Psyllid ID: psy4303

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
Protein Sequence
MGANNQGVKSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETVLEGGGELGVHMYLIIFLKFVQSVIPTIEYDFTQNFTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRAIKSKASNQTQSCNKPNSTEEEDDDDEEALDMEDFEESGFLDEQDPSIANIPPEKQSPSSPAGDSQECGDIVRTRTYDLHITYDKYYQTPRLWLYGYNERFKGKENLVLISKWCNRMQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKDIAIEDKISEISLDASTGWVDTHHYDETTGKDIAIEDKISEISLDATT
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHccccccccccEEEcccccccccccEEEcccHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEEccccEEEcccccccHHHHHHHHHHccccccEEEccccccccccccEEEcccccccccccccccccccccccccccccHHHcccHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHccccEEEcccEEEccccccccccccccccEEEEEcccccHHHHcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHccEEEEcccccccccccccEccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHcccEEEEccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHccccccccccHcccccHHcccccccccccccccEEEEEEEEEEEEEcccccccEEEEEEccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHcccccEcHHHHHHHcccEEEcccccccccccHHccccccccccEEEEEcccccHHHHHHHcccccHHHEEEccccccccEEcccccccccccccHHHHHcccccccccccccccccHcccccccHHHccHHHccccccc
Coil and Loop (DISEMBL)
mgannqgvksrapltvdQMYEDVSQDYAKKTvtmeshphlpgppmasihpcrHAEVMKKIIETVLEGGGELGVHMYLIIFLKFVQsviptieydftqnftVDQMYEDVSQDYAKKTvtmeshphlpgppmasihpcraikskasnqtqscnkpnsteeeddddeealdmedfeesgfldeqdpsianippekqspsspagdsqecgdivrtrtyDLHITydkyyqtprlwlygynerfkgKENLVLISKWCNRMQSVINSVKGTALGVAEYLtpvlkeskfretgvvtpeeFVAAGdhlvhhcptwqwasgdeskaksylppnkqflitknvpcprrckqidyCEEKQKIIENeqdeegwvdthhydettgkdiaieDKISEisldastgwvdthhydettgkdiaieDKISEISLDATT
Flexible Loop (DISEMBL)
mgannqgvksrapltvDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETVLEGGGELGVHMYLIIFLKFVQSVIPTIEYDFTQNFTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRAIKSKasnqtqscnkpnsteeeddddeEALDMEDFEESGFLDEQDPSIANIppekqspsspagdsqecgDIVRTRTYDLHITYDKYYQTPRLWLYGYNERFKGKENLVLISKWCNRMQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSYLPPNKQflitknvpcprrCKQIDYCEEKQKIieneqdeegwvdTHHYDETTGKDIAIEDKISEISldastgwvdthhydettgkdiaiedkiseisldatt
Low Complexity Region (SEG)
MGANNQGVKSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETvlegggelgvHMYLIIFLKFVQSVIPTIEYDFTQNFTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRAIKSKASNQTQSCNKPNSTeeeddddeealdmedfeeSGFLDEQDPSIANIPPEKQSPSSPAGDSQECGDIVRTRTYDLHITYDKYYQTPRLWLYGYNERFKGKENLVLISKWCNRMQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKDIAIEDKISEISLDASTGWVDTHHYDETTGKDIAIEDKISEISLDATT
Disordered region (IsUnstruct)
***********************************************IHPCRHAEVMKKIIETVLEGGGELGVHMYLIIFLKFVQSVIPTIEYDFTQNFTVDQMYEDVSQ**********************************************************************************************CGDIVRTRTYDLHITYDKYYQTPRLWLYGYNERFKGKENLVLISKWCNRMQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGD*****SYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKDIAIEDKISEISLDASTGWVDTHHYDETTGKDIAI*************
Disordered Region (DISOPRED)
MGA****VKSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETVLEGGGELGVHMYLIIFLKFVQSVIPTIEYDFTQNFTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASI***********************************MEDFEESGFLDEQDPS*********************GDIVRTRTYDLHITYDKYYQTPRLWLYGYNERFKGKENLVLISKWCNRMQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDES*AKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVD***************************************************I******
Disordered Region (DISEMBL)
**********RAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETVLEGGGELGVHMYLIIFLKFVQSVIPTIEYDFTQNFTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRAIK***************************DMEDFEESGFLDEQDPSIANIP***************CGDIVRTRTYDLHITYDKYYQTPRLWLYGYNERFKGKENLVLISKWCNRMQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKDIAIEDKISEISLDASTGWVDTHHYDETTGKDIAIEDKISEISLDATT
Disordered Region (DISPRO)
*********SRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETVLEGGGELGVHMYLIIFLKFVQSVIPTIEYDFTQNFTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRAIKSKASNQTQ**************************S*FLDEQDPSIANIP****************GDIVRTRTYDLHITYDKYYQTPRLWLYGYNERFKGKENLVLISKWCNRMQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHH*******************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGANNQGVKSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETVLEGGGELGVHMYLIIFLKFVQSVIPTIEYDFTQNFTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRAIKSKASNQTQSCNKPNSTEEEDDDDEEALDMEDFEESGFLDEQDPSIANIPPEKQSPSSPAGDSQECGDIVRTRTYDLHITYDKYYQTPRLWLYGYNERFKGKENLVLISKWCNRMQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKDIAIEDKISEISLDASTGWVDTHHYDETTGKDIAIEDKISEISLDATT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	420	2.2.26 [Sep-21-2011]
Q6PFS7	317	Ubiquitin-like-conjugatin	yes	N/A	0.307	0.406	0.676	5e-49
Q9CPX6	314	Ubiquitin-like-conjugatin	yes	N/A	0.309	0.414	0.656	3e-47
Q6AZ50	314	Ubiquitin-like-conjugatin	yes	N/A	0.309	0.414	0.656	3e-47
Q9NT62	314	Ubiquitin-like-conjugatin	yes	N/A	0.307	0.410	0.661	5e-47
Q0VCL3	314	Ubiquitin-like-conjugatin	yes	N/A	0.309	0.414	0.649	1e-46
Q5I0S6	312	Ubiquitin-like-conjugatin	yes	N/A	0.304	0.410	0.646	2e-46
Q6GQE7	313	Ubiquitin-like-conjugatin	N/A	N/A	0.307	0.412	0.631	1e-45
P0CM34	385	Autophagy-related protein	yes	N/A	0.264	0.288	0.446	4e-25
P0CM35	385	Autophagy-related protein	N/A	N/A	0.264	0.288	0.446	4e-25
Q0WWQ1	313	Autophagy-related protein	yes	N/A	0.219	0.293	0.580	1e-23

>sp|Q6PFS7|ATG3_DANRE Ubiquitin-like-conjugating enzyme ATG3 OS=Danio rerio GN=atg3 PE=2 SV=1

 Score =  195 bits (496), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 90/133 (67%), Positives = 110/133 (82%), Gaps = 4/133 (3%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           MQ+VINSVKGTALGVAE+LTPVLKESKF+ETGV+TPEEFVAAGDHLVHHCPTW+WASG+E
Sbjct: 1   MQNVINSVKGTALGVAEFLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWKWASGEE 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
           +K K YLP +KQFL+T+NVPC +RCKQ++Y +E + IIE +  + GWVDT H    TG  
Sbjct: 61  AKVKPYLPNDKQFLLTRNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTFHNSGVTG-- 118

Query: 374 IAIEDKISEISLD 386
             + + + EISLD
Sbjct: 119 --VTEAVREISLD 129

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of atg8-like proteins (gabarap, gabarapl1, gabarapl2 or map1lc3a) to phosphatidylethanolamine (PE). PE-conjugation to atg8-like proteins is essential for autophagy. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of atg12 to itself, atg12 conjugation to atg3 playing a role in mitochondrial homeostasis but not in autophagy.
Danio rerio (taxid: 7955)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9CPX6|ATG3_MOUSE Ubiquitin-like-conjugating enzyme ATG3 OS=Mus musculus GN=Atg3 PE=1 SV=1

 Score =  189 bits (481), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/134 (65%), Positives = 110/134 (82%), Gaps = 4/134 (2%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           MQ+VIN+VKG AL VAEYLTPVLKESKF+ETGV+TPEEFVAAGDHLVHHCPTWQWA+G+E
Sbjct: 1   MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
            K K+YLP +KQFL+TKNVPC +RCKQ++Y +E + IIE +  + GWVDT+H    TG  
Sbjct: 61  LKVKAYLPTDKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITG-- 118

Query: 374 IAIEDKISEISLDA 387
             I + + EI+L++
Sbjct: 119 --ITEAVKEITLES 130

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of ATG8-like proteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A) to phosphatidylethanolamine (PE). PE-conjugation to ATG8-like proteins is essential for autophagy. Preferred substrate is MAP1LC3A. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of ATG12 to itself, ATG12 conjugation to ATG3 playing a role in mitochondrial homeostasis but not in autophagy. ATG7 (E1-like enzyme) facilitates this reaction by forming an E1-E2 complex with ATG3.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6AZ50|ATG3_RAT Ubiquitin-like-conjugating enzyme ATG3 OS=Rattus norvegicus GN=Atg3 PE=2 SV=1

 Score =  189 bits (480), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/134 (65%), Positives = 109/134 (81%), Gaps = 4/134 (2%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           MQ+VIN+VKG AL VAEYLTPVLKESKF+ETGV+TPEEFVAAGDHLVHHCPTWQWA+G+E
Sbjct: 1   MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
            K K+YLP  KQFL+TKNVPC +RCKQ++Y +E + IIE +  + GWVDT+H    TG  
Sbjct: 61  LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITG-- 118

Query: 374 IAIEDKISEISLDA 387
             I + + EI+L++
Sbjct: 119 --ITEAVKEITLES 130

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of ATG8-like proteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A) to phosphatidylethanolamine (PE). PE-conjugation to ATG8-like proteins is essential for autophagy. Preferred substrate is MAP1LC3A. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of ATG12 to itself, ATG12 conjugation to ATG3 playing a role in mitochondrial homeostasis but not in autophagy. ATG7 (E1-like enzyme) facilitates this reaction by forming an E1-E2 complex with ATG3.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9NT62|ATG3_HUMAN Ubiquitin-like-conjugating enzyme ATG3 OS=Homo sapiens GN=ATG3 PE=1 SV=1

 Score =  189 bits (479), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 88/133 (66%), Positives = 108/133 (81%), Gaps = 4/133 (3%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           MQ+VIN+VKG AL VAEYLTPVLKESKF+ETGV+TPEEFVAAGDHLVHHCPTWQWA+G+E
Sbjct: 1   MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
            K K+YLP  KQFL+TKNVPC +RCKQ++Y +E + IIE +  + GWVDT+H    TG  
Sbjct: 61  LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITG-- 118

Query: 374 IAIEDKISEISLD 386
             I + + EI+L+
Sbjct: 119 --ITEAVKEITLE 129

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of ATG8-like proteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A) to phosphatidylethanolamine (PE). PE-conjugation to ATG8-like proteins is essential for autophagy. Preferred substrate is MAP1LC3A. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of ATG12 to itself, ATG12 conjugation to ATG3 playing a role in mitochondrial homeostasis but not in autophagy. ATG7 (E1-like enzyme) facilitates this reaction by forming an E1-E2 complex with ATG3.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0VCL3|ATG3_BOVIN Ubiquitin-like-conjugating enzyme ATG3 OS=Bos taurus GN=ATG3 PE=2 SV=1

 Score =  187 bits (476), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/134 (64%), Positives = 108/134 (80%), Gaps = 4/134 (2%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           MQ+VIN+VKG AL VAEYLTPVLKESKF+ETGV+TPEEFVAAGDHLVHHCPTWQWA+G+E
Sbjct: 1   MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
            K K+YLP  KQFL+TKNVPC +RCKQ++Y +E + IIE +  + GWVDT+H     G  
Sbjct: 61  LKVKAYLPSGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGIAG-- 118

Query: 374 IAIEDKISEISLDA 387
             I + + EI+L++
Sbjct: 119 --ITEAVKEITLES 130

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of ATG8-like proteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A) to phosphatidylethanolamine (PE). PE-conjugation to ATG8-like proteins is essential for autophagy. Preferred substrate is MAP1LC3A. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of ATG12 to itself, ATG12 conjugation to ATG3 playing a role in mitochondrial homeostasis but not in autophagy. ATG7 (E1-like enzyme) facilitates this reaction by forming an E1-E2 complex with ATG3.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5I0S6|ATG3_XENTR Ubiquitin-like-conjugating enzyme ATG3 OS=Xenopus tropicalis GN=atg3 PE=2 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/133 (64%), Positives = 109/133 (81%), Gaps = 5/133 (3%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           MQSVIN+VKG AL VAEYLTPVLKESKF+ETGV+TPEEF+AAGDHLVHHCPTWQW++G+E
Sbjct: 1   MQSVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFLAAGDHLVHHCPTWQWSAGEE 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
           SK K YLP +KQFL+TKNVPC +RCKQ++Y +E++ IIE +  + GWVDT H+  T    
Sbjct: 61  SKIKPYLPNDKQFLMTKNVPCYKRCKQMEYSDEQEAIIEEDDGDGGWVDTFHHSLT---- 116

Query: 374 IAIEDKISEISLD 386
             + + + EI+L+
Sbjct: 117 -GVTEAVKEITLE 128

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of atg8-like proteins (gabarap, gabarapl1, gabarapl2 or map1lc3a) to phosphatidylethanolamine (PE). PE-conjugation to atg8-like proteins is essential for autophagy. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of atg12 to itself, atg12 conjugation to atg3 playing a role in mitochondrial homeostasis but not in autophagy.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6GQE7|ATG3_XENLA Ubiquitin-like-conjugating enzyme ATG3 OS=Xenopus laevis GN=atg3 PE=2 SV=1

 Score =  184 bits (467), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/133 (63%), Positives = 109/133 (81%), Gaps = 4/133 (3%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           MQ+V N+VKG AL VAEYLTPVLKESKF+ETGV+TPEEF+AAGDHLVHHCPTWQW++G+E
Sbjct: 1   MQNVFNTVKGKALEVAEYLTPVLKESKFKETGVITPEEFLAAGDHLVHHCPTWQWSAGEE 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
           SK K YLP +KQFL+TKNVPC +RCKQ++Y +E++ IIE +  + GWVDT H+   +G  
Sbjct: 61  SKIKPYLPNDKQFLMTKNVPCYKRCKQMEYSDEQEAIIEEDDGDGGWVDTFHHTGLSG-- 118

Query: 374 IAIEDKISEISLD 386
             + + + EI+L+
Sbjct: 119 --VTEAVKEITLE 129

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of atg8-like proteins (gabarap, gabarapl1, gabarapl2 or map1lc3a) to phosphatidylethanolamine (PE). PE-conjugation to atg8-like proteins is essential for autophagy. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of atg12 to itself, atg12 conjugation to atg3 playing a role in mitochondrial homeostasis but not in autophagy.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P0CM34|ATG3_CRYNJ Autophagy-related protein 3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ATG3 PE=3 SV=1

 Score =  116 bits (290), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 77/121 (63%), Gaps = 10/121 (8%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           M + + +++     V +YL+PVL+ESKF+E G +TPEEFVAAGD L    P WQW  G+ 
Sbjct: 1   MNNPLLAIQSQYWAVRDYLSPVLRESKFKEHGRITPEEFVAAGDFLTFKFPVWQWEKGES 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYC---EEKQKIIENEQDEE-------GWVDT 363
           S+A+ +LPP+KQ+L+T+NVPC RR   +DY    E+ +K++    D E        WV T
Sbjct: 61  SRARDFLPPDKQYLVTRNVPCLRRATAVDYTNADEDAEKLLSFLDDAEEAPGPDDDWVAT 120

Query: 364 H 364
           H
Sbjct: 121 H 121

Putative E2-like conjugating enzyme involved in autophagy and for the cytoplasm to vacuole transport (Cvt).

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CM35|ATG3_CRYNB Autophagy-related protein 3 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=ATG3 PE=3 SV=1

 Score =  116 bits (290), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 77/121 (63%), Gaps = 10/121 (8%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           M + + +++     V +YL+PVL+ESKF+E G +TPEEFVAAGD L    P WQW  G+ 
Sbjct: 1   MNNPLLAIQSQYWAVRDYLSPVLRESKFKEHGRITPEEFVAAGDFLTFKFPVWQWEKGES 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYC---EEKQKIIENEQDEE-------GWVDT 363
           S+A+ +LPP+KQ+L+T+NVPC RR   +DY    E+ +K++    D E        WV T
Sbjct: 61  SRARDFLPPDKQYLVTRNVPCLRRATAVDYTNADEDAEKLLSFLDDAEEAPGPDDDWVAT 120

Query: 364 H 364
           H
Sbjct: 121 H 121

Putative E2-like conjugating enzyme involved in autophagy and for the cytoplasm to vacuole transport (Cvt).

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q0WWQ1|ATG3_ARATH Autophagy-related protein 3 OS=Arabidopsis thaliana GN=ATG3 PE=1 SV=2

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 69/93 (74%), Gaps = 1/93 (1%)

Query: 9   KSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETVLEGG 68
           +SR  L  + + EDVSQD+A+KTVT+E HPHLPG   AS+HPCRH  VMKKII+ ++  G
Sbjct: 217 ESRMLLQPELVMEDVSQDHARKTVTIEDHPHLPGK-HASVHPCRHGAVMKKIIDVLMSRG 275

Query: 69  GELGVHMYLIIFLKFVQSVIPTIEYDFTQNFTV 101
            E  V  YL +FLKF+ SVIPTIEYD+T +F +
Sbjct: 276 VEPEVDKYLFLFLKFMASVIPTIEYDYTMDFDL 308

E2 conjugating enzyme responsible for the E2-like covalent binding of phosphatidylethanolamine to the C-terminal Gly of ATG8. This step is required for the membrane association of ATG8. The formation of the ATG8-phosphatidylethanolamine conjugate is essential for autophagy and for the cytoplasm to vacuole transport (Cvt).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
270006613	316	hypothetical protein TcasGA2_TC010917 [T	0.323	0.430	0.722	6e-54
242021253	338	conserved hypothetical protein [Pediculu	0.311	0.387	0.705	9e-54
340708493	323	PREDICTED: ubiquitin-like-conjugating en	0.314	0.408	0.733	1e-53
350413257	323	PREDICTED: ubiquitin-like-conjugating en	0.314	0.408	0.733	1e-53
189236943	318	PREDICTED: similar to Aut1 CG6877-PA [Tr	0.319	0.421	0.725	2e-53
215820604	323	autophagy related protein Atg3-like prot	0.316	0.411	0.727	4e-53
380023378	327	PREDICTED: ubiquitin-like-conjugating en	0.314	0.403	0.725	8e-53
383861904	317	PREDICTED: ubiquitin-like-conjugating en	0.314	0.416	0.718	9e-53
66564768	327	PREDICTED: autophagy 1 [Apis mellifera]	0.314	0.403	0.725	1e-52
332375098	314	unknown [Dendroctonus ponderosae]	0.314	0.420	0.725	2e-52

>gi|270006613|gb|EFA03061.1| hypothetical protein TcasGA2_TC010917 [Tribolium castaneum]

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 99/137 (72%), Positives = 120/137 (87%), Gaps = 1/137 (0%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           MQ+VINSVKGTALGVAEYLTPVLKESKFRETGV+TPEEFVAAGDHLVHHCPTWQWA+GDE
Sbjct: 1   MQNVINSVKGTALGVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHCPTWQWAAGDE 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
           SKAK YLP +KQFL+T+NVPC RRC+Q++Y E+ ++IIE++  + GWVDTHHYD+     
Sbjct: 61  SKAKPYLPKDKQFLVTRNVPCTRRCEQMEYSEDLERIIESDDADNGWVDTHHYDQDQTTA 120

Query: 374 IAIEDKISEISLDASTG 390
           + +E+KISE++L  S G
Sbjct: 121 V-VEEKISEMTLSNSKG 136

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021253|ref|XP_002431060.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516289|gb|EEB18322.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  217 bits (552), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 96/136 (70%), Positives = 121/136 (88%), Gaps = 5/136 (3%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           MQSV+N+VKGTALGVAE+LTP+LKESKFRETGV+TPEEFVAAGDHLVHHCPTWQWASGD+
Sbjct: 1   MQSVLNTVKGTALGVAEFLTPILKESKFRETGVLTPEEFVAAGDHLVHHCPTWQWASGDD 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
           +K+K YLP NKQFLIT+NVPC RRCKQ++YCE+ +KIIE++  + GWVDTHHYD +    
Sbjct: 61  TKSKPYLPKNKQFLITRNVPCSRRCKQMEYCEDNEKIIESDDADNGWVDTHHYDTS---- 116

Query: 374 IAIEDKISEISLDAST 389
             I++K+SE+++++ T
Sbjct: 117 -VIDEKVSEMNIESQT 131

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708493|ref|XP_003392860.1| PREDICTED: ubiquitin-like-conjugating enzyme ATG3-like [Bombus terrestris]

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 99/135 (73%), Positives = 117/135 (86%), Gaps = 3/135 (2%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           MQSVINSVKGTALGVAEYLTPVLKESKFRETGV+TPEEFVAAGDHLVHHCPTWQWA+GDE
Sbjct: 1   MQSVINSVKGTALGVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHCPTWQWATGDE 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
            + KSYLP  KQFL+T+NVPC RRCKQI+Y +E++ IIE +  E GWVDTHHYD + G  
Sbjct: 61  DRVKSYLPKTKQFLLTRNVPCTRRCKQIEYSKEQECIIEEDDPEGGWVDTHHYDSSLG-- 118

Query: 374 IAIEDKISEISLDAS 388
             IE++++E++LD +
Sbjct: 119 -GIEERVTEMTLDET 132

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413257|ref|XP_003489937.1| PREDICTED: ubiquitin-like-conjugating enzyme ATG3-like [Bombus impatiens]

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 99/135 (73%), Positives = 117/135 (86%), Gaps = 3/135 (2%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           MQSVINSVKGTALGVAEYLTPVLKESKFRETGV+TPEEFVAAGDHLVHHCPTWQWA+GDE
Sbjct: 1   MQSVINSVKGTALGVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHCPTWQWATGDE 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
            + KSYLP  KQFL+T+NVPC RRCKQI+Y +E++ IIE +  E GWVDTHHYD + G  
Sbjct: 61  DRIKSYLPKTKQFLLTRNVPCTRRCKQIEYSKEQECIIEEDDPEGGWVDTHHYDSSLG-- 118

Query: 374 IAIEDKISEISLDAS 388
             IE++++E++LD +
Sbjct: 119 -GIEERVTEMTLDET 132

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236943|ref|XP_967286.2| PREDICTED: similar to Aut1 CG6877-PA [Tribolium castaneum]

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/135 (72%), Positives = 119/135 (88%), Gaps = 1/135 (0%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           MQ+VINSVKGTALGVAEYLTPVLKESKFRETGV+TPEEFVAAGDHLVHHCPTWQWA+GDE
Sbjct: 1   MQNVINSVKGTALGVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHCPTWQWAAGDE 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
           SKAK YLP +KQFL+T+NVPC RRC+Q++Y E+ ++IIE++  + GWVDTHHYD+     
Sbjct: 61  SKAKPYLPKDKQFLVTRNVPCTRRCEQMEYSEDLERIIESDDADNGWVDTHHYDQDQTTA 120

Query: 374 IAIEDKISEISLDAS 388
           + +E+KISE++L  S
Sbjct: 121 V-VEEKISEMTLSNS 134

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|215820604|ref|NP_001135961.1| autophagy related protein Atg3-like protein [Bombyx mori] gi|213390044|gb|ACJ46061.1| autophagy related protein Atg3-like protein [Bombyx mori]

 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 119/136 (87%), Gaps = 3/136 (2%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           MQSVIN+VKGTALGVA YLTPVLKESKFRETGV+TPEEFVAAGDHLVHHCPTWQWA G+E
Sbjct: 1   MQSVINTVKGTALGVAGYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHCPTWQWAKGEE 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEE-GWVDTHHYDETTGK 372
           +K + YLP +KQFLIT+NVPC RRCKQI+YCE+K+K+IE+E D + GWVDTHHYD     
Sbjct: 61  AKIRPYLPADKQFLITRNVPCYRRCKQIEYCEDKEKVIEDENDADGGWVDTHHYDNAGSP 120

Query: 373 DIAIEDKISEISLDAS 388
             A+E+K+ E++L+A+
Sbjct: 121 --ALEEKVCEMTLEAA 134

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023378|ref|XP_003695500.1| PREDICTED: ubiquitin-like-conjugating enzyme ATG3-like [Apis florea]

 Score =  214 bits (544), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 98/135 (72%), Positives = 116/135 (85%), Gaps = 3/135 (2%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           MQSVINSVKGTALGVAEYLTPVLKESKFRETGV+TPEEFVAAGDHLVHHCPTWQWA+GDE
Sbjct: 1   MQSVINSVKGTALGVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHCPTWQWATGDE 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
            + KSYLP  KQFL+T+NVPC RRCKQI+Y +E++ IIE +  E GWVDTHHYD +    
Sbjct: 61  DRVKSYLPKKKQFLLTRNVPCTRRCKQIEYSKEQECIIEADDPEGGWVDTHHYDTSLS-- 118

Query: 374 IAIEDKISEISLDAS 388
             IE++++E++LD +
Sbjct: 119 -GIEERVTEMTLDET 132

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861904|ref|XP_003706424.1| PREDICTED: ubiquitin-like-conjugating enzyme ATG3-like [Megachile rotundata]

 Score =  214 bits (544), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 117/135 (86%), Gaps = 3/135 (2%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           MQSVINSVKGTALGVAEYLTPVLKESKFRETGV+TPEEFVAAGDHLVHHCPTWQWA+GDE
Sbjct: 1   MQSVINSVKGTALGVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHCPTWQWATGDE 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
           ++ KSYLP NKQFL+ +NVPC RRCKQI+Y ++++ IIE +  E GWVDTHHYD +    
Sbjct: 61  ARIKSYLPKNKQFLVIRNVPCSRRCKQIEYSKDQECIIEADDPEGGWVDTHHYDTSLS-- 118

Query: 374 IAIEDKISEISLDAS 388
             IE++++E++LD +
Sbjct: 119 -GIEERVTEMTLDET 132

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66564768|ref|XP_624693.1| PREDICTED: autophagy 1 [Apis mellifera]

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/135 (72%), Positives = 116/135 (85%), Gaps = 3/135 (2%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           MQSVINSVKGTALGVAEYLTPVLKESKFRETGV+TPEEFVAAGDHLVHHCPTWQWA+GDE
Sbjct: 1   MQSVINSVKGTALGVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHCPTWQWATGDE 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
            + KSYLP  KQFL+T+NVPC RRCKQI+Y +E++ IIE +  E GWVDTHHYD +    
Sbjct: 61  DRVKSYLPKKKQFLLTRNVPCTRRCKQIEYSKEQECIIEADDPEGGWVDTHHYDMSLS-- 118

Query: 374 IAIEDKISEISLDAS 388
             IE++++E++LD +
Sbjct: 119 -GIEERVTEMTLDET 132

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375098|gb|AEE62690.1| unknown [Dendroctonus ponderosae]

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/135 (72%), Positives = 116/135 (85%), Gaps = 3/135 (2%)

Query: 254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
           MQ+VINSVKGTAL V EYLTPVLKESKFRETGV+TPEEFVAAGDHLVHHCPTWQWA GDE
Sbjct: 1   MQNVINSVKGTALAVGEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHCPTWQWAVGDE 60

Query: 314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
           SKAK YLP  KQFLITKNVPC RRC+Q++Y ++ ++IIE++  + GWVDTHHYD+     
Sbjct: 61  SKAKPYLPKRKQFLITKNVPCSRRCEQMEYSDDLERIIESDDADNGWVDTHHYDKDNA-- 118

Query: 374 IAIEDKISEISLDAS 388
            +IEDKISE++L+ +
Sbjct: 119 -SIEDKISEMTLEKA 132

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
FB|FBgn0036813	330	Aut1 "Aut1" [Drosophila melano	0.380	0.484	0.584	1.6e-47
ZFIN|ZDB-GENE-030131-8576	317	apg3l "APG3 autophagy 3-like"	0.307	0.406	0.676	2.6e-47
MGI|MGI:1915091	314	Atg3 "autophagy related 3" [Mu	0.397	0.531	0.558	1.4e-46
UNIPROTKB|Q9NT62	314	ATG3 "Ubiquitin-like-conjugati	0.395	0.528	0.560	1.8e-46
UNIPROTKB|Q0VCL3	314	ATG3 "Ubiquitin-like-conjugati	0.397	0.531	0.552	3.8e-46
UNIPROTKB|F1SLS7	314	ATG3 "Autophagy-related protei	0.314	0.420	0.659	3.8e-46
RGD|708464	314	Atg3 "autophagy related 3" [Ra	0.397	0.531	0.552	3.8e-46
UNIPROTKB|E1C502	313	ATG3 "Autophagy-related protei	0.309	0.415	0.664	7.9e-46
UNIPROTKB|Q5I0S6	312	atg3 "Ubiquitin-like-conjugati	0.340	0.458	0.596	1.3e-45
UNIPROTKB|F1PJ26	312	ATG3 "Autophagy-related protei	0.388	0.522	0.553	3.4e-45

FB|FBgn0036813 Aut1 "Aut1" [Drosophila melanogaster (taxid:7227)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 97/166 (58%), Positives = 126/166 (75%)

Query:   254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
             MQSV+N+VKGTAL VAEYLTPVLKESKFRETGV+TPEEFVAAGDHLVHHCPTWQWA+GDE
Sbjct:     1 MQSVLNTVKGTALNVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHCPTWQWAAGDE 60

Query:   314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHY-DETTGK 372
             +K K YLP +KQFLIT+NVPC RRCKQ++Y  E + ++E E  + GWV+TH   D+ T +
Sbjct:    61 TKTKPYLPKDKQFLITRNVPCYRRCKQMEYVGE-ETLVEEESGDGGWVETHQLNDDGTTQ 119

Query:   373 DIAIEDKISEISLDASTGWVDTHHYDETT-GKDIAIEDKISEISLD 417
                +EDKI E++++ +   + T   D++  G     ED+  + ++D
Sbjct:   120 ---LEDKICELTMEETKEEMHTPDSDKSAPGAGGQAEDEDDDEAID 162

GO:0006914 "autophagy" evidence=IMP

ZFIN|ZDB-GENE-030131-8576 apg3l "APG3 autophagy 3-like" [Danio rerio (taxid:7955)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 90/133 (67%), Positives = 110/133 (82%)

Query:   254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
             MQ+VINSVKGTALGVAE+LTPVLKESKF+ETGV+TPEEFVAAGDHLVHHCPTW+WASG+E
Sbjct:     1 MQNVINSVKGTALGVAEFLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWKWASGEE 60

Query:   314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
             +K K YLP +KQFL+T+NVPC +RCKQ++Y +E + IIE +  + GWVDT H    TG  
Sbjct:    61 AKVKPYLPNDKQFLLTRNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTFHNSGVTG-- 118

Query:   374 IAIEDKISEISLD 386
               + + + EISLD
Sbjct:   119 --VTEAVREISLD 129

GO:0000045 "autophagic vacuole assembly" evidence=ISS

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019777 "Atg12 ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

MGI|MGI:1915091 Atg3 "autophagy related 3" [Mus musculus (taxid:10090)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 96/172 (55%), Positives = 120/172 (69%)

Query:   254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
             MQ+VIN+VKG AL VAEYLTPVLKESKF+ETGV+TPEEFVAAGDHLVHHCPTWQWA+G+E
Sbjct:     1 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE 60

Query:   314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTG-- 371
              K K+YLP +KQFL+TKNVPC +RCKQ++Y +E + IIE +  + GWVDT+H    TG  
Sbjct:    61 LKVKAYLPTDKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT 120

Query:   372 ---KDIAIEDKISEISLDASTGWVDTHHYDETTGKDIAIEDKISEISLDATT 420
                K+I +E K S    D S    +    DE    D+   ++   +  D  T
Sbjct:   121 EAVKEITLESKDSIKLQDCSALCDEEDEEDEGEAADMEEYEESGLLETDEAT 172

GO:0000045 "autophagic vacuole assembly" evidence=IMP

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006464 "cellular protein modification process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0019776 "Atg8 ligase activity" evidence=IMP

GO:0019777 "Atg12 ligase activity" evidence=IDA

GO:0019787 "small conjugating protein ligase activity" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IMP

UNIPROTKB|Q9NT62 ATG3 "Ubiquitin-like-conjugating enzyme ATG3" [Homo sapiens (taxid:9606)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 97/173 (56%), Positives = 121/173 (69%)

Query:   254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
             MQ+VIN+VKG AL VAEYLTPVLKESKF+ETGV+TPEEFVAAGDHLVHHCPTWQWA+G+E
Sbjct:     1 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE 60

Query:   314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTG-- 371
              K K+YLP  KQFL+TKNVPC +RCKQ++Y +E + IIE +  + GWVDT+H    TG  
Sbjct:    61 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT 120

Query:   372 ---KDIAIEDKISEISL-DASTGWVDTHHYDETTGKDIAIEDKISEISLDATT 420
                K+I +E+K   I L D S    +    DE    D+   ++   +  D  T
Sbjct:   121 EAVKEITLENK-DNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEAT 172

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0019899 "enzyme binding" evidence=IPI

GO:0019777 "Atg12 ligase activity" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISS

GO:0000045 "autophagic vacuole assembly" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=ISS

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=IPI

GO:0006464 "cellular protein modification process" evidence=IDA

GO:0019787 "small conjugating protein ligase activity" evidence=IDA

UNIPROTKB|Q0VCL3 ATG3 "Ubiquitin-like-conjugating enzyme ATG3" [Bos taurus (taxid:9913)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 95/172 (55%), Positives = 118/172 (68%)

Query:   254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
             MQ+VIN+VKG AL VAEYLTPVLKESKF+ETGV+TPEEFVAAGDHLVHHCPTWQWA+G+E
Sbjct:     1 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE 60

Query:   314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTG-- 371
              K K+YLP  KQFL+TKNVPC +RCKQ++Y +E + IIE +  + GWVDT+H     G  
Sbjct:    61 LKVKAYLPSGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGIAGIT 120

Query:   372 ---KDIAIEDKISEISLDASTGWVDTHHYDETTGKDIAIEDKISEISLDATT 420
                K+I +E K S    D S    +    DE    D+   ++   +  D  T
Sbjct:   121 EAVKEITLESKDSIKLQDCSALCEEEEEEDEGEAADMEEYEESGLLETDEAT 172

GO:0000045 "autophagic vacuole assembly" evidence=ISS

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019777 "Atg12 ligase activity" evidence=ISS

GO:0019899 "enzyme binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1SLS7 ATG3 "Autophagy-related protein 3" [Sus scrofa (taxid:9823)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 91/138 (65%), Positives = 112/138 (81%)

Query:   254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
             MQ+VIN+VKG AL VAEYLTPVLKESKF+ETGV+TPEEFVAAGDHLVHHCPTWQWA+G+E
Sbjct:     1 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE 60

Query:   314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
              K K+YLP  KQFL+TKNVPC +RCKQ++Y +E + IIE +  + GWVDT+H    TG  
Sbjct:    61 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYH---NTG-- 115

Query:   374 IA-IEDKISEISLDASTG 390
             IA I + + EI+L++  G
Sbjct:   116 IAGITEAVKEITLESKDG 133

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0019777 "Atg12 ligase activity" evidence=IEA

GO:0019776 "Atg8 ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

RGD|708464 Atg3 "autophagy related 3" [Rattus norvegicus (taxid:10116)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 95/172 (55%), Positives = 119/172 (69%)

Query:   254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
             MQ+VIN+VKG AL VAEYLTPVLKESKF+ETGV+TPEEFVAAGDHLVHHCPTWQWA+G+E
Sbjct:     1 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE 60

Query:   314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTG-- 371
              K K+YLP  KQFL+TKNVPC +RCKQ++Y +E + IIE +  + GWVDT+H    TG  
Sbjct:    61 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT 120

Query:   372 ---KDIAIEDKISEISLDASTGWVDTHHYDETTGKDIAIEDKISEISLDATT 420
                K+I +E K S    D S    +    +E    D+   ++   +  D  T
Sbjct:   121 EAVKEITLESKDSIKLQDCSVLCDEEEEEEEGEAADMEEYEESGLLETDEAT 172

GO:0000045 "autophagic vacuole assembly" evidence=ISO;ISS

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006464 "cellular protein modification process" evidence=ISO

GO:0006914 "autophagy" evidence=IEP

GO:0015031 "protein transport" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISO

GO:0019776 "Atg8 ligase activity" evidence=ISO;ISS

GO:0019777 "Atg12 ligase activity" evidence=ISO;ISS

GO:0019787 "small conjugating protein ligase activity" evidence=ISO

GO:0019899 "enzyme binding" evidence=IEA;ISO

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISO;ISS

UNIPROTKB|E1C502 ATG3 "Autophagy-related protein 3" [Gallus gallus (taxid:9031)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 89/134 (66%), Positives = 109/134 (81%)

Query:   254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
             MQ+VIN+VKG AL VAEYLTPVLKESKF+ETGV+TPEEFVAAGDHLVHHCPTWQWASG+E
Sbjct:     1 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWASGEE 60

Query:   314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
              K K+YLP +KQFL+TKNVPC +RCKQ++Y +E++ IIE +  + GWVDT H     G  
Sbjct:    61 LKVKAYLPTDKQFLVTKNVPCYKRCKQMEYSDEQEAIIEEDDGDGGWVDTFHNAGIVGAT 120

Query:   374 IAIEDKISEISLDA 387
              A++    EI+LD+
Sbjct:   121 EAVK----EITLDS 130

GO:0015031 "protein transport" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019776 "Atg8 ligase activity" evidence=IEA

GO:0019777 "Atg12 ligase activity" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IEA

UNIPROTKB|Q5I0S6 atg3 "Ubiquitin-like-conjugating enzyme ATG3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 93/156 (59%), Positives = 120/156 (76%)

Query:   254 MQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDE 313
             MQSVIN+VKG AL VAEYLTPVLKESKF+ETGV+TPEEF+AAGDHLVHHCPTWQW++G+E
Sbjct:     1 MQSVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFLAAGDHLVHHCPTWQWSAGEE 60

Query:   314 SKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
             SK K YLP +KQFL+TKNVPC +RCKQ++Y +E++ IIE +  + GWVDT H+   TG  
Sbjct:    61 SKIKPYLPNDKQFLMTKNVPCYKRCKQMEYSDEQEAIIEEDDGDGGWVDTFHHS-LTG-- 117

Query:   374 IAIEDKISEISLDASTGWVDTHHYDETTGKDIAIED 409
               + + + EI+L+       T    +TT  +IA++D
Sbjct:   118 --VTEAVKEITLE-------TQDCGKTTS-NIAVDD 143

GO:0000045 "autophagic vacuole assembly" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019777 "Atg12 ligase activity" evidence=ISS

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISS

UNIPROTKB|F1PJ26 ATG3 "Autophagy-related protein 3" [Canis lupus familiaris (taxid:9615)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 93/168 (55%), Positives = 115/168 (68%)

Query:   258 INSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAK 317
             IN+VKG AL VAEYLTPVLKESKF+ETGV+TPEEFVAAGDHLVHHCPTWQWA+G+E K K
Sbjct:     3 INTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVK 62

Query:   318 SYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTG-----K 372
             +YLP  KQFL+TKNVPC +RCKQ++Y +E + IIE +  + GWVDT+H    TG     K
Sbjct:    63 AYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNAGVTGITEAVK 122

Query:   373 DIAIEDKISEISLDASTGWVDTHHYDETTGKDIAIEDKISEISLDATT 420
             +I +E K S    D S    +    DE    D+   ++   +  D  T
Sbjct:   123 EITLESKDSIKLQDCSAVCEEEEEEDEGEAADMEEYEESGLLETDEAT 170

GO:0005737 "cytoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5I0S6	ATG3_XENTR	6, ., 3, ., 2, ., -	0.6466	0.3047	0.4102	yes	N/A
Q0VCL3	ATG3_BOVIN	6, ., 3, ., 2, ., -	0.6492	0.3095	0.4140	yes	N/A
Q9NT62	ATG3_HUMAN	6, ., 3, ., 2, ., -	0.6616	0.3071	0.4108	yes	N/A
Q6PFS7	ATG3_DANRE	6, ., 3, ., 2, ., -	0.6766	0.3071	0.4069	yes	N/A
Q9CPX6	ATG3_MOUSE	6, ., 3, ., 2, ., -	0.6567	0.3095	0.4140	yes	N/A
Q6AZ50	ATG3_RAT	6, ., 3, ., 2, ., -	0.6567	0.3095	0.4140	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	420
pfam03986	146	pfam03986, Autophagy_N, Autophagocytosis associate	2e-66
pfam03987	62	pfam03987, Autophagy_act_C, Autophagocytosis assoc	3e-15
pfam03987	62	pfam03987, Autophagy_act_C, Autophagocytosis assoc	2e-13
pfam10381	25	pfam10381, Autophagy_Cterm, Autophagocytosis assoc	5e-12
pfam03987	62	pfam03987, Autophagy_act_C, Autophagocytosis assoc	4e-07

>gnl|CDD|217830 pfam03986, Autophagy_N, Autophagocytosis associated protein (Atg3), N-terminal domain

 Score =  207 bits (530), Expect = 2e-66
 Identities = 80/147 (54%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 260 SVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSY 319
           S+      V EYLTPVLK SKFRETGV+TPEEFVAAGD+LVH  PTW WA+GD SK + Y
Sbjct: 1   SLHSALSSVREYLTPVLKTSKFRETGVITPEEFVAAGDYLVHKFPTWSWAAGDPSKIRPY 60

Query: 320 LPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKDIAIEDK 379
           LPP+KQFL+T+NVPC RR KQ++Y +  ++I+E+E +++GWV TH   +    DIA E+ 
Sbjct: 61  LPPDKQFLVTRNVPCYRRAKQMEYGDGAEEIVEDEDEDDGWVTTHGNRDKQKDDIADEED 120

Query: 380 ISEISLDASTGWVDTHHYDETTGKDIA 406
           I EI  D     VD+   DE    DI 
Sbjct: 121 IPEIGDDDDDV-VDSSDADEDDDDDIP 146

Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme. It catalyzes the conjugation of Atg8 and phosphatidylethanolamine. Length = 146

>gnl|CDD|202841 pfam03987, Autophagy_act_C, Autophagocytosis associated protein, active-site domain

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 9  KSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCR 52
          +   PL+ ++M+ED+  DY  KTVT+E HP L G P  SIHPC+
Sbjct: 20 EDGKPLSPEEMFEDIVPDYRDKTVTLEEHPFL-GIPWYSIHPCK 62

Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex. Length = 62

>gnl|CDD|202841 pfam03987, Autophagy_act_C, Autophagocytosis associated protein, active-site domain

 Score = 64.5 bits (158), Expect = 2e-13
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 99  FTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCR 137
            + ++M+ED+  DY  KTVT+E HP L G P  SIHPC+
Sbjct: 25  LSPEEMFEDIVPDYRDKTVTLEEHPFL-GIPWYSIHPCK 62

Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex. Length = 62

>gnl|CDD|150967 pfam10381, Autophagy_Cterm, Autophagocytosis associated protein C-terminal

 Score = 59.5 bits (145), Expect = 5e-12
 Identities = 18/25 (72%), Positives = 20/25 (80%)

Query: 73 VHMYLIIFLKFVQSVIPTIEYDFTQ 97
          V  YL IFLKF+ SVIPTIEYD+T 
Sbjct: 1  VDQYLFIFLKFIASVIPTIEYDYTT 25

Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The small C-terminal domain is likely to be a distinct binding region for the stability of the autophagosome complex. It carries a highly characteristic conserved FLKF sequence motif. Length = 25

>gnl|CDD|202841 pfam03987, Autophagy_act_C, Autophagocytosis associated protein, active-site domain

 Score = 46.4 bits (111), Expect = 4e-07
 Identities = 14/20 (70%), Positives = 17/20 (85%)

Query: 217 HITYDKYYQTPRLWLYGYNE 236
           +ITYDK YQ PRL+L GY+E
Sbjct: 1   YITYDKSYQVPRLYLRGYDE 20

Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex. Length = 62

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	420
PF03986	145	Autophagy_N: Autophagocytosis associated protein (	100.0
KOG2981|consensus	295		100.0
KOG2981|consensus	295		100.0
PF10381	25	Autophagy_Cterm: Autophagocytosis associated prote	99.59
PF03987	62	Autophagy_act_C: Autophagocytosis associated prote	98.99
PF03987	62	Autophagy_act_C: Autophagocytosis associated prote	97.61
KOG4741|consensus	173		94.16

>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes

Probab=100.00  E-value=6.2e-53  Score=374.82  Aligned_cols=108  Identities=63%  Similarity=1.146  Sum_probs=43.8

Q ss_pred             HHhhhhhhhhhcccccccCCceeeeccChHHHHHccccccccCCceeecCCCCCcccCCCCCCCceEEeCCCCCcccccc
Q psy4303         261 VKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSYLPPNKQFLITKNVPCPRRCKQ  340 (420)
Q Consensus       261 v~s~~~~vreylTPvl~eS~F~etG~LTPEEFV~AGD~LV~kfPTWqW~~gd~sk~r~yLP~dKQFLVTRnVPC~rR~k~  340 (420)
                      |+|++++||||||||+|+|+|++||+|||||||+||||||||||||||++|+++++|+|||+||||||||||||++||++
T Consensus         2 l~s~~~~~~e~ltPv~~~S~F~etG~iTPeEFV~AGD~LV~k~PTW~W~~g~~~k~k~yLP~dKQfLvtRnVPC~~R~~~   81 (145)
T PF03986_consen    2 LRSTFSSVREYLTPVLHESKFKETGVITPEEFVAAGDYLVHKFPTWQWSAGDPSKRKDYLPKDKQFLVTRNVPCYRRAKD   81 (145)
T ss_dssp             --------------------HHHHS---HHHHHHHHHHHHHH-TT-EE---TTB---TTS-TT-S-EEEEEEEE-S-TTT
T ss_pred             hHHHHHHHHHHhcCCCCcccccccceeCHHHHHHhhhHHHhhCCcceeccCCccccCCCCCCCCeEEEecCcccHHhhhh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhhhhccccCCCCceeecccccC
Q psy4303         341 IDYCEEKQKIIENEQDEEGWVDTHHYDE  368 (420)
Q Consensus       341 ~~~~~~~E~iv~~~d~ddGWV~T~~~~~  368 (420)
                      +.+....|.+++++++++|||.||++..
T Consensus        82 ~~~~~~~e~~~~~~~~ddgWv~t~~~~~  109 (145)
T PF03986_consen   82 MEYSEEDEEIVEDDDDDDGWVDTHHNQT  109 (145)
T ss_dssp             ----------------------------
T ss_pred             ccccccccceeccCCCCCCeEccCCccc
Confidence            9988778888888888999999998643

Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.

>KOG2981|consensus

Probab=100.00  E-value=3.2e-51  Score=391.40  Aligned_cols=145  Identities=54%  Similarity=0.953  Sum_probs=126.1

Q ss_pred             HHHHHHHHhhhhhhhhhcccccccCCceeeeccChHHHHHccccccccCCceeecCCCCCcccCCCCCCCceEEeCCCCC
Q psy4303         255 QSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSYLPPNKQFLITKNVPC  334 (420)
Q Consensus       255 ~~~~n~v~s~~~~vreylTPvl~eS~F~etG~LTPEEFV~AGD~LV~kfPTWqW~~gd~sk~r~yLP~dKQFLVTRnVPC  334 (420)
                      ||+.|.|+|++++||||||||+++|+|++||+|||||||+|||+||||||||||++|+++|+|+|||+||||||||||||
T Consensus         1 q~~~n~l~sa~l~~~E~lTpv~k~S~F~etGvitpeEFV~AGD~Lvh~cPTW~W~~gd~~k~r~fLPkdKQfLItRnVpC   80 (295)
T KOG2981|consen    1 QNLANTLKSAALNWREYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWSWAEGDESKIRPFLPKDKQFLITRNVPC   80 (295)
T ss_pred             CcHHHHHHHHHHhHHHhcccccchhhhhhcCccCHHHHHhccchhhhcCCccccccCCcccccccCCCCceEEEeccChH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccchhhhhhccccCCCCceeecccccC------------------CC-CCCcccchhcccccccCCCCccccc
Q psy4303         335 PRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDE------------------TT-GKDIAIEDKISEISLDASTGWVDTH  395 (420)
Q Consensus       335 ~rR~k~~~~~~~~E~iv~~~d~ddGWV~T~~~~~------------------~~-~~~~~i~e~~~em~le~~~~~~~~~  395 (420)
                      +|||+||++.++.|.+++++++ +|||+||+...                  .. ....+.+|.+..++++.+++..+.-
T Consensus        81 ~kR~~q~~~~ee~e~iv~~Edg-~gwvdT~~~ed~le~~~~e~ih~~~t~~~~~e~~~edddE~~d~~e~~e~d~~edp~  159 (295)
T KOG2981|consen   81 YKRCKQMEYVEELEVIVDEEDG-GGWVDTHNEEDTLEYIGKETIHSQDTPAAAPESSDEDDDELIDMEELEESDEEEDPA  159 (295)
T ss_pred             HHHHhhhhcccccceEEeccCC-CccccccchhhcccccchhhcccCCCCcCCccccccccccccccccccccccccCHH
Confidence            9999999999999999875554 99999995421                  00 2334466777777787777666667


Q ss_pred             ccccc
Q psy4303         396 HYDET  400 (420)
Q Consensus       396 ~~~~~  400 (420)
                      +|+.+
T Consensus       160 ~~~s~  164 (295)
T KOG2981|consen  160 TFVSK  164 (295)
T ss_pred             HHhhh
Confidence            77774

>KOG2981|consensus

Probab=100.00  E-value=2.3e-45  Score=351.31  Aligned_cols=97  Identities=71%  Similarity=1.140  Sum_probs=94.2

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhccccccCCceeeccCCCCCCCCceeeecCCchHHHHHHHHHHHhcCCcccccchHHHH
Q psy4303           1 MGANNQGVKSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETVLEGGGELGVHMYLIIF   80 (420)
Q Consensus         1 ~g~~~~G~~~~~PLt~~qmfEDIs~Dya~KTVTiE~hP~l~~~~~aSIHPCKHA~VMK~li~~~~~~g~~l~VdqYLvIF   80 (420)
                      +|||.+|    +|||++|||||||+|||+||||||+|||+++..||||||||||+||||||++++++|++|+|||||+||
T Consensus       199 ~Gyde~r----~pLt~E~myEDvS~Dha~KTvTiE~hPh~~~~~m~SVHPCkHa~vMkklI~~~~e~g~~l~Vd~YL~lF  274 (295)
T KOG2981|consen  199 VGYDENR----QPLTVEQMYEDVSQDHAKKTVTIEKHPHLPGPNMASVHPCKHAEVMKKLIDQVRERGDELGVDQYLILF  274 (295)
T ss_pred             EEecCCC----CcCCHHHHHHHhhhhhccCeEEeccCCCCCCCCccccccchhHHHHHHHHHHHHhcCCCcceehhHHHH
Confidence            5999888    999999999999999999999999999999878999999999999999999999999999999999999


Q ss_pred             HHHhhhcccceeecccccccc
Q psy4303          81 LKFVQSVIPTIEYDFTQNFTV  101 (420)
Q Consensus        81 LKFI~SViPTIEyDyT~~~~~  101 (420)
                      ||||||||||||||||++|.|
T Consensus       275 LKFv~sViPtiEyDYT~~~~l  295 (295)
T KOG2981|consen  275 LKFVQSVIPTIEYDYTMEFWL  295 (295)
T ss_pred             HHHHHhhccceEeeeeeeccC
Confidence            999999999999999999875

>PF10381 Autophagy_Cterm: Autophagocytosis associated protein C-terminal; InterPro: IPR019461 Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole

Probab=99.59  E-value=4.7e-16  Score=103.47  Aligned_cols=25  Identities=72%  Similarity=1.233  Sum_probs=20.6

Q ss_pred             ccchHHHHHHHhhhcccceeecccc
Q psy4303          73 VHMYLIIFLKFVQSVIPTIEYDFTQ   97 (420)
Q Consensus        73 VdqYLvIFLKFI~SViPTIEyDyT~   97 (420)
                      |||||+||||||+|||||||||||+
T Consensus         1 vd~yl~iFLKFi~sViPtIeyD~t~   25 (25)
T PF10381_consen    1 VDQYLVIFLKFISSVIPTIEYDYTM   25 (25)
T ss_dssp             GGGHHHHHHHHHHHHSTTB--TT--
T ss_pred             CceeehhHHHHHhhcCCceeeeccC
Confidence            7999999999999999999999996

The small C-terminal domain is likely to be a distinct binding region for the stability of the autophagosome complex []. It carries a highly characteristic conserved FLKF sequence motif. ; PDB: 2DYT_A.

>PF03987 Autophagy_act_C: Autophagocytosis associated protein, active-site domain ; InterPro: IPR007135 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes

Probab=98.99  E-value=7.3e-11  Score=90.98  Aligned_cols=42  Identities=48%  Similarity=0.831  Sum_probs=31.3

Q ss_pred             CCCCCChhhhhhhccccccCCceeeccCCCCCCCCceeeecCC
Q psy4303          10 SRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCR   52 (420)
Q Consensus        10 ~~~PLt~~qmfEDIs~Dya~KTVTiE~hP~l~~~~~aSIHPCK   52 (420)
                      +|.||+.++|++|++.+++++|||++.||+++ .++.+|||||
T Consensus        21 ~g~~l~~~~~~~~~~~~~~~~~it~~~HP~l~-~p~~~iHPC~   62 (62)
T PF03987_consen   21 DGSPLSLEEVYEDLSPDSADSTITQEEHPILG-IPWYSIHPCD   62 (62)
T ss_dssp             T--B--HHHHHTTS-TTTHHHHEEEEE-TTBS-S-EEEE-S-S
T ss_pred             CCCCCCHHHHHHhhccccccceeecccCCCCC-CceEEEcCCC
Confidence            34999999999999999999999999999996 6899999997

Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex [].; PDB: 2DYT_A.

>PF03987 Autophagy_act_C: Autophagocytosis associated protein, active-site domain ; InterPro: IPR007135 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes

Probab=97.61  E-value=3e-05  Score=59.91  Aligned_cols=22  Identities=50%  Similarity=0.869  Sum_probs=20.0

Q ss_pred             EEeeeccccCCeeeEeeccCCC
Q psy4303         217 HITYDKYYQTPRLWLYGYNERF  238 (420)
Q Consensus       217 ~ityd~~y~tpr~~l~gy~e~~  238 (420)
                      +|+||++||+|+||+.||++++
T Consensus         1 ~I~Ys~~YqvP~L~f~~~~~~g   22 (62)
T PF03987_consen    1 HITYSPSYQVPVLYFRGYDEDG   22 (62)
T ss_dssp             EEEEETTTTEEEEEEEEEETT-
T ss_pred             CEEecCccCCCEEEEEEECCCC
Confidence            6999999999999999999865

Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex [].; PDB: 2DYT_A.

>KOG4741|consensus

Probab=94.16  E-value=0.04  Score=51.71  Aligned_cols=53  Identities=32%  Similarity=0.540  Sum_probs=40.7

Q ss_pred             CCCCCChhhhhhhccccccC---CceeeccCCCCCCCCceeeecCCchHHHHHHHHH
Q psy4303          10 SRAPLTVDQMYEDVSQDYAK---KTVTMESHPHLPGPPMASIHPCRHAEVMKKIIET   63 (420)
Q Consensus        10 ~~~PLt~~qmfEDIs~Dya~---KTVTiE~hP~l~~~~~aSIHPCKHA~VMK~li~~   63 (420)
                      +|.||+..+|-|=--.+--.   -++|--.||+|. .+---+||||-+++||.+-++
T Consensus        88 ngrpl~~r~v~Ei~~t~l~e~~~~~Itq~eHP~Lg-~pyy~LHPC~Tse~mke~~k~  143 (173)
T KOG4741|consen   88 NGRPLRVRQVAEILGTKLEENDAIVITQSEHPTLG-IPYYKLHPCDTSELMKEIPKR  143 (173)
T ss_pred             CCCchhhhhhHHhhcCccccCccceeeeccCCccc-ceeeeecCCcHHHHHhhcCCc
Confidence            46999999777643332211   478888999995 788999999999999988654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	420
3vx8_B	292	Crystal Structure Of Arabidopsis Thaliana Atg7ntd-A		1e-22
3vx8_B	292	Crystal Structure Of Arabidopsis Thaliana Atg7ntd-A		1e-22
2dyt_A	312	The Crystal Structure Of Saccharomyces Cerevisiae A		5e-17
4gsl_C	312	Crystal Structure Of An Atg7-Atg3 Crosslinked Compl		3e-16

>pdb|3VX8|B Chain B, Crystal Structure Of Arabidopsis Thaliana Atg7ntd-Atg3 Complex Length = 292

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 9   KSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETXXXXX 68
           +SR  L  + + EDVSQD+A+KTVT+E HPHLPG   AS+HPCRH  VMKKII+      
Sbjct: 196 ESRMLLQPELVMEDVSQDHARKTVTIEDHPHLPGK-HASVHPCRHGAVMKKIIDVLMSRG 254
Query: 69  XXXXXHMYLIIFLKFVQSVIPTIEYDFTQNFTV 101
                  YL +FLKF+ SVIPTIEYD+T +F +
Sbjct: 255 VEPEVDKYLFLFLKFMASVIPTIEYDYTMDFDL 287

>pdb|3VX8|B Chain B, Crystal Structure Of Arabidopsis Thaliana Atg7ntd-Atg3 Complex Length = 292

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Query: 281 FRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSYLPPNKQFLITKNVPCPRRCKQ 340
           F+E GV++  EFV AGD+LV  CPTW W SGD SK K YLP +KQFLIT+NVPC RR   
Sbjct: 6   FKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDASKRKPYLPSDKQFLITRNVPCLRRAAS 65
Query: 341 I--DYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
           +  DY     +++ +++D +GW+ TH   +  GK+
Sbjct: 66  VAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKGKE 100

>pdb|2DYT|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg3 Length = 312

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
Query: 261 VKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSY- 319
           ++ T     EYLTP+  +S F  TG +TPEEFV AGD+L H  PTW+W   +ES   SY 
Sbjct: 4   IRSTLSSWREYLTPITHKSTFLTTGQITPEEFVQAGDYLCHMFPTWKW--NEESSDISYR 61
Query: 320 --LPPNKQFLITKNVPCPRRCKQ 340
             LP NKQFLI + VPC +R +Q
Sbjct: 62  DFLPKNKQFLIIRKVPCDKRAEQ 84

>pdb|4GSL|C Chain C, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex Length = 312

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 261 VKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSY- 319
           ++ T     EYLTP+  +S F  TG +TPEEFV AGD+L H  PTW+W   +ES   SY 
Sbjct: 4   IRSTLSSWREYLTPITHKSTFLTTGQITPEEFVQAGDYLAHMFPTWKW--NEESSDISYR 61
Query: 320 --LPPNKQFLITKNVPCPRRCKQ 340
             LP NKQFLI + VP  +R +Q
Sbjct: 62  DFLPKNKQFLIIRKVPADKRAEQ 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	420
2dyt_A	312	Autophagy-related protein 3; E2 fold, ligase; 2.50	4e-46
2dyt_A	312	Autophagy-related protein 3; E2 fold, ligase; 2.50	2e-33
2dyt_A	312	Autophagy-related protein 3; E2 fold, ligase; 2.50	1e-12
2dyt_A	312	Autophagy-related protein 3; E2 fold, ligase; 2.50	6e-12

>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae} Length = 312

 Score =  160 bits (405), Expect = 4e-46
 Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 11/169 (6%)

Query: 259 NSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWAS-GDESKAK 317
           + ++ T     EYLTP+  +S F  TG +TPEEFV AGD+L H  PTW+W     +   +
Sbjct: 2   SMIRSTLSSWREYLTPITHKSTFLTTGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYR 61

Query: 318 SYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYD---------- 367
            +LP NKQFLI + VPC +R +Q    E    I++   ++    D   Y           
Sbjct: 62  DFLPKNKQFLIIRKVPCDKRAEQCVEVEGPDVIMKGFAEDGDEDDVLEYIGSETEHVQST 121

Query: 368 ETTGKDIAIEDKISEISLDASTGWVDTHHYDETTGKDIAIEDKISEISL 416
              G   +  D I E+  D      D +   E       +   +++   
Sbjct: 122 PAGGTKDSSIDDIDELIQDMEIKEEDENDDTEEFNAKGGLAKDMAQERY 170

>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae} Length = 312

 Score =  126 bits (317), Expect = 2e-33
 Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 28/116 (24%)

Query: 9   KSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGP-PMASIHPCRHAEVMKKIIETVL-- 65
            + +PL+ +QM+ED+S DY  KT T+E  P         SIHPC+HA VMK +++ V   
Sbjct: 193 SNGSPLSPEQMFEDISADYRTKTATIEKLPFYKNSVLSVSIHPCKHANVMKILLDKVRVV 252

Query: 66  -------------------------EGGGELGVHMYLIIFLKFVQSVIPTIEYDFT 96
                                    +    L V  YLI+FLKF+ SV P+I++D+T
Sbjct: 253 RQRRRKELQEEQELDGVGDWEDLQDDIDDSLRVDQYLIVFLKFITSVTPSIQHDYT 308

>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae} Length = 312

 Score = 67.6 bits (164), Expect = 1e-12
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 152 KPNSTEEEDDDDEEALDMEDFEESGFLDEQDPSIANIPPEKQSPSSPAGDSQECGDIVRT 211
              ST      D    D+++  +   + E+D +                      D+ + 
Sbjct: 117 HVQSTPAGGTKDSSIDDIDELIQDMEIKEEDEN--------DDTEEFNAKGGLAKDMAQE 168

Query: 212 RTYDLHITYDKYYQTPRLWLYGYNER 237
           R YDL+I Y   Y+ P++++ G+N  
Sbjct: 169 RYYDLYIAYSTSYRVPKMYIVGFNSN 194

>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae} Length = 312

 Score = 65.2 bits (158), Expect = 6e-12
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 100 TVDQMYEDVSQDYAKKTVTMESHPHLPGP-PMASIHPCR---AIKSKASNQTQSCNKPNS 155
           + +QM+ED+S DY  KT T+E  P         SIHPC+    +K           +   
Sbjct: 199 SPEQMFEDISADYRTKTATIEKLPFYKNSVLSVSIHPCKHANVMKILLDKVRVVRQRRRK 258

Query: 156 TEEEDDDDEEALDMEDFEESG 176
             +E+ + +   D ED ++  
Sbjct: 259 ELQEEQELDGVGDWEDLQDDI 279

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	420
2dyt_A	312	Autophagy-related protein 3; E2 fold, ligase; 2.50	100.0
3vx8_B	292	Autophagy-related protein 3; E1-E2 complex, ligase	100.0
3vx8_B	292	Autophagy-related protein 3; E1-E2 complex, ligase	100.0
2dyt_A	312	Autophagy-related protein 3; E2 fold, ligase; 2.50	100.0
4ebr_A	169	Ubiquitin-like-conjugating enzyme ATG10; autophagy	98.47
4ebr_A	169	Ubiquitin-like-conjugating enzyme ATG10; autophagy	97.6
3vx7_B	152	E2; ubiquitin conjugation; 3.20A {Kluyveromyces ma	90.51
3vx7_B	152	E2; ubiquitin conjugation; 3.20A {Kluyveromyces ma	87.92

>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-46  Score=366.61  Aligned_cols=105  Identities=40%  Similarity=0.726  Sum_probs=60.2

Q ss_pred             HHHHhhhhhhhhhcccccccCCceeeeccChHHHHHccccccccCCceeecCC-CCCcccCCCCCCCceEEeCCCCCccc
Q psy4303         259 NSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASG-DESKAKSYLPPNKQFLITKNVPCPRR  337 (420)
Q Consensus       259 n~v~s~~~~vreylTPvl~eS~F~etG~LTPEEFV~AGD~LV~kfPTWqW~~g-d~sk~r~yLP~dKQFLVTRnVPC~rR  337 (420)
                      |.++|++++||||||||+++|+|++||+|||||||+||||||||||||||++| +++|+|+|||+||||||||||||+||
T Consensus         2 n~~~s~~~~~~e~ltpv~~~S~F~etG~lTPeEFV~AGD~Lv~k~PTW~W~~~~~~~k~~~yLP~dKQfLiTRnVPC~~R   81 (312)
T 2dyt_A            2 SMIRSTLSSWREYLTPITHKSTFLTTGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYRDFLPKNKQFLIIRKVPCDKR   81 (312)
T ss_dssp             ---------------------CHHHHSCCCHHHHHHHHHHHHHHCTTCEECCCCTTBCCCTTSCTTCSCEEEEEEEECSC
T ss_pred             hhHHHHHHHHHHHhcCCCCccccccCcccCHHHHHhcchhhhhhCCccccccCCCcccccCCCCCCceEEEecCcccHHH
Confidence            56899999999999999999999999999999999999999999999999866 78899999999999999999999999


Q ss_pred             ccccccchhhhhhcc-------ccCCCCceeecc
Q psy4303         338 CKQIDYCEEKQKIIE-------NEQDEEGWVDTH  364 (420)
Q Consensus       338 ~k~~~~~~~~E~iv~-------~~d~ddGWV~T~  364 (420)
                      |+++. ....+.+++       ++++++|||.||
T Consensus        82 ~~~~~-~~~~~~~~~~~~~~~~~~~~~dgWv~t~  114 (312)
T 2dyt_A           82 AEQCV-EVEGPDVIMKGFAEDGDEDDVLEYIGSE  114 (312)
T ss_dssp             TTTC------------------------------
T ss_pred             hhhcc-ccchhhhhhccccccccccCCCceeecc
Confidence            99984 333344443       346688999998

>3vx8_B Autophagy-related protein 3; E1-E2 complex, ligase; 3.11A {Arabidopsis thaliana}

Probab=100.00  E-value=1.5e-41  Score=328.51  Aligned_cols=87  Identities=52%  Similarity=1.041  Sum_probs=60.1

Q ss_pred             CceeeeccChHHHHHccccccccCCceeecCCCCCcccCCCCCCCceEEeCCCCCccccccc--ccchhhhhhccccCCC
Q psy4303         280 KFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSYLPPNKQFLITKNVPCPRRCKQI--DYCEEKQKIIENEQDE  357 (420)
Q Consensus       280 ~F~etG~LTPEEFV~AGD~LV~kfPTWqW~~gd~sk~r~yLP~dKQFLVTRnVPC~rR~k~~--~~~~~~E~iv~~~d~d  357 (420)
                      +|++||+|||||||+||||||||||||||++|+++|+|+|||+||||||||||||+|||+++  .+.+..|.+++++++|
T Consensus         5 ~F~etG~lTPEEFV~AGD~LV~kfPTW~W~~g~~~k~~~yLP~dKQfLvTRnVPC~~R~~~~~~~~~~~~e~~~~~~d~d   84 (292)
T 3vx8_B            5 AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDASKRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDN   84 (292)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHCTTCEEECCCGGGCCTTSCTTCSEEEEEEEEECSCTTC-------------------
T ss_pred             ceeeCceeCHHHHHhhhhhhhhcCCCccCCCCCccccccCCCCCCeEEEECCcccHHHhhhhhccccccchhhccccCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999  5666666777777788


Q ss_pred             Cceeecccc
Q psy4303         358 EGWVDTHHY  366 (420)
Q Consensus       358 dGWV~T~~~  366 (420)
                      +|||.||++
T Consensus        85 dgWv~t~~~   93 (292)
T 3vx8_B           85 DGWLATHGK   93 (292)
T ss_dssp             ---------
T ss_pred             CceeecCCc
Confidence            999999874

>3vx8_B Autophagy-related protein 3; E1-E2 complex, ligase; 3.11A {Arabidopsis thaliana}

Probab=100.00  E-value=9.4e-40  Score=315.98  Aligned_cols=97  Identities=53%  Similarity=0.838  Sum_probs=84.3

Q ss_pred             CCCCCCCCCCCCCChhhhhhhccccccCCceeeccCCCCCCCCceeeecCCchHHHHHHHHHHHhcCCcccccchHHHHH
Q psy4303           2 GANNQGVKSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETVLEGGGELGVHMYLIIFL   81 (420)
Q Consensus         2 g~~~~G~~~~~PLt~~qmfEDIs~Dya~KTVTiE~hP~l~~~~~aSIHPCKHA~VMK~li~~~~~~g~~l~VdqYLvIFL   81 (420)
                      ||+.+|    +||+++||||||++||++||||+|.|||| +.+++||||||||+|||+||+++.++|++++|||||+|||
T Consensus       193 gy~~~g----~PL~~ee~~edi~~d~~~ktVT~e~HP~l-~~p~~siHPC~ha~vMk~l~~~~~~~~~~~~v~~YL~ifL  267 (292)
T 3vx8_B          193 GYDESR----MLLQPELVMEDVSQDHARKTVTIEDHPHL-PGKHASVHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFL  267 (292)
T ss_dssp             EECTTS----CBCCGGGGGGTSCCC----CEEEEECSSS-SSEEEEECGGGHHHHHHHHHHHHHHHTCCCCGGGHHHHHH
T ss_pred             EECCCC----CcCCHHHHHHHhhhhhhcceEEeecCCcc-CCceeEEecCCcHHHHHHHHHHHHhcCCCcChhhHHHHHH
Confidence            677777    99999999999999999999999999999 5899999999999999999999999999999999999999


Q ss_pred             HHhhhcccceeecccccccccc
Q psy4303          82 KFVQSVIPTIEYDFTQNFTVDQ  103 (420)
Q Consensus        82 KFI~SViPTIEyDyT~~~~~~~  103 (420)
                      |||||||||||||||++|++.+
T Consensus       268 kFi~sViPTIEyDyT~~~~~~~  289 (292)
T 3vx8_B          268 KFMASVIPTIEYDYTMDFDLGS  289 (292)
T ss_dssp             HHHTTTSTTCCCCCCC------
T ss_pred             HHHhhccCCEEEEeeeeEeccC
Confidence            9999999999999999999864

>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-36  Score=296.71  Aligned_cols=94  Identities=46%  Similarity=0.750  Sum_probs=82.9

Q ss_pred             CCCCCCCCCCCCCChhhhhhhccccccCCceeeccCCC--CCCCCceeeecCCchHHHHHHHHHHH--------------
Q psy4303           2 GANNQGVKSRAPLTVDQMYEDVSQDYAKKTVTMESHPH--LPGPPMASIHPCRHAEVMKKIIETVL--------------   65 (420)
Q Consensus         2 g~~~~G~~~~~PLt~~qmfEDIs~Dya~KTVTiE~hP~--l~~~~~aSIHPCKHA~VMK~li~~~~--------------   65 (420)
                      ||+.+|    +||++++|||||+++|+.||||+|.|||  + +.+++||||||||+|||+|++++.              
T Consensus       190 gy~~dg----~PL~~~e~~edi~~d~~~ktVT~e~HP~~~l-g~p~~sIHPCkta~vMk~l~~~~~~~~~~~~~~~~~~~  264 (312)
T 2dyt_A          190 GFNSNG----SPLSPEQMFEDISADYRTKTATIEKLPFYKN-SVLSVSIHPCKHANVMKILLDKVRVVRQRRRKELQEEQ  264 (312)
T ss_dssp             EEETTC----CBCCHHHHHTTSCTTTHHHHEEEEECTTBSS-CCEEEEECSCSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eECCCC----CCCCHHHHHHHHHHhhccCceecccCCCccC-CCceEEEecCcHHHHHHHHHHHHhhhhhhccccccccc
Confidence            667666    9999999999999999999999999999  6 589999999999999999999997              


Q ss_pred             -------------hcCCcccccchHHHHHHHhhhcccceeeccccccc
Q psy4303          66 -------------EGGGELGVHMYLIIFLKFVQSVIPTIEYDFTQNFT  100 (420)
Q Consensus        66 -------------~~g~~l~VdqYLvIFLKFI~SViPTIEyDyT~~~~  100 (420)
                                   ++|+++||||||+|||||||||||||||||||+|.
T Consensus       265 ~~~~~~~w~~~~~~~~~~irvd~YLviFLKFIasViPtIEyD~T~~~~  312 (312)
T 2dyt_A          265 ELDGVGDWEDLQDDIDDSLRVDQYLIVFLKFITSVTPSIQHDYTMEGW  312 (312)
T ss_dssp             HHTTCTTC--------CCCCGGGHHHHHHHHHHHHSTTBCCTTC----
T ss_pred             cccccccchhcccccCCCcCcchhHHHHHHHhcccCCCeEeeecccCC
Confidence                         46778999999999999999999999999999873

>4ebr_A Ubiquitin-like-conjugating enzyme ATG10; autophagy, ligase, protein binding, A ATG5, thiolation; 2.70A {Saccharomyces cerevisiae}

Probab=98.47  E-value=7.3e-09  Score=92.48  Aligned_cols=57  Identities=16%  Similarity=0.196  Sum_probs=46.6

Q ss_pred             hhhhhhccccccCCceeecc-CCCCCCCCceeeecCCchHHHHHHHHHHHhcCCcccccchHHHHHHH
Q psy4303          17 DQMYEDVSQDYAKKTVTMES-HPHLPGPPMASIHPCRHAEVMKKIIETVLEGGGELGVHMYLIIFLKF   83 (420)
Q Consensus        17 ~qmfEDIs~Dya~KTVTiE~-hP~l~~~~~aSIHPCKHA~VMK~li~~~~~~g~~l~VdqYLvIFLKF   83 (420)
                      .+++++++++++.+|||++. ||++ |.+..+||||+||++|+.         .......||+.+|-.
T Consensus       101 ~~~~~~~~~~~~~~t~~~~~~Hp~~-g~p~~~iHPC~T~~~m~~---------~~~~~~~YL~~WlSl  158 (169)
T 4ebr_A          101 PTDIESLLDVQGKFQLGLDTIINLE-GSVWYSFHPCDTSCIVGD---------QAEFMSTYLRRWVSI  158 (169)
T ss_dssp             HHHHHHHHTTTTCCCCSSEEEEEET-TEEEEECCSSCGGGSCCT---------TCTTGGGGHHHHHHH
T ss_pred             hHHHHHHhccccceEEEeccCCCCC-CCceEEEcCcCcHHHHhc---------cccchHhHHHHHHHH
Confidence            37889999999999999986 6776 579999999999999963         234567899988753

>4ebr_A Ubiquitin-like-conjugating enzyme ATG10; autophagy, ligase, protein binding, A ATG5, thiolation; 2.70A {Saccharomyces cerevisiae}

Probab=97.60  E-value=1.6e-05  Score=70.99  Aligned_cols=31  Identities=29%  Similarity=0.402  Sum_probs=27.3

Q ss_pred             eeeeeEEEEeeeccccCCeeeEeeccCCCCC
Q psy4303         210 RTRTYDLHITYDKYYQTPRLWLYGYNERFKG  240 (420)
Q Consensus       210 ~~rtyd~~ityd~~y~tpr~~l~gy~e~~~~  240 (420)
                      +.++||++|+|+++||+|+||+.||+++..+
T Consensus        61 ~~~~id~~I~Ys~sYqVPvL~f~~~~~~~~~   91 (169)
T 4ebr_A           61 LLNHIELYLTYSKVYNEPLLLLRIWEEKSID   91 (169)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEEEEEEEET
T ss_pred             cceEEEEEEEEecccCCcEEEEEEEcCCCCc
Confidence            3488999999999999999999999986543

>3vx7_B E2; ubiquitin conjugation; 3.20A {Kluyveromyces marxianus} PDB: 2lpu_A

Probab=90.51  E-value=0.083  Score=47.53  Aligned_cols=42  Identities=14%  Similarity=0.260  Sum_probs=34.2

Q ss_pred             CCceeeccCCCCCCCCceeeecCCchHHHHHHHHHHHhcCCcccccchHHHHHHH
Q psy4303          29 KKTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETVLEGGGELGVHMYLIIFLKF   83 (420)
Q Consensus        29 ~KTVTiE~hP~l~~~~~aSIHPCKHA~VMK~li~~~~~~g~~l~VdqYLvIFLKF   83 (420)
                      .-+|++..||+++ -+.-+||||+-+++|+...            ..||.-++-+
T Consensus       100 ~~sI~L~~hp~l~-~~wy~IHPCdT~eivg~~~------------~nYL~rW~Sv  141 (152)
T 3vx7_B          100 TFSVTLSTDMEMK-SVYYYINNCDTDANVGSDV------------EHYLTRWISL  141 (152)
T ss_dssp             TCCEEEEECTTSS-SEEEEECCTTHHHHHCSCS------------TTHHHHHHHH
T ss_pred             ceeEEeeeccccC-CceEEEcCccHHHHhccch------------hhHHHHHHHH
Confidence            5799999999986 6999999999999987322            6888877654

>3vx7_B E2; ubiquitin conjugation; 3.20A {Kluyveromyces marxianus} PDB: 2lpu_A

Probab=87.92  E-value=0.27  Score=44.24  Aligned_cols=26  Identities=27%  Similarity=0.497  Sum_probs=24.2

Q ss_pred             eeeEEEEeeeccccCCeeeEeeccCC
Q psy4303         212 RTYDLHITYDKYYQTPRLWLYGYNER  237 (420)
Q Consensus       212 rtyd~~ityd~~y~tpr~~l~gy~e~  237 (420)
                      -.||++|+|+++||.|.||+..|..+
T Consensus        49 ~~~e~~I~Ys~~YqvPvL~fR~~~~~   74 (152)
T 3vx7_B           49 TLLELHIYYDHVYHVPSIKFRLWSLD   74 (152)
T ss_dssp             EEEEEEEEECSSSSSEEEEEEEEEEE
T ss_pred             eEEEEEEEEeccccCceEEEEeecCC
Confidence            67999999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00