129
           S ++   +      S      L    N
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQN 363

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.3 bits (185), Expect = 5e-16
 Identities = 34/140 (24%), Positives = 51/140 (36%), Gaps = 13/140 (9%)

Query: 2   LSHLKTLDLSHNKLVSD----SLPLFIDMRSLTELNLSYNQLTMLPVC-----TDCKNLT 52
              L TLDLS N  + +    S    +   +L  L L    +                L 
Sbjct: 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231

Query: 53  HLLLGFNKINNMEND-YFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV 111
            L L  N + +          ++L+ LNL    + +V   +     L++LDLS N L   
Sbjct: 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA--KLSVLDLSYNRLDRN 289

Query: 112 PCELSSLFHLKSLFLGGNPI 131
           P     L  + +L L GNP 
Sbjct: 290 P-SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.1 bits (156), Expect = 4e-12
 Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 10/115 (8%)

Query: 2   LSHLKTLDLSHNKLVSDSLP---LFIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLL 55
              L+ L L +  + + S     L      L  L+LS+N L        C     L  L 
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 56  LGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTD 110
           L F  +  +         KLS+L+L  N++    S   +L  +  L L  N   D
Sbjct: 260 LSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 28/157 (17%), Positives = 46/157 (29%), Gaps = 17/157 (10%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCTD------CKNLTH 53
           +S L+ L L + ++   + P  L      L  LNL                      L  
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 54  LLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-----GDLINLAILDLSDNEL 108
           L +      N   +       LS L+L +N        +          L +L L +  +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 109 TDVPCELSSLFH----LKSLFLGGNPIKTVRNDILQD 141
                  S+L      L+ L L  N ++        D
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
             S L +L+LS   L      L      L+ L+LSYN+L   P   +   + +L L  N 
Sbjct: 251 WPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNP 307

Query: 61  INNME 65
             + E
Sbjct: 308 FLDSE 312

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 17/152 (11%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHL----L 55
           LS +  +++ + + ++  +      ++  L  L +    L M P  T   +        +
Sbjct: 79  LSKVTHIEIRNTRNLT-YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137

Query: 56  LGFNKINNMENDYFLTLTKLSL-LNLKNNKISEVSSNVGDLINLAILDLSDN-ELTDVPC 113
                + ++  + F  L   +L L L NN  + V     +   L  + L+ N  LT +  
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID- 196

Query: 114 ELSSLFH-----LKSLFLGGNPIKTVRNDILQ 140
                F         L +    +  + +  L+
Sbjct: 197 --KDAFGGVYSGPSLLDVSQTSVTALPSKGLE 226

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 13/154 (8%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYN-QLTMLPVCT--DCKNLTHLLLG 57
           +    +TL L    L +     F ++ +++ + +S +  L  L   +  +   +TH+ + 
Sbjct: 29  LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 58  FNK-INNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDN-ELTDVP- 112
             + +  ++ D    L  L  L + N  +      + V       IL+++DN  +T +P 
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 113 ---CELSSLFHLKSLFLGGNPIKTVRNDILQDSK 143
                L +     +L L  N   +V+      +K
Sbjct: 149 NAFQGLCNE--TLTLKLYNNGFTSVQGYAFNGTK 180

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 11/150 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQ-LTMLP--VCTDCKNLTHLLL 56
           L ++  + +S +  +   L    F ++  +T + +   + LT +      +   L  L +
Sbjct: 54  LPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112

Query: 57  GFNKINNMENDYFLT-LTKLSLLNL-KNNKISEVSSNV-GDLIN-LAILDLSDNELTDVP 112
               +    +   +       +L +  N  ++ +  N    L N    L L +N  T V 
Sbjct: 113 FNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172

Query: 113 CELSSLFHLKSLFLGGNP-IKTVRNDILQD 141
               +   L +++L  N  +  +  D    
Sbjct: 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGG 202

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.3 bits (152), Expect = 9e-12
 Identities = 22/147 (14%), Positives = 58/147 (39%), Gaps = 12/147 (8%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN- 59
              +   ++   +    +P      S   L L    L  +P     +  N++ + +  + 
Sbjct: 11  HQEEDFRVTCKDI--QRIPSL--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 60  KINNMENDYFLTLTKLSLLNLKNNK-ISEVSSNV-GDLINLAILDLSDNELTDVP--CEL 115
            +  +E+  F  L+K++ + ++N + ++ +  +   +L  L  L + +  L   P   ++
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126

Query: 116 SSLFHLKSLFLGGNP-IKTVRNDILQD 141
            S      L +  NP + ++  +  Q 
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQG 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 70.9 bits (174), Expect = 4e-15
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 5/126 (3%)

Query: 8   LDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMEND 67
           L      +      L   +++   L LS N +  +   +  +NL  L LG N I  +EN 
Sbjct: 30  LHGMIPPIEKMDATLS-TLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL 88

Query: 68  YFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC--ELSSLFHLKSLF 125
             +    L  L +  N+I+ +S  +  L+NL +L +S+N++T+     +L++L  L+ L 
Sbjct: 89  DAVA-DTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146

Query: 126 LGGNPI 131
           L GNP+
Sbjct: 147 LAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 4/109 (3%)

Query: 29  LTELNLSYNQLTMLPVC-TDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISE 87
             EL+     +  +    +  K   HL L  N I  + +     +  L +L+L  N I +
Sbjct: 27  KVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKK 84

Query: 88  VSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRN 136
           + +       L  L +S N++  +   +  L +L+ L++  N I     
Sbjct: 85  IENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGE 132

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
            + +L+ L L  N +      L     +L EL +SYNQ+  L       NL  L +  NK
Sbjct: 68  GMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK 126

Query: 61  INNMEN-DYFLTLTKLSLLNLKNNKISE 87
           I N    D    L KL  L L  N +  
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGNPLYN 154

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 70.0 bits (172), Expect = 6e-15
 Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 9/107 (8%)

Query: 30  TELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEV 88
           TEL L  NQ T++P   ++ K+LT + L  N+I+ + N  F  +T+L  L L  N++  +
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 89  SSNVGD-LINLAILDLSDNELTDVPC----ELSSLFHLKSLFLGGNP 130
                D L +L +L L  N+++ VP     +LS+L H   L +G NP
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH---LAIGANP 137

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
             HL  +DLS+N++ + S   F +M  L  L LSYN+L  +P       K+L  L L  N
Sbjct: 53  YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112

Query: 60  KINNMENDYFLTLTKLSLLNLKNN 83
            I+ +    F  L+ LS L +  N
Sbjct: 113 DISVVPEGAFNDLSALSHLAIGAN 136

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.4 bits (178), Expect = 9e-15
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 10/132 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+ L +LD  ++ +    +     +  LT+L  + N +T L + +   NLT+L    NK+
Sbjct: 41  LATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNITTLDL-SQNTNLTYLACDSNKL 97

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
            N++      LTKL+ LN   NK++++  +V     L  L+ + N LT++   +S    L
Sbjct: 98  TNLD---VTPLTKLTYLNCDTNKLTKL--DVSQNPLLTYLNCARNTLTEID--VSHNTQL 150

Query: 122 KSLFLGGNPIKT 133
             L    N   T
Sbjct: 151 TELDCHLNKKIT 162

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 69.7 bits (171), Expect = 8e-14
 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 10/133 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
              L  L+ + N L    +        LTEL+   N+       T    LT L   FNKI
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNT---QLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI 182

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
             ++         L+ LN   N I+++  ++   I L  LD S N+LT++   ++ L  L
Sbjct: 183 TELD---VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQL 235

Query: 122 KSLFLGGNPIKTV 134
                  NP+  +
Sbjct: 236 TYFDCSVNPLTEL 248

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 69.3 bits (170), Expect = 9e-14
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 5   LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNM 64
             +   +  ++ +        + +LT L+   + +T +        LT L+   N I  +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL 79

Query: 65  ENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSL 124
           +       T L+ L   +NK++ +  +V  L  L  L+   N+LT +   +S    L  L
Sbjct: 80  D---LSQNTNLTYLACDSNKLTNL--DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132

Query: 125 FLGGNPIKTV 134
               N +  +
Sbjct: 133 NCARNTLTEI 142

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 10/133 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
              L  LD S NKL    +     +  LT  + S N LT L V T    LT L      +
Sbjct: 211 NIQLTFLDCSSNKL--TEID-VTPLTQLTYFDCSVNPLTELDVST-LSKLTTLHCIQTDL 266

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
             ++  +   L        +  K  +V+ N      L +LD     +T++   LS    L
Sbjct: 267 LEIDLTHNTQLIYFQAEGCRKIKELDVTHN----TQLYLLDCQAAGITELD--LSQNPKL 320

Query: 122 KSLFLGGNPIKTV 134
             L+L    +  +
Sbjct: 321 VYLYLNNTELTEL 333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.4 bits (165), Expect = 4e-13
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 10/133 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
            ++L  L    NKL +  +     +  LT LN   N+LT L V +    LT+L    N +
Sbjct: 84  NTNLTYLACDSNKLTNLDVT---PLTKLTYLNCDTNKLTKLDV-SQNPLLTYLNCARNTL 139

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
             ++       T+L+ L+   NK      +V     L  LD S N++T++   +S    L
Sbjct: 140 TEID---VSHNTQLTELDCHLNKKIT-KLDVTPQTQLTTLDCSFNKITELD--VSQNKLL 193

Query: 122 KSLFLGGNPIKTV 134
             L    N I  +
Sbjct: 194 NRLNCDTNNITKL 206

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 13/143 (9%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
            + L        + +            L  L+     +T L + +    L +L L   ++
Sbjct: 274 NTQLIYFQAEGCRKIK--ELDVTHNTQLYLLDCQAAGITELDL-SQNPKLVYLYLNNTEL 330

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCE------L 115
             ++       TKL  L+  N  I + SS VG +  L     ++ +   +P E      L
Sbjct: 331 TELD---VSHNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSL 386

Query: 116 SSLFHLKSLFLGGNPIKTVRNDI 138
           +       L   GNP+     D 
Sbjct: 387 TIAVSPDLLDQFGNPMNIEPGDG 409

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 9/123 (7%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
              L  L L++ +L    L +      L  L+     +           L +      + 
Sbjct: 317 NPKLVYLYLNNTELTE--LDV-SHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQT 373

Query: 62  NNMENDYFLTL-----TKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELS 116
             M  +              LL+   N ++    + G + + A   ++   L+     ++
Sbjct: 374 ITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGG-VYDQATNTITWENLSTDNPAVT 432

Query: 117 SLF 119
             F
Sbjct: 433 YTF 435

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 49  KNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNEL 108
            N    +    ++   +      L  L+ L+  N+ I+++ + +  L  L  L  + N +
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNI 76

Query: 109 TDVPCELSSLFHLKSLFLGGNPIKTV 134
           T +   LS   +L  L    N +  +
Sbjct: 77  TTLD--LSQNTNLTYLACDSNKLTNL 100

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 68.5 bits (168), Expect = 3e-14
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 5/106 (4%)

Query: 30  TELNLSYNQLTMLP---VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS 86
           TEL L+ N+L  +    +     +L  L L  N++  +E + F   + +  L L  NKI 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 87  EVSSNVGD-LINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNP 130
           E+S+ +   L  L  L+L DN+++ V       L  L SL L  NP
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG 57
           L HL  L+L  N+L    +    F     + EL L  N++  +   +      L  L L 
Sbjct: 53  LPHLVKLELKRNQLTG--IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110

Query: 58  FNKINNMENDYFLTLTKLSLLNLKNN 83
            N+I+ +    F  L  L+ LNL +N
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASN 136

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 67.8 bits (166), Expect = 4e-14
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 8/128 (6%)

Query: 8   LDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMEN 66
           + L+   L+  +     +     EL+L   ++ ++  +         +    N+I  ++ 
Sbjct: 2   VKLTAE-LIEQAAQY-TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 59

Query: 67  DYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVP--CELSSLFHLKS 123
             F  L +L  L + NN+I  +   +   L +L  L L++N L ++     L+SL  L  
Sbjct: 60  --FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117

Query: 124 LFLGGNPI 131
           L +  NP+
Sbjct: 118 LCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 65.1 bits (159), Expect = 3e-13
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 5/135 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
               + LDL   K+      L   +     ++ S N++  L      + L  LL+  N+I
Sbjct: 18  AVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRI 76

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDVP-CELSSL 118
             +       L  L+ L L NN + E+     +  L +L  L +  N +T+     L  +
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI 136

Query: 119 FHLKSL-FLGGNPIK 132
           + +  +  L    +K
Sbjct: 137 YKVPQVRVLDFQKVK 151

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 64.4 bits (157), Expect = 5e-13
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
            + ++ L L + K     +  L  +  +L  L+L    L  +        L  L L  N+
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR 82

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSS--NVGDLINLAILDLSDNELTDVP 112
           I    +     L  L+ LNL  NK+ ++S+   +  L  L  LDL + E+T++ 
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 61.7 bits (150), Expect = 5e-12
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 5/115 (4%)

Query: 25  DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84
            +R L   N   N   +  +  +  NL  L L    + ++ N     L KL  L L  N+
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENR 82

Query: 85  ISEVSSNVGD-LINLAILDLSDNELTDVP--CELSSLFHLKSLFLGGNPIKTVRN 136
           I      + + L NL  L+LS N+L D+     L  L  LKSL L    +  + +
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 9/120 (7%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
              +L+ L L +  L   S+     +  L +L LS N++      +     NLTHL L  
Sbjct: 47  EFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104

Query: 59  NKINNMEN-DYFLTLTKLSLLNLKNNKISEVSSNVGDLI----NLAILDLSDNELTDVPC 113
           NK+ ++   +    L  L  L+L N +++ ++     +      L  LD  D E  + P 
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 64  MENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKS 123
           + N     + +L L N K+N   ++     + +NL  L L +  L  V   L  L  LK 
Sbjct: 18  LRNRTPAAVRELVLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKK 75

Query: 124 LFLGGNPIKTVRNDILQ 140
           L L  N I    + + +
Sbjct: 76  LELSENRIFGGLDMLAE 92

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 63.9 bits (156), Expect = 5e-13
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
            S +K L L +++     L  L  +   L  L+     LT +        L  L L  N+
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR 75

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSS--NVGDLINLAILDLSDNELTDVP 112
           ++            L+ LNL  NKI ++S+   +  L NL  LDL + E+T++ 
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 47  DCKNLTHLLLGFNKINNMENDYFL-TLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSD 105
              ++  L+L  ++ N  + +       +L  L+  N  ++ ++ N+  L  L  L+LSD
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-NLPKLNKLKKLELSD 73

Query: 106 NELTDV-PCELSSLFHLKSLFLGGNPIK 132
           N ++           +L  L L GN IK
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 65.6 bits (161), Expect = 1e-12
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 5/132 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFI-DMRSL-TELNLSYNQLT-MLPVCTDCKNLTHLLLGF 58
           L +L  +    N++ S ++P        L T + +S N+LT  +P      NL  + L  
Sbjct: 148 LPNLVGITFDGNRI-SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELT-DVPCELSS 117
           N +    +  F +      ++L  N ++     VG   NL  LDL +N +   +P  L+ 
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 118 LFHLKSLFLGGN 129
           L  L SL +  N
Sbjct: 267 LKFLHSLNVSFN 278

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 16/138 (11%)

Query: 2   LSHLKT-LDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLPVC-TDCKNLTHLLLGF 58
            S L T + +S N+L +  +P      +L  ++LS N L     V     KN   + L  
Sbjct: 172 FSKLFTSMTISRNRL-TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 59  NKIN----NMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVP 112
           N +      +          L+ L+L+NN+I   +   +  L  L  L++S N L  ++P
Sbjct: 231 NSLAFDLGKVGL-----SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 113 CELSSLFHLKSLFLGGNP 130
            +  +L          N 
Sbjct: 286 -QGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 60.6 bits (148), Expect = 5e-11
 Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 8/136 (5%)

Query: 2   LSHLKTLDLSHNKLV-SDSLPLFI-DMRSLTELNLS-YNQLT-MLPVC-TDCKNLTHLLL 56
              +  LDLS   L     +P  + ++  L  L +   N L   +P        L +L +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 57  GFNKINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCE 114
               ++    D+   +  L  L+   N +S  +  ++  L NL  +    N ++  +P  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 115 LSSLFHL-KSLFLGGN 129
             S   L  S+ +  N
Sbjct: 169 YGSFSKLFTSMTISRN 184

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 58.8 bits (143), Expect = 5e-11
 Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 26/146 (17%)

Query: 6   KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLG-FNKINNM 64
             L+L  NKL S    +F  +  LT+L+LS NQ+  LP             G F+K    
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD------------GVFDK---- 74

Query: 65  ENDYFLTLTKLSLLNLKNNKISEVSSNVGD-LINLAILDLSDNELTDVPCE-LSSLFHLK 122
                  LTKL++L L  NK+  + + V D L  L  L L  N+L  VP      L  L+
Sbjct: 75  -------LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127

Query: 123 SLFLGGNPIKTVRNDILQDSKRIISH 148
            ++L  NP       I   S+ +  +
Sbjct: 128 KIWLHTNPWDCSCPRIDYLSRWLNKN 153

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG 57
           L+ L  L LS N++   SLP  +F  +  LT L L  N+L  LP  V      L  L L 
Sbjct: 51  LTQLTKLSLSQNQIQ--SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108

Query: 58  FNKINNMENDYFLTLTKLSLLNLKNN 83
            N++ ++ +  F  LT L  + L  N
Sbjct: 109 TNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.5 bits (146), Expect = 8e-11
 Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 22/121 (18%)

Query: 12  HNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLT 71
                 DSL       +LTEL +                          + ++E      
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQ---------------------QHLQHLELRDLRG 54

Query: 72  LTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNP 130
           L +L  L +  + +  V+ +       L+ L+LS N L  +  +      L+ L L GNP
Sbjct: 55  LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP 114

Query: 131 I 131
           +
Sbjct: 115 L 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.3 bits (135), Expect = 2e-09
 Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 25/110 (22%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFN 59
             +L  L + + + +   L       +  L  L +  + L  +                 
Sbjct: 30  AENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVA---------------- 72

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELT 109
                  D F    +LS LNL  N +  +S      ++L  L LS N L 
Sbjct: 73  ------PDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 5/121 (4%)

Query: 43  PVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK-ISEVSSNV-GDLINLAI 100
             C      + L    +   +    +      L+ L ++N + +  +       L  L  
Sbjct: 3   DACC-PHGSSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 101 LDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQ 159
           L +  + L  V  +       L  L L  N ++++    +Q        +  + L   C 
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120

Query: 160 N 160
            
Sbjct: 121 L 121

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.2 bits (141), Expect = 5e-10
 Identities = 34/164 (20%), Positives = 53/164 (32%), Gaps = 34/164 (20%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDM----RSLTELNLSYNQLT---------MLPVCTD-- 47
             L T+ LS N     +    ID       L  L L  N L           L       
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153

Query: 48  ----CKNLTHLLLGFNKINN--MEN--DYFLTLTKLSLLNLKNNKISE--VSSNVGDLI- 96
                  L  ++ G N++ N  M+     F +   L  + +  N I    +   + + + 
Sbjct: 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213

Query: 97  ---NLAILDLSDNELTDVPCE-----LSSLFHLKSLFLGGNPIK 132
               L +LDL DN  T +        L S  +L+ L L    + 
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 29/157 (18%), Positives = 47/157 (29%), Gaps = 28/157 (17%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDM----RSLTELNLSYNQLTMLPVCT-------DCKNL 51
             L+++    N+L + S+  +       R L  + +  N +    +          C+ L
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 52  THLLLGFNKINN--MEN--DYFLTLTKLSLLNLKNNKIS-----EVSSNVGDLIN--LAI 100
             L L  N   +           +   L  L L +  +S      V      L N  L  
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278

Query: 101 LDLSDNELTDVPCEL------SSLFHLKSLFLGGNPI 131
           L L  NE+               +  L  L L GN  
Sbjct: 279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 34/145 (23%)

Query: 5   LKTLDLSHNKLVSDSLPLFID----MRSLTELNLSYNQLT---------MLPVCTDCKNL 51
           ++   L  + + ++             S+ E+ LS N +           +       +L
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK---DL 62

Query: 52  THLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV 111
                       ++++    L  L    L                 L  + LSDN     
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQA-LLKCP------------KLHTVRLSDNAFGPT 109

Query: 112 PCE-----LSSLFHLKSLFLGGNPI 131
             E     LS    L+ L+L  N +
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGL 134

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 35/137 (25%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFI-----DMRSLTELNLSYNQLT---------MLPVCTDC 48
             L T+ +  N +  + +   +       + L  L+L  N  T          L      
Sbjct: 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-- 244

Query: 49  KNLTHLLLGFNKINN---------MENDYFLTLTKLSLLNLKNNKISE------VSSNVG 93
            NL  L L    ++                + L     L L+ N+I         +    
Sbjct: 245 -NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT---LRLQYNEIELDAVRTLKTVIDE 300

Query: 94  DLINLAILDLSDNELTD 110
            + +L  L+L+ N  ++
Sbjct: 301 KMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 25/168 (14%), Positives = 46/168 (27%), Gaps = 39/168 (23%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDM----RSLTELNLSYNQL------------TMLPVCT 46
             +K + LS N + +++     +     + L     S                 +L    
Sbjct: 32  DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91

Query: 47  DCKNLTHLLLGFNKINNMENDYFLTL----TKLSLLNLKNNKISE--------------V 88
            C  L  + L  N       +  +      T L  L L NN +                V
Sbjct: 92  KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151

Query: 89  SSNVGDLINLAILDLSDNELTDVPCE-----LSSLFHLKSLFLGGNPI 131
           +    +   L  +    N L +   +       S   L ++ +  N I
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI 199

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 53.4 bits (129), Expect = 4e-09
 Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 13/128 (10%)

Query: 28  SLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKI 85
           S T ++ S   L  +P  + T       L L  N+I  +E   F  LT+L+ L+L NN++
Sbjct: 10  SGTTVDCSGKSLASVPTGIPTT---TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66

Query: 86  SEVSSNVGD-LINLAILDLSDNELTDVPC----ELSSLFHLKSLFLGGNPIKTVRNDILQ 140
           + + + V D L  L  L L+DN+L  +P      L SL H   ++L  NP     +DIL 
Sbjct: 67  TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH---IWLLNNPWDCACSDILY 123

Query: 141 DSKRIISH 148
            S+ I  H
Sbjct: 124 LSRWISQH 131

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 6   KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINN 63
           + L L  N++      +F  +  LT L+L  NQLT+LP  V      LT L L  N++ +
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 64  MENDYFLTLTKLSLLNLKNN 83
           +    F  L  L+ + L NN
Sbjct: 93  IPRGAFDNLKSLTHIWLLNN 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 13/128 (10%)

Query: 28  SLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKI 85
             T +N    +L  +P  + TD      L L  N+I  +E   F  L  L  L   +NK+
Sbjct: 13  DQTLVNCQNIRLASVPAGIPTD---KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL 69

Query: 86  SEVSSNVGD-LINLAILDLSDNELTDVPC----ELSSLFHLKSLFLGGNPIKTVRNDILQ 140
           + + + V D L  L  LDL+DN L  +P      L SL H   ++L  NP      DI+ 
Sbjct: 70  TAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH---IYLYNNPWDCECRDIMY 126

Query: 141 DSKRIISH 148
               +  H
Sbjct: 127 LRNWVADH 134

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 6   KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINN 63
           + L L++N++      +F  + +L +L  + N+LT +P  V      LT L L  N + +
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95

Query: 64  MENDYFLTLTKLSLLNLKNN 83
           +    F  L  L+ + L NN
Sbjct: 96  IPRGAFDNLKSLTHIYLYNN 115

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 40/189 (21%), Positives = 77/189 (40%), Gaps = 33/189 (17%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDM-----RSLTELNLSYNQLT---------MLPVCTDC 48
           +++ +L+LS N L   S    +        ++T L+L +N  +                 
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP-- 137

Query: 49  KNLTHLLLGFNKINNMENDYFLTL-----TKLSLLNLKNNKISEVS-SNVGDLI-----N 97
            ++T L L  N +    +D  + +       ++ LNL+ N ++  + + +   +     +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 98  LAILDLSDNELTDVPC-ELSSLF-----HLKSLFLGGNPIKTVRNDILQDSKRIISHIKT 151
           +  LDLS N L      EL+ +F     H+ SL L  N +     + L+  K  + H++T
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 152 SRLDYHCQN 160
             LDY    
Sbjct: 258 VYLDYDIVK 266

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 33/160 (20%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDM-----RSLTELNLSYNQLT---------MLPVCTDC 48
             + +LDLS N L S S    I        S+T LNLS N L          +L      
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI--P 79

Query: 49  KNLTHLLLGFNKINNMENDYFLTL-----TKLSLLNLKNNKISEVS-SNVGDLI-----N 97
            N+T L L  N ++   +D  +         +++L+L  N  S  S S           +
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 98  LAILDLSDNELTDVPCE-LSSLF-----HLKSLFLGGNPI 131
           +  L+L  N+L     + L  +      ++ SL L GN +
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 30/159 (18%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDM-----RSLTELNLSYNQLT-------MLPVCTDCKN 50
           + + +L+L  N L   S    I +      ++  LNL  N L           + +   +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 51  LTHLLLGFNKINNMENDYFLTL-----TKLSLLNLKNNKISE-----VSSNVGDLINLAI 100
           +T L L  N +          +       +  LNL  N +       +      L +L  
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 101 LDLSDNELTDVPCE--------LSSLFHLKSLFLGGNPI 131
           + L  + + ++  E          ++  +  +   G  I
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 34/172 (19%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDM-----RSLTELNLSYNQLT------MLPVCTDCKNL 51
           + + +LDLS N L   S      +       +  LNL  N L       +  +    K+L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 52  THLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDV 111
             + L ++ + NM  +    L         N +             + ++D +  E+   
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAA----FPNIQ------------KIILVDKNGKEIHPS 299

Query: 112 PCEL------SSLFHLKSLFLGGNPIKTV-RNDILQDSKRIISHIKTSRLDY 156
                               L    +    ++    +   I   ++ S    
Sbjct: 300 HSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTC 351

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 27/156 (17%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDM-----RSLTELNLSYNQLT------MLPVCTDCKNL 51
           + L+ L L  NKL    +             L  L +    +T      +  V    ++L
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286

Query: 52  THLLLGFNKINNMENDYFL-----TLTKLSLLNLKNNKISE-----VSSNVGDLINLAIL 101
             L L  N++ +               +L  L +K+   +       SS +     L  L
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346

Query: 102 DLSDNELTDVPCEL------SSLFHLKSLFLGGNPI 131
            +S+N L D                L+ L+L    +
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 34/156 (21%), Positives = 53/156 (33%), Gaps = 27/156 (17%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMR-----SLTELNLSYNQLT------MLPVCTDCKNL 51
             L+ L LS N L    L L  +        L +L L Y  L+      +  V     + 
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172

Query: 52  THLLLGFNKINNMENDYF---LTLTKLSL--LNLKNNKISE-----VSSNVGDLINLAIL 101
             L +  N IN          L  +   L  L L++  ++      +   V    +L  L
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232

Query: 102 DLSDNELTDVPCE------LSSLFHLKSLFLGGNPI 131
            L  N+L DV         L     L++L++    I
Sbjct: 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 29/155 (18%), Positives = 49/155 (31%), Gaps = 26/155 (16%)

Query: 4   HLKTLDLSHNKLVSDSLPLFIDM----RSLTELNLSYNQLTMLPVCTDC-------KNLT 52
            L+ L L    + SD+      +     SL EL L  N+L  + +   C         L 
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 53  HLLLGFNKINNMENDYF----LTLTKLSLLNLKNNKIS-EVSSNVGDLI-----NLAILD 102
            L +    I                 L  L+L  N++  E +  + + +      L  L 
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 103 LSDNELTDVPCE-----LSSLFHLKSLFLGGNPIK 132
           +     T   C      L+    L  L +  N ++
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 30/158 (18%), Positives = 48/158 (30%), Gaps = 30/158 (18%)

Query: 2   LSHLKTLDLSHNKLVSDSL----PLFIDMRSLTELNLSYNQLT---------MLPVCTDC 48
           L   + + L    L                +L ELNL  N+L           L   +  
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS-- 84

Query: 49  KNLTHLLLGFNKINNME----NDYFLTLTKLSLLNLKNNKISEVS-SNVGDLI-----NL 98
             +  L L    +        +    TL  L  L+L +N + +     + + +      L
Sbjct: 85  CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL 144

Query: 99  AILDLSDNELTDVPCE-----LSSLFHLKSLFLGGNPI 131
             L L    L+   CE     L +    K L +  N I
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 23/152 (15%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFID-MRSLTELNLSYNQLT------MLPVCTDCKNLTHLL 55
             +++LD+   +L        +  ++    + L    LT      +         L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 56  LGFNKINNMENDYFLTL-----TKLSLLNLKNNKISE-----VSSNVGDLINLAILDLSD 105
           L  N++ ++     L        K+  L+L+N  ++      +SS +  L  L  L LSD
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 106 NELTDVPCE------LSSLFHLKSLFLGGNPI 131
           N L D   +      L     L+ L L    +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 29/156 (18%), Positives = 51/156 (32%), Gaps = 27/156 (17%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDM-----RSLTELNLSYNQLT------MLPVCTDCKNL 51
             LK L L+ N+L  +   L  +        L  L +     T         V    + L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 52  THLLLGFNKINNMENDYF-----LTLTKLSLLNLKNNKISE-----VSSNVGDLINLAIL 101
             L +  N++ +              + L +L L +  +S+     +++ +    +L  L
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403

Query: 102 DLSDNELTDVPCEL------SSLFHLKSLFLGGNPI 131
           DLS+N L D                L+ L L     
Sbjct: 404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 29/158 (18%), Positives = 47/158 (29%), Gaps = 30/158 (18%)

Query: 3   SHLKTLDLSHNKLVSDSL----PLFIDMRSLTELNLSYNQL---------TMLPVCTDCK 49
             L+ L L +  L + S      +        EL +S N +           L       
Sbjct: 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP--C 199

Query: 50  NLTHLLLGFNKINNMENDYF----LTLTKLSLLNLKNNKISE------VSSNVGDLINLA 99
            L  L L    + +           +   L  L L +NK+ +          +     L 
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 100 ILDLSDNELTDVPCE-----LSSLFHLKSLFLGGNPIK 132
            L + +  +T   C      L +   LK L L GN + 
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 46/196 (23%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDM-----RSLTELNLSYNQLT---------MLPVCT 46
           +    + L L  N L  ++     D+       +T L LS N LT          L   T
Sbjct: 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183

Query: 47  DCKNLTHLLLGFNKINN----------MENDYFLTLTKLSLLNLKNNKISE-----VSSN 91
              ++THL L    + +            N       +L  LN+  N   +     ++  
Sbjct: 184 ---SVTHLSLLHTGLGDEGLELLAAQLDRN------RQLQELNVAYNGAGDTAALALARA 234

Query: 92  VGDLINLAILDLSDNELTDVPCE--------LSSLFHLKSLFLGGNPIKTVRNDILQDSK 143
             +  +L +L L  NEL+    +              +      G  +    + IL + +
Sbjct: 235 AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQ 294

Query: 144 RIISHIKTSRLDYHCQ 159
           R ++    +R+  H +
Sbjct: 295 RNLNSWDRARVQRHLE 310

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 39/162 (24%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDM-----RSLTELNLSYNQLT------MLPVCTDCK 49
           +LS L+ L+L+  ++      +   +      +L E+NL+  QL       +LPV     
Sbjct: 70  VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV---FL 126

Query: 50  NLTHLLLGFNKINN----------MENDYFLTLTKLSLLNLKNNKISEV-----SSNVGD 94
               L L  N +            + +       +++ L L NN ++          +  
Sbjct: 127 RARKLGLQLNSLGPEACKDLRDLLLHDQ-----CQITTLRLSNNPLTAAGVAVLMEGLAG 181

Query: 95  LINLAILDLSDNELTDVPCE-----LSSLFHLKSLFLGGNPI 131
             ++  L L    L D   E     L     L+ L +  N  
Sbjct: 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 26/153 (16%)

Query: 2   LSHLKTLDLSH--NKLVSDSLPLFIDMRSLTELNLSYNQLT---------MLPVCTDCKN 50
           L   + LD      +  +      + + SL +LNL+  ++T         +L        
Sbjct: 46  LPPSELLDHLFFHYEFQNQRFSAEV-LSSLRQLNLAGVRMTPVKCTVVAAVLGSGR--HA 102

Query: 51  LTHLLLGFNKINNMENDYFLT-LTKLSLLNLKNNKISEVSSNV------GDLINLAILDL 103
           L  + L   +++       L    +   L L+ N +   +          D   +  L L
Sbjct: 103 LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL 162

Query: 104 SDNELTDVPCE-----LSSLFHLKSLFLGGNPI 131
           S+N LT          L+    +  L L    +
Sbjct: 163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 28/167 (16%), Positives = 52/167 (31%), Gaps = 38/167 (22%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDM----RSLTELNLSYNQLT------MLPVCTDCKNLT 52
           + +  L L H  L  + L L        R L ELN++YN         +     +  +L 
Sbjct: 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLE 242

Query: 53  HLLLGFNKINNM-------ENDYFLTLTKLSLLNLKNNKISEVSS--------------- 90
            L L FN++++                 ++ +   +   +SE  S               
Sbjct: 243 LLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDR 302

Query: 91  -NVGDLINLAILDLSDNELTDVPCE-----LSSLFHLKSLFLGGNPI 131
             V   + L + DL D+    +        L     +++L       
Sbjct: 303 ARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 17/182 (9%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFID-MRSLTELNLSY-NQLT---MLPVCTDCKNLTHLLL 56
            + L+ + L    +  D L L     ++   L LS     +   +  +   C+NL  L L
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163

Query: 57  GFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD---------LINLAILDLSDNE 107
             + ++++   +       +  +L +  IS ++S V             NL  L L+   
Sbjct: 164 RESDVDDVSGHWLSHFPD-TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222

Query: 108 -LTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGM 166
            L  +   L     L+ L  GG     VR D+       +S  K  R      +     +
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYT-AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYL 281

Query: 167 SS 168
            +
Sbjct: 282 PA 283

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 24/141 (17%), Positives = 43/141 (30%), Gaps = 24/141 (17%)

Query: 2   LSHLKTLDLSHNKLVSDSLP--LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFN 59
             +LK+L++    L    +   L  D+ +L +L L                   L     
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD-MNVFRPLFSK-- 248

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKIS----EVSSNVGDLINLAILDLSDNELTDVPCE- 114
                          L  L + + +      E+      L  L  +D+S   LTD     
Sbjct: 249 ----------DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARL 298

Query: 115 ----LSSLFHLKSLFLGGNPI 131
               +  + HLK + +  N +
Sbjct: 299 LLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 39.9 bits (92), Expect = 5e-04
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFID----MRSLTELNLSYNQLT 40
           +L  L+T+D+S   L  +   L +D    ++ L  +N+ YN L+
Sbjct: 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 17/142 (11%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSY----NQLTMLPVCTDCKNLTHLLLG 57
            S L+ L L   +L    +       +L  LNLS     ++  +  + + C  L  L L 
Sbjct: 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176

Query: 58  FNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGD---------LINLAILDLSD-NE 107
           +    +    +           +    +S    N+             NL  LDLSD   
Sbjct: 177 WCF--DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234

Query: 108 LTDVPCE-LSSLFHLKSLFLGG 128
           L +   +    L +L+ L L  
Sbjct: 235 LKNDCFQEFFQLNYLQHLSLSR 256

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 27/134 (20%)

Query: 6   KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNME 65
           + LDL   +   D +   ID+  L   +     L ++    +   L  L L  N++    
Sbjct: 130 QALDLKGLRSDPDLVAQNIDV-VLNRRSCMAATLRII--EENIPELLSLNLSNNRLYR-- 184

Query: 66  NDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSL--FHLKS 123
                              + ++SS V    NL IL+LS NEL     EL  +    L+ 
Sbjct: 185 -------------------LDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEE 224

Query: 124 LFLGGNPIKTVRND 137
           L+L GN +     D
Sbjct: 225 LWLDGNSLCDTFRD 238

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.87
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.85
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.83
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.83
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.83
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.82
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.82
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.78
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.78
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.76
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.73
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.72
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.71
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.71
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.65
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.64
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.61
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.47
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.47
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.47
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.45
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.35
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.33
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.22
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.17
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.02
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.56
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.49
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.25
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.11
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.09
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.08
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.05
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.86
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.78
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.69
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.51
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.25
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.24
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.87
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.8

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=6.2e-24  Score=179.81  Aligned_cols=211  Identities=17%  Similarity=0.182  Sum_probs=174.6

Q ss_pred             CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      .++++.|++++|.+..  +|. +.++++|++|++++|.++.+|. +..+++|++|++++|.+..++. .+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSS--CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCG-GGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchh--cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcH-HHhcCcCCCEEE
Confidence            3679999999999986  776 8889999999999999998884 8899999999999999997654 588999999999


Q ss_pred             eecCcC-ccccccccC---------CCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhh
Q psy3787          80 LKNNKI-SEVSSNVGD---------LINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHI  149 (263)
Q Consensus        80 l~~~~l-~~lp~~~~~---------l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l  149 (263)
                      +++|++ ..+|..+..         +++|++|++++|.++.+|..++.+++|+.|++++|.+++++..+...  ..++.+
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l--~~L~~L  234 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL--PKLEEL  234 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC--TTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccC--CCCCEE
Confidence            999755 477876654         99999999999999999989999999999999999999998764333  467788


Q ss_pred             hCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc---cccccChhHHhhcCCccceeEEEeccCCccc-ccC
Q psy3787         150 KTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC---KVINIPESVYMRGMSSQECTIEINIDKYKLD-RTK  225 (263)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~---~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~-~ip  225 (263)
                      +++.+.+               .+.+|..+..+++|++|+++   ..+.+|.++..+.    +|+. |++++|.+. .+|
T Consensus       235 ~Ls~n~~---------------~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~----~L~~-L~L~~n~~~~~iP  294 (328)
T 4fcg_A          235 DLRGCTA---------------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT----QLEK-LDLRGCVNLSRLP  294 (328)
T ss_dssp             ECTTCTT---------------CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT----TCCE-EECTTCTTCCCCC
T ss_pred             ECcCCcc---------------hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC----CCCE-EeCCCCCchhhcc
Confidence            8877664               56677789999999999999   4578888876655    5999 999998866 677


Q ss_pred             ccccccccccccc
Q psy3787         226 TLTLCKVINIPES  238 (263)
Q Consensus       226 ~~~~~~~~~l~~~  238 (263)
                      .. ..++.++..+
T Consensus       295 ~~-l~~L~~L~~l  306 (328)
T 4fcg_A          295 SL-IAQLPANCII  306 (328)
T ss_dssp             GG-GGGSCTTCEE
T ss_pred             HH-HhhccCceEE
Confidence            53 3333443333

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=1.2e-24  Score=183.01  Aligned_cols=236  Identities=15%  Similarity=0.157  Sum_probs=161.6

Q ss_pred             CCCCEEEeecCccCC--CCccccCCCCCCcEEEecC-CCCC-CCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccE
Q psy3787           3 SHLKTLDLSHNKLVS--DSLPLFIDMRSLTELNLSY-NQLT-MLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSL   77 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~l~-~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~   77 (263)
                      .+++.|++++|.+.+  ...+.+.++++|++|++++ |.+. .+| .+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467778888887764  2233377788888888884 6665 444 4777788888888888877555666777888888


Q ss_pred             EEeecCcCc-cccccccCCCCcCEEEccCCcCC-CccccccCCC-cccEEEecCCCCCC-cchHHHHhHHHHhhhhhCCC
Q psy3787          78 LNLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSSLF-HLKSLFLGGNPIKT-VRNDILQDSKRIISHIKTSR  153 (263)
Q Consensus        78 L~l~~~~l~-~lp~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~-~L~~L~l~~n~l~~-~~~~~~~~~~~~l~~l~~~~  153 (263)
                      |++++|.++ .+|..+..+++|++|++++|.++ .+|..++.++ .|+.|++++|.+++ +|..+....   ++.++++.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~---L~~L~Ls~  206 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---LAFVDLSR  206 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC---CSEEECCS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc---ccEEECcC
Confidence            888888877 66777777888888888888777 5677777776 78888888887775 443332221   55566655


Q ss_pred             Ccccccc---------cCCCCCCCcCCcccccccccccCCcceeccc--ccc-ccChhHHhhcCCccceeEEEeccCCcc
Q psy3787         154 LDYHCQN---------VDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVI-NIPESVYMRGMSSQECTIEINIDKYKL  221 (263)
Q Consensus       154 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~-~l~~~~~~~~~~~~~L~~~L~ls~n~l  221 (263)
                      +.+.-..         +..-...... ....++.+..+++|++|+++  .++ .+|..+..+.    +|+. |++++|++
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~----~L~~-L~Ls~N~l  280 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK----FLHS-LNVSFNNL  280 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT----TCCE-EECCSSEE
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcccCcCChHHhcCc----CCCE-EECcCCcc
Confidence            5431000         0000000000 22334447778999999999  775 7787776655    4999 99999999


Q ss_pred             c-ccCccccccccccccccccCCceEEec
Q psy3787         222 D-RTKTLTLCKVINIPESVYMNRPFALTY  249 (263)
Q Consensus       222 ~-~ip~~~~~~~~~l~~~~~~~~~~~~~~  249 (263)
                      + .+|..  ..+.++..+.+.+||.++..
T Consensus       281 ~~~ip~~--~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          281 CGEIPQG--GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             EEECCCS--TTGGGSCGGGTCSSSEEEST
T ss_pred             cccCCCC--ccccccChHHhcCCCCccCC
Confidence            8 77775  45788889999999988764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=5.6e-24  Score=187.58  Aligned_cols=225  Identities=21%  Similarity=0.207  Sum_probs=187.5

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      ++++.|++++|++.......|.++++|+.|++++|.++.++  .+..+++|++|++++|.+..+++..|..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            46899999999998833344999999999999999999765  5888999999999999999999888999999999999


Q ss_pred             ecCcCccccc-cccCCCCcCEEEccC-CcCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccc
Q psy3787          81 KNNKISEVSS-NVGDLINLAILDLSD-NELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYH  157 (263)
Q Consensus        81 ~~~~l~~lp~-~~~~l~~L~~L~l~~-n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~  157 (263)
                      ++|+++.+|. .+..+++|+.|++++ +.+..++. .+..+++|+.|++++|.++++|. ...  ...++.|+++.+.+ 
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~--l~~L~~L~Ls~N~l-  230 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTP--LVGLEELEMSGNHF-  230 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTT--CTTCCEEECTTSCC-
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccc--cccccEEECcCCcC-
Confidence            9999998876 578999999999998 46667765 48899999999999999999863 111  34677788877774 


Q ss_pred             ccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccccccc
Q psy3787         158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINI  235 (263)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l  235 (263)
                                    .+..+..+..+++|+.|+++  .++.++...+..   +++|+. |++++|+++.+|...+..+.++
T Consensus       231 --------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~-L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          231 --------------PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG---LASLVE-LNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             --------------SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT---CTTCCE-EECCSSCCSCCCTTSSTTCTTC
T ss_pred             --------------cccCcccccCccCCCEEEeCCCcCceECHHHhcC---CCCCCE-EECCCCcCCccChHHhccccCC
Confidence                          34446678999999999999  787776654443   337999 9999999999998888778889


Q ss_pred             ccccccCCceEEec
Q psy3787         236 PESVYMNRPFALTY  249 (263)
Q Consensus       236 ~~~~~~~~~~~~~~  249 (263)
                      ..+.+.+||+.+..
T Consensus       293 ~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          293 VELHLHHNPWNCDC  306 (452)
T ss_dssp             CEEECCSSCEECST
T ss_pred             CEEEccCCCcCCCC
Confidence            99999999987654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=4.8e-24  Score=187.37  Aligned_cols=225  Identities=20%  Similarity=0.223  Sum_probs=186.6

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      ++++.|++++|++.......|.++++|+.|++++|.++.++  .+..+++|++|++++|.++.+++..|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            46899999999998843344999999999999999999765  5888999999999999999999888999999999999


Q ss_pred             ecCcCccccc-cccCCCCcCEEEccCC-cCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccc
Q psy3787          81 KNNKISEVSS-NVGDLINLAILDLSDN-ELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYH  157 (263)
Q Consensus        81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n-~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~  157 (263)
                      ++|.++.++. .+..+++|++|++++| .+..++. .+..+++|+.|++++|.++.+|. ...  ...|+.|+++.+.+ 
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~--l~~L~~L~Ls~N~l-  219 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTP--LIKLDELDLSGNHL-  219 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTT--CSSCCEEECTTSCC-
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCC--CcccCEEECCCCcc-
Confidence            9999998866 5788999999999984 5666655 58899999999999999999874 111  34677777877763 


Q ss_pred             ccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccccccc
Q psy3787         158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINI  235 (263)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l  235 (263)
                                    ....+..+..+++|+.|+++  .++.++...+..   +++|+. |++++|+++.+|...+..+.++
T Consensus       220 --------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~-L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          220 --------------SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN---LQSLVE-INLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             --------------CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT---CTTCCE-EECTTSCCCCCCTTTTSSCTTC
T ss_pred             --------------CccChhhhccCccCCEEECCCCceeEEChhhhcC---CCCCCE-EECCCCCCCccChhHhccccCC
Confidence                          33345678899999999999  888777655543   347999 9999999999998888778889


Q ss_pred             ccccccCCceEEec
Q psy3787         236 PESVYMNRPFALTY  249 (263)
Q Consensus       236 ~~~~~~~~~~~~~~  249 (263)
                      ..+.+.+||+.+..
T Consensus       282 ~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          282 ERIHLHHNPWNCNC  295 (440)
T ss_dssp             CEEECCSSCEECSS
T ss_pred             CEEEcCCCCccCCC
Confidence            99999999987643

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.91  E-value=2.6e-23  Score=175.96  Aligned_cols=221  Identities=18%  Similarity=0.275  Sum_probs=126.1

Q ss_pred             CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCC-c-CCCCCCCCcEEEecCCCCCCCc----------------
Q psy3787           4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTML-P-VCTDCKNLTHLLLGFNKINNME----------------   65 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~-~~~~~~~L~~L~l~~n~~~~~~----------------   65 (263)
                      +++.|++++|+++......+.++++|++|++++|.++.+ | .+..+++|++|++++|.++.++                
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~  132 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE  132 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCc
Confidence            456666666666552222266666666666666666544 2 3555566666666666555443                


Q ss_pred             -----hhhhhCCCCccEEEeecCcCc---cccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchH
Q psy3787          66 -----NDYFLTLTKLSLLNLKNNKIS---EVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRND  137 (263)
Q Consensus        66 -----~~~~~~l~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~  137 (263)
                           +..+..+++|++|++++|.++   ..+..+..+++|+++++++|.++.+|..+.  ++|+.|++++|.++++++.
T Consensus       133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~  210 (330)
T 1xku_A          133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAA  210 (330)
T ss_dssp             CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTG
T ss_pred             ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHH
Confidence                 334444444444444444443   123334444445555555554444443322  4455555555555544332


Q ss_pred             HHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEe
Q psy3787         138 ILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEIN  215 (263)
Q Consensus       138 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~  215 (263)
                      .+.. ...++.++++.+.+               .+..+..+..+++|++|+++  .++.+|.++....    +|+. |+
T Consensus       211 ~~~~-l~~L~~L~Ls~n~l---------------~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~----~L~~-L~  269 (330)
T 1xku_A          211 SLKG-LNNLAKLGLSFNSI---------------SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK----YIQV-VY  269 (330)
T ss_dssp             GGTT-CTTCCEEECCSSCC---------------CEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCS----SCCE-EE
T ss_pred             HhcC-CCCCCEEECCCCcC---------------ceeChhhccCCCCCCEEECCCCcCccCChhhccCC----CcCE-EE
Confidence            2221 12344444444432               22233467888999999999  8889988766554    5999 99


Q ss_pred             ccCCcccccCccccccc------cccccccccCCceEE
Q psy3787         216 IDKYKLDRTKTLTLCKV------INIPESVYMNRPFAL  247 (263)
Q Consensus       216 ls~n~l~~ip~~~~~~~------~~l~~~~~~~~~~~~  247 (263)
                      +++|+|+.+|...++..      ..+..+.+.+||...
T Consensus       270 l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            99999999988777643      445677888998543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=1.7e-23  Score=195.76  Aligned_cols=241  Identities=24%  Similarity=0.302  Sum_probs=161.9

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCC-CCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      +++|+.|++++|.+.+.....+.++++|+.|++++|.+. .+| .+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus       417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  496 (768)
T 3rgz_A          417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS  496 (768)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence            567888888888887632333788888888888888877 444 367778888888888888766666677788888888


Q ss_pred             eecCcCc-cccccccCCCCcCEEEccCCcCC-CccccccCCCcccEEEecCCCCCC-cchHHHHhH--------------
Q psy3787          80 LKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHLKSLFLGGNPIKT-VRNDILQDS--------------  142 (263)
Q Consensus        80 l~~~~l~-~lp~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~--------------  142 (263)
                      +++|+++ .+|.+++.+++|++|++++|.+. .+|..++.+++|+.+++++|.+.+ +|..++...              
T Consensus       497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~  576 (768)
T 3rgz_A          497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV  576 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred             ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence            8888877 66777777888888888888777 567777778888888888887764 665544321              


Q ss_pred             ------------------------------------------------------HHHhhhhhCCCCccc---------cc
Q psy3787         143 ------------------------------------------------------KRIISHIKTSRLDYH---------CQ  159 (263)
Q Consensus       143 ------------------------------------------------------~~~l~~l~~~~~~~~---------~~  159 (263)
                                                                            ...+..++++.+.+.         +.
T Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  656 (768)
T 3rgz_A          577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP  656 (768)
T ss_dssp             EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence                                                                  011222333333220         00


Q ss_pred             ccCCCCCCCcCCcccccccccccCCcceeccc--ccc-ccChhHHhhcCCccceeEEEeccCCccc-ccCcccccccccc
Q psy3787         160 NVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVI-NIPESVYMRGMSSQECTIEINIDKYKLD-RTKTLTLCKVINI  235 (263)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~-~l~~~~~~~~~~~~~L~~~L~ls~n~l~-~ip~~~~~~~~~l  235 (263)
                      .+..-..+.....+.+|..++.+++|++||++  +++ .+|..+..+..    |+. |++++|+++ .||...  ++..+
T Consensus       657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~----L~~-L~ls~N~l~g~iP~~~--~~~~~  729 (768)
T 3rgz_A          657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM----LTE-IDLSNNNLSGPIPEMG--QFETF  729 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC----CSE-EECCSSEEEEECCSSS--SGGGS
T ss_pred             cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC----CCE-EECcCCcccccCCCch--hhccC
Confidence            00000011111145677777788888888888  554 67766665544    888 888888887 677654  35778


Q ss_pred             ccccccCCceEEec
Q psy3787         236 PESVYMNRPFALTY  249 (263)
Q Consensus       236 ~~~~~~~~~~~~~~  249 (263)
                      +...|.|||.+|..
T Consensus       730 ~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          730 PPAKFLNNPGLCGY  743 (768)
T ss_dssp             CGGGGCSCTEEEST
T ss_pred             CHHHhcCCchhcCC
Confidence            88899999988864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.90  E-value=5.5e-23  Score=174.09  Aligned_cols=231  Identities=16%  Similarity=0.243  Sum_probs=144.2

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCC-c-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTML-P-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      ++++.|++++|.+.......+.++++|++|++++|.++.+ | .+..+++|++|++++|.+..++...+   ++|++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEEC
Confidence            4577777777777762222377777777777777777755 2 46777777777777777776655432   56777777


Q ss_pred             ecCcCcccccc-ccCCCCcCEEEccCCcCCC---ccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcc
Q psy3787          81 KNNKISEVSSN-VGDLINLAILDLSDNELTD---VPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY  156 (263)
Q Consensus        81 ~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~---l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~  156 (263)
                      ++|.++.++.. +..+++|++|++++|.++.   .+..+..+ +|+.+++++|.++++|....    ..++.++++.+.+
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~----~~L~~L~l~~n~i  205 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP----ETLNELHLDHNKI  205 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC----SSCSCCBCCSSCC
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc----CCCCEEECCCCcC
Confidence            77777766543 5667777777777776652   23345555 66666666666666554332    1233444433332


Q ss_pred             cc---------cccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccC
Q psy3787         157 HC---------QNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTK  225 (263)
Q Consensus       157 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip  225 (263)
                      .-         ..+..-...........+..+..+++|++|+++  .++.+|..+..+.    +|+. |++++|+++.+|
T Consensus       206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~----~L~~-L~l~~N~l~~~~  280 (332)
T 2ft3_A          206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK----LLQV-VYLHTNNITKVG  280 (332)
T ss_dssp             CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCT----TCCE-EECCSSCCCBCC
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCc----cCCE-EECCCCCCCccC
Confidence            10         000000000000022233457888999999999  8889988766554    5998 999999999888


Q ss_pred             ccccccc------cccccccccCCceE
Q psy3787         226 TLTLCKV------INIPESVYMNRPFA  246 (263)
Q Consensus       226 ~~~~~~~------~~l~~~~~~~~~~~  246 (263)
                      ...++..      ..+..+.+.+||..
T Consensus       281 ~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          281 VNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             TTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             hhHccccccccccccccceEeecCccc
Confidence            7766542      44567788888854

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=2.7e-23  Score=175.86  Aligned_cols=203  Identities=19%  Similarity=0.197  Sum_probs=169.0

Q ss_pred             CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhh---------
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFL---------   70 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~---------   70 (263)
                      +++|++|++++|.+..  +|. +.++++|++|++++|.++.+| .+..+++|++|++++|...+..+..+.         
T Consensus       103 l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~  180 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ  180 (328)
T ss_dssp             GTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred             CCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence            6789999999999985  776 999999999999999999888 588999999999999876654444443         


Q ss_pred             CCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCC-cchHHHHhHHHHhhhh
Q psy3787          71 TLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKT-VRNDILQDSKRIISHI  149 (263)
Q Consensus        71 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~l~~l  149 (263)
                      .+++|++|++++|+++.+|..+..+++|++|++++|.++.+|..++.+++|+.|++++|.+.+ +|......  ..++.+
T Consensus       181 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l--~~L~~L  258 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRL  258 (328)
T ss_dssp             ESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC--CCCCEE
T ss_pred             cCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCC--CCCCEE
Confidence            489999999999999999999999999999999999999999889999999999999998777 55433222  367777


Q ss_pred             hCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc---cccccChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787         150 KTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC---KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT  226 (263)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~---~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~  226 (263)
                      +++.+.+               .+.+|..+..+++|++|+++   .++.+|+++..+..    |+. +++..+.+..++.
T Consensus       259 ~L~~n~~---------------~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~----L~~-l~l~~~~~~~l~~  318 (328)
T 4fcg_A          259 ILKDCSN---------------LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA----NCI-ILVPPHLQAQLDQ  318 (328)
T ss_dssp             ECTTCTT---------------CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT----TCE-EECCGGGSCC---
T ss_pred             ECCCCCc---------------hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC----ceE-EeCCHHHHHHHhh
Confidence            7766654               56778889999999999999   55899998887765    999 9999987776665


Q ss_pred             cc
Q psy3787         227 LT  228 (263)
Q Consensus       227 ~~  228 (263)
                      ..
T Consensus       319 ~~  320 (328)
T 4fcg_A          319 HR  320 (328)
T ss_dssp             --
T ss_pred             hh
Confidence            43

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=1e-22  Score=176.09  Aligned_cols=67  Identities=10%  Similarity=0.087  Sum_probs=48.6

Q ss_pred             ccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEE
Q psy3787         173 SEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFAL  247 (263)
Q Consensus       173 ~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~  247 (263)
                      ..++..+..+++|++|+++  .++.+|..+..+..    |+. |++++|+++.+|...   +.++..+.+.+||..+
T Consensus       285 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~----L~~-L~L~~N~i~~~~~~~---~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          285 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR----LEN-LYLDHNSIVTLKLST---HHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT----CSE-EECCSSCCCCCCCCT---TCCCSEEECCSSCEEH
T ss_pred             cccCcccCCCCCCCEEECCCCcceecCccccccCc----CCE-EECCCCccceeCchh---hccCCEEEcCCCCccc
Confidence            3445555677888888888  77788877766554    888 888888888776433   4667778888888655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=1.1e-22  Score=167.92  Aligned_cols=199  Identities=23%  Similarity=0.269  Sum_probs=157.2

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      +++++|++++|+++......+.++++|++|++++|.+..++  .+..+++|++|++++|.+..+++..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35899999999998733334889999999999999998766  4888999999999999999888888899999999999


Q ss_pred             ecCcCccccc-cccCCCCcCEEEccCCcCCC--ccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhh----hhhCCC
Q psy3787          81 KNNKISEVSS-NVGDLINLAILDLSDNELTD--VPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIIS----HIKTSR  153 (263)
Q Consensus        81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~----~l~~~~  153 (263)
                      ++|.++.++. .+..+++|++|++++|.++.  +|..++.+++|+.|++++|.+++++...+... ..+.    .++++.
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~ls~  186 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSL  186 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEEEECCS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhccccceeeecCC
Confidence            9999997765 58889999999999999986  67789999999999999999999876544432 2233    445555


Q ss_pred             CcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787         154 LDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD  222 (263)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~  222 (263)
                      +.                ...++.......+|++|+++  .++.+|.+.+...   ++|+. |++++|+++
T Consensus       187 n~----------------l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~-L~l~~N~~~  237 (276)
T 2z62_A          187 NP----------------MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRL---TSLQK-IWLHTNPWD  237 (276)
T ss_dssp             SC----------------CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTC---CSCCE-EECCSSCBC
T ss_pred             Cc----------------ccccCccccCCCcccEEECCCCceeecCHhHhccc---ccccE-EEccCCccc
Confidence            54                34455555555688899988  7788887665433   36888 999999776

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=1.6e-22  Score=184.13  Aligned_cols=222  Identities=18%  Similarity=0.214  Sum_probs=122.5

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      +++|+.|++++|.+.......|..+++|++|++++|.++.++  .+..+++|++|++++|.+..+++..|..+++|++|+
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence            345566666666555521122555666666666666655544  245556666666666666655555555556666666


Q ss_pred             eecCcCcccc-ccccCCCCcCEEEccCCcCCCccc---------------------------------------------
Q psy3787          80 LKNNKISEVS-SNVGDLINLAILDLSDNELTDVPC---------------------------------------------  113 (263)
Q Consensus        80 l~~~~l~~lp-~~~~~l~~L~~L~l~~n~l~~l~~---------------------------------------------  113 (263)
                      +++|.++.++ ..+..+++|++|++++|.++.++.                                             
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~  233 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE  233 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence            6666555443 235555556666655555543321                                             


Q ss_pred             ---------------cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCccccccc
Q psy3787         114 ---------------ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINID  178 (263)
Q Consensus       114 ---------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (263)
                                     .++.+++|+.|++++|.++++++..+.. ...|..|+++.+.                ...++..
T Consensus       234 L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~----------------l~~l~~~  296 (597)
T 3oja_B          234 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNR----------------LVALNLY  296 (597)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT-CSSCCEEECTTSC----------------CCEEECS
T ss_pred             CCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcC-ccCCCEEECCCCC----------------CCCCCcc
Confidence                           1222223333333333333321111111 0122222222222                3445556


Q ss_pred             ccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEEe
Q psy3787         179 KYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALT  248 (263)
Q Consensus       179 ~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~  248 (263)
                      +..+++|+.|+++  .++.+|.++..+..    |+. |++++|.++.+|...   +.++..+.+.+||+.+.
T Consensus       297 ~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~----L~~-L~L~~N~l~~~~~~~---~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          297 GQPIPTLKVLDLSHNHLLHVERNQPQFDR----LEN-LYLDHNSIVTLKLST---HHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             SSCCTTCCEEECCSSCCCCCGGGHHHHTT----CSE-EECCSSCCCCCCCCT---TCCCSEEECCSSCEEHH
T ss_pred             cccCCCCcEEECCCCCCCccCcccccCCC----CCE-EECCCCCCCCcChhh---cCCCCEEEeeCCCCCCh
Confidence            6678888888888  77888887766554    898 999999888777433   36677788888887643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=1e-22  Score=180.46  Aligned_cols=151  Identities=25%  Similarity=0.320  Sum_probs=110.8

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      ++++.|++++|+++......|.++++|++|++++|.++.++  .+..+++|++|++++|.+..+++..|..+++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            46788888888887732233888888888888888887553  4778888888888888888887777778888888888


Q ss_pred             ecCcCccc-cccccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCC
Q psy3787          81 KNNKISEV-SSNVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRL  154 (263)
Q Consensus        81 ~~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~  154 (263)
                      ++|+++.+ +..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+++++...+... ..++.+++..+
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n  186 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL-HGLIVLRLRHL  186 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC-TTCCEEEEESC
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc-CCCcEEeCCCC
Confidence            88888755 45677788888888888888765 4457788888888888888888776544332 34444444433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=2.3e-23  Score=177.84  Aligned_cols=225  Identities=17%  Similarity=0.224  Sum_probs=146.5

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      ++|++|++++|+++......+.++++|++|++++|.++.++  .+..+++|++|++++|.++++++..+..+++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            36778888888877622223778888888888888877654  3777788888888888888777777777888888888


Q ss_pred             ecCcCccccc--cccCCCCcCEEEccCC-cCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcc
Q psy3787          81 KNNKISEVSS--NVGDLINLAILDLSDN-ELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY  156 (263)
Q Consensus        81 ~~~~l~~lp~--~~~~l~~L~~L~l~~n-~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~  156 (263)
                      ++|+++.+|.  .+..+++|++|++++| .+..+ +..++.+++|+.|++++|.++++.+..+.. ...+++++++.+.+
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~l  210 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS-IQNVSHLILHMKQH  210 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT-CSEEEEEEEECSCS
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc-cccCCeecCCCCcc
Confidence            8888877765  5677778888888777 45555 345677777777777777777653332221 12344444433331


Q ss_pred             cccccCCCCCCCcCCccccccc-ccccCCcceeccc--ccc--------------------------------ccChhHH
Q psy3787         157 HCQNVDGGGMSSQESTSEINID-KYKLDRTKTLTLC--KVI--------------------------------NIPESVY  201 (263)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~--~~~--------------------------------~l~~~~~  201 (263)
                                      ..++.. +..+++|++|+++  .++                                .+|..+.
T Consensus       211 ----------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~  274 (353)
T 2z80_A          211 ----------------ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN  274 (353)
T ss_dssp             ----------------TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred             ----------------ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHh
Confidence                            111111 1223444444444  222                                2344444


Q ss_pred             hhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEEec
Q psy3787         202 MRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALTY  249 (263)
Q Consensus       202 ~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~~  249 (263)
                      .+    ++|+. |++++|+++.+|...+..+.++..+.+.+||..+..
T Consensus       275 ~l----~~L~~-L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          275 QI----SGLLE-LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             TC----TTCCE-EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cc----cCCCE-EECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            33    35998 999999999888877666778888888888866543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=1.2e-22  Score=189.91  Aligned_cols=240  Identities=20%  Similarity=0.225  Sum_probs=186.3

Q ss_pred             CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCC-CCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLT-MLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL   78 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~-~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L   78 (263)
                      +++|++|++++|.+.+. +|. +.++++|+.|++++|.++ .+| .+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus       393 ~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  471 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL  471 (768)
T ss_dssp             TCCCCEEECCSSEEEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cCCccEEECCCCccccc-cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence            56899999999999863 444 999999999999999998 445 48889999999999999998778889999999999


Q ss_pred             EeecCcCc-cccccccCCCCcCEEEccCCcCC-CccccccCCCcccEEEecCCCCCC-cchHHHHhHHHHhhhhhCCCCc
Q psy3787          79 NLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHLKSLFLGGNPIKT-VRNDILQDSKRIISHIKTSRLD  155 (263)
Q Consensus        79 ~l~~~~l~-~lp~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~l~~l~~~~~~  155 (263)
                      ++++|+++ .+|..+..+++|++|++++|.++ .+|.+++.+++|+.|++++|.+++ +|..+....  .++.++++.+.
T Consensus       472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~Ls~N~  549 (768)
T 3rgz_A          472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR--SLIWLDLNTNL  549 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT--TCCEEECCSSE
T ss_pred             EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC--CCCEEECCCCc
Confidence            99999999 77889999999999999999998 678889999999999999999996 676554443  67777777665


Q ss_pred             ccccccC-------------------------------------------------------------------------
Q psy3787         156 YHCQNVD-------------------------------------------------------------------------  162 (263)
Q Consensus       156 ~~~~~~~-------------------------------------------------------------------------  162 (263)
                      +.+..-.                                                                         
T Consensus       550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~  629 (768)
T 3rgz_A          550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD  629 (768)
T ss_dssp             EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred             cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence            5311000                                                                         


Q ss_pred             ------CCCCCCcCCcccccccccccCCcceeccc--ccc-ccChhHHhhcCCccceeEEEeccCCcccccCcccccccc
Q psy3787         163 ------GGGMSSQESTSEINIDKYKLDRTKTLTLC--KVI-NIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVI  233 (263)
Q Consensus       163 ------~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~-~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~  233 (263)
                            ....+.....+.+|.+++.++.|+.|+++  .++ .+|..+..+..    |+. ||+++|+++...+..+..+.
T Consensus       630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~----L~~-LdLs~N~l~g~ip~~l~~l~  704 (768)
T 3rgz_A          630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG----LNI-LDLSSNKLDGRIPQAMSALT  704 (768)
T ss_dssp             SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT----CCE-EECCSSCCEECCCGGGGGCC
T ss_pred             ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC----CCE-EECCCCcccCcCChHHhCCC
Confidence                  00001111134677778888888888888  664 77777766554    888 88888888843334555667


Q ss_pred             ccccccccCCceEEec
Q psy3787         234 NIPESVYMNRPFALTY  249 (263)
Q Consensus       234 ~l~~~~~~~~~~~~~~  249 (263)
                      .+..+.+++|+....+
T Consensus       705 ~L~~L~ls~N~l~g~i  720 (768)
T 3rgz_A          705 MLTEIDLSNNNLSGPI  720 (768)
T ss_dssp             CCSEEECCSSEEEEEC
T ss_pred             CCCEEECcCCcccccC
Confidence            7778888888765544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=4.6e-22  Score=176.28  Aligned_cols=227  Identities=20%  Similarity=0.263  Sum_probs=157.1

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      +++|++|++++|++.......|.++++|++|++++|.+..++  .+..+++|++|++++|.+..+.+..|..+++|+.|+
T Consensus        79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  158 (477)
T 2id5_A           79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT  158 (477)
T ss_dssp             CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred             CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence            678888899888888722223788888888888888887543  467777888888888877777766677777777777


Q ss_pred             eecCcCccccc-cccCCCCcCEEEccCCcCCCccc-cccCCCc------------------------ccEEEecCCCCCC
Q psy3787          80 LKNNKISEVSS-NVGDLINLAILDLSDNELTDVPC-ELSSLFH------------------------LKSLFLGGNPIKT  133 (263)
Q Consensus        80 l~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~------------------------L~~L~l~~n~l~~  133 (263)
                      +++|+++.++. .+..+++|+.|++++|.+..++. .+..+++                        |+.|++++|.++.
T Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  238 (477)
T 2id5_A          159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA  238 (477)
T ss_dssp             EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred             CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence            77777776654 35666777777777776665432 3445544                        4455555555555


Q ss_pred             cchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCcccee
Q psy3787         134 VRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECT  211 (263)
Q Consensus       134 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~  211 (263)
                      ++...+... ..|+.|+++.+.+               ....+..+..+++|++|+++  .++.++...+..   +++|+
T Consensus       239 ~~~~~~~~l-~~L~~L~Ls~n~l---------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~  299 (477)
T 2id5_A          239 VPYLAVRHL-VYLRFLNLSYNPI---------------STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG---LNYLR  299 (477)
T ss_dssp             CCHHHHTTC-TTCCEEECCSSCC---------------CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT---CTTCC
T ss_pred             cCHHHhcCc-cccCeeECCCCcC---------------CccChhhccccccCCEEECCCCccceECHHHhcC---cccCC
Confidence            554433322 3455566655552               22233347788899999999  777665443332   33699


Q ss_pred             EEEeccCCcccccCccccccccccccccccCCceEEe
Q psy3787         212 IEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALT  248 (263)
Q Consensus       212 ~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~  248 (263)
                      . |++++|+++.+|...+..+.++..+.+.+||..+.
T Consensus       300 ~-L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          300 V-LNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             E-EECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             E-EECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            9 99999999999988777778888999999997754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=6.2e-23  Score=172.55  Aligned_cols=216  Identities=17%  Similarity=0.172  Sum_probs=160.7

Q ss_pred             CCCcEEEecCCCCCC---Cc-CCCCCCCCcEEEecC-CCCCCCchhhhhCCCCccEEEeecCcCc-cccccccCCCCcCE
Q psy3787          27 RSLTELNLSYNQLTM---LP-VCTDCKNLTHLLLGF-NKINNMENDYFLTLTKLSLLNLKNNKIS-EVSSNVGDLINLAI  100 (263)
Q Consensus        27 ~~L~~L~l~~n~l~~---l~-~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~  100 (263)
                      .+++.|++++|.+..   +| .+..+++|++|++++ |.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            689999999999985   55 588999999999995 8888777777999999999999999998 78999999999999


Q ss_pred             EEccCCcCC-CccccccCCCcccEEEecCCCCCC-cchHHHHhHHHHhhhhhCCCCccccc---c-----cCCCCCCCcC
Q psy3787         101 LDLSDNELT-DVPCELSSLFHLKSLFLGGNPIKT-VRNDILQDSKRIISHIKTSRLDYHCQ---N-----VDGGGMSSQE  170 (263)
Q Consensus       101 L~l~~n~l~-~l~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~l~~l~~~~~~~~~~---~-----~~~~~~~~~~  170 (263)
                      |++++|.+. .+|..++.+++|++|++++|.+++ +|..+.... ..++.++++.+.+.-.   .     +..-..+...
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS-KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC-TTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh-hcCcEEECcCCeeeccCChHHhCCcccEEECcCCc
Confidence            999999998 678889999999999999999985 666544332 3567777776654200   0     0000011111


Q ss_pred             CcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc-ccCccccccccccccccccCCceEE
Q psy3787         171 STSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD-RTKTLTLCKVINIPESVYMNRPFAL  247 (263)
Q Consensus       171 ~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~-~ip~~~~~~~~~l~~~~~~~~~~~~  247 (263)
                      ..+..+..+..+++|+.|+++  .++..++.+..    +++|+. |++++|+++ .+|. .+..+.++..+.+.+|+...
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----l~~L~~-L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~  282 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL----SKNLNG-LDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCC----CTTCCE-EECCSSCCEECCCG-GGGGCTTCCEEECCSSEEEE
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCcccc----cCCCCE-EECcCCcccCcCCh-HHhcCcCCCEEECcCCcccc
Confidence            123455667788888888888  66544444332    346998 999999998 4543 45566777888888887654


Q ss_pred             ec
Q psy3787         248 TY  249 (263)
Q Consensus       248 ~~  249 (263)
                      .+
T Consensus       283 ~i  284 (313)
T 1ogq_A          283 EI  284 (313)
T ss_dssp             EC
T ss_pred             cC
Confidence            43

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=2.7e-22  Score=166.26  Aligned_cols=199  Identities=22%  Similarity=0.235  Sum_probs=106.1

Q ss_pred             CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCC-CCCCchhhhhCCCCccEEEe
Q psy3787           4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK-INNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l   80 (263)
                      ++++|++++|.++......+..+++|++|++++|.++.++  .+..+++|++|++++|. +..+.+..+..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            4566666666655521112556666666666666655442  35555666666666664 55555555555666666666


Q ss_pred             ecCcCccc-cccccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccc
Q psy3787          81 KNNKISEV-SSNVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC  158 (263)
Q Consensus        81 ~~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~  158 (263)
                      ++|+++.+ |..+..+++|++|++++|.++.++.. ++.+++|+.|++++|.+++++...+.. ...++.++++.+.+  
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l--  189 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRV--  189 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCC--
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC-ccccCEEECCCCcc--
Confidence            66666544 33455566666666666666655432 555666666666666666555433222 12344455544442  


Q ss_pred             cccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787         159 QNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD  222 (263)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~  222 (263)
                                   .+..+..+..+++|++|+++  .++.++...+...   ++|+. |++++|++.
T Consensus       190 -------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~-L~l~~N~~~  238 (285)
T 1ozn_A          190 -------------AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL---RALQY-LRLNDNPWV  238 (285)
T ss_dssp             -------------CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC---TTCCE-EECCSSCEE
T ss_pred             -------------cccCHhHccCcccccEeeCCCCcCCcCCHHHcccC---cccCE-EeccCCCcc
Confidence                         22224445555666666666  5555554433222   24665 666666544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=3.6e-22  Score=165.49  Aligned_cols=219  Identities=20%  Similarity=0.253  Sum_probs=180.9

Q ss_pred             CEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC
Q psy3787           6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN   83 (263)
Q Consensus         6 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~   83 (263)
                      +.++.+++.++.  +|. .-.++++.|++++|.++.++  .+..+++|++|++++|.++++.+..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~--ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA--VPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS--CCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc--CCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            578888888877  554 23579999999999999776  4889999999999999999988888999999999999999


Q ss_pred             c-Cccc-cccccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccc
Q psy3787          84 K-ISEV-SSNVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQN  160 (263)
Q Consensus        84 ~-l~~l-p~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  160 (263)
                      . ++.+ |..+..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.++...+.. ...++.++++.+.     
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~-----  164 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-LGNLTHLFLHGNR-----  164 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSC-----
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-CCCccEEECCCCc-----
Confidence            7 8877 66788999999999999999987 556899999999999999999988764433 2467778887776     


Q ss_pred             cCCCCCCCcCCcccccc-cccccCCcceeccc--ccccc-ChhHHhhcCCccceeEEEeccCCcccccCccccccccccc
Q psy3787         161 VDGGGMSSQESTSEINI-DKYKLDRTKTLTLC--KVINI-PESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIP  236 (263)
Q Consensus       161 ~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~--~~~~l-~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~  236 (263)
                                 ...++. .+..+++|++|+++  .++.+ |..+..+    ++|+. |++++|+++.+|...+..+.++.
T Consensus       165 -----------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l----~~L~~-L~l~~n~l~~~~~~~~~~l~~L~  228 (285)
T 1ozn_A          165 -----------ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL----GRLMT-LYLFANNLSALPTEALAPLRALQ  228 (285)
T ss_dssp             -----------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC----TTCCE-EECCSSCCSCCCHHHHTTCTTCC
T ss_pred             -----------ccccCHHHhcCccccCEEECCCCcccccCHhHccCc----ccccE-eeCCCCcCCcCCHHHcccCcccC
Confidence                       334444 47889999999999  77766 4444433    36999 99999999999987777778889


Q ss_pred             cccccCCceEEec
Q psy3787         237 ESVYMNRPFALTY  249 (263)
Q Consensus       237 ~~~~~~~~~~~~~  249 (263)
                      .+.+.+||..+..
T Consensus       229 ~L~l~~N~~~c~~  241 (285)
T 1ozn_A          229 YLRLNDNPWVCDC  241 (285)
T ss_dssp             EEECCSSCEECSG
T ss_pred             EEeccCCCccCCC
Confidence            9999999987644

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.88  E-value=2.1e-22  Score=177.34  Aligned_cols=70  Identities=11%  Similarity=0.125  Sum_probs=54.0

Q ss_pred             ccccccccCCcceeccc--cccccCh-hHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEEec
Q psy3787         175 INIDKYKLDRTKTLTLC--KVINIPE-SVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALTY  249 (263)
Q Consensus       175 ~~~~~~~~~~L~~L~l~--~~~~l~~-~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~~  249 (263)
                      .+..+..+++|++|+++  .++.+++ .+..+    ++|+. |++++|+++.+|...+..+.++..+.+.+||..+..
T Consensus       339 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGL----PNLKE-LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             CGGGGTTCTTCCEEECCSSCCCEECTTTTTTC----TTCCE-EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             ChhHhcCcccCCEEECCCCcccccChhhcccc----ccccE-EECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence            35567888999999999  7776644 34333    36998 999999999998877777788888999999876654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.8e-21  Score=160.22  Aligned_cols=194  Identities=24%  Similarity=0.356  Sum_probs=146.2

Q ss_pred             CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      +.+.+++++++++.  +|. +.  ++++.|++++|.++.++  .+..+++|++|++++|.++.+++..|..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA--IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSS--CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCc--cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            46788899888887  665 33  67899999999998776  4888899999999999999888887888999999999


Q ss_pred             ecCcCccccc-cccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccc
Q psy3787          81 KNNKISEVSS-NVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC  158 (263)
Q Consensus        81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~  158 (263)
                      ++|+++.+|. .+..+++|++|++++|.++.++. .++.+++|+.|++++|.+++++...+... ..++.++++.+.+  
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l--  169 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL-TSLKELRLYNNQL--  169 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCC--
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC-cccceeEecCCcC--
Confidence            9999988765 45788899999999999988754 47889999999999999888876543322 3556666655552  


Q ss_pred             cccCCCCCCCcCCcccccc-cccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787         159 QNVDGGGMSSQESTSEINI-DKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD  222 (263)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~  222 (263)
                                    ..+++ .+..+++|++|+++  .++.+|...+...   ++|+. |++++|++.
T Consensus       170 --------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~-L~l~~N~~~  218 (270)
T 2o6q_A          170 --------------KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL---EKLKM-LQLQENPWD  218 (270)
T ss_dssp             --------------SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC---TTCCE-EECCSSCBC
T ss_pred             --------------cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccc---cCCCE-EEecCCCee
Confidence                          22332 35667778888887  6777776544332   35777 888887654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=2.3e-22  Score=173.87  Aligned_cols=133  Identities=23%  Similarity=0.356  Sum_probs=103.0

Q ss_pred             CCCCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccE
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSL   77 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~   77 (263)
                      +++++.++++++.++.  +|.  +..+++|++|++++|.+..++  .+..+++|++|++++|.+..+++..+..+++|++
T Consensus        44 l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            4677888888888777  555  677888888888888887654  4777888888888888888877777778888888


Q ss_pred             EEeecCcCcccccc-ccCCCCcCEEEccCCcCCCcc-ccccCCCcccEEEecCCCCCCcch
Q psy3787          78 LNLKNNKISEVSSN-VGDLINLAILDLSDNELTDVP-CELSSLFHLKSLFLGGNPIKTVRN  136 (263)
Q Consensus        78 L~l~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~  136 (263)
                      |++++|+++.+|.. +..+++|++|++++|.+..++ ..++.+++|+.|++++|.++.++.
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  182 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL  182 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc
Confidence            88888888877765 477888888888888887664 347778888888888888777653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=1.4e-22  Score=169.52  Aligned_cols=222  Identities=23%  Similarity=0.273  Sum_probs=141.5

Q ss_pred             CCCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCC----cCCCCCCCCcEEEecCCCCCCCchhhhhCCCCcc
Q psy3787           3 SHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTML----PVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLS   76 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~   76 (263)
                      +++++|++++|+++.  ++.  +.++++|++|++++|.++.+    ..+..+++|++|++++|.+..++.. +..+++|+
T Consensus        28 ~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~  104 (306)
T 2z66_A           28 SSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE  104 (306)
T ss_dssp             TTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCC
T ss_pred             CCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCC
Confidence            356667777776665  433  56677777777777766643    1234456677777777766655443 55666777


Q ss_pred             EEEeecCcCccccc--cccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCC--cchHHHHhHHHHhhhhhC
Q psy3787          77 LLNLKNNKISEVSS--NVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKT--VRNDILQDSKRIISHIKT  151 (263)
Q Consensus        77 ~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~l~~l~~  151 (263)
                      +|++++|+++.++.  .+..+++|++|++++|.+... +..+..+++|+.|++++|.+.+  +|.....  ...++.+++
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--l~~L~~L~L  182 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--LRNLTFLDL  182 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--CTTCCEEEC
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh--CcCCCEEEC
Confidence            77777776665543  456666777777777766643 4446666677777777776654  2322111  234555555


Q ss_pred             CCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccc
Q psy3787         152 SRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTL  229 (263)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~  229 (263)
                      +.+.+               .+..+..+..+++|++|+++  .++.++...+..   +++|+. |++++|+++.+++...
T Consensus       183 s~n~l---------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---l~~L~~-L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          183 SQCQL---------------EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC---LNSLQV-LDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             TTSCC---------------CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT---CTTCCE-EECTTSCCCBCSSSSC
T ss_pred             CCCCc---------------CCcCHHHhcCCCCCCEEECCCCccCccChhhccC---cccCCE-eECCCCCCcccCHHHH
Confidence            55542               22335567888999999999  777776644433   336998 9999999987766665


Q ss_pred             ccc-cccccccccCCceEEe
Q psy3787         230 CKV-INIPESVYMNRPFALT  248 (263)
Q Consensus       230 ~~~-~~l~~~~~~~~~~~~~  248 (263)
                      ..+ .++..+.+.+||..+.
T Consensus       244 ~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCCCTTCCEEECTTCCEECS
T ss_pred             HhhhccCCEEEccCCCeecc
Confidence            555 3677888899987654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.88  E-value=1.1e-22  Score=171.19  Aligned_cols=215  Identities=23%  Similarity=0.147  Sum_probs=170.9

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +++|++|++++|.+.......+.++++|++|++++|.++.++.+..+++|++|++++|.++++++     .++|++|+++
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~  107 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA  107 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC-----CCCcCEEECC
Confidence            35799999999999883223499999999999999999877678899999999999999887653     4789999999


Q ss_pred             cCcCccccccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccc
Q psy3787          82 NNKISEVSSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQN  160 (263)
Q Consensus        82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  160 (263)
                      +|+++.++..  .+++|++|++++|.++.++. .++.+++|+.|++++|.+++++...+......++.++++.+.+    
T Consensus       108 ~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l----  181 (317)
T 3o53_A          108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI----  181 (317)
T ss_dssp             SSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC----
T ss_pred             CCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC----
Confidence            9999977654  36789999999999998754 6888999999999999999976554433335677888877763    


Q ss_pred             cCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccc
Q psy3787         161 VDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPES  238 (263)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~  238 (263)
                                  ..++ ....+++|++|+++  .++.+|+.+....    +|+. |++++|+++.+|.. ...+.++..+
T Consensus       182 ------------~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~----~L~~-L~L~~N~l~~l~~~-~~~l~~L~~L  242 (317)
T 3o53_A          182 ------------YDVK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAA----GVTW-ISLRNNKLVLIEKA-LRFSQNLEHF  242 (317)
T ss_dssp             ------------CEEE-CCCCCTTCCEEECCSSCCCEECGGGGGGT----TCSE-EECTTSCCCEECTT-CCCCTTCCEE
T ss_pred             ------------cccc-cccccccCCEEECCCCcCCcchhhhcccC----cccE-EECcCCcccchhhH-hhcCCCCCEE
Confidence                        3332 23357899999999  8888888765544    5998 99999999988864 3456777888


Q ss_pred             cccCCceE
Q psy3787         239 VYMNRPFA  246 (263)
Q Consensus       239 ~~~~~~~~  246 (263)
                      .+.+|+..
T Consensus       243 ~l~~N~~~  250 (317)
T 3o53_A          243 DLRGNGFH  250 (317)
T ss_dssp             ECTTCCCB
T ss_pred             EccCCCcc
Confidence            88888865

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=1.1e-21  Score=163.26  Aligned_cols=193  Identities=24%  Similarity=0.306  Sum_probs=149.5

Q ss_pred             CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL   78 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L   78 (263)
                      ++++++++++++.++.  +|. +.  +.++.|++++|.++.++  .+..+++|++|++++|.++.+++.  ..+++|++|
T Consensus         9 l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             STTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             cCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            5778889999988887  655 32  68889999999988664  478888999999999988877653  678889999


Q ss_pred             EeecCcCccccccccCCCCcCEEEccCCcCCCcc-ccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccc
Q psy3787          79 NLKNNKISEVSSNVGDLINLAILDLSDNELTDVP-CELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYH  157 (263)
Q Consensus        79 ~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~  157 (263)
                      ++++|+++.+|..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.+++++...+... ..++.|+++.+.  
T Consensus        83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~--  159 (290)
T 1p9a_G           83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT-PKLEKLSLANNN--  159 (290)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSC--
T ss_pred             ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc-cCCCEEECCCCc--
Confidence            9999999988888888889999999999988876 458888899999999999888877654432 456667776666  


Q ss_pred             ccccCCCCCCCcCCccccccc-ccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787         158 CQNVDGGGMSSQESTSEINID-KYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD  222 (263)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~  222 (263)
                                    ...++.. +..+++|+.|+++  .++.+|..++....    |+. +++++|.+.
T Consensus       160 --------------l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~----L~~-l~L~~Np~~  208 (290)
T 1p9a_G          160 --------------LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL----LPF-AFLHGNPWL  208 (290)
T ss_dssp             --------------CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCC----CSE-EECCSCCBC
T ss_pred             --------------CCccCHHHhcCcCCCCEEECCCCcCCccChhhccccc----CCe-EEeCCCCcc
Confidence                          3344433 4667888888888  77788877776654    887 888888543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=1.9e-21  Score=164.41  Aligned_cols=230  Identities=22%  Similarity=0.264  Sum_probs=165.3

Q ss_pred             CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      +++.++++++.+..  +|. +  .+.++.|++++|.++.++  .+..+++|++|++++|.+.++.+..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~~--lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLEK--VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCCS--CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCccc--cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            57889999998887  665 3  378999999999999876  4889999999999999999998888999999999999


Q ss_pred             ecCcCccccccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCC--cchHHHHhHHHHhhhhhCCCCccc
Q psy3787          81 KNNKISEVSSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKT--VRNDILQDSKRIISHIKTSRLDYH  157 (263)
Q Consensus        81 ~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~l~~l~~~~~~~~  157 (263)
                      ++|.++.+|..+.  ++|++|++++|.++.++. .+..+++|+.+++++|.+..  +....+.. ...++.++++.+.+.
T Consensus       108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-MKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG-CTTCCEEECCSSCCC
T ss_pred             CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccC-CCCcCEEECCCCccc
Confidence            9999999887764  678999999988887754 47888888888888888764  33222221 234555555544431


Q ss_pred             cc------ccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccc
Q psy3787         158 CQ------NVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTL  229 (263)
Q Consensus       158 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~  229 (263)
                      .-      .+..-..+........+..+..+++|++|+++  .++.++...+..   +++|+. |++++|+++.+|.. .
T Consensus       185 ~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~L~~-L~L~~N~l~~lp~~-l  259 (330)
T 1xku_A          185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN---TPHLRE-LHLNNNKLVKVPGG-L  259 (330)
T ss_dssp             SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG---STTCCE-EECCSSCCSSCCTT-T
T ss_pred             cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC---CCCCCE-EECCCCcCccCChh-h
Confidence            00      00000000001122335568888999999999  777776643333   236999 99999999988874 3


Q ss_pred             ccccccccccccCCce
Q psy3787         230 CKVINIPESVYMNRPF  245 (263)
Q Consensus       230 ~~~~~l~~~~~~~~~~  245 (263)
                      ..+.++..+.+.+|+.
T Consensus       260 ~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             TTCSSCCEEECCSSCC
T ss_pred             ccCCCcCEEECCCCcC
Confidence            3456666677777763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=1.1e-21  Score=172.38  Aligned_cols=201  Identities=23%  Similarity=0.302  Sum_probs=169.2

Q ss_pred             CCCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787           1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL   78 (263)
Q Consensus         1 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L   78 (263)
                      .+++|++|++++|.+.......|.++++|++|++++|.++.++.  +..+++|++|++++|.+..+++..|..+++|++|
T Consensus        86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  165 (440)
T 3zyj_A           86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL  165 (440)
T ss_dssp             SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence            36789999999999988433449999999999999999998873  8899999999999999999998889999999999


Q ss_pred             EeecC-cCccccc-cccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcc
Q psy3787          79 NLKNN-KISEVSS-NVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY  156 (263)
Q Consensus        79 ~l~~~-~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~  156 (263)
                      ++++| .++.++. .+..+++|++|++++|.++.+| .+..+++|+.|++++|.++++++..+... ..|+.++++.+.+
T Consensus       166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l  243 (440)
T 3zyj_A          166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQI  243 (440)
T ss_dssp             ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCC
T ss_pred             CCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccC-ccCCEEECCCCce
Confidence            99994 6677765 5789999999999999999998 58899999999999999999866554432 4677777777663


Q ss_pred             cccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787         157 HCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD  222 (263)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~  222 (263)
                                     ....+..+..+++|++|+++  +++.+|...+...   ++|+. |++++|.+.
T Consensus       244 ---------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~-L~L~~Np~~  292 (440)
T 3zyj_A          244 ---------------QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL---HHLER-IHLHHNPWN  292 (440)
T ss_dssp             ---------------CEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC---TTCCE-EECCSSCEE
T ss_pred             ---------------eEEChhhhcCCCCCCEEECCCCCCCccChhHhccc---cCCCE-EEcCCCCcc
Confidence                           33344567889999999999  8899988766543   37999 999999653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.87  E-value=9.5e-23  Score=186.89  Aligned_cols=153  Identities=20%  Similarity=0.349  Sum_probs=126.6

Q ss_pred             CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCC-CCC--CcC-CCC------CCCCcEEEecCCCCCCCch-hhh
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQ-LTM--LPV-CTD------CKNLTHLLLGFNKINNMEN-DYF   69 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~--l~~-~~~------~~~L~~L~l~~n~~~~~~~-~~~   69 (263)
                      +++|++|++++|.+.+ .+|. +.++++|++|++++|. ++.  +|. +..      +++|++|++++|.++.++. ..+
T Consensus       248 l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l  326 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL  326 (636)
T ss_dssp             CTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred             cCCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence            6789999999999887 3555 9999999999999998 874  662 444      4899999999999997665 268


Q ss_pred             hCCCCccEEEeecCcCc-cccccccCCCCcCEEEccCCcCCCccccccCCCc-ccEEEecCCCCCCcchHHHHhHHHHhh
Q psy3787          70 LTLTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELTDVPCELSSLFH-LKSLFLGGNPIKTVRNDILQDSKRIIS  147 (263)
Q Consensus        70 ~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~~l~  147 (263)
                      ..+++|++|++++|+++ .+| .+..+++|++|++++|.++.+|..++.+++ |+.|++++|.++.+|..........++
T Consensus       327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~  405 (636)
T 4eco_A          327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS  405 (636)
T ss_dssp             TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEE
T ss_pred             ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccC
Confidence            89999999999999999 899 888889999999999999988888999998 999999999999888643332223567


Q ss_pred             hhhCCCCcc
Q psy3787         148 HIKTSRLDY  156 (263)
Q Consensus       148 ~l~~~~~~~  156 (263)
                      .++++.+.+
T Consensus       406 ~L~Ls~N~l  414 (636)
T 4eco_A          406 AIDFSYNEI  414 (636)
T ss_dssp             EEECCSSCT
T ss_pred             EEECcCCcC
Confidence            777766664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=3.7e-22  Score=177.49  Aligned_cols=214  Identities=23%  Similarity=0.153  Sum_probs=170.8

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN   82 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~   82 (263)
                      ++|+.|++++|.+.......+.++++|++|++++|.++..+.+..+++|++|++++|.++++++     .++|++|++++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~  108 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAAN  108 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCS
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcC
Confidence            4799999999999983333499999999999999999876668999999999999999887654     37899999999


Q ss_pred             CcCccccccccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccccc
Q psy3787          83 NKISEVSSNVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV  161 (263)
Q Consensus        83 ~~l~~lp~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  161 (263)
                      |.++.++..  .+++|+.|++++|.++.+ |..++.+++|+.|++++|.++++++..+......+..|+++.+.+     
T Consensus       109 N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l-----  181 (487)
T 3oja_A          109 NNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-----  181 (487)
T ss_dssp             SCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-----
T ss_pred             CcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc-----
Confidence            999977654  467899999999999976 556889999999999999999965544432235677888877773     


Q ss_pred             CCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccccccccccc
Q psy3787         162 DGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESV  239 (263)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~  239 (263)
                                 ..++ ....+++|+.|+++  .++.+|+.+..+.    +|+. |++++|.++.+|.. ...+.++..+.
T Consensus       182 -----------~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~----~L~~-L~Ls~N~l~~lp~~-l~~l~~L~~L~  243 (487)
T 3oja_A          182 -----------YDVK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAA----GVTW-ISLRNNKLVLIEKA-LRFSQNLEHFD  243 (487)
T ss_dssp             -----------CEEE-CCCCCTTCCEEECCSSCCCEECGGGGGGT----TCSE-EECTTSCCCEECTT-CCCCTTCCEEE
T ss_pred             -----------cccc-ccccCCCCCEEECCCCCCCCCCHhHcCCC----CccE-EEecCCcCcccchh-hccCCCCCEEE
Confidence                       3333 24458899999999  8888888766554    4998 99999999988874 33456677788


Q ss_pred             ccCCceE
Q psy3787         240 YMNRPFA  246 (263)
Q Consensus       240 ~~~~~~~  246 (263)
                      +.+|+..
T Consensus       244 l~~N~l~  250 (487)
T 3oja_A          244 LRGNGFH  250 (487)
T ss_dssp             CTTCCBC
T ss_pred             cCCCCCc
Confidence            8888865

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=1.1e-21  Score=166.01  Aligned_cols=229  Identities=20%  Similarity=0.255  Sum_probs=173.9

Q ss_pred             CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      +++.++++++.+..  +|. +  .++++.|++++|.+..++  .+..+++|++|++++|.++.+.+..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~~--ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA--VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCSS--CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccc--cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            58899999999887  665 4  379999999999999765  4899999999999999999998888999999999999


Q ss_pred             ecCcCccccccccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCC--cchHHHHhHHHHhhhhhCCCCccc
Q psy3787          81 KNNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKT--VRNDILQDSKRIISHIKTSRLDYH  157 (263)
Q Consensus        81 ~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~l~~l~~~~~~~~  157 (263)
                      ++|+++.+|..+.  ++|++|++++|.++.++.. ++.+++|+.|++++|.++.  +....+...  .++.++++.+.+.
T Consensus       110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCS
T ss_pred             CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCC
Confidence            9999999988765  7899999999999988754 8999999999999999874  333332222  4566666555431


Q ss_pred             c------cccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccc
Q psy3787         158 C------QNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTL  229 (263)
Q Consensus       158 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~  229 (263)
                      .      ..+..-..+........+..+..+++|+.|+++  .++.++...+...   ++|+. |++++|+++.+|.. .
T Consensus       186 ~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~-L~L~~N~l~~lp~~-l  260 (332)
T 2ft3_A          186 GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL---PTLRE-LHLDNNKLSRVPAG-L  260 (332)
T ss_dssp             SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC---TTCCE-EECCSSCCCBCCTT-G
T ss_pred             ccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC---CCCCE-EECCCCcCeecChh-h
Confidence            1      011111111111122334568889999999999  7887776444332   36999 99999999999875 4


Q ss_pred             ccccccccccccCCce
Q psy3787         230 CKVINIPESVYMNRPF  245 (263)
Q Consensus       230 ~~~~~l~~~~~~~~~~  245 (263)
                      ..+.++..+.+.+|+.
T Consensus       261 ~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          261 PDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             GGCTTCCEEECCSSCC
T ss_pred             hcCccCCEEECCCCCC
Confidence            4566777777777764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.9e-21  Score=163.05  Aligned_cols=196  Identities=19%  Similarity=0.269  Sum_probs=163.9

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +++|++|++++|.+..  ++.+..+++|++|++++|.+..++.+..+++|++|++++|.+..++  .+..+++|++|+++
T Consensus        40 l~~L~~L~l~~~~i~~--l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT  115 (308)
T ss_dssp             HHTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred             cCCcCEEEeeCCCccC--chhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECC
Confidence            4579999999999887  6789999999999999999998888899999999999999999875  48889999999999


Q ss_pred             cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccccc
Q psy3787          82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV  161 (263)
Q Consensus        82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  161 (263)
                      +|+++.++. +..+++|++|++++|.++.++. ++.+++|+.|++++|.++.++. ...  ...++.++++.+.+     
T Consensus       116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~--l~~L~~L~l~~n~l-----  185 (308)
T 1h6u_A          116 STQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LAN--LSKLTTLKADDNKI-----  185 (308)
T ss_dssp             TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTT--CTTCCEEECCSSCC-----
T ss_pred             CCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcC--CCCCCEEECCCCcc-----
Confidence            999998876 7899999999999999998875 8899999999999999999876 211  34677777777663     


Q ss_pred             CCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccc
Q psy3787         162 DGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTL  229 (263)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~  229 (263)
                                 ..++. +..+++|++|+++  .++.+++ +..    +++|+. |++++|+++..|....
T Consensus       186 -----------~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~----l~~L~~-L~l~~N~i~~~~~~~~  237 (308)
T 1h6u_A          186 -----------SDISP-LASLPNLIEVHLKNNQISDVSP-LAN----TSNLFI-VTLTNQTITNQPVFYN  237 (308)
T ss_dssp             -----------CCCGG-GGGCTTCCEEECTTSCCCBCGG-GTT----CTTCCE-EEEEEEEEECCCEECC
T ss_pred             -----------CcChh-hcCCCCCCEEEccCCccCcccc-ccC----CCCCCE-EEccCCeeecCCeeec
Confidence                       33333 7889999999999  7887773 333    446999 9999999988776443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.87  E-value=1.9e-21  Score=171.41  Aligned_cols=201  Identities=22%  Similarity=0.284  Sum_probs=169.2

Q ss_pred             CCCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787           1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL   78 (263)
Q Consensus         1 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L   78 (263)
                      .+++|+.|++++|.+.......|.++++|++|++++|.++.++.  +..+++|++|++++|.+..+++..|..+++|+.|
T Consensus        97 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  176 (452)
T 3zyi_A           97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL  176 (452)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence            36889999999999988333349999999999999999998773  8889999999999999999998889999999999


Q ss_pred             Eeec-CcCccccc-cccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcc
Q psy3787          79 NLKN-NKISEVSS-NVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY  156 (263)
Q Consensus        79 ~l~~-~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~  156 (263)
                      ++++ +.++.++. .+..+.+|++|++++|.++.+| .+..+++|+.|++++|.++++++..+... ..|+.++++.+.+
T Consensus       177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l  254 (452)
T 3zyi_A          177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQV  254 (452)
T ss_dssp             ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTC-TTCCEEECTTSCC
T ss_pred             eCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCc-cCCCEEEeCCCcC
Confidence            9999 57777765 5789999999999999999987 58899999999999999999876655443 4677788777763


Q ss_pred             cccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787         157 HCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD  222 (263)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~  222 (263)
                                     ....+..+..+++|++|+++  .++.+|...+...   ++|+. |++++|.+.
T Consensus       255 ---------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~-L~L~~Np~~  303 (452)
T 3zyi_A          255 ---------------SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL---RYLVE-LHLHHNPWN  303 (452)
T ss_dssp             ---------------CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC---TTCCE-EECCSSCEE
T ss_pred             ---------------ceECHHHhcCCCCCCEEECCCCcCCccChHHhccc---cCCCE-EEccCCCcC
Confidence                           33345568889999999999  8889988766543   37999 999999654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=1e-21  Score=172.86  Aligned_cols=135  Identities=23%  Similarity=0.336  Sum_probs=107.0

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCC-CCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      +++++|++++|.+.......+.++++|++|++++|.+. .++  .+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            56889999999888732333888999999999999876 343  478888999999999998888777788888999999


Q ss_pred             eecCcCcc-cccc--ccCCCCcCEEEccCCcCCCc-ccc-ccCCCcccEEEecCCCCCCcchH
Q psy3787          80 LKNNKISE-VSSN--VGDLINLAILDLSDNELTDV-PCE-LSSLFHLKSLFLGGNPIKTVRND  137 (263)
Q Consensus        80 l~~~~l~~-lp~~--~~~l~~L~~L~l~~n~l~~l-~~~-~~~l~~L~~L~l~~n~l~~~~~~  137 (263)
                      +++|+++. ++..  +..+++|++|++++|.++.+ |.. ++.+++|+.|++++|.++++++.
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  172 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE  172 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh
Confidence            99998884 3433  77888899999999888876 544 78888888888888888775443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.86  E-value=5.7e-21  Score=172.71  Aligned_cols=147  Identities=17%  Similarity=0.170  Sum_probs=93.6

Q ss_pred             CCCCcCEEEccCCcCCC-ccccccCCCcccEEEecCCCCCCcchHHHHhH-HHHhhhhhCCCCcccccccCCCCCCC---
Q psy3787          94 DLINLAILDLSDNELTD-VPCELSSLFHLKSLFLGGNPIKTVRNDILQDS-KRIISHIKTSRLDYHCQNVDGGGMSS---  168 (263)
Q Consensus        94 ~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~---  168 (263)
                      .+++|++|++++|.++. +|..++.+++|+.|++++|.+++++....... ...++.++++.+.+.-. +....+..   
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~l~~  429 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH-AYDRTCAWAES  429 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC-CSSCCCCCCTT
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc-cChhhhcCccc
Confidence            44566666666666664 45566777777777777777776653221111 34566666665553110 00000000   


Q ss_pred             --------cCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccc
Q psy3787         169 --------QESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPES  238 (263)
Q Consensus       169 --------~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~  238 (263)
                              ....+..+..+.  ++|++|+++  +++.+|.+++.+.    +|+. |++++|+++.+|...+..+.++..+
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~----~L~~-L~L~~N~l~~l~~~~~~~l~~L~~L  502 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQ----ALQE-LNVASNQLKSVPDGVFDRLTSLQYI  502 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSC----CCSE-EECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCC----CCCE-EECCCCCCCCCCHHHHhcCCCCCEE
Confidence                    000122222222  689999999  8889998887544    5999 9999999999998766677888899


Q ss_pred             cccCCceEEe
Q psy3787         239 VYMNRPFALT  248 (263)
Q Consensus       239 ~~~~~~~~~~  248 (263)
                      .+.+||+.+.
T Consensus       503 ~l~~N~~~c~  512 (562)
T 3a79_B          503 WLHDNPWDCT  512 (562)
T ss_dssp             ECCSCCBCCC
T ss_pred             EecCCCcCCC
Confidence            9999997764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=2.7e-21  Score=160.82  Aligned_cols=201  Identities=19%  Similarity=0.195  Sum_probs=167.0

Q ss_pred             cCCCCCCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEE
Q psy3787          23 FIDMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAIL  101 (263)
Q Consensus        23 ~~~l~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L  101 (263)
                      +.++++++.++++++.++.+|. +  .+.++.|++++|.+..+.+..+..+++|++|++++|.++.++.. ..+++|++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L   82 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL   82 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence            6788999999999999998884 3  36899999999999998888899999999999999999988765 788999999


Q ss_pred             EccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccc-ccc
Q psy3787         102 DLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINI-DKY  180 (263)
Q Consensus       102 ~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  180 (263)
                      ++++|.++.+|..+..+++|+.|++++|.++++++..+... ..++.|+++.+.+                ..++. .+.
T Consensus        83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l-~~L~~L~L~~N~l----------------~~~~~~~~~  145 (290)
T 1p9a_G           83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNEL----------------KTLPPGLLT  145 (290)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC-TTCCEEECTTSCC----------------CCCCTTTTT
T ss_pred             ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCC-CCCCEEECCCCCC----------------CccChhhcc
Confidence            99999999999889999999999999999999886655442 4677788877773                33333 357


Q ss_pred             ccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEEe
Q psy3787         181 KLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALT  248 (263)
Q Consensus       181 ~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~  248 (263)
                      .+++|+.|+++  +++.+|...+....   +|+. |++++|+++.+|...+ +...+..+.+.+||+.+.
T Consensus       146 ~l~~L~~L~L~~N~l~~l~~~~~~~l~---~L~~-L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          146 PTPKLEKLSLANNNLTELPAGLLNGLE---NLDT-LLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             TCTTCCEEECTTSCCSCCCTTTTTTCT---TCCE-EECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCCS
T ss_pred             cccCCCEEECCCCcCCccCHHHhcCcC---CCCE-EECCCCcCCccChhhc-ccccCCeEEeCCCCccCc
Confidence            88999999999  88999987765433   7999 9999999999988654 345677888999998764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.86  E-value=2.4e-22  Score=168.81  Aligned_cols=216  Identities=18%  Similarity=0.222  Sum_probs=165.0

Q ss_pred             CCEEEeecCccCCCCccc-cC-------CCCCCcEEEecCCCCC-CCcC-C--CCCCCCcEEEecCCCCCCCchhhhhCC
Q psy3787           5 LKTLDLSHNKLVSDSLPL-FI-------DMRSLTELNLSYNQLT-MLPV-C--TDCKNLTHLLLGFNKINNMENDYFLTL   72 (263)
Q Consensus         5 L~~L~l~~n~~~~~~~~~-~~-------~l~~L~~L~l~~n~l~-~l~~-~--~~~~~L~~L~l~~n~~~~~~~~~~~~l   72 (263)
                      ++.|++++|.+....++. +.       ++++|++|++++|.++ .+|. +  ..+++|++|++++|.+.+. +..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            456677777775434444 33       6899999999999998 4553 3  7889999999999999988 4556666


Q ss_pred             -----CCccEEEeecCcCcccc-ccccCCCCcCEEEccCCcCCC---ccccc--cCCCcccEEEecCCCCCCcchHHHHh
Q psy3787          73 -----TKLSLLNLKNNKISEVS-SNVGDLINLAILDLSDNELTD---VPCEL--SSLFHLKSLFLGGNPIKTVRNDILQD  141 (263)
Q Consensus        73 -----~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~n~l~~---l~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~  141 (263)
                           ++|++|++++|+++.++ ..++.+++|++|++++|.+.+   ++..+  +.+++|+.|++++|.+++++......
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  223 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL  223 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence                 89999999999999776 678899999999999998763   34444  88999999999999998655432221


Q ss_pred             H--HHHhhhhhCCCCcccccccCCCCCCCcCCccccc-ccccccCCcceeccc--cccccChhHHhhcCCccceeEEEec
Q psy3787         142 S--KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEIN-IDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINI  216 (263)
Q Consensus       142 ~--~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~l  216 (263)
                      .  ...++.++++.+.+               .+..+ ..+..+++|++|+++  .++.+|..++  .    +|+. |++
T Consensus       224 ~~~l~~L~~L~Ls~N~l---------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~----~L~~-L~L  281 (312)
T 1wwl_A          224 AAARVQLQGLDLSHNSL---------------RDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--A----KLSV-LDL  281 (312)
T ss_dssp             HHTTCCCSEEECTTSCC---------------CSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--S----EEEE-EEC
T ss_pred             HhcCCCCCEEECCCCcC---------------CcccchhhhhhcCCCCEEECCCCccChhhhhcc--C----CceE-EEC
Confidence            1  24677788877763               22222 345668999999999  8889998766  3    5999 999


Q ss_pred             cCCcccccCccccccccccccccccCCce
Q psy3787         217 DKYKLDRTKTLTLCKVINIPESVYMNRPF  245 (263)
Q Consensus       217 s~n~l~~ip~~~~~~~~~l~~~~~~~~~~  245 (263)
                      ++|+|+.+|.  ...+.++..+.+.+|+.
T Consensus       282 s~N~l~~~p~--~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          282 SYNRLDRNPS--PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             CSSCCCSCCC--TTTSCEEEEEECTTCTT
T ss_pred             CCCCCCCChh--HhhCCCCCEEeccCCCC
Confidence            9999998876  44567788888888874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=9.4e-22  Score=179.09  Aligned_cols=134  Identities=22%  Similarity=0.355  Sum_probs=121.2

Q ss_pred             CCCCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccE
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSL   77 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~   77 (263)
                      +.+++.+++++|.+..  +|+  +.++++|++|++++|.+..++  .+..+++|++|++++|.+.++++..|..+++|++
T Consensus        50 l~~l~~l~l~~~~l~~--lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCCC--cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            4678999999999988  666  888999999999999999765  5899999999999999999999988999999999


Q ss_pred             EEeecCcCcccccc-ccCCCCcCEEEccCCcCCCcc-ccccCCCcccEEEecCCCCCCcchH
Q psy3787          78 LNLKNNKISEVSSN-VGDLINLAILDLSDNELTDVP-CELSSLFHLKSLFLGGNPIKTVRND  137 (263)
Q Consensus        78 L~l~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~  137 (263)
                      |++++|.++.+|.. ++.+++|++|++++|.++.++ ..++.+++|+.|++++|.+++++..
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  189 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS  189 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh
Confidence            99999999999876 589999999999999999775 4699999999999999999987644

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2.1e-21  Score=156.85  Aligned_cols=192  Identities=14%  Similarity=0.233  Sum_probs=116.1

Q ss_pred             CCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCC-CCCCchhhhhCCCCccEEEeec-CcCccccc-cccCCCCcCEEE
Q psy3787          28 SLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK-INNMENDYFLTLTKLSLLNLKN-NKISEVSS-NVGDLINLAILD  102 (263)
Q Consensus        28 ~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-~~l~~lp~-~~~~l~~L~~L~  102 (263)
                      +++.|++++|.++.++  .+..+++|++|++++|. ++.+++..|..+++|++|++++ |+++.++. .+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            5666666666666554  25566666666666664 6666555566666666666666 66665543 355666666666


Q ss_pred             ccCCcCCCccccccCCCccc---EEEecCC-CCCCcchHHHHhHHHHhh-hhhCCCCcccccccCCCCCCCcCCcccccc
Q psy3787         103 LSDNELTDVPCELSSLFHLK---SLFLGGN-PIKTVRNDILQDSKRIIS-HIKTSRLDYHCQNVDGGGMSSQESTSEINI  177 (263)
Q Consensus       103 l~~n~l~~l~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (263)
                      +++|.++.+|. ++.+++|+   .+++++| .++.++...+... ..++ .++++.+.                ...++.
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l-~~L~~~L~l~~n~----------------l~~i~~  173 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL-CNETLTLKLYNNG----------------FTSVQG  173 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT-BSSEEEEECCSCC----------------CCEECT
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccch-hcceeEEEcCCCC----------------CcccCH
Confidence            66666666654 55555555   6666666 6666555433321 2344 44444444                223333


Q ss_pred             cccccCCcceeccc-c--ccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCC
Q psy3787         178 DKYKLDRTKTLTLC-K--VINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNR  243 (263)
Q Consensus       178 ~~~~~~~L~~L~l~-~--~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~  243 (263)
                      .....++|+.|+++ +  ++.+|...+...  .++|+. |++++|+++.+|...+   .++..+.+.++
T Consensus       174 ~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l--~~~L~~-L~l~~N~l~~l~~~~~---~~L~~L~l~~~  236 (239)
T 2xwt_C          174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGV--YSGPSL-LDVSQTSVTALPSKGL---EHLKELIARNT  236 (239)
T ss_dssp             TTTTTCEEEEEECTTCTTCCEECTTTTTTC--SBCCSE-EECTTCCCCCCCCTTC---TTCSEEECTTC
T ss_pred             hhcCCCCCCEEEcCCCCCcccCCHHHhhcc--ccCCcE-EECCCCccccCChhHh---ccCceeeccCc
Confidence            33333788899998 3  888877665543  026998 9999999999887643   45555555444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.86  E-value=2.4e-21  Score=176.47  Aligned_cols=138  Identities=20%  Similarity=0.167  Sum_probs=106.8

Q ss_pred             CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +++.|++++|.++......|.++++|++|++++|.+..+.  .|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            5788888888888732233888888888888888887553  47888888888888888888877778888888888888


Q ss_pred             cCcCccc-cccccCCCCcCEEEccCCcCCCcc-ccccCCCcccEEEecCCCCCCcchHHHHh
Q psy3787          82 NNKISEV-SSNVGDLINLAILDLSDNELTDVP-CELSSLFHLKSLFLGGNPIKTVRNDILQD  141 (263)
Q Consensus        82 ~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  141 (263)
                      +|.++.+ +..+..+++|++|++++|.+..++ ..+..+++|+.|++++|.++++++..+..
T Consensus       114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  175 (606)
T 3t6q_A          114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS  175 (606)
T ss_dssp             TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred             ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh
Confidence            8888876 556788888888888888888652 34445888888888888888876554433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.86  E-value=1.3e-21  Score=180.61  Aligned_cols=226  Identities=22%  Similarity=0.259  Sum_probs=137.0

Q ss_pred             CCEEEeecCccCCCCccccCCCCCCcEEEecCCCCC-CCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         5 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      |+.|++++|++.......+..+++|+.|++++|.+. .++  .+..+++|++|++++|.+..+.+..+..+++|+.|+++
T Consensus       383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~  462 (680)
T 1ziw_A          383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR  462 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred             CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence            444444444444421122555555555555555554 222  34555555555555555555555555555566666666


Q ss_pred             cCcCc---cccccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHH-------hHHHHhhhhh
Q psy3787          82 NNKIS---EVSSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQ-------DSKRIISHIK  150 (263)
Q Consensus        82 ~~~l~---~lp~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~-------~~~~~l~~l~  150 (263)
                      +|.++   .+|..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+++++...+.       .....++.++
T Consensus       463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~  542 (680)
T 1ziw_A          463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN  542 (680)
T ss_dssp             TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred             cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence            55543   345556666666666666666665543 356666666666666666654322110       0023444555


Q ss_pred             CCCCcccccccCCCCCCCcCCcccccc-cccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcc
Q psy3787         151 TSRLDYHCQNVDGGGMSSQESTSEINI-DKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTL  227 (263)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~  227 (263)
                      ++.+.                ...+|. .+..+++|++|+++  +++.+|...+....   +|+. |++++|+++.+++.
T Consensus       543 L~~N~----------------l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~---~L~~-L~L~~N~l~~~~~~  602 (680)
T 1ziw_A          543 LESNG----------------FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV---SLKS-LNLQKNLITSVEKK  602 (680)
T ss_dssp             CCSSC----------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---TCCE-EECTTSCCCBCCHH
T ss_pred             CCCCC----------------CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC---CCCE-EECCCCcCCccChh
Confidence            54444                334554 37888999999999  88888887665433   6998 99999999988876


Q ss_pred             ccc-cccccccccccCCceEEecc
Q psy3787         228 TLC-KVINIPESVYMNRPFALTYN  250 (263)
Q Consensus       228 ~~~-~~~~l~~~~~~~~~~~~~~~  250 (263)
                      .+. .+.++..+.+.+||+.+...
T Consensus       603 ~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          603 VFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             HHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             HhcccccccCEEEccCCCcccCCc
Confidence            554 56778888999999877654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=2.9e-21  Score=161.62  Aligned_cols=217  Identities=19%  Similarity=0.169  Sum_probs=174.5

Q ss_pred             CEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCc--hhhhhCCCCccEEEee
Q psy3787           6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNME--NDYFLTLTKLSLLNLK   81 (263)
Q Consensus         6 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~   81 (263)
                      +.++++++.++.  +|. .-.++++.|++++|.++.+|.  +..+++|++|++++|.+....  +..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~~--ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTS--VPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSS--CCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCccc--CCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            467888888877  665 123689999999999998884  789999999999999998553  4557789999999999


Q ss_pred             cCcCccccccccCCCCcCEEEccCCcCCCccc--cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccc
Q psy3787          82 NNKISEVSSNVGDLINLAILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQ  159 (263)
Q Consensus        82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~  159 (263)
                      +|.++.+|..+..+++|++|++++|.++.++.  .+..+++|+.|++++|.+..+.+..+.. ...++.++++.+.+   
T Consensus        87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l---  162 (306)
T 2z66_A           87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSF---  162 (306)
T ss_dssp             SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-CTTCCEEECTTCEE---
T ss_pred             CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-CcCCCEEECCCCcc---
Confidence            99999999989999999999999999998764  6899999999999999998866554433 24677777777663   


Q ss_pred             ccCCCCCCCcCCcc-cccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccc
Q psy3787         160 NVDGGGMSSQESTS-EINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIP  236 (263)
Q Consensus       160 ~~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~  236 (263)
                                  .+ ..|..+..+++|++|+++  .++.+++..+..   +++|+. |++++|+++.++...+..+.++.
T Consensus       163 ------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~  226 (306)
T 2z66_A          163 ------------QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS---LSSLQV-LNMSHNNFFSLDTFPYKCLNSLQ  226 (306)
T ss_dssp             ------------GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT---CTTCCE-EECTTSCCSBCCSGGGTTCTTCC
T ss_pred             ------------ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC---CCCCCE-EECCCCccCccChhhccCcccCC
Confidence                        22 356678899999999999  788775443332   336999 99999999998887666667777


Q ss_pred             cccccCCce
Q psy3787         237 ESVYMNRPF  245 (263)
Q Consensus       237 ~~~~~~~~~  245 (263)
                      .+.+.+|+.
T Consensus       227 ~L~L~~N~l  235 (306)
T 2z66_A          227 VLDYSLNHI  235 (306)
T ss_dssp             EEECTTSCC
T ss_pred             EeECCCCCC
Confidence            777777753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.86  E-value=1.7e-20  Score=159.48  Aligned_cols=128  Identities=26%  Similarity=0.376  Sum_probs=58.8

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN   82 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~   82 (263)
                      ++|++|++++|+++.  ++.+.++++|++|++++|.++.++.+..+++|++|++++|.+..+++  +..+++|+.+++++
T Consensus        66 ~~L~~L~l~~n~i~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~  141 (347)
T 4fmz_A           66 TNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGA  141 (347)
T ss_dssp             TTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTT
T ss_pred             CCccEEEccCCcccc--chhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCC
Confidence            344444444444443  33344444444444444444444444444444444444444444333  34444444444444


Q ss_pred             CcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcc
Q psy3787          83 NKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVR  135 (263)
Q Consensus        83 ~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~  135 (263)
                      |.....+..+..+++|+++++++|.+..++. ++.+++|+.+++++|.+.+++
T Consensus       142 n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~  193 (347)
T 4fmz_A          142 NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS  193 (347)
T ss_dssp             CTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG
T ss_pred             CCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc
Confidence            4222222224444455555555554444432 445555555555555555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.86  E-value=2.1e-20  Score=158.99  Aligned_cols=226  Identities=19%  Similarity=0.266  Sum_probs=126.8

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCC-CCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQ-LTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      +++|++|++++|.+..  ++.+..+++|+.|++++|. +..++.+..+++|++|++++|.+...++  +..+++|+++++
T Consensus       109 l~~L~~L~l~~n~i~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l  184 (347)
T 4fmz_A          109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL  184 (347)
T ss_dssp             CTTCSEEECTTSCCCC--CGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEEC
T ss_pred             CCcCCEEECcCCcccC--chhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEc
Confidence            5778888888888776  5557777888888888774 4455556667777777777777666554  556667777777


Q ss_pred             ecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccc-
Q psy3787          81 KNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQ-  159 (263)
Q Consensus        81 ~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~-  159 (263)
                      ++|.++.++. +..+++|+.+++++|.+..++. +..+++|+.|++++|.++.++. ...  ...++.++++.+.+... 
T Consensus       185 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~--l~~L~~L~l~~n~l~~~~  259 (347)
T 4fmz_A          185 NYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LAN--LSQLTWLEIGTNQISDIN  259 (347)
T ss_dssp             TTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTT--CTTCCEEECCSSCCCCCG
T ss_pred             cCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhc--CCCCCEEECCCCccCCCh
Confidence            7776665554 4455555555555555554433 4555555555555555555443 111  22344444433332000 


Q ss_pred             ------ccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccc
Q psy3787         160 ------NVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCK  231 (263)
Q Consensus       160 ------~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~  231 (263)
                            .+..-..+.. ....+ +.+..+++|++|+++  .++..+...+..   +++|+. |++++|+++.+++  ...
T Consensus       260 ~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---l~~L~~-L~L~~n~l~~~~~--~~~  331 (347)
T 4fmz_A          260 AVKDLTKLKMLNVGSN-QISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGG---LTNLTT-LFLSQNHITDIRP--LAS  331 (347)
T ss_dssp             GGTTCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHT---CTTCSE-EECCSSSCCCCGG--GGG
T ss_pred             hHhcCCCcCEEEccCC-ccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhc---cccCCE-EEccCCccccccC--hhh
Confidence                  0000000000 01222 345666777777777  555444433332   225777 7777777776655  333


Q ss_pred             ccccccccccCCc
Q psy3787         232 VINIPESVYMNRP  244 (263)
Q Consensus       232 ~~~l~~~~~~~~~  244 (263)
                      +.++..+.+.+|+
T Consensus       332 l~~L~~L~l~~N~  344 (347)
T 4fmz_A          332 LSKMDSADFANQV  344 (347)
T ss_dssp             CTTCSEESSSCC-
T ss_pred             hhccceeehhhhc
Confidence            4566666666665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=1.4e-21  Score=166.90  Aligned_cols=218  Identities=19%  Similarity=0.217  Sum_probs=168.0

Q ss_pred             CCCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCch-hhhhCCCCccE
Q psy3787           1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMEN-DYFLTLTKLSL   77 (263)
Q Consensus         1 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~   77 (263)
                      .+++|+.|++++|+++......+.++++|++|++++|.++.++.  +..+++|++|++++|.+..++. ..+..+++|++
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI  153 (353)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred             cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE
Confidence            36789999999999987323339999999999999999998874  7889999999999999998877 66888999999


Q ss_pred             EEeecC-cCccc-cccccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCC
Q psy3787          78 LNLKNN-KISEV-SSNVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRL  154 (263)
Q Consensus        78 L~l~~~-~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~  154 (263)
                      |++++| .++.+ +..+..+++|++|++++|.+..+ |..++.+++|+.|++++|.+..++...+.. ...++.++++.+
T Consensus       154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~L~~n  232 (353)
T 2z80_A          154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV-TSSVECLELRDT  232 (353)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH-TTTEEEEEEESC
T ss_pred             EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh-cccccEEECCCC
Confidence            999999 57766 45688999999999999999876 677999999999999999998887665433 245667777665


Q ss_pred             cccccccCCCCC------------CCcC----CcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEec
Q psy3787         155 DYHCQNVDGGGM------------SSQE----STSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINI  216 (263)
Q Consensus       155 ~~~~~~~~~~~~------------~~~~----~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~l  216 (263)
                      .+.-........            ....    ....+|..+..+++|++|+++  .++.+|.+++...   ++|+. |++
T Consensus       233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l---~~L~~-L~L  308 (353)
T 2z80_A          233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRL---TSLQK-IWL  308 (353)
T ss_dssp             BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTC---TTCCE-EEC
T ss_pred             ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcC---CCCCE-EEe
Confidence            542110000000            0000    011355667889999999999  8899998875433   37999 999


Q ss_pred             cCCcccc
Q psy3787         217 DKYKLDR  223 (263)
Q Consensus       217 s~n~l~~  223 (263)
                      ++|++..
T Consensus       309 ~~N~~~~  315 (353)
T 2z80_A          309 HTNPWDC  315 (353)
T ss_dssp             CSSCBCC
T ss_pred             eCCCccC
Confidence            9998873

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.86  E-value=9.1e-22  Score=180.41  Aligned_cols=218  Identities=19%  Similarity=0.273  Sum_probs=119.0

Q ss_pred             CCCEEEeecCccCCCCccc-cCCCCC-CcEEEecCCCCCCCcC-CCC--CCCCcEEEecCCCCCCCchhhhh-------C
Q psy3787           4 HLKTLDLSHNKLVSDSLPL-FIDMRS-LTELNLSYNQLTMLPV-CTD--CKNLTHLLLGFNKINNMENDYFL-------T   71 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~-~~~l~~-L~~L~l~~n~l~~l~~-~~~--~~~L~~L~l~~n~~~~~~~~~~~-------~   71 (263)
                      +|+.|++++|++..  +|. +.++++ |+.|++++|.++.+|. +..  +++|++|++++|.+.+..+..+.       .
T Consensus       354 ~L~~L~L~~N~l~~--lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~  431 (636)
T 4eco_A          354 KLASLNLAYNQITE--IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK  431 (636)
T ss_dssp             EESEEECCSSEEEE--CCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred             CCCEEECCCCcccc--ccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence            34444444444442  333 445555 5555555555555442 222  22455555555555544444344       4


Q ss_pred             CCCccEEEeecCcCccccccc-cCCCCcCEEEccCCcCCCcccccc-CC-------CcccEEEecCCCCCCcchHHHHhH
Q psy3787          72 LTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELS-SL-------FHLKSLFLGGNPIKTVRNDILQDS  142 (263)
Q Consensus        72 l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~n~l~~l~~~~~-~l-------~~L~~L~l~~n~l~~~~~~~~~~~  142 (263)
                      +.+|++|++++|+++.+|..+ ..+++|++|++++|.++.+|..+. ..       ++|+.|++++|.++.+|..++...
T Consensus       432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~  511 (636)
T 4eco_A          432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT  511 (636)
T ss_dssp             CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred             CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence            445566666666655555442 345556666666665555544321 11       256666666666665554443111


Q ss_pred             HHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--------c-ccccChhHHhhcCCccceeEE
Q psy3787         143 KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--------K-VINIPESVYMRGMSSQECTIE  213 (263)
Q Consensus       143 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--------~-~~~l~~~~~~~~~~~~~L~~~  213 (263)
                      ...++.++++.+.                ...+|..+..+++|++|+++        + .+.+|..+..+.    +|+. 
T Consensus       512 l~~L~~L~Ls~N~----------------l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~----~L~~-  570 (636)
T 4eco_A          512 LPYLVGIDLSYNS----------------FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP----SLTQ-  570 (636)
T ss_dssp             CTTCCEEECCSSC----------------CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS----SCCE-
T ss_pred             CCCcCEEECCCCC----------------CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC----CCCE-
Confidence            2345555555554                33366667777777777772        2 356666665544    3777 


Q ss_pred             EeccCCcccccCccccccccccccccccCCceEE
Q psy3787         214 INIDKYKLDRTKTLTLCKVINIPESVYMNRPFAL  247 (263)
Q Consensus       214 L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~  247 (263)
                      |++++|+++.+|....   .++..+.+.+||..+
T Consensus       571 L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          571 LQIGSNDIRKVNEKIT---PNISVLDIKDNPNIS  601 (636)
T ss_dssp             EECCSSCCCBCCSCCC---TTCCEEECCSCTTCE
T ss_pred             EECCCCcCCccCHhHh---CcCCEEECcCCCCcc
Confidence            8888888777776533   556667777776443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=1.5e-20  Score=154.88  Aligned_cols=151  Identities=22%  Similarity=0.320  Sum_probs=110.0

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +++|+.|++++|.+..  ++.+..+++|++|++++|.+..++.+..+++|++|++++|.++++++..+..+++|++|+++
T Consensus        40 l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             HTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            4567888888887776  66677788888888888888877777778888888888888887777777778888888888


Q ss_pred             cCcCcccccc-ccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCc
Q psy3787          82 NNKISEVSSN-VGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLD  155 (263)
Q Consensus        82 ~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~  155 (263)
                      +|+++.++.. +..+++|++|++++|.++.++.. ++.+++|+.|++++|.+++++...+... ..++.+++..+.
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~  192 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL-TQLKDLRLYQNQ  192 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSC
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC-ccCCEEECCCCc
Confidence            8888866554 57778888888888888776544 6778888888888888777665432221 234444444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.85  E-value=3.5e-20  Score=152.48  Aligned_cols=172  Identities=28%  Similarity=0.337  Sum_probs=146.7

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      +++++|++++|++.......+.++++|++|++++|.++.++.  +..+++|++|++++|.+..+++..+..+++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            468999999999998333349999999999999999998874  688999999999999999999888899999999999


Q ss_pred             ecCcCccccc-cccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccc
Q psy3787          81 KNNKISEVSS-NVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC  158 (263)
Q Consensus        81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~  158 (263)
                      ++|.++.++. .+..+++|++|++++|.++.+|.. ++.+++|+.|++++|.++.++...+.. ...++.++++.+.+  
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l--  193 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK-LTELKTLKLDNNQL--  193 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT-CTTCCEEECCSSCC--
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhcc-CCCcCEEECCCCcC--
Confidence            9999998765 478999999999999999988765 889999999999999999988765543 24677788877763  


Q ss_pred             cccCCCCCCCcCCcccccc-cccccCCcceeccc
Q psy3787         159 QNVDGGGMSSQESTSEINI-DKYKLDRTKTLTLC  191 (263)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~  191 (263)
                                    ..++. .+..+++|+.|+++
T Consensus       194 --------------~~~~~~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          194 --------------KRVPEGAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             --------------SCCCTTTTTTCTTCCEEECC
T ss_pred             --------------CcCCHHHhccccCCCEEEec
Confidence                          33443 36788999999999

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=9.3e-21  Score=178.07  Aligned_cols=151  Identities=21%  Similarity=0.274  Sum_probs=110.3

Q ss_pred             CCCCCEEEeecCccCCCCccc---cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCC-ccE
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL---FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTK-LSL   77 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~   77 (263)
                      +++|+.|++++|.+..  +|.   +.++++|+.|++++|.++.+|.+..+++|+.|++++|.+..++.. +..+++ |+.
T Consensus       547 l~~L~~L~Ls~N~L~~--ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~  623 (876)
T 4ecn_A          547 GPKIQIFYMGYNNLEE--FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPED-FCAFTDQVEG  623 (876)
T ss_dssp             TTTCCEEECCSSCCCB--CCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTT-SCEECTTCCE
T ss_pred             cCCccEEEeeCCcCCc--cCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHH-HhhccccCCE
Confidence            4578888888888874  554   788888888888888888777788888888888888888855543 677777 888


Q ss_pred             EEeecCcCccccccccCCCC--cCEEEccCCcCCCc-c---cccc--CCCcccEEEecCCCCCCcchHHHHhHHHHhhhh
Q psy3787          78 LNLKNNKISEVSSNVGDLIN--LAILDLSDNELTDV-P---CELS--SLFHLKSLFLGGNPIKTVRNDILQDSKRIISHI  149 (263)
Q Consensus        78 L~l~~~~l~~lp~~~~~l~~--L~~L~l~~n~l~~l-~---~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l  149 (263)
                      |++++|+++.+|..+.....  |+.|++++|.+... |   ..+.  .+++|+.|++++|.++.+|...+... ..++.|
T Consensus       624 L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l-~~L~~L  702 (876)
T 4ecn_A          624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG-SPISTI  702 (876)
T ss_dssp             EECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTT-CCCSEE
T ss_pred             EECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccC-CCCCEE
Confidence            88888888888877665543  88888888877643 2   1222  34478888888888888887765432 346667


Q ss_pred             hCCCCcc
Q psy3787         150 KTSRLDY  156 (263)
Q Consensus       150 ~~~~~~~  156 (263)
                      +++.+.+
T Consensus       703 ~Ls~N~L  709 (876)
T 4ecn_A          703 ILSNNLM  709 (876)
T ss_dssp             ECCSCCC
T ss_pred             ECCCCcC
Confidence            7766653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=5.6e-21  Score=174.01  Aligned_cols=242  Identities=19%  Similarity=0.154  Sum_probs=146.3

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCC-CCc--CCCCCCCCcEEEecCCCCCCCc--hhhhhCCCCcc
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLP--VCTDCKNLTHLLLGFNKINNME--NDYFLTLTKLS   76 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~--~~~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~   76 (263)
                      +++|++|++++|.+.......+.++++|++|++++|.+. .++  .+..+++|++|++++|.+....  +..+..+++|+
T Consensus       300 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  379 (606)
T 3t6q_A          300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ  379 (606)
T ss_dssp             CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCC
T ss_pred             cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCC
Confidence            466777777777776621222666777777777777665 333  2566666777777777666554  44466666666


Q ss_pred             EEEeecCcCccc-cccccCCCCcCEEEccCCcCCCc-cc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCC
Q psy3787          77 LLNLKNNKISEV-SSNVGDLINLAILDLSDNELTDV-PC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSR  153 (263)
Q Consensus        77 ~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~  153 (263)
                      +|++++|++..+ |..+..+++|++|++++|.+... +. .+..+++|+.|++++|.++..++..+.. ...++.+++++
T Consensus       380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~  458 (606)
T 3t6q_A          380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG-LPALQHLNLQG  458 (606)
T ss_dssp             EEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT-CTTCCEEECTT
T ss_pred             EEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC-CCCCCEEECCC
Confidence            666666666644 44556666666666666666533 22 2566666666666666665544333222 13444555544


Q ss_pred             Ccccccc------------cCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCC
Q psy3787         154 LDYHCQN------------VDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKY  219 (263)
Q Consensus       154 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n  219 (263)
                      +.+.-..            +..-..+.....+..|..+..+++|++|+++  .++.++...+..   ++.| . |++++|
T Consensus       459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~---l~~L-~-L~L~~N  533 (606)
T 3t6q_A          459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH---LKGI-Y-LNLASN  533 (606)
T ss_dssp             CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT---CCSC-E-EECCSS
T ss_pred             CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCc---cccc-E-EECcCC
Confidence            4321100            0000000001133345668888999999999  676554433332   3368 8 999999


Q ss_pred             cccccCccccccccccccccccCCceEEec
Q psy3787         220 KLDRTKTLTLCKVINIPESVYMNRPFALTY  249 (263)
Q Consensus       220 ~l~~ip~~~~~~~~~l~~~~~~~~~~~~~~  249 (263)
                      +++.+|+..+..+.++..+.+.+||+.+..
T Consensus       534 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          534 HISIILPSLLPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             CCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred             cccccCHhhcccCCCCCEEeCCCCCccccC
Confidence            999888877777788899999999987744

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.85  E-value=2.5e-21  Score=162.60  Aligned_cols=197  Identities=15%  Similarity=0.129  Sum_probs=157.8

Q ss_pred             CCCCCEEEeecCccCCCCcccc--CCCCCCcEEEecCCCCCCCcC-CCCC-----CCCcEEEecCCCCCCCchhhhhCCC
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLF--IDMRSLTELNLSYNQLTMLPV-CTDC-----KNLTHLLLGFNKINNMENDYFLTLT   73 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~l~~l~~-~~~~-----~~L~~L~l~~n~~~~~~~~~~~~l~   73 (263)
                      +++|++|++++|++.+.....+  ..+++|++|++++|.++.+|. +..+     ++|++|++++|.+.++++..+..++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            6789999999999986333334  899999999999999997763 4444     8999999999999999988899999


Q ss_pred             CccEEEeecCcCcc---ccccc--cCCCCcCEEEccCCcCCCcc---cc-ccCCCcccEEEecCCCCCCcch-HHHHhHH
Q psy3787          74 KLSLLNLKNNKISE---VSSNV--GDLINLAILDLSDNELTDVP---CE-LSSLFHLKSLFLGGNPIKTVRN-DILQDSK  143 (263)
Q Consensus        74 ~L~~L~l~~~~l~~---lp~~~--~~l~~L~~L~l~~n~l~~l~---~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~  143 (263)
                      +|++|++++|++..   ++..+  ..+++|++|++++|.++.++   .. +..+++|+.|++++|.+++.++ ..+.. .
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-l  252 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW-P  252 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC-C
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh-c
Confidence            99999999999763   34444  78999999999999999543   22 4688999999999999998552 22211 3


Q ss_pred             HHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcc
Q psy3787         144 RIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKL  221 (263)
Q Consensus       144 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l  221 (263)
                      ..++.++++.+.                ...+|..+.  ++|++|+++  +++.+|. +..    +++|+. |++++|++
T Consensus       253 ~~L~~L~Ls~N~----------------l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~----l~~L~~-L~L~~N~l  308 (312)
T 1wwl_A          253 SQLNSLNLSFTG----------------LKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDE----LPQVGN-LSLKGNPF  308 (312)
T ss_dssp             TTCCEEECTTSC----------------CSSCCSSCC--SEEEEEECCSSCCCSCCC-TTT----SCEEEE-EECTTCTT
T ss_pred             CCCCEEECCCCc----------------cChhhhhcc--CCceEEECCCCCCCCChh-Hhh----CCCCCE-EeccCCCC
Confidence            467888887777                345666665  899999999  8888876 433    446999 99999988


Q ss_pred             cc
Q psy3787         222 DR  223 (263)
Q Consensus       222 ~~  223 (263)
                      +.
T Consensus       309 ~~  310 (312)
T 1wwl_A          309 LD  310 (312)
T ss_dssp             TC
T ss_pred             CC
Confidence            75

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=1e-20  Score=177.78  Aligned_cols=209  Identities=17%  Similarity=0.208  Sum_probs=100.5

Q ss_pred             CCCCCEEEeecCccCCCCccc-cCCCCC-CcEEEecCCCCCCCcC-CCCC--CCCcEEEecCCC----------------
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL-FIDMRS-LTELNLSYNQLTMLPV-CTDC--KNLTHLLLGFNK----------------   60 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~-L~~L~l~~n~l~~l~~-~~~~--~~L~~L~l~~n~----------------   60 (263)
                      +++|+.|++++|.+..  +|. +.++++ |+.|++++|.++.+|. +...  ++|+.|++++|.                
T Consensus       594 L~~L~~L~Ls~N~l~~--lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~  671 (876)
T 4ecn_A          594 NVKLTDLKLDYNQIEE--IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK  671 (876)
T ss_dssp             TSEESEEECCSSCCSC--CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred             CCcceEEECcCCcccc--chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence            4566677777776663  554 666666 7777777766665553 2222  224555555554                


Q ss_pred             -------------CCCCchhhhhCCCCccEEEeecCcCccccccccCCC--------CcCEEEccCCcCCCcccccc--C
Q psy3787          61 -------------INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLI--------NLAILDLSDNELTDVPCELS--S  117 (263)
Q Consensus        61 -------------~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~--------~L~~L~l~~n~l~~l~~~~~--~  117 (263)
                                   +..++...+..+++|+.|++++|+++.+|..+....        +|+.|++++|.++.+|..+.  .
T Consensus       672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~  751 (876)
T 4ecn_A          672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT  751 (876)
T ss_dssp             CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTT
T ss_pred             CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhcc
Confidence                         444444434444555555555555554444332211        45555555555555544443  4


Q ss_pred             CCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccc
Q psy3787         118 LFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVIN  195 (263)
Q Consensus       118 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~  195 (263)
                      +++|+.|++++|.++++|..+...  ..|+.|+++.+..         .......+.+|..+..+++|+.|+++  .++.
T Consensus       752 l~~L~~L~Ls~N~L~~lp~~l~~L--~~L~~L~Ls~N~~---------ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~  820 (876)
T 4ecn_A          752 LPYLSNMDVSYNCFSSFPTQPLNS--SQLKAFGIRHQRD---------AEGNRILRQWPTGITTCPSLIQLQIGSNDIRK  820 (876)
T ss_dssp             CTTCCEEECCSSCCSSCCCGGGGC--TTCCEEECCCCBC---------TTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB
T ss_pred             CCCcCEEEeCCCCCCccchhhhcC--CCCCEEECCCCCC---------cccccccccChHHHhcCCCCCEEECCCCCCCc
Confidence            555555555555555544433322  1333343322110         00000023344455555555555555  4455


Q ss_pred             cChhHHhhcCCccceeEEEeccCCcccccCccccc
Q psy3787         196 IPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLC  230 (263)
Q Consensus       196 l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~  230 (263)
                      +|..++  .    +|+. |++++|++..++...++
T Consensus       821 Ip~~l~--~----~L~~-LdLs~N~l~~i~~~~~~  848 (876)
T 4ecn_A          821 VDEKLT--P----QLYI-LDIADNPNISIDVTSVC  848 (876)
T ss_dssp             CCSCCC--S----SSCE-EECCSCTTCEEECGGGH
T ss_pred             cCHhhc--C----CCCE-EECCCCCCCccChHHcc
Confidence            555432  1    3555 55555555555444444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.85  E-value=1.7e-20  Score=167.82  Aligned_cols=149  Identities=21%  Similarity=0.206  Sum_probs=100.5

Q ss_pred             cCCCCcCEEEccCCcCCC-ccccccCCCcccEEEecCCCCCCcchHHHHhH-HHHhhhhhCCCCcccccccCCCCCC---
Q psy3787          93 GDLINLAILDLSDNELTD-VPCELSSLFHLKSLFLGGNPIKTVRNDILQDS-KRIISHIKTSRLDYHCQNVDGGGMS---  167 (263)
Q Consensus        93 ~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~---  167 (263)
                      ..+++|++|++++|.++. +|..++.+++|+.|++++|.+++++....... ...++.++++.+.+.-. +....+.   
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~-l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD-EKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC-GGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc-cccchhccCc
Confidence            466778888888888875 57678888888888888888887543211111 34666777766654210 0000000   


Q ss_pred             --------CcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccccccccc
Q psy3787         168 --------SQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPE  237 (263)
Q Consensus       168 --------~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~  237 (263)
                              .....+..+..+.  ++|+.|+++  +++.+|.+++.+.    +|+. |++++|+++.+|...+..+.++..
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~----~L~~-L~L~~N~l~~l~~~~~~~l~~L~~  472 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLE----ALQE-LNVASNQLKSVPDGIFDRLTSLQK  472 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCT----TCCE-EECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCC----CCCE-EECCCCcCCccCHHHhccCCcccE
Confidence                    0000122333232  789999999  8889998888555    5999 999999999999876666788889


Q ss_pred             ccccCCceEEec
Q psy3787         238 SVYMNRPFALTY  249 (263)
Q Consensus       238 ~~~~~~~~~~~~  249 (263)
                      +.+.+||..+..
T Consensus       473 L~l~~N~~~c~c  484 (520)
T 2z7x_B          473 IWLHTNPWDCSC  484 (520)
T ss_dssp             EECCSSCBCCCH
T ss_pred             EECcCCCCcccC
Confidence            999999976643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.85  E-value=1.7e-20  Score=173.03  Aligned_cols=237  Identities=19%  Similarity=0.257  Sum_probs=162.5

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      +++++|++++|.++......|.++++|++|++++|.++.++  .+..+++|++|++++|.+..+++..|..+++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            46899999999988833334889999999999999988764  3778899999999999999888878889999999999


Q ss_pred             ecCcCcccc-ccccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhH-HHHhhhhhCCCCccc
Q psy3787          81 KNNKISEVS-SNVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDS-KRIISHIKTSRLDYH  157 (263)
Q Consensus        81 ~~~~l~~lp-~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~l~~l~~~~~~~~  157 (263)
                      ++|+++.++ ..++.+++|++|++++|.++.. +..++.+++|+.|++++|.++++++..+... ...++.++++.+.+.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            999998776 5688899999999999988865 5568889999999999999988877655432 345666766655431


Q ss_pred             ccc---------c---------------------------CCCCCCCcCCcccccccccccCC--cceeccc--cccccC
Q psy3787         158 CQN---------V---------------------------DGGGMSSQESTSEINIDKYKLDR--TKTLTLC--KVINIP  197 (263)
Q Consensus       158 ~~~---------~---------------------------~~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~--~~~~l~  197 (263)
                      -..         .                           ..-........+..+..+..++.  |++|+++  .++.++
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  264 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG  264 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence            000         0                           00000000001122333444433  7777777  555554


Q ss_pred             hhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCC
Q psy3787         198 ESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNR  243 (263)
Q Consensus       198 ~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~  243 (263)
                      +..+..   +++|+. |++++|+++.+++..+..+.++..+.+.++
T Consensus       265 ~~~~~~---l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~  306 (680)
T 1ziw_A          265 NDSFAW---LPQLEY-FFLEYNNIQHLFSHSLHGLFNVRYLNLKRS  306 (680)
T ss_dssp             TTTTTT---CTTCCE-EECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred             cccccC---cccccE-eeCCCCccCccChhhhcCCCCccEEeccch
Confidence            433322   225777 777777777666555555555555555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.84  E-value=8.2e-20  Score=161.50  Aligned_cols=209  Identities=22%  Similarity=0.312  Sum_probs=118.2

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +++|+.|++++|.+..  ++.+..+++|++|++++|.+..++.+..+++|+.|++++|.+.+++  .+..+++|+.|+++
T Consensus       176 l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          176 LTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLA  251 (466)
T ss_dssp             CTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECC
T ss_pred             CCCCCEEECcCCcCCC--ChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch--hhhcCCCCCEEECC
Confidence            4566667777766655  4556666667777777666665555555666666666666666553  25566667777777


Q ss_pred             cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccccc
Q psy3787          82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV  161 (263)
Q Consensus        82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  161 (263)
                      +|.++.++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.++++++ ..  ....++.++++.+.+     
T Consensus       252 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~--~l~~L~~L~L~~n~l-----  321 (466)
T 1o6v_A          252 NNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-IS--NLKNLTYLTLYFNNI-----  321 (466)
T ss_dssp             SSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GG--GCTTCSEEECCSSCC-----
T ss_pred             CCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hc--CCCCCCEEECcCCcC-----
Confidence            776665544 5566667777777776666554 6666677777777776666554 11  123455555555442     


Q ss_pred             CCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccccccccccc
Q psy3787         162 DGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESV  239 (263)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~  239 (263)
                                 ...++ +..+++|++|+++  .++.++ .+..    +++|+. |++++|+++.+++  ...+.++..+.
T Consensus       322 -----------~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~----l~~L~~-L~l~~n~l~~~~~--~~~l~~L~~L~  381 (466)
T 1o6v_A          322 -----------SDISP-VSSLTKLQRLFFYNNKVSDVS-SLAN----LTNINW-LSAGHNQISDLTP--LANLTRITQLG  381 (466)
T ss_dssp             -----------SCCGG-GGGCTTCCEEECCSSCCCCCG-GGTT----CTTCCE-EECCSSCCCBCGG--GTTCTTCCEEE
T ss_pred             -----------CCchh-hccCccCCEeECCCCccCCch-hhcc----CCCCCE-EeCCCCccCccch--hhcCCCCCEEe
Confidence                       11121 4455566666665  444442 2222    224665 6666666554443  22234444444


Q ss_pred             ccCCc
Q psy3787         240 YMNRP  244 (263)
Q Consensus       240 ~~~~~  244 (263)
                      +.+|+
T Consensus       382 l~~n~  386 (466)
T 1o6v_A          382 LNDQA  386 (466)
T ss_dssp             CCCEE
T ss_pred             ccCCc
Confidence            44444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.84  E-value=1.1e-20  Score=172.06  Aligned_cols=236  Identities=17%  Similarity=0.115  Sum_probs=143.8

Q ss_pred             CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCc--hhhhhCCCCccEEEee
Q psy3787           4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNME--NDYFLTLTKLSLLNLK   81 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~   81 (263)
                      +|++|++++|.+..  +|.+ .+++|+.|++++|.......+..+++|++|++++|.+....  +..+..+++|++|+++
T Consensus       308 ~L~~L~l~~n~l~~--lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~  384 (606)
T 3vq2_A          308 KWQSLSIIRCQLKQ--FPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS  384 (606)
T ss_dssp             CCSEEEEESCCCSS--CCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECC
T ss_pred             cCCEEEcccccCcc--cccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECC
Confidence            34444444444422  3333 44444444444442221113445666777777777666542  5557778888888888


Q ss_pred             cCcCccccccccCCCCcCEEEccCCcCCCcc--ccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccc
Q psy3787          82 NNKISEVSSNVGDLINLAILDLSDNELTDVP--CELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQ  159 (263)
Q Consensus        82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~  159 (263)
                      +|.++.+|..+..+++|+.|++++|.+...+  ..+..+++|+.|++++|.+.+..+..+.. ...++.++++++.+.-.
T Consensus       385 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~  463 (606)
T 3vq2_A          385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-LTSLNTLKMAGNSFKDN  463 (606)
T ss_dssp             SCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGG
T ss_pred             CCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC-CCCCCEEECCCCcCCCc
Confidence            8888877777778888888888888777653  35777888888888888877744433222 23556666655543210


Q ss_pred             ----------ccCCCCCCCcCCcccccccccccCCcceeccc--ccccc-ChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787         160 ----------NVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINI-PESVYMRGMSSQECTIEINIDKYKLDRTKT  226 (263)
Q Consensus       160 ----------~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l-~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~  226 (263)
                                .+..-..+.....+..+..+..+++|++|+++  +++.+ |..+..+    ++|+. |++++|+++.+|.
T Consensus       464 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----~~L~~-L~l~~N~l~~~p~  538 (606)
T 3vq2_A          464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL----YSLST-LDCSFNRIETSKG  538 (606)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC----TTCCE-EECTTSCCCCEES
T ss_pred             chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC----CcCCE-EECCCCcCcccCH
Confidence                      00000001111123345567788888888888  67666 4333333    35998 9999999998887


Q ss_pred             ccccccc-ccccccccCCceEEec
Q psy3787         227 LTLCKVI-NIPESVYMNRPFALTY  249 (263)
Q Consensus       227 ~~~~~~~-~l~~~~~~~~~~~~~~  249 (263)
                      . ...+. ++..+.+.+||..+..
T Consensus       539 ~-~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          539 I-LQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             C-GGGSCTTCCEEECCSCCCCCSS
T ss_pred             h-HhhhcccCcEEEccCCCcccCC
Confidence            6 44454 4778889999977643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=3.7e-20  Score=155.25  Aligned_cols=196  Identities=21%  Similarity=0.257  Sum_probs=163.0

Q ss_pred             ccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcC
Q psy3787          20 LPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLA   99 (263)
Q Consensus        20 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~   99 (263)
                      ......+++|+.|++++|.+..++.+..+++|++|++++|.+..+++  +..+++|++|++++|+++.++ .+..+++|+
T Consensus        34 ~~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~  110 (308)
T 1h6u_A           34 TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIK  110 (308)
T ss_dssp             EECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred             eecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence            34466789999999999999999999999999999999999998877  889999999999999999886 578899999


Q ss_pred             EEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccc
Q psy3787         100 ILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK  179 (263)
Q Consensus       100 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (263)
                      +|++++|.++.++. +..+++|+.|++++|.+++++. ...  ...++.++++.+.                ...++. +
T Consensus       111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~--l~~L~~L~l~~n~----------------l~~~~~-l  169 (308)
T 1h6u_A          111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAG--LTNLQYLSIGNAQ----------------VSDLTP-L  169 (308)
T ss_dssp             EEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGG--CTTCCEEECCSSC----------------CCCCGG-G
T ss_pred             EEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccC--CCCccEEEccCCc----------------CCCChh-h
Confidence            99999999998874 8999999999999999999876 111  3467778887766                333444 8


Q ss_pred             cccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEE
Q psy3787         180 YKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFAL  247 (263)
Q Consensus       180 ~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~  247 (263)
                      ..+++|+.|+++  .++.++. +..    +++|+. |++++|+++.+++  ...+.++..+.+.+|+...
T Consensus       170 ~~l~~L~~L~l~~n~l~~~~~-l~~----l~~L~~-L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          170 ANLSKLTTLKADDNKISDISP-LAS----LPNLIE-VHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG-GGG----CTTCCE-EECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             cCCCCCCEEECCCCccCcChh-hcC----CCCCCE-EEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            889999999999  7888775 333    446999 9999999998885  3446777788888887544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.83  E-value=2.7e-20  Score=168.11  Aligned_cols=137  Identities=26%  Similarity=0.312  Sum_probs=121.2

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      ++++.|++++|.++......|.++++|++|++++|.++.++  .+..+++|++|++++|.+..+++.+|.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            36899999999998833334999999999999999999765  4889999999999999999998888999999999999


Q ss_pred             ecCcCccccc-cccCCCCcCEEEccCCcCCC--ccccccCCCcccEEEecCCCCCCcchHHH
Q psy3787          81 KNNKISEVSS-NVGDLINLAILDLSDNELTD--VPCELSSLFHLKSLFLGGNPIKTVRNDIL  139 (263)
Q Consensus        81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~  139 (263)
                      ++|+++.++. .++.+++|++|++++|.+..  +|..++.+++|+.|++++|.++++++..+
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~  169 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL  169 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc
Confidence            9999998876 58899999999999999985  68889999999999999999998765543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.83  E-value=5.8e-20  Score=162.08  Aligned_cols=215  Identities=23%  Similarity=0.231  Sum_probs=144.0

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +++|++|++++|.++.  +|.+..+++|++|++++|.++.++ +..+++|++|++++|.+++++   +..+++|++|+++
T Consensus        41 l~~L~~L~Ls~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~  114 (457)
T 3bz5_A           41 LATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD  114 (457)
T ss_dssp             HTTCCEEECCSSCCCC--CTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECC
T ss_pred             cCCCCEEEccCCCccc--ChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECC
Confidence            5678899999998887  567888889999999999888876 778888888898888888763   6778888888888


Q ss_pred             cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCC-CCCcchHHHHhHHHHhhhhhCCCCcccccc
Q psy3787          82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNP-IKTVRNDILQDSKRIISHIKTSRLDYHCQN  160 (263)
Q Consensus        82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  160 (263)
                      +|+++.+|  ++.+++|++|++++|.++.++  ++.+++|+.+++++|. +..++.  ..  ...++.++++.+.+.-  
T Consensus       115 ~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~--~~--l~~L~~L~ls~n~l~~--  184 (457)
T 3bz5_A          115 TNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDV--TP--QTQLTTLDCSFNKITE--  184 (457)
T ss_dssp             SSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCC--TT--CTTCCEEECCSSCCCC--
T ss_pred             CCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccccc--cc--CCcCCEEECCCCccce--
Confidence            88888775  677888888888888887763  5666666666666663 333321  01  2234444444443210  


Q ss_pred             cCCCCCCCcCC----------cccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccc
Q psy3787         161 VDGGGMSSQES----------TSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLT  228 (263)
Q Consensus       161 ~~~~~~~~~~~----------~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~  228 (263)
                         ..+.....          ...+  .+..+++|++|+++  +++.+|  +..    +++|+. |++++|+++.+|...
T Consensus       185 ---l~l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~----l~~L~~-L~l~~N~l~~~~~~~  252 (457)
T 3bz5_A          185 ---LDVSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTP----LTQLTY-FDCSVNPLTELDVST  252 (457)
T ss_dssp             ---CCCTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC--CTT----CTTCSE-EECCSSCCSCCCCTT
T ss_pred             ---eccccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC--ccc----cCCCCE-EEeeCCcCCCcCHHH
Confidence               00000000          1122  36777888888888  777776  333    335888 999999888877654


Q ss_pred             ccccc-------ccccccccCCc
Q psy3787         229 LCKVI-------NIPESVYMNRP  244 (263)
Q Consensus       229 ~~~~~-------~l~~~~~~~~~  244 (263)
                      +..+.       ++..+.+.+|+
T Consensus       253 l~~L~~L~l~~n~L~~L~l~~n~  275 (457)
T 3bz5_A          253 LSKLTTLHCIQTDLLEIDLTHNT  275 (457)
T ss_dssp             CTTCCEEECTTCCCSCCCCTTCT
T ss_pred             CCCCCEEeccCCCCCEEECCCCc
Confidence            43333       33445555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.83  E-value=3.3e-20  Score=167.53  Aligned_cols=224  Identities=17%  Similarity=0.181  Sum_probs=161.6

Q ss_pred             CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC---------------------CCCCCCCcEEEecCC
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV---------------------CTDCKNLTHLLLGFN   59 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~---------------------~~~~~~L~~L~l~~n   59 (263)
                      +++|+.|++++|.+..  +|. +..+ +|+.|++++|.+..+|.                     ...+++|++|++++|
T Consensus       281 l~~L~~L~l~~~~l~~--l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n  357 (570)
T 2z63_A          281 LTNVSSFSLVSVTIER--VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN  357 (570)
T ss_dssp             GTTCSEEEEESCEECS--CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSS
T ss_pred             cCcccEEEecCccchh--hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCC
Confidence            4667788888887775  555 5555 77777777776665442                     145677777777777


Q ss_pred             CCCCCc--hhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCcc--ccccCCCcccEEEecCCCCCCcc
Q psy3787          60 KINNME--NDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP--CELSSLFHLKSLFLGGNPIKTVR  135 (263)
Q Consensus        60 ~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~--~~~~~l~~L~~L~l~~n~l~~~~  135 (263)
                      .+....  +..+..+++|++|++++|.++.++..+..+++|++|++++|.+...+  ..+..+++|+.|++++|.+.+..
T Consensus       358 ~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  437 (570)
T 2z63_A          358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  437 (570)
T ss_dssp             CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred             ccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence            776553  45577778888888888888777666777888888888888777553  24777888888888888777754


Q ss_pred             hHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCc-ccccccccccCCcceeccc--ccccc-ChhHHhhcCCcccee
Q psy3787         136 NDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQEST-SEINIDKYKLDRTKTLTLC--KVINI-PESVYMRGMSSQECT  211 (263)
Q Consensus       136 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~l~--~~~~l-~~~~~~~~~~~~~L~  211 (263)
                      +..+.. ...++.++++.+.+               . +.+|..+..+++|++|+++  .++.+ |..+..+.    +|+
T Consensus       438 ~~~~~~-l~~L~~L~l~~n~l---------------~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----~L~  497 (570)
T 2z63_A          438 NGIFNG-LSSLEVLKMAGNSF---------------QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS----SLQ  497 (570)
T ss_dssp             TTTTTT-CTTCCEEECTTCEE---------------GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT----TCC
T ss_pred             hhhhhc-CCcCcEEECcCCcC---------------ccccchhhhhcccCCCEEECCCCccccCChhhhhccc----CCC
Confidence            443332 23566666666653               2 3467778999999999999  77776 44444333    699


Q ss_pred             EEEeccCCcccccCccccccccccccccccCCceEEec
Q psy3787         212 IEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALTY  249 (263)
Q Consensus       212 ~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~~  249 (263)
                      . |++++|+++.+|+..+..+.++..+.+.+||..+..
T Consensus       498 ~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          498 V-LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             E-EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             E-EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence            9 999999999998877777888899999999977654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.83  E-value=1.5e-19  Score=159.45  Aligned_cols=223  Identities=20%  Similarity=0.167  Sum_probs=136.2

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +++|++|++++|+++.  ++ +..+++|++|++++|.++.++ +..+++|++|++++|.+++++   +..+++|++|+++
T Consensus        63 l~~L~~L~Ls~n~l~~--~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~  135 (457)
T 3bz5_A           63 LTGLTKLICTSNNITT--LD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCA  135 (457)
T ss_dssp             CTTCSEEECCSSCCSC--CC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECT
T ss_pred             cCCCCEEEccCCcCCe--Ec-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECC
Confidence            5778888888888887  44 778888888888888888775 777888888888888888763   6678888888888


Q ss_pred             cCcCccccccccCCCCcCEEEccCC-cCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccc
Q psy3787          82 NNKISEVSSNVGDLINLAILDLSDN-ELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQN  160 (263)
Q Consensus        82 ~~~l~~lp~~~~~l~~L~~L~l~~n-~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  160 (263)
                      +|+++.++  ++.+++|+++++++| .+..+  .++.+++|+.|++++|.+++++.  ..  ...++.++++.+.+.-..
T Consensus       136 ~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~l--~~--l~~L~~L~l~~N~l~~~~  207 (457)
T 3bz5_A          136 RNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELDV--SQ--NKLLNRLNCDTNNITKLD  207 (457)
T ss_dssp             TSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCCC--TT--CTTCCEEECCSSCCSCCC
T ss_pred             CCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceecc--cc--CCCCCEEECcCCcCCeec
Confidence            88887664  556666666666666 33333  34555666666666666666541  11  123344444333321100


Q ss_pred             ------cCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccc----
Q psy3787         161 ------VDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLT----  228 (263)
Q Consensus       161 ------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~----  228 (263)
                            +..-..... ....+|  +..+++|+.|+++  .++.+|..  .+    ++|+. +++++|+++.+.-..    
T Consensus       208 l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~--~l----~~L~~-L~l~~n~L~~L~l~~n~~~  277 (457)
T 3bz5_A          208 LNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNPLTELDVS--TL----SKLTT-LHCIQTDLLEIDLTHNTQL  277 (457)
T ss_dssp             CTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCCCT--TC----TTCCE-EECTTCCCSCCCCTTCTTC
T ss_pred             cccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCCcCCCcCHH--HC----CCCCE-EeccCCCCCEEECCCCccC
Confidence                  000000000 033344  7889999999999  77777632  22    23555 555555544332211    


Q ss_pred             ----cccccccccccccCCceEEec
Q psy3787         229 ----LCKVINIPESVYMNRPFALTY  249 (263)
Q Consensus       229 ----~~~~~~l~~~~~~~~~~~~~~  249 (263)
                          ...+.++..+.+.+|+.....
T Consensus       278 ~~~~~~~l~~L~~L~Ls~n~~l~~l  302 (457)
T 3bz5_A          278 IYFQAEGCRKIKELDVTHNTQLYLL  302 (457)
T ss_dssp             CEEECTTCTTCCCCCCTTCTTCCEE
T ss_pred             CcccccccccCCEEECCCCccccee
Confidence                123466777788888754443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.83  E-value=1.7e-19  Score=159.51  Aligned_cols=225  Identities=21%  Similarity=0.314  Sum_probs=126.0

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +++|++|++++|.+..  ++++.++++|++|++++|.+..++.+..+++|++|++++|.+.++++  +..+++|++|+++
T Consensus        67 l~~L~~L~Ls~n~l~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  142 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS  142 (466)
T ss_dssp             CTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEE
T ss_pred             hcCCCEEECCCCccCC--chhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECC
Confidence            5677777887777776  45577777777777777777766667777778888888777777654  6677777777777


Q ss_pred             cCcCccccc--------------------cccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHh
Q psy3787          82 NNKISEVSS--------------------NVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQD  141 (263)
Q Consensus        82 ~~~l~~lp~--------------------~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  141 (263)
                      +|.++.++.                    .+..+++|++|++++|.+..++ .+..+++|+.|++++|.+.++++ ... 
T Consensus       143 ~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~-  219 (466)
T 1o6v_A          143 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGI-  219 (466)
T ss_dssp             EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGG-
T ss_pred             CCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccc-
Confidence            777665542                    1334455666666666655554 35556666666666666665443 111 


Q ss_pred             HHHHhhhhhCCCCcccc-------cccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeE
Q psy3787         142 SKRIISHIKTSRLDYHC-------QNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTI  212 (263)
Q Consensus       142 ~~~~l~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~  212 (263)
                       ...++.++++.+.+.-       ..+..-...... ....++ +..+++|++|+++  .++.++. +..    +++|+.
T Consensus       220 -l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~----l~~L~~  291 (466)
T 1o6v_A          220 -LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQISNISP-LAG----LTALTN  291 (466)
T ss_dssp             -CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTT----CTTCSE
T ss_pred             -cCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCccCcccc-ccC----CCccCe
Confidence             2234444444433200       000000000000 111111 4555666666666  4555443 222    334666


Q ss_pred             EEeccCCcccccCccccccccccccccccCCc
Q psy3787         213 EINIDKYKLDRTKTLTLCKVINIPESVYMNRP  244 (263)
Q Consensus       213 ~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~  244 (263)
                       |++++|+++.+++  ...+.++..+.+.+|+
T Consensus       292 -L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          292 -LELNENQLEDISP--ISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             -EECCSSCCSCCGG--GGGCTTCSEEECCSSC
T ss_pred             -EEcCCCcccCchh--hcCCCCCCEEECcCCc
Confidence             6666666666554  2234555555555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.83  E-value=6.9e-20  Score=163.95  Aligned_cols=67  Identities=9%  Similarity=0.007  Sum_probs=47.0

Q ss_pred             ccccccccccCCcceeccc--cccccCh---hHHhhcCCccceeEEEeccCCcccc-cCccccccccccccccccCCc
Q psy3787         173 SEINIDKYKLDRTKTLTLC--KVINIPE---SVYMRGMSSQECTIEINIDKYKLDR-TKTLTLCKVINIPESVYMNRP  244 (263)
Q Consensus       173 ~~~~~~~~~~~~L~~L~l~--~~~~l~~---~~~~~~~~~~~L~~~L~ls~n~l~~-ip~~~~~~~~~l~~~~~~~~~  244 (263)
                      +..|..+..+++|++|+++  .++.++.   .+..    +++|+. |++++|+++. +|...+..+.++..+.+.+|.
T Consensus       338 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~----l~~L~~-L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~  410 (520)
T 2z7x_B          338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ----MKSLQQ-LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI  410 (520)
T ss_dssp             TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT----CTTCCE-EECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred             hhhhhhhccCCCCCEEEccCCccCccccchHHHhh----CCCCCE-EECCCCcCCcccccchhccCccCCEEECcCCC
Confidence            3466778889999999999  7765443   3333    346998 9999999986 887655555566666666664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.82  E-value=4.8e-20  Score=174.07  Aligned_cols=109  Identities=31%  Similarity=0.475  Sum_probs=64.5

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      ++|+.|++++|.+.......+..+++|+.|++++|.+..++  .+..+++|++|++++|.+.++.+..+..+++|+.|++
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            45666666666665522222666666666666666666432  3556666666666666666665555666666666666


Q ss_pred             ecCcCccccc-cccCCCCcCEEEccCCcCCCc
Q psy3787          81 KNNKISEVSS-NVGDLINLAILDLSDNELTDV  111 (263)
Q Consensus        81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l  111 (263)
                      ++|.++.++. .+..+++|++|++++|.++.+
T Consensus       346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i  377 (844)
T 3j0a_A          346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI  377 (844)
T ss_dssp             CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred             CCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence            6666665533 355566666666666655543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.82  E-value=2.7e-20  Score=169.46  Aligned_cols=234  Identities=17%  Similarity=0.102  Sum_probs=175.7

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +++|+.|++++|.+..  ++.+..+++|+.|++++|.+..+|.+ .+++|+.|++++|......  .+..+++|++|+++
T Consensus       284 l~~L~~L~l~~~~~~~--l~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls  358 (606)
T 3vq2_A          284 LANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLS  358 (606)
T ss_dssp             GTTCSEEEEESCCCCC--CCCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECC
T ss_pred             CCCCCEEEecCccchh--hhhccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch--hhccCCCCCEEECc
Confidence            5789999999999977  66889999999999999999989988 8999999999999554433  36789999999999


Q ss_pred             cCcCccc---cccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcch-HHHHhHHHHhhhhhCCCCccc
Q psy3787          82 NNKISEV---SSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRN-DILQDSKRIISHIKTSRLDYH  157 (263)
Q Consensus        82 ~~~l~~l---p~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~l~~l~~~~~~~~  157 (263)
                      +|.++.+   |..+..+++|++|++++|.+..+|..+..+++|+.|++++|.+.++++ ..+.. ...++.++++.+.+.
T Consensus       359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~  437 (606)
T 3vq2_A          359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDISYTNTK  437 (606)
T ss_dssp             SSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTT-CTTCCEEECTTSCCE
T ss_pred             CCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhc-cccCCEEECcCCCCC
Confidence            9999865   677889999999999999999898889999999999999999988654 32222 346777777666541


Q ss_pred             ccc---------cCCCCCCCcCCcc-cccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccC
Q psy3787         158 CQN---------VDGGGMSSQESTS-EINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTK  225 (263)
Q Consensus       158 ~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip  225 (263)
                      -..         +..-........+ ..|..+..+++|++|+++  .++.+++..+..   +++|+. |++++|+++.++
T Consensus       438 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~L~~-L~Ls~N~l~~~~  513 (606)
T 3vq2_A          438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT---LHRLQL-LNMSHNNLLFLD  513 (606)
T ss_dssp             ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT---CTTCCE-EECCSSCCSCEE
T ss_pred             ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc---cccCCE-EECCCCcCCCcC
Confidence            110         0000000110122 256667888888999888  676665443322   336998 999999988876


Q ss_pred             ccccccccccccccccCCce
Q psy3787         226 TLTLCKVINIPESVYMNRPF  245 (263)
Q Consensus       226 ~~~~~~~~~l~~~~~~~~~~  245 (263)
                      +..+..+.++..+.+.+|+.
T Consensus       514 ~~~~~~l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          514 SSHYNQLYSLSTLDCSFNRI  533 (606)
T ss_dssp             GGGTTTCTTCCEEECTTSCC
T ss_pred             HHHccCCCcCCEEECCCCcC
Confidence            66666667777777777763

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.82  E-value=1.3e-19  Score=171.20  Aligned_cols=136  Identities=28%  Similarity=0.259  Sum_probs=116.5

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCC-CC-c-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-ML-P-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL   78 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l-~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L   78 (263)
                      .++++.|++++|.++......|.++++|++|++++|... .+ | .+..+++|++|++++|.+..+.+..|..+++|++|
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            467999999999998743344999999999999999543 44 3 58999999999999999999988889999999999


Q ss_pred             EeecCcCcc-cccc--ccCCCCcCEEEccCCcCCCc--cccccCCCcccEEEecCCCCCCcchH
Q psy3787          79 NLKNNKISE-VSSN--VGDLINLAILDLSDNELTDV--PCELSSLFHLKSLFLGGNPIKTVRND  137 (263)
Q Consensus        79 ~l~~~~l~~-lp~~--~~~l~~L~~L~l~~n~l~~l--~~~~~~l~~L~~L~l~~n~l~~~~~~  137 (263)
                      ++++|.++. +|..  +..+++|++|++++|.+.++  +..++.+++|+.|++++|.++++.+.
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~  166 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH  166 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence            999999984 5554  88999999999999999875  34689999999999999999885443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=8.2e-20  Score=150.41  Aligned_cols=191  Identities=20%  Similarity=0.273  Sum_probs=153.4

Q ss_pred             eecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcccc
Q psy3787          10 LSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVS   89 (263)
Q Consensus        10 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp   89 (263)
                      +..+.+..  ......+++|+.|++++|.+..++.+..+++|++|++++|.+.+++  .+..+++|++|++++|.++.++
T Consensus        26 l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~  101 (272)
T 3rfs_A           26 LKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLP  101 (272)
T ss_dssp             HTCSCTTS--EECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCC
T ss_pred             hcCccccc--ccccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccC
Confidence            34444443  4447788999999999999999999999999999999999998864  4889999999999999999876


Q ss_pred             cc-ccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCC
Q psy3787          90 SN-VGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMS  167 (263)
Q Consensus        90 ~~-~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  167 (263)
                      .. +..+++|++|++++|.++.++.. ++.+++|+.|++++|.++++++..+... ..++.++++.+.+           
T Consensus       102 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l-----------  169 (272)
T 3rfs_A          102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL-TNLTELDLSYNQL-----------  169 (272)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCC-----------
T ss_pred             hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC-ccCCEEECCCCCc-----------
Confidence            54 68999999999999999988654 7899999999999999999887654332 4677787777763           


Q ss_pred             CcCCcccccc-cccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc-ccC
Q psy3787         168 SQESTSEINI-DKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD-RTK  225 (263)
Q Consensus       168 ~~~~~~~~~~-~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~-~ip  225 (263)
                           ..+++ .+..+++|++|+++  .++.+++..+..   +++|+. |++++|.+. ..|
T Consensus       170 -----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---l~~L~~-L~l~~N~~~~~~~  222 (272)
T 3rfs_A          170 -----QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR---LTSLQY-IWLHDNPWDCTCP  222 (272)
T ss_dssp             -----CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT---CTTCCE-EECCSSCBCCCTT
T ss_pred             -----CccCHHHhcCCccCCEEECCCCcCCccCHHHHhC---CcCCCE-EEccCCCccccCc
Confidence                 23333 36788999999999  788777765433   336998 999999876 444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=3.3e-21  Score=162.26  Aligned_cols=190  Identities=22%  Similarity=0.203  Sum_probs=156.1

Q ss_pred             CCCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         1 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      .+++|+.|++++|.+..  .+++..+++|++|++++|.++.++.   .++|++|++++|.+.++++.   .+++|++|++
T Consensus        56 ~l~~L~~L~Ls~n~l~~--~~~~~~l~~L~~L~Ls~n~l~~l~~---~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l  127 (317)
T 3o53_A           56 PFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLV---GPSIETLHAANNNISRVSCS---RGQGKKNIYL  127 (317)
T ss_dssp             TCTTCCEEECTTSCCEE--EEEETTCTTCCEEECCSSEEEEEEE---CTTCCEEECCSSCCSEEEEC---CCSSCEEEEC
T ss_pred             CCCcCCEEECCCCcCCc--chhhhhcCCCCEEECcCCccccccC---CCCcCEEECCCCccCCcCcc---ccCCCCEEEC
Confidence            36789999999999987  5669999999999999999887663   37899999999999887654   3678999999


Q ss_pred             ecCcCccccc-cccCCCCcCEEEccCCcCCCcc-ccc-cCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccc
Q psy3787          81 KNNKISEVSS-NVGDLINLAILDLSDNELTDVP-CEL-SSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYH  157 (263)
Q Consensus        81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~-~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~  157 (263)
                      ++|+++.++. .+..+++|++|++++|.++.++ ..+ ..+++|+.|++++|.+++++....   ...++.++++.+.  
T Consensus       128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---l~~L~~L~Ls~N~--  202 (317)
T 3o53_A          128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNK--  202 (317)
T ss_dssp             CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSC--
T ss_pred             CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc---cccCCEEECCCCc--
Confidence            9999997754 6788899999999999998763 444 478999999999999998754432   3467788887777  


Q ss_pred             ccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787         158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD  222 (263)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~  222 (263)
                                    ...+++.+..+++|++|+++  .++.+|..+...    ++|+. |++++|+++
T Consensus       203 --------------l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l----~~L~~-L~l~~N~~~  250 (317)
T 3o53_A          203 --------------LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS----QNLEH-FDLRGNGFH  250 (317)
T ss_dssp             --------------CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCC----TTCCE-EECTTCCCB
T ss_pred             --------------CCcchhhhcccCcccEEECcCCcccchhhHhhcC----CCCCE-EEccCCCcc
Confidence                          45677778889999999999  888888765443    35999 999999987

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.81  E-value=2e-19  Score=161.92  Aligned_cols=194  Identities=16%  Similarity=0.216  Sum_probs=142.9

Q ss_pred             CCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCch---hhhhCCCCccEEEeecCcCcccc---ccccCCCCc
Q psy3787          27 RSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMEN---DYFLTLTKLSLLNLKNNKISEVS---SNVGDLINL   98 (263)
Q Consensus        27 ~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~~~l~~lp---~~~~~l~~L   98 (263)
                      ++|+.|++++|.+..+|.  +..+++|++|++++|.+.+..+   ..+..+++|++|++++|+++.++   ..+..+++|
T Consensus       310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L  389 (549)
T 2z81_A          310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL  389 (549)
T ss_dssp             TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred             ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence            467777777777776663  2467788888888888775432   22566778888888888887665   346777888


Q ss_pred             CEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCccccccc
Q psy3787          99 AILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINID  178 (263)
Q Consensus        99 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (263)
                      ++|++++|.++.+|..++.+++|+.|++++|.++.++..+.    ..++.++++.+.+                ...   
T Consensus       390 ~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~----~~L~~L~Ls~N~l----------------~~~---  446 (549)
T 2z81_A          390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP----QTLEVLDVSNNNL----------------DSF---  446 (549)
T ss_dssp             CEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC----TTCSEEECCSSCC----------------SCC---
T ss_pred             CEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc----CCceEEECCCCCh----------------hhh---
Confidence            88888888888888777788888888888888877765432    2456677666653                212   


Q ss_pred             ccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEEec
Q psy3787         179 KYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALTY  249 (263)
Q Consensus       179 ~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~~  249 (263)
                      +..+++|++|+++  +++.+|.. ..    +++|+. |++++|+++.+|+..+..+.++..+.+.+||+.+..
T Consensus       447 ~~~l~~L~~L~Ls~N~l~~ip~~-~~----l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          447 SLFLPRLQELYISRNKLKTLPDA-SL----FPVLLV-MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             CCCCTTCCEEECCSSCCSSCCCG-GG----CTTCCE-EECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred             cccCChhcEEECCCCccCcCCCc-cc----CccCCE-EecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence            2567899999999  88888874 22    346999 999999999988877777888889999999976543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=7.7e-19  Score=142.87  Aligned_cols=129  Identities=27%  Similarity=0.378  Sum_probs=97.7

Q ss_pred             CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      ..++++++++.++.  +|. +.  +.++.|++++|.+..++  .+..+++|++|++++|.+.++++..+..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~~--~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLDS--VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCSS--CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCccc--cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            35677888887776  554 33  57888888888887665  3777888888888888888877777778888888888


Q ss_pred             ecCcCccccc-cccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcch
Q psy3787          81 KNNKISEVSS-NVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRN  136 (263)
Q Consensus        81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~  136 (263)
                      ++|+++.++. .+..+++|++|++++|.++.++.. +..+++|+.|++++|.+++++.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  148 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA  148 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence            8888887654 457778888888888888877654 6778888888888887777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.81  E-value=5.6e-19  Score=160.84  Aligned_cols=212  Identities=20%  Similarity=0.206  Sum_probs=102.6

Q ss_pred             CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC
Q psy3787           4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN   83 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~   83 (263)
                      +|+.|++++|.++.  +|.  .+++|++|++++|.++.+|.  .+++|++|++++|.+..++.    .+++|+.|++++|
T Consensus        62 ~L~~L~L~~N~l~~--lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N  131 (622)
T 3g06_A           62 HITTLVIPDNNLTS--LPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGN  131 (622)
T ss_dssp             TCSEEEECSCCCSC--CCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSS
T ss_pred             CCcEEEecCCCCCC--CCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCC
Confidence            45555555555554  443  34555555555555555554  44555555555555555433    2344555555555


Q ss_pred             cCccccccccCCCCcCEEEccCCcCCCcccccc-----------------CCCcccEEEecCCCCCCcchHHHHhHHHHh
Q psy3787          84 KISEVSSNVGDLINLAILDLSDNELTDVPCELS-----------------SLFHLKSLFLGGNPIKTVRNDILQDSKRII  146 (263)
Q Consensus        84 ~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~-----------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l  146 (263)
                      +++.+|..   +++|++|++++|.++.+|..+.                 .+++|+.|++++|.++++|...     ..+
T Consensus       132 ~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~-----~~L  203 (622)
T 3g06_A          132 QLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLP-----SEL  203 (622)
T ss_dssp             CCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCC-----TTC
T ss_pred             CCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCcc-----chh
Confidence            55544442   2445555555555554432221                 1244555555555555544321     122


Q ss_pred             hhhhCCCCccccc-----ccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCC
Q psy3787         147 SHIKTSRLDYHCQ-----NVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKY  219 (263)
Q Consensus       147 ~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n  219 (263)
                      ..+++..+.+...     .+..-..+.. ....+|   ..+++|+.|+++  .++.+|.   .    +++|+. |++++|
T Consensus       204 ~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~----~~~L~~-L~Ls~N  271 (622)
T 3g06_A          204 YKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGNRLTSLPM---L----PSGLLS-LSVYRN  271 (622)
T ss_dssp             CEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC---C----CTTCCE-EECCSS
T ss_pred             hEEECcCCcccccCCCCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCCCCCcCCc---c----cccCcE-EeCCCC
Confidence            2332222221000     0000000000 012222   334667777777  6666665   1    225777 888888


Q ss_pred             cccccCccccccccccccccccCCceE
Q psy3787         220 KLDRTKTLTLCKVINIPESVYMNRPFA  246 (263)
Q Consensus       220 ~l~~ip~~~~~~~~~l~~~~~~~~~~~  246 (263)
                      +|+.+|.. +..+.++..+.+.+|+..
T Consensus       272 ~L~~lp~~-l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          272 QLTRLPES-LIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CCCSCCGG-GGGSCTTCEEECCSCCCC
T ss_pred             CCCcCCHH-HhhccccCEEEecCCCCC
Confidence            77777653 445566667777777643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=6.5e-20  Score=153.79  Aligned_cols=217  Identities=16%  Similarity=0.152  Sum_probs=160.7

Q ss_pred             CCEEEeecCccCCCCccc---cCCCCCCcEEEecCCCCCCC-c-CC--CCCCCCcEEEecCCCCCCCch----hhhhCCC
Q psy3787           5 LKTLDLSHNKLVSDSLPL---FIDMRSLTELNLSYNQLTML-P-VC--TDCKNLTHLLLGFNKINNMEN----DYFLTLT   73 (263)
Q Consensus         5 L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~l~~n~l~~l-~-~~--~~~~~L~~L~l~~n~~~~~~~----~~~~~l~   73 (263)
                      ++.+.+.++.+....+..   +..+++|++|++++|.+... | .+  ..+++|++|++++|.+....+    ..+..++
T Consensus        66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~  145 (310)
T 4glp_A           66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP  145 (310)
T ss_dssp             CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred             eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence            456666666554322221   33456799999999998843 3 34  788999999999999886432    3445788


Q ss_pred             CccEEEeecCcCcccc-ccccCCCCcCEEEccCCcCCC---ccc--cccCCCcccEEEecCCCCCCcchHHHHh--HHHH
Q psy3787          74 KLSLLNLKNNKISEVS-SNVGDLINLAILDLSDNELTD---VPC--ELSSLFHLKSLFLGGNPIKTVRNDILQD--SKRI  145 (263)
Q Consensus        74 ~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~n~l~~---l~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~~  145 (263)
                      +|++|++++|+++.++ ..++.+++|++|++++|.+..   ++.  .++.+++|++|++++|.++.++......  ....
T Consensus       146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~  225 (310)
T 4glp_A          146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQ  225 (310)
T ss_dssp             CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCC
T ss_pred             CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCC
Confidence            9999999999998665 568899999999999998764   432  2478889999999999998776543322  1356


Q ss_pred             hhhhhCCCCcccccccCCCCCCCcCCccccccccccc---CCcceeccc--cccccChhHHhhcCCccceeEEEeccCCc
Q psy3787         146 ISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKL---DRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYK  220 (263)
Q Consensus       146 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~  220 (263)
                      +++|+++.+.+               .+..|..+..+   ++|++|+++  .++.+|..++  .    +|+. |++++|+
T Consensus       226 L~~L~Ls~N~l---------------~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~----~L~~-L~Ls~N~  283 (310)
T 4glp_A          226 PHSLDLSHNSL---------------RATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--A----KLRV-LDLSSNR  283 (310)
T ss_dssp             CSSEECTTSCC---------------CCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--S----CCSC-EECCSCC
T ss_pred             CCEEECCCCCC---------------CccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--C----CCCE-EECCCCc
Confidence            77888877774               23335555555   799999999  8889988764  2    5999 9999999


Q ss_pred             ccccCccccccccccccccccCCce
Q psy3787         221 LDRTKTLTLCKVINIPESVYMNRPF  245 (263)
Q Consensus       221 l~~ip~~~~~~~~~l~~~~~~~~~~  245 (263)
                      |+.+|..  ..+.++..+.+.+|+.
T Consensus       284 l~~~~~~--~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          284 LNRAPQP--DELPEVDNLTLDGNPF  306 (310)
T ss_dssp             CCSCCCT--TSCCCCSCEECSSTTT
T ss_pred             CCCCchh--hhCCCccEEECcCCCC
Confidence            9988763  3457788888988874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=3e-20  Score=155.83  Aligned_cols=196  Identities=15%  Similarity=0.094  Sum_probs=156.7

Q ss_pred             CCCCEEEeecCccCCCCcccc--CCCCCCcEEEecCCCCCCC-c-----CCCCCCCCcEEEecCCCCCCCchhhhhCCCC
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLF--IDMRSLTELNLSYNQLTML-P-----VCTDCKNLTHLLLGFNKINNMENDYFLTLTK   74 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~l~~l-~-----~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~   74 (263)
                      ++|++|++++|.+.......+  ..+++|++|++++|.+... +     .+..+++|++|++++|.+..+++..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            569999999999987433445  8899999999999999852 2     2356899999999999999999888999999


Q ss_pred             ccEEEeecCcCcc---ccc--cccCCCCcCEEEccCCcCCCcccc----ccCCCcccEEEecCCCCCCc-chHHHHhH-H
Q psy3787          75 LSLLNLKNNKISE---VSS--NVGDLINLAILDLSDNELTDVPCE----LSSLFHLKSLFLGGNPIKTV-RNDILQDS-K  143 (263)
Q Consensus        75 L~~L~l~~~~l~~---lp~--~~~~l~~L~~L~l~~n~l~~l~~~----~~~l~~L~~L~l~~n~l~~~-~~~~~~~~-~  143 (263)
                      |++|++++|++..   ++.  .+..+++|++|++++|.++.++..    ++.+++|++|++++|.++++ |....... .
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            9999999999763   433  246889999999999999877642    57889999999999999996 55544332 3


Q ss_pred             HHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcc
Q psy3787         144 RIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKL  221 (263)
Q Consensus       144 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l  221 (263)
                      ..+++++++.+.+                ..+|..+.  ++|++|+++  +++.+|. +..    +++|+. |++++|++
T Consensus       251 ~~L~~L~Ls~N~l----------------~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~----l~~L~~-L~L~~N~l  306 (310)
T 4glp_A          251 SALNSLNLSFAGL----------------EQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDE----LPEVDN-LTLDGNPF  306 (310)
T ss_dssp             TTCCCEECCSSCC----------------CSCCSCCC--SCCSCEECCSCCCCSCCC-TTS----CCCCSC-EECSSTTT
T ss_pred             CcCCEEECCCCCC----------------Cchhhhhc--CCCCEEECCCCcCCCCch-hhh----CCCccE-EECcCCCC
Confidence            5678888877773                45565554  899999999  8887764 222    447999 99999987


Q ss_pred             c
Q psy3787         222 D  222 (263)
Q Consensus       222 ~  222 (263)
                      +
T Consensus       307 ~  307 (310)
T 4glp_A          307 L  307 (310)
T ss_dssp             S
T ss_pred             C
Confidence            6

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.80  E-value=2.1e-19  Score=148.08  Aligned_cols=175  Identities=21%  Similarity=0.253  Sum_probs=145.5

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      +++|++|++++|++.......+.++++|++|++++|.+..++  .+..+++|++|++++|.+..+++..+..+++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  130 (276)
T 2z62_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (276)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence            678999999999998732234999999999999999999665  488999999999999999998887789999999999


Q ss_pred             eecCcCcc--ccccccCCCCcCEEEccCCcCCCcc-ccccCCCccc----EEEecCCCCCCcchHHHHhHHHHhhhhhCC
Q psy3787          80 LKNNKISE--VSSNVGDLINLAILDLSDNELTDVP-CELSSLFHLK----SLFLGGNPIKTVRNDILQDSKRIISHIKTS  152 (263)
Q Consensus        80 l~~~~l~~--lp~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~  152 (263)
                      +++|.++.  +|..+..+++|++|++++|.++.++ ..+..+.+++    .+++++|.++.++...+...  .++.++++
T Consensus       131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~--~L~~L~L~  208 (276)
T 2z62_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLKELALD  208 (276)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSC--CEEEEECC
T ss_pred             CcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCC--cccEEECC
Confidence            99999986  6888999999999999999999875 3466555555    89999999999887765543  57778887


Q ss_pred             CCcccccccCCCCCCCcCCccccccc-ccccCCcceeccc--ccc
Q psy3787         153 RLDYHCQNVDGGGMSSQESTSEINID-KYKLDRTKTLTLC--KVI  194 (263)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~--~~~  194 (263)
                      .+.+                ..++.. +..+++|+.|+++  .+.
T Consensus       209 ~n~l----------------~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          209 TNQL----------------KSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             SSCC----------------SCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CCce----------------eecCHhHhcccccccEEEccCCccc
Confidence            7763                344444 5789999999999  554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=2.4e-19  Score=152.91  Aligned_cols=205  Identities=17%  Similarity=0.221  Sum_probs=129.4

Q ss_pred             CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCC-CchhhhhCCCCccE-EEe
Q psy3787           6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINN-MENDYFLTLTKLSL-LNL   80 (263)
Q Consensus         6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~-L~l   80 (263)
                      ++++.++++++.  +|. +  .++++.|++++|+|+.+|  .|.++++|++|++++|.+.+ +++.+|.+++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt~--iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVTE--IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCCS--CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCCc--cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            456677777766  554 3  256777777777777766  36777777777777777643 55556667776654 455


Q ss_pred             ecCcCcccc-ccccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecC-CCCCCcchHHHHhHHHHhhhhhCCCCccc
Q psy3787          81 KNNKISEVS-SNVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGG-NPIKTVRNDILQDSKRIISHIKTSRLDYH  157 (263)
Q Consensus        81 ~~~~l~~lp-~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~l~~l~~~~~~~~  157 (263)
                      .+|+++.++ ..+..+++|+++++++|.++.++.. +.....+..+++.+ +.+..++...+......+..++++.+.  
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~--  165 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG--  165 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC--
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc--
Confidence            567777663 4567777777777777777766542 44555666677655 466666655444332234455555555  


Q ss_pred             ccccCCCCCCCcCCcccccccccccCCcceeccc---cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccc
Q psy3787         158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC---KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVIN  234 (263)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~---~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~  234 (263)
                                    ...++.......+|+++++.   .++.+|.+.|....   +|+. ||+++|+|+.+|...+..+.+
T Consensus       166 --------------i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~---~L~~-LdLs~N~l~~lp~~~~~~L~~  227 (350)
T 4ay9_X          166 --------------IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS---GPVI-LDISRTRIHSLPSYGLENLKK  227 (350)
T ss_dssp             --------------CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE---CCSE-EECTTSCCCCCCSSSCTTCCE
T ss_pred             --------------ccCCChhhccccchhHHhhccCCcccCCCHHHhccCc---ccch-hhcCCCCcCccChhhhccchH
Confidence                          34455555555677777775   56777766554333   6777 777777777777765543333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.80  E-value=5.3e-19  Score=159.79  Aligned_cols=103  Identities=26%  Similarity=0.344  Sum_probs=57.6

Q ss_pred             CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      ++++|++++|.+.......+.++++|++|++++|.++.++  .+..+++|++|++++|.++.++..   .+++|++|+++
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls  129 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLS  129 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECC
Confidence            4556666666655522223566666666666666665442  255556666666666666554443   45566666666


Q ss_pred             cCcCcccc--ccccCCCCcCEEEccCCcCC
Q psy3787          82 NNKISEVS--SNVGDLINLAILDLSDNELT  109 (263)
Q Consensus        82 ~~~l~~lp--~~~~~l~~L~~L~l~~n~l~  109 (263)
                      +|+++.++  ..++.+++|++|++++|.+.
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCCccccCchHhhcccCcccEEecCCCccc
Confidence            66665432  45555666666666665554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=5.7e-19  Score=142.54  Aligned_cols=189  Identities=13%  Similarity=0.119  Sum_probs=152.2

Q ss_pred             EEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCc-Cccccc-cccCCCCcCEEEccC-CcC
Q psy3787          32 LNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK-ISEVSS-NVGDLINLAILDLSD-NEL  108 (263)
Q Consensus        32 L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~-l~~lp~-~~~~l~~L~~L~l~~-n~l  108 (263)
                      +++....++.+|.  -..++++|++++|.++++++..|..+++|++|++++|+ ++.++. .+..+++|++|++++ |.+
T Consensus        16 ~~v~c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l   93 (239)
T 2xwt_C           16 FRVTCKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL   93 (239)
T ss_dssp             TEEEECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred             ceeEccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence            3444444777777  34589999999999999998889999999999999997 998876 678999999999998 999


Q ss_pred             CCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhh---hhhCCCC-cccccccCCCCCCCcCCcccccc-ccccc
Q psy3787         109 TDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIIS---HIKTSRL-DYHCQNVDGGGMSSQESTSEINI-DKYKL  182 (263)
Q Consensus       109 ~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~---~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  182 (263)
                      +.++. .+..+++|+.|++++|.++++|. ....  ..++   .++++.+ .                ...++. .+..+
T Consensus        94 ~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l--~~L~~L~~L~l~~N~~----------------l~~i~~~~~~~l  154 (239)
T 2xwt_C           94 TYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKV--YSTDIFFILEITDNPY----------------MTSIPVNAFQGL  154 (239)
T ss_dssp             CEECTTSEECCTTCCEEEEEEECCCSCCC-CTTC--CBCCSEEEEEEESCTT----------------CCEECTTTTTTT
T ss_pred             eEcCHHHhCCCCCCCEEeCCCCCCccccc-cccc--cccccccEEECCCCcc----------------hhhcCcccccch
Confidence            98864 58999999999999999999885 2222  2333   6666555 4                334443 47889


Q ss_pred             CCcc-eeccc--cccccChhHHhhcCCccceeEEEeccCCc-ccccCccccccc-cccccccccCCceE
Q psy3787         183 DRTK-TLTLC--KVINIPESVYMRGMSSQECTIEINIDKYK-LDRTKTLTLCKV-INIPESVYMNRPFA  246 (263)
Q Consensus       183 ~~L~-~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~-l~~ip~~~~~~~-~~l~~~~~~~~~~~  246 (263)
                      ++|+ +|+++  .++.+|...+...    +|+. |++++|+ ++.+|...+..+ .++..+.+.+|+..
T Consensus       155 ~~L~~~L~l~~n~l~~i~~~~~~~~----~L~~-L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          155 CNETLTLKLYNNGFTSVQGYAFNGT----KLDA-VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             BSSEEEEECCSCCCCEECTTTTTTC----EEEE-EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             hcceeEEEcCCCCCcccCHhhcCCC----CCCE-EEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            9999 99998  8899998877664    5999 9999995 999998887777 77888888887743

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=1.1e-20  Score=168.06  Aligned_cols=190  Identities=21%  Similarity=0.188  Sum_probs=159.9

Q ss_pred             CCCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           1 MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         1 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      .+++|+.|++++|.++.  .+++..+++|++|++++|.++.++.   .++|++|++++|.+..+++.   .+++|+.|++
T Consensus        56 ~l~~L~~L~Ls~N~l~~--~~~l~~l~~L~~L~Ls~N~l~~l~~---~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L  127 (487)
T 3oja_A           56 PFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLV---GPSIETLHAANNNISRVSCS---RGQGKKNIYL  127 (487)
T ss_dssp             TCTTCCEEECTTSCCEE--EEECTTCTTCCEEECCSSEEEEEEE---CTTCCEEECCSSCCCCEEEC---CCSSCEEEEC
T ss_pred             CCCCCCEEEeeCCCCCC--CcccccCCCCCEEEecCCcCCCCCC---CCCcCEEECcCCcCCCCCcc---ccCCCCEEEC
Confidence            36789999999999987  5569999999999999999987764   37899999999999988764   4688999999


Q ss_pred             ecCcCccc-cccccCCCCcCEEEccCCcCCCc-ccccc-CCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccc
Q psy3787          81 KNNKISEV-SSNVGDLINLAILDLSDNELTDV-PCELS-SLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYH  157 (263)
Q Consensus        81 ~~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~  157 (263)
                      ++|.++.+ |..++.+++|++|++++|.++.+ |..+. .+++|+.|++++|.+++++....   ...+..|+++.+.  
T Consensus       128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~---l~~L~~L~Ls~N~--  202 (487)
T 3oja_A          128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNK--  202 (487)
T ss_dssp             CSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSC--
T ss_pred             CCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc---CCCCCEEECCCCC--
Confidence            99999966 55788899999999999999964 55565 78999999999999998864332   3467788887777  


Q ss_pred             ccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787         158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD  222 (263)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~  222 (263)
                                    ...+|+.+..+++|+.|+++  .++.+|..+..+.    +|+. +++++|.+.
T Consensus       203 --------------l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~----~L~~-L~l~~N~l~  250 (487)
T 3oja_A          203 --------------LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ----NLEH-FDLRGNGFH  250 (487)
T ss_dssp             --------------CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCT----TCCE-EECTTCCBC
T ss_pred             --------------CCCCCHhHcCCCCccEEEecCCcCcccchhhccCC----CCCE-EEcCCCCCc
Confidence                          45677778999999999999  8888888755444    5999 999999987

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=4.1e-19  Score=147.72  Aligned_cols=176  Identities=20%  Similarity=0.276  Sum_probs=108.8

Q ss_pred             cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEE
Q psy3787          23 FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILD  102 (263)
Q Consensus        23 ~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~  102 (263)
                      +..+++|+.|++++|.+..++.+..+++|++|++++|.++++++  +..+++|++|++++|.++.++. +..+++|++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~  118 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS  118 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred             hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence            44556666666666666666666666666666666666666554  5566666666666666666544 55666666666


Q ss_pred             ccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCccccccccccc
Q psy3787         103 LSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKL  182 (263)
Q Consensus       103 l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (263)
                      +++|.++.++ .+..+++|+.|++++|.+++++ .+..  ...++.|+++.+.                ...+++ +..+
T Consensus       119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~--l~~L~~L~L~~N~----------------l~~~~~-l~~l  177 (291)
T 1h6t_A          119 LEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSR--LTKLDTLSLEDNQ----------------ISDIVP-LAGL  177 (291)
T ss_dssp             CTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGG--CTTCSEEECCSSC----------------CCCCGG-GTTC
T ss_pred             CCCCcCCCCh-hhcCCCCCCEEEccCCcCCcch-hhcc--CCCCCEEEccCCc----------------cccchh-hcCC
Confidence            6666666653 4566666666666666666652 1111  2345555555554                222332 6667


Q ss_pred             CCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccc
Q psy3787         183 DRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLT  228 (263)
Q Consensus       183 ~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~  228 (263)
                      ++|++|+++  .++.++. +..    +++|+. |++++|+++..|...
T Consensus       178 ~~L~~L~L~~N~i~~l~~-l~~----l~~L~~-L~l~~n~i~~~~~~~  219 (291)
T 1h6t_A          178 TKLQNLYLSKNHISDLRA-LAG----LKNLDV-LELFSQECLNKPINH  219 (291)
T ss_dssp             TTCCEEECCSSCCCBCGG-GTT----CTTCSE-EEEEEEEEECCCEEC
T ss_pred             CccCEEECCCCcCCCChh-hcc----CCCCCE-EECcCCcccCCcccc
Confidence            888888888  6777653 333    346888 888888887665543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.79  E-value=3.7e-19  Score=160.11  Aligned_cols=130  Identities=25%  Similarity=0.337  Sum_probs=59.6

Q ss_pred             CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      ++++|++++|+++......+.++++|++|++++|.++.++  .+..+++|++|++++|.+.+.++..+..+++|++|+++
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            3444555555444411112444555555555555444332  24444455555555555544444444444555555555


Q ss_pred             cCcCcc--ccccccCCCCcCEEEccCCc-CCCcc-ccccCCCcccEEEecCCCCCC
Q psy3787          82 NNKISE--VSSNVGDLINLAILDLSDNE-LTDVP-CELSSLFHLKSLFLGGNPIKT  133 (263)
Q Consensus        82 ~~~l~~--lp~~~~~l~~L~~L~l~~n~-l~~l~-~~~~~l~~L~~L~l~~n~l~~  133 (263)
                      +|.++.  +|..++.+++|++|++++|. +..+| ..++.+++|+.|++++|.+++
T Consensus       107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A          107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            554442  23344444455555555444 33333 234444455555555444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=9.2e-19  Score=157.72  Aligned_cols=178  Identities=19%  Similarity=0.228  Sum_probs=148.5

Q ss_pred             CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787           4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN   82 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~   82 (263)
                      +++.|++++|.++.  +|. +  +++|++|++++|.++.+|  ..+++|++|++++|.+++++.  +..  +|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~--lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS--LPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC--CCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCc--cCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence            78999999999987  666 4  388999999999999988  567999999999999999766  544  899999999


Q ss_pred             CcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccC
Q psy3787          83 NKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVD  162 (263)
Q Consensus        83 ~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  162 (263)
                      |+++.+|.   .+++|+.|++++|.++.+|.   .+++|+.|++++|.++++|. + .   ..|..|+++.+.+      
T Consensus       130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l-~---~~L~~L~Ls~N~L------  192 (571)
T 3cvr_A          130 NQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-L-P---ESLEALDVSTNLL------  192 (571)
T ss_dssp             SCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-C-C---TTCCEEECCSSCC------
T ss_pred             CcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-h-h---CCCCEEECcCCCC------
Confidence            99999988   67899999999999999886   67899999999999999987 3 2   4678888877773      


Q ss_pred             CCCCCCcCCcccccccccccCCc-------ceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787         163 GGGMSSQESTSEINIDKYKLDRT-------KTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT  226 (263)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~L-------~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~  226 (263)
                                ..+|. +..  +|       +.|+++  .++.+|..++.+.    +|+. |++++|+++...+
T Consensus       193 ----------~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~----~L~~-L~L~~N~l~~~~p  247 (571)
T 3cvr_A          193 ----------ESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLD----PTCT-IILEDNPLSSRIR  247 (571)
T ss_dssp             ----------SSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSC----TTEE-EECCSSSCCHHHH
T ss_pred             ----------Cchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCC----CCCE-EEeeCCcCCCcCH
Confidence                      34444 433  66       999999  8899999888755    5999 9999999985433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.78  E-value=2e-18  Score=140.45  Aligned_cols=135  Identities=31%  Similarity=0.415  Sum_probs=121.3

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      ++++.|++++|.+.......+.++++|++|++++|.++.++.  +..+++|++|++++|.++.+++..+..+++|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            468999999999998444449999999999999999997763  889999999999999999999888999999999999


Q ss_pred             ecCcCcccccc-ccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchH
Q psy3787          81 KNNKISEVSSN-VGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRND  137 (263)
Q Consensus        81 ~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~  137 (263)
                      ++|+++.+|.. +..+++|++|++++|.++.++. .++.+++|+.|++++|.+++++..
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  173 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG  173 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence            99999988765 6889999999999999998876 589999999999999999987754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.78  E-value=4.3e-18  Score=150.00  Aligned_cols=182  Identities=20%  Similarity=0.254  Sum_probs=120.1

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN   82 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~   82 (263)
                      ++|++|++++|.++.  +|.  ..++|++|++++|.++.++.+.  ++|++|++++|.+++++  .+..+++|++|++++
T Consensus        91 ~~L~~L~l~~n~l~~--lp~--~~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~  162 (454)
T 1jl5_A           91 PHLESLVASCNSLTE--LPE--LPQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDN  162 (454)
T ss_dssp             TTCSEEECCSSCCSS--CCC--CCTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCS
T ss_pred             CCCCEEEccCCcCCc--ccc--ccCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc--ccCCCCCCCEEECCC
Confidence            346666666666665  443  2356777777777766655432  57888888888877765  377788888888888


Q ss_pred             CcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccC
Q psy3787          83 NKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVD  162 (263)
Q Consensus        83 ~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  162 (263)
                      |+++.+|...   .+|++|++++|.++.+| .++.+++|+.+++++|.++++|...     ..++.++++.+.+      
T Consensus       163 N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~-----~~L~~L~l~~n~l------  227 (454)
T 1jl5_A          163 NSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP-----LSLESIVAGNNIL------  227 (454)
T ss_dssp             SCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC-----TTCCEEECCSSCC------
T ss_pred             CcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc-----CcccEEECcCCcC------
Confidence            8887776643   36788888888887777 5778888888888888887766421     2456666655552      


Q ss_pred             CCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787         163 GGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT  226 (263)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~  226 (263)
                                ..+| .+..+++|++|+++  .++.+|...       ++|+. |++++|+++.+|.
T Consensus       228 ----------~~lp-~~~~l~~L~~L~l~~N~l~~l~~~~-------~~L~~-L~l~~N~l~~l~~  274 (454)
T 1jl5_A          228 ----------EELP-ELQNLPFLTTIYADNNLLKTLPDLP-------PSLEA-LNVRDNYLTDLPE  274 (454)
T ss_dssp             ----------SSCC-CCTTCTTCCEEECCSSCCSSCCSCC-------TTCCE-EECCSSCCSCCCC
T ss_pred             ----------Cccc-ccCCCCCCCEEECCCCcCCcccccc-------cccCE-EECCCCcccccCc
Confidence                      3344 36667777777777  566665421       13666 6666666665554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.76  E-value=6.4e-18  Score=153.86  Aligned_cols=189  Identities=22%  Similarity=0.219  Sum_probs=113.9

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +++|+.|++++|+++.  +|.  .+++|++|++++|.++.+|.  .+++|+.|++++|.++.++..    +++|++|+++
T Consensus        80 l~~L~~L~Ls~N~l~~--lp~--~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls  149 (622)
T 3g06_A           80 PPELRTLEVSGNQLTS--LPV--LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVS  149 (622)
T ss_dssp             CTTCCEEEECSCCCSC--CCC--CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC----CTTCCEEECC
T ss_pred             CCCCCEEEcCCCcCCc--CCC--CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC----CCCCCEEECc
Confidence            4678888888888776  554  66777777777777776664  345555555555555554431    2445555555


Q ss_pred             cCcCccccccc-----------------cCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHH----
Q psy3787          82 NNKISEVSSNV-----------------GDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQ----  140 (263)
Q Consensus        82 ~~~l~~lp~~~-----------------~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----  140 (263)
                      +|+++.+|..+                 ..+++|+.|++++|.++.+|..+   ++|+.|++++|.++.+|.....    
T Consensus       150 ~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~---~~L~~L~L~~N~l~~l~~~~~~L~~L  226 (622)
T 3g06_A          150 DNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPALPSGLKEL  226 (622)
T ss_dssp             SSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             CCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCcc---chhhEEECcCCcccccCCCCCCCCEE
Confidence            55544433222                 12366777777777777665432   3445555555555444421100    


Q ss_pred             -----------hHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCc
Q psy3787         141 -----------DSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSS  207 (263)
Q Consensus       141 -----------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~  207 (263)
                                 .....+..++++.+.                ...+|.   .+++|+.|+++  .++.+|..+..+.   
T Consensus       227 ~Ls~N~L~~lp~~l~~L~~L~Ls~N~----------------L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~---  284 (622)
T 3g06_A          227 IVSGNRLTSLPVLPSELKELMVSGNR----------------LTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLS---  284 (622)
T ss_dssp             ECCSSCCSCCCCCCTTCCEEECCSSC----------------CSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSC---
T ss_pred             EccCCccCcCCCCCCcCcEEECCCCC----------------CCcCCc---ccccCcEEeCCCCCCCcCCHHHhhcc---
Confidence                       001233344443333                334444   56899999999  8899998876655   


Q ss_pred             cceeEEEeccCCcccccCcc
Q psy3787         208 QECTIEINIDKYKLDRTKTL  227 (263)
Q Consensus       208 ~~L~~~L~ls~n~l~~ip~~  227 (263)
                       +|+. |++++|+++..+..
T Consensus       285 -~L~~-L~L~~N~l~~~~~~  302 (622)
T 3g06_A          285 -SETT-VNLEGNPLSERTLQ  302 (622)
T ss_dssp             -TTCE-EECCSCCCCHHHHH
T ss_pred             -ccCE-EEecCCCCCCcCHH
Confidence             5999 99999999854443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.76  E-value=1.1e-17  Score=147.36  Aligned_cols=124  Identities=24%  Similarity=0.368  Sum_probs=90.5

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN   82 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~   82 (263)
                      ++|++|++++|++..  +|.+.++++|++|++++|.++.+|..  ..+|++|++++|.+.+++  .+..+++|++|++++
T Consensus       131 ~~L~~L~L~~n~l~~--lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADN  204 (454)
T ss_dssp             TTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCS
T ss_pred             CCCCEEECcCCCCCC--CcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc--cccCCCCCCEEECCC
Confidence            478889999998887  66788888899999998888877743  347888888888887765  267777788888777


Q ss_pred             CcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcch
Q psy3787          83 NKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRN  136 (263)
Q Consensus        83 ~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~  136 (263)
                      |.++.+|...   .+|+++++++|.++.+| .++.+++|+.+++++|.++++|.
T Consensus       205 N~l~~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~  254 (454)
T 1jl5_A          205 NSLKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPD  254 (454)
T ss_dssp             SCCSSCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCS
T ss_pred             CcCCcCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcccc
Confidence            7777665532   35667777777666666 36666666666666666666553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=6.2e-19  Score=144.52  Aligned_cols=124  Identities=23%  Similarity=0.296  Sum_probs=106.6

Q ss_pred             CCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCc
Q psy3787           5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK   84 (263)
Q Consensus         5 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~   84 (263)
                      +..++++++.++.  ++.+..+++|+.|++++|.++.++.+..+++|++|++++|.+.++++  +..+++|++|++++|+
T Consensus        21 l~~l~l~~~~i~~--~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           21 AVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHHHTCSCTTS--EECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred             HHHHHhcCCCccc--ccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence            4455677787776  66788899999999999999988888889999999999999998876  8889999999999999


Q ss_pred             CccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcc
Q psy3787          85 ISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVR  135 (263)
Q Consensus        85 l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~  135 (263)
                      ++.+|....  .+|++|++++|.++.++ .++.+++|+.|++++|.+++++
T Consensus        97 l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~  144 (263)
T 1xeu_A           97 LKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV  144 (263)
T ss_dssp             CSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG
T ss_pred             cCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh
Confidence            998876544  88999999999999876 5889999999999999988874

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=5.3e-18  Score=140.95  Aligned_cols=171  Identities=26%  Similarity=0.338  Sum_probs=145.8

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +++|+.|++++|.+..  ++.+..+++|+.|++++|.++.++.+..+++|++|++++|.+..++.  +..+++|++|+++
T Consensus        45 l~~L~~L~l~~~~i~~--~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~  120 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLE  120 (291)
T ss_dssp             HHTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECT
T ss_pred             cCcccEEEccCCCccc--ChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECC
Confidence            4578999999999987  67799999999999999999988888999999999999999988654  8899999999999


Q ss_pred             cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccccc
Q psy3787          82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV  161 (263)
Q Consensus        82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  161 (263)
                      +|+++.++ .+..+++|++|++++|.++.+ ..++.+++|+.|++++|.++++++ ...  ...++.++++.+.+     
T Consensus       121 ~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~--l~~L~~L~L~~N~i-----  190 (291)
T 1h6t_A          121 HNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAG--LTKLQNLYLSKNHI-----  190 (291)
T ss_dssp             TSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTT--CTTCCEEECCSSCC-----
T ss_pred             CCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcC--CCccCEEECCCCcC-----
Confidence            99999875 577899999999999999988 478999999999999999999876 222  35677888877763     


Q ss_pred             CCCCCCCcCCcccccccccccCCcceeccc--cccccCh
Q psy3787         162 DGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPE  198 (263)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~  198 (263)
                                 ..++ .+..+++|+.|+++  .++..|.
T Consensus       191 -----------~~l~-~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          191 -----------SDLR-ALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             -----------CBCG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred             -----------CCCh-hhccCCCCCEEECcCCcccCCcc
Confidence                       3333 48889999999999  6666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=3.8e-18  Score=155.01  Aligned_cols=180  Identities=20%  Similarity=0.260  Sum_probs=115.7

Q ss_pred             ccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcC
Q psy3787          20 LPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLA   99 (263)
Q Consensus        20 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~   99 (263)
                      +..+..+++|+.|++++|.+..++.+..+++|+.|++++|.+..+++  +..+++|+.|++++|.++.+| .+..+++|+
T Consensus        36 ~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~  112 (605)
T 1m9s_A           36 AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK  112 (605)
T ss_dssp             EECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred             ccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCC
Confidence            33355566677777777777766666667777777777777766655  566777777777777776655 456667777


Q ss_pred             EEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccc
Q psy3787         100 ILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK  179 (263)
Q Consensus       100 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (263)
                      .|++++|.+..++ .+..+++|+.|++++|.++.++ .+..  ...|+.|+++.+.+                ..+++ +
T Consensus       113 ~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~--l~~L~~L~Ls~N~l----------------~~~~~-l  171 (605)
T 1m9s_A          113 SLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSR--LTKLDTLSLEDNQI----------------SDIVP-L  171 (605)
T ss_dssp             EEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-GGGS--CTTCSEEECCSSCC----------------CCCGG-G
T ss_pred             EEEecCCCCCCCc-cccCCCccCEEECCCCccCCch-hhcc--cCCCCEEECcCCcC----------------CCchh-h
Confidence            7777777776654 4666677777777777776652 1111  23455566655552                22333 6


Q ss_pred             cccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccc
Q psy3787         180 YKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTL  229 (263)
Q Consensus       180 ~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~  229 (263)
                      ..+++|+.|+|+  .+..++ .+..    +++|+. |++++|++...|....
T Consensus       172 ~~l~~L~~L~Ls~N~i~~l~-~l~~----l~~L~~-L~L~~N~l~~~p~~~~  217 (605)
T 1m9s_A          172 AGLTKLQNLYLSKNHISDLR-ALAG----LKNLDV-LELFSQECLNKPINHQ  217 (605)
T ss_dssp             TTCTTCCEEECCSSCCCBCG-GGTT----CTTCSE-EECCSEEEECCCCCCC
T ss_pred             ccCCCCCEEECcCCCCCCCh-HHcc----CCCCCE-EEccCCcCcCCccccc
Confidence            677888888888  666664 3333    345888 8888888876665443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.75  E-value=9.7e-18  Score=152.84  Aligned_cols=138  Identities=25%  Similarity=0.314  Sum_probs=121.3

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      +++++|++++|+++.....+|.++++|++|++++|.|+.++  .|.++++|++|++++|+++++++.+|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            36899999999999832223999999999999999999876  4899999999999999999999998999999999999


Q ss_pred             ecCcCccccc-cccCCCCcCEEEccCCcCCC--ccccccCCCcccEEEecCCCCCCcchHHHH
Q psy3787          81 KNNKISEVSS-NVGDLINLAILDLSDNELTD--VPCELSSLFHLKSLFLGGNPIKTVRNDILQ  140 (263)
Q Consensus        81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  140 (263)
                      ++|+++.++. .++.+++|++|++++|.++.  +|..++.+++|++|++++|.++++++..+.
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~  194 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  194 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence            9999998876 48899999999999999985  467789999999999999999997765443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=1.5e-17  Score=142.40  Aligned_cols=157  Identities=29%  Similarity=0.321  Sum_probs=134.1

Q ss_pred             CCCCEEEeecCccCCCCccccC-CCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFI-DMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      ..++.|++++|+++......+. ++++|+.|++++|.++.++  .|..+++|++|++++|.+..+++..|..+++|+.|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            3578999999999883222266 8999999999999999776  489999999999999999999988899999999999


Q ss_pred             eecCcCccc-cccccCCCCcCEEEccCCcCCCccccc----cCCCcccEEEecCCCCCCcchHHHHhH-HHHhhhhhCCC
Q psy3787          80 LKNNKISEV-SSNVGDLINLAILDLSDNELTDVPCEL----SSLFHLKSLFLGGNPIKTVRNDILQDS-KRIISHIKTSR  153 (263)
Q Consensus        80 l~~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~l~~l~~~~  153 (263)
                      +++|+++.+ |..+..+.+|++|++++|.++.+|..+    ..+++|+.|++++|.++.++...+... ...+..+++.+
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence            999999977 567899999999999999999998764    679999999999999999997766554 22357788989


Q ss_pred             Cccccc
Q psy3787         154 LDYHCQ  159 (263)
Q Consensus       154 ~~~~~~  159 (263)
                      +++.|.
T Consensus       199 N~~~C~  204 (361)
T 2xot_A          199 NPLECD  204 (361)
T ss_dssp             SCEECC
T ss_pred             CCccCC
Confidence            998775

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1.3e-17  Score=130.76  Aligned_cols=109  Identities=23%  Similarity=0.291  Sum_probs=63.2

Q ss_pred             CCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcc-ccccccCCCCcCEEE
Q psy3787          24 IDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISE-VSSNVGDLINLAILD  102 (263)
Q Consensus        24 ~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~  102 (263)
                      ..+++|+.|++++|.+..++.+..+++|++|++++|.+...+  .+..+++|++|++++|+++. .+..+..+++|++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            345556666666666665555555666666666666554432  25556666666666666653 455555666666666


Q ss_pred             ccCCcCCC-ccccccCCCcccEEEecCCC-CCCc
Q psy3787         103 LSDNELTD-VPCELSSLFHLKSLFLGGNP-IKTV  134 (263)
Q Consensus       103 l~~n~l~~-l~~~~~~l~~L~~L~l~~n~-l~~~  134 (263)
                      +++|.++. .+..++.+++|+.|++++|. ++.+
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~  152 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI  152 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc
Confidence            66666653 34445666666666666664 4444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=1.2e-17  Score=142.89  Aligned_cols=173  Identities=24%  Similarity=0.338  Sum_probs=102.2

Q ss_pred             CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC--CC-CCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV--CT-DCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~--~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +.+++++++++.  +|. +  .+.++.|++++|.++.++.  +. .+++|++|++++|.+..+++..|..+++|++|+++
T Consensus        21 ~~l~c~~~~l~~--iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPN--VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSS--CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCc--cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            356666666655  443 2  2346666777776665542  44 56666677777776666666666666667777777


Q ss_pred             cCcCccccc-cccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccc
Q psy3787          82 NNKISEVSS-NVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQ  159 (263)
Q Consensus        82 ~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~  159 (263)
                      +|+++.++. .+..+.+|++|++++|.++.+ +..+..+++|+.|++++|.++.+|...+..                  
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~------------------  158 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD------------------  158 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-------------------
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC------------------
Confidence            766665544 356666667777766666655 344666666667766666666655432110                  


Q ss_pred             ccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcc
Q psy3787         160 NVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKL  221 (263)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l  221 (263)
                                         +..+++|+.|+++  .++.+|...+.... ...++. |++++|.+
T Consensus       159 -------------------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~-~~~l~~-l~l~~N~~  201 (361)
T 2xot_A          159 -------------------GNKLPKLMLLDLSSNKLKKLPLTDLQKLP-AWVKNG-LYLHNNPL  201 (361)
T ss_dssp             ----------------------CTTCCEEECCSSCCCCCCHHHHHHSC-HHHHTT-EECCSSCE
T ss_pred             -------------------cccCCcCCEEECCCCCCCccCHHHhhhcc-Hhhcce-EEecCCCc
Confidence                               1335667777777  66777655444332 001366 77777744

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=3.2e-17  Score=131.50  Aligned_cols=131  Identities=31%  Similarity=0.410  Sum_probs=87.0

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      ++|+.|++++|.+.......+.++++|+.|++++|.+..++.  +..+++|++|++++|.++.+++..|..+++|++|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            356677777777666222226667777777777777766652  566677777777777777666666666777777777


Q ss_pred             ecCcCccccccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCC
Q psy3787          81 KNNKISEVSSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKT  133 (263)
Q Consensus        81 ~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~  133 (263)
                      ++|+++.+|..+..+++|++|++++|.++.++. .+..+++|+.+++++|++..
T Consensus       120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            777777776666666777777777777766653 36666677777777776654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.73  E-value=5.4e-17  Score=128.10  Aligned_cols=145  Identities=29%  Similarity=0.357  Sum_probs=86.4

Q ss_pred             EEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCc
Q psy3787           7 TLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK   84 (263)
Q Consensus         7 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~   84 (263)
                      .++++++.++.  +|. .-.+++++|++++|.++.++.  +..+++|++|++++|.+..+++..+..+++|++|++++|+
T Consensus        11 ~v~c~~~~l~~--~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           11 TVECYSQGRTS--VPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EEECCSSCCSS--CCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCccC--CCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            45555555554  332 113466666777766665553  5566666677777666666666656666667777777666


Q ss_pred             Ccccccc-ccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCc
Q psy3787          85 ISEVSSN-VGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLD  155 (263)
Q Consensus        85 l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~  155 (263)
                      ++.++.. +..+++|++|++++|.++.++.. +..+++|+.|++++|.+++++...+... ..++.+++.++.
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~l~~N~  159 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL-TSLQYIWLHDNP  159 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSCC
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC-CCccEEEecCCC
Confidence            6655543 45666677777766666665443 5666667777777666666655433221 344555554444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.73  E-value=1.7e-17  Score=126.55  Aligned_cols=136  Identities=22%  Similarity=0.150  Sum_probs=119.8

Q ss_pred             CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      .++|++|++++|.+....+|. +..+++|++|++++|.++.++.+..+++|++|++++|.+....+..+..+++|++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            367999999999998323666 7899999999999999998877889999999999999999866776777999999999


Q ss_pred             ecCcCcccc--ccccCCCCcCEEEccCCcCCCccc----cccCCCcccEEEecCCCCCCcchH
Q psy3787          81 KNNKISEVS--SNVGDLINLAILDLSDNELTDVPC----ELSSLFHLKSLFLGGNPIKTVRND  137 (263)
Q Consensus        81 ~~~~l~~lp--~~~~~l~~L~~L~l~~n~l~~l~~----~~~~l~~L~~L~l~~n~l~~~~~~  137 (263)
                      ++|.++.+|  ..+..+++|++|++++|.++.+|.    .+..+++|+.|++++|.+.++|..
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            999999876  678899999999999999998876    688999999999999998887743

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.72  E-value=4.9e-17  Score=128.36  Aligned_cols=131  Identities=32%  Similarity=0.415  Sum_probs=100.2

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      +++++|++++|++.......+.++++|++|++++|.++.++.  +..+++|++|++++|.++.+++..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            467888888888876222227788888888888888887663  677788888888888888777777777888888888


Q ss_pred             ecCcCcccccc-ccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCC
Q psy3787          81 KNNKISEVSSN-VGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKT  133 (263)
Q Consensus        81 ~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~  133 (263)
                      ++|+++.++.. +..+++|++|++++|.++.++.. +..+++|+.+++++|++..
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            88888877654 57778888888888888877654 6778888888888887665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.72  E-value=1.5e-17  Score=141.76  Aligned_cols=197  Identities=17%  Similarity=0.237  Sum_probs=151.8

Q ss_pred             CCCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCC-Cc--CCCCCCCCcE-EEecCCCCCCCchhhhhCCCCcc
Q psy3787           3 SHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTM-LP--VCTDCKNLTH-LLLGFNKINNMENDYFLTLTKLS   76 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-l~--~~~~~~~L~~-L~l~~n~~~~~~~~~~~~l~~L~   76 (263)
                      +++++|++++|+++.  +|+  |.++++|++|++++|.+.. ++  .|.+++++.. +.+..|++..+++.+|..+++|+
T Consensus        30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence            478999999999998  665  9999999999999999854 55  4788888776 56777999999999999999999


Q ss_pred             EEEeecCcCcccccc-ccCCCCcCEEEccC-CcCCCccc-cccCCC-cccEEEecCCCCCCcchHHHHhHHHHhhhhhCC
Q psy3787          77 LLNLKNNKISEVSSN-VGDLINLAILDLSD-NELTDVPC-ELSSLF-HLKSLFLGGNPIKTVRNDILQDSKRIISHIKTS  152 (263)
Q Consensus        77 ~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~-n~l~~l~~-~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~  152 (263)
                      ++++++|+++.+|.. +.....+..+++.+ +.+..++. .+..+. .++.|++++|.+++++...+...  .+..+.+.
T Consensus       108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~--~L~~l~l~  185 (350)
T 4ay9_X          108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT--QLDELNLS  185 (350)
T ss_dssp             EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTE--EEEEEECT
T ss_pred             cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcccc--chhHHhhc
Confidence            999999999988664 45666788888876 57777764 355554 68899999999999998877654  45555554


Q ss_pred             C-CcccccccCCCCCCCcCCccccccc-ccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccC-CcccccCc
Q psy3787         153 R-LDYHCQNVDGGGMSSQESTSEINID-KYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDK-YKLDRTKT  226 (263)
Q Consensus       153 ~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~-n~l~~ip~  226 (263)
                      . +.                .+.+|.. +..+++|++|+++  +++.+|...+.      .|+. |.+.+ +.++.+|+
T Consensus       186 ~~n~----------------l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~------~L~~-L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          186 DNNN----------------LEELPNDVFHGASGPVILDISRTRIHSLPSYGLE------NLKK-LRARSTYNLKKLPT  241 (350)
T ss_dssp             TCTT----------------CCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT------TCCE-EECTTCTTCCCCCC
T ss_pred             cCCc----------------ccCCCHHHhccCcccchhhcCCCCcCccChhhhc------cchH-hhhccCCCcCcCCC
Confidence            3 22                4455544 6889999999999  88999976543      3555 55544 34777775

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=6.3e-17  Score=129.79  Aligned_cols=128  Identities=30%  Similarity=0.426  Sum_probs=105.7

Q ss_pred             CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787           6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN   82 (263)
Q Consensus         6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~   82 (263)
                      +.++.+++.++.  +|. +  .++|+.|++++|.++.++  .+..+++|++|++++|.+..+++..|..+++|+.|++++
T Consensus        22 ~~v~c~~~~l~~--ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           22 TTVDCRSKRHAS--VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEeEccCCCcCc--cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            567788887776  665 3  278899999999988764  378888999999999999888888788888999999999


Q ss_pred             CcCcccccc-ccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchH
Q psy3787          83 NKISEVSSN-VGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRND  137 (263)
Q Consensus        83 ~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~  137 (263)
                      |+++.++.. +..+++|++|++++|.++.+|..+..+++|+.|++++|.++.++..
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~  153 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHG  153 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHH
Confidence            998877654 5788889999999999988888888888999999999988887653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.71  E-value=2.1e-18  Score=147.64  Aligned_cols=210  Identities=22%  Similarity=0.189  Sum_probs=123.3

Q ss_pred             CCCCEEEeecCccCCCCc----cccCCCC-CCcEEEecCCCCCCCc--CCCCC-----CCCcEEEecCCCCCCCchhhh-
Q psy3787           3 SHLKTLDLSHNKLVSDSL----PLFIDMR-SLTELNLSYNQLTMLP--VCTDC-----KNLTHLLLGFNKINNMENDYF-   69 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~l~~n~l~~l~--~~~~~-----~~L~~L~l~~n~~~~~~~~~~-   69 (263)
                      ++|++|++++|.++....    ..+.+++ +|++|++++|.++...  .+..+     ++|++|++++|.++...+..+ 
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            358888888888877443    3367777 7888888888877543  23222     778888888888776655533 


Q ss_pred             ---hCC-CCccEEEeecCcCccccc-c----ccC-CCCcCEEEccCCcCCC-----ccccccCCC-cccEEEecCCCCCC
Q psy3787          70 ---LTL-TKLSLLNLKNNKISEVSS-N----VGD-LINLAILDLSDNELTD-----VPCELSSLF-HLKSLFLGGNPIKT  133 (263)
Q Consensus        70 ---~~l-~~L~~L~l~~~~l~~lp~-~----~~~-l~~L~~L~l~~n~l~~-----l~~~~~~l~-~L~~L~l~~n~l~~  133 (263)
                         ... ++|++|++++|+++..+. .    +.. ..+|++|++++|.++.     ++..+...+ +|+.|++++|.++.
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence               333 678888888888775432 1    333 3578888888887772     334445554 78888888887777


Q ss_pred             cchHHHHhH---H-HHhhhhhCCCCcccccccCCCCCCCcCCcccccccccc-cCCcceeccc--cccccCh-hHHhhcC
Q psy3787         134 VRNDILQDS---K-RIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYK-LDRTKTLTLC--KVINIPE-SVYMRGM  205 (263)
Q Consensus       134 ~~~~~~~~~---~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~--~~~~l~~-~~~~~~~  205 (263)
                      .....+...   . ..++.++++.+.+.     +.+      ...++..+.. .++|++|+++  .++..+. .+.....
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~-----~~~------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~  250 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLG-----LKS------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD  250 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGG-----GSC------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCC-----hhH------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh
Confidence            554433322   1 35666666655531     111      1123333433 2366666666  5544433 2222222


Q ss_pred             CccceeEEEeccCCccccc
Q psy3787         206 SSQECTIEINIDKYKLDRT  224 (263)
Q Consensus       206 ~~~~L~~~L~ls~n~l~~i  224 (263)
                      .+++|+. |++++|.+..+
T Consensus       251 ~l~~L~~-L~L~~n~l~~i  268 (362)
T 3goz_A          251 SLKHLQT-VYLDYDIVKNM  268 (362)
T ss_dssp             TTTTCSE-EEEEHHHHTTC
T ss_pred             cCCCccE-EEeccCCcccc
Confidence            3445665 66666654433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.71  E-value=5.9e-18  Score=143.08  Aligned_cols=218  Identities=15%  Similarity=0.152  Sum_probs=153.5

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCC--Cc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTM--LP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      ++++.+++++|.+.. ..+.+..+++|++|++++|.++.  ++ .+..+++|++|++++|.++...+..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQ-PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECS-CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccc-cchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            568888999988887 23447788999999999998773  44 367788999999999988866667788899999999


Q ss_pred             eecC-cCc--cccccccCCCCcCEEEccCC-cCCC--ccccccCCC-cccEEEecCCC--CCC--cchHHHHhHHHHhhh
Q psy3787          80 LKNN-KIS--EVSSNVGDLINLAILDLSDN-ELTD--VPCELSSLF-HLKSLFLGGNP--IKT--VRNDILQDSKRIISH  148 (263)
Q Consensus        80 l~~~-~l~--~lp~~~~~l~~L~~L~l~~n-~l~~--l~~~~~~l~-~L~~L~l~~n~--l~~--~~~~~~~~~~~~l~~  148 (263)
                      +++| .++  .++..+..+++|++|++++| .++.  ++..+..++ +|+.|++++|.  ++.  ++.....  ...++.
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~--~~~L~~  226 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR--CPNLVH  226 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH--CTTCSE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh--CCCCCE
Confidence            9999 677  36776778889999999999 8874  566688888 99999999984  432  3332212  345666


Q ss_pred             hhCCCCc-ccccccCCCCCCCcCCcccccccccccCCcceeccc-cccccChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787         149 IKTSRLD-YHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT  226 (263)
Q Consensus       149 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~  226 (263)
                      ++++.+. +               ....+..+..+++|++|+++ +-...+..+... .++++|+. |++++|    ++.
T Consensus       227 L~l~~~~~l---------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~-L~l~~~----i~~  285 (336)
T 2ast_B          227 LDLSDSVML---------------KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKT-LQVFGI----VPD  285 (336)
T ss_dssp             EECTTCTTC---------------CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCE-EECTTS----SCT
T ss_pred             EeCCCCCcC---------------CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCE-EeccCc----cCH
Confidence            7766555 2               23455567888999999999 433333322122 22557998 999998    444


Q ss_pred             cccccc-cccccccccCCc
Q psy3787         227 LTLCKV-INIPESVYMNRP  244 (263)
Q Consensus       227 ~~~~~~-~~l~~~~~~~~~  244 (263)
                      .....+ ..++.+.+.+|.
T Consensus       286 ~~~~~l~~~l~~L~l~~n~  304 (336)
T 2ast_B          286 GTLQLLKEALPHLQINCSH  304 (336)
T ss_dssp             TCHHHHHHHSTTSEESCCC
T ss_pred             HHHHHHHhhCcceEEeccc
Confidence            333222 235555555544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.71  E-value=3.9e-17  Score=148.82  Aligned_cols=144  Identities=23%  Similarity=0.266  Sum_probs=116.8

Q ss_pred             EEEeecCccCCCCccccCCC-CCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC
Q psy3787           7 TLDLSHNKLVSDSLPLFIDM-RSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN   83 (263)
Q Consensus         7 ~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~   83 (263)
                      +.+.++.+++.  +|+  ++ +.++.|++++|.|+.++  +|..+++|++|++++|.++++++++|+++++|++|++++|
T Consensus        35 ~~~c~~~~l~~--vP~--~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           35 TYQCMELNFYK--IPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN  110 (635)
T ss_dssp             EEECTTSCCSS--CCS--SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             EEECCCCCcCc--cCC--CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence            34555555665  664  23 47999999999999876  4899999999999999999999999999999999999999


Q ss_pred             cCccccc-cccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcc--hHHHHhHHHHhhhhhCCCCcc
Q psy3787          84 KISEVSS-NVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVR--NDILQDSKRIISHIKTSRLDY  156 (263)
Q Consensus        84 ~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~l~~l~~~~~~~  156 (263)
                      +++.+|. .+..+++|++|++++|.++.++. .++.+++|+.|++++|.++.++  .....  ...+++++++.+.+
T Consensus       111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~--l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN--LTNLEHLDLSSNKI  185 (635)
T ss_dssp             CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG--CTTCCEEECCSSCC
T ss_pred             cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhcc--chhhhhhcccCccc
Confidence            9998875 57899999999999999998865 4899999999999999998753  22222  24667777766653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.71  E-value=9.3e-17  Score=144.70  Aligned_cols=178  Identities=16%  Similarity=0.184  Sum_probs=145.2

Q ss_pred             CCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCC
Q psy3787          28 SLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDN  106 (263)
Q Consensus        28 ~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n  106 (263)
                      +++.|++++|.++.+|. +  .++|++|++++|.++.++    ..+++|++|++++|+++.+|. +..  +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence            89999999999998885 4  378999999999999877    347899999999999999988 655  8999999999


Q ss_pred             cCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcc
Q psy3787         107 ELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTK  186 (263)
Q Consensus       107 ~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  186 (263)
                      .++.+|.   .+++|+.|++++|.++++|.     ....++.|+++.+.                ...+|. +.  ++|+
T Consensus       131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~----------------L~~lp~-l~--~~L~  183 (571)
T 3cvr_A          131 QLTMLPE---LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQ----------------LTFLPE-LP--ESLE  183 (571)
T ss_dssp             CCSCCCC---CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSC----------------CSCCCC-CC--TTCC
T ss_pred             cCCCCCC---cCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCC----------------CCCcch-hh--CCCC
Confidence            9999987   68899999999999999886     22467788887777                344555 54  8999


Q ss_pred             eeccc--cccccChhHHhhcC---CccceeEEEeccCCcccccCccccccccccccccccCCceE
Q psy3787         187 TLTLC--KVINIPESVYMRGM---SSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFA  246 (263)
Q Consensus       187 ~L~l~--~~~~l~~~~~~~~~---~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~  246 (263)
                      .|+++  .++.+|. +..  .   ....|+. |++++|+|+.+|..... +.++..+.+.+|+..
T Consensus       184 ~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~-L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          184 ALDVSTNLLESLPA-VPV--RNHHSEETEIF-FRCRENRITHIPENILS-LDPTCTIILEDNPLS  243 (571)
T ss_dssp             EEECCSSCCSSCCC-CC----------CCEE-EECCSSCCCCCCGGGGG-SCTTEEEECCSSSCC
T ss_pred             EEECcCCCCCchhh-HHH--hhhcccccceE-EecCCCcceecCHHHhc-CCCCCEEEeeCCcCC
Confidence            99999  8888887 332  2   0012299 99999999999985543 777888888888854

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=2.1e-18  Score=148.85  Aligned_cols=230  Identities=16%  Similarity=0.130  Sum_probs=151.9

Q ss_pred             CCCCCEEEeecCccCCCCccc----cCCCCCCcEEEecCCCCCCC----c-C-------CCCCCCCcEEEecCCCCCC--
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL----FIDMRSLTELNLSYNQLTML----P-V-------CTDCKNLTHLLLGFNKINN--   63 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~l~~l----~-~-------~~~~~~L~~L~l~~n~~~~--   63 (263)
                      +++|+.|++++|.+.......    +..+++|++|++++|.+..+    | .       +..+++|++|++++|.++.  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            567899999999887632222    66889999999999866633    2 1       3678899999999999886  


Q ss_pred             --CchhhhhCCCCccEEEeecCcCcc-----ccccccCC---------CCcCEEEccCCcCC--Ccc---ccccCCCccc
Q psy3787          64 --MENDYFLTLTKLSLLNLKNNKISE-----VSSNVGDL---------INLAILDLSDNELT--DVP---CELSSLFHLK  122 (263)
Q Consensus        64 --~~~~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~l---------~~L~~L~l~~n~l~--~l~---~~~~~l~~L~  122 (263)
                        ..+..+..+++|++|++++|.++.     ++..+..+         ++|++|++++|.++  .++   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              345567888999999999998873     23333333         78999999999887  344   4567788999


Q ss_pred             EEEecCCCCCCcchHH-HH-h-H-HHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--ccccc
Q psy3787         123 SLFLGGNPIKTVRNDI-LQ-D-S-KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINI  196 (263)
Q Consensus       123 ~L~l~~n~l~~~~~~~-~~-~-~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l  196 (263)
                      .|++++|.++...... .. . . ...++.|+++.+.+.     +.+      ...++..+..+++|++|+++  .++..
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~-----~~g------~~~l~~~l~~~~~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT-----HLG------SSALAIALKSWPNLRELGLNDCLLSAR  259 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH-----HHH------HHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC-----cHH------HHHHHHHHccCCCcCEEECCCCCCchh
Confidence            9999999887321111 11 1 1 345666666655520     000      14455667777888888888  55433


Q ss_pred             -----ChhHHhhcCCccceeEEEeccCCcccc-----cCccccccccccccccccCCce
Q psy3787         197 -----PESVYMRGMSSQECTIEINIDKYKLDR-----TKTLTLCKVINIPESVYMNRPF  245 (263)
Q Consensus       197 -----~~~~~~~~~~~~~L~~~L~ls~n~l~~-----ip~~~~~~~~~l~~~~~~~~~~  245 (263)
                           +..+..  ..+++|+. |++++|.++.     +|......+.++..+.+.+|+.
T Consensus       260 ~~~~l~~~l~~--~~~~~L~~-L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          260 GAAAVVDAFSK--LENIGLQT-LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HHHHHHHHHHT--CSSCCCCE-EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             hHHHHHHHHhh--ccCCCeEE-EECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence                 222211  01345888 8888888876     6654433446666777777764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=4.2e-17  Score=148.17  Aligned_cols=171  Identities=27%  Similarity=0.333  Sum_probs=142.8

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      |++|+.|++++|.+..  ++.+..+++|+.|++++|.+..++.+..+++|+.|++++|.+..++  .+..+++|+.|+++
T Consensus        42 L~~L~~L~l~~n~i~~--l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLE  117 (605)
T ss_dssp             HTTCCCCBCTTCCCCC--CTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECT
T ss_pred             CCCCCEEECcCCCCCC--ChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEec
Confidence            5678999999999887  6779999999999999999998888889999999999999998865  37889999999999


Q ss_pred             cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccccc
Q psy3787          82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV  161 (263)
Q Consensus        82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  161 (263)
                      +|.++.++. +..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+.++++ +..  ...|+.|+++.+.+     
T Consensus       118 ~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~--l~~L~~L~Ls~N~i-----  187 (605)
T 1m9s_A          118 HNGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAG--LTKLQNLYLSKNHI-----  187 (605)
T ss_dssp             TSCCCCCGG-GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTT--CTTCCEEECCSSCC-----
T ss_pred             CCCCCCCcc-ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hcc--CCCCCEEECcCCCC-----
Confidence            999998754 77889999999999999988 478899999999999999999766 222  35677888877763     


Q ss_pred             CCCCCCCcCCcccccccccccCCcceeccc--cccccCh
Q psy3787         162 DGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPE  198 (263)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~  198 (263)
                                 ..+ +.+..+++|+.|+++  .+...|.
T Consensus       188 -----------~~l-~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          188 -----------SDL-RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             -----------CBC-GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             -----------CCC-hHHccCCCCCEEEccCCcCcCCcc
Confidence                       333 358889999999999  6665543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=6.9e-17  Score=128.81  Aligned_cols=146  Identities=25%  Similarity=0.378  Sum_probs=91.0

Q ss_pred             CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787           6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN   82 (263)
Q Consensus         6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~   82 (263)
                      +.++++++.++.  +|. +.  ++++.|++++|.++.++  .+..+++|++|++++|.+..+.+..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~~--iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLTE--IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCSS--CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcCc--CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            345666666665  444 22  56777777777776555  366667777777777777766666667777777777777


Q ss_pred             CcCcccccc-ccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcc
Q psy3787          83 NKISEVSSN-VGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY  156 (263)
Q Consensus        83 ~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~  156 (263)
                      |+++.+|.. +..+++|++|++++|.++.+ +..+..+++|+.|++++|.+++++...+... ..++.+++.++++
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~~  164 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL-RAIQTMHLAQNPF  164 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSSCE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC-CCCCEEEeCCCCc
Confidence            777766554 45667777777777777665 3446667777777777777766654432221 2344444444444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=1.5e-16  Score=124.63  Aligned_cols=149  Identities=19%  Similarity=0.221  Sum_probs=125.9

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +++|+.|++++|.+..  ++.+..+++|++|++++|.+..++.+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus        43 l~~L~~L~l~~n~i~~--l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           43 MNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HHTCCEEEEESSCCSC--CTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             cCCccEEeccCCCccC--hHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            4578999999999986  66889999999999999999888888999999999999999997656668899999999999


Q ss_pred             cCcCcc-ccccccCCCCcCEEEccCCc-CCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcc
Q psy3787          82 NNKISE-VSSNVGDLINLAILDLSDNE-LTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY  156 (263)
Q Consensus        82 ~~~l~~-lp~~~~~l~~L~~L~l~~n~-l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~  156 (263)
                      +|+++. .+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|.++.++ .+..  ...++.+++.++.+
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~--l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIED--FPKLNQLYAFSQTI  193 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGG--CSSCCEEEECBC--
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-Hhcc--CCCCCEEEeeCccc
Confidence            999994 67778899999999999997 88887 6899999999999999999876 2222  24566677666553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=1.8e-16  Score=126.40  Aligned_cols=147  Identities=25%  Similarity=0.320  Sum_probs=75.5

Q ss_pred             EEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc---CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787           7 TLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN   82 (263)
Q Consensus         7 ~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~   82 (263)
                      .+++++|.++.  +|. +  .+.++.|++++|.++.++   .+..+++|++|++++|.++.+++..|..+++|++|++++
T Consensus        15 ~l~~s~n~l~~--iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           15 TVDCSNQKLNK--IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             EEECCSSCCSS--CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EeEeCCCCccc--CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            45555555554  333 2  123455555555555442   145555555555555555555555555555555555555


Q ss_pred             CcCccccc-cccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccc
Q psy3787          83 NKISEVSS-NVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC  158 (263)
Q Consensus        83 ~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~  158 (263)
                      |.++.++. .+..+++|++|++++|.++.+ |..+..+++|+.|++++|.++++++..+.. ...++.+++.++.+.|
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT-LHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT-CTTCCEEECCSCCEEC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC-CCCCCEEEecCcCCcC
Confidence            55554433 245555555555555555544 334555555555555555555553333222 1244455555555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=1.5e-16  Score=126.87  Aligned_cols=130  Identities=27%  Similarity=0.408  Sum_probs=104.9

Q ss_pred             CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      .+++|++++|+++....+. +.++++|+.|++++|.++.++  .+..+++|++|++++|.++.+++..|..+++|++|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            4678888888887732222 778888888888888888665  4788888888888888888888888888888888888


Q ss_pred             ecCcCccc-cccccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCC
Q psy3787          81 KNNKISEV-SSNVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKT  133 (263)
Q Consensus        81 ~~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~  133 (263)
                      ++|+++.+ |..+..+++|++|++++|.++.+ |..+..+++|+.+++++|++..
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            88888866 56678888888888888888877 5668888888888888888765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=3.2e-16  Score=128.34  Aligned_cols=126  Identities=30%  Similarity=0.378  Sum_probs=114.4

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +++|+.|++++|++..  ++.+..+++|+.|++++|.++.++.+..+++|++|++++|.++++++  +.. ++|++|+++
T Consensus        40 l~~L~~L~l~~n~i~~--l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~  114 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLD  114 (263)
T ss_dssp             HTTCSEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTT--CCC-SSCCEEECC
T ss_pred             cCcCcEEECcCCCccc--chHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCc--ccc-CcccEEEcc
Confidence            5789999999999987  67899999999999999999988889999999999999999998765  333 899999999


Q ss_pred             cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCc
Q psy3787          82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTV  134 (263)
Q Consensus        82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~  134 (263)
                      +|+++.++ .+..+++|++|++++|.++.++ .++.+++|+.|++++|.++++
T Consensus       115 ~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          115 NNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             SSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence            99999886 4789999999999999999887 688999999999999998887

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=3e-16  Score=125.08  Aligned_cols=131  Identities=29%  Similarity=0.394  Sum_probs=117.1

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      ++++.|++++|++.......|.++++|+.|++++|.++.+.  .|..+++|++|++++|.++.+++..|..+++|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            46899999999999832224999999999999999999763  5899999999999999999999988899999999999


Q ss_pred             ecCcCccc-cccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCC
Q psy3787          81 KNNKISEV-SSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKT  133 (263)
Q Consensus        81 ~~~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~  133 (263)
                      ++|+++.+ |..+..+++|++|++++|.++.++. .+..+++|+.+++++|++..
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            99999977 5668899999999999999998865 48899999999999998865

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=9.1e-17  Score=123.56  Aligned_cols=128  Identities=20%  Similarity=0.204  Sum_probs=83.8

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCC-CCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMR-SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      +++|++|++++|++..  ++.+..+. +|++|++++|.++.++.+..+++|++|++++|.++.+++..+..+++|++|++
T Consensus        18 ~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             TTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            3456677777776665  45544443 67777777777666666666677777777777776666555566677777777


Q ss_pred             ecCcCccccc--cccCCCCcCEEEccCCcCCCcccc----ccCCCcccEEEecCCCC
Q psy3787          81 KNNKISEVSS--NVGDLINLAILDLSDNELTDVPCE----LSSLFHLKSLFLGGNPI  131 (263)
Q Consensus        81 ~~~~l~~lp~--~~~~l~~L~~L~l~~n~l~~l~~~----~~~l~~L~~L~l~~n~l  131 (263)
                      ++|+++.+|.  .+..+++|+++++++|.+..+|..    ++.+++|+.+++++|.+
T Consensus        96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            7777766665  566666777777777766666553    66666777776666643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=2.3e-16  Score=117.86  Aligned_cols=125  Identities=26%  Similarity=0.186  Sum_probs=86.0

Q ss_pred             CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      ++++.|++++|.+....+|. +..+++|++|++++|.++.++.+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls   96 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS   96 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence            45777777777776223554 67777777777777777766666777777777777777776555556667777777777


Q ss_pred             cCcCcccc--ccccCCCCcCEEEccCCcCCCccc----cccCCCcccEEEec
Q psy3787          82 NNKISEVS--SNVGDLINLAILDLSDNELTDVPC----ELSSLFHLKSLFLG  127 (263)
Q Consensus        82 ~~~l~~lp--~~~~~l~~L~~L~l~~n~l~~l~~----~~~~l~~L~~L~l~  127 (263)
                      +|.++.++  ..+..+++|+++++++|.++.++.    .++.+++|+.|+++
T Consensus        97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            77777654  556677777777777777776654    46667777776654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=2.3e-16  Score=146.47  Aligned_cols=118  Identities=25%  Similarity=0.354  Sum_probs=105.9

Q ss_pred             cCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEE
Q psy3787          23 FIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAIL  101 (263)
Q Consensus        23 ~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L  101 (263)
                      +..++.|+.|+|++|.+..+| .+..+++|++|++++|.++.++ ..+..+++|++|++++|+++.+|..++.+.+|++|
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            888999999999999999887 4668899999999999999776 45889999999999999999999999999999999


Q ss_pred             EccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHh
Q psy3787         102 DLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQD  141 (263)
Q Consensus       102 ~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  141 (263)
                      ++++|.++.+|..++.+++|+.|++++|.+++.++..+..
T Consensus       299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             ECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            9999999999989999999999999999999866655544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.65  E-value=3.3e-17  Score=141.28  Aligned_cols=207  Identities=14%  Similarity=0.105  Sum_probs=149.7

Q ss_pred             CCCCCEEEeecCccCCC--Cccc--------cCCCCCCcEEEecCCCCCC-----Cc-CCCCCCCCcEEEecCCCCCCCc
Q psy3787           2 LSHLKTLDLSHNKLVSD--SLPL--------FIDMRSLTELNLSYNQLTM-----LP-VCTDCKNLTHLLLGFNKINNME   65 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~--~~~~--------~~~l~~L~~L~l~~n~l~~-----l~-~~~~~~~L~~L~l~~n~~~~~~   65 (263)
                      +++|+.|++++|.+...  .+|.        +..+++|++|++++|.++.     ++ .+..+++|++|++++|.++...
T Consensus        59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~  138 (386)
T 2ca6_A           59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  138 (386)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence            67899999999765531  1232        3789999999999999986     33 4677899999999999987544


Q ss_pred             hhhhh----CC---------CCccEEEeecCcCc--ccc---ccccCCCCcCEEEccCCcCC--C---c-cccccCCCcc
Q psy3787          66 NDYFL----TL---------TKLSLLNLKNNKIS--EVS---SNVGDLINLAILDLSDNELT--D---V-PCELSSLFHL  121 (263)
Q Consensus        66 ~~~~~----~l---------~~L~~L~l~~~~l~--~lp---~~~~~l~~L~~L~l~~n~l~--~---l-~~~~~~l~~L  121 (263)
                      +..+.    .+         ++|++|++++|+++  .++   ..+..+++|++|++++|.++  .   + +..+..+++|
T Consensus       139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L  218 (386)
T 2ca6_A          139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL  218 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred             HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence            33333    33         89999999999997  444   45677889999999999998  2   3 3378899999


Q ss_pred             cEEEecCCCCCC-----cchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccc--cccCCcceeccc--c
Q psy3787         122 KSLFLGGNPIKT-----VRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK--YKLDRTKTLTLC--K  192 (263)
Q Consensus       122 ~~L~l~~n~l~~-----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~--~  192 (263)
                      +.|++++|.++.     ++..+..  ...++.|+++.+.+     .+.+      ...++..+  ..+++|++|+++  .
T Consensus       219 ~~L~Ls~n~l~~~g~~~l~~~l~~--~~~L~~L~L~~n~i-----~~~~------~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          219 KVLDLQDNTFTHLGSSALAIALKS--WPNLRELGLNDCLL-----SARG------AAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHGGG--CTTCCEEECTTCCC-----CHHH------HHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             cEEECcCCCCCcHHHHHHHHHHcc--CCCcCEEECCCCCC-----chhh------HHHHHHHHhhccCCCeEEEECcCCc
Confidence            999999999853     3322111  34566777766653     0000      11234455  348999999999  7


Q ss_pred             ccc-----cChhHHhhcCCccceeEEEeccCCcccccC
Q psy3787         193 VIN-----IPESVYMRGMSSQECTIEINIDKYKLDRTK  225 (263)
Q Consensus       193 ~~~-----l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip  225 (263)
                      ++.     +|..++...+   +|+. |++++|+++...
T Consensus       286 i~~~g~~~l~~~l~~~l~---~L~~-L~l~~N~l~~~~  319 (386)
T 2ca6_A          286 IELDAVRTLKTVIDEKMP---DLLF-LELNGNRFSEED  319 (386)
T ss_dssp             CBHHHHHHHHHHHHHHCT---TCCE-EECTTSBSCTTS
T ss_pred             CCHHHHHHHHHHHHhcCC---CceE-EEccCCcCCcch
Confidence            766     8877755322   5999 999999998555

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.64  E-value=1e-16  Score=137.19  Aligned_cols=204  Identities=18%  Similarity=0.165  Sum_probs=145.8

Q ss_pred             EEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc------CCCCCC-CCcEEEecCCCCCCCchhhhhCC-----C
Q psy3787           7 TLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP------VCTDCK-NLTHLLLGFNKINNMENDYFLTL-----T   73 (263)
Q Consensus         7 ~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~------~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l-----~   73 (263)
                      .+.+++|.+.+ .+|. +...++|++|++++|.++..+      .+..++ +|++|++++|.++...+..+..+     +
T Consensus         2 ~~~ls~n~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSN-PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCC-HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchH-HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            35788888886 3555 444556999999999998654      356677 89999999999998777666664     8


Q ss_pred             CccEEEeecCcCcccc-c----cccCC-CCcCEEEccCCcCCCccc-c----ccC-CCcccEEEecCCCCCCcchHHHHh
Q psy3787          74 KLSLLNLKNNKISEVS-S----NVGDL-INLAILDLSDNELTDVPC-E----LSS-LFHLKSLFLGGNPIKTVRNDILQD  141 (263)
Q Consensus        74 ~L~~L~l~~~~l~~lp-~----~~~~l-~~L~~L~l~~n~l~~l~~-~----~~~-l~~L~~L~l~~n~l~~~~~~~~~~  141 (263)
                      +|++|++++|.++..+ .    .+... ++|++|++++|.++..+. .    +.. .++|+.|++++|.++......+..
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            9999999999998543 2    24445 899999999999986542 2    344 369999999999998755544332


Q ss_pred             H----HHHhhhhhCCCCcccccccCCCCCCCcCCccccccccccc-CCcceeccc--cccc-----cChhHHhhcCCccc
Q psy3787         142 S----KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKL-DRTKTLTLC--KVIN-----IPESVYMRGMSSQE  209 (263)
Q Consensus       142 ~----~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~--~~~~-----l~~~~~~~~~~~~~  209 (263)
                      .    ...++.|+++.+.+     .+.+      ...+...+..+ ++|++|+++  .++.     ++..+.....   +
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l-----~~~~------~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~---~  226 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNL-----ASKN------CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN---H  226 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCG-----GGSC------HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCT---T
T ss_pred             HHhcCCccccEeeecCCCC-----chhh------HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCC---C
Confidence            2    12677777776663     1111      11122234445 599999999  7766     5555555332   6


Q ss_pred             eeEEEeccCCcccccCc
Q psy3787         210 CTIEINIDKYKLDRTKT  226 (263)
Q Consensus       210 L~~~L~ls~n~l~~ip~  226 (263)
                      |+. |++++|+++..+.
T Consensus       227 L~~-L~Ls~N~l~~~~~  242 (362)
T 3goz_A          227 VVS-LNLCLNCLHGPSL  242 (362)
T ss_dssp             CCE-EECCSSCCCCCCH
T ss_pred             ceE-EECcCCCCCcHHH
Confidence            999 9999999987655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=3.8e-15  Score=116.16  Aligned_cols=124  Identities=31%  Similarity=0.367  Sum_probs=111.1

Q ss_pred             CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcC---CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPV---CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +.+++++|.++.  +|. +.  .+++.|++++|.++.++.   +..+++|++|++++|.++++.+..|..+++|++|+++
T Consensus        11 ~~l~~s~~~l~~--ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLKE--IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSS--CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcCc--CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            679999999977  666 43  389999999999998763   7899999999999999999988889999999999999


Q ss_pred             cCcCccccc-cccCCCCcCEEEccCCcCCCc-cccccCCCcccEEEecCCCCCC
Q psy3787          82 NNKISEVSS-NVGDLINLAILDLSDNELTDV-PCELSSLFHLKSLFLGGNPIKT  133 (263)
Q Consensus        82 ~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~  133 (263)
                      +|+++.++. .+..+++|++|++++|.++.+ |..+..+++|+.+++++|++..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            999997765 488999999999999999976 6679999999999999999986

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.61  E-value=2.8e-16  Score=132.71  Aligned_cols=218  Identities=15%  Similarity=0.122  Sum_probs=157.4

Q ss_pred             CCEEEeecCccCCCCccccCCC--CCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCC-chhhhhCCCCccEEEe
Q psy3787           5 LKTLDLSHNKLVSDSLPLFIDM--RSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNM-ENDYFLTLTKLSLLNL   80 (263)
Q Consensus         5 L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l   80 (263)
                      ++.++++++.+..   ..+..+  +.++.+++++|.+...+ .+..+++|++|++++|.+... .+..+..+++|++|++
T Consensus        49 ~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           49 WQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             SSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             heeeccccccCCH---HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            6789999887652   225556  89999999999988554 567789999999999998754 5566889999999999


Q ss_pred             ecCcCc-cccccccCCCCcCEEEccCC-cCCC--ccccccCCCcccEEEecCC-CCCCcc-hHHHHhHHH-HhhhhhCCC
Q psy3787          81 KNNKIS-EVSSNVGDLINLAILDLSDN-ELTD--VPCELSSLFHLKSLFLGGN-PIKTVR-NDILQDSKR-IISHIKTSR  153 (263)
Q Consensus        81 ~~~~l~-~lp~~~~~l~~L~~L~l~~n-~l~~--l~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~~~~-~l~~l~~~~  153 (263)
                      ++|.++ ..+..+..+++|++|++++| .++.  ++..+..+++|+.|++++| .++... ...+.. .. .++.++++.
T Consensus       126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-l~~~L~~L~l~~  204 (336)
T 2ast_B          126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH-VSETITQLNLSG  204 (336)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH-SCTTCCEEECCS
T ss_pred             cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh-cccCCCEEEeCC
Confidence            999988 66778888999999999999 6773  6766889999999999999 887631 111111 33 667777765


Q ss_pred             CcccccccCCCCCCCcCCcccccccccccCCcceeccc--c-cc-ccChhHHhhcCCccceeEEEeccCCc-ccccCccc
Q psy3787         154 LDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--K-VI-NIPESVYMRGMSSQECTIEINIDKYK-LDRTKTLT  228 (263)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~-~~-~l~~~~~~~~~~~~~L~~~L~ls~n~-l~~ip~~~  228 (263)
                      +..   .+.         ...++..+..+++|++|+++  . ++ ..+..+...    ++|+. |++++|. +.......
T Consensus       205 ~~~---~~~---------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l----~~L~~-L~l~~~~~~~~~~~~~  267 (336)
T 2ast_B          205 YRK---NLQ---------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL----NYLQH-LSLSRCYDIIPETLLE  267 (336)
T ss_dssp             CGG---GSC---------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC----TTCCE-EECTTCTTCCGGGGGG
T ss_pred             Ccc---cCC---------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC----CCCCE-eeCCCCCCCCHHHHHH
Confidence            531   000         13455566789999999999  4 44 445555444    46999 9999996 32111112


Q ss_pred             cccccccccccccCC
Q psy3787         229 LCKVINIPESVYMNR  243 (263)
Q Consensus       229 ~~~~~~l~~~~~~~~  243 (263)
                      ...+.++..+.+.|+
T Consensus       268 l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          268 LGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGCTTCCEEECTTS
T ss_pred             HhcCCCCCEEeccCc
Confidence            334566666677666

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.60  E-value=7.1e-17  Score=142.10  Aligned_cols=208  Identities=15%  Similarity=0.081  Sum_probs=101.6

Q ss_pred             CCCCCCcEEEecCCCCCCCc--CC-----CCCCCCcEEEecCCCCCCCc----hhhhhCCCCccEEEeecCcCccc----
Q psy3787          24 IDMRSLTELNLSYNQLTMLP--VC-----TDCKNLTHLLLGFNKINNME----NDYFLTLTKLSLLNLKNNKISEV----   88 (263)
Q Consensus        24 ~~l~~L~~L~l~~n~l~~l~--~~-----~~~~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~~~l~~l----   88 (263)
                      ..+++|+.|++++|.+....  .+     ...++|++|++++|.++...    +..+..+++|++|++++|.++..    
T Consensus       167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  246 (461)
T 1z7x_W          167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE  246 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred             hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence            34455555555555544211  11     02335666666666555431    33345556666666666665522    


Q ss_pred             -cc-cccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCCcchHHHHhH----HHHhhhhhCCCCccc
Q psy3787          89 -SS-NVGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKTVRNDILQDS----KRIISHIKTSRLDYH  157 (263)
Q Consensus        89 -p~-~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----~~~l~~l~~~~~~~~  157 (263)
                       +. ....+++|++|++++|.++.     ++..+..+++|+.|++++|.++..+...+...    ...++.++++.+.+.
T Consensus       247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  326 (461)
T 1z7x_W          247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT  326 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence             12 22345666666666666664     45455556666777776666554333222221    023444444444320


Q ss_pred             ccccCCCCCCCcCCcccccccccccCCcceeccc--ccccc-ChhHHhhcC-CccceeEEEeccCCccc-----ccCccc
Q psy3787         158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINI-PESVYMRGM-SSQECTIEINIDKYKLD-----RTKTLT  228 (263)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l-~~~~~~~~~-~~~~L~~~L~ls~n~l~-----~ip~~~  228 (263)
                           +.+      ...++..+..+++|++|+++  .++.. +..+..... ..++|+. |++++|+++     .+|. .
T Consensus       327 -----~~~------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~-L~L~~n~i~~~~~~~l~~-~  393 (461)
T 1z7x_W          327 -----AAC------CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV-LWLADCDVSDSSCSSLAA-T  393 (461)
T ss_dssp             -----GGG------HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE-EECTTSCCCHHHHHHHHH-H
T ss_pred             -----hHH------HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE-EECCCCCCChhhHHHHHH-H
Confidence                 000      11234445566777777777  45433 222222111 1235777 777777776     3332 1


Q ss_pred             cccccccccccccCCc
Q psy3787         229 LCKVINIPESVYMNRP  244 (263)
Q Consensus       229 ~~~~~~l~~~~~~~~~  244 (263)
                      .....++..+.+.+|+
T Consensus       394 l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          394 LLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHHCCCCCEEECCSSS
T ss_pred             HHhCCCccEEECCCCC
Confidence            2223445555666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=1.1e-14  Score=113.55  Aligned_cols=124  Identities=31%  Similarity=0.459  Sum_probs=108.8

Q ss_pred             CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC
Q psy3787           6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN   83 (263)
Q Consensus         6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~   83 (263)
                      +.++++++.++.  +|. +  .++++.|++++|.++.+| .+..+++|++|++++|.++.+++..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~~--ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKV--LPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSS--CCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCc--CCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            568889998887  665 3  368999999999999887 5888999999999999999999888999999999999999


Q ss_pred             cCccccc-cccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCC
Q psy3787          84 KISEVSS-NVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKT  133 (263)
Q Consensus        84 ~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~  133 (263)
                      +++.++. .+..+++|++|++++|.++.+|. .+..+++|+.+++++|++..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            9998765 58899999999999999998876 48889999999999998765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=1.1e-14  Score=110.92  Aligned_cols=110  Identities=27%  Similarity=0.252  Sum_probs=84.2

Q ss_pred             CCCCCcEEEecCCCCC--CCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcc-ccccccCCCCcCE
Q psy3787          25 DMRSLTELNLSYNQLT--MLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISE-VSSNVGDLINLAI  100 (263)
Q Consensus        25 ~l~~L~~L~l~~n~l~--~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~  100 (263)
                      ..++|+.|++++|.++  .+|. +..+++|++|++++|.+..+  ..+..+++|++|++++|+++. +|..+..+++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3477888888888887  6664 57778888888888888776  447778888888888888886 6666666788888


Q ss_pred             EEccCCcCCCcc--ccccCCCcccEEEecCCCCCCcch
Q psy3787         101 LDLSDNELTDVP--CELSSLFHLKSLFLGGNPIKTVRN  136 (263)
Q Consensus       101 L~l~~n~l~~l~--~~~~~l~~L~~L~l~~n~l~~~~~  136 (263)
                      |++++|.++.++  ..+..+++|+.|++++|.+++++.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence            888888888765  567788888888888887776653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=4.9e-14  Score=108.22  Aligned_cols=130  Identities=30%  Similarity=0.385  Sum_probs=113.2

Q ss_pred             CCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787           5 LKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN   82 (263)
Q Consensus         5 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~   82 (263)
                      .+.++++++++..  +|. .-.++|+.|++++|.++.++.  +..+++|++|++++|.++.+++..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~--~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTS--VPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSS--CCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCcc--CCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4678999998887  554 224799999999999998774  78899999999999999999988889999999999999


Q ss_pred             CcCcccccc-ccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcchH
Q psy3787          83 NKISEVSSN-VGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRND  137 (263)
Q Consensus        83 ~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~  137 (263)
                      |+++.+|.. +..+++|++|++++|.++.+|.. +..+++|+.+++++|++....+.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence            999988765 68899999999999999998765 68899999999999999885543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.57  E-value=1.7e-16  Score=139.58  Aligned_cols=133  Identities=20%  Similarity=0.222  Sum_probs=85.0

Q ss_pred             CCCCCEEEeecCccCCCC---ccc-cCCCCCCcEEEecCCCCCCC--cC-CCCCC----CCcEEEecCCCCCC----Cch
Q psy3787           2 LSHLKTLDLSHNKLVSDS---LPL-FIDMRSLTELNLSYNQLTML--PV-CTDCK----NLTHLLLGFNKINN----MEN   66 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~---~~~-~~~l~~L~~L~l~~n~l~~l--~~-~~~~~----~L~~L~l~~n~~~~----~~~   66 (263)
                      +++|++|++++|.++...   ++. +..+++|++|++++|.+...  .. ...++    +|++|++++|.++.    ..+
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  106 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  106 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence            467888888888876421   233 66778888888888877632  11 11222    68888888887774    235


Q ss_pred             hhhhCCCCccEEEeecCcCccc-c----cc-ccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCCc
Q psy3787          67 DYFLTLTKLSLLNLKNNKISEV-S----SN-VGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKTV  134 (263)
Q Consensus        67 ~~~~~l~~L~~L~l~~~~l~~l-p----~~-~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~  134 (263)
                      ..+..+++|++|++++|.++.. +    .. .....+|++|++++|.++.     ++..+..+++|+.|++++|.++..
T Consensus       107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  185 (461)
T 1z7x_W          107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA  185 (461)
T ss_dssp             HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence            5677778888888888877622 1    12 1234567777777777664     244455667777777777766553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=6.2e-15  Score=113.23  Aligned_cols=116  Identities=22%  Similarity=0.287  Sum_probs=103.0

Q ss_pred             ccccCCCCCCcEEEecCCCCCCCcCCCCCC-CCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccc-cCCCC
Q psy3787          20 LPLFIDMRSLTELNLSYNQLTMLPVCTDCK-NLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLIN   97 (263)
Q Consensus        20 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~   97 (263)
                      .+.+..+++|+.|++++|.++.++.+..+. +|++|++++|.++++  ..+..+++|++|++++|+++.+|..+ ..+++
T Consensus        12 ~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           12 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             HHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            445788999999999999999888776665 999999999999987  34888999999999999999988664 88999


Q ss_pred             cCEEEccCCcCCCccc--cccCCCcccEEEecCCCCCCcchH
Q psy3787          98 LAILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPIKTVRND  137 (263)
Q Consensus        98 L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~  137 (263)
                      |++|++++|.++.+|.  .++.+++|+.+++++|++..++..
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~  131 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY  131 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTH
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhH
Confidence            9999999999999887  789999999999999999887654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=7.4e-15  Score=123.98  Aligned_cols=100  Identities=14%  Similarity=0.000  Sum_probs=69.0

Q ss_pred             CCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcc-eeccc-cccc
Q psy3787         118 LFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTK-TLTLC-KVIN  195 (263)
Q Consensus       118 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~-~~~~  195 (263)
                      +++|+.+++.+|.++.++...+... ..|+.+.+..+-                ..--...|.++++|+ .+++. .++.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~-~~L~~l~l~~ni----------------~~I~~~aF~~~~~L~~~l~l~~~l~~  287 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQK-KYLLKIKLPHNL----------------KTIGQRVFSNCGRLAGTLELPASVTA  287 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTC-TTCCEEECCTTC----------------CEECTTTTTTCTTCCEEEEECTTCCE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCC-CCCCEEECCccc----------------ceehHHHhhCChhccEEEEEcccceE
Confidence            6677777777777777776665543 234444442221                111122478889999 99999 9999


Q ss_pred             cChhHHhhcCCccceeEEEeccCCcccccCccccccccccccc
Q psy3787         196 IPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPES  238 (263)
Q Consensus       196 l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~  238 (263)
                      +++..|....   +|+. +++++|.++.|+..++.+..++..+
T Consensus       288 I~~~aF~~c~---~L~~-l~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          288 IEFGAFMGCD---NLRY-VLATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             ECTTTTTTCT---TEEE-EEECSSCCCEECTTTTCTTCCCCEE
T ss_pred             EchhhhhCCc---cCCE-EEeCCCccCccchhhhcCCcchhhh
Confidence            9887776554   7999 9999999999998887655555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.52  E-value=1.9e-14  Score=107.35  Aligned_cols=110  Identities=25%  Similarity=0.258  Sum_probs=98.5

Q ss_pred             CCCCCcEEEecCCCCC--CCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcc-ccccccCCCCcCE
Q psy3787          25 DMRSLTELNLSYNQLT--MLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISE-VSSNVGDLINLAI  100 (263)
Q Consensus        25 ~l~~L~~L~l~~n~l~--~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~  100 (263)
                      ..++++.|++++|.++  .+|. +..+++|++|++++|.+..+  ..+..+++|++|++++|.++. +|..+..+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            4578999999999998  6774 68899999999999999987  558899999999999999997 7877778999999


Q ss_pred             EEccCCcCCCcc--ccccCCCcccEEEecCCCCCCcch
Q psy3787         101 LDLSDNELTDVP--CELSSLFHLKSLFLGGNPIKTVRN  136 (263)
Q Consensus       101 L~l~~n~l~~l~--~~~~~l~~L~~L~l~~n~l~~~~~  136 (263)
                      |++++|.++.++  ..++.+++|+.+++++|.+++++.
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            999999999875  679999999999999999988775

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.47  E-value=2.9e-13  Score=105.53  Aligned_cols=105  Identities=29%  Similarity=0.434  Sum_probs=96.3

Q ss_pred             CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      +++++|++++|.++.  +|. +.++++|+.|++++|.++.++  .|..+++|++|++++|.+..+++..|..+++|+.|+
T Consensus        31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence            478999999999987  555 999999999999999999877  489999999999999999999998899999999999


Q ss_pred             eecCcCcccccc-ccCCCCcCEEEccCCcCC
Q psy3787          80 LKNNKISEVSSN-VGDLINLAILDLSDNELT  109 (263)
Q Consensus        80 l~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~  109 (263)
                      +++|.++.+|.. +..+++|+.+++++|.+.
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            999999988774 788999999999999875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.47  E-value=1.1e-14  Score=135.07  Aligned_cols=91  Identities=32%  Similarity=0.410  Sum_probs=49.4

Q ss_pred             CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEE
Q psy3787          45 CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSL  124 (263)
Q Consensus        45 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L  124 (263)
                      +..+..|+.|++++|.+..++... ..+++|++|++++|.++.+|..++.+.+|++|++++|.++.+|..++.+++|++|
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISANI-FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGGG-GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             hccCCCCcEEECCCCCCCCCChhh-cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            444555555555555555544442 2455555555555555555555555555555555555555555555555555555


Q ss_pred             EecCCCCCCcch
Q psy3787         125 FLGGNPIKTVRN  136 (263)
Q Consensus       125 ~l~~n~l~~~~~  136 (263)
                      ++++|.++.+|.
T Consensus       299 ~L~~N~l~~lp~  310 (727)
T 4b8c_D          299 YFFDNMVTTLPW  310 (727)
T ss_dssp             ECCSSCCCCCCS
T ss_pred             ECCCCCCCccCh
Confidence            555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.47  E-value=1.7e-13  Score=123.70  Aligned_cols=109  Identities=27%  Similarity=0.262  Sum_probs=94.9

Q ss_pred             CCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCc
Q psy3787          28 SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNE  107 (263)
Q Consensus        28 ~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~  107 (263)
                      .|+.|++++|.++.+|.+..+++|+.|++++|.++.+|. .+..+++|+.|++++|+++.+| .++.+++|+.|++++|.
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence            588899999999988888888999999999999987755 5888999999999999999888 78889999999999999


Q ss_pred             CCCc--cccccCCCcccEEEecCCCCCCcchHH
Q psy3787         108 LTDV--PCELSSLFHLKSLFLGGNPIKTVRNDI  138 (263)
Q Consensus       108 l~~l--~~~~~~l~~L~~L~l~~n~l~~~~~~~  138 (263)
                      ++.+  |..++.+++|+.|++++|+++++|+..
T Consensus       520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            9877  778999999999999999998876643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.46  E-value=2.1e-13  Score=106.15  Aligned_cols=108  Identities=25%  Similarity=0.308  Sum_probs=93.3

Q ss_pred             CcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchh-hhhCCCCccEEEeecCcCccc-cccccCCCCcCEEEccCC
Q psy3787          29 LTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMEND-YFLTLTKLSLLNLKNNKISEV-SSNVGDLINLAILDLSDN  106 (263)
Q Consensus        29 L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~n  106 (263)
                      -+.++++++.++.+|.- -...+++|++++|.+..+++. .+..+++|++|++++|+++.+ |..+..+.+|++|++++|
T Consensus        10 ~~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TTEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            37899999999988851 123899999999999988764 588999999999999999977 678899999999999999


Q ss_pred             cCCCccc-cccCCCcccEEEecCCCCCCcchH
Q psy3787         107 ELTDVPC-ELSSLFHLKSLFLGGNPIKTVRND  137 (263)
Q Consensus       107 ~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~  137 (263)
                      .++.++. .+..+++|+.|++++|.++++++.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  120 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence            9998754 489999999999999999886543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.45  E-value=1.4e-13  Score=124.18  Aligned_cols=102  Identities=19%  Similarity=0.285  Sum_probs=65.8

Q ss_pred             CCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCC
Q psy3787          50 NLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGN  129 (263)
Q Consensus        50 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n  129 (263)
                      .|+.|++++|.+++++.  +..+++|+.|++++|.++.+|..++.+++|+.|++++|.++.+| .++.+++|+.|++++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence            46667777777666543  66666777777777777766666666777777777777776666 6666777777777777


Q ss_pred             CCCCc--chHHHHhHHHHhhhhhCCCCcc
Q psy3787         130 PIKTV--RNDILQDSKRIISHIKTSRLDY  156 (263)
Q Consensus       130 ~l~~~--~~~~~~~~~~~l~~l~~~~~~~  156 (263)
                      .++++  |..+...  ..|+.++++++.+
T Consensus       519 ~l~~~~~p~~l~~l--~~L~~L~L~~N~l  545 (567)
T 1dce_A          519 RLQQSAAIQPLVSC--PRLVLLNLQGNSL  545 (567)
T ss_dssp             CCCSSSTTGGGGGC--TTCCEEECTTSGG
T ss_pred             CCCCCCCcHHHhcC--CCCCEEEecCCcC
Confidence            77665  4333322  2455566655554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.45  E-value=9.7e-13  Score=100.90  Aligned_cols=108  Identities=33%  Similarity=0.376  Sum_probs=96.1

Q ss_pred             CCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC--CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           3 SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV--CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      +++++|++++|++.......+..+++|++|++++|.++.++.  +..+++|++|++++|.++++++..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            579999999999987322238899999999999999998874  788999999999999999999888889999999999


Q ss_pred             ecCcCcccccc-ccCCCCcCEEEccCCcCCC
Q psy3787          81 KNNKISEVSSN-VGDLINLAILDLSDNELTD  110 (263)
Q Consensus        81 ~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~  110 (263)
                      ++|.++.+|.. +..+++|+++++++|.+..
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            99999988776 5789999999999998874

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=1.4e-12  Score=99.83  Aligned_cols=109  Identities=28%  Similarity=0.422  Sum_probs=96.3

Q ss_pred             CcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcccccc-ccCCCCcCEEEccCC
Q psy3787          29 LTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSN-VGDLINLAILDLSDN  106 (263)
Q Consensus        29 L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~n  106 (263)
                      -+.++++++.++.+|. +  .++|++|++++|.+.++++..|..+++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            4789999999998885 3  37899999999999999888899999999999999999998876 578999999999999


Q ss_pred             cCCCcccc-ccCCCcccEEEecCCCCCCcchHHH
Q psy3787         107 ELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDIL  139 (263)
Q Consensus       107 ~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~  139 (263)
                      .++.+|.. +..+++|+.|++++|++...+.++.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~  125 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIM  125 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGH
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccccHH
Confidence            99998765 8999999999999999998765443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.42  E-value=2.1e-12  Score=98.54  Aligned_cols=109  Identities=29%  Similarity=0.393  Sum_probs=94.2

Q ss_pred             CCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcccccc-ccCCCCcCEEEccCC
Q psy3787          28 SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSN-VGDLINLAILDLSDN  106 (263)
Q Consensus        28 ~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~n  106 (263)
                      ..+.+++++|.++.+|.-. .+++++|++++|.+.++++..|..+++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus        10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4578999999999888421 37899999999999999888899999999999999999988765 588999999999999


Q ss_pred             cCCCccc-cccCCCcccEEEecCCCCCCcchH
Q psy3787         107 ELTDVPC-ELSSLFHLKSLFLGGNPIKTVRND  137 (263)
Q Consensus       107 ~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~  137 (263)
                      .++.++. .+..+++|+.|++++|++.....+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~  120 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD  120 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence            9998876 488999999999999999876543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=4e-12  Score=97.34  Aligned_cols=104  Identities=25%  Similarity=0.320  Sum_probs=92.7

Q ss_pred             CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787           6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN   82 (263)
Q Consensus         6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~   82 (263)
                      +.+++++|+++.  +|. +.  ++|+.|++++|.++.++  .+..+++|++|++++|.+..+++..|..+++|++|++++
T Consensus        15 ~~l~~~~n~l~~--iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLAS--VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCc--cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            678999999987  776 43  89999999999999875  488999999999999999999988888999999999999


Q ss_pred             CcCcccccc-ccCCCCcCEEEccCCcCCCccc
Q psy3787          83 NKISEVSSN-VGDLINLAILDLSDNELTDVPC  113 (263)
Q Consensus        83 ~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~~  113 (263)
                      |+++.+|.. +..+++|++|++++|.+...+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            999998875 8899999999999999885543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=3.3e-12  Score=97.41  Aligned_cols=102  Identities=28%  Similarity=0.317  Sum_probs=91.7

Q ss_pred             CCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           5 LKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         5 L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      .+.+++++|.++.  +|. +  .+++++|++++|.++.++  .+..+++|++|++++|.++.+++..|..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~~--ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLAS--VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCc--cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4789999999988  665 4  389999999999999875  38899999999999999999999888999999999999


Q ss_pred             cCcCcccccc-ccCCCCcCEEEccCCcCCC
Q psy3787          82 NNKISEVSSN-VGDLINLAILDLSDNELTD  110 (263)
Q Consensus        82 ~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~  110 (263)
                      +|+++.+|.. +..+++|++|++++|.+.-
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            9999988764 8899999999999998873

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.35  E-value=7.5e-15  Score=114.96  Aligned_cols=129  Identities=26%  Similarity=0.359  Sum_probs=104.9

Q ss_pred             CCCEEEeecCccCCCC-----cc-ccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccE
Q psy3787           4 HLKTLDLSHNKLVSDS-----LP-LFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSL   77 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~-----~~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~   77 (263)
                      .++.++++.+.+....     +| .+..+++|++|++++|.++.+|.+..+++|++|++++|.+..++. .+..+++|++
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~   97 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN-LDAVADTLEE   97 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSE
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccc-hhhcCCcCCE
Confidence            4444555555554421     33 388899999999999999998888888999999999999987765 4666789999


Q ss_pred             EEeecCcCccccccccCCCCcCEEEccCCcCCCccc--cccCCCcccEEEecCCCCCCc
Q psy3787          78 LNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPIKTV  134 (263)
Q Consensus        78 L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~  134 (263)
                      |++++|+++.+| .+..+++|++|++++|.++.++.  .+..+++|+.+++++|++.+.
T Consensus        98 L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           98 LWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             EECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            999999999887 57788899999999999998764  688999999999999987664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.33  E-value=1.8e-14  Score=112.77  Aligned_cols=126  Identities=27%  Similarity=0.328  Sum_probs=107.7

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      +++|++|++++|.+..  +|.+.++++|++|++++|.++.+|. +..+++|++|++++|.+++++  .+..+++|+.|++
T Consensus        47 l~~L~~L~ls~n~l~~--l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l  122 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYM  122 (198)
T ss_dssp             TTTCSEEECSEEEESC--CCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEE
T ss_pred             CCCCCEEECCCCCCcc--ccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEEC
Confidence            6789999999999998  6688899999999999999998886 455689999999999999865  4788999999999


Q ss_pred             ecCcCccccc--cccCCCCcCEEEccCCcCCCc-cc----------cccCCCcccEEEecCCCCCC
Q psy3787          81 KNNKISEVSS--NVGDLINLAILDLSDNELTDV-PC----------ELSSLFHLKSLFLGGNPIKT  133 (263)
Q Consensus        81 ~~~~l~~lp~--~~~~l~~L~~L~l~~n~l~~l-~~----------~~~~l~~L~~L~l~~n~l~~  133 (263)
                      ++|.++.++.  .+..+++|+++++++|.+... |.          .+..+++|+.++  ++.++.
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            9999998765  688999999999999988754 32          278889999886  666655

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.28  E-value=9.7e-13  Score=110.94  Aligned_cols=173  Identities=11%  Similarity=0.155  Sum_probs=98.7

Q ss_pred             CCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccc-cccCCCCcCEEEccCCc----CCCc-cccccCCCcc
Q psy3787          48 CKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSS-NVGDLINLAILDLSDNE----LTDV-PCELSSLFHL  121 (263)
Q Consensus        48 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~n~----l~~l-~~~~~~l~~L  121 (263)
                      +.+|+.+++.+ .+..++..+|.++.+|+.+++.+|.+..++. .+..+.++..+....+.    ...+ ...+..+..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            66677777766 6666666667677777777777776665543 34555555555444321    1111 1123333333


Q ss_pred             c-EEEecCCCCCCcchHHHHh--------------------------HHHHhhhhhCCCCcccccccCCCCCCCcCCccc
Q psy3787         122 K-SLFLGGNPIKTVRNDILQD--------------------------SKRIISHIKTSRLDYHCQNVDGGGMSSQESTSE  174 (263)
Q Consensus       122 ~-~L~l~~n~l~~~~~~~~~~--------------------------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  174 (263)
                      + .+.+..  ...++...+..                          ....++.+++..+.                ...
T Consensus       179 ~~~i~~~~--~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~----------------i~~  240 (329)
T 3sb4_A          179 ETTIQVGA--MGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN----------------ATT  240 (329)
T ss_dssp             EEEEEECT--TCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC----------------CCE
T ss_pred             ceeEEecC--CCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC----------------cce
Confidence            3 222211  11122211111                          01233444443333                233


Q ss_pred             ccc-cccccCCcceeccc-cccccChhHHhhcCCcccee-EEEeccCCcccccCccccccccccccccccCCc
Q psy3787         175 INI-DKYKLDRTKTLTLC-KVINIPESVYMRGMSSQECT-IEINIDKYKLDRTKTLTLCKVINIPESVYMNRP  244 (263)
Q Consensus       175 ~~~-~~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~-~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~  244 (263)
                      ++. .+.++.+|+++++. +++.+++..|....   +|+ . +++.+ .++.|+..++.++.++..+.+.+|.
T Consensus       241 I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~---~L~~~-l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~  308 (329)
T 3sb4_A          241 IPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCG---RLAGT-LELPA-SVTAIEFGAFMGCDNLRYVLATGDK  308 (329)
T ss_dssp             ECTTTTTTCTTCCEEECCTTCCEECTTTTTTCT---TCCEE-EEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred             ecHhhhhCCCCCCEEECCcccceehHHHhhCCh---hccEE-EEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence            433 37788899999999 88889888776655   788 8 99988 7888988888777777777765554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=7.2e-13  Score=113.61  Aligned_cols=131  Identities=20%  Similarity=0.212  Sum_probs=63.1

Q ss_pred             CCCCEEEeecCccCCCCccc----cC-CCCCCcEEEecCCCCCC--CcC-CCCCCCCcEEEecCCCCCCCchhhh-----
Q psy3787           3 SHLKTLDLSHNKLVSDSLPL----FI-DMRSLTELNLSYNQLTM--LPV-CTDCKNLTHLLLGFNKINNMENDYF-----   69 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~----~~-~l~~L~~L~l~~n~l~~--l~~-~~~~~~L~~L~l~~n~~~~~~~~~~-----   69 (263)
                      ++|+.|++++|.++......    +. ..++|+.|++++|.++.  +.. ...+++|+.|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            34566666666655422111    11 22456666666665542  111 1223455566666665554332222     


Q ss_pred             hCCCCccEEEeecCcCcc-----ccccccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCC
Q psy3787          70 LTLTKLSLLNLKNNKISE-----VSSNVGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKT  133 (263)
Q Consensus        70 ~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~  133 (263)
                      ...++|++|++++|.++.     ++..+...++|++|++++|.++.     ++..+...++|+.|++++|.++.
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            123456666666665542     23333445556666666655542     22334445556666666555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.22  E-value=6.7e-11  Score=102.36  Aligned_cols=46  Identities=11%  Similarity=-0.010  Sum_probs=26.8

Q ss_pred             ccccCCcceeccc-cccccChhHHhhcCCccceeEEEeccCCcccccCcccc
Q psy3787         179 KYKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTL  229 (263)
Q Consensus       179 ~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~  229 (263)
                      +.++.+|+.+++. .++.++...|....    |+. +++++|.+..++...+
T Consensus       319 F~~c~~L~~l~lp~~l~~I~~~aF~~~~----L~~-l~l~~n~~~~l~~~~F  365 (401)
T 4fdw_A          319 LGGNRKVTQLTIPANVTQINFSAFNNTG----IKE-VKVEGTTPPQVFEKVW  365 (401)
T ss_dssp             TTTCCSCCEEEECTTCCEECTTSSSSSC----CCE-EEECCSSCCBCCCSSC
T ss_pred             hcCCCCccEEEECccccEEcHHhCCCCC----CCE-EEEcCCCCcccccccc
Confidence            4555666666666 66666555554333    666 6666666555555444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.17  E-value=1.8e-10  Score=99.63  Aligned_cols=61  Identities=7%  Similarity=-0.010  Sum_probs=48.6

Q ss_pred             cccccCCcceeccc-cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCc
Q psy3787         178 DKYKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRP  244 (263)
Q Consensus       178 ~~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~  244 (263)
                      .+.++++|+.+++. .++.++...|....   +|+. +.+..| ++.|+..++... ++..+.+.+|.
T Consensus       295 aF~~c~~L~~l~l~~~i~~I~~~aF~~c~---~L~~-l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          295 CLEGCPKLARFEIPESIRILGQGLLGGNR---KVTQ-LTIPAN-VTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             TTTTCTTCCEECCCTTCCEECTTTTTTCC---SCCE-EEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred             HhhCCccCCeEEeCCceEEEhhhhhcCCC---CccE-EEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence            47788899999999 88888887776543   6998 999655 888888888777 78888887764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.17  E-value=1.4e-10  Score=98.29  Aligned_cols=103  Identities=23%  Similarity=0.270  Sum_probs=66.8

Q ss_pred             EEEecCC-CCCCCcCCCCCCCCcEEEecC-CCCCCCchhhhhCCCCccEEEeecCcCccccc-cccCCCCcCEEEccCCc
Q psy3787          31 ELNLSYN-QLTMLPVCTDCKNLTHLLLGF-NKINNMENDYFLTLTKLSLLNLKNNKISEVSS-NVGDLINLAILDLSDNE  107 (263)
Q Consensus        31 ~L~l~~n-~l~~l~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~n~  107 (263)
                      .++++++ .++.+|.+..+.+|+.|++++ |.+..+++..|..+++|+.|++++|+++.++. .+..+++|+.|++++|.
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            4566665 666666666666677777764 67776666666677777777777777775543 45667777777777777


Q ss_pred             CCCccccccCCCcccEEEecCCCCCC
Q psy3787         108 LTDVPCELSSLFHLKSLFLGGNPIKT  133 (263)
Q Consensus       108 l~~l~~~~~~l~~L~~L~l~~n~l~~  133 (263)
                      ++.+|..+.....|+.|++.+|.+..
T Consensus        92 l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           92 LESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             cceeCHHHcccCCceEEEeeCCCccC
Confidence            77665543222237777777776665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.16  E-value=1.6e-11  Score=111.16  Aligned_cols=130  Identities=18%  Similarity=0.175  Sum_probs=59.7

Q ss_pred             CCCCEEEeecCccCCCC---ccc-cCCCCCCcEEEecCCCCCCCc------CCCCCCCCcEEEecCCCCCCCchhhhhCC
Q psy3787           3 SHLKTLDLSHNKLVSDS---LPL-FIDMRSLTELNLSYNQLTMLP------VCTDCKNLTHLLLGFNKINNMENDYFLTL   72 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~---~~~-~~~l~~L~~L~l~~n~l~~l~------~~~~~~~L~~L~l~~n~~~~~~~~~~~~l   72 (263)
                      ++|++|++++|.+....   ++. +..+++|+.|++++|.++.+.      .+..+++|+.|++++|.+.+++ ..+..+
T Consensus       164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~  242 (592)
T 3ogk_B          164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAA  242 (592)
T ss_dssp             TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHC
T ss_pred             CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhh
Confidence            44555555555443321   111 334445555555555444211      1233455555555555444432 334444


Q ss_pred             CCccEEEeecCcCc----cccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCC
Q psy3787          73 TKLSLLNLKNNKIS----EVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKT  133 (263)
Q Consensus        73 ~~L~~L~l~~~~l~----~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~  133 (263)
                      ++|+.++++.....    ..+..+..+.+|+.++++++....+|..+..+++|+.|++++|.++.
T Consensus       243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~  307 (592)
T 3ogk_B          243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET  307 (592)
T ss_dssp             TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH
T ss_pred             hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH
Confidence            55555555432111    11223344444555555444344455556666677777777766443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=1.2e-10  Score=98.74  Aligned_cols=101  Identities=27%  Similarity=0.233  Sum_probs=89.1

Q ss_pred             EEEeecC-ccCCCCccccCCCCCCcEEEecC-CCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec
Q psy3787           7 TLDLSHN-KLVSDSLPLFIDMRSLTELNLSY-NQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN   82 (263)
Q Consensus         7 ~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~   82 (263)
                      .++++++ .++.  +|.+..+++|+.|+|++ |.+..++  .|..+++|+.|++++|.+.++++..|..+++|+.|++++
T Consensus        12 ~v~~~~~n~l~~--ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS--LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT--TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc--cCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            5688887 8887  66688899999999996 9999877  489999999999999999999999999999999999999


Q ss_pred             CcCccccccccCCCCcCEEEccCCcCC
Q psy3787          83 NKISEVSSNVGDLINLAILDLSDNELT  109 (263)
Q Consensus        83 ~~l~~lp~~~~~l~~L~~L~l~~n~l~  109 (263)
                      |+++.+|..+.....|+.|++.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CccceeCHHHcccCCceEEEeeCCCcc
Confidence            999999876544444999999999887

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.15  E-value=1.8e-11  Score=110.76  Aligned_cols=129  Identities=13%  Similarity=0.132  Sum_probs=63.8

Q ss_pred             CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEec---------------------------CCCCCCCcC-CCCCCCCc
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLS---------------------------YNQLTMLPV-CTDCKNLT   52 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~---------------------------~n~l~~l~~-~~~~~~L~   52 (263)
                      +++|++|++++|.+..  ++. +.++++|+.|+++                           ++....+|. +..+++|+
T Consensus       219 ~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~  296 (592)
T 3ogk_B          219 CRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR  296 (592)
T ss_dssp             CTTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred             CCCCcEEeccCccHHH--HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence            4567777777766544  333 4444444444444                           332223332 34456666


Q ss_pred             EEEecCCCCCCCch-hhhhCCCCccEEEeecCcCc--cccccccCCCCcCEEEccC-----------CcCCC--cccccc
Q psy3787          53 HLLLGFNKINNMEN-DYFLTLTKLSLLNLKNNKIS--EVSSNVGDLINLAILDLSD-----------NELTD--VPCELS  116 (263)
Q Consensus        53 ~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~-----------n~l~~--l~~~~~  116 (263)
                      +|++++|.++.... ..+..+++|+.|+++ +.+.  .++.....+++|++|++++           +.++.  ++....
T Consensus       297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~  375 (592)
T 3ogk_B          297 KLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ  375 (592)
T ss_dssp             EEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred             EEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence            66776666543222 224556666666666 2222  2233334455566666662           34431  222233


Q ss_pred             CCCcccEEEecCCCCCC
Q psy3787         117 SLFHLKSLFLGGNPIKT  133 (263)
Q Consensus       117 ~l~~L~~L~l~~n~l~~  133 (263)
                      .+++|+.|++..|.++.
T Consensus       376 ~~~~L~~L~l~~~~l~~  392 (592)
T 3ogk_B          376 GCQELEYMAVYVSDITN  392 (592)
T ss_dssp             HCTTCSEEEEEESCCCH
T ss_pred             hCccCeEEEeecCCccH
Confidence            45566666665555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.05  E-value=4.7e-12  Score=114.63  Aligned_cols=128  Identities=18%  Similarity=0.155  Sum_probs=79.4

Q ss_pred             CCCCCEEEeecCccC-CCCc-------------cc-cCCCCCCcEEEecCCCCCCC--cCCC-CCCCCcEEEecCC-CCC
Q psy3787           2 LSHLKTLDLSHNKLV-SDSL-------------PL-FIDMRSLTELNLSYNQLTML--PVCT-DCKNLTHLLLGFN-KIN   62 (263)
Q Consensus         2 l~~L~~L~l~~n~~~-~~~~-------------~~-~~~l~~L~~L~l~~n~l~~l--~~~~-~~~~L~~L~l~~n-~~~   62 (263)
                      +++|+.|+++++... ....             +. ...+++|+.|++++|.++..  ..+. .+++|++|++++| .++
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence            567888888886421 1111             11 34577888888888877632  1232 4678888888887 444


Q ss_pred             CC-chhhhhCCCCccEEEeecCcCcc-----ccccccCCCCcCEEEccCCc--CC--CccccccCCCcccEEEecCC
Q psy3787          63 NM-ENDYFLTLTKLSLLNLKNNKISE-----VSSNVGDLINLAILDLSDNE--LT--DVPCELSSLFHLKSLFLGGN  129 (263)
Q Consensus        63 ~~-~~~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~n~--l~--~l~~~~~~l~~L~~L~l~~n  129 (263)
                      .. .+..+..+++|++|++++|.++.     ++.....+++|+.|+++++.  +.  .++..+..+++|+.|++++|
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            32 23334467888888888887653     22333466788888888775  22  12222345678888888877

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.02  E-value=1.5e-11  Score=111.38  Aligned_cols=40  Identities=5%  Similarity=0.032  Sum_probs=21.0

Q ss_pred             cccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCccc
Q psy3787         180 YKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLD  222 (263)
Q Consensus       180 ~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~  222 (263)
                      ..+++|++|+++  .++..  .+......+++|+. |++++|+++
T Consensus       478 ~~~~~L~~L~L~~n~~~~~--~~~~~~~~l~~L~~-L~l~~~~~~  519 (594)
T 2p1m_B          478 SGCDSLRKLEIRDCPFGDK--ALLANASKLETMRS-LWMSSCSVS  519 (594)
T ss_dssp             HHCTTCCEEEEESCSCCHH--HHHHTGGGGGGSSE-EEEESSCCB
T ss_pred             hcCCCcCEEECcCCCCcHH--HHHHHHHhCCCCCE-EeeeCCCCC
Confidence            446777777777  44221  11111122345777 777777663

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.01  E-value=2.2e-11  Score=104.40  Aligned_cols=137  Identities=18%  Similarity=0.154  Sum_probs=106.0

Q ss_pred             CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--C----C-CCCCCCcEEEecCCCCCCCc----hhhhh
Q psy3787           3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--V----C-TDCKNLTHLLLGFNKINNME----NDYFL   70 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~----~-~~~~~L~~L~l~~n~~~~~~----~~~~~   70 (263)
                      ++|++|++++|.++...+.. ...+++|+.|++++|.++...  .    + ...++|++|++++|.++...    ..++.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            57999999999987633444 345678999999999997432  1    2 34678999999999987533    33357


Q ss_pred             CCCCccEEEeecCcCcc-----ccccccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCCcchHHH
Q psy3787          71 TLTKLSLLNLKNNKISE-----VSSNVGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKTVRNDIL  139 (263)
Q Consensus        71 ~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~  139 (263)
                      ..++|++|++++|.++.     ++..+...++|++|++++|.++.     ++..+...++|+.|++++|.|+......+
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            78999999999999983     35566777899999999999984     34456678899999999999887554433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.56  E-value=2.2e-07  Score=79.12  Aligned_cols=127  Identities=15%  Similarity=0.070  Sum_probs=76.9

Q ss_pred             CCCEEEeecCccC-CCC---c----cccCCCCCCcEEEecCCCCC----------CCcC-CCCCCCCcEEEecCCCCCCC
Q psy3787           4 HLKTLDLSHNKLV-SDS---L----PLFIDMRSLTELNLSYNQLT----------MLPV-CTDCKNLTHLLLGFNKINNM   64 (263)
Q Consensus         4 ~L~~L~l~~n~~~-~~~---~----~~~~~l~~L~~L~l~~n~l~----------~l~~-~~~~~~L~~L~l~~n~~~~~   64 (263)
                      .++.|.+....+. ...   +    .+...+++|+.|.+......          .+.. +..+++|+.|.++++.-...
T Consensus       108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l  187 (362)
T 2ra8_A          108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI  187 (362)
T ss_dssp             GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC
T ss_pred             hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee
Confidence            4667777765555 211   1    11445778888888664321          1211 34568899999988732233


Q ss_pred             chhhhhCCCCccEEEeecCcCcc-ccccc--cCCCCcCEEEccC--Cc------CCCccccc--cCCCcccEEEecCCCC
Q psy3787          65 ENDYFLTLTKLSLLNLKNNKISE-VSSNV--GDLINLAILDLSD--NE------LTDVPCEL--SSLFHLKSLFLGGNPI  131 (263)
Q Consensus        65 ~~~~~~~l~~L~~L~l~~~~l~~-lp~~~--~~l~~L~~L~l~~--n~------l~~l~~~~--~~l~~L~~L~l~~n~l  131 (263)
                      ++  + .+++|+.|++..|.+.. ....+  ..+++|+.|+++.  +.      +..+...+  ..+++|+.|++.+|.+
T Consensus       188 ~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i  264 (362)
T 2ra8_A          188 GK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE  264 (362)
T ss_dssp             CS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred             cc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence            32  3 37889999998888762 22223  3678899998753  21      21222223  3578999999998876


Q ss_pred             CC
Q psy3787         132 KT  133 (263)
Q Consensus       132 ~~  133 (263)
                      ..
T Consensus       265 ~~  266 (362)
T 2ra8_A          265 QN  266 (362)
T ss_dssp             HH
T ss_pred             ch
Confidence            53

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.49  E-value=5.2e-08  Score=75.01  Aligned_cols=111  Identities=14%  Similarity=0.079  Sum_probs=88.0

Q ss_pred             cCCCCCCcEEEecCC-CCCCC-----c-CCCCCCCCcEEEecCCCCCCCc----hhhhhCCCCccEEEeecCcCcc----
Q psy3787          23 FIDMRSLTELNLSYN-QLTML-----P-VCTDCKNLTHLLLGFNKINNME----NDYFLTLTKLSLLNLKNNKISE----   87 (263)
Q Consensus        23 ~~~l~~L~~L~l~~n-~l~~l-----~-~~~~~~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~~~l~~----   87 (263)
                      +...+.|+.|++++| .+..-     . .+...++|++|++++|.++...    ...+...+.|++|++++|.++.    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            667899999999999 88731     1 3566789999999999987532    3445566889999999999983    


Q ss_pred             -ccccccCCCCcCEEEc--cCCcCCC-----ccccccCCCcccEEEecCCCCCC
Q psy3787          88 -VSSNVGDLINLAILDL--SDNELTD-----VPCELSSLFHLKSLFLGGNPIKT  133 (263)
Q Consensus        88 -lp~~~~~l~~L~~L~l--~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~  133 (263)
                       +...+...+.|++|++  ++|.++.     +...+...++|+.|++++|.+..
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence             5667777888999999  8899984     44557778899999999997654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=4.5e-08  Score=75.36  Aligned_cols=108  Identities=10%  Similarity=0.074  Sum_probs=84.9

Q ss_pred             CCCCCEEEeecC-ccCCCCccc----cCCCCCCcEEEecCCCCCCC-----c-CCCCCCCCcEEEecCCCCCCCc----h
Q psy3787           2 LSHLKTLDLSHN-KLVSDSLPL----FIDMRSLTELNLSYNQLTML-----P-VCTDCKNLTHLLLGFNKINNME----N   66 (263)
Q Consensus         2 l~~L~~L~l~~n-~~~~~~~~~----~~~l~~L~~L~l~~n~l~~l-----~-~~~~~~~L~~L~l~~n~~~~~~----~   66 (263)
                      .++|++|++++| .+....+..    +...++|++|++++|.+..-     . .+...++|++|++++|.++...    .
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            467999999999 887633333    67789999999999999832     1 2455678999999999998532    4


Q ss_pred             hhhhCCCCccEEEe--ecCcCcc-----ccccccCCCCcCEEEccCCcCC
Q psy3787          67 DYFLTLTKLSLLNL--KNNKISE-----VSSNVGDLINLAILDLSDNELT  109 (263)
Q Consensus        67 ~~~~~l~~L~~L~l--~~~~l~~-----lp~~~~~l~~L~~L~l~~n~l~  109 (263)
                      .++...+.|++|++  ++|.++.     +...+...+.|++|+++.|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            44667789999999  8899983     4556667788999999999875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.25  E-value=6.1e-07  Score=76.35  Aligned_cols=153  Identities=16%  Similarity=0.108  Sum_probs=96.6

Q ss_pred             CCCCCEEEeecCccCC--------CCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhh--
Q psy3787           2 LSHLKTLDLSHNKLVS--------DSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFL--   70 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~--------~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~--   70 (263)
                      +++|+.|.+.......        ..++. +..+|+|+.|+++++.-..++.+. .++|+.|++..+.+.......+.  
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~  216 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGS  216 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHc
Confidence            5789999887654321        01333 677899999999988422334443 78999999998887643333343  


Q ss_pred             CCCCccEEEeecC--c------Cccccccc--cCCCCcCEEEccCCcCCC-cccc---ccCCCcccEEEecCCCCCCcch
Q psy3787          71 TLTKLSLLNLKNN--K------ISEVSSNV--GDLINLAILDLSDNELTD-VPCE---LSSLFHLKSLFLGGNPIKTVRN  136 (263)
Q Consensus        71 ~l~~L~~L~l~~~--~------l~~lp~~~--~~l~~L~~L~l~~n~l~~-l~~~---~~~l~~L~~L~l~~n~l~~~~~  136 (263)
                      .+++|+.|+++.+  .      +..+...+  ..+++|++|++++|.+.. .+..   ...++.|+.|+++.|.+.....
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            6889999998632  1      22222222  347889999999988863 2222   2357899999999998777443


Q ss_pred             HHHHhH---HHHhhhhhCCCCc
Q psy3787         137 DILQDS---KRIISHIKTSRLD  155 (263)
Q Consensus       137 ~~~~~~---~~~l~~l~~~~~~  155 (263)
                      ..+...   ...|+.|+++.+.
T Consensus       297 ~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          297 RLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             HHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHHhhcccCCcceEEECCCCc
Confidence            333221   3445556664444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.14  E-value=4.9e-06  Score=71.52  Aligned_cols=57  Identities=14%  Similarity=0.046  Sum_probs=29.2

Q ss_pred             ccccCCcceeccc-cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccc
Q psy3787         179 KYKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVY  240 (263)
Q Consensus       179 ~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~  240 (263)
                      +.++.+|+.+++. .++.+++..|....   +|+. +++..+ ++.|+..++.+..+|..+.+
T Consensus       316 F~~c~~L~~i~lp~~v~~I~~~aF~~c~---~L~~-i~lp~~-l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          316 FESCTSLVSIDLPYLVEEIGKRSFRGCT---SLSN-INFPLS-LRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             TTTCTTCCEECCCTTCCEECTTTTTTCT---TCCE-ECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred             hcCCCCCCEEEeCCcccEEhHHhccCCC---CCCE-EEECcc-ccEehHHHhhCCCCCCEEEE
Confidence            3445555555555 55555554444322   4665 666544 55555555544444444443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.11  E-value=1.2e-06  Score=66.42  Aligned_cols=85  Identities=11%  Similarity=0.088  Sum_probs=63.3

Q ss_pred             CCCCcEEEecCCCCC--CCcCCCCCCCCcEEEecCCC-CCCCchhhhhCC----CCccEEEeecC-cCccc-cccccCCC
Q psy3787          26 MRSLTELNLSYNQLT--MLPVCTDCKNLTHLLLGFNK-INNMENDYFLTL----TKLSLLNLKNN-KISEV-SSNVGDLI   96 (263)
Q Consensus        26 l~~L~~L~l~~n~l~--~l~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~l~~~-~l~~l-p~~~~~l~   96 (263)
                      --.|+.||+++|.++  .+..+..+++|++|++++|. ++...-..+..+    ++|++|++++| +++.- -..+..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            347999999999987  34567889999999999985 765444445554    36999999998 57732 22356789


Q ss_pred             CcCEEEccCCc-CCC
Q psy3787          97 NLAILDLSDNE-LTD  110 (263)
Q Consensus        97 ~L~~L~l~~n~-l~~  110 (263)
                      +|++|+++++. ++.
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            99999999984 554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.09  E-value=3.3e-06  Score=68.54  Aligned_cols=79  Identities=29%  Similarity=0.244  Sum_probs=57.7

Q ss_pred             CCCCCCcEEEecCCCCCCCcCC----CCCCCCcEEEecCCCCCCCch-hhhhCCCCccEEEeecCcCc-cccc-------
Q psy3787          24 IDMRSLTELNLSYNQLTMLPVC----TDCKNLTHLLLGFNKINNMEN-DYFLTLTKLSLLNLKNNKIS-EVSS-------   90 (263)
Q Consensus        24 ~~l~~L~~L~l~~n~l~~l~~~----~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~l~-~lp~-------   90 (263)
                      .++++|+.|+|++|.++.++.+    ..+++|+.|++++|.+.+... ..+..+ +|++|++++|.+. .+|.       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            4688899999999998876643    368899999999999887622 223333 8999999999887 3442       


Q ss_pred             cccCCCCcCEEEc
Q psy3787          91 NVGDLINLAILDL  103 (263)
Q Consensus        91 ~~~~l~~L~~L~l  103 (263)
                      .+..+++|+.|+-
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            2566788888763

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.08  E-value=2.2e-05  Score=67.45  Aligned_cols=191  Identities=14%  Similarity=0.157  Sum_probs=105.7

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCC-------------------
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK-------------------   60 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~-------------------   60 (263)
                      +++|+.+.+.++- ......+|.++.+|+.+.+..+ +..++  .+..+..|+.+.+..+.                   
T Consensus       161 c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip  238 (394)
T 4fs7_A          161 CESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIP  238 (394)
T ss_dssp             CTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEEC
T ss_pred             cCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEEC
Confidence            4678888887653 3312223888899999888765 44333  35555555554443332                   


Q ss_pred             --CCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHH
Q psy3787          61 --INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDI  138 (263)
Q Consensus        61 --~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~  138 (263)
                        +..+...++..+..++.+.+..+..+--...+..+..++.+......+.  ...+..+.+|+.+.+..+ ++.++...
T Consensus       239 ~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~a  315 (394)
T 4fs7_A          239 DSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEA  315 (394)
T ss_dssp             TTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred             CCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec--cccccccccccccccccc-cceechhh
Confidence              1222333444455555555544432222223444555555544433221  123566777777777653 55666555


Q ss_pred             HHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccc-cccccccCCcceeccc-cccccChhHHhhcCCccceeEEEec
Q psy3787         139 LQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEI-NIDKYKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINI  216 (263)
Q Consensus       139 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~l  216 (263)
                      +... ..|+.+.+...                 ...+ ...+.++.+|+.+.+. .++.+++..|....   +|+. +++
T Consensus       316 F~~c-~~L~~i~lp~~-----------------v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~---~L~~-i~l  373 (394)
T 4fs7_A          316 FESC-TSLVSIDLPYL-----------------VEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCI---NLKK-VEL  373 (394)
T ss_dssp             TTTC-TTCCEECCCTT-----------------CCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCT---TCCE-EEE
T ss_pred             hcCC-CCCCEEEeCCc-----------------ccEEhHHhccCCCCCCEEEECccccEehHHHhhCCC---CCCE-EEE
Confidence            4432 12333333110                 1112 2247788999999999 88888887776544   7998 998


Q ss_pred             cCC
Q psy3787         217 DKY  219 (263)
Q Consensus       217 s~n  219 (263)
                      ..+
T Consensus       374 p~~  376 (394)
T 4fs7_A          374 PKR  376 (394)
T ss_dssp             EGG
T ss_pred             CCC
Confidence            755

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.05  E-value=3.6e-05  Score=66.02  Aligned_cols=61  Identities=8%  Similarity=0.066  Sum_probs=44.3

Q ss_pred             ccccCCcceeccc-cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCc
Q psy3787         179 KYKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRP  244 (263)
Q Consensus       179 ~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~  244 (263)
                      +.++.+|+.+++. .++.+++..|....   +|+. +.+..+ ++.|...++.+..+|..+.+.++.
T Consensus       307 F~~c~~L~~i~lp~~v~~I~~~aF~~C~---~L~~-i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          307 FAGCISLKSIDIPEGITQILDDAFAGCE---QLER-IAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTCTTCCEEECCTTCCEECTTTTTTCT---TCCE-EEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             ecCCCCcCEEEeCCcccEehHhHhhCCC---CCCE-EEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            5677888888888 78888777666533   6887 888654 778887777777777777776654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.05  E-value=2.1e-05  Score=67.49  Aligned_cols=57  Identities=11%  Similarity=0.181  Sum_probs=39.6

Q ss_pred             ccccCCcceeccc-cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccc
Q psy3787         179 KYKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVY  240 (263)
Q Consensus       179 ~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~  240 (263)
                      +..++.|+.+.+. .++.+++..|....   +|+. +++..+ ++.|...++.+..+|..+.+
T Consensus       284 F~~c~~L~~i~l~~~i~~I~~~aF~~c~---~L~~-i~lp~~-v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          284 FMNCPALQDIEFSSRITELPESVFAGCI---SLKS-IDIPEG-ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             TTTCTTCCEEECCTTCCEECTTTTTTCT---TCCE-EECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             cccccccccccCCCcccccCceeecCCC---CcCE-EEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence            4567788888888 88888887776543   6888 888754 77777766655455544433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.86  E-value=1.7e-05  Score=64.36  Aligned_cols=100  Identities=20%  Similarity=0.254  Sum_probs=72.3

Q ss_pred             CCCCCcE--EEecCCCCCCCcC-----CCCCCCCcEEEecCCCCCCCch--hhhhCCCCccEEEeecCcCccccc--ccc
Q psy3787          25 DMRSLTE--LNLSYNQLTMLPV-----CTDCKNLTHLLLGFNKINNMEN--DYFLTLTKLSLLNLKNNKISEVSS--NVG   93 (263)
Q Consensus        25 ~l~~L~~--L~l~~n~l~~l~~-----~~~~~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~--~~~   93 (263)
                      ..+.|..  ++++.|....++.     ...+++|+.|++++|.+.++.+  ..+..+++|+.|++++|+++.+..  .+.
T Consensus       139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~  218 (267)
T 3rw6_A          139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK  218 (267)
T ss_dssp             GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT
T ss_pred             CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc
Confidence            3344444  5666775443331     2457899999999999998653  556789999999999999997632  234


Q ss_pred             CCCCcCEEEccCCcCCC-cc-------ccccCCCcccEEE
Q psy3787          94 DLINLAILDLSDNELTD-VP-------CELSSLFHLKSLF  125 (263)
Q Consensus        94 ~l~~L~~L~l~~n~l~~-l~-------~~~~~l~~L~~L~  125 (263)
                      .+ +|++|++++|.+.. +|       ..+..+++|+.|+
T Consensus       219 ~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          219 GL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             cC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            44 89999999999873 43       2367888898875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.78  E-value=2.2e-05  Score=59.39  Aligned_cols=87  Identities=20%  Similarity=0.200  Sum_probs=65.4

Q ss_pred             CCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCc-Cccc-cccccCC----CCcCEEEccCC-cCCCc-cccccCC
Q psy3787          47 DCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK-ISEV-SSNVGDL----INLAILDLSDN-ELTDV-PCELSSL  118 (263)
Q Consensus        47 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l-p~~~~~l----~~L~~L~l~~n-~l~~l-~~~~~~l  118 (263)
                      .-..|++||++++.++...-..+..+++|++|++++|. ++.- -..+..+    ++|++|++++| .++.- -..+..+
T Consensus        59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            34579999999999887666668899999999999994 6622 2223433    47999999998 47742 1246789


Q ss_pred             CcccEEEecCCC-CCC
Q psy3787         119 FHLKSLFLGGNP-IKT  133 (263)
Q Consensus       119 ~~L~~L~l~~n~-l~~  133 (263)
                      ++|++|++++++ ++.
T Consensus       139 ~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TTCCEEEEESCTTCCC
T ss_pred             CCCCEEECCCCCCCCc
Confidence            999999999985 443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.69  E-value=0.00018  Score=61.19  Aligned_cols=81  Identities=17%  Similarity=0.179  Sum_probs=34.5

Q ss_pred             CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccc-cccCCCCcCEEEccCCcCCCccc-cccCCCccc
Q psy3787          45 CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSS-NVGDLINLAILDLSDNELTDVPC-ELSSLFHLK  122 (263)
Q Consensus        45 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~  122 (263)
                      +..+..|+.+.+..+ ++.+...+|..+.+++.+.+.. +++.++. .+..+.+|+.+.+.++.++.++. +|..+.+|+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence            344444444444433 3333444444444444444432 2333322 23444444444444444444422 244444444


Q ss_pred             EEEec
Q psy3787         123 SLFLG  127 (263)
Q Consensus       123 ~L~l~  127 (263)
                      .+.+.
T Consensus       314 ~i~lp  318 (379)
T 4h09_A          314 SVTLP  318 (379)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            44443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.51  E-value=0.0015  Score=55.52  Aligned_cols=159  Identities=14%  Similarity=0.192  Sum_probs=107.0

Q ss_pred             cCCCCCCcEEEecCCCCC-CCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccc-cccCCCCcCE
Q psy3787          23 FIDMRSLTELNLSYNQLT-MLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSS-NVGDLINLAI  100 (263)
Q Consensus        23 ~~~l~~L~~L~l~~n~l~-~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~  100 (263)
                      +.....+..+.+...... .-..+..+..++.+.+..+ +..+...++..+..|+.+.+..+ ++.+.. .+..+.+|+.
T Consensus       190 ~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~  267 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT  267 (379)
T ss_dssp             CCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             ccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence            445556666655544322 1224666778888877654 56666777888999999999765 666654 4678889999


Q ss_pred             EEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccc
Q psy3787         101 LDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK  179 (263)
Q Consensus       101 L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (263)
                      +.+..+ +..++. .|..+.+|+.+.+.++.++.++...                                        +
T Consensus       268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a----------------------------------------F  306 (379)
T 4h09_A          268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV----------------------------------------F  306 (379)
T ss_dssp             EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTT----------------------------------------T
T ss_pred             cccccc-ceeccccccccccccccccccccccceehhhh----------------------------------------h
Confidence            998654 666654 5889999999999887777665432                                        4


Q ss_pred             cccCCcceeccc-cccccChhHHhhcCCccceeEEEeccCCcccccCcccc
Q psy3787         180 YKLDRTKTLTLC-KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTL  229 (263)
Q Consensus       180 ~~~~~L~~L~l~-~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~  229 (263)
                      .++.+|+.+.+. .++.+++..|....   +|+. +.+..+ ++.|...++
T Consensus       307 ~~c~~L~~i~lp~~l~~I~~~aF~~C~---~L~~-i~ip~~-v~~I~~~aF  352 (379)
T 4h09_A          307 MDCVKLSSVTLPTALKTIQVYAFKNCK---ALST-ISYPKS-ITLIESGAF  352 (379)
T ss_dssp             TTCTTCCEEECCTTCCEECTTTTTTCT---TCCC-CCCCTT-CCEECTTTT
T ss_pred             cCCCCCCEEEcCccccEEHHHHhhCCC---CCCE-EEECCc-cCEEchhHh
Confidence            555667777776 67777666555433   5776 777544 666655544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.25  E-value=0.00029  Score=54.30  Aligned_cols=108  Identities=13%  Similarity=0.110  Sum_probs=74.8

Q ss_pred             cCCCCCCcEEEecCC-CCCCC------cCCCCCCCCcEEEecCCCCCCC----chhhhhCCCCccEEEeecCcCc-----
Q psy3787          23 FIDMRSLTELNLSYN-QLTML------PVCTDCKNLTHLLLGFNKINNM----ENDYFLTLTKLSLLNLKNNKIS-----   86 (263)
Q Consensus        23 ~~~l~~L~~L~l~~n-~l~~l------~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~l~-----   86 (263)
                      +.+-+.|+.|+++++ .|..-      ..+..-.+|+.|++++|.++..    ...++.....|++|++++|.|+     
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            455678888888885 66621      1345567888889988888743    3344556678889999988887     


Q ss_pred             cccccccCCCCcCEEEccCC---cCCC-----ccccccCCCcccEEEecCCC
Q psy3787          87 EVSSNVGDLINLAILDLSDN---ELTD-----VPCELSSLFHLKSLFLGGNP  130 (263)
Q Consensus        87 ~lp~~~~~l~~L~~L~l~~n---~l~~-----l~~~~~~l~~L~~L~l~~n~  130 (263)
                      .+.+.+..-+.|++|+++++   .+..     +...+..-+.|..++++.|.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            34556666677889988765   3442     34456677788888887664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.24  E-value=0.0004  Score=53.47  Aligned_cols=65  Identities=15%  Similarity=0.179  Sum_probs=40.0

Q ss_pred             hCCCCccEEEeecC-cCc-----cccccccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCCc
Q psy3787          70 LTLTKLSLLNLKNN-KIS-----EVSSNVGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKTV  134 (263)
Q Consensus        70 ~~l~~L~~L~l~~~-~l~-----~lp~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~  134 (263)
                      ...+.|++|+++++ .+.     .+.+.+..-..|+.|++++|.+..     +...+...+.|+.|+++.|.|..-
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            34456666666664 554     234455556667777777777762     344455666777777777766643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.87  E-value=0.0026  Score=45.54  Aligned_cols=56  Identities=23%  Similarity=0.198  Sum_probs=39.5

Q ss_pred             cEEEecCCCCC--CCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCc
Q psy3787          30 TELNLSYNQLT--MLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKIS   86 (263)
Q Consensus        30 ~~L~l~~n~l~--~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~   86 (263)
                      ..++.+++.++  .+|.- -..++++|++++|.++.+++..|..+++|+.|++++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36677777776  66631 1235777888888888777777777777888888777665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.80  E-value=0.0022  Score=45.89  Aligned_cols=55  Identities=25%  Similarity=0.444  Sum_probs=41.1

Q ss_pred             cEEEeecCcCc--cccccccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCC
Q psy3787          76 SLLNLKNNKIS--EVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIK  132 (263)
Q Consensus        76 ~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~  132 (263)
                      ..++.++++++  .+|..+.  .++++|++++|.|+.++.. |..+++|+.|++.+|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            35677777777  7776543  4578888888888888654 677888888888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	263
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.0 bits (144), Expect = 5e-11
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 24/152 (15%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKIN 62
           ++L  L L+ N+L    +     + +LT+L+L+ NQ++ L   +    LT L LG N+I+
Sbjct: 219 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 276

Query: 63  NMENDYFLT--------------------LTKLSLLNLKNNKISEVSSNVGDLINLAILD 102
           N+     LT                    L  L+ L L  N IS++S  V  L  L  L 
Sbjct: 277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLF 335

Query: 103 LSDNELTDVPCELSSLFHLKSLFLGGNPIKTV 134
            ++N+++DV   L++L ++  L  G N I  +
Sbjct: 336 FANNKVSDVS-SLANLTNINWLSAGHNQISDL 366

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.9 bits (141), Expect = 9e-11
 Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 6/128 (4%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L+ L  L L  N++   ++     + +LT L L+ NQL  +   ++ KNLT+L L FN I
Sbjct: 262 LTKLTELKLGANQI--SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 319

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
           +++      +LTKL  L   NNK+S+VSS + +L N+  L    N+++D+   L++L  +
Sbjct: 320 SDISP--VSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQISDLT-PLANLTRI 375

Query: 122 KSLFLGGN 129
             L L   
Sbjct: 376 TQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.5 bits (122), Expect = 3e-08
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
            L +L  L L  N +    +     +  L  L  + N+++ +    +  N+  L  G N+
Sbjct: 305 NLKNLTYLTLYFNNI--SDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQ 362

Query: 61  INNMENDYFLTLTKLSLLNLKNN 83
           I+++       LT+++ L L + 
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L  + TL      +   S+     + +LT++N S NQLT +    +   L  +L+  N+I
Sbjct: 43  LDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 62  NNMENDYF 69
            ++     
Sbjct: 101 ADITPLAN 108

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 25  DMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84
            +    +  L    +T     TD   +T L      I +++      L  L+ +N  NN+
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQ 77

Query: 85  ISEVSSNVGDLINLAILDLS 104
           +++++  + +L  L  + ++
Sbjct: 78  LTDITP-LKNLTKLVDILMN 96

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.5 bits (127), Expect = 6e-09
 Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 4/141 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFN 59
           L +L TL L +NK+   S   F  +  L  L LS NQL  LP  +    + L        
Sbjct: 54  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT 113

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLF 119
           K+     +    +  + L           +     +  L+ + ++D  +T +P  L    
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP-- 171

Query: 120 HLKSLFLGGNPIKTVRNDILQ 140
            L  L L GN I  V    L+
Sbjct: 172 SLTELHLDGNKITKVDAASLK 192

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 4e-08
 Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 12/141 (8%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCT--DCKNLTHLLLGFN 59
           +  L  + ++   + +    L     SLTEL+L  N++T +   +     NL  L L FN
Sbjct: 149 MKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 60  KINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVP------- 112
            I+ ++N        L  L+L NNK+ +V   + D   + ++ L +N ++ +        
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 113 CELSSLFHLKSLFLGGNPIKT 133
              +       + L  NP++ 
Sbjct: 266 GYNTKKASYSGVSLFSNPVQY 286

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 7e-07
 Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 2/156 (1%)

Query: 4   HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINN 63
            +  L  +  K        F  M+ L+ + ++   +T +P      +LT L L  NKI  
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITK 185

Query: 64  MENDYFLTLTKLSLLNLKNNKI-SEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLK 122
           ++      L  L+ L L  N I +  + ++ +  +L  L L++N+L  VP  L+   +++
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 245

Query: 123 SLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC 158
            ++L  N I  + ++              S +    
Sbjct: 246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.6 bits (104), Expect = 4e-06
 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 10/133 (7%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQL--TMLPVCTDCKNLTHLLLGF 58
           +   L  L L  NK+          + +L +L LS+N +         +  +L  L L  
Sbjct: 169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-------GDLINLAILDLSDNELTDV 111
           NK+  +          + ++ L NN IS + SN            + + + L  N +   
Sbjct: 229 NKLVKVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287

Query: 112 PCELSSLFHLKSL 124
             + S+   +   
Sbjct: 288 EIQPSTFRCVYVR 300

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 6e-06
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 7/143 (4%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNK 60
                LDL +NK+       F ++++L  L L  N+++ +          L  L L  N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 61  INNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFH 120
           +  +      TL +L +   +  K+ +  S    L  + +++L  N L     E  +   
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 121 LKSL---FLGGNPIKTVRNDILQ 140
           +K L    +    I T+   +  
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPP 171

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 7/119 (5%)

Query: 6   KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLPVCTDCKNLTHLLLGFNKINNM 64
           + L L+H  L    L     +  +T L+LS+N+L  + P     + L  L    N + N+
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 65  ENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDVPCELSSLFHL 121
           +    L   +   L L NN++ + +    +     L +L+L  N L         L  +
Sbjct: 59  DGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 2e-07
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 2/98 (2%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
           L  +  LDLSHN+L     P    +R L  L  S N L  +    +   L  LLL  N++
Sbjct: 19  LLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL 77

Query: 62  NNMEN-DYFLTLTKLSLLNLKNNKISEVSSNVGDLINL 98
                    ++  +L LLNL+ N + +       L  +
Sbjct: 78  QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 5e-07
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 4/102 (3%)

Query: 32  LNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSN 91
           L+L++  LT+L        +THL L  N++  +       L  L +L   +N +  V   
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGV 61

Query: 92  VGDLINLAILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPI 131
                 L  L L +N L        L S   L  L L GN +
Sbjct: 62  ANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 45  CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLS 104
            +    L   L   N  +N           L  LN+ NNK+ E+ +       L  L  S
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIAS 312

Query: 105 DNELTDVPCELSSLFHLKSLFLGGNPIKTV 134
            N L +VP    +   LK L +  NP++  
Sbjct: 313 FNHLAEVPELPQN---LKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 3e-07
 Identities = 25/113 (22%), Positives = 36/113 (31%), Gaps = 29/113 (25%)

Query: 10  LSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYF 69
              N   ++   L     SL ELN+S N+L  LP                          
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL------------------------ 302

Query: 70  LTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLK 122
               +L  L    N ++EV        NL  L +  N L + P    S+  L+
Sbjct: 303 --PPRLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 1e-06
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNK 60
           +   L+ L++S+NKL+     L      L  L  S+N L  +P     +NL  L + +N 
Sbjct: 282 LPPSLEELNVSNNKLIE----LPALPPRLERLIASFNHLAEVP--ELPQNLKQLHVEYNP 335

Query: 61  INNMENDYFLTLTKLSLLN 79
           +     D   ++  L + +
Sbjct: 336 LREFP-DIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 8e-04
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 3  SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKIN 62
               L+L++  L   SLP       L  L  S N LT LP     ++L  LL+  N + 
Sbjct: 38 RQAHELELNNLGL--SSLPELPP--HLESLVASCNSLTELP--ELPQSLKSLLVDNNNLK 91

Query: 63 NM 64
           +
Sbjct: 92 AL 93

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 5/135 (3%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKI 61
               + LDL   K+      L   +     ++ S N++  L      + L  LL+  N+I
Sbjct: 17  AVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRI 75

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEVS--SNVGDLINLAILDLSDNELTDVP-CELSSL 118
             +       L  L+ L L NN + E+     +  L +L  L +  N +T+     L  +
Sbjct: 76  CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI 135

Query: 119 FHLKSL-FLGGNPIK 132
           + +  +  L    +K
Sbjct: 136 YKVPQVRVLDFQKVK 150

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 69  FLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC 113
           +    +   L+L+  KI  + +    L     +D SDNE+  +  
Sbjct: 14  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 58

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 5e-06
 Identities = 45/135 (33%), Positives = 59/135 (43%), Gaps = 4/135 (2%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGF 58
            L  L TL L    L      LF  + +L  L L  N L  LP     D  NLTHL L  
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

Query: 59  NKINNMENDYFLTLTKLSLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDV-PCELS 116
           N+I+++    F  L  L  L L  N+++ V  +   DL  L  L L  N L+ +    L+
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 117 SLFHLKSLFLGGNPI 131
            L  L+ L L  NP 
Sbjct: 223 PLRALQYLRLNDNPW 237

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 7e-04
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 5/132 (3%)

Query: 4   HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKI 61
            L+ L L  N L +     F D+ +LT L L  N+++ +P        +L  LLL  N++
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 62  NNMENDYFLTLTKLSLLNLKNNKISEV-SSNVGDLINLAILDLSDNELTDVPCELSSLF- 119
            ++    F  L +L  L L  N +S + +  +  L  L  L L+DN      C    L+ 
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW-VCDCRARPLWA 248

Query: 120 HLKSLFLGGNPI 131
            L+      + +
Sbjct: 249 WLQKFRGSSSEV 260

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 1/120 (0%)

Query: 12  HNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLT 71
            N+L     P F ++                 V       T  +         +      
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242

Query: 72  LTKLSLLNLKNNKIS-EVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNP 130
              L+ L+L+NN+I   +   +  L  L  L++S N L     +  +L          N 
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 1   MLSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLT-MLPVCTDCKNLTHLLLGFN 59
           +  +L  LDL +N++          ++ L  LN+S+N L   +P   + +         N
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

Query: 60  K 60
           K
Sbjct: 302 K 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 2   LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQL---TMLPVCT 46
           L  L +L++S N L    +P   +++       + N+    + LP CT
Sbjct: 267 LKFLHSLNVSFNNL-CGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 2e-05
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 5  LKTLDLSHNKLVSDSLP-LFIDMRSLTELNLSYNQLT------MLPVCTDCKNLTHLLLG 57
          +++LD+   +L       L   ++    + L    LT      +         L  L L 
Sbjct: 4  IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 58 FNKINNMENDYFLTLTKLSLLNLKNNKIS 86
           N++ ++     L   +     ++   + 
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 41/176 (23%), Positives = 56/176 (31%), Gaps = 48/176 (27%)

Query: 3   SHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNL----------- 51
                L LS N L + SL   +    LT+LNL   +LT L V      L           
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 52  ------------------------------------THLLLGFNKINNMENDYFLTLTKL 75
                                                 L L  N++  +         KL
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 76  SLLNLKNNKISEVSSNV-GDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNP 130
             L+L NN ++E+ + +   L NL  L L +N L  +P        L   FL GNP
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 7e-04
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 28 SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK 84
          S  E+N     LT LP     K+ T L L  N +        +  T+L+ LNL   +
Sbjct: 11 SHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 5/112 (4%)

Query: 44  VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDL 103
           + T    L  L L  N +  +       L  L  L L+ N +  +         L    L
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202

Query: 104 SDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLD 155
             N      CE+         +L  N           D K + S++ + + D
Sbjct: 203 HGNPW-LCNCEILYFRR----WLQDNAENVYVWKQGVDVKAMTSNVASVQCD 249

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 6e-05
 Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 6/145 (4%)

Query: 9   DLSHNKLVSDSLPLFIDMR-SLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMEN- 66
           +L   ++  + L L +  R   ++  L    L   P          L    +    +   
Sbjct: 3   ELKPEQV--EQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRII 60

Query: 67  -DYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSL 124
            +    L  L+L N +  ++ ++SS V    NL IL+LS NEL      +      L+ L
Sbjct: 61  EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 120

Query: 125 FLGGNPIKTVRNDILQDSKRIISHI 149
           +L GN +     D       I    
Sbjct: 121 WLDGNSLSDTFRDQSTYISAIRERF 145

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 4   HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLL 56
            L TL    NK+    +     + +L E++L  NQ++ +    +  NL  + L
Sbjct: 174 KLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 23  FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN 82
             ++  LT L    N+++ +       NL  + L  N+I+++        + L ++ L N
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	263
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.81
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.81
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.8
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.77
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.74
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.63
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.58
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.55
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.3
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.21
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.11
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.05
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.0
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.99
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.28
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.22
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.94
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.86
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.83
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.6
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.03

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.5e-21  Score=155.54  Aligned_cols=191  Identities=24%  Similarity=0.271  Sum_probs=140.1

Q ss_pred             CCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           3 SHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      ..+.+.+.++++++.  +|+ +.  +++++|++++|.++.++  .|..+++|++|++++|.++.++.  +..+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~~--iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred             CCCeEEEccCCCCCe--eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--ccccccccccc
Confidence            455667888888876  664 42  57888888888888766  47788888888888888887654  45688888888


Q ss_pred             eecCcCccccccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccc
Q psy3787          80 LKNNKISEVSSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHC  158 (263)
Q Consensus        80 l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~  158 (263)
                      +++|+++..+..+..+++|+.++++++.+..++. .+..+.+++.+++++|.++.++...+... ..+..++++.+.+  
T Consensus        84 Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l-~~l~~l~l~~N~l--  160 (266)
T d1p9ag_          84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT-PKLEKLSLANNNL--  160 (266)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCC--
T ss_pred             cccccccccccccccccccccccccccccceeeccccccccccccccccccccceecccccccc-ccchhcccccccc--
Confidence            8888888877777888888888888888877643 46778888888888888888876654432 3455566655552  


Q ss_pred             cccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCc
Q psy3787         159 QNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYK  220 (263)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~  220 (263)
                                   ....+..+..+++|++|+++  +++.+|++++....    |+. |++++|+
T Consensus       161 -------------~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~----L~~-L~L~~Np  206 (266)
T d1p9ag_         161 -------------TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL----LPF-AFLHGNP  206 (266)
T ss_dssp             -------------SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCC----CSE-EECCSCC
T ss_pred             -------------cccCccccccccccceeecccCCCcccChhHCCCCC----CCE-EEecCCC
Confidence                         22223346677888888888  77888877776554    888 8888884

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.85  E-value=2.7e-21  Score=160.40  Aligned_cols=236  Identities=17%  Similarity=0.186  Sum_probs=177.3

Q ss_pred             CCCEEEeecCccCCC-Cccc-cCCCCCCcEEEecC-CCCC-CCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787           4 HLKTLDLSHNKLVSD-SLPL-FIDMRSLTELNLSY-NQLT-MLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL   78 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~-~~~~-~~~l~~L~~L~l~~-n~l~-~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L   78 (263)
                      +++.|+++++.+.+. .+|+ +.++++|++|++++ |.+. .+| .+..+++|++|++++|.+.+..+..+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            588899999998863 2455 99999999999997 7776 576 58999999999999999998888888999999999


Q ss_pred             EeecCcCc-cccccccCCCCcCEEEccCCcCC-CccccccCCCcc-cEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCc
Q psy3787          79 NLKNNKIS-EVSSNVGDLINLAILDLSDNELT-DVPCELSSLFHL-KSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLD  155 (263)
Q Consensus        79 ~l~~~~l~-~lp~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~  155 (263)
                      ++++|.+. .+|..+..++.++++++++|.+. .+|..+..+..+ +.+++++|.+++..+..+...  ....++.....
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l--~~~~l~l~~~~  208 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNM  208 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--CCSEEECCSSE
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc--ccccccccccc
Confidence            99999877 67889999999999999999988 578888887776 889999999887544333221  11123222222


Q ss_pred             cccc---------ccCCCCCCCcCCcccccccccccCCcceeccc--ccc-ccChhHHhhcCCccceeEEEeccCCccc-
Q psy3787         156 YHCQ---------NVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVI-NIPESVYMRGMSSQECTIEINIDKYKLD-  222 (263)
Q Consensus       156 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~-~l~~~~~~~~~~~~~L~~~L~ls~n~l~-  222 (263)
                      ..-.         .......... .....++.+..+++|+.|+++  +++ .+|+++..+.    +|+. |++++|+|+ 
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~-~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~----~L~~-L~Ls~N~l~g  282 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK----FLHS-LNVSFNNLCG  282 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT----TCCE-EECCSSEEEE
T ss_pred             ccccccccccccccccccccccc-cccccccccccccccccccCccCeecccCChHHhCCC----CCCE-EECcCCcccc
Confidence            1000         0000000000 023345568888999999999  776 8999887665    4999 999999999 


Q ss_pred             ccCccccccccccccccccCCceEEec
Q psy3787         223 RTKTLTLCKVINIPESVYMNRPFALTY  249 (263)
Q Consensus       223 ~ip~~~~~~~~~l~~~~~~~~~~~~~~  249 (263)
                      .+|..  ..+.++..+.+.||+.++..
T Consensus       283 ~iP~~--~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         283 EIPQG--GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             ECCCS--TTGGGSCGGGTCSSSEEEST
T ss_pred             cCCCc--ccCCCCCHHHhCCCccccCC
Confidence            78864  34678889999999977653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9e-21  Score=153.76  Aligned_cols=201  Identities=19%  Similarity=0.186  Sum_probs=164.5

Q ss_pred             cCCCCCCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEE
Q psy3787          23 FIDMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAIL  101 (263)
Q Consensus        23 ~~~l~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L  101 (263)
                      ......+..++.+++.++.+|. +.  +.+++|++++|.++++++.+|..+++|++|++++|+++.++. ++.+++|++|
T Consensus         6 ~~~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L   82 (266)
T d1p9ag_           6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTL   82 (266)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEE
T ss_pred             EcccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccc
Confidence            3456677788999999999884 42  579999999999999998889999999999999999998875 4678999999


Q ss_pred             EccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCccccc-cccc
Q psy3787         102 DLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEIN-IDKY  180 (263)
Q Consensus       102 ~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  180 (263)
                      ++++|.++.++..+..+++|+.+++++|.+.+++...+... ..+..+....+.                ...++ ..+.
T Consensus        83 ~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~l~~L~l~~n~----------------l~~l~~~~~~  145 (266)
T d1p9ag_          83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNE----------------LKTLPPGLLT  145 (266)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC-TTCCEEECTTSC----------------CCCCCTTTTT
T ss_pred             ccccccccccccccccccccccccccccccceeeccccccc-cccccccccccc----------------cceecccccc
Confidence            99999999888889999999999999999998776654432 345556665555                23333 3356


Q ss_pred             ccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCCceEEe
Q psy3787         181 KLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNRPFALT  248 (263)
Q Consensus       181 ~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~~~~~~  248 (263)
                      .++.++.++++  +++.++.+.+....   +|+. |++++|+|+.+|...+ +...+..+.+.|||+.+.
T Consensus       146 ~l~~l~~l~l~~N~l~~~~~~~~~~l~---~L~~-L~Ls~N~L~~lp~~~~-~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         146 PTPKLEKLSLANNNLTELPAGLLNGLE---NLDT-LLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             TCTTCCEEECTTSCCSCCCTTTTTTCT---TCCE-EECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCCS
T ss_pred             ccccchhcccccccccccCcccccccc---ccce-eecccCCCcccChhHC-CCCCCCEEEecCCCCCCC
Confidence            78999999999  88988877665433   7999 9999999999998655 467788899999998774

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.4e-19  Score=147.94  Aligned_cols=196  Identities=22%  Similarity=0.255  Sum_probs=100.6

Q ss_pred             CCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEec-CCCCCCCchhhhhCCCCccEE
Q psy3787           4 HLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLG-FNKINNMENDYFLTLTKLSLL   78 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~-~n~~~~~~~~~~~~l~~L~~L   78 (263)
                      ++++|++++|+++.  +++  |.++++|++|++++|.+..++  .+.....++.+... .+.+..+++..|+++++|+++
T Consensus        33 ~~~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          33 ASQRIFLHGNRISH--VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TCSEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEECcCCcCCC--CCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            34556666666555  332  555666666666666555443  23444555555432 334555555555556666666


Q ss_pred             EeecCcCccccc-cccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcc
Q psy3787          79 NLKNNKISEVSS-NVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDY  156 (263)
Q Consensus        79 ~l~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~  156 (263)
                      ++++|.+..++. .+....+|+.+++++|.++.+|. .+..++.|+.|++++|.++.+++..+... ..+..+.+..+.+
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l-~~L~~l~l~~N~l  189 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRV  189 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccc-cccchhhhhhccc
Confidence            666665554432 34445556666666666655532 35555566666666666655554433322 3344444433332


Q ss_pred             cccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcc
Q psy3787         157 HCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKL  221 (263)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l  221 (263)
                                     ....|..+..+++|++|+++  .+..++...+....   +|+. |++++|++
T Consensus       190 ---------------~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~---~L~~-L~l~~N~l  237 (284)
T d1ozna_         190 ---------------AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR---ALQY-LRLNDNPW  237 (284)
T ss_dssp             ---------------CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT---TCCE-EECCSSCE
T ss_pred             ---------------cccChhHhhhhhhccccccccccccccccccccccc---ccCE-EEecCCCC
Confidence                           22223445555556666665  55555544443222   4555 66666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.6e-19  Score=147.52  Aligned_cols=219  Identities=19%  Similarity=0.232  Sum_probs=176.3

Q ss_pred             EEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeec-
Q psy3787           7 TLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKN-   82 (263)
Q Consensus         7 ~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-   82 (263)
                      .++.++.+++.  +|. +.  +.+++|++++|.|+.+|  .|..++.|++|++++|.+..+++..+.....+..+.... 
T Consensus        15 ~v~c~~~~L~~--iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQA--VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCSS--CCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCCc--cCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            45677777776  665 32  57899999999999887  489999999999999999999888888889999988764 


Q ss_pred             CcCccc-cccccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccc
Q psy3787          83 NKISEV-SSNVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQN  160 (263)
Q Consensus        83 ~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  160 (263)
                      +.++.+ +..+..+++|+++++++|.+..++. .+....+|+.+++++|.+++++...+... ..++.+++..+.+    
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~-~~L~~L~l~~N~l----  165 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL-GNLTHLFLHGNRI----  165 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCC----
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccc-cchhhcccccCcc----
Confidence            577777 5568899999999999999987644 57888999999999999999987766543 3567777777663    


Q ss_pred             cCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccc
Q psy3787         161 VDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPES  238 (263)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~  238 (263)
                                 ....+..+.++++|++++++  +++.+++..+....   +|+. |++++|+++.+|...+....++..+
T Consensus       166 -----------~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~---~L~~-L~l~~N~i~~~~~~~~~~~~~L~~L  230 (284)
T d1ozna_         166 -----------SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG---RLMT-LYLFANNLSALPTEALAPLRALQYL  230 (284)
T ss_dssp             -----------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT---TCCE-EECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             -----------cccchhhhccccccchhhhhhccccccChhHhhhhh---hccc-ccccccccccccccccccccccCEE
Confidence                       22234457889999999999  77777555444433   6999 9999999999998877778889999


Q ss_pred             cccCCceEEec
Q psy3787         239 VYMNRPFALTY  249 (263)
Q Consensus       239 ~~~~~~~~~~~  249 (263)
                      .+.+||+.+..
T Consensus       231 ~l~~N~l~C~C  241 (284)
T d1ozna_         231 RLNDNPWVCDC  241 (284)
T ss_dssp             ECCSSCEECSG
T ss_pred             EecCCCCCCCc
Confidence            99999987654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=1.4e-18  Score=143.19  Aligned_cols=216  Identities=19%  Similarity=0.295  Sum_probs=143.7

Q ss_pred             CCCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEE
Q psy3787           3 SHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLL   78 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L   78 (263)
                      +++++|++++|+++.  +++  |.++++|++|++++|.+..++  .|..++.|++|++++|+++.++...   ...+..+
T Consensus        31 ~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~---~~~l~~L  105 (305)
T d1xkua_          31 PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM---PKTLQEL  105 (305)
T ss_dssp             TTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC---CTTCCEE
T ss_pred             CCCCEEECcCCcCCC--cChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch---hhhhhhh
Confidence            568999999999988  554  899999999999999999775  4888999999999999888776532   3456666


Q ss_pred             EeecCcCcccccc---------------------------ccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCC
Q psy3787          79 NLKNNKISEVSSN---------------------------VGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPI  131 (263)
Q Consensus        79 ~l~~~~l~~lp~~---------------------------~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l  131 (263)
                      ...+|.+..++..                           +..+++|+.+++++|.+..+|..+  .++++.+++++|..
T Consensus       106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~  183 (305)
T d1xkua_         106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKI  183 (305)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCC
T ss_pred             hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcC
Confidence            6666666544322                           233344555555555554444321  34455555555554


Q ss_pred             CCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccc
Q psy3787         132 KTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQE  209 (263)
Q Consensus       132 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~  209 (263)
                      ...+...+... ..++.++.+.+.+               ....+..+.++++|++|+++  +++.+|.++..+.    +
T Consensus       184 ~~~~~~~~~~~-~~l~~L~~s~n~l---------------~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~----~  243 (305)
T d1xkua_         184 TKVDAASLKGL-NNLAKLGLSFNSI---------------SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK----Y  243 (305)
T ss_dssp             CEECTGGGTTC-TTCCEEECCSSCC---------------CEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCS----S
T ss_pred             CCCChhHhhcc-ccccccccccccc---------------cccccccccccccceeeeccccccccccccccccc----C
Confidence            44333222211 1223333333331               22334557889999999999  8899998766554    5


Q ss_pred             eeEEEeccCCcccccCccccc------cccccccccccCCceE
Q psy3787         210 CTIEINIDKYKLDRTKTLTLC------KVINIPESVYMNRPFA  246 (263)
Q Consensus       210 L~~~L~ls~n~l~~ip~~~~~------~~~~l~~~~~~~~~~~  246 (263)
                      |+. |++++|+|+.|+...++      ....+..+.+.|||..
T Consensus       244 L~~-L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         244 IQV-VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCE-EECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCE-EECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            999 99999999998875543      3455667788899854

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=7.3e-18  Score=142.62  Aligned_cols=131  Identities=31%  Similarity=0.445  Sum_probs=73.3

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCch---------------
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMEN---------------   66 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~---------------   66 (263)
                      +++|++|++++|+++.  +++++++++|++|++++|.+..++.+..+++|+.++++++.+.....               
T Consensus        65 L~nL~~L~Ls~N~l~~--l~~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (384)
T d2omza2          65 LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN  142 (384)
T ss_dssp             CTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEE
T ss_pred             CCCCCEEeCcCCcCCC--CccccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4556666666666655  45566666666666666666655555555566665555544321100               


Q ss_pred             ------------------------------------------------hhhhCCCCccEEEeecCcCccccccccCCCCc
Q psy3787          67 ------------------------------------------------DYFLTLTKLSLLNLKNNKISEVSSNVGDLINL   98 (263)
Q Consensus        67 ------------------------------------------------~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L   98 (263)
                                                                      ..+..++++..+++++|.++.++. +....+|
T Consensus       143 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L  221 (384)
T d2omza2         143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNL  221 (384)
T ss_dssp             EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTC
T ss_pred             cccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc-ccccCCC
Confidence                                                            112223344444444444443332 2334567


Q ss_pred             CEEEccCCcCCCccccccCCCcccEEEecCCCCCCcch
Q psy3787          99 AILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRN  136 (263)
Q Consensus        99 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~  136 (263)
                      +.+++++|.++.++ .+..+++|+.+++++|.++++++
T Consensus       222 ~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~  258 (384)
T d2omza2         222 DELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP  258 (384)
T ss_dssp             CEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc
Confidence            77777777777665 46667777777777777776553

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.74  E-value=8.6e-19  Score=145.07  Aligned_cols=201  Identities=17%  Similarity=0.199  Sum_probs=151.6

Q ss_pred             CCCCCCEEEeec-CccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCcc
Q psy3787           1 MLSHLKTLDLSH-NKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLS   76 (263)
Q Consensus         1 ~l~~L~~L~l~~-n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~   76 (263)
                      ++++|++|++++ |.+.+ .+|+ +.++++|++|++++|.+..++  .+..+..|+.+++++|.+....+..+..+++++
T Consensus        74 ~L~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~  152 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             GCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             cCcccccccccccccccc-ccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccc
Confidence            478999999997 78875 3666 999999999999999998654  377788999999999988877777789999999


Q ss_pred             EEEeecCcCc-cccccccCCCCc-CEEEccCCcCCC------------------------ccccccCCCcccEEEecCCC
Q psy3787          77 LLNLKNNKIS-EVSSNVGDLINL-AILDLSDNELTD------------------------VPCELSSLFHLKSLFLGGNP  130 (263)
Q Consensus        77 ~L~l~~~~l~-~lp~~~~~l~~L-~~L~l~~n~l~~------------------------l~~~~~~l~~L~~L~l~~n~  130 (263)
                      ++++++|.+. .+|..+..+..+ +.+++++|.++.                        +|..++.+++++.+++.+|.
T Consensus       153 ~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~  232 (313)
T d1ogqa_         153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999888 778877666655 677777766542                        23334556667777777776


Q ss_pred             CCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--ccc-ccChhHHhhcCCc
Q psy3787         131 IKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVI-NIPESVYMRGMSS  207 (263)
Q Consensus       131 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~-~l~~~~~~~~~~~  207 (263)
                      +...++....  ...++.++++.+.+               .+.+|..+..+++|++|+++  +++ .+|. ...    +
T Consensus       233 l~~~~~~~~~--~~~L~~L~Ls~N~l---------------~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~----L  290 (313)
T d1ogqa_         233 LAFDLGKVGL--SKNLNGLDLRNNRI---------------YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN----L  290 (313)
T ss_dssp             ECCBGGGCCC--CTTCCEEECCSSCC---------------EECCCGGGGGCTTCCEEECCSSEEEEECCC-STT----G
T ss_pred             cccccccccc--ccccccccCccCee---------------cccCChHHhCCCCCCEEECcCCcccccCCC-ccc----C
Confidence            6664443222  23556666666664               45788899999999999999  775 7884 222    4


Q ss_pred             cceeEEEeccCCc-ccccC
Q psy3787         208 QECTIEINIDKYK-LDRTK  225 (263)
Q Consensus       208 ~~L~~~L~ls~n~-l~~ip  225 (263)
                      ++|+. +++++|+ ++..|
T Consensus       291 ~~L~~-l~l~~N~~l~g~p  308 (313)
T d1ogqa_         291 QRFDV-SAYANNKCLCGSP  308 (313)
T ss_dssp             GGSCG-GGTCSSSEEESTT
T ss_pred             CCCCH-HHhCCCccccCCC
Confidence            46999 9999997 55544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=2.8e-17  Score=135.32  Aligned_cols=229  Identities=21%  Similarity=0.220  Sum_probs=155.4

Q ss_pred             CCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           5 LKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         5 L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      .+.++.++++++.  +|+ +.  +.+++|++++|+++.++  +|.++++|++|++++|.+..+++.+|..+++|++++++
T Consensus        12 ~~~~~C~~~~L~~--lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCCc--cCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4678888888887  666 42  68999999999999987  48899999999999999999988889999999999999


Q ss_pred             cCcCccccccccCCCCcCEEEccCCcCCCcccc-ccCCCcccEEEecCCCCCCcchHHHHhH-HHHhhhhhCCCCcccc-
Q psy3787          82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCE-LSSLFHLKSLFLGGNPIKTVRNDILQDS-KRIISHIKTSRLDYHC-  158 (263)
Q Consensus        82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~l~~l~~~~~~~~~-  158 (263)
                      +|+++.+|..+  ...++.+...+|.+..++.. +........+....|............. ...+..++...+.+.. 
T Consensus        88 ~n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          88 KNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             SSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CCccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence            99999998764  34678888888877765432 4444455555555543332211111110 1222333332222100 


Q ss_pred             -----cccCCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccc
Q psy3787         159 -----QNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCK  231 (263)
Q Consensus       159 -----~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~  231 (263)
                           ..+..-...........+..+..++.+++|+++  .++.++...+....   +|+. |++++|+|+.+|. .+..
T Consensus       166 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~---~L~~-L~L~~N~L~~lp~-~l~~  240 (305)
T d1xkua_         166 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP---HLRE-LHLNNNKLVKVPG-GLAD  240 (305)
T ss_dssp             CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST---TCCE-EECCSSCCSSCCT-TTTT
T ss_pred             CcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccc---ccee-eeccccccccccc-cccc
Confidence                 000000000011133455668888999999999  78888766555433   7999 9999999999986 4555


Q ss_pred             ccccccccccCCc
Q psy3787         232 VINIPESVYMNRP  244 (263)
Q Consensus       232 ~~~l~~~~~~~~~  244 (263)
                      +.++..+.+.+|+
T Consensus       241 l~~L~~L~Ls~N~  253 (305)
T d1xkua_         241 HKYIQVVYLHNNN  253 (305)
T ss_dssp             CSSCCEEECCSSC
T ss_pred             ccCCCEEECCCCc
Confidence            6778888887775

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=2.1e-17  Score=128.93  Aligned_cols=107  Identities=29%  Similarity=0.445  Sum_probs=85.2

Q ss_pred             CCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEc
Q psy3787          24 IDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDL  103 (263)
Q Consensus        24 ~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l  103 (263)
                      ..+..|+.|++++|.++.++.+..+++|++|++++|.++++++  ++.+++|++|++++|+++.+|. +..+++|+.+++
T Consensus        43 ~~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~l  119 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL  119 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred             HHhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cccCcccccccccccccccccc-cccccccccccc
Confidence            3467788888888888887777788888888888888887764  5678888888888888888774 677888888888


Q ss_pred             cCCcCCCccccccCCCcccEEEecCCCCCCc
Q psy3787         104 SDNELTDVPCELSSLFHLKSLFLGGNPIKTV  134 (263)
Q Consensus       104 ~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~  134 (263)
                      ++|.+..++ .+..++.++.+++++|.++..
T Consensus       120 ~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~  149 (210)
T d1h6ta2         120 EHNGISDIN-GLVHLPQLESLYLGNNKITDI  149 (210)
T ss_dssp             TTSCCCCCG-GGGGCTTCCEEECCSSCCCCC
T ss_pred             ccccccccc-ccccccccccccccccccccc
Confidence            888877665 577788888888888876654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=8.9e-17  Score=124.27  Aligned_cols=155  Identities=22%  Similarity=0.298  Sum_probs=118.8

Q ss_pred             ccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcC
Q psy3787          20 LPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLA   99 (263)
Q Consensus        20 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~   99 (263)
                      ......+++++.|++++|.++.++.+..+++|++|++++|.++++++  ++++++|++|++++|.+..++. +..++.|+
T Consensus        33 ~~~~~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~  109 (199)
T d2omxa2          33 TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLT  109 (199)
T ss_dssp             EECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCS
T ss_pred             ccCHHHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc-cccccccc
Confidence            33345678888999999998888888888899999999998888765  7788899999999988887764 67888899


Q ss_pred             EEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccc
Q psy3787         100 ILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK  179 (263)
Q Consensus       100 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (263)
                      .++++++.+..++ .+..+++|+.+++++|.+..++.                                          +
T Consensus       110 ~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~------------------------------------------l  146 (199)
T d2omxa2         110 GLTLFNNQITDID-PLKNLTNLNRLELSSNTISDISA------------------------------------------L  146 (199)
T ss_dssp             EEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG------------------------------------------G
T ss_pred             ccccccccccccc-ccchhhhhHHhhhhhhhhccccc------------------------------------------c
Confidence            9999888777654 47778888999888887665431                                          3


Q ss_pred             cccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787         180 YKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT  226 (263)
Q Consensus       180 ~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~  226 (263)
                      ..+++|++|++.  .++.++. +..    +++|+. |++++|+++.+|.
T Consensus       147 ~~~~~L~~L~l~~n~l~~l~~-l~~----l~~L~~-L~ls~N~i~~i~~  189 (199)
T d2omxa2         147 SGLTSLQQLNFSSNQVTDLKP-LAN----LTTLER-LDISSNKVSDISV  189 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG-GTT----CTTCCE-EECCSSCCCCCGG
T ss_pred             cccccccccccccccccCCcc-ccC----CCCCCE-EECCCCCCCCCcc
Confidence            345677777777  6666653 222    446998 9999998888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.2e-16  Score=123.61  Aligned_cols=128  Identities=30%  Similarity=0.442  Sum_probs=113.6

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +.+++.|+++++.+..  ++.++.+++|++|++++|+++.++.+..+++|++|++++|.+..+++  +..+++|+.++++
T Consensus        39 l~~l~~L~l~~~~i~~--l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~  114 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF  114 (199)
T ss_dssp             HTTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             hcCCCEEECCCCCCCC--ccccccCCCcCcCccccccccCcccccCCcccccccccccccccccc--ccccccccccccc
Confidence            4678999999999987  66788999999999999999998889999999999999999888764  7899999999999


Q ss_pred             cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcc
Q psy3787          82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVR  135 (263)
Q Consensus        82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~  135 (263)
                      ++....++. +..+++|+.+++++|.+..++ .+..+++++.+++.+|.++.++
T Consensus       115 ~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~  166 (199)
T d2omxa2         115 NNQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLK  166 (199)
T ss_dssp             SSCCCCCGG-GTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG
T ss_pred             ccccccccc-cchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCc
Confidence            998887653 678899999999999998776 5889999999999999888764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=9e-17  Score=127.77  Aligned_cols=211  Identities=16%  Similarity=0.232  Sum_probs=149.5

Q ss_pred             CEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCC-CchhhhhCCCCccEEEee
Q psy3787           6 KTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINN-MENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         6 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~   81 (263)
                      +.++.++.+++.  +|+ +  .+++++|++++|.++.+|  .|.++++|++|++++|.+.+ +++.+|..++.+.++.+.
T Consensus        11 ~~i~c~~~~l~~--iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVTE--IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCSS--CCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCCC--cCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            577888888776  665 3  257899999999999877  37889999999999998875 566678889999999887


Q ss_pred             c-CcCcccc-ccccCCCCcCEEEccCCcCCCccc--cccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccc
Q psy3787          82 N-NKISEVS-SNVGDLINLAILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYH  157 (263)
Q Consensus        82 ~-~~l~~lp-~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~  157 (263)
                      + +.+..++ ..+..+++|++++++++.+...+.  .+..+..+..+....+.+..++...+......+..++...+.  
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~--  164 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG--  164 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC--
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccc--
Confidence            6 5676554 557889999999999998886643  244556666666677778777765544322233344443433  


Q ss_pred             ccccCCCCCCCcCCcccccccccccCCcceec-cc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccc
Q psy3787         158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLT-LC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVIN  234 (263)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~-l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~  234 (263)
                                    ...++.......+++.+. ++  +++.+|.+.|...   ++|+. |++++|+|+.+|...+..+.+
T Consensus       165 --------------l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l---~~L~~-L~Ls~N~l~~l~~~~~~~l~~  226 (242)
T d1xwdc1         165 --------------IQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA---SGPVI-LDISRTRIHSLPSYGLENLKK  226 (242)
T ss_dssp             --------------CCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTS---CCCSE-EECTTSCCCCCCSSSCTTCCE
T ss_pred             --------------ccccccccccchhhhccccccccccccccHHHhcCC---CCCCE-EECCCCcCCccCHHHHcCCcc
Confidence                          334444445556665554 45  7899998766543   37999 999999999999877755555


Q ss_pred             cccccc
Q psy3787         235 IPESVY  240 (263)
Q Consensus       235 l~~~~~  240 (263)
                      +..+..
T Consensus       227 L~~l~~  232 (242)
T d1xwdc1         227 LRARST  232 (242)
T ss_dssp             EESSSE
T ss_pred             cccCcC
Confidence            544443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.7e-16  Score=123.94  Aligned_cols=196  Identities=20%  Similarity=0.243  Sum_probs=139.2

Q ss_pred             eecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcccc
Q psy3787          10 LSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVS   89 (263)
Q Consensus        10 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp   89 (263)
                      +..+++++  ....+.+.+|+.|++.+|.++.++.+..+++|+.|++++|.+.++.+  +..+++++.+++++|.++.++
T Consensus        26 l~~~~~~d--~~~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~  101 (227)
T d1h6ua2          26 AGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS  101 (227)
T ss_dssp             TTCSSTTS--EECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG
T ss_pred             hCCCCcCC--cCCHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc
Confidence            33444444  34466778889999999988888878888899999999998887765  778888999999888888776


Q ss_pred             ccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCc
Q psy3787          90 SNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQ  169 (263)
Q Consensus        90 ~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  169 (263)
                      . +..++.|+.+.++++....++ .+...+.+..+.++.+.+...... ..  ...++.+....+.+             
T Consensus       102 ~-l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~-~~--~~~L~~L~l~~n~~-------------  163 (227)
T d1h6ua2         102 A-IAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISPL-AG--LTNLQYLSIGNAQV-------------  163 (227)
T ss_dssp             G-GTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGG-GG--CTTCCEEECCSSCC-------------
T ss_pred             c-ccccccccccccccccccccc-hhccccchhhhhchhhhhchhhhh-cc--cccccccccccccc-------------
Confidence            4 567888899998888776654 356677888888888877665431 11  23455555544441             


Q ss_pred             CCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCcccccccccccccc
Q psy3787         170 ESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESV  239 (263)
Q Consensus       170 ~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~  239 (263)
                         .. ...+..+++|++|+++  .++.++. +..    +++|+. |++++|+++.+|+..  .+.++..+.
T Consensus       164 ---~~-~~~l~~l~~L~~L~Ls~n~l~~l~~-l~~----l~~L~~-L~Ls~N~lt~i~~l~--~l~~L~~L~  223 (227)
T d1h6ua2         164 ---SD-LTPLANLSKLTTLKADDNKISDISP-LAS----LPNLIE-VHLKNNQISDVSPLA--NTSNLFIVT  223 (227)
T ss_dssp             ---CC-CGGGTTCTTCCEEECCSSCCCCCGG-GGG----CTTCCE-EECTTSCCCBCGGGT--TCTTCCEEE
T ss_pred             ---cc-chhhcccccceecccCCCccCCChh-hcC----CCCCCE-EECcCCcCCCCcccc--cCCCCCEEE
Confidence               11 1237788999999999  7777764 333    346999 999999999988633  234444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.1e-16  Score=123.13  Aligned_cols=164  Identities=26%  Similarity=0.333  Sum_probs=136.8

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +.+++.|++++|.+..  ++.+..+++|++|++++|.++.++.+..+++|++|++++|++++++.  +..+++|+.+++.
T Consensus        45 L~~L~~L~l~~~~i~~--l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~  120 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLE  120 (210)
T ss_dssp             HHTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECT
T ss_pred             hcCccEEECcCCCCCC--chhHhhCCCCCEEeCCCccccCccccccCcccccccccccccccccc--ccccccccccccc
Confidence            3578999999999987  66788999999999999999999888899999999999999998753  7889999999999


Q ss_pred             cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccccc
Q psy3787          82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV  161 (263)
Q Consensus        82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  161 (263)
                      +|.+..++. +..++.++.++++.|.++..+ .+..+++|+.+++++|.++++++ ...  ...++.++++.+.      
T Consensus       121 ~~~~~~~~~-l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~-l~~--l~~L~~L~Ls~N~------  189 (210)
T d1h6ta2         121 HNGISDING-LVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAG--LTKLQNLYLSKNH------  189 (210)
T ss_dssp             TSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTT--CTTCCEEECCSSC------
T ss_pred             ccccccccc-ccccccccccccccccccccc-ccccccccccccccccccccccc-ccC--CCCCCEEECCCCC------
Confidence            999887654 677889999999999988765 57788999999999999998764 111  3467777777666      


Q ss_pred             CCCCCCCcCCcccccccccccCCcceeccc
Q psy3787         162 DGGGMSSQESTSEINIDKYKLDRTKTLTLC  191 (263)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  191 (263)
                                ...++ .+..+++|++|+++
T Consensus       190 ----------i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         190 ----------ISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             ----------CCBCG-GGTTCTTCSEEEEE
T ss_pred             ----------CCCCh-hhcCCCCCCEEEcc
Confidence                      34443 58888999999885

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4e-16  Score=131.77  Aligned_cols=192  Identities=20%  Similarity=0.280  Sum_probs=131.4

Q ss_pred             ccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcC
Q psy3787          20 LPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLA   99 (263)
Q Consensus        20 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~   99 (263)
                      ...+..+++++.+++++|.++.++.+..+++|+.+++++|.++.++  .+..+++++.+++++|.++.++. +..+++|+
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~  266 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP-LSGLTKLT  266 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCS
T ss_pred             ccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc--hhhcccccchhccccCccCCCCc-ccccccCC
Confidence            3346677788888888888777766666777888888888777754  26677788888888888776654 56677788


Q ss_pred             EEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCcccccccc
Q psy3787         100 ILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDK  179 (263)
Q Consensus       100 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (263)
                      .++++++.++.++ .+..++.++.+.+..|.++.++.. ..  ...+..++++.+.                ...++ .+
T Consensus       267 ~L~l~~~~l~~~~-~~~~~~~l~~l~~~~n~l~~~~~~-~~--~~~l~~L~ls~n~----------------l~~l~-~l  325 (384)
T d2omza2         267 ELKLGANQISNIS-PLAGLTALTNLELNENQLEDISPI-SN--LKNLTYLTLYFNN----------------ISDIS-PV  325 (384)
T ss_dssp             EEECCSSCCCCCG-GGTTCTTCSEEECCSSCCSCCGGG-GG--CTTCSEEECCSSC----------------CSCCG-GG
T ss_pred             EeeccCcccCCCC-cccccccccccccccccccccccc-ch--hcccCeEECCCCC----------------CCCCc-cc
Confidence            8888888777765 366777788888888877775421 11  2344555555544                22232 36


Q ss_pred             cccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCccccccccccccccccCC
Q psy3787         180 YKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKTLTLCKVINIPESVYMNR  243 (263)
Q Consensus       180 ~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~~~~~~~~~l~~~~~~~~  243 (263)
                      ..+++|++|+++  +++.++ .+..    +++|+. |++++|+++.+++.  .++.++..+.+.+|
T Consensus       326 ~~l~~L~~L~L~~n~l~~l~-~l~~----l~~L~~-L~l~~N~l~~l~~l--~~l~~L~~L~L~~N  383 (384)
T d2omza2         326 SSLTKLQRLFFANNKVSDVS-SLAN----LTNINW-LSAGHNQISDLTPL--ANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCG-GGGG----CTTCCE-EECCSSCCCBCGGG--TTCTTCSEEECCCE
T ss_pred             ccCCCCCEEECCCCCCCCCh-hHcC----CCCCCE-EECCCCcCCCChhh--ccCCCCCEeeCCCC
Confidence            778899999999  777776 3443    346998 99999999987753  33455655555444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9.7e-17  Score=119.92  Aligned_cols=112  Identities=22%  Similarity=0.307  Sum_probs=61.8

Q ss_pred             ccCCCCCCcEEEecCCCCCCCcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcccccc-ccCCCCcC
Q psy3787          22 LFIDMRSLTELNLSYNQLTMLPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSN-VGDLINLA   99 (263)
Q Consensus        22 ~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~   99 (263)
                      .+.+..++++|++++|.|+.++. +..+++|++|++++|.+..++.  +..+++|++|++++|+++.++.. +..+++|+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCccccccccccc
Confidence            34455555666666666655554 2445556666666665555432  45555666666666666655443 23455566


Q ss_pred             EEEccCCcCCCccc--cccCCCcccEEEecCCCCCCcc
Q psy3787         100 ILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPIKTVR  135 (263)
Q Consensus       100 ~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~~  135 (263)
                      +|++++|.++.++.  .+..+++|+.+++++|+++..+
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             cceeccccccccccccccccccccchhhcCCCcccccc
Confidence            66666665555432  3555566666666666555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=2.2e-15  Score=115.61  Aligned_cols=127  Identities=29%  Similarity=0.301  Sum_probs=111.3

Q ss_pred             CCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCC-Cc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           5 LKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTM-LP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         5 L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~-l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      .++++.++++++.  +|+ +.  +++++|++++|.|+. ++  .|..+++|++|++++|.+..+++..+..+++|++|++
T Consensus        10 ~~~v~Cs~~~L~~--iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLKE--IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCSS--CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcCc--cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            4578999999987  775 42  689999999999974 43  4788999999999999999999999999999999999


Q ss_pred             ecCcCccccc-cccCCCCcCEEEccCCcCCCccc-cccCCCcccEEEecCCCCCCcc
Q psy3787          81 KNNKISEVSS-NVGDLINLAILDLSDNELTDVPC-ELSSLFHLKSLFLGGNPIKTVR  135 (263)
Q Consensus        81 ~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~  135 (263)
                      ++|+++.+|. .+..+++|++|++++|.|+.++. .|..+++|+++++++|++....
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence            9999998865 57899999999999999999865 5889999999999999987643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=4.4e-15  Score=116.85  Aligned_cols=185  Identities=21%  Similarity=0.300  Sum_probs=146.8

Q ss_pred             CCCCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEee
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLK   81 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~   81 (263)
                      +.+|+.|++.+|+++.  ++.+.++++|++|++++|.+..++.+..+++++++++++|.++.+..  +..+++|+.+.++
T Consensus        40 l~~L~~L~l~~~~i~~--l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~--l~~l~~L~~l~l~  115 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLT  115 (227)
T ss_dssp             HHTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECT
T ss_pred             cCCcCEEECCCCCCCc--chhHhcCCCCcEeecCCceeecccccccccccccccccccccccccc--ccccccccccccc
Confidence            4578999999999987  66799999999999999999988888999999999999999887753  7789999999999


Q ss_pred             cCcCccccccccCCCCcCEEEccCCcCCCccccccCCCcccEEEecCCCCCCcchHHHHhHHHHhhhhhCCCCccccccc
Q psy3787          82 NNKISEVSSNVGDLINLAILDLSDNELTDVPCELSSLFHLKSLFLGGNPIKTVRNDILQDSKRIISHIKTSRLDYHCQNV  161 (263)
Q Consensus        82 ~~~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  161 (263)
                      ++....++. +.....++.+.++.+.+.... .+..+++|+.+++++|.+...+. +..  ...++.++++.+.      
T Consensus       116 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~-l~~--l~~L~~L~Ls~n~------  184 (227)
T d1h6ua2         116 STQITDVTP-LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTP-LAN--LSKLTTLKADDNK------  184 (227)
T ss_dssp             TSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG-GTT--CTTCCEEECCSSC------
T ss_pred             cccccccch-hccccchhhhhchhhhhchhh-hhccccccccccccccccccchh-hcc--cccceecccCCCc------
Confidence            998776544 456678889999888887554 46778899999999998887653 111  3457777776665      


Q ss_pred             CCCCCCCcCCcccccccccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccC
Q psy3787         162 DGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDK  218 (263)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~  218 (263)
                                ...++ .+..+++|++|+++  +++.+++ +..    +++|+. |++++
T Consensus       185 ----------l~~l~-~l~~l~~L~~L~Ls~N~lt~i~~-l~~----l~~L~~-L~lsn  226 (227)
T d1h6ua2         185 ----------ISDIS-PLASLPNLIEVHLKNNQISDVSP-LAN----TSNLFI-VTLTN  226 (227)
T ss_dssp             ----------CCCCG-GGGGCTTCCEEECTTSCCCBCGG-GTT----CTTCCE-EEEEE
T ss_pred             ----------cCCCh-hhcCCCCCCEEECcCCcCCCCcc-ccc----CCCCCE-EEeeC
Confidence                      23333 47889999999999  8888864 332    446998 99874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.4e-15  Score=120.65  Aligned_cols=199  Identities=15%  Similarity=0.179  Sum_probs=145.6

Q ss_pred             CCCCEEEeecCccCCCCccc--cCCCCCCcEEEecCCCCCC-Cc--CCCCCCCCcEEEecC-CCCCCCchhhhhCCCCcc
Q psy3787           3 SHLKTLDLSHNKLVSDSLPL--FIDMRSLTELNLSYNQLTM-LP--VCTDCKNLTHLLLGF-NKINNMENDYFLTLTKLS   76 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-l~--~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~   76 (263)
                      +++++|++++|+++.  ++.  |.++++|++|++++|.+.. ++  .|..++.++++.+.+ +.+...++..|..+++|+
T Consensus        29 ~~l~~L~Ls~n~i~~--l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          29 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  106 (242)
T ss_dssp             SCCSEEEEESCCCCE--ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred             CCCCEEECcCCcCCc--cChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccc
Confidence            478999999999987  554  8999999999999999874 33  477889999998765 678888888899999999


Q ss_pred             EEEeecCcCcccccc--ccCCCCcCEEEccCCcCCCccc-cccCCC-cccEEEecCCCCCCcchHHHHhHHHHhhhhhCC
Q psy3787          77 LLNLKNNKISEVSSN--VGDLINLAILDLSDNELTDVPC-ELSSLF-HLKSLFLGGNPIKTVRNDILQDSKRIISHIKTS  152 (263)
Q Consensus        77 ~L~l~~~~l~~lp~~--~~~l~~L~~L~l~~n~l~~l~~-~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~l~~l~~~  152 (263)
                      ++++++|+++..+..  ...+..+..+...++.+..++. .+..++ .+..+++.+|.++.++...+... .....+...
T Consensus       107 ~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~-~l~~~~~l~  185 (242)
T d1xwdc1         107 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT-QLDELNLSD  185 (242)
T ss_dssp             EEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTC-CEEEEECTT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccch-hhhcccccc
Confidence            999999999866542  3455666666667777877753 355554 78899999999999887765543 111112222


Q ss_pred             CCcccccccCCCCCCCcCCccccccc-ccccCCcceeccc--cccccChhHHhhcCCccceeEEEeccCCcccccCc
Q psy3787         153 RLDYHCQNVDGGGMSSQESTSEINID-KYKLDRTKTLTLC--KVINIPESVYMRGMSSQECTIEINIDKYKLDRTKT  226 (263)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~L~~~L~ls~n~l~~ip~  226 (263)
                      .+.                ...++.. +.++++|++|+++  +++.+|.+.+..   +++|+. +++.+  +..+|+
T Consensus       186 ~n~----------------l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~---l~~L~~-l~~~~--l~~lp~  240 (242)
T d1xwdc1         186 NNN----------------LEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---LKKLRA-RSTYN--LKKLPT  240 (242)
T ss_dssp             CTT----------------CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTT---CCEEES-SSEES--SSCSCC
T ss_pred             ccc----------------cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcC---Cccccc-CcCCC--CCcCCC
Confidence            222                3445443 6889999999999  899998765443   346776 66643  556665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=3.5e-15  Score=106.22  Aligned_cols=102  Identities=28%  Similarity=0.314  Sum_probs=62.7

Q ss_pred             EEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCCcCCC
Q psy3787          31 ELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDNELTD  110 (263)
Q Consensus        31 ~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~~  110 (263)
                      .|++++|+++.++.+..+++|++|++++|.++.+++. +..+++|+.|++++|.++.+|. +..+++|+++++++|.++.
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCCS
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccccccccCc-cccccccCeEECCCCccCC
Confidence            4566666666555555666666666666666655432 5566666666666666666653 5566666666666666665


Q ss_pred             ccc--cccCCCcccEEEecCCCCCCc
Q psy3787         111 VPC--ELSSLFHLKSLFLGGNPIKTV  134 (263)
Q Consensus       111 l~~--~~~~l~~L~~L~l~~n~l~~~  134 (263)
                      ++.  .++.+++|+.+++++|+++..
T Consensus        80 ~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCchhhcCCCCCCEEECCCCcCCcC
Confidence            542  356666677777776666543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=3.6e-15  Score=106.20  Aligned_cols=115  Identities=26%  Similarity=0.331  Sum_probs=98.4

Q ss_pred             CEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCc
Q psy3787           6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNK   84 (263)
Q Consensus         6 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~   84 (263)
                      |.|++++|+++.  ++.+.++++|++|++++|.++.+| .+..+++|+.|++++|.++.+++  +..+++|+++++++|+
T Consensus         1 R~L~Ls~n~l~~--l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSS--CCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCC--CcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc--cccccccCeEECCCCc
Confidence            579999999987  777999999999999999999997 48899999999999999998854  8899999999999999


Q ss_pred             Cccccc--cccCCCCcCEEEccCCcCCCcc---cc-ccCCCcccEE
Q psy3787          85 ISEVSS--NVGDLINLAILDLSDNELTDVP---CE-LSSLFHLKSL  124 (263)
Q Consensus        85 l~~lp~--~~~~l~~L~~L~l~~n~l~~l~---~~-~~~l~~L~~L  124 (263)
                      ++.++.  .+..+++|+++++++|.+...+   .. ...+++++.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            997764  5788999999999999987543   22 3446666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=2.7e-15  Score=115.08  Aligned_cols=108  Identities=35%  Similarity=0.414  Sum_probs=96.0

Q ss_pred             CCCCEEEeecCccCCCCc-cccCCCCCCcEEEecCCCCCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           3 SHLKTLDLSHNKLVSDSL-PLFIDMRSLTELNLSYNQLTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         3 ~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      +++++|++++|+++.... ..|.++++|+.|++++|.+..++  .+..++.|++|++++|++..+++.+|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            468999999999976222 23899999999999999999776  488899999999999999999999999999999999


Q ss_pred             eecCcCccccc-cccCCCCcCEEEccCCcCCC
Q psy3787          80 LKNNKISEVSS-NVGDLINLAILDLSDNELTD  110 (263)
Q Consensus        80 l~~~~l~~lp~-~~~~l~~L~~L~l~~n~l~~  110 (263)
                      +++|+++.+|. .+..+.+|+++++++|.+..
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cCCccccccCHHHhcCCccccccccccccccc
Confidence            99999998865 57899999999999998874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.7e-15  Score=111.95  Aligned_cols=122  Identities=20%  Similarity=0.222  Sum_probs=108.2

Q ss_pred             CCCCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEe
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNL   80 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l   80 (263)
                      +..+++|++++|+++.  ++. +..+++|+.|++++|.++.++.+..+++|++|++++|.++.+++..+..+++|++|++
T Consensus        17 ~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          17 AVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            4578999999999998  666 6789999999999999999888999999999999999999988877788999999999


Q ss_pred             ecCcCccccc--cccCCCCcCEEEccCCcCCCccc----cccCCCcccEEE
Q psy3787          81 KNNKISEVSS--NVGDLINLAILDLSDNELTDVPC----ELSSLFHLKSLF  125 (263)
Q Consensus        81 ~~~~l~~lp~--~~~~l~~L~~L~l~~n~l~~l~~----~~~~l~~L~~L~  125 (263)
                      ++|+++.++.  .+..+++|+++++++|.++..|.    .+..+++|+.|+
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            9999998764  57889999999999999987763    377889999886

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.47  E-value=5.8e-13  Score=110.44  Aligned_cols=95  Identities=28%  Similarity=0.406  Sum_probs=60.0

Q ss_pred             CCCEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC
Q psy3787           4 HLKTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN   83 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~   83 (263)
                      ++++|++++++++.  +|++  .++|++|++++|+++.+|..  ..+|+.|++++|.++.+..  +  .+.|++|++++|
T Consensus        39 ~l~~LdLs~~~L~~--lp~~--~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L~~n  108 (353)
T d1jl5a_          39 QAHELELNNLGLSS--LPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNN  108 (353)
T ss_dssp             TCSEEECTTSCCSC--CCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSS
T ss_pred             CCCEEEeCCCCCCC--CCCC--CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhh--h--cccccccccccc
Confidence            46778888887776  6642  46778888888887777643  3466666777666655432  1  134666666666


Q ss_pred             cCccccccccCCCCcCEEEccCCcCC
Q psy3787          84 KISEVSSNVGDLINLAILDLSDNELT  109 (263)
Q Consensus        84 ~l~~lp~~~~~l~~L~~L~l~~n~l~  109 (263)
                      .+..+|. ++.+++|++++++++.+.
T Consensus       109 ~l~~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         109 QLEKLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CCSSCCC-CTTCTTCCEEECCSSCCS
T ss_pred             ccccccc-hhhhccceeecccccccc
Confidence            6666654 355666666666655443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6.4e-12  Score=92.63  Aligned_cols=109  Identities=20%  Similarity=0.188  Sum_probs=87.9

Q ss_pred             CCCCCCcEEEecCCCCCCCc-CCCCCCCCcEEEecCC-CCCCCchhhhhCCCCccEEEeecCcCcccc-ccccCCCCcCE
Q psy3787          24 IDMRSLTELNLSYNQLTMLP-VCTDCKNLTHLLLGFN-KINNMENDYFLTLTKLSLLNLKNNKISEVS-SNVGDLINLAI  100 (263)
Q Consensus        24 ~~l~~L~~L~l~~n~l~~l~-~~~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~  100 (263)
                      +.+...+.++.+++.+...| .+..+++++.|+++++ .++.+++.+|.++++|+.|++++|+++.++ ..+..+++|++
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            44455667888888877665 4777888889998765 588888888889999999999999999884 45788899999


Q ss_pred             EEccCCcCCCccccccCCCcccEEEecCCCCC
Q psy3787         101 LDLSDNELTDVPCELSSLFHLKSLFLGGNPIK  132 (263)
Q Consensus       101 L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~  132 (263)
                      |++++|.++.+|..+.....|+.|++++|++.
T Consensus        85 L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             eeccCCCCcccChhhhccccccccccCCCccc
Confidence            99999999988776555557999999999875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.30  E-value=1.2e-14  Score=111.90  Aligned_cols=128  Identities=27%  Similarity=0.355  Sum_probs=101.6

Q ss_pred             CCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC
Q psy3787           5 LKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN   83 (263)
Q Consensus         5 L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~   83 (263)
                      ++.+++.+.--....++. +..+++|++|++++|.|+.++.+..+++|+.|++++|.++.+++. ...+++|++|++++|
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN  103 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECSEE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccccccc-ccccccccccccccc
Confidence            445566554211112444 888999999999999999988888899999999999999887643 344568999999999


Q ss_pred             cCccccccccCCCCcCEEEccCCcCCCccc--cccCCCcccEEEecCCCCCCc
Q psy3787          84 KISEVSSNVGDLINLAILDLSDNELTDVPC--ELSSLFHLKSLFLGGNPIKTV  134 (263)
Q Consensus        84 ~l~~lp~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~  134 (263)
                      +++.++. +..+++|++|++++|.++.++.  .++.+++|+.|++++|++...
T Consensus       104 ~i~~l~~-~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         104 QIASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             ECCCHHH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccc-ccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            9998754 6678889999999999998763  588999999999999987664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9.5e-12  Score=91.69  Aligned_cols=104  Identities=24%  Similarity=0.188  Sum_probs=90.8

Q ss_pred             CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCC-CCCCc--CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEE
Q psy3787           4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQ-LTMLP--VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLN   79 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~   79 (263)
                      ..+.++.+++.+..  .|. +..+++|+.|++++++ ++.++  +|.++++|+.|++++|++..+++.+|..+++|++|+
T Consensus         9 ~~~~l~c~~~~~~~--~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           9 GSSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSCEECCSSCCCT--TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCeEEecCCCCcc--CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            35668888888776  555 8889999999998774 88776  589999999999999999999999999999999999


Q ss_pred             eecCcCccccccccCCCCcCEEEccCCcCC
Q psy3787          80 LKNNKISEVSSNVGDLINLAILDLSDNELT  109 (263)
Q Consensus        80 l~~~~l~~lp~~~~~l~~L~~L~l~~n~l~  109 (263)
                      +++|+++.+|..+.....+++|++++|.+.
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhccccccccccCCCccc
Confidence            999999999887656668999999999875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=4.3e-14  Score=108.76  Aligned_cols=124  Identities=19%  Similarity=0.242  Sum_probs=76.8

Q ss_pred             CcEEEecCC--CCCCCc-CCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccC
Q psy3787          29 LTELNLSYN--QLTMLP-VCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSD  105 (263)
Q Consensus        29 L~~L~l~~n--~l~~l~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~  105 (263)
                      ++.+++.+.  .+..++ .+..+++|++|++++|.++.+++  +..+++|+.|++++|.++.+|.....+..|++|++++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCccc--ccCCccccChhhccccccccccccccccccccccccc
Confidence            444455443  233443 35566777777777777776643  6667777777777777777665444455677777777


Q ss_pred             CcCCCccccccCCCcccEEEecCCCCCCcch-HHHHhHHHHhhhhhCCCCcc
Q psy3787         106 NELTDVPCELSSLFHLKSLFLGGNPIKTVRN-DILQDSKRIISHIKTSRLDY  156 (263)
Q Consensus       106 n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~l~~l~~~~~~~  156 (263)
                      |.++.++ .+..+++|+.|++++|.++.++. ..+.. ...++.+++.++++
T Consensus       103 N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~-l~~L~~L~L~~N~l  152 (198)
T d1m9la_         103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAA-LDKLEDLLLAGNPL  152 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTT-TTTCSEEEECSSHH
T ss_pred             ccccccc-cccccccccccccccchhccccccccccC-CCccceeecCCCcc
Confidence            7777664 36666777777777777776643 11111 34566666666553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.21  E-value=1.7e-10  Score=95.14  Aligned_cols=100  Identities=26%  Similarity=0.314  Sum_probs=77.5

Q ss_pred             CCCcEEEecCCCCCCCcCCCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCccccccccCCCCcCEEEccCC
Q psy3787          27 RSLTELNLSYNQLTMLPVCTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVSSNVGDLINLAILDLSDN  106 (263)
Q Consensus        27 ~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~n  106 (263)
                      .+++.|+++++.++.+|++  .++|++|++++|++++++..    ..+|+.|++++|+++.++..   ...|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc----hhhhhhhhhhhcccchhhhh---cccccccccccc
Confidence            3688889999988888853  56888899999888877542    46788888888888877642   245888999988


Q ss_pred             cCCCccccccCCCcccEEEecCCCCCCcch
Q psy3787         107 ELTDVPCELSSLFHLKSLFLGGNPIKTVRN  136 (263)
Q Consensus       107 ~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~  136 (263)
                      .+..+|. ++.+++|+.++++++.+...+.
T Consensus       109 ~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~  137 (353)
T d1jl5a_         109 QLEKLPE-LQNSSFLKIIDVDNNSLKKLPD  137 (353)
T ss_dssp             CCSSCCC-CTTCTTCCEEECCSSCCSCCCC
T ss_pred             ccccccc-hhhhccceeecccccccccccc
Confidence            8888874 5778888999888887776554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=4.2e-11  Score=96.91  Aligned_cols=180  Identities=16%  Similarity=0.166  Sum_probs=100.3

Q ss_pred             CCCCCcEEEecCCCCCC--CcC-CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecC-cCcc--ccccccCCCCc
Q psy3787          25 DMRSLTELNLSYNQLTM--LPV-CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNN-KISE--VSSNVGDLINL   98 (263)
Q Consensus        25 ~l~~L~~L~l~~n~l~~--l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~-~l~~--lp~~~~~l~~L   98 (263)
                      ...+|++|+++++.++.  +.. +..+++|++|+++++.+.......+..+++|++|++++| .++.  +......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            45577888888777652  222 566778888888888776555556777778888888775 5552  22223456778


Q ss_pred             CEEEccCC-cCCC--cccccc-CCCcccEEEecCCC--CCCcchHHHHhHHHHhhhhhCCCCcccccccCCCCCCCcCCc
Q psy3787          99 AILDLSDN-ELTD--VPCELS-SLFHLKSLFLGGNP--IKTVRNDILQDSKRIISHIKTSRLDYHCQNVDGGGMSSQEST  172 (263)
Q Consensus        99 ~~L~l~~n-~l~~--l~~~~~-~l~~L~~L~l~~n~--l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  172 (263)
                      ++|+++++ .++.  +...+. ..+.|+.++++++.  ++...-..+....+.+++++++++.    .+          .
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~----~i----------t  189 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV----ML----------K  189 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT----TC----------C
T ss_pred             cccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccccc----CC----------C
Confidence            88888775 3442  222222 34577888777642  2221111111112345555554332    11          2


Q ss_pred             ccccccccccCCcceeccccccccChhHHhhcCCccceeEEEeccCC
Q psy3787         173 SEINIDKYKLDRTKTLTLCKVINIPESVYMRGMSSQECTIEINIDKY  219 (263)
Q Consensus       173 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~~L~ls~n  219 (263)
                      ...+..+..+++|++|++++-..+.+.......++++|+. |+++++
T Consensus       190 d~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~-L~l~~~  235 (284)
T d2astb2         190 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT-LQVFGI  235 (284)
T ss_dssp             GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE-EECTTS
T ss_pred             chhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCE-EeeeCC
Confidence            2334456677888888888222222222222222456888 888877

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.9e-11  Score=96.49  Aligned_cols=199  Identities=16%  Similarity=0.167  Sum_probs=121.9

Q ss_pred             CEEEeecCccCCCCccccCCCCCCcEEEecCCCCCCC-cCCCCCCCCcEEEecCCCCCCC-chhhhhCCCCccEEEeecC
Q psy3787           6 KTLDLSHNKLVSDSLPLFIDMRSLTELNLSYNQLTML-PVCTDCKNLTHLLLGFNKINNM-ENDYFLTLTKLSLLNLKNN   83 (263)
Q Consensus         6 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~~   83 (263)
                      +++|++++.+....+..+.. .....+.++...+... .......+|++|+++++.+... ....+..+++|++|++.+|
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~   81 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL   81 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence            37888887764321222211 2345566665554432 2334557899999999987643 3455778899999999999


Q ss_pred             cCc-cccccccCCCCcCEEEccCC-cCCC--ccccccCCCcccEEEecCC-CCCCcchHH-HHhHHHHhhhhhCCCCccc
Q psy3787          84 KIS-EVSSNVGDLINLAILDLSDN-ELTD--VPCELSSLFHLKSLFLGGN-PIKTVRNDI-LQDSKRIISHIKTSRLDYH  157 (263)
Q Consensus        84 ~l~-~lp~~~~~l~~L~~L~l~~n-~l~~--l~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~~~~~l~~l~~~~~~~~  157 (263)
                      .++ ..+..+..+++|++|+++++ .++.  +......+++|+.|+++++ .++...... .......++.+++++..  
T Consensus        82 ~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~--  159 (284)
T d2astb2          82 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR--  159 (284)
T ss_dssp             BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG--
T ss_pred             CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc--
Confidence            887 55666788899999999996 5663  3333567899999999986 343311111 11112345555553321  


Q ss_pred             ccccCCCCCCCcCCcccccccccccCCcceeccc---ccc-ccChhHHhhcCCccceeEEEeccCC-ccc
Q psy3787         158 CQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC---KVI-NIPESVYMRGMSSQECTIEINIDKY-KLD  222 (263)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~---~~~-~l~~~~~~~~~~~~~L~~~L~ls~n-~l~  222 (263)
                       ..+.         ...+..-+..+++|++|+++   .++ .....+..    +++|+. |++++| .++
T Consensus       160 -~~i~---------~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~----~~~L~~-L~L~~C~~i~  214 (284)
T d2astb2         160 -KNLQ---------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ----LNYLQH-LSLSRCYDII  214 (284)
T ss_dssp             -GGSC---------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG----CTTCCE-EECTTCTTCC
T ss_pred             -cccc---------cccccccccccccccccccccccCCCchhhhhhcc----cCcCCE-EECCCCCCCC
Confidence             0010         11122223567999999998   344 22233333    557999 999996 465

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.00  E-value=1.4e-10  Score=96.16  Aligned_cols=210  Identities=13%  Similarity=0.070  Sum_probs=118.0

Q ss_pred             CCCCCEEEeecCccCCCC--cc--------ccCCCCCCcEEEecCCCCCCCc------CCCCCCCCcEEEecCCCCCCCc
Q psy3787           2 LSHLKTLDLSHNKLVSDS--LP--------LFIDMRSLTELNLSYNQLTMLP------VCTDCKNLTHLLLGFNKINNME   65 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~--~~--------~~~~l~~L~~L~l~~n~l~~l~------~~~~~~~L~~L~l~~n~~~~~~   65 (263)
                      .++|+.++++++......  .+        .+..+++|+.|++++|.++...      .+...++|++|++++|.+....
T Consensus        58 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~  137 (344)
T d2ca6a1          58 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  137 (344)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccc
Confidence            457788888876544311  01        1556788888888888876422      2345678888888888764211


Q ss_pred             hhh-------------hhCCCCccEEEeecCcCc-----cccccccCCCCcCEEEccCCcCCC------ccccccCCCcc
Q psy3787          66 NDY-------------FLTLTKLSLLNLKNNKIS-----EVSSNVGDLINLAILDLSDNELTD------VPCELSSLFHL  121 (263)
Q Consensus        66 ~~~-------------~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~n~l~~------l~~~~~~l~~L  121 (263)
                      ...             ....+.++.+.+++|.++     .+...+.....++.++++.|.+..      +...+..++.|
T Consensus       138 ~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L  217 (344)
T d2ca6a1         138 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL  217 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred             cccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhh
Confidence            111             134567888888888765     233345566778888888887763      22335677788


Q ss_pred             cEEEecCCCCCCcchHHHHhH---HHHhhhhhCCCCcccccccCCCCCCCcCCccccccccc--ccCCcceeccc--ccc
Q psy3787         122 KSLFLGGNPIKTVRNDILQDS---KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKY--KLDRTKTLTLC--KVI  194 (263)
Q Consensus       122 ~~L~l~~n~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~--~~~  194 (263)
                      +.|++++|.++..........   ...++.++++.+.+     .+.+      ...+...+.  ..+.|++|+++  .++
T Consensus       218 ~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i-----~~~g------~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         218 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL-----SARG------AAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC-----CHHH------HHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             cccccccccccccccccccccccccccchhhhhhcCcc-----Cchh------hHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            888888887654322222111   22333444433332     1111      111222222  23578888888  443


Q ss_pred             cc-ChhHHhhcC-CccceeEEEeccCCcccc
Q psy3787         195 NI-PESVYMRGM-SSQECTIEINIDKYKLDR  223 (263)
Q Consensus       195 ~l-~~~~~~~~~-~~~~L~~~L~ls~n~l~~  223 (263)
                      .- ...+..... +.+.|+. |++++|++..
T Consensus       287 ~~~~~~l~~~l~~~~~~L~~-L~l~~N~~~~  316 (344)
T d2ca6a1         287 LDAVRTLKTVIDEKMPDLLF-LELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHHHHHHHCTTCCE-EECTTSBSCT
T ss_pred             hHHHHHHHHHHHccCCCCCE-EECCCCcCCC
Confidence            21 111222111 1235888 8998888764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.99  E-value=7e-11  Score=98.00  Aligned_cols=232  Identities=15%  Similarity=0.105  Sum_probs=148.6

Q ss_pred             CCCCCEEEeecCccCCCCccc----cCCCCCCcEEEecCCCCCCCc------------CCCCCCCCcEEEecCCCCCCCc
Q psy3787           2 LSHLKTLDLSHNKLVSDSLPL----FIDMRSLTELNLSYNQLTMLP------------VCTDCKNLTHLLLGFNKINNME   65 (263)
Q Consensus         2 l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~l~~l~------------~~~~~~~L~~L~l~~n~~~~~~   65 (263)
                      ...+++|++++|.+....+..    +...+.|+.++++++......            .+..+++|+.|++++|.++...
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            467899999999886633222    677899999999988765332            2456789999999999887542


Q ss_pred             ----hhhhhCCCCccEEEeecCcCcc-----ccc---------cccCCCCcCEEEccCCcCCC-----ccccccCCCccc
Q psy3787          66 ----NDYFLTLTKLSLLNLKNNKISE-----VSS---------NVGDLINLAILDLSDNELTD-----VPCELSSLFHLK  122 (263)
Q Consensus        66 ----~~~~~~l~~L~~L~l~~~~l~~-----lp~---------~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~  122 (263)
                          ...+...++|++|++++|.++.     +..         .......++.+.+++|.+..     +...+...+.++
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence                2334567899999999998752     111         12356789999999998873     344467788999


Q ss_pred             EEEecCCCCCCcchH-HHHh-H--HHHhhhhhCCCCcccccccCCCCCCCcCCcccccccccccCCcceeccc--ccccc
Q psy3787         123 SLFLGGNPIKTVRND-ILQD-S--KRIISHIKTSRLDYHCQNVDGGGMSSQESTSEINIDKYKLDRTKTLTLC--KVINI  196 (263)
Q Consensus       123 ~L~l~~n~l~~~~~~-~~~~-~--~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l  196 (263)
                      .+++++|.+...... .... .  ...++.++++.+.+     ...+      ...+...+..++.|++|+++  .++.-
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i-----~~~g------~~~L~~~l~~~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-----THLG------SSALAIALKSWPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC-----HHHH------HHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             ccccccccccccccccchhhhhcchhhhcccccccccc-----cccc------cccccccccccccchhhhhhcCccCch
Confidence            999999987753211 1111 1  23455566655542     0000      12344557788999999999  55532


Q ss_pred             C-hhHHhhcC--CccceeEEEeccCCcccc-----cCccccccccccccccccCCce
Q psy3787         197 P-ESVYMRGM--SSQECTIEINIDKYKLDR-----TKTLTLCKVINIPESVYMNRPF  245 (263)
Q Consensus       197 ~-~~~~~~~~--~~~~L~~~L~ls~n~l~~-----ip~~~~~~~~~l~~~~~~~~~~  245 (263)
                      . ..+.....  +.+.|+. |++++|.|+.     +......+...+..+.+.||..
T Consensus       259 g~~~l~~~l~~~~~~~L~~-L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         259 GAAAVVDAFSKLENIGLQT-LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHHHHHHHHHTCSSCCCCE-EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             hhHHHHHHhhhccCCCCCE-EECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            2 12222211  1346999 9999999873     2211111234566667777764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=3.6e-08  Score=83.58  Aligned_cols=106  Identities=24%  Similarity=0.241  Sum_probs=75.7

Q ss_pred             CCCEEEeecCccCCCCccc-cCCCCCCcEEEecCCCCCCC-----c-CCCCCCCCcEEEecCCCCCCCchhhhh-----C
Q psy3787           4 HLKTLDLSHNKLVSDSLPL-FIDMRSLTELNLSYNQLTML-----P-VCTDCKNLTHLLLGFNKINNMENDYFL-----T   71 (263)
Q Consensus         4 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l-----~-~~~~~~~L~~L~l~~n~~~~~~~~~~~-----~   71 (263)
                      +|++||+++++++...+.. +..+++++.|+|++|.++..     . .+..+++|++|++++|.++......+.     .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5788899998888744445 66788888999999987731     1 256778889999998887642212221     1


Q ss_pred             CCCccEEEeecCcCcc-----ccccccCCCCcCEEEccCCcCC
Q psy3787          72 LTKLSLLNLKNNKISE-----VSSNVGDLINLAILDLSDNELT  109 (263)
Q Consensus        72 l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~n~l~  109 (263)
                      ..+|++|++++|+++.     ++..+...++|++|++++|.++
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            2468899999888863     3555677888899998888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.5e-07  Score=79.57  Aligned_cols=108  Identities=18%  Similarity=0.204  Sum_probs=84.1

Q ss_pred             CCCcEEEecCCCCCCCc---CCCCCCCCcEEEecCCCCCCC----chhhhhCCCCccEEEeecCcCcc-----cccccc-
Q psy3787          27 RSLTELNLSYNQLTMLP---VCTDCKNLTHLLLGFNKINNM----ENDYFLTLTKLSLLNLKNNKISE-----VSSNVG-   93 (263)
Q Consensus        27 ~~L~~L~l~~n~l~~l~---~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~l~~-----lp~~~~-   93 (263)
                      .+|+.||+++++++...   -+..+++++.|++++|.++..    ...++..+++|++|++++|+++.     +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            36899999999998532   245678899999999998742    24456789999999999999872     233333 


Q ss_pred             CCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCCCc
Q psy3787          94 DLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIKTV  134 (263)
Q Consensus        94 ~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~  134 (263)
                      ...+|+.|++++|.++.     ++..+..+++|+.|++++|.++..
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~  127 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA  127 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhh
Confidence            34579999999999874     355678899999999999988653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=7.3e-07  Score=65.19  Aligned_cols=80  Identities=28%  Similarity=0.187  Sum_probs=61.4

Q ss_pred             cCCCCCCcEEEecCCCCCCCcC----CCCCCCCcEEEecCCCCCCCchhhhhCCCCccEEEeecCcCcccc--------c
Q psy3787          23 FIDMRSLTELNLSYNQLTMLPV----CTDCKNLTHLLLGFNKINNMENDYFLTLTKLSLLNLKNNKISEVS--------S   90 (263)
Q Consensus        23 ~~~l~~L~~L~l~~n~l~~l~~----~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp--------~   90 (263)
                      ..++++|++|++++|.++.++.    +..+++|+.|++++|.+..+..-.+....+++.+++.+|.+....        .
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            3568899999999999987653    346789999999999999877655556667899999999887432        1


Q ss_pred             cccCCCCcCEEE
Q psy3787          91 NVGDLINLAILD  102 (263)
Q Consensus        91 ~~~~l~~L~~L~  102 (263)
                      .+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            245678888886

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.2e-06  Score=62.53  Aligned_cols=80  Identities=21%  Similarity=0.191  Sum_probs=63.1

Q ss_pred             CCCCCCcEEEecCCCCCCCc--hhhhhCCCCccEEEeecCcCcccccc-ccCCCCcCEEEccCCcCCCcc--------cc
Q psy3787          46 TDCKNLTHLLLGFNKINNME--NDYFLTLTKLSLLNLKNNKISEVSSN-VGDLINLAILDLSDNELTDVP--------CE  114 (263)
Q Consensus        46 ~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~n~l~~l~--------~~  114 (263)
                      ..+++|++|++++|+++.+.  +..+..+++|+.|++++|.++.++.. ......|+.+++++|.+....        ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            46789999999999999765  34567899999999999999988762 234457999999999987432        22


Q ss_pred             ccCCCcccEEE
Q psy3787         115 LSSLFHLKSLF  125 (263)
Q Consensus       115 ~~~l~~L~~L~  125 (263)
                      +..+++|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            56788999875

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.83  E-value=1e-05  Score=59.09  Aligned_cols=106  Identities=12%  Similarity=0.109  Sum_probs=72.0

Q ss_pred             CCCCCCcEEEecCC-CCCC--Cc----CCCCCCCCcEEEecCCCCCC----CchhhhhCCCCccEEEeecCcCcc-----
Q psy3787          24 IDMRSLTELNLSYN-QLTM--LP----VCTDCKNLTHLLLGFNKINN----MENDYFLTLTKLSLLNLKNNKISE-----   87 (263)
Q Consensus        24 ~~l~~L~~L~l~~n-~l~~--l~----~~~~~~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~~~l~~-----   87 (263)
                      .+.+.|+.|+++++ .+..  +.    .+...++|+.|++++|.++.    .....+...+.|++|++++|.++.     
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34577888888764 4542  11    35566778888888887763    223445567788888888888872     


Q ss_pred             ccccccCCCCcCEEEccCCcCCC--------ccccccCCCcccEEEecCC
Q psy3787          88 VSSNVGDLINLAILDLSDNELTD--------VPCELSSLFHLKSLFLGGN  129 (263)
Q Consensus        88 lp~~~~~l~~L~~L~l~~n~l~~--------l~~~~~~l~~L~~L~l~~n  129 (263)
                      +...+...++|++|++++|.+..        +...+...++|+.++++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            34556777889999998876553        2334566788888888665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.60  E-value=6e-05  Score=54.85  Aligned_cols=92  Identities=13%  Similarity=0.107  Sum_probs=69.2

Q ss_pred             CCCCCcEEEecCC-CCCCC----chhhhhCCCCccEEEeecCcCc-----cccccccCCCCcCEEEccCCcCCC-----c
Q psy3787          47 DCKNLTHLLLGFN-KINNM----ENDYFLTLTKLSLLNLKNNKIS-----EVSSNVGDLINLAILDLSDNELTD-----V  111 (263)
Q Consensus        47 ~~~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~n~l~~-----l  111 (263)
                      +.++|++|+++++ .++..    ...++...+.|+.|++++|.++     .+...+...+.|++|++++|.++.     +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4578999999975 46531    2334667788999999999887     234455667889999999999984     3


Q ss_pred             cccccCCCcccEEEecCCCCCCcchHH
Q psy3787         112 PCELSSLFHLKSLFLGGNPIKTVRNDI  138 (263)
Q Consensus       112 ~~~~~~l~~L~~L~l~~n~l~~~~~~~  138 (263)
                      ...+...++|+.|++++|.+..+..+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            445788889999999999877776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.07  E-value=0.00012  Score=53.01  Aligned_cols=108  Identities=16%  Similarity=0.110  Sum_probs=74.5

Q ss_pred             cCCCCCCcEEEecC-CCCCC--Cc----CCCCCCCCcEEEecCCCCCCCc----hhhhhCCCCccEEEeecCcCc-----
Q psy3787          23 FIDMRSLTELNLSY-NQLTM--LP----VCTDCKNLTHLLLGFNKINNME----NDYFLTLTKLSLLNLKNNKIS-----   86 (263)
Q Consensus        23 ~~~l~~L~~L~l~~-n~l~~--l~----~~~~~~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~~~l~-----   86 (263)
                      ..+.+.|++|++++ +.++.  +.    .+...++|++|++++|.++...    ...+.....++.+++.+|.++     
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            34668888888887 44652  11    3556788888999988876422    234556778899999988876     


Q ss_pred             cccccccCCCCcCEEEc--cCCcCCC-----ccccccCCCcccEEEecCCC
Q psy3787          87 EVSSNVGDLINLAILDL--SDNELTD-----VPCELSSLFHLKSLFLGGNP  130 (263)
Q Consensus        87 ~lp~~~~~l~~L~~L~l--~~n~l~~-----l~~~~~~l~~L~~L~l~~n~  130 (263)
                      .+...+...++++.+++  ++|.+..     +...+...+.|+.|++..+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            34455667778887665  4566653     44556788899999987664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.03  E-value=0.00024  Score=51.41  Aligned_cols=41  Identities=20%  Similarity=0.108  Sum_probs=19.2

Q ss_pred             ccCCCCcCEEEccCCcCCC-----ccccccCCCcccEEEecCCCCC
Q psy3787          92 VGDLINLAILDLSDNELTD-----VPCELSSLFHLKSLFLGGNPIK  132 (263)
Q Consensus        92 ~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~  132 (263)
                      +...+.|++|++++|.++.     +...+...+.++.+++++|.+.
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            3344455555555555442     2222344455555555555433