Psyllid ID: psy4593

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MRSYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHANSHVPMTLS
Secondary Structure (PSIPRED)
cccccccccEEEEccHHHHHcccccccccEEEEcccccccccccccccccHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHccccccEEEEEEccccccHHHHHEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEccHHHHHHHcccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHcccccEEEEccccHHHcHHHHHHHHHHHHHHccHEEEEEEEcccccccEEEEEEEEccccccccccccEEcc
Coil and Loop (DISEMBL)
mrsyrgypvlsarqdctdfmsgpvknmcglvvsgaagpgrvvcpaeslFQASYFELMSRalrpggivcsqagtlwysldcvgntlqhcasvfprvaygatcvptypsgqigFVLGSQLLKqhanshvpmtls
Flexible Loop (DISEMBL)
mrsyrgypvlsarqdcTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHanshvpmtls
Low Complexity Region (SEG)
MRSYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHANSHVPMTLS
Disordered region (IsUnstruct)
*******PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLL*************
Disordered Region (DISOPRED)
**S*RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHANSHVPMT**
Disordered Region (DISEMBL)
MRSYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQ***********
Disordered Region (DISPRO)
***YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHANSHVP*T**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHANSHVPMTLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q09741	298	Spermidine synthase OS=Sc	yes	N/A	0.681	0.302	0.430	6e-18
Q9Y8H7	291	Spermidine synthase OS=Ne	N/A	N/A	0.757	0.343	0.409	9e-18
P19623	302	Spermidine synthase OS=Ho	yes	N/A	0.742	0.324	0.383	1e-16
O48661	340	Spermidine synthase 2 OS=	yes	N/A	0.734	0.285	0.396	2e-16
Q9XY92	284	Spermidine synthase OS=Di	yes	N/A	0.727	0.338	0.38	4e-16
Q9ZUB3	334	Spermidine synthase 1 OS=	no	N/A	0.734	0.290	0.386	6e-16
Q64674	302	Spermidine synthase OS=Mu	yes	N/A	0.742	0.324	0.375	7e-16
Q9ZTR0	342	Spermidine synthase 2 OS=	N/A	N/A	0.734	0.283	0.366	3e-15
Q9ZTR1	334	Spermidine synthase 1 OS=	N/A	N/A	0.734	0.290	0.386	3e-15
Q96556	308	Spermidine synthase 1 OS=	N/A	N/A	0.553	0.237	0.459	8e-15

>sp|Q09741|SPEE_SCHPO Spermidine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC12C2.07c PE=3 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 3/93 (3%)

Query: 25  KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
           +N   ++++ ++ P     PAE+LFQ  YF+L+S ALR GG++ +QA  +W  L  + N 
Sbjct: 159 QNTFDVIITDSSDPD---GPAEALFQKPYFQLLSDALRGGGVITTQAECMWIHLGVISNV 215

Query: 85  LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
           L    +VFP V Y  T +PTYPSG IGFV+ S+
Sbjct: 216 LTAVKTVFPNVRYAYTTIPTYPSGSIGFVVASK 248

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 6

>sp|Q9Y8H7|SPEE_NEUCR Spermidine synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=spe-3 PE=3 SV=1

 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 5/105 (4%)

Query: 25  KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
           KN   ++++ ++ P     PAESLFQ  YF+L+  ALR GG++ +QA   W  L  +   
Sbjct: 157 KNTFDVIITDSSDPE---GPAESLFQKPYFQLLHDALREGGVITTQAENQWLHLPLITKL 213

Query: 85  LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHANSHVPM 129
            + C  VFP   Y  T +PTYPSGQIGF++ S+    +AN  VP+
Sbjct: 214 KKDCKEVFPVAEYAYTTIPTYPSGQIGFMVCSK--DPNANVKVPL 256

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|P19623|SPEE_HUMAN Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 14/112 (12%)

Query: 6   GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65
           G+  +   QD  D           ++++ ++ P   + PAESLF+ SY++LM  AL+  G
Sbjct: 156 GFEFMKQNQDAFD-----------VIITDSSDP---MGPAESLFKESYYQLMKTALKEDG 201

Query: 66  IVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
           ++C Q    W  LD +    Q C S+FP VAY    +PTYPSGQIGF+L S+
Sbjct: 202 VLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSK 253

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM). Has a strong preference for putrescine as substrate, and has very low activity towards 1,3-diaminopropane. Has extremely low activity towards spermidine.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|O48661|SPD2_ARATH Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 4/101 (3%)

Query: 15  DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
           D   F+    +     V+  ++ P   + PA+ LF+  +FE ++RALRPGG+VC+QA +L
Sbjct: 186 DGVAFLKNAAEGTYDAVIVDSSDP---IGPAKELFEKPFFESVNRALRPGGVVCTQAESL 242

Query: 75  WYSLDCVGNTLQHCASVFP-RVAYGATCVPTYPSGQIGFVL 114
           W  +D + + + +C  +F   V Y  T VPTYPSG IGF+L
Sbjct: 243 WLHMDIIEDIVSNCRDIFKGSVNYAWTSVPTYPSGVIGFML 283

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9XY92|SPEE_DICDI Spermidine synthase OS=Dictyostelium discoideum GN=spsA PE=3 SV=2

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 59/100 (59%), Gaps = 4/100 (4%)

Query: 15  DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
           D  +FM    K    ++++ ++ P   + PA+ LF+ +Y+EL+  AL PGGIVCSQ  ++
Sbjct: 143 DGMEFMRQR-KGEFDVIITDSSDP---IGPAQGLFERAYYELLKAALAPGGIVCSQCESM 198

Query: 75  WYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVL 114
           W  LD +      C  ++P V Y  T +P+YP G IGF+L
Sbjct: 199 WLHLDTIKGLTTFCKELYPNVEYAYTSIPSYPGGSIGFIL 238

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM). Has a strong preference for putrescine as substrate.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9ZUB3|SPD1_ARATH Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 61/101 (60%), Gaps = 4/101 (3%)

Query: 15  DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
           D   F+    +     V+  ++ P   + PA+ LF+  +F+ ++RALRPGG+VC+QA +L
Sbjct: 182 DGVAFLKNAAEGSYDAVIVDSSDP---IGPAKELFEKPFFQSVARALRPGGVVCTQAESL 238

Query: 75  WYSLDCVGNTLQHCASVFP-RVAYGATCVPTYPSGQIGFVL 114
           W  +D + + + +C  +F   V Y  T VPTYPSG IGF+L
Sbjct: 239 WLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFML 279

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q64674|SPEE_MOUSE Spermidine synthase OS=Mus musculus GN=Srm PE=2 SV=1

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 14/112 (12%)

Query: 6   GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65
           G+  +   QD  D           ++++ ++ P   + PAESLF+ SY++LM  AL+  G
Sbjct: 156 GFEFMKQNQDAFD-----------VIITDSSDP---MGPAESLFKESYYQLMKTALKEDG 201

Query: 66  IVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
           I+C Q    W  LD +      C S+FP V Y    +PTYPSGQIGF+L S+
Sbjct: 202 ILCCQGECQWLHLDLIKEMRHFCKSLFPVVDYAYCSIPTYPSGQIGFMLCSK 253

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM). Has a strong preference for putrescine as substrate, and has very low activity towards 1,3-diaminopropane. Has extremely low activity towards spermidine.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9ZTR0|SPD2_PEA Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 4/101 (3%)

Query: 15  DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
           D   F+    +     V+  ++ P   + PA+ LF+  +F+ ++RALRPGG++C+QA ++
Sbjct: 189 DGVAFLKAAPEGTYDAVIVDSSDP---IGPAQELFEKPFFQSVARALRPGGVMCTQAESI 245

Query: 75  WYSLDCVGNTLQHCASVFP-RVAYGATCVPTYPSGQIGFVL 114
           W  +D + + + +C  +F   V Y  T VPTYPSG IGF+L
Sbjct: 246 WLHMDIIEDIVSNCRHIFKGSVNYAWTTVPTYPSGMIGFML 286

Pisum sativum (taxid: 3888)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9ZTR1|SPD1_PEA Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 4/101 (3%)

Query: 15  DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
           D   F+    +     V+  ++ P   + PA+ LF+  +FE ++RALRPGG+VC+QA ++
Sbjct: 181 DGVAFLKAAPEGTYDAVIVDSSDP---IGPAQELFEKPFFESVARALRPGGVVCTQAESI 237

Query: 75  WYSLDCVGNTLQHCASVFP-RVAYGATCVPTYPSGQIGFVL 114
           W  +  + + + +C  VF   V Y  T VPTYPSG IGF+L
Sbjct: 238 WLHMHIIEDIVVNCRQVFKGSVNYAWTTVPTYPSGMIGFML 278

Pisum sativum (taxid: 3888)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q96556|SPD1_DATST Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 51/74 (68%), Gaps = 1/74 (1%)

Query: 42  VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP-RVAYGAT 100
           + PA+ LF+  +FE ++RALRPGG+VC+QA ++W  +  + + + +C  +F   V Y  T
Sbjct: 178 IGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWT 237

Query: 101 CVPTYPSGQIGFVL 114
            VPTYPSG IGF+L
Sbjct: 238 TVPTYPSGVIGFML 251

Datura stramonium (taxid: 4076)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
383857837	293	PREDICTED: spermidine synthase-like [Meg	0.628	0.283	0.616	3e-23
156538693	288	PREDICTED: spermidine synthase-like isof	0.75	0.343	0.509	9e-23
380021423	293	PREDICTED: spermidine synthase-like [Api	0.628	0.283	0.604	2e-22
322796443	174	hypothetical protein SINV_14635 [Solenop	0.795	0.603	0.491	5e-22
340723867	294	PREDICTED: spermidine synthase-like [Bom	0.628	0.282	0.581	7e-22
110762382	293	PREDICTED: spermidine synthase [Apis mel	0.628	0.283	0.593	8e-22
242023526	295	Spermidine synthase, putative [Pediculus	0.75	0.335	0.495	6e-21
350422672	294	PREDICTED: spermidine synthase-like [Bom	0.628	0.282	0.569	7e-21
357605077	288	putative spermidine synthase [Danaus ple	0.643	0.295	0.545	1e-20
328698378	293	PREDICTED: spermidine synthase-like [Acy	0.643	0.290	0.545	2e-20

>gi|383857837|ref|XP_003704410.1| PREDICTED: spermidine synthase-like [Megachile rotundata]

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 64/86 (74%), Gaps = 3/86 (3%)

Query: 30  LVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA 89
           ++++ ++ P   V PAE LF+ SYF LM  AL+PGGIVCSQAGT W +LD V  TLQHC 
Sbjct: 157 VIITDSSDP---VGPAECLFKESYFSLMKTALKPGGIVCSQAGTAWANLDHVTQTLQHCK 213

Query: 90  SVFPRVAYGATCVPTYPSGQIGFVLG 115
           SVFP  +YG   VPTYP+GQIGFVLG
Sbjct: 214 SVFPVASYGIVSVPTYPTGQIGFVLG 239

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156538693|ref|XP_001607780.1| PREDICTED: spermidine synthase-like isoform 1 [Nasonia vitripennis] gi|345491872|ref|XP_003426726.1| PREDICTED: spermidine synthase-like isoform 2 [Nasonia vitripennis] gi|345491874|ref|XP_003426727.1| PREDICTED: spermidine synthase-like isoform 3 [Nasonia vitripennis]

 Score =  111 bits (278), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 73/104 (70%), Gaps = 5/104 (4%)

Query: 26  NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL 85
           N   ++++ ++ P   V PA SLFQ  YF L+ +AL+P GIVC QAGT+W +LD V +TL
Sbjct: 153 NEFDVIITDSSDP---VGPAISLFQEPYFALLKKALKPNGIVCCQAGTVWSNLDQVQDTL 209

Query: 86  QHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHANSHVPM 129
            HC S+FP+VAYG + VPTYP+GQIG++LGS  L    N + P+
Sbjct: 210 THCRSIFPKVAYGVSSVPTYPTGQIGYMLGS--LNPETNFNEPL 251

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021423|ref|XP_003694565.1| PREDICTED: spermidine synthase-like [Apis florea]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 63/86 (73%), Gaps = 3/86 (3%)

Query: 30  LVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA 89
           ++++ ++ P   V PAE LFQ SYF LM  AL+PGGIVCSQAGT W +LD V  TLQ C 
Sbjct: 157 VIITDSSDP---VGPAECLFQESYFNLMKSALKPGGIVCSQAGTAWLNLDHVTQTLQRCK 213

Query: 90  SVFPRVAYGATCVPTYPSGQIGFVLG 115
           S+FP  +YG   VPTYP+GQIGFVLG
Sbjct: 214 SLFPVASYGVVSVPTYPTGQIGFVLG 239

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796443|gb|EFZ18973.1| hypothetical protein SINV_14635 [Solenopsis invicta]

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 76/116 (65%), Gaps = 11/116 (9%)

Query: 6   GYPVLSARQDCTDFM----SGPV-KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA 60
           G+  L   Q+  D +    S PV KN   ++++   GP      AE+LF+ SY+EL+  A
Sbjct: 62  GFEFLRNHQEEFDVIVTDSSDPVGKNSVLIILTFCLGP------AENLFKQSYYELLKAA 115

Query: 61  LRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGS 116
           L+PGGI+ SQAGT W ++D V +TLQHC ++FP  AY  T VPTYP+GQIGFVLGS
Sbjct: 116 LKPGGIIASQAGTAWMNMDQVRSTLQHCKTMFPVAAYAVTAVPTYPTGQIGFVLGS 171

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723867|ref|XP_003400308.1| PREDICTED: spermidine synthase-like [Bombus terrestris]

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 61/86 (70%), Gaps = 3/86 (3%)

Query: 30  LVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA 89
           ++++ ++ P   + PAE LF  SYF LM  AL+PGGIVCSQAGT W +L  V  TLQHC 
Sbjct: 158 VIITDSSDP---IGPAECLFHESYFNLMKNALKPGGIVCSQAGTAWLNLSHVTQTLQHCK 214

Query: 90  SVFPRVAYGATCVPTYPSGQIGFVLG 115
           S+FP   YG   VPTYP+GQIGFVLG
Sbjct: 215 SLFPVATYGIVSVPTYPTGQIGFVLG 240

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110762382|ref|XP_001120306.1| PREDICTED: spermidine synthase [Apis mellifera]

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 62/86 (72%), Gaps = 3/86 (3%)

Query: 30  LVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA 89
           ++++ ++ P   V PAE LFQ SYF LM  AL+P GIVCSQAGT W +LD V  TLQ C 
Sbjct: 157 VIITDSSDP---VGPAECLFQESYFNLMKSALKPDGIVCSQAGTAWLNLDHVTQTLQRCK 213

Query: 90  SVFPRVAYGATCVPTYPSGQIGFVLG 115
           S+FP  +YG   VPTYP+GQIGFVLG
Sbjct: 214 SLFPVASYGVVSVPTYPTGQIGFVLG 239

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023526|ref|XP_002432183.1| Spermidine synthase, putative [Pediculus humanus corporis] gi|212517580|gb|EEB19445.1| Spermidine synthase, putative [Pediculus humanus corporis]

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 4/103 (3%)

Query: 14  QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73
            D  +FM    KN   ++++ ++ P   V PA SLF+ +YF L+  AL+P GI+CSQ GT
Sbjct: 142 DDGFEFMKKH-KNEFDVIITDSSDP---VGPAVSLFEETYFSLIKSALKPNGIMCSQGGT 197

Query: 74  LWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGS 116
           +W +LD V +TLQH    FP V YG   VPTYP GQIGF LGS
Sbjct: 198 VWSNLDIVKSTLQHVGKTFPVVDYGICHVPTYPDGQIGFALGS 240

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422672|ref|XP_003493245.1| PREDICTED: spermidine synthase-like [Bombus impatiens]

 Score =  105 bits (261), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 60/86 (69%), Gaps = 3/86 (3%)

Query: 30  LVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA 89
           ++++ ++ P   + PAE LF  SYF LM  AL+PGGIVCSQAGT W +L  V  TLQHC 
Sbjct: 158 VIITDSSDP---IGPAECLFHESYFNLMKNALKPGGIVCSQAGTAWLNLSHVTQTLQHCK 214

Query: 90  SVFPRVAYGATCVPTYPSGQIGFVLG 115
           S+F    YG   VPTYP+GQIGFVLG
Sbjct: 215 SLFAVATYGIVSVPTYPTGQIGFVLG 240

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605077|gb|EHJ64458.1| putative spermidine synthase [Danaus plexippus]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 61/88 (69%), Gaps = 3/88 (3%)

Query: 29  GLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHC 88
            ++++ ++ P   + PA SLFQ +YF LM  AL+P GIVCSQAGT W ++D V NTL  C
Sbjct: 156 DVIITDSSDP---IGPAVSLFQENYFSLMKSALKPNGIVCSQAGTYWDNMDLVKNTLNIC 212

Query: 89  ASVFPRVAYGATCVPTYPSGQIGFVLGS 116
            + FP  AY  T VPTYPSG IGFV+GS
Sbjct: 213 KNQFPSAAYAITSVPTYPSGSIGFVIGS 240

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328698378|ref|XP_001944178.2| PREDICTED: spermidine synthase-like [Acyrthosiphon pisum]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 58/88 (65%), Gaps = 3/88 (3%)

Query: 29  GLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHC 88
            ++++ ++ P   + PA SLFQ SYFELM RALRPGGIVCSQA T W  L        HC
Sbjct: 156 DVIITDSSDP---IGPATSLFQKSYFELMKRALRPGGIVCSQADTFWGHLKNAAAMYNHC 212

Query: 89  ASVFPRVAYGATCVPTYPSGQIGFVLGS 116
             VFP+ AY  + V TYP+GQIGF LGS
Sbjct: 213 KGVFPKAAYATSYVSTYPAGQIGFALGS 240

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
FB|FBgn0037723	299	SpdS "Spermidine Synthase" [Dr	0.742	0.327	0.460	3.1e-19
POMBASE|SPBC12C2.07c	298	SPBC12C2.07c "spermidine synth	0.681	0.302	0.430	1.1e-16
DICTYBASE|DDB_G0268630	284	spsA "Spermidine synthase" [Di	0.742	0.345	0.382	2.9e-16
UNIPROTKB|J9P2P6	247	SRM "Uncharacterized protein"	0.560	0.299	0.513	2.9e-16
UNIPROTKB|P19623	302	SRM "Spermidine synthase" [Hom	0.560	0.245	0.513	3.7e-16
UNIPROTKB|F1NAH1	210	SRM "Uncharacterized protein"	0.560	0.352	0.527	4.7e-16
TAIR|locus:2016129	340	SPDS2 "spermidine synthase 2"	0.75	0.291	0.398	9.6e-16
UNIPROTKB|I3LPB8	302	SRM "Uncharacterized protein"	0.560	0.245	0.513	1.8e-15
RGD|620796	302	Srm "spermidine synthase" [Rat	0.560	0.245	0.5	2.4e-15
ASPGD|ASPL0000062169	292	spdA [Emericella nidulans (tax	0.537	0.243	0.507	4.2e-15

FB|FBgn0037723 SpdS "Spermidine Synthase" [Drosophila melanogaster (taxid:7227)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 47/102 (46%), Positives = 63/102 (61%)

Query:    15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
             D  D+M    KN   ++++ ++ P   + PA SLFQ SY+ELM  AL+  GIVCSQ G+ 
Sbjct:   156 DGFDYMKKH-KNEFDVIITDSSDP---IGPAVSLFQESYYELMKHALKDDGIVCSQGGSF 211

Query:    75 WYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGS 116
             W  LD +  T+  C   F +VAY  T VP+YP G IGFV+GS
Sbjct:   212 WLDLDYIKKTMSGCKEHFAKVAYAVTSVPSYPCGHIGFVMGS 253

GO:0004766 "spermidine synthase activity" evidence=ISS

GO:0008295 "spermidine biosynthetic process" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPBC12C2.07c SPBC12C2.07c "spermidine synthase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 40/93 (43%), Positives = 59/93 (63%)

Query:    25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
             +N   ++++ ++ P     PAE+LFQ  YF+L+S ALR GG++ +QA  +W  L  + N 
Sbjct:   159 QNTFDVIITDSSDPDG---PAEALFQKPYFQLLSDALRGGGVITTQAECMWIHLGVISNV 215

Query:    85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
             L    +VFP V Y  T +PTYPSG IGFV+ S+
Sbjct:   216 LTAVKTVFPNVRYAYTTIPTYPSGSIGFVVASK 248

GO:0004766 "spermidine synthase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0008295 "spermidine biosynthetic process" evidence=ISO

GO:0015940 "pantothenate biosynthetic process" evidence=ISO

DICTYBASE|DDB_G0268630 spsA "Spermidine synthase" [Dictyostelium discoideum (taxid:44689)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 39/102 (38%), Positives = 60/102 (58%)

Query:    15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
             D  +FM    K    ++++ ++ P   + PA+ LF+ +Y+EL+  AL PGGIVCSQ  ++
Sbjct:   143 DGMEFMRQR-KGEFDVIITDSSDP---IGPAQGLFERAYYELLKAALAPGGIVCSQCESM 198

Query:    75 WYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGS 116
             W  LD +      C  ++P V Y  T +P+YP G IGF+L S
Sbjct:   199 WLHLDTIKGLTTFCKELYPNVEYAYTSIPSYPGGSIGFILCS 240

GO:0003824 "catalytic activity" evidence=IEA

GO:0004766 "spermidine synthase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

UNIPROTKB|J9P2P6 SRM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 38/74 (51%), Positives = 49/74 (66%)

Query:    44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
             PAESLF+ SY++LM  AL+  G++C Q    W  LD +    Q C S+FP VAY    +P
Sbjct:   125 PAESLFKESYYQLMKTALKDNGVLCCQGECQWLHLDLIKQMRQFCKSLFPVVAYAYCTIP 184

Query:   104 TYPSGQIGFVLGSQ 117
             TYPSGQIGF+L S+
Sbjct:   185 TYPSGQIGFMLCSK 198

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|P19623 SRM "Spermidine synthase" [Homo sapiens (taxid:9606)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 38/74 (51%), Positives = 49/74 (66%)

Query:    44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
             PAESLF+ SY++LM  AL+  G++C Q    W  LD +    Q C S+FP VAY    +P
Sbjct:   180 PAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIP 239

Query:   104 TYPSGQIGFVLGSQ 117
             TYPSGQIGF+L S+
Sbjct:   240 TYPSGQIGFMLCSK 253

GO:0008295 "spermidine biosynthetic process" evidence=IEA;IDA

GO:0004766 "spermidine synthase activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006595 "polyamine metabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1NAH1 SRM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 39/74 (52%), Positives = 48/74 (64%)

Query:    44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
             PAESLF+ SY++LM  ALR  GI+C Q    W  LD +    Q C S+FP V Y    +P
Sbjct:    89 PAESLFKESYYQLMKTALREDGILCCQGECQWLHLDLIKEMRQFCKSLFPVVEYAYCTIP 148

Query:   104 TYPSGQIGFVLGSQ 117
             TYPSGQIGF+L S+
Sbjct:   149 TYPSGQIGFMLCSK 162

GO:0004766 "spermidine synthase activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

TAIR|locus:2016129 SPDS2 "spermidine synthase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 9.6e-16, P = 9.6e-16
 Identities = 41/103 (39%), Positives = 62/103 (60%)

Query:    15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
             D   F+    +     V+  ++ P   + PA+ LF+  +FE ++RALRPGG+VC+QA +L
Sbjct:   186 DGVAFLKNAAEGTYDAVIVDSSDP---IGPAKELFEKPFFESVNRALRPGGVVCTQAESL 242

Query:    75 WYSLDCVGNTLQHCASVFP-RVAYGATCVPTYPSGQIGFVLGS 116
             W  +D + + + +C  +F   V Y  T VPTYPSG IGF+L S
Sbjct:   243 WLHMDIIEDIVSNCRDIFKGSVNYAWTSVPTYPSGVIGFMLCS 285

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0004766 "spermidine synthase activity" evidence=IDA

GO:0008295 "spermidine biosynthetic process" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009069 "serine family amino acid metabolic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

UNIPROTKB|I3LPB8 SRM "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 195 (73.7 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 38/74 (51%), Positives = 48/74 (64%)

Query:    44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
             PAESLF+ SY++LM  AL+  GI+C Q    W  LD +    Q C S+FP V Y    +P
Sbjct:   180 PAESLFKESYYQLMKTALKEEGILCCQGECQWLHLDLIKEMRQFCKSLFPVVDYAYCTIP 239

Query:   104 TYPSGQIGFVLGSQ 117
             TYPSGQIGF+L S+
Sbjct:   240 TYPSGQIGFMLCSK 253

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0004766 "spermidine synthase activity" evidence=IEA

RGD|620796 Srm "spermidine synthase" [Rattus norvegicus (taxid:10116)]

 Score = 194 (73.4 bits), Expect = 2.4e-15, P = 2.4e-15
 Identities = 37/74 (50%), Positives = 48/74 (64%)

Query:    44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
             PAESLF+ SY++LM  AL+  GI+C Q    W  LD +      C S+FP V+Y    +P
Sbjct:   180 PAESLFKESYYQLMKTALKEDGILCCQGECQWLHLDLIKEMRHFCKSLFPVVSYAYCTIP 239

Query:   104 TYPSGQIGFVLGSQ 117
             TYPSGQIGF+L S+
Sbjct:   240 TYPSGQIGFMLCSK 253

GO:0004766 "spermidine synthase activity" evidence=ISO;IDA

GO:0008295 "spermidine biosynthetic process" evidence=ISO;IDA

GO:0042803 "protein homodimerization activity" evidence=ISO

ASPGD|ASPL0000062169 spdA [Emericella nidulans (taxid:162425)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 36/71 (50%), Positives = 46/71 (64%)

Query:    44 PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
             PAESLFQ  YFEL+  ALR GG++ +QA   W  L  + +  + C  VFP   Y  T +P
Sbjct:   173 PAESLFQKPYFELLRDALRDGGVITTQAENQWLHLPLIADLKKACNEVFPVAEYAYTTIP 232

Query:   104 TYPSGQIGFVL 114
             TYPSGQIGF++
Sbjct:   233 TYPSGQIGFMV 243

GO:0016768 "spermine synthase activity" evidence=RCA

GO:0008295 "spermidine biosynthetic process" evidence=IMP

GO:0004766 "spermidine synthase activity" evidence=IEA;RCA

GO:0006525 "arginine metabolic process" evidence=RCA

GO:0097308 "cellular response to farnesol" evidence=IEP

GO:0005576 "extracellular region" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015940 "pantothenate biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.16	LOW CONFIDENCE prediction!
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	132
pfam01564	240	pfam01564, Spermine_synth, Spermine/spermidine syn	6e-24
PLN02366	308	PLN02366, PLN02366, spermidine synthase	2e-23
TIGR00417	271	TIGR00417, speE, spermidine synthase	3e-22
COG0421	282	COG0421, SpeE, Spermidine synthase [Amino acid tra	5e-15
PRK00811	283	PRK00811, PRK00811, spermidine synthase; Provision	2e-13
COG4262	508	COG4262, COG4262, Predicted spermidine synthase wi	2e-04
PLN02823	336	PLN02823, PLN02823, spermine synthase	0.003

>gnl|CDD|216573 pfam01564, Spermine_synth, Spermine/spermidine synthase

 Score = 92.0 bits (229), Expect = 6e-24
 Identities = 31/75 (41%), Positives = 45/75 (60%)

Query: 42  VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATC 101
           V PAE+LF   +++L+ RAL+  G+  +QA + W  L+ + N L++   VFP V      
Sbjct: 160 VGPAENLFSKEFYDLLKRALKEDGVFVTQAESPWLHLELIINILKNGKKVFPVVMPYVVP 219

Query: 102 VPTYPSGQIGFVLGS 116
           VPTYPSG  GF + S
Sbjct: 220 VPTYPSGGWGFAVCS 234

Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyzes the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase. Length = 240

>gnl|CDD|215208 PLN02366, PLN02366, spermidine synthase

 Score = 92.0 bits (229), Expect = 2e-23
 Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 42  VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFP-RVAYGAT 100
           V PA+ LF+  +FE ++RALRPGG+VC+QA ++W  +D + + +  C   F   V Y  T
Sbjct: 177 VGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWT 236

Query: 101 CVPTYPSGQIGFVLGS 116
            VPTYPSG IGFVL S
Sbjct: 237 TVPTYPSGVIGFVLCS 252

Length = 308

>gnl|CDD|188048 TIGR00417, speE, spermidine synthase

 Score = 88.3 bits (219), Expect = 3e-22
 Identities = 27/76 (35%), Positives = 42/76 (55%)

Query: 42  VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATC 101
           V PAE+LF   ++EL+ +AL P GI  +Q+ + W  L+ + +  +     FP   Y    
Sbjct: 157 VGPAETLFTKEFYELLKKALNPDGIFVAQSESPWLQLELIIDLKRKLKEAFPITEYYTAA 216

Query: 102 VPTYPSGQIGFVLGSQ 117
           +PTYPSG   F + S+
Sbjct: 217 IPTYPSGLWTFTIASK 232

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM [Central intermediary metabolism, Polyamine biosynthesis]. Length = 271

>gnl|CDD|223498 COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]

 Score = 68.9 bits (169), Expect = 5e-15
 Identities = 26/73 (35%), Positives = 41/73 (56%)

Query: 44  PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
           PAE+LF   ++E   RAL+  GI  +QAG+ +   + +    ++ + VF  V      +P
Sbjct: 163 PAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIP 222

Query: 104 TYPSGQIGFVLGS 116
           TYPSG  GF++ S
Sbjct: 223 TYPSGFWGFIVAS 235

Length = 282

>gnl|CDD|234843 PRK00811, PRK00811, spermidine synthase; Provisional

 Score = 64.8 bits (159), Expect = 2e-13
 Identities = 27/73 (36%), Positives = 38/73 (52%)

Query: 44  PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
           PAE LF   ++E   RAL+  GI  +Q+G+ +Y  D + +  +    VFP V      +P
Sbjct: 164 PAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIP 223

Query: 104 TYPSGQIGFVLGS 116
           TYPSG   F   S
Sbjct: 224 TYPSGLWSFTFAS 236

Length = 283

>gnl|CDD|226713 COG4262, COG4262, Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 10/73 (13%)

Query: 48  LFQASYFELMSRALRPGGIVCSQAGTLWYSLD---CVGNTLQHCA-SVFPRVAYGATCVP 103
           L+   ++ L+SR L   G++  QAG+ +++      +  T++     V+P   +    VP
Sbjct: 384 LYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVH----VP 439

Query: 104 TYPSGQIGFVLGS 116
           T+  G+ GF+L +
Sbjct: 440 TF--GEWGFILAA 450

Length = 508

>gnl|CDD|178418 PLN02823, PLN02823, spermine synthase

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 14/81 (17%)

Query: 44  PAESLFQASYFELM-SRALRPGGIVCSQAG-------TLWYSLDCVGNTLQHCASVFPRV 95
           P   L+  S++E +    L PGGI  +QAG          +S   + NTL+    VF  V
Sbjct: 192 PCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFS--SIYNTLRQ---VFKYV 246

Query: 96  AYGATCVPTYPSGQIGFVLGS 116
                 VP++     G+V+ S
Sbjct: 247 VPYTAHVPSFAD-TWGWVMAS 266

Length = 336

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	99.96
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	99.96
PLN02366	308	spermidine synthase	99.96
PRK00811	283	spermidine synthase; Provisional	99.95
PLN02823	336	spermine synthase	99.95
PRK01581	374	speE spermidine synthase; Validated	99.93
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.93
KOG1562|consensus	337		99.91
COG4262	508	Predicted spermidine synthase with an N-terminal m	99.91
PRK00536	262	speE spermidine synthase; Provisional	99.89
PRK03612	521	spermidine synthase; Provisional	99.88
PRK04457	262	spermidine synthase; Provisional	99.68
COG2521	287	Predicted archaeal methyltransferase [General func	99.4
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	99.01
KOG2352|consensus	482		98.77
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.19
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.16
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.09
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.02
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.01
COG4122	219	Predicted O-methyltransferase [General function pr	97.84
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.8
PLN02476	278	O-methyltransferase	97.76
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.74
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	97.68
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	97.65
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	97.65
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.59
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.56
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.55
PRK11524	284	putative methyltransferase; Provisional	97.53
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.5
PLN02589	247	caffeoyl-CoA O-methyltransferase	97.47
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.46
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.42
PRK14904	445	16S rRNA methyltransferase B; Provisional	97.36
PRK14901	434	16S rRNA methyltransferase B; Provisional	97.33
PRK14902	444	16S rRNA methyltransferase B; Provisional	97.3
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.28
COG4121	252	Uncharacterized conserved protein [Function unknow	97.27
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	97.25
COG4123	248	Predicted O-methyltransferase [General function pr	97.23
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.19
KOG1663|consensus	237		97.18
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.18
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.17
PRK14903	431	16S rRNA methyltransferase B; Provisional	97.14
PRK13699	227	putative methylase; Provisional	97.13
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.11
TIGR00438	188	rrmJ cell division protein FtsJ.	97.11
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.06
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	96.99
PLN03075	296	nicotianamine synthase; Provisional	96.89
PLN02232	160	ubiquinone biosynthesis methyltransferase	96.84
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	96.83
PRK10901	427	16S rRNA methyltransferase B; Provisional	96.72
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	96.71
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	96.71
PRK04266	226	fibrillarin; Provisional	96.7
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	96.68
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.63
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.61
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	96.61
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	96.5
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	96.49
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	96.47
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	96.46
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	96.38
PRK14967	223	putative methyltransferase; Provisional	96.38
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.35
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	96.24
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	96.23
PTZ00146	293	fibrillarin; Provisional	96.18
COG0742	187	N6-adenine-specific methylase [DNA replication, re	96.15
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	96.15
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	96.13
PRK07402	196	precorrin-6B methylase; Provisional	96.09
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	95.96
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	95.96
PLN02233	261	ubiquinone biosynthesis methyltransferase	95.96
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	95.96
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	95.95
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	95.92
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	95.85
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	95.84
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	95.78
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	95.77
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	95.69
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	95.67
PLN02244	340	tocopherol O-methyltransferase	95.57
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	95.55
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	95.48
KOG1709|consensus	271		95.45
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	95.42
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	95.39
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	95.35
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	95.32
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	95.19
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	95.14
PLN02490	340	MPBQ/MSBQ methyltransferase	95.1
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	95.1
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	95.09
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	95.07
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	95.06
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	95.04
PRK14968	188	putative methyltransferase; Provisional	94.91
KOG4300|consensus	252		94.89
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	94.88
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	94.86
KOG1271|consensus	227		94.8
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	94.79
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	94.52
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	94.42
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	94.41
PLN02672	1082	methionine S-methyltransferase	94.36
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	94.33
PRK08317	241	hypothetical protein; Provisional	94.32
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	94.32
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	94.24
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	94.23
KOG1661|consensus	237		94.14
PHA03411	279	putative methyltransferase; Provisional	94.11
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	94.07
PRK11207	197	tellurite resistance protein TehB; Provisional	94.05
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	94.05
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	94.02
PRK10258	251	biotin biosynthesis protein BioC; Provisional	93.86
PLN02336	475	phosphoethanolamine N-methyltransferase	93.84
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	93.76
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	93.68
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	93.57
PRK06922	677	hypothetical protein; Provisional	93.53
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	93.38
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	93.37
TIGR00740	239	methyltransferase, putative. A simple BLAST search	93.35
PLN02336	475	phosphoethanolamine N-methyltransferase	93.31
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	93.27
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	93.2
KOG2899|consensus	288		93.08
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	92.97
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	92.79
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	92.7
KOG0780|consensus	483		92.67
PRK10742	250	putative methyltransferase; Provisional	92.48
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	92.43
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	92.38
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	92.33
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	92.21
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	91.84
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	91.67
TIGR00452	314	methyltransferase, putative. Known examples to dat	91.61
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	91.55
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	91.54
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	91.08
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	90.85
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	90.77
PRK12335	287	tellurite resistance protein TehB; Provisional	90.75
COG2961	279	ComJ Protein involved in catabolism of external DN	90.65
KOG1122|consensus	460		90.35
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	90.14
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	89.94
KOG1270|consensus	282		89.88
PRK13255	218	thiopurine S-methyltransferase; Reviewed	89.8
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	89.78
COG4976	287	Predicted methyltransferase (contains TPR repeat)	89.36
KOG1540|consensus	296		89.04
PHA03412	241	putative methyltransferase; Provisional	88.92
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	88.82
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	88.73
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	88.4
KOG1253|consensus	525		88.36
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	88.22
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	87.82
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	87.8
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	87.57
COG2520	341	Predicted methyltransferase [General function pred	87.51
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	87.31
PF05063	176	MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladen	86.9
KOG3010|consensus	261		86.01
TIGR03438	301	probable methyltransferase. This model represents	85.43
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	85.34
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	85.22
COG1041	347	Predicted DNA modification methylase [DNA replicat	84.69
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	84.68
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	84.55
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	83.77
PRK13256	226	thiopurine S-methyltransferase; Reviewed	83.36
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	82.64
PF07090	177	DUF1355: Protein of unknown function (DUF1355); In	82.53
COG2890	280	HemK Methylase of polypeptide chain release factor	82.3
KOG2915|consensus	314		82.16
KOG4589|consensus	232		81.39
PF08351	92	DUF1726: Domain of unknown function (DUF1726); Int	81.34
KOG2940|consensus	325		81.32
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	81.02
KOG0822|consensus	649		80.94
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	80.52
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	80.39

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=99.96  E-value=4.7e-29  Score=189.80  Aligned_cols=113  Identities=26%  Similarity=0.423  Sum_probs=106.1

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCC-eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKN-MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG   82 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~-~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~   82 (132)
                      ++|||++++++||++||++ +.+ +||+||+|++||   .+++..|||.|||+.|+++|+|||++++|+++++.+...++
T Consensus       127 ~~d~r~~i~~~Dg~~~l~~-~~~~~yDvIi~D~~dp---~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~  202 (246)
T PF01564_consen  127 LDDPRVRIIIGDGRKFLKE-TQEEKYDVIIVDLTDP---DGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFK  202 (246)
T ss_dssp             GGSTTEEEEESTHHHHHHT-SSST-EEEEEEESSST---TSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHH
T ss_pred             cCCCceEEEEhhhHHHHHh-ccCCcccEEEEeCCCC---CCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHH
Confidence            6899999999999999999 666 999999999999   78877899999999999999999999999988888889999


Q ss_pred             HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      .+.++++++|++|..|...+|+|+++.|+|++||+..+
T Consensus       203 ~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~s~~~~  240 (246)
T PF01564_consen  203 SILKTLRSVFPQVKPYTAYVPSYGSGWWSFASASKDIN  240 (246)
T ss_dssp             HHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEEESSTT
T ss_pred             HHHHHHHHhCCceEEEEEEcCeecccceeEEEEeCCCC
Confidence            99999999999999999999999999999999999873

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=99.96  E-value=7.9e-29  Score=191.56  Aligned_cols=115  Identities=27%  Similarity=0.432  Sum_probs=107.6

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL   85 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~   85 (132)
                      |||++|+++||++||++ ..++|||||+|++||   .+|+..|||.|||+.|+++|+|+||+++|++++|.+.+.+..+.
T Consensus       129 dpRv~i~i~Dg~~~v~~-~~~~fDvIi~D~tdp---~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~  204 (282)
T COG0421         129 DPRVEIIIDDGVEFLRD-CEEKFDVIIVDSTDP---VGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAY  204 (282)
T ss_pred             CCceEEEeccHHHHHHh-CCCcCCEEEEcCCCC---CCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHH
Confidence            89999999999999999 677999999999999   79999999999999999999999999999999999888999999


Q ss_pred             HHHHhhCCCceEeEEeccCcCCCceeEEEeecCCCcccc
Q psy4593          86 QHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHAN  124 (132)
Q Consensus        86 ~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~~~~~  124 (132)
                      +.++++|+.+..|...+|+|++|.|+|+++|.....+++
T Consensus       205 ~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~~~~~~~~  243 (282)
T COG0421         205 RNVSRVFSIVPPYVAPIPTYPSGFWGFIVASFNKAHPLK  243 (282)
T ss_pred             HHHHhhccccccceeccceecCCceEEEEeecCCCCccc
Confidence            999999999999999999999999999999955443443

>PLN02366 spermidine synthase

Probab=99.96  E-value=3.2e-28  Score=190.43  Aligned_cols=113  Identities=37%  Similarity=0.711  Sum_probs=105.4

Q ss_pred             CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593           3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG   82 (132)
Q Consensus         3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~   82 (132)
                      .++|||++++++||++|+++..+++||+||+|+++|   .+++..|++.+||+.|+++|+|||++++|++++|.+.+.++
T Consensus       141 ~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp---~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~  217 (308)
T PLN02366        141 GFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDP---VGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIE  217 (308)
T ss_pred             ccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCC---CCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHH
Confidence            478999999999999999873367899999999999   68888999999999999999999999999999999989999


Q ss_pred             HHHHHHHhhC-CCceEeEEeccCcCCCceeEEEeecC
Q psy4593          83 NTLQHCASVF-PRVAYGATCVPTYPSGQIGFVLGSQL  118 (132)
Q Consensus        83 ~~~~~l~~vF-~~v~~~~~~~p~~~~~~~~f~~as~~  118 (132)
                      .+.++++++| +.|.+|.+.+|+|++|.|||++||+.
T Consensus       218 ~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~~  254 (308)
T PLN02366        218 DLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSKE  254 (308)
T ss_pred             HHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEECC
Confidence            9999999999 68888899999999999999999997

>PRK00811 spermidine synthase; Provisional

Probab=99.95  E-value=8.6e-28  Score=186.05  Aligned_cols=113  Identities=30%  Similarity=0.497  Sum_probs=106.2

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      ++|||++++++||++|+++ .+++||+||+|++||   .+++..|++.+||+.|+++|+|||++++|+++++.+.+.+..
T Consensus       128 ~~d~rv~v~~~Da~~~l~~-~~~~yDvIi~D~~dp---~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~  203 (283)
T PRK00811        128 YDDPRVELVIGDGIKFVAE-TENSFDVIIVDSTDP---VGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKD  203 (283)
T ss_pred             ccCCceEEEECchHHHHhh-CCCcccEEEECCCCC---CCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHH
Confidence            5799999999999999988 778999999999999   688889999999999999999999999999998888888999


Q ss_pred             HHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          84 TLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        84 ~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      +.++++++|++|..|...+|+||+|.|+|++||+..+
T Consensus       204 i~~tl~~~F~~v~~~~~~vp~~~~~~w~f~~as~~~~  240 (283)
T PRK00811        204 MHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFASKNDD  240 (283)
T ss_pred             HHHHHHHHCCCEEEEEeECCcccCchheeEEeecCcc
Confidence            9999999999999999999999999999999999533

>PLN02823 spermine synthase

Probab=99.95  E-value=3.2e-27  Score=186.60  Aligned_cols=114  Identities=20%  Similarity=0.326  Sum_probs=102.0

Q ss_pred             CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC-CCCcccccHHHHH-HHHHhcCCCcEEEEecCCC--CCCh
Q psy4593           3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV-CPAESLFQASYFE-LMSRALRPGGIVCSQAGTL--WYSL   78 (132)
Q Consensus         3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~-~~~~~L~p~Gil~~~~~~~--~~~~   78 (132)
                      .++|||++++++||++||++ .+++||+||+|++||.  . +++.+|||.|||+ .|+++|+|||++++|++++  +.+.
T Consensus       153 ~~~dprv~v~~~Da~~~L~~-~~~~yDvIi~D~~dp~--~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~  229 (336)
T PLN02823        153 AFCDKRLELIINDARAELEK-RDEKFDVIIGDLADPV--EGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHK  229 (336)
T ss_pred             cccCCceEEEEChhHHHHhh-CCCCccEEEecCCCcc--ccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccH
Confidence            46899999999999999988 7789999999999983  2 5677899999999 9999999999999998774  3466


Q ss_pred             HHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          79 DCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        79 ~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      +.+..+.++++++|++|..|.+.+|+|++ .|+|++||+.+.
T Consensus       230 ~~~~~i~~tl~~vF~~v~~y~~~vPsf~~-~w~f~~aS~~~~  270 (336)
T PLN02823        230 EVFSSIYNTLRQVFKYVVPYTAHVPSFAD-TWGWVMASDHPF  270 (336)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeecCCCCC-ceEEEEEeCCcc
Confidence            78899999999999999999999999976 699999999754

>PRK01581 speE spermidine synthase; Validated

Probab=99.93  E-value=8.4e-26  Score=179.34  Aligned_cols=114  Identities=14%  Similarity=0.148  Sum_probs=103.6

Q ss_pred             CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593           3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG   82 (132)
Q Consensus         3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~   82 (132)
                      +++|||++++++||++|+++ .+++||+||+|++||.  ..++..|||.|||+.|+++|+|||++++|+++++.....+.
T Consensus       203 ~~~DpRV~vvi~Da~~fL~~-~~~~YDVIIvDl~DP~--~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~  279 (374)
T PRK01581        203 AFFDNRVNVHVCDAKEFLSS-PSSLYDVIIIDFPDPA--TELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYW  279 (374)
T ss_pred             cCCCCceEEEECcHHHHHHh-cCCCccEEEEcCCCcc--ccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHH
Confidence            57899999999999999988 7789999999999983  34578999999999999999999999999989887777789


Q ss_pred             HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      .+.++++++|+.+..|.+.+|+|++ .|||++||+.+.
T Consensus       280 ~i~~tL~~af~~v~~y~t~vPsyg~-~WgF~~as~~~~  316 (374)
T PRK01581        280 SIGNTIEHAGLTVKSYHTIVPSFGT-DWGFHIAANSAY  316 (374)
T ss_pred             HHHHHHHHhCCceEEEEEecCCCCC-ceEEEEEeCCcc
Confidence            9999999999999999999999965 699999998643

>TIGR00417 speE spermidine synthase

Probab=99.93  E-value=4.5e-25  Score=169.66  Aligned_cols=112  Identities=30%  Similarity=0.571  Sum_probs=105.2

Q ss_pred             CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593           3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG   82 (132)
Q Consensus         3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~   82 (132)
                      .++++|++++++||++|+++ .+++||+||+|.++|   .+++..|++.+||+.++++|+|||++++++++++.....+.
T Consensus       122 ~~~~~~v~i~~~D~~~~l~~-~~~~yDvIi~D~~~~---~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~  197 (270)
T TIGR00417       122 SYDDPRVDLQIDDGFKFLAD-TENTFDVIIVDSTDP---VGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELIT  197 (270)
T ss_pred             cccCCceEEEECchHHHHHh-CCCCccEEEEeCCCC---CCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHH
Confidence            36789999999999999988 678999999999999   67788999999999999999999999999988888888999


Q ss_pred             HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecC
Q psy4593          83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQL  118 (132)
Q Consensus        83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~  118 (132)
                      .+.++++++|++|..|.+.+|+|++|.|+|++||+.
T Consensus       198 ~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~as~~  233 (270)
T TIGR00417       198 DLKRDVKEAFPITEYYTANIPTYPSGLWTFTIGSKN  233 (270)
T ss_pred             HHHHHHHHHCCCeEEEEEEcCccccchhEEEEEECC
Confidence            999999999999999999999999999999999993

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG1562|consensus

Probab=99.91  E-value=1.8e-24  Score=166.36  Aligned_cols=124  Identities=34%  Similarity=0.561  Sum_probs=115.7

Q ss_pred             CCCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHH
Q psy4593           2 RSYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCV   81 (132)
Q Consensus         2 ~~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~   81 (132)
                      -.|+++|+.++++||..|++....+.|||||+|+.||   .+|+..||...||+.++++|++||+++++++|.|.+.+.+
T Consensus       170 ~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdp---vgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i  246 (337)
T KOG1562|consen  170 CGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDP---VGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYI  246 (337)
T ss_pred             cccCCCceEEEeccHHHHHHHhccCCceEEEEecCCc---cchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHH
Confidence            3599999999999999999995578999999999999   8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCceEeEEeccCcCCCceeEEEee-cCCCccccCCCC
Q psy4593          82 GNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGS-QLLKQHANSHVP  128 (132)
Q Consensus        82 ~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as-~~~~~~~~~~~~  128 (132)
                      ....+..+.+|+.+.+.++.+|+||+|++||.+|| ..++..++.|.+
T Consensus       247 ~e~r~~~~~~f~~t~ya~ttvPTypsg~igf~l~s~~~~~~~~~~p~n  294 (337)
T KOG1562|consen  247 KEGRSFCYVIFDLTAYAITTVPTYPSGRIGFMLCSKLKPDGKYKTPGN  294 (337)
T ss_pred             HHHHHhHHHhcCccceeeecCCCCccceEEEEEecccCCCCCccCCCC
Confidence            99999999999999999999999999999999999 566766666653

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=99.91  E-value=1.4e-24  Score=171.23  Aligned_cols=113  Identities=22%  Similarity=0.329  Sum_probs=104.9

Q ss_pred             CCCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHH
Q psy4593           2 RSYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCV   81 (132)
Q Consensus         2 ~~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~   81 (132)
                      .+|+|||++++++||..|++. ..++||+||+|+.||.  ......|||.|||..++++|+|+|++++|+++++..++.+
T Consensus       341 ~sf~dpRv~Vv~dDAf~wlr~-a~~~fD~vIVDl~DP~--tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vf  417 (508)
T COG4262         341 GSFSDPRVTVVNDDAFQWLRT-AADMFDVVIVDLPDPS--TPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVF  417 (508)
T ss_pred             CCccCCeeEEEeccHHHHHHh-hcccccEEEEeCCCCC--CcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCcee
Confidence            368999999999999999999 7889999999999994  3445799999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCC
Q psy4593          82 GNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLL  119 (132)
Q Consensus        82 ~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~  119 (132)
                      .++.+|+|++=-.+..|.+++|+|  |.|||++|++.+
T Consensus       418 w~i~aTik~AG~~~~Pyhv~VPTF--GeWGf~l~~~~~  453 (508)
T COG4262         418 WRIDATIKSAGYRVWPYHVHVPTF--GEWGFILAAPGD  453 (508)
T ss_pred             eeehhHHHhCcceeeeeEEecCcc--cccceeeccccc
Confidence            999999999988899999999999  579999999874

>PRK00536 speE spermidine synthase; Provisional

Probab=99.89  E-value=3.7e-23  Score=158.51  Aligned_cols=99  Identities=12%  Similarity=0.071  Sum_probs=88.6

Q ss_pred             CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593           3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG   82 (132)
Q Consensus         3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~   82 (132)
                      +|+|||+++++     |+.+..+++|||||+|+.            ++++||+.|+++|+|||++++|+++++.+.+.+.
T Consensus       120 ~~~DpRv~l~~-----~~~~~~~~~fDVIIvDs~------------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~  182 (262)
T PRK00536        120 VKNNKNFTHAK-----QLLDLDIKKYDLIICLQE------------PDIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQ  182 (262)
T ss_pred             hhcCCCEEEee-----hhhhccCCcCCEEEEcCC------------CChHHHHHHHHhcCCCcEEEECCCCcccCHHHHH
Confidence            68999999998     344424579999999963            4589999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      .+.++++++|+.|..|.+.+|+|  |.|||++||+..+
T Consensus       183 ~i~~~l~~~F~~v~~y~~~vp~~--g~wgf~~aS~~~~  218 (262)
T PRK00536        183 NALKNMGDFFSIAMPFVAPLRIL--SNKGYIYASFKTH  218 (262)
T ss_pred             HHHHHHHhhCCceEEEEecCCCc--chhhhheecCCCC
Confidence            99999999999999999999999  5899999999744

>PRK03612 spermidine synthase; Provisional

Probab=99.88  E-value=1.7e-22  Score=167.71  Aligned_cols=111  Identities=16%  Similarity=0.356  Sum_probs=101.3

Q ss_pred             CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC-CcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHH
Q psy4593           3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP-AESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCV   81 (132)
Q Consensus         3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~-~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~   81 (132)
                      .++|||++++++||++|+++ .+++||+||+|.++|   ..+ ..+|||+|||+.++++|+|||++++|+++++.+.+.+
T Consensus       350 ~~~dprv~vi~~Da~~~l~~-~~~~fDvIi~D~~~~---~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~  425 (521)
T PRK03612        350 ALDDPRVTVVNDDAFNWLRK-LAEKFDVIIVDLPDP---SNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAF  425 (521)
T ss_pred             ccCCCceEEEEChHHHHHHh-CCCCCCEEEEeCCCC---CCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHH
Confidence            46789999999999999988 678999999999998   443 4689999999999999999999999998888888889


Q ss_pred             HHHHHHHHhh-CCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          82 GNTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        82 ~~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      ..+.++++++ | .|..|...+|+|  |.|||++||+.++
T Consensus       426 ~~i~~~l~~~gf-~v~~~~~~vps~--g~w~f~~as~~~~  462 (521)
T PRK03612        426 WSIEATLEAAGL-ATTPYHVNVPSF--GEWGFVLAGAGAR  462 (521)
T ss_pred             HHHHHHHHHcCC-EEEEEEeCCCCc--chhHHHeeeCCCC
Confidence            9999999999 9 899999999999  5999999999755

>PRK04457 spermidine synthase; Provisional

Probab=99.68  E-value=9.5e-16  Score=117.70  Aligned_cols=103  Identities=13%  Similarity=0.112  Sum_probs=81.9

Q ss_pred             CCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHH
Q psy4593           5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT   84 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~   84 (132)
                      .++|++++++||++|+++ ..++||+|++|++++   .+++..+++.+||+.|+++|+|||++++|..   ...+.+..+
T Consensus       115 ~~~rv~v~~~Da~~~l~~-~~~~yD~I~~D~~~~---~~~~~~l~t~efl~~~~~~L~pgGvlvin~~---~~~~~~~~~  187 (262)
T PRK04457        115 NGERFEVIEADGAEYIAV-HRHSTDVILVDGFDG---EGIIDALCTQPFFDDCRNALSSDGIFVVNLW---SRDKRYDRY  187 (262)
T ss_pred             CCCceEEEECCHHHHHHh-CCCCCCEEEEeCCCC---CCCccccCcHHHHHHHHHhcCCCcEEEEEcC---CCchhHHHH
Confidence            368999999999999987 667999999999987   5778899999999999999999999999852   233457888


Q ss_pred             HHHHHhhCCCceEeEEeccCcCCCceeEEEeecC
Q psy4593          85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQL  118 (132)
Q Consensus        85 ~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~  118 (132)
                      +++++++|+++.+.   +|...+ .+..++|++.
T Consensus       188 l~~l~~~F~~~~~~---~~~~~~-~N~v~~a~~~  217 (262)
T PRK04457        188 LERLESSFEGRVLE---LPAESH-GNVAVFAFKS  217 (262)
T ss_pred             HHHHHHhcCCcEEE---EecCCC-ccEEEEEECC
Confidence            99999999975432   243333 3445667664

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.40  E-value=9.3e-13  Score=99.29  Aligned_cols=91  Identities=14%  Similarity=0.168  Sum_probs=79.0

Q ss_pred             CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCC---CChH
Q psy4593           3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLW---YSLD   79 (132)
Q Consensus         3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~---~~~~   79 (132)
                      .+.+.+++|+.+|+.+.+++..+++||+||+|.+.    .+.+.+|||.+||+.+.|+|+|||-+..++++|.   +..+
T Consensus       181 ~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPR----fS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d  256 (287)
T COG2521         181 ELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPR----FSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLD  256 (287)
T ss_pred             cccccccEEecccHHHHHhcCCccccceEeeCCCc----cchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCC
Confidence            45677899999999999999778889999999853    4677899999999999999999999999887775   3567


Q ss_pred             HHHHHHHHHHhh-CCCceE
Q psy4593          80 CVGNTLQHCASV-FPRVAY   97 (132)
Q Consensus        80 ~~~~~~~~l~~v-F~~v~~   97 (132)
                      ..+.+.++|+++ |..|..
T Consensus       257 ~~~gVa~RLr~vGF~~v~~  275 (287)
T COG2521         257 LPKGVAERLRRVGFEVVKK  275 (287)
T ss_pred             hhHHHHHHHHhcCceeeee
Confidence            889999999998 886654

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=99.01  E-value=6.4e-10  Score=76.78  Aligned_cols=91  Identities=14%  Similarity=0.259  Sum_probs=63.4

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH   87 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~   87 (132)
                      +++++++|+++.|++ -..++|+|+.|.|.|    .-...|.|.|+|+.++++++|||++++.+.+        ..+.+.
T Consensus        32 ~L~L~~gDa~~~l~~-l~~~~Da~ylDgFsP----~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a--------~~Vr~~   98 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQ-LDARFDAWYLDGFSP----AKNPELWSEELFKKLARLSKPGGTLATYSSA--------GAVRRA   98 (124)
T ss_dssp             EEEEEES-HHHHHHH-B-T-EEEEEE-SS-T----TTSGGGSSHHHHHHHHHHEEEEEEEEES--B--------HHHHHH
T ss_pred             EEEEEEcHHHHHHHh-CcccCCEEEecCCCC----cCCcccCCHHHHHHHHHHhCCCcEEEEeech--------HHHHHH
Confidence            457899999999998 568999999999999    3344699999999999999999999997543        235556


Q ss_pred             HHhh-CCCceEeEEeccCcCCCceeEEEeec
Q psy4593          88 CASV-FPRVAYGATCVPTYPSGQIGFVLGSQ  117 (132)
Q Consensus        88 l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~  117 (132)
                      |.++ |. |    ...|-++ +-..++.|++
T Consensus        99 L~~aGF~-v----~~~~g~g-~Kr~~~~a~~  123 (124)
T PF05430_consen   99 LQQAGFE-V----EKVPGFG-RKREMLRAVK  123 (124)
T ss_dssp             HHHCTEE-E----EEEE-ST-TSSEEEEEEC
T ss_pred             HHHcCCE-E----EEcCCCC-CcchheEEEc
Confidence            6655 43 2    3466664 3566677765

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>KOG2352|consensus

Probab=98.77  E-value=8.1e-09  Score=84.69  Aligned_cols=108  Identities=15%  Similarity=0.146  Sum_probs=84.7

Q ss_pred             CCCcEEEEccHHHHhcCC-----CCCeecEEEEcCC--CCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCCh
Q psy4593           6 GYPVLSARQDCTDFMSGP-----VKNMCGLVVSGAA--GPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSL   78 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~-----~~~~yDvIi~D~~--dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~   78 (132)
                      +.|.+++++||..|+++.     .+.+||+|++|+.  |++...+|+..+.+.+|++.++..|.|.|++++|..+  ++.
T Consensus       344 ~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~--r~~  421 (482)
T KOG2352|consen  344 SDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT--RNS  421 (482)
T ss_pred             hhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec--CCc
Confidence            348999999999999873     2358999997665  4433348899999999999999999999999999755  456


Q ss_pred             HHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          79 DCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        79 ~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      +....+...|+++|++.+.+....     +.+-.++|...+.
T Consensus       422 ~~~~~~~~~l~~vf~~l~~~~~~~-----~~N~il~~~~~~~  458 (482)
T KOG2352|consen  422 SFKDEVLMNLAKVFPQLYHHQLEE-----DVNEILIGQMPPK  458 (482)
T ss_pred             chhHHHHHhhhhhhHHHhhhhccC-----CCceeEEeecChh
Confidence            677899999999999988765442     4555566655543

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.19  E-value=5e-06  Score=71.15  Aligned_cols=71  Identities=11%  Similarity=0.208  Sum_probs=57.3

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH   87 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~   87 (132)
                      +++++++|+++.+++ -..++|+|+.|.|.|    .-...+.|.|+|+.++++++|||.+++.+..        ..+.+.
T Consensus       148 ~l~l~~gd~~~~~~~-~~~~~d~~~lD~FsP----~~np~~W~~~~~~~l~~~~~~~~~~~t~t~a--------~~vr~~  214 (662)
T PRK01747        148 TLDLWFGDANELLPQ-LDARADAWFLDGFAP----AKNPDMWSPNLFNALARLARPGATLATFTSA--------GFVRRG  214 (662)
T ss_pred             EEEEEecCHHHHHHh-ccccccEEEeCCCCC----ccChhhccHHHHHHHHHHhCCCCEEEEeehH--------HHHHHH
Confidence            345888999999998 457899999999999    3445799999999999999999999987522        345556


Q ss_pred             HHhh
Q psy4593          88 CASV   91 (132)
Q Consensus        88 l~~v   91 (132)
                      |+++
T Consensus       215 l~~~  218 (662)
T PRK01747        215 LQEA  218 (662)
T ss_pred             HHHc
Confidence            6654

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.16  E-value=4.7e-06  Score=55.46  Aligned_cols=65  Identities=20%  Similarity=0.187  Sum_probs=45.3

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCC-CCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGR-VVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~-~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++|++++.+|+.++.+....++||+|+.|.+-... .......-...+|++.+.+.|+|||++++.
T Consensus        49 ~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~  114 (117)
T PF13659_consen   49 DDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI  114 (117)
T ss_dssp             TTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            46799999999999855467899999999853210 011122335679999999999999999874

...

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.09  E-value=1e-05  Score=65.59  Aligned_cols=86  Identities=16%  Similarity=0.175  Sum_probs=55.8

Q ss_pred             CCCCCCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccc--cH---HHHHHHHHhcCCCcEEEEecCCCC
Q psy4593           3 SYRGYPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLF--QA---SYFELMSRALRPGGIVCSQAGTLW   75 (132)
Q Consensus         3 ~~~d~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~--t~---eF~~~~~~~L~p~Gil~~~~~~~~   75 (132)
                      .++..+.+++++|+++||++.  ..++||+||+|.+.=.  .+... ++  .+   +-...+.++|+|||++++-+++..
T Consensus       264 g~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~--r~k~~-~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~  340 (393)
T COG1092         264 GLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFA--RSKKQ-EFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH  340 (393)
T ss_pred             CCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccc--cCccc-chhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence            356688999999999999883  2359999999985421  22222 22  22   334668899999999998655554


Q ss_pred             CChHHH-HHHHHHHHhh
Q psy4593          76 YSLDCV-GNTLQHCASV   91 (132)
Q Consensus        76 ~~~~~~-~~~~~~l~~v   91 (132)
                      ...+.+ ..+.+.+.+.
T Consensus       341 ~~~~~f~~~i~~a~~~~  357 (393)
T COG1092         341 FSSDLFLEIIARAAAAA  357 (393)
T ss_pred             cCHHHHHHHHHHHHHhc
Confidence            555444 3333333333

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.02  E-value=1.2e-05  Score=62.71  Aligned_cols=82  Identities=12%  Similarity=0.130  Sum_probs=49.5

Q ss_pred             CCCCCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccHH---HHHHHHHhcCCCcEEEEecCCCCCChH
Q psy4593           4 YRGYPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQAS---YFELMSRALRPGGIVCSQAGTLWYSLD   79 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~e---F~~~~~~~L~p~Gil~~~~~~~~~~~~   79 (132)
                      ++..+++.+.+|+.+|+++. ...+||+||+|.+.    ......-...+   ..+.+.+.|+|||++++-++++....+
T Consensus       171 ~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPs----F~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~  246 (286)
T PF10672_consen  171 LDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPS----FAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPD  246 (286)
T ss_dssp             -CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SS----EESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HH
T ss_pred             CCccceEEEecCHHHHHHHHhcCCCCCEEEECCCC----CCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHH
Confidence            44578999999999999752 34699999999863    22222112344   456678899999999876666666666


Q ss_pred             HHHHHHHHHH
Q psy4593          80 CVGNTLQHCA   89 (132)
Q Consensus        80 ~~~~~~~~l~   89 (132)
                      .+.++++.-.
T Consensus       247 ~l~~~~~~~a  256 (286)
T PF10672_consen  247 FLLEAVAEAA  256 (286)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            5555444443

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.01  E-value=2.5e-05  Score=59.76  Aligned_cols=76  Identities=22%  Similarity=0.227  Sum_probs=61.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      .++.+..+|.+++...   +.||+|++|..||            .++.+.++++|+|||.+++.+.+    -+.....+.
T Consensus       146 d~v~~~~~Dv~~~~~~---~~vDav~LDmp~P------------W~~le~~~~~Lkpgg~~~~y~P~----veQv~kt~~  206 (256)
T COG2519         146 DRVTLKLGDVREGIDE---EDVDAVFLDLPDP------------WNVLEHVSDALKPGGVVVVYSPT----VEQVEKTVE  206 (256)
T ss_pred             cceEEEeccccccccc---cccCEEEEcCCCh------------HHHHHHHHHHhCCCcEEEEEcCC----HHHHHHHHH
Confidence            4488889999998776   3999999999999            47899999999999999997533    246788888


Q ss_pred             HHHhh-CCCceEeEEe
Q psy4593          87 HCASV-FPRVAYGATC  101 (132)
Q Consensus        87 ~l~~v-F~~v~~~~~~  101 (132)
                      .|++. |-+.+.+...
T Consensus       207 ~l~~~g~~~ie~~E~l  222 (256)
T COG2519         207 ALRERGFVDIEAVETL  222 (256)
T ss_pred             HHHhcCccchhhheee
Confidence            88887 7777665544

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.84  E-value=4.3e-05  Score=57.52  Aligned_cols=54  Identities=24%  Similarity=0.282  Sum_probs=45.7

Q ss_pred             CCCcEEEE-ccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           6 GYPVLSAR-QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         6 d~rv~v~~-~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      +++++++. +|+.+.+++...+.||+|++|+--+          -.++||+.+.+.|+|||++++
T Consensus       110 ~~~i~~~~~gdal~~l~~~~~~~fDliFIDadK~----------~yp~~le~~~~lLr~GGliv~  164 (219)
T COG4122         110 DDRIELLLGGDALDVLSRLLDGSFDLVFIDADKA----------DYPEYLERALPLLRPGGLIVA  164 (219)
T ss_pred             cceEEEEecCcHHHHHHhccCCCccEEEEeCChh----------hCHHHHHHHHHHhCCCcEEEE
Confidence            46688999 6999999864568999999998533          148999999999999999997

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.80  E-value=0.00023  Score=52.12  Aligned_cols=81  Identities=10%  Similarity=0.096  Sum_probs=58.6

Q ss_pred             CCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT   84 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~   84 (132)
                      ++++++.+|+.+++... .+..+|.|+++..|||... .-...+...+|++.+++.|+|||.+.+.+.+    ......+
T Consensus        66 ~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~----~~~~~~~  141 (194)
T TIGR00091        66 KNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN----EPLFEDM  141 (194)
T ss_pred             CCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC----HHHHHHH
Confidence            47999999999887542 3458999999999986211 1123566789999999999999999886433    2345556


Q ss_pred             HHHHHhh
Q psy4593          85 LQHCASV   91 (132)
Q Consensus        85 ~~~l~~v   91 (132)
                      .+.+.+.
T Consensus       142 ~~~~~~~  148 (194)
T TIGR00091       142 LKVLSEN  148 (194)
T ss_pred             HHHHHhC
Confidence            6666654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PLN02476 O-methyltransferase

Probab=97.76  E-value=0.00026  Score=55.10  Aligned_cols=54  Identities=17%  Similarity=0.239  Sum_probs=44.4

Q ss_pred             CCcEEEEccHHHHhcCC----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGP----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++++.+|+.++|.+.    ..+.||.|++|+..+          --.++|+.+.+.|+|||+++..
T Consensus       170 ~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~----------~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        170 HKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKR----------MYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             CcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHH----------HHHHHHHHHHHhcCCCcEEEEe
Confidence            58999999999998652    136899999998543          1378899999999999999874

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.74  E-value=3.1e-05  Score=50.95  Aligned_cols=61  Identities=16%  Similarity=0.162  Sum_probs=45.0

Q ss_pred             CCCCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ..+|++++.+|+ .+... ..++||+|+.+. .-.    .....--..++++.+++.|+|||+++++.
T Consensus        50 ~~~~i~~~~~d~-~~~~~-~~~~~D~v~~~~~~~~----~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   50 LSDRITFVQGDA-EFDPD-FLEPFDLVICSGFTLH----FLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             TTTTEEEEESCC-HGGTT-TSSCEEEEEECSGSGG----GCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCeEEEECcc-ccCcc-cCCCCCEEEECCCccc----cccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            468999999999 66555 567899999987 211    11111224678999999999999999863

...

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=97.68  E-value=0.00019  Score=58.45  Aligned_cols=88  Identities=15%  Similarity=0.113  Sum_probs=55.3

Q ss_pred             CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCccccc-----HHHHHHHHHhcCCCcEEEEecCCCCCChH
Q psy4593           7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQ-----ASYFELMSRALRPGGIVCSQAGTLWYSLD   79 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t-----~eF~~~~~~~L~p~Gil~~~~~~~~~~~~   79 (132)
                      .+++++.+|+.+++++.  ..++||+||+|.+--   ......+.+     .++.+.+.+.|+|||+++.-+++.....+
T Consensus       271 ~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f---~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~  347 (396)
T PRK15128        271 SKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKF---VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSD  347 (396)
T ss_pred             CcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCC---CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHH
Confidence            57899999999998642  246899999997531   111112221     34556788999999999987666655555


Q ss_pred             HHHHHHH-HHHhhCCCceE
Q psy4593          80 CVGNTLQ-HCASVFPRVAY   97 (132)
Q Consensus        80 ~~~~~~~-~l~~vF~~v~~   97 (132)
                      .+..++. ...+.-.++.+
T Consensus       348 ~f~~~v~~aa~~~~~~~~~  366 (396)
T PRK15128        348 LFQKIIADAAIDAGRDVQF  366 (396)
T ss_pred             HHHHHHHHHHHHcCCeEEE
Confidence            4444443 33333334443

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=97.65  E-value=0.00056  Score=50.46  Aligned_cols=79  Identities=14%  Similarity=0.116  Sum_probs=55.5

Q ss_pred             CCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCCCCC---cccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593           7 YPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVVCPA---ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG   82 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~~~~---~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~   82 (132)
                      ++++++++|+.+.+.. ..+.+||+|++...+|+  ....   ..+...+|++.+++.|+|||++++...    ......
T Consensus        90 ~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~--~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~----~~~~~~  163 (202)
T PRK00121         90 TNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPW--PKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD----WEGYAE  163 (202)
T ss_pred             CCEEEEecCHHHHHHHHcCccccceEEEECCCCC--CCccccccccCCHHHHHHHHHHcCCCCEEEEEcC----CHHHHH
Confidence            5799999999554542 24578999999876664  2211   223468999999999999999998542    334566


Q ss_pred             HHHHHHHhh
Q psy4593          83 NTLQHCASV   91 (132)
Q Consensus        83 ~~~~~l~~v   91 (132)
                      .+.+.+++.
T Consensus       164 ~~~~~~~~~  172 (202)
T PRK00121        164 YMLEVLSAE  172 (202)
T ss_pred             HHHHHHHhC
Confidence            677777664

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=97.65  E-value=0.00039  Score=52.60  Aligned_cols=53  Identities=15%  Similarity=0.235  Sum_probs=43.0

Q ss_pred             CCcEEEEccHHHHhcCC----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGP----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      .+++++.+|+.+.|.+.    ..++||+|++|+..+         .| .++|+.+.+.|+|||+++.
T Consensus       120 ~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~---------~y-~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        120 HKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKP---------NY-VHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             CcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHH---------HH-HHHHHHHHHhcCCCeEEEE
Confidence            68999999999998652    146899999998543         11 3789999999999999986

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.59  E-value=0.00023  Score=57.75  Aligned_cols=79  Identities=14%  Similarity=0.118  Sum_probs=59.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      ++++++.+||..+++...++++|.|++-.+|||.. .....+.+.+|++.++++|+|||.+.+.+.+.    ..+..+.+
T Consensus       172 ~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~K-krHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~----~y~~~~~e  246 (390)
T PRK14121        172 KNLLIINYDARLLLELLPSNSVEKIFVHFPVPWDK-KPHRRVISEDFLNEALRVLKPGGTLELRTDSE----LYFEFSLE  246 (390)
T ss_pred             CcEEEEECCHHHhhhhCCCCceeEEEEeCCCCccc-cchhhccHHHHHHHHHHHcCCCcEEEEEEECH----HHHHHHHH
Confidence            46999999999877554568999999998899721 22357889999999999999999999875443    33444445


Q ss_pred             HHHh
Q psy4593          87 HCAS   90 (132)
Q Consensus        87 ~l~~   90 (132)
                      .+.+
T Consensus       247 ~~~~  250 (390)
T PRK14121        247 LFLK  250 (390)
T ss_pred             HHHh
Confidence            5543

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.56  E-value=0.00011  Score=56.32  Aligned_cols=79  Identities=19%  Similarity=0.260  Sum_probs=58.5

Q ss_pred             CCCcEEEEccHHH--HhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhc-CCCcEEEEecCCCCCChHHHH
Q psy4593           6 GYPVLSARQDCTD--FMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRAL-RPGGIVCSQAGTLWYSLDCVG   82 (132)
Q Consensus         6 d~rv~v~~~Dg~~--~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L-~p~Gil~~~~~~~~~~~~~~~   82 (132)
                      +.++.++..|..+  |-+. .+..+|.|++|+.+||            +....++++| ++||.++..+-+    .+...
T Consensus        91 ~~~v~~~~~Dv~~~g~~~~-~~~~~DavfLDlp~Pw------------~~i~~~~~~L~~~gG~i~~fsP~----ieQv~  153 (247)
T PF08704_consen   91 DDNVTVHHRDVCEEGFDEE-LESDFDAVFLDLPDPW------------EAIPHAKRALKKPGGRICCFSPC----IEQVQ  153 (247)
T ss_dssp             CTTEEEEES-GGCG--STT--TTSEEEEEEESSSGG------------GGHHHHHHHE-EEEEEEEEEESS----HHHHH
T ss_pred             CCCceeEecceeccccccc-ccCcccEEEEeCCCHH------------HHHHHHHHHHhcCCceEEEECCC----HHHHH
Confidence            4578999999753  3222 3578999999999996            3478899999 899999997533    35678


Q ss_pred             HHHHHHHh-hCCCceEeEEe
Q psy4593          83 NTLQHCAS-VFPRVAYGATC  101 (132)
Q Consensus        83 ~~~~~l~~-vF~~v~~~~~~  101 (132)
                      .....|++ -|.++..+.+.
T Consensus       154 ~~~~~L~~~gf~~i~~~Evl  173 (247)
T PF08704_consen  154 KTVEALREHGFTDIETVEVL  173 (247)
T ss_dssp             HHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHHHCCCeeeEEEEEE
Confidence            88888887 48887776554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.55  E-value=0.00025  Score=52.73  Aligned_cols=103  Identities=14%  Similarity=0.131  Sum_probs=65.1

Q ss_pred             CCcEEEEccHHHH--h----cCCCCCeecEEEEcCCCCCCCCCCC--ccc----ccHHHHHHHHHhcCCCcEEEEecCCC
Q psy4593           7 YPVLSARQDCTDF--M----SGPVKNMCGLVVSGAAGPGRVVCPA--ESL----FQASYFELMSRALRPGGIVCSQAGTL   74 (132)
Q Consensus         7 ~rv~v~~~Dg~~~--l----~~~~~~~yDvIi~D~~dp~~~~~~~--~~L----~t~eF~~~~~~~L~p~Gil~~~~~~~   74 (132)
                      ++++++.+|..+.  +    +....++||+|++|..-.+  .+.+  ...    ...+.++.+.+.|+|||.+++-.   
T Consensus        91 ~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~--~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~---  165 (209)
T PRK11188         91 VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNM--SGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV---  165 (209)
T ss_pred             CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCcc--CCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE---
Confidence            5688999997663  1    1123578999999974221  1111  000    12578899999999999999832   


Q ss_pred             CCChHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEee
Q psy4593          75 WYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGS  116 (132)
Q Consensus        75 ~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as  116 (132)
                      + ..+.+..++..+++.|..+.++. ...+.....=.|++|-
T Consensus       166 ~-~~~~~~~~l~~l~~~f~~v~~~K-p~ssr~~s~e~~~~~~  205 (209)
T PRK11188        166 F-QGEGFDEYLREIRSLFTKVKVRK-PDSSRARSREVYIVAT  205 (209)
T ss_pred             e-cCcCHHHHHHHHHhCceEEEEEC-CccccccCceeEEEee
Confidence            1 22346778889999999998753 2233333345556553

>PRK11524 putative methyltransferase; Provisional

Probab=97.53  E-value=0.00043  Score=53.69  Aligned_cols=68  Identities=10%  Similarity=0.090  Sum_probs=48.5

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCC-CCCC-CCCcc-------cccHHHHHHHHHhcCCCcEEEEec
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGP-GRVV-CPAES-------LFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp-~~~~-~~~~~-------L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      |....-+++.+|+.++++...++++|+|+.|.+=. .... .....       -+-.+++..+++.|+|||.+++..
T Consensus         4 ~~~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524          4 FGNEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             ccCCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            55677789999999999876678999999997411 0000 11100       112578899999999999999864

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.50  E-value=0.00051  Score=52.00  Aligned_cols=66  Identities=15%  Similarity=0.225  Sum_probs=55.2

Q ss_pred             CcEEEEccHHHHhcCCCCC-eecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593           8 PVLSARQDCTDFMSGPVKN-MCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGT   73 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~-~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~   73 (132)
                      ++++++.||.+.+....++ +.|-|.+--+|||.-. ---..|.+.+|++.+++.|+|||.+-+-+..
T Consensus        99 Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~  166 (227)
T COG0220          99 NLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN  166 (227)
T ss_pred             cEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence            8999999999999886444 9999999999998211 1125899999999999999999999986533

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=97.47  E-value=0.00018  Score=55.06  Aligned_cols=54  Identities=7%  Similarity=0.112  Sum_probs=44.7

Q ss_pred             CCCcEEEEccHHHHhcCCC-----CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           6 GYPVLSARQDCTDFMSGPV-----KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~-----~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ..+++++.+|+.+.|.+..     .++||.|++|+.-.         . ..++|+.|.+.|+|||+++.
T Consensus       130 ~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~---------~-Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        130 AHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKD---------N-YINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             CCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHH---------H-hHHHHHHHHHhcCCCeEEEE
Confidence            4799999999999987631     36899999998532         1 26889999999999999986

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.46  E-value=0.00012  Score=54.46  Aligned_cols=55  Identities=20%  Similarity=0.276  Sum_probs=43.3

Q ss_pred             CCCcEEEEccHHHHhcCC----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGP----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +.|++++.+||.++|.+.    ....||.|++|+.-.          --.++|+.+.+.|+|||+++..
T Consensus        96 ~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~----------~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen   96 DDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADKR----------NYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             GGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGG----------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCcEEEEEeccHhhHHHHHhccCCCceeEEEEccccc----------chhhHHHHHhhhccCCeEEEEc
Confidence            368999999999998763    135899999998532          1257899999999999999974

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.42  E-value=0.00018  Score=53.06  Aligned_cols=82  Identities=16%  Similarity=0.184  Sum_probs=59.3

Q ss_pred             CCCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593           6 GYPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      -++++++.+||..++... .+++.|-|.+--+|||.-. -.-..|++.+|++.++++|+|||.+.+.+..    .+.+..
T Consensus        66 l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~----~~y~~~  141 (195)
T PF02390_consen   66 LKNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV----EEYAEW  141 (195)
T ss_dssp             TSSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-----HHHHHH
T ss_pred             ccceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC----HHHHHH
Confidence            478999999999988764 4589999999999998322 2336899999999999999999999886533    345666


Q ss_pred             HHHHHHhh
Q psy4593          84 TLQHCASV   91 (132)
Q Consensus        84 ~~~~l~~v   91 (132)
                      +.+.+.+.
T Consensus       142 ~~~~~~~~  149 (195)
T PF02390_consen  142 MLEQFEES  149 (195)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            66677664

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=97.36  E-value=0.0026  Score=52.37  Aligned_cols=80  Identities=18%  Similarity=0.238  Sum_probs=51.9

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC----Cc---cc----------ccHHHHHHHHHhcCCCcEEEEe
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP----AE---SL----------FQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~----~~---~L----------~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++++.+|+..+..   +.+||+|++|++-..  .+.    +.   .+          ...++++.+.+.|+|||+++..
T Consensus       302 ~v~~~~~Da~~~~~---~~~fD~Vl~D~Pcsg--~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvys  376 (445)
T PRK14904        302 IIETIEGDARSFSP---EEQPDAILLDAPCTG--TGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYA  376 (445)
T ss_pred             eEEEEeCccccccc---CCCCCEEEEcCCCCC--cchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            58899999988752   358999999975321  221    10   01          1346899999999999999988


Q ss_pred             cCCCCCChHHHHHHHHHHHhhCCC
Q psy4593          71 AGTLWYSLDCVGNTLQHCASVFPR   94 (132)
Q Consensus        71 ~~~~~~~~~~~~~~~~~l~~vF~~   94 (132)
                      +++....  .-...++.+.+..++
T Consensus       377 tcs~~~~--Ene~~v~~~l~~~~~  398 (445)
T PRK14904        377 TCSIEPE--ENELQIEAFLQRHPE  398 (445)
T ss_pred             eCCCChh--hHHHHHHHHHHhCCC
Confidence            7665432  224445555444443

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=97.33  E-value=0.0028  Score=51.97  Aligned_cols=104  Identities=15%  Similarity=0.240  Sum_probs=60.7

Q ss_pred             CcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCC----Cccc-------------ccHHHHHHHHHhcCCCcEEE
Q psy4593           8 PVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCP----AESL-------------FQASYFELMSRALRPGGIVC   68 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~----~~~L-------------~t~eF~~~~~~~L~p~Gil~   68 (132)
                      +++++.+|+..+....  ..++||.|++|++-..  .+.    +...             ...+.++.+.+.|+|||.++
T Consensus       304 ~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg--~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lv  381 (434)
T PRK14901        304 SIKILAADSRNLLELKPQWRGYFDRILLDAPCSG--LGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLV  381 (434)
T ss_pred             eEEEEeCChhhcccccccccccCCEEEEeCCCCc--ccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            5889999998875321  2468999999985221  221    1100             14688999999999999998


Q ss_pred             EecCCCCCChHHHHHHHHHHHhhCCCceEeEEeccCcCC--CceeEEEe
Q psy4593          69 SQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPS--GQIGFVLG  115 (132)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~--~~~~f~~a  115 (132)
                      ..+++.  .++.-...+..+.+..|+...-......+|.  +.=||.+|
T Consensus       382 ystcsi--~~~Ene~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a  428 (434)
T PRK14901        382 YATCTL--HPAENEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMA  428 (434)
T ss_pred             EEeCCC--ChhhHHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEE
Confidence            765443  2333344555555555554431100002232  35677776

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=97.30  E-value=0.003  Score=51.92  Aligned_cols=81  Identities=14%  Similarity=0.161  Sum_probs=50.6

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC-----Ccc-------c-----ccHHHHHHHHHhcCCCcEEEEe
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP-----AES-------L-----FQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~-----~~~-------L-----~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++++.+|+.++... -.++||+|++|++-..  .+.     ...       +     ...++++.+.+.|+|||.++..
T Consensus       302 ~v~~~~~D~~~~~~~-~~~~fD~Vl~D~Pcsg--~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys  378 (444)
T PRK14902        302 NIETKALDARKVHEK-FAEKFDKILVDAPCSG--LGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS  378 (444)
T ss_pred             eEEEEeCCcccccch-hcccCCEEEEcCCCCC--CeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            488999999887544 2368999999974211  111     000       0     2357899999999999999876


Q ss_pred             cCCCCCChHHHHHHHHHHHhhCC
Q psy4593          71 AGTLWYSLDCVGNTLQHCASVFP   93 (132)
Q Consensus        71 ~~~~~~~~~~~~~~~~~l~~vF~   93 (132)
                      +++.+..  .-...+..+.+..+
T Consensus       379 tcs~~~~--Ene~vv~~~l~~~~  399 (444)
T PRK14902        379 TCTIEKE--ENEEVIEAFLEEHP  399 (444)
T ss_pred             cCCCChh--hhHHHHHHHHHhCC
Confidence            5554322  23334444444443

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.28  E-value=0.00015  Score=52.09  Aligned_cols=77  Identities=17%  Similarity=0.156  Sum_probs=48.8

Q ss_pred             cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC-cccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593           9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA-ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH   87 (132)
Q Consensus         9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~-~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~   87 (132)
                      ++++..|..+.+.   ..+||+|+.+.+--   .+.. ....-.+|++.++++|+|||.+.+-.... ..   ..   ..
T Consensus        83 v~~~~~d~~~~~~---~~~fD~Iv~NPP~~---~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~-~~---~~---~~  149 (170)
T PF05175_consen   83 VEVVQSDLFEALP---DGKFDLIVSNPPFH---AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH-LG---YE---RL  149 (170)
T ss_dssp             EEEEESSTTTTCC---TTCEEEEEE---SB---TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT-SC---HH---HH
T ss_pred             ccccccccccccc---ccceeEEEEccchh---cccccchhhHHHHHHHHHHhccCCCEEEEEeecC-CC---hH---HH
Confidence            8899999877654   47999999997521   1221 23456999999999999999885421111 11   11   23


Q ss_pred             HHhhCCCceEe
Q psy4593          88 CASVFPRVAYG   98 (132)
Q Consensus        88 l~~vF~~v~~~   98 (132)
                      +++.|..|...
T Consensus       150 l~~~f~~~~~~  160 (170)
T PF05175_consen  150 LKELFGDVEVV  160 (170)
T ss_dssp             HHHHHS--EEE
T ss_pred             HHHhcCCEEEE
Confidence            88889988763

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG4121 Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=0.00036  Score=53.54  Aligned_cols=60  Identities=15%  Similarity=0.079  Sum_probs=51.5

Q ss_pred             CCcEEEEccHHHHhcCCCCC---eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKN---MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~---~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      -.+.++++|+++.+.. -+.   ++|+.+.|.|.|   .-.| .+++.|+|..++++.++||.+++.+
T Consensus       146 ~~l~l~~gd~~~~~p~-~~~~~~~~dAwflDgFsP---~kNP-~mW~~e~l~~~a~~~~~~~~l~t~s  208 (252)
T COG4121         146 LLLGLVIGDAGDGIPP-VPRRRPGTDAWFLDGFRP---VKNP-EMWEDELLNLMARIPYRDPTLATFA  208 (252)
T ss_pred             heeeeeeeehhhcCCc-ccccccCccEEecCCccc---cCCh-hhccHHHHHHHHhhcCCCCceechH
Confidence            3568999999999988 444   799999999999   3333 8899999999999999999999864

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=97.25  E-value=0.0032  Score=48.32  Aligned_cols=83  Identities=16%  Similarity=0.143  Sum_probs=54.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC----Ccc-------------cccHHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP----AES-------------LFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~----~~~-------------L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      .+++++..|+..+-..  ..+||+|++|++-..  .+.    +..             -...+.++.+.+.|+|||.++-
T Consensus       122 ~~v~~~~~D~~~~~~~--~~~fD~Vl~D~Pcsg--~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvY  197 (264)
T TIGR00446       122 LNVAVTNFDGRVFGAA--VPKFDAILLDAPCSG--EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVY  197 (264)
T ss_pred             CcEEEecCCHHHhhhh--ccCCCEEEEcCCCCC--CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            4688999999886433  356999999985321  211    110             1346788999999999999975


Q ss_pred             ecCCCCCChHHHHHHHHHHHhhCCCc
Q psy4593          70 QAGTLWYSLDCVGNTLQHCASVFPRV   95 (132)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~l~~vF~~v   95 (132)
                      -+++  ...+.-..+++.+.+.++..
T Consensus       198 stcs--~~~~Ene~vv~~~l~~~~~~  221 (264)
T TIGR00446       198 STCS--LEPEENEAVVDYLLEKRPDV  221 (264)
T ss_pred             EeCC--CChHHHHHHHHHHHHhCCCc
Confidence            5444  33334455666666666554

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.23  E-value=0.01  Score=45.54  Aligned_cols=87  Identities=11%  Similarity=0.092  Sum_probs=61.8

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCC--CC---------cccccHHHHHHHHHhcCCCcEEEEecCCC
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVC--PA---------ESLFQASYFELMSRALRPGGIVCSQAGTL   74 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~--~~---------~~L~t~eF~~~~~~~L~p~Gil~~~~~~~   74 (132)
                      .+|++++.+|.-+|.+.....+||+||+..+=-..+..  +.         ..+-=.++.+.++.+|+|||.+++=    
T Consensus        94 ~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V----  169 (248)
T COG4123          94 EERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV----  169 (248)
T ss_pred             hhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE----
Confidence            47999999999999988545679999998642100011  11         1334478999999999999999862    


Q ss_pred             CCChHHHHHHHHHHHh-hCCCceE
Q psy4593          75 WYSLDCVGNTLQHCAS-VFPRVAY   97 (132)
Q Consensus        75 ~~~~~~~~~~~~~l~~-vF~~v~~   97 (132)
                       ...+-+..++..+++ .|.--++
T Consensus       170 -~r~erl~ei~~~l~~~~~~~k~i  192 (248)
T COG4123         170 -HRPERLAEIIELLKSYNLEPKRI  192 (248)
T ss_pred             -ecHHHHHHHHHHHHhcCCCceEE
Confidence             334557888999998 4654444

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.19  E-value=0.0014  Score=56.82  Aligned_cols=60  Identities=15%  Similarity=0.231  Sum_probs=44.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcc---c-----ccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAES---L-----FQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~---L-----~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++++.+|+.+|+++ ..++||+||+|.+--    .....   .     .-.+.++.+.+.|+|||++++-+
T Consensus       589 ~~v~~i~~D~~~~l~~-~~~~fDlIilDPP~f----~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~  656 (702)
T PRK11783        589 RQHRLIQADCLAWLKE-AREQFDLIFIDPPTF----SNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN  656 (702)
T ss_pred             cceEEEEccHHHHHHH-cCCCcCEEEECCCCC----CCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            5899999999999976 467899999997521    11111   1     11456778889999999998754

>KOG1663|consensus

Probab=97.18  E-value=0.0018  Score=49.06  Aligned_cols=93  Identities=12%  Similarity=0.125  Sum_probs=64.5

Q ss_pred             CCCCcEEEEccHHHHhcCC----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe-c---C---C
Q psy4593           5 RGYPVLSARQDCTDFMSGP----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ-A---G---T   73 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~-~---~---~   73 (132)
                      -+.+++++.++|.+-|.+.    ....||.+++|..-.         .|. .+|+.+-+.|++||++++. +   +   .
T Consensus       123 v~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~---------nY~-~y~e~~l~Llr~GGvi~~DNvl~~G~v~~  192 (237)
T KOG1663|consen  123 VDHKITFIEGPALESLDELLADGESGTFDFAFVDADKD---------NYS-NYYERLLRLLRVGGVIVVDNVLWPGVVAD  192 (237)
T ss_pred             ccceeeeeecchhhhHHHHHhcCCCCceeEEEEccchH---------HHH-HHHHHHHhhcccccEEEEeccccCCcccC
Confidence            3578999999999988763    357899999998644         344 8999999999999999974 2   2   1


Q ss_pred             CCCChH----HHHHHHHHHHhhCCCceEeEEeccCcCC
Q psy4593          74 LWYSLD----CVGNTLQHCASVFPRVAYGATCVPTYPS  107 (132)
Q Consensus        74 ~~~~~~----~~~~~~~~l~~vF~~v~~~~~~~p~~~~  107 (132)
                      +.....    ..+..++--+......++|.+.+|.+.|
T Consensus       193 p~~~~~~~~~~~r~~~~~n~~l~~D~rV~~s~~~igdG  230 (237)
T KOG1663|consen  193 PDVNTPVRGRSIREALNLNKKLARDPRVYISLLPIGDG  230 (237)
T ss_pred             cccCCCcchhhhhhhhhhhhHhccCcceeeEeeeccCc
Confidence            211111    2222234444556677788888887643

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.18  E-value=0.00099  Score=44.17  Aligned_cols=55  Identities=22%  Similarity=0.265  Sum_probs=41.7

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      -++++++.+|+.+++.. ..++||+|+++....        .  ..++++.+++.|+|||.++++.
T Consensus        68 ~~~~~~~~~~~~~~~~~-~~~~~D~v~~~~~~~--------~--~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        68 VSNIVIVEGDAPEALED-SLPEPDRVFIGGSGG--------L--LQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             CCceEEEeccccccChh-hcCCCCEEEECCcch--------h--HHHHHHHHHHHcCCCCEEEEEe
Confidence            35788888998765544 346899999975321        1  2589999999999999999864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.17  E-value=0.0054  Score=44.89  Aligned_cols=81  Identities=11%  Similarity=0.186  Sum_probs=58.3

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL   85 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~   85 (132)
                      .+++.++.+|+.+++.. ...+||.|++.....          --.++++.+.+.|+|||.+++...    ..+....+.
T Consensus        91 ~~~v~~~~~d~~~~l~~-~~~~~D~V~~~~~~~----------~~~~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~  155 (198)
T PRK00377         91 LNNIVLIKGEAPEILFT-INEKFDRIFIGGGSE----------KLKEIISASWEIIKKGGRIVIDAI----LLETVNNAL  155 (198)
T ss_pred             CCCeEEEEechhhhHhh-cCCCCCEEEECCCcc----------cHHHHHHHHHHHcCCCcEEEEEee----cHHHHHHHH
Confidence            36788999999988866 456899999865322          126789999999999999997532    234467777


Q ss_pred             HHHHhh-CCCceEeEEec
Q psy4593          86 QHCASV-FPRVAYGATCV  102 (132)
Q Consensus        86 ~~l~~v-F~~v~~~~~~~  102 (132)
                      +.+++. | ++...+..+
T Consensus       156 ~~l~~~g~-~~~~~~~~~  172 (198)
T PRK00377        156 SALENIGF-NLEITEVII  172 (198)
T ss_pred             HHHHHcCC-CeEEEEEeh
Confidence            788664 6 666655544

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=97.14  E-value=0.003  Score=51.87  Aligned_cols=84  Identities=14%  Similarity=0.117  Sum_probs=54.3

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC----cc-----------c--ccHHHHHHHHHhcCCCcEEEEe
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA----ES-----------L--FQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~----~~-----------L--~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++++.+|+..+-.. .+++||.|++|++-..  .+..    ..           |  ...+.+..+.+.|+|||+++.-
T Consensus       289 ~v~~~~~Da~~l~~~-~~~~fD~Vl~DaPCsg--~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs  365 (431)
T PRK14903        289 SIEIKIADAERLTEY-VQDTFDRILVDAPCTS--LGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS  365 (431)
T ss_pred             eEEEEECchhhhhhh-hhccCCEEEECCCCCC--CccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            578999999886433 3467999999985422  2221    10           0  3467789999999999999876


Q ss_pred             cCCCCCChHHHHHHHHHHHhhCCCce
Q psy4593          71 AGTLWYSLDCVGNTLQHCASVFPRVA   96 (132)
Q Consensus        71 ~~~~~~~~~~~~~~~~~l~~vF~~v~   96 (132)
                      +++.  ..+.-..+++.+.+.+|...
T Consensus       366 TCs~--~~eEne~vv~~fl~~~~~~~  389 (431)
T PRK14903        366 TCTV--TKEENTEVVKRFVYEQKDAE  389 (431)
T ss_pred             ECCC--ChhhCHHHHHHHHHhCCCcE
Confidence            6553  33334455555555555444

>PRK13699 putative methylase; Provisional

Probab=97.13  E-value=0.0014  Score=49.43  Aligned_cols=63  Identities=14%  Similarity=0.067  Sum_probs=44.6

Q ss_pred             cEEEEccHHHHhcCCCCCeecEEEEcCCCCCC--C-CC--CCcc---cccHHHHHHHHHhcCCCcEEEEec
Q psy4593           9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGR--V-VC--PAES---LFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~--~-~~--~~~~---L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++.+|+++.+++..+++.|+||.|.+=...  . .+  ....   -+..++++.++++|+|||++++..
T Consensus         2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~   72 (227)
T PRK13699          2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY   72 (227)
T ss_pred             CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            47899999999998788999999999742100  0 00  0011   123467799999999999998753

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.11  E-value=0.0041  Score=51.79  Aligned_cols=83  Identities=17%  Similarity=0.160  Sum_probs=55.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCc----c-------------cccHHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAE----S-------------LFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~----~-------------L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      .++.+...|+..+-+. ....||.|++|++=..  .+.-.    .             -...+.++.+.+.|+|||+++-
T Consensus       164 ~nv~v~~~D~~~~~~~-~~~~fD~ILvDaPCSG--~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVY  240 (470)
T PRK11933        164 SNVALTHFDGRVFGAA-LPETFDAILLDAPCSG--EGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVY  240 (470)
T ss_pred             CeEEEEeCchhhhhhh-chhhcCeEEEcCCCCC--CcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence            4578888999986544 4568999999996332  33211    1             1237788899999999999965


Q ss_pred             ecCCCCCChHHHHHHHHHHHhhCCC
Q psy4593          70 QAGTLWYSLDCVGNTLQHCASVFPR   94 (132)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~l~~vF~~   94 (132)
                      -+++  ...++-..+++.+.+.+++
T Consensus       241 STCT--~~~eENE~vV~~~L~~~~~  263 (470)
T PRK11933        241 STCT--LNREENQAVCLWLKETYPD  263 (470)
T ss_pred             ECCC--CCHHHHHHHHHHHHHHCCC
Confidence            4544  3344455556666555654

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.11  E-value=0.0043  Score=44.96  Aligned_cols=87  Identities=18%  Similarity=0.158  Sum_probs=55.1

Q ss_pred             CCcEEEEccHHHH-----hc-CCCCCeecEEEEcCCCCCCCCCC--Ccccc----cHHHHHHHHHhcCCCcEEEEecCCC
Q psy4593           7 YPVLSARQDCTDF-----MS-GPVKNMCGLVVSGAAGPGRVVCP--AESLF----QASYFELMSRALRPGGIVCSQAGTL   74 (132)
Q Consensus         7 ~rv~v~~~Dg~~~-----l~-~~~~~~yDvIi~D~~dp~~~~~~--~~~L~----t~eF~~~~~~~L~p~Gil~~~~~~~   74 (132)
                      ++++++.+|..+.     +. ....++||+|+.|...+.  .+.  ..++-    ..++++.+.+.|+|||.+++..   
T Consensus        72 ~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~--~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~---  146 (188)
T TIGR00438        72 ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNI--SGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV---  146 (188)
T ss_pred             CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCC--CCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE---
Confidence            4677777786432     11 113467999999975321  111  11111    2578999999999999999853   


Q ss_pred             CCChHHHHHHHHHHHhhCCCceEeE
Q psy4593          75 WYSLDCVGNTLQHCASVFPRVAYGA   99 (132)
Q Consensus        75 ~~~~~~~~~~~~~l~~vF~~v~~~~   99 (132)
                       .....+..+++.++..|..+.++.
T Consensus       147 -~~~~~~~~~l~~l~~~~~~~~~~~  170 (188)
T TIGR00438       147 -FQGEEIDEYLNELRKLFEKVKVTK  170 (188)
T ss_pred             -ccCccHHHHHHHHHhhhceEEEeC
Confidence             112235677788888888777644

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.06  E-value=0.0051  Score=45.28  Aligned_cols=71  Identities=17%  Similarity=0.265  Sum_probs=56.6

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      |.=++++++.+||-++|.+ .+ ++|.|++...-.           -.+-++.|..+|+|||.+++|+..    .+....
T Consensus        81 fg~~n~~vv~g~Ap~~L~~-~~-~~daiFIGGg~~-----------i~~ile~~~~~l~~ggrlV~nait----lE~~~~  143 (187)
T COG2242          81 FGVDNLEVVEGDAPEALPD-LP-SPDAIFIGGGGN-----------IEEILEAAWERLKPGGRLVANAIT----LETLAK  143 (187)
T ss_pred             hCCCcEEEEeccchHhhcC-CC-CCCEEEECCCCC-----------HHHHHHHHHHHcCcCCeEEEEeec----HHHHHH
Confidence            4558999999999999988 44 899999976422           267799999999999999999744    345667


Q ss_pred             HHHHHHhh
Q psy4593          84 TLQHCASV   91 (132)
Q Consensus        84 ~~~~l~~v   91 (132)
                      +++.+++.
T Consensus       144 a~~~~~~~  151 (187)
T COG2242         144 ALEALEQL  151 (187)
T ss_pred             HHHHHHHc
Confidence            77777765

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=96.99  E-value=0.0042  Score=45.20  Aligned_cols=52  Identities=21%  Similarity=0.245  Sum_probs=40.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG   72 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~   72 (132)
                      ++++++.+|+.++.   ..++||+|+++....           -.++++.+++.|+|||.+++..+
T Consensus        92 ~~i~~i~~d~~~~~---~~~~fD~I~s~~~~~-----------~~~~~~~~~~~LkpgG~lvi~~~  143 (181)
T TIGR00138        92 NNVEIVNGRAEDFQ---HEEQFDVITSRALAS-----------LNVLLELTLNLLKVGGYFLAYKG  143 (181)
T ss_pred             CCeEEEecchhhcc---ccCCccEEEehhhhC-----------HHHHHHHHHHhcCCCCEEEEEcC
Confidence            46899999998852   356899999976311           14688999999999999998743

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN03075 nicotianamine synthase; Provisional

Probab=96.89  E-value=0.0022  Score=50.40  Aligned_cols=58  Identities=14%  Similarity=0.192  Sum_probs=43.7

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+|++.+.+|+.+....  ..+||+|++++--.   .....   -.+.++.+++.|+|||++++..
T Consensus       176 ~~rV~F~~~Da~~~~~~--l~~FDlVF~~ALi~---~dk~~---k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        176 SKRMFFHTADVMDVTES--LKEYDVVFLAALVG---MDKEE---KVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             cCCcEEEECchhhcccc--cCCcCEEEEecccc---ccccc---HHHHHHHHHHhcCCCcEEEEec
Confidence            36899999999985322  36799999996322   11111   2788999999999999999875

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=96.84  E-value=0.0036  Score=44.50  Aligned_cols=55  Identities=18%  Similarity=0.085  Sum_probs=40.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++.+.+|+.+. .- .+++||+|++...-.    ..+.   -.++++.++++|+|||.+++-
T Consensus        26 ~~i~~~~~d~~~l-p~-~~~~fD~v~~~~~l~----~~~d---~~~~l~ei~rvLkpGG~l~i~   80 (160)
T PLN02232         26 KCIEWIEGDAIDL-PF-DDCEFDAVTMGYGLR----NVVD---RLRAMKEMYRVLKPGSRVSIL   80 (160)
T ss_pred             CceEEEEechhhC-CC-CCCCeeEEEecchhh----cCCC---HHHHHHHHHHHcCcCeEEEEE
Confidence            4789999998873 33 567899999753212    1111   368899999999999999864

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=96.83  E-value=0.007  Score=47.03  Aligned_cols=63  Identities=16%  Similarity=0.173  Sum_probs=41.9

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCCC---------CCCccc--------ccHHHHHHHHHhcCCCcEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRVV---------CPAESL--------FQASYFELMSRALRPGGIVC   68 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~---------~~~~~L--------~t~eF~~~~~~~L~p~Gil~   68 (132)
                      .+++++.+|..+.+.   +.+||+|++|.+- +....         .|...|        +-..+++.+.+.|+|||.++
T Consensus       172 ~~i~~~~~D~~~~~~---~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~  248 (284)
T TIGR03533       172 DRVTLIQSDLFAALP---GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLV  248 (284)
T ss_pred             CcEEEEECchhhccC---CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence            578999999877653   3579999998641 10000         000111        22567888999999999999


Q ss_pred             EecC
Q psy4593          69 SQAG   72 (132)
Q Consensus        69 ~~~~   72 (132)
                      +..+
T Consensus       249 ~e~g  252 (284)
T TIGR03533       249 VEVG  252 (284)
T ss_pred             EEEC
Confidence            8754

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=96.72  E-value=0.018  Score=47.13  Aligned_cols=69  Identities=14%  Similarity=0.089  Sum_probs=43.5

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC-C-CCcc--c-----------ccHHHHHHHHHhcCCCcEEEEecC
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV-C-PAES--L-----------FQASYFELMSRALRPGGIVCSQAG   72 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~-~-~~~~--L-----------~t~eF~~~~~~~L~p~Gil~~~~~   72 (132)
                      +++++.+|+.+.......++||.|++|++-...+. . -+..  .           ...++++.+.+.|+|||.++..++
T Consensus       294 ~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        294 KATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             CeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            36788999976432112467999999985221001 0 0110  0           124689999999999999997765


Q ss_pred             CCCC
Q psy4593          73 TLWY   76 (132)
Q Consensus        73 ~~~~   76 (132)
                      +...
T Consensus       374 s~~~  377 (427)
T PRK10901        374 SILP  377 (427)
T ss_pred             CCCh
Confidence            5443

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=96.71  E-value=0.015  Score=43.19  Aligned_cols=55  Identities=18%  Similarity=0.153  Sum_probs=39.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.++- - .+++||+|+....-.+    .+.   ..++++.+.+.|+|||.+++.
T Consensus        96 ~~v~~~~~d~~~~~-~-~~~~fD~V~~~~~l~~----~~~---~~~~l~~~~~~Lk~gG~l~~~  150 (231)
T TIGR02752        96 HNVELVHGNAMELP-F-DDNSFDYVTIGFGLRN----VPD---YMQVLREMYRVVKPGGKVVCL  150 (231)
T ss_pred             CceEEEEechhcCC-C-CCCCccEEEEeccccc----CCC---HHHHHHHHHHHcCcCeEEEEE
Confidence            57889999987742 2 3578999997643221    111   257899999999999999864

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=96.71  E-value=0.01  Score=44.38  Aligned_cols=84  Identities=18%  Similarity=0.158  Sum_probs=50.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCC-CCCCccc-----------------ccHHHHHHHHHhcCCCcEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRV-VCPAESL-----------------FQASYFELMSRALRPGGIV   67 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~-~~~~~~L-----------------~t~eF~~~~~~~L~p~Gil   67 (132)
                      ++++++.+|+.+.+.   .++||+|+.+.+- +... .......                 .-..|++.+.+.|+|||.+
T Consensus       137 ~~~~~~~~d~~~~~~---~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~  213 (251)
T TIGR03534       137 DNVTFLQSDWFEPLP---GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWL  213 (251)
T ss_pred             CeEEEEECchhccCc---CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEE
Confidence            368999999887542   4689999998641 1000 0011111                 1147889999999999999


Q ss_pred             EEecCCCCCChHHHHHHHHHHHh-hCCCceEe
Q psy4593          68 CSQAGTLWYSLDCVGNTLQHCAS-VFPRVAYG   98 (132)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~l~~-vF~~v~~~   98 (132)
                      ++..+  +.+.   ..+.+.+++ -|..+.++
T Consensus       214 ~~~~~--~~~~---~~~~~~l~~~gf~~v~~~  240 (251)
T TIGR03534       214 LLEIG--YDQG---EAVRALFEAAGFADVETR  240 (251)
T ss_pred             EEEEC--ccHH---HHHHHHHHhCCCCceEEE
Confidence            98642  2222   334444444 37766653

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK04266 fibrillarin; Provisional

Probab=96.70  E-value=0.02  Score=43.21  Aligned_cols=82  Identities=10%  Similarity=0.043  Sum_probs=51.5

Q ss_pred             CCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec--CC-CCC--ChHH
Q psy4593           7 YPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA--GT-LWY--SLDC   80 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~--~~-~~~--~~~~   80 (132)
                      +++..+.+|+..-... .-.++||+|++|..+|+   .      ...+++.+++.|+|||.+++..  .+ .+.  ....
T Consensus       120 ~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~---~------~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~  190 (226)
T PRK04266        120 KNIIPILADARKPERYAHVVEKVDVIYQDVAQPN---Q------AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEI  190 (226)
T ss_pred             CCcEEEECCCCCcchhhhccccCCEEEECCCChh---H------HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHH
Confidence            5688888897641100 01356999999987662   1      1446889999999999998731  11 111  1233


Q ss_pred             HHHHHHHHHhh-CCCceE
Q psy4593          81 VGNTLQHCASV-FPRVAY   97 (132)
Q Consensus        81 ~~~~~~~l~~v-F~~v~~   97 (132)
                      +....+.+++. |..+..
T Consensus       191 ~~~~~~~l~~aGF~~i~~  208 (226)
T PRK04266        191 FKEEIRKLEEGGFEILEV  208 (226)
T ss_pred             HHHHHHHHHHcCCeEEEE
Confidence            45566777765 776654

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=96.68  E-value=0.0051  Score=49.88  Aligned_cols=78  Identities=9%  Similarity=0.014  Sum_probs=51.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCC-CCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAA-GPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL   85 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~   85 (132)
                      .+++++.+|+...+.   ..+||+|+++.+ ...  ...... ...++++.++++|+|||.+.+=. +  .+    ....
T Consensus       281 ~~v~~~~~D~l~~~~---~~~fDlIlsNPPfh~~--~~~~~~-ia~~l~~~a~~~LkpGG~L~iV~-n--r~----l~y~  347 (378)
T PRK15001        281 DRCEFMINNALSGVE---PFRFNAVLCNPPFHQQ--HALTDN-VAWEMFHHARRCLKINGELYIVA-N--RH----LDYF  347 (378)
T ss_pred             ceEEEEEccccccCC---CCCEEEEEECcCcccC--ccCCHH-HHHHHHHHHHHhcccCCEEEEEE-e--cC----cCHH
Confidence            368889999876542   358999999854 220  111212 24689999999999999987532 1  11    1233


Q ss_pred             HHHHhhCCCceE
Q psy4593          86 QHCASVFPRVAY   97 (132)
Q Consensus        86 ~~l~~vF~~v~~   97 (132)
                      ..|++.|+++..
T Consensus       348 ~~L~~~fg~~~~  359 (378)
T PRK15001        348 HKLKKIFGNCTT  359 (378)
T ss_pred             HHHHHHcCCceE
Confidence            667778998875

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.63  E-value=0.016  Score=48.55  Aligned_cols=80  Identities=8%  Similarity=0.022  Sum_probs=58.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL   85 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~   85 (132)
                      .+++++.+|+........+++.|.|.+--+|||.-. ---..|.+++|++.+++.|+|||.+-+.+..    .+.+..++
T Consensus       397 ~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~----~~y~~~~~  472 (506)
T PRK01544        397 TNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI----ENYFYEAI  472 (506)
T ss_pred             CeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC----HHHHHHHH
Confidence            467888888765555545678999999999998322 2346999999999999999999999876433    33344445


Q ss_pred             HHHHh
Q psy4593          86 QHCAS   90 (132)
Q Consensus        86 ~~l~~   90 (132)
                      ..+.+
T Consensus       473 ~~~~~  477 (506)
T PRK01544        473 ELIQQ  477 (506)
T ss_pred             HHHHh
Confidence            55443

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.61  E-value=0.00066  Score=44.60  Aligned_cols=57  Identities=18%  Similarity=0.158  Sum_probs=40.8

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ..+++++.+|..+++.+....++|+|++|....        .=.....++.+..+|+|||+++..
T Consensus        48 ~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~--------~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   48 SDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS--------YEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             -BTEEEEES-THHHHHHHHH--EEEEEEES-----------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC--------HHHHHHHHHHHHHHcCCCeEEEEe
Confidence            357999999999998773347999999998532        113466789999999999999863

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=96.61  E-value=0.021  Score=41.19  Aligned_cols=78  Identities=13%  Similarity=0.100  Sum_probs=51.3

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      ++++++.+|+...+    .++||+|+.+....          .-.++++.+++.|+|||.++++...    .+....+.+
T Consensus        81 ~~i~~~~~d~~~~~----~~~~D~v~~~~~~~----------~~~~~l~~~~~~Lk~gG~lv~~~~~----~~~~~~~~~  142 (187)
T PRK08287         81 GNIDIIPGEAPIEL----PGKADAIFIGGSGG----------NLTAIIDWSLAHLHPGGRLVLTFIL----LENLHSALA  142 (187)
T ss_pred             CCeEEEecCchhhc----CcCCCEEEECCCcc----------CHHHHHHHHHHhcCCCeEEEEEEec----HhhHHHHHH
Confidence            46888888875332    35799999875322          1267899999999999999885311    123455666


Q ss_pred             HHHhh-CCCceEeEEec
Q psy4593          87 HCASV-FPRVAYGATCV  102 (132)
Q Consensus        87 ~l~~v-F~~v~~~~~~~  102 (132)
                      .+++. |..+......+
T Consensus       143 ~l~~~g~~~~~~~~~~~  159 (187)
T PRK08287        143 HLEKCGVSELDCVQLQV  159 (187)
T ss_pred             HHHHCCCCcceEEEEEE
Confidence            67654 66665544433

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=96.50  E-value=0.0064  Score=49.24  Aligned_cols=51  Identities=10%  Similarity=0.150  Sum_probs=42.6

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++++.+|+..++.. ...+||+|++|.|..      +     .+|++.+.+.++++|++.+-
T Consensus        96 ~~~v~~~Da~~~l~~-~~~~fDvIdlDPfGs------~-----~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308        96 NIEVPNEDAANVLRY-RNRKFHVIDIDPFGT------P-----APFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             cEEEEchhHHHHHHH-hCCCCCEEEeCCCCC------c-----HHHHHHHHHhcccCCEEEEE
Confidence            578999999999987 567899999997521      1     47999999999999998765

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=96.49  E-value=0.01  Score=36.79  Aligned_cols=59  Identities=17%  Similarity=0.228  Sum_probs=44.9

Q ss_pred             CCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ...+++++.+|..++... ...+||+|+.+..-..  .    .-....+++.+.+.|+|+|.+++.
T Consensus        45 ~~~~~~~~~~~~~~~~~~-~~~~~d~i~~~~~~~~--~----~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          45 LADNVEVLKGDAEELPPE-ADESFDVIISDPPLHH--L----VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             cccceEEEEcChhhhccc-cCCceEEEEEccceee--h----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            456788999999988753 4578999999875321  1    234688899999999999999863

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.47  E-value=0.0074  Score=45.82  Aligned_cols=57  Identities=18%  Similarity=0.164  Sum_probs=40.8

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .++++++.+|..+.... .+++||+|++...=.+  ...     ..++++.+.+.|+|||++++-
T Consensus        92 ~~~v~~~~~d~~~l~~~-~~~~fD~V~~~~vl~~--~~~-----~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036         92 SDNMQFIHCAAQDIAQH-LETPVDLILFHAVLEW--VAD-----PKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             ccceEEEEcCHHHHhhh-cCCCCCEEEehhHHHh--hCC-----HHHHHHHHHHHcCCCeEEEEE
Confidence            36789999999886433 4578999997532111  111     157899999999999999864

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.46  E-value=0.029  Score=44.18  Aligned_cols=63  Identities=16%  Similarity=0.131  Sum_probs=42.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCC---------CCCCccc--------ccHHHHHHHHHhcCCCcEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRV---------VCPAESL--------FQASYFELMSRALRPGGIVC   68 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~---------~~~~~~L--------~t~eF~~~~~~~L~p~Gil~   68 (132)
                      .+++++.+|..+.+.   +.+||+|+++.+- +...         ..|...|        +-..+++.+++.|+|||.++
T Consensus       184 ~~i~~~~~D~~~~l~---~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~  260 (307)
T PRK11805        184 DRVTLIESDLFAALP---GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLV  260 (307)
T ss_pred             CcEEEEECchhhhCC---CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEE
Confidence            479999999887663   3579999998531 1000         0111112        23577888999999999999


Q ss_pred             EecC
Q psy4593          69 SQAG   72 (132)
Q Consensus        69 ~~~~   72 (132)
                      +..+
T Consensus       261 ~E~g  264 (307)
T PRK11805        261 VEVG  264 (307)
T ss_pred             EEEC
Confidence            8643

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=96.38  E-value=0.0072  Score=44.78  Aligned_cols=51  Identities=25%  Similarity=0.209  Sum_probs=37.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG   72 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~   72 (132)
                      .+++++.+|+.+.+..  ...||+|+++...+    ..         .+.+.+.|+|||.+++..+
T Consensus       128 ~~v~~~~~d~~~~~~~--~~~fD~Ii~~~~~~----~~---------~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       128 DNVIVIVGDGTQGWEP--LAPYDRIYVTAAGP----KI---------PEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             CCeEEEECCcccCCcc--cCCCCEEEEcCCcc----cc---------cHHHHHhcCcCcEEEEEEc
Confidence            5789999999876543  46899999986433    11         1346778999999998643

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK14967 putative methyltransferase; Provisional

Probab=96.38  E-value=0.024  Score=42.19  Aligned_cols=77  Identities=21%  Similarity=0.188  Sum_probs=46.2

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCC-CCCCCCCC-------------CcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAA-GPGRVVCP-------------AESLFQASYFELMSRALRPGGIVCSQAGT   73 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~-dp~~~~~~-------------~~~L~t~eF~~~~~~~L~p~Gil~~~~~~   73 (132)
                      +++++.+|..+++.   +++||+|+.+.. .+......             .....-..+++.+.+.|+|||.+++-...
T Consensus        85 ~~~~~~~d~~~~~~---~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~  161 (223)
T PRK14967         85 DVDVRRGDWARAVE---FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE  161 (223)
T ss_pred             eeEEEECchhhhcc---CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            57788899877643   368999999853 22100000             00111356889999999999999864212


Q ss_pred             CCCChHHHHHHHHHHHhh
Q psy4593          74 LWYSLDCVGNTLQHCASV   91 (132)
Q Consensus        74 ~~~~~~~~~~~~~~l~~v   91 (132)
                      . ..   ...+++.+++.
T Consensus       162 ~-~~---~~~~~~~l~~~  175 (223)
T PRK14967        162 L-SG---VERTLTRLSEA  175 (223)
T ss_pred             c-cC---HHHHHHHHHHC
Confidence            1 11   34555666653

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.35  E-value=0.0088  Score=43.86  Aligned_cols=50  Identities=22%  Similarity=0.271  Sum_probs=39.7

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      +++++.+|+.++- .  .++||+|+.+....           -.++++.+++.|+|||.+++-.
T Consensus        96 ~i~~~~~d~~~~~-~--~~~fDlV~~~~~~~-----------~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107         96 NVTVVHGRAEEFG-Q--EEKFDVVTSRAVAS-----------LSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             CEEEEeccHhhCC-C--CCCccEEEEccccC-----------HHHHHHHHHHhcCCCeEEEEEe
Confidence            4899999998842 2  46899999875322           1689999999999999999763

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.24  E-value=0.0035  Score=39.26  Aligned_cols=55  Identities=20%  Similarity=0.197  Sum_probs=37.3

Q ss_pred             CCCCcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ...+++++.+|+.+. .- .+++||+|+.- +...   .     ---..+++.++|.|+|||.+++
T Consensus        40 ~~~~~~~~~~d~~~l-~~-~~~sfD~v~~~~~~~~---~-----~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   40 KNEGVSFRQGDAEDL-PF-PDNSFDVVFSNSVLHH---L-----EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             TTSTEEEEESBTTSS-SS--TT-EEEEEEESHGGG---S-----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccCchheeehHHhC-cc-ccccccccccccceee---c-----cCHHHHHHHHHHHcCcCeEEeC
Confidence            345666888886665 22 56899999864 3222   1     1237889999999999999974

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=96.23  E-value=0.024  Score=46.42  Aligned_cols=80  Identities=9%  Similarity=0.073  Sum_probs=47.3

Q ss_pred             EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC----Cccc-------------ccHHHHHHHHHhcCCCcEEEEecCCC
Q psy4593          12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP----AESL-------------FQASYFELMSRALRPGGIVCSQAGTL   74 (132)
Q Consensus        12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~----~~~L-------------~t~eF~~~~~~~L~p~Gil~~~~~~~   74 (132)
                      +.+|+..........+||.|++|++-..  .+.    +...             ...+.++.+.+.|+|||.++..+++.
T Consensus       294 ~~~d~~~~~~~~~~~~fD~VllDaPcSg--~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       294 KDGDGRGPSQWAENEQFDRILLDAPCSA--TGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             eccccccccccccccccCEEEEcCCCCC--CcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            5556543221102467999999975221  221    1111             13678999999999999999876554


Q ss_pred             CCChHHHHHHHHHHHhhCCCc
Q psy4593          75 WYSLDCVGNTLQHCASVFPRV   95 (132)
Q Consensus        75 ~~~~~~~~~~~~~l~~vF~~v   95 (132)
                      ..  ..-..+++.+.+.+|..
T Consensus       372 ~~--~Ene~~v~~~l~~~~~~  390 (426)
T TIGR00563       372 LP--EENSEQIKAFLQEHPDF  390 (426)
T ss_pred             Ch--hhCHHHHHHHHHhCCCC
Confidence            32  23344555565566554

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PTZ00146 fibrillarin; Provisional

Probab=96.18  E-value=0.11  Score=40.90  Aligned_cols=96  Identities=11%  Similarity=0.057  Sum_probs=58.9

Q ss_pred             CCcEEEEccHHHHh--cCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe--cCCCCC--Ch-H
Q psy4593           7 YPVLSARQDCTDFM--SGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ--AGTLWY--SL-D   79 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l--~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~--~~~~~~--~~-~   79 (132)
                      +++..+++|+..-.  .. ..+.+|+|++|...|+         -...+...+++.|+|+|.+++-  ..+...  .. .
T Consensus       181 ~NI~~I~~Da~~p~~y~~-~~~~vDvV~~Dva~pd---------q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~  250 (293)
T PTZ00146        181 PNIVPIIEDARYPQKYRM-LVPMVDVIFADVAQPD---------QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEV  250 (293)
T ss_pred             CCCEEEECCccChhhhhc-ccCCCCEEEEeCCCcc---------hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHH
Confidence            67889999986421  11 2357999999996552         1234556789999999999872  222222  22 2


Q ss_pred             HHHHHHHHHHhh-CCCceEeEEeccCcCCCceeEEEe
Q psy4593          80 CVGNTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLG  115 (132)
Q Consensus        80 ~~~~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~a  115 (132)
                      .+..-++.|++. |..+..  ..++.|..+ -.++++
T Consensus       251 ~f~~ev~~L~~~GF~~~e~--v~L~Py~~~-h~~v~~  284 (293)
T PTZ00146        251 VFASEVQKLKKEGLKPKEQ--LTLEPFERD-HAVVIG  284 (293)
T ss_pred             HHHHHHHHHHHcCCceEEE--EecCCccCC-cEEEEE
Confidence            344445888887 886664  345556443 333444

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=96.15  E-value=0.016  Score=42.74  Aligned_cols=59  Identities=15%  Similarity=0.130  Sum_probs=39.9

Q ss_pred             CCCcEEEEccHHHHhcCCCC-CeecEEEEcCCCCCCCCCCCccccc-HHHHHH--HHHhcCCCcEEEEec
Q psy4593           6 GYPVLSARQDCTDFMSGPVK-NMCGLVVSGAAGPGRVVCPAESLFQ-ASYFEL--MSRALRPGGIVCSQA   71 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~-~~yDvIi~D~~dp~~~~~~~~~L~t-~eF~~~--~~~~L~p~Gil~~~~   71 (132)
                      ..+.+++..|+.++|+.... +.||+|++|.+=.       ..+.. ..-+..  -...|+|+|++++-.
T Consensus        92 ~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~-------~~l~~~~~~~~~~~~~~~L~~~~~iv~E~  154 (187)
T COG0742          92 EGEARVLRNDALRALKQLGTREPFDLVFLDPPYA-------KGLLDKELALLLLEENGWLKPGALIVVEH  154 (187)
T ss_pred             ccceEEEeecHHHHHHhcCCCCcccEEEeCCCCc-------cchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence            47889999999999988422 2499999997422       23332 112222  245699999999854

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.15  E-value=0.0099  Score=44.50  Aligned_cols=51  Identities=22%  Similarity=0.260  Sum_probs=39.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG   72 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~   72 (132)
                      +++.++++||......  ...||+|++.+.-+    ..|..         +.+-|+|||.+++..+
T Consensus       120 ~nV~v~~gDG~~G~~~--~aPyD~I~Vtaaa~----~vP~~---------Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         120 ENVTVRHGDGSKGWPE--EAPYDRIIVTAAAP----EVPEA---------LLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CceEEEECCcccCCCC--CCCcCEEEEeeccC----CCCHH---------HHHhcccCCEEEEEEc
Confidence            4599999999998866  57899999987654    34433         3445999999999765

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=96.13  E-value=0.005  Score=45.03  Aligned_cols=57  Identities=12%  Similarity=0.232  Sum_probs=39.5

Q ss_pred             CcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHH--HhcCCCcEEEEec
Q psy4593           8 PVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMS--RALRPGGIVCSQA   71 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~--~~L~p~Gil~~~~   71 (132)
                      +++++..|+..++.+.  ...+||+|++|.+=.     .  .++-.+.++.+.  ..|+++|++++-.
T Consensus        93 ~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~-----~--~~~~~~~l~~l~~~~~l~~~~~ii~E~  153 (183)
T PF03602_consen   93 KIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYA-----K--GLYYEELLELLAENNLLNEDGLIIIEH  153 (183)
T ss_dssp             GEEEEESSHHHHHHHHHHCTS-EEEEEE--STT-----S--CHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ceeeeccCHHHHHHhhcccCCCceEEEECCCcc-----c--chHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence            6889999999998663  468999999996321     1  122355666665  7899999999864

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.09  E-value=0.08  Score=38.48  Aligned_cols=53  Identities=15%  Similarity=0.202  Sum_probs=40.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|+.+.+.. ....+|.|++|...+           -.++++.+.+.|+|||.+++..
T Consensus        90 ~~v~~~~~d~~~~~~~-~~~~~d~v~~~~~~~-----------~~~~l~~~~~~LkpgG~li~~~  142 (196)
T PRK07402         90 KNVEVIEGSAPECLAQ-LAPAPDRVCIEGGRP-----------IKEILQAVWQYLKPGGRLVATA  142 (196)
T ss_pred             CCeEEEECchHHHHhh-CCCCCCEEEEECCcC-----------HHHHHHHHHHhcCCCeEEEEEe
Confidence            4688999998776544 334578888874222           2688999999999999999875

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=95.96  E-value=0.08  Score=42.35  Aligned_cols=76  Identities=11%  Similarity=-0.036  Sum_probs=47.3

Q ss_pred             cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCc-ccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593           9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAE-SLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH   87 (132)
Q Consensus         9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~-~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~   87 (132)
                      .+++..|+...+    +++||+|+++.+=.   .+... .-...+|++.++++|+|||.+.+-+-. +..   +.   ..
T Consensus       247 ~~~~~~D~~~~~----~~~fDlIvsNPPFH---~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~-~l~---y~---~~  312 (342)
T PRK09489        247 GEVFASNVFSDI----KGRFDMIISNPPFH---DGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA-FLP---YP---DL  312 (342)
T ss_pred             CEEEEccccccc----CCCccEEEECCCcc---CCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC-CCC---hH---HH
Confidence            456777875532    46899999986311   11111 112489999999999999998542211 111   11   46


Q ss_pred             HHhhCCCceEe
Q psy4593          88 CASVFPRVAYG   98 (132)
Q Consensus        88 l~~vF~~v~~~   98 (132)
                      +++.|+++...
T Consensus       313 l~~~Fg~~~~l  323 (342)
T PRK09489        313 LDETFGSHEVL  323 (342)
T ss_pred             HHHHcCCeEEE
Confidence            66789988763

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=95.96  E-value=0.019  Score=45.56  Aligned_cols=54  Identities=13%  Similarity=0.087  Sum_probs=39.3

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++++.+|+.+.- . .+++||+|+. ++..-   ...     -.+|++.+++.|+|||.+++.
T Consensus       180 ~~i~~~~~dae~l~-~-~~~~FD~Vi~~~vLeH---v~d-----~~~~L~~l~r~LkPGG~liis  234 (322)
T PLN02396        180 STIEYLCTTAEKLA-D-EGRKFDAVLSLEVIEH---VAN-----PAEFCKSLSALTIPNGATVLS  234 (322)
T ss_pred             cceeEEecCHHHhh-h-ccCCCCEEEEhhHHHh---cCC-----HHHHHHHHHHHcCCCcEEEEE
Confidence            47889999987753 2 3578999996 33221   111     168999999999999999865

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=95.96  E-value=0.016  Score=44.34  Aligned_cols=55  Identities=18%  Similarity=0.088  Sum_probs=38.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+. .- .+++||+|++-..-.    ..+   --.++++.++++|+|||.+++-
T Consensus       127 ~~i~~~~~d~~~l-p~-~~~sfD~V~~~~~l~----~~~---d~~~~l~ei~rvLkpGG~l~i~  181 (261)
T PLN02233        127 KNIEWIEGDATDL-PF-DDCYFDAITMGYGLR----NVV---DRLKAMQEMYRVLKPGSRVSIL  181 (261)
T ss_pred             CCeEEEEcccccC-CC-CCCCEeEEEEecccc----cCC---CHHHHHHHHHHHcCcCcEEEEE
Confidence            5788999997663 22 457899998643211    111   1378899999999999998763

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=95.96  E-value=0.02  Score=43.29  Aligned_cols=55  Identities=16%  Similarity=0.254  Sum_probs=41.3

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|+..+..   ..+||+|+....-.+  .  ..   ...+++.++++|+|||.+++..
T Consensus        76 ~~~~~~~~d~~~~~~---~~~fD~v~~~~~l~~--~--~d---~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683         76 PDCQFVEADIASWQP---PQALDLIFANASLQW--L--PD---HLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             CCCeEEECchhccCC---CCCccEEEEccChhh--C--CC---HHHHHHHHHHhcCCCcEEEEEC
Confidence            568889999887643   358999998754332  1  11   3678999999999999999864

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=95.95  E-value=0.0081  Score=46.59  Aligned_cols=54  Identities=26%  Similarity=0.265  Sum_probs=37.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEE-EcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVV-SGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi-~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++++.+|-+++     +.+||.|+ ++.+..   .+.   =.-..||+.|++.|+|||.++++.
T Consensus       112 ~~v~v~~~D~~~~-----~~~fD~IvSi~~~Eh---vg~---~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  112 DRVEVRLQDYRDL-----PGKFDRIVSIEMFEH---VGR---KNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             STEEEEES-GGG--------S-SEEEEESEGGG---TCG---GGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             CceEEEEeecccc-----CCCCCEEEEEechhh---cCh---hHHHHHHHHHHHhcCCCcEEEEEe
Confidence            5789999986543     33899998 465533   221   123799999999999999999874

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=95.92  E-value=0.015  Score=42.86  Aligned_cols=50  Identities=16%  Similarity=0.140  Sum_probs=36.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++++.+|+.+.+..  ...||+|+++..-+             .+.+.+.+.|+|||.+++..
T Consensus       124 ~~v~~~~~d~~~~~~~--~~~fD~Ii~~~~~~-------------~~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        124 GVVEVYHGDGKRGLEK--HAPFDAIIVTAAAS-------------TIPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             CcEEEEECCcccCCcc--CCCccEEEEccCcc-------------hhhHHHHHhcCcCcEEEEEE
Confidence            3689999999876544  46899999986432             11235678899999998853

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=95.85  E-value=0.0068  Score=45.90  Aligned_cols=55  Identities=18%  Similarity=0.160  Sum_probs=35.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++.+.+||-+ |.- .+++||+|++---=.    ..+.   -...++.++|+|+|||.+++-
T Consensus        98 ~~i~~v~~da~~-lp~-~d~sfD~v~~~fglr----n~~d---~~~~l~E~~RVLkPGG~l~il  152 (233)
T PF01209_consen   98 QNIEFVQGDAED-LPF-PDNSFDAVTCSFGLR----NFPD---RERALREMYRVLKPGGRLVIL  152 (233)
T ss_dssp             -SEEEEE-BTTB---S--TT-EEEEEEES-GG----G-SS---HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCeeEEEcCHHH-hcC-CCCceeEEEHHhhHH----hhCC---HHHHHHHHHHHcCCCeEEEEe
Confidence            378999999876 333 568999999642100    1111   256899999999999998863

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=95.84  E-value=0.017  Score=42.93  Aligned_cols=50  Identities=22%  Similarity=0.103  Sum_probs=36.2

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|+.+....  ...||+|+++..-+    ..         -+.+.+.|+|||.+++..
T Consensus       127 ~~v~~~~gd~~~~~~~--~~~fD~I~~~~~~~----~~---------~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        127 DNVEVIVGDGTLGYEE--NAPYDRIYVTAAGP----DI---------PKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CCeEEEECCcccCCCc--CCCcCEEEECCCcc----cc---------hHHHHHhhCCCcEEEEEE
Confidence            5789999998765433  46899999986433    11         234566899999999864

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.78  E-value=0.049  Score=41.33  Aligned_cols=84  Identities=24%  Similarity=0.223  Sum_probs=49.3

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCC----------CCCCccccc--------HHHHHHHHHhcCCCcE
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRV----------VCPAESLFQ--------ASYFELMSRALRPGGI   66 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~----------~~~~~~L~t--------~eF~~~~~~~L~p~Gi   66 (132)
                      ..+++++.+|..+.+.   ..+||+|+++.+- +...          ..+...|+.        ..+++.+.+.|+|||.
T Consensus       157 ~~~i~~~~~d~~~~~~---~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~  233 (275)
T PRK09328        157 GARVEFLQGDWFEPLP---GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGW  233 (275)
T ss_pred             CCcEEEEEccccCcCC---CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCE
Confidence            3578899999754332   3689999998531 1000          011112222        5677888899999999


Q ss_pred             EEEecCCCCCChHHHHHHHHHHHh-hCCCceE
Q psy4593          67 VCSQAGTLWYSLDCVGNTLQHCAS-VFPRVAY   97 (132)
Q Consensus        67 l~~~~~~~~~~~~~~~~~~~~l~~-vF~~v~~   97 (132)
                      +++..+.  .+..   .+.+.+++ .|..+..
T Consensus       234 l~~e~g~--~~~~---~~~~~l~~~gf~~v~~  260 (275)
T PRK09328        234 LLLEIGY--DQGE---AVRALLAAAGFADVET  260 (275)
T ss_pred             EEEEECc--hHHH---HHHHHHHhCCCceeEE
Confidence            9986422  2222   33334443 4766665

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=95.77  E-value=0.04  Score=44.24  Aligned_cols=87  Identities=15%  Similarity=0.178  Sum_probs=55.0

Q ss_pred             CCcEEEEccHHHHhcCCC-CCeecEEEEcCCCCCCCC---CCC------------cccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPV-KNMCGLVVSGAAGPGRVV---CPA------------ESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~-~~~yDvIi~D~~dp~~~~---~~~------------~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .++.++..|++.+..... ..+||.|++|++=...|+   .|.            -.-+..+.++.+.+.|+|||.++--
T Consensus       208 ~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS  287 (355)
T COG0144         208 RNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS  287 (355)
T ss_pred             CceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            347789999998765522 236999999985322111   111            1224678889999999999999876


Q ss_pred             cCCCCCChHHHHHHHHHHHhhCCCc
Q psy4593          71 AGTLWYSLDCVGNTLQHCASVFPRV   95 (132)
Q Consensus        71 ~~~~~~~~~~~~~~~~~l~~vF~~v   95 (132)
                      ++|..  .+.=..+++.+.+..+.+
T Consensus       288 TCS~~--~eENE~vV~~~L~~~~~~  310 (355)
T COG0144         288 TCSLT--PEENEEVVERFLERHPDF  310 (355)
T ss_pred             ccCCc--hhcCHHHHHHHHHhCCCc
Confidence            65543  233345555555554443

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=95.69  E-value=0.053  Score=42.10  Aligned_cols=84  Identities=21%  Similarity=0.318  Sum_probs=44.8

Q ss_pred             CCeecEEEEcCCCCCCCCCCCcccccHHHH----HHHHHhcCCCcEEEEe-cCCCCCChHHHHHHHHHHHhhCCCceEeE
Q psy4593          25 KNMCGLVVSGAAGPGRVVCPAESLFQASYF----ELMSRALRPGGIVCSQ-AGTLWYSLDCVGNTLQHCASVFPRVAYGA   99 (132)
Q Consensus        25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~----~~~~~~L~p~Gil~~~-~~~~~~~~~~~~~~~~~l~~vF~~v~~~~   99 (132)
                      +.+||+||.|.+|+..-.+.....-...||    .-+++.|+-||-+++- .+..| +     .-+-.|.+.|.....+.
T Consensus       119 ~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw-~-----~~Lyel~~~F~~wt~Fc  192 (299)
T PF06460_consen  119 PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW-N-----AQLYELMGYFSWWTCFC  192 (299)
T ss_dssp             SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--------HHHHHHHTTEEEEEEEE
T ss_pred             CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc-c-----HHHHHHHhhcccEEEEe
Confidence            579999999999875311222222233344    5578999999999986 34443 2     33446778898888777


Q ss_pred             EeccCcCCCceeEEEee
Q psy4593         100 TCVPTYPSGQIGFVLGS  116 (132)
Q Consensus       100 ~~~p~~~~~~~~f~~as  116 (132)
                      +.+=+--+  =+|+++-
T Consensus       193 T~VNtSSS--EaFLigi  207 (299)
T PF06460_consen  193 TAVNTSSS--EAFLIGI  207 (299)
T ss_dssp             EGGGTTSS---EEEEEE
T ss_pred             cccCcccc--ceeEEee
Confidence            66544323  3555553

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=95.67  E-value=0.022  Score=43.14  Aligned_cols=55  Identities=29%  Similarity=0.243  Sum_probs=40.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++++.+|+.++.   ...+||+|++...=.+  .  +.   -..+++.++++|+|||.+++..
T Consensus        72 ~~~~~~~~d~~~~~---~~~~fD~v~~~~~l~~--~--~d---~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         72 RGVDARTGDVRDWK---PKPDTDVVVSNAALQW--V--PE---HADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             cCCcEEEcChhhCC---CCCCceEEEEehhhhh--C--CC---HHHHHHHHHHhCCCCcEEEEEc
Confidence            35788999988763   2468999998654221  1  11   2778999999999999998863

>PLN02244 tocopherol O-methyltransferase

Probab=95.57  E-value=0.024  Score=45.13  Aligned_cols=55  Identities=18%  Similarity=0.194  Sum_probs=39.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+. .- .+++||+|+.-..-.+  .  +.   ...+++.+++.|+|||.+++.
T Consensus       168 ~~v~~~~~D~~~~-~~-~~~~FD~V~s~~~~~h--~--~d---~~~~l~e~~rvLkpGG~lvi~  222 (340)
T PLN02244        168 DKVSFQVADALNQ-PF-EDGQFDLVWSMESGEH--M--PD---KRKFVQELARVAAPGGRIIIV  222 (340)
T ss_pred             CceEEEEcCcccC-CC-CCCCccEEEECCchhc--c--CC---HHHHHHHHHHHcCCCcEEEEE
Confidence            5789999998763 22 4578999997332111  1  11   368999999999999999874

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=95.55  E-value=0.029  Score=41.15  Aligned_cols=55  Identities=20%  Similarity=0.156  Sum_probs=39.9

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|..+...  .+++||+|+....-.+  ..     -...+++.+++.|+|||.+++.
T Consensus        80 ~~~~~~~~d~~~~~~--~~~~fD~vi~~~~l~~--~~-----~~~~~l~~~~~~L~~~G~l~~~  134 (240)
T TIGR02072        80 ENVQFICGDAEKLPL--EDSSFDLIVSNLALQW--CD-----DLSQALSELARVLKPGGLLAFS  134 (240)
T ss_pred             CCCeEEecchhhCCC--CCCceeEEEEhhhhhh--cc-----CHHHHHHHHHHHcCCCcEEEEE
Confidence            467888888876432  3568999998754221  11     1267899999999999999975

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=95.48  E-value=0.087  Score=37.68  Aligned_cols=84  Identities=11%  Similarity=0.050  Sum_probs=49.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCCC-CC------------CcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRVV-CP------------AESLFQASYFELMSRALRPGGIVCSQAG   72 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~-~~------------~~~L~t~eF~~~~~~~L~p~Gil~~~~~   72 (132)
                      .+++++.+|..+..    .++||+|+.+.+- +.... ..            .......+|++.+.+.|+|||.+++...
T Consensus        66 ~~~~~~~~d~~~~~----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~  141 (179)
T TIGR00537        66 VGLDVVMTDLFKGV----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS  141 (179)
T ss_pred             CceEEEEccccccc----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence            35777888866532    3489999988542 10000 00            0111246799999999999999887532


Q ss_pred             CCCCChHHHHHHHHHHHhh-CCCceEe
Q psy4593          73 TLWYSLDCVGNTLQHCASV-FPRVAYG   98 (132)
Q Consensus        73 ~~~~~~~~~~~~~~~l~~v-F~~v~~~   98 (132)
                      +. .+   ...+.+.+++. |......
T Consensus       142 ~~-~~---~~~~~~~l~~~gf~~~~~~  164 (179)
T TIGR00537       142 SL-NG---EPDTFDKLDERGFRYEIVA  164 (179)
T ss_pred             cc-CC---hHHHHHHHHhCCCeEEEEE
Confidence            21 11   34556666654 6544443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>KOG1709|consensus

Probab=95.45  E-value=0.032  Score=42.35  Aligned_cols=41  Identities=12%  Similarity=0.073  Sum_probs=33.0

Q ss_pred             CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593          22 GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus        22 ~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      +..++.||-|..|.|.+.     .+  =+.+|++.+-+.|+|+|+++-
T Consensus       164 ~L~d~~FDGI~yDTy~e~-----yE--dl~~~hqh~~rLLkP~gv~Sy  204 (271)
T KOG1709|consen  164 TLPDKHFDGIYYDTYSEL-----YE--DLRHFHQHVVRLLKPEGVFSY  204 (271)
T ss_pred             cccccCcceeEeechhhH-----HH--HHHHHHHHHhhhcCCCceEEE
Confidence            335577999999999762     11  258999999999999999985

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=95.42  E-value=0.02  Score=43.87  Aligned_cols=57  Identities=19%  Similarity=0.130  Sum_probs=38.9

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .++++++.+|+.+.  ...+++||+|+. ++.-.   ....   -...+++.+++.|+|||.+++.
T Consensus        98 ~~~i~~~~~D~~~~--~~~~~~FD~V~s~~~l~h---~~~~---d~~~~l~~i~r~LkPGG~lvi~  155 (263)
T PTZ00098         98 KNKIEFEANDILKK--DFPENTFDMIYSRDAILH---LSYA---DKKKLFEKCYKWLKPNGILLIT  155 (263)
T ss_pred             CCceEEEECCcccC--CCCCCCeEEEEEhhhHHh---CCHH---HHHHHHHHHHHHcCCCcEEEEE
Confidence            45788888887532  113578999997 54311   1100   1367899999999999999875

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=95.39  E-value=0.037  Score=43.69  Aligned_cols=61  Identities=11%  Similarity=0.121  Sum_probs=41.8

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcc---cccHHHHHHHHHhcCCCcEEEEec
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAES---LFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~---L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .++++.+|+.+ +.. .+++||+|+.|.+=... ......   -.-.++++.+++.|+|||.++...
T Consensus       231 ~i~~~~~D~~~-l~~-~~~~~D~Iv~dPPyg~~-~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~  294 (329)
T TIGR01177       231 DFFVKRGDATK-LPL-SSESVDAIATDPPYGRS-TTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV  294 (329)
T ss_pred             CCeEEecchhc-CCc-ccCCCCEEEECCCCcCc-ccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence            47889999887 333 35789999999642100 111111   124789999999999999998764

This family is found exclusively in the Archaea.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=95.35  E-value=0.049  Score=44.25  Aligned_cols=50  Identities=14%  Similarity=0.302  Sum_probs=39.5

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++++.+|+.+++..  .++||+|++|.+ .     .     ..+|++.+.+.++++|++.+-
T Consensus       108 ~~~v~~~Da~~~l~~--~~~fD~V~lDP~-G-----s-----~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        108 NEKVFNKDANALLHE--ERKFDVVDIDPF-G-----S-----PAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             ceEEEhhhHHHHHhh--cCCCCEEEECCC-C-----C-----cHHHHHHHHHHhcCCCEEEEE
Confidence            456899999999864  356999999975 1     1     257889988889999999764

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=95.32  E-value=0.068  Score=39.59  Aligned_cols=56  Identities=7%  Similarity=0.064  Sum_probs=39.2

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh--cCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA--LRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~--L~p~Gil~~~~   71 (132)
                      .+++++.+|+.+++.. ...+||+|++|.+-.   .+     +..+-++.+.+.  |+|+|++.+-.
T Consensus       102 ~~v~~~~~D~~~~l~~-~~~~fDlV~~DPPy~---~g-----~~~~~l~~l~~~~~l~~~~iv~ve~  159 (199)
T PRK10909        102 GNARVVNTNALSFLAQ-PGTPHNVVFVDPPFR---KG-----LLEETINLLEDNGWLADEALIYVES  159 (199)
T ss_pred             CcEEEEEchHHHHHhh-cCCCceEEEECCCCC---CC-----hHHHHHHHHHHCCCcCCCcEEEEEe
Confidence            3689999999999865 445799999997521   11     234445555553  78999988753

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=95.19  E-value=0.058  Score=39.25  Aligned_cols=56  Identities=16%  Similarity=0.061  Sum_probs=39.5

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +.+++++.+|..+...  .+++||+|+....-.    ..+   -...+++.+++.|+|||.+++-
T Consensus        87 ~~~i~~~~~d~~~~~~--~~~~~D~i~~~~~~~----~~~---~~~~~l~~~~~~L~~gG~l~~~  142 (223)
T TIGR01934        87 PLNIEFIQADAEALPF--EDNSFDAVTIAFGLR----NVT---DIQKALREMYRVLKPGGRLVIL  142 (223)
T ss_pred             CCCceEEecchhcCCC--CCCcEEEEEEeeeeC----Ccc---cHHHHHHHHHHHcCCCcEEEEE
Confidence            4578889999887542  346899998643211    111   1367899999999999999863

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=95.14  E-value=0.04  Score=43.10  Aligned_cols=54  Identities=24%  Similarity=0.287  Sum_probs=40.2

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEE-EcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVV-SGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi-~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++++..|=+.+     .++||-|+ ++.+..   .+.-   .-.+||+.+++.|+|||.++.++
T Consensus       122 ~~v~v~l~d~rd~-----~e~fDrIvSvgmfEh---vg~~---~~~~ff~~~~~~L~~~G~~llh~  176 (283)
T COG2230         122 DNVEVRLQDYRDF-----EEPFDRIVSVGMFEH---VGKE---NYDDFFKKVYALLKPGGRMLLHS  176 (283)
T ss_pred             cccEEEecccccc-----ccccceeeehhhHHH---hCcc---cHHHHHHHHHhhcCCCceEEEEE
Confidence            4777888885543     23499998 577765   3432   24899999999999999999885

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=95.10  E-value=0.31  Score=39.04  Aligned_cols=83  Identities=17%  Similarity=0.157  Sum_probs=51.1

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec-CCC--CCC-----
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA-GTL--WYS-----   77 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~-~~~--~~~-----   77 (132)
                      .++++++.+|+.+. .- .++.||+|+....-.   ..+.    ....++.+++.|+|||.+++-. ..+  |..     
T Consensus       159 ~~~i~~i~gD~e~l-p~-~~~sFDvVIs~~~L~---~~~d----~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~  229 (340)
T PLN02490        159 LKECKIIEGDAEDL-PF-PTDYADRYVSAGSIE---YWPD----PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFAD  229 (340)
T ss_pred             ccCCeEEeccHHhC-CC-CCCceeEEEEcChhh---hCCC----HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhh
Confidence            35788888998763 22 357899999743211   0111    1467999999999999987631 111  110     


Q ss_pred             ----hHHHHHHHHHHHhh-CCCceE
Q psy4593          78 ----LDCVGNTLQHCASV-FPRVAY   97 (132)
Q Consensus        78 ----~~~~~~~~~~l~~v-F~~v~~   97 (132)
                          .....++.+.++++ |..+.+
T Consensus       230 ~~~~~~t~eEl~~lL~~aGF~~V~i  254 (340)
T PLN02490        230 VWMLFPKEEEYIEWFTKAGFKDVKL  254 (340)
T ss_pred             hhccCCCHHHHHHHHHHCCCeEEEE
Confidence                01235666777776 888776

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=95.10  E-value=0.022  Score=39.62  Aligned_cols=55  Identities=16%  Similarity=0.266  Sum_probs=41.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccc-cHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLF-QASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~-t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|..+ +.+.-.++||+|+....-.        .+- ..++++.+++.|+++|++++.
T Consensus        54 ~ni~~~~~d~~~-l~~~~~~~~D~I~~~~~l~--------~~~~~~~~l~~~~~~lk~~G~~i~~  109 (152)
T PF13847_consen   54 DNIEFIQGDIED-LPQELEEKFDIIISNGVLH--------HFPDPEKVLKNIIRLLKPGGILIIS  109 (152)
T ss_dssp             TTEEEEESBTTC-GCGCSSTTEEEEEEESTGG--------GTSHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccceEEeehhc-cccccCCCeeEEEEcCchh--------hccCHHHHHHHHHHHcCCCcEEEEE
Confidence            489999999988 6641127899999885421        111 247899999999999999875

...

>TIGR00536 hemK_fam HemK family putative methylases

Probab=95.09  E-value=0.12  Score=40.07  Aligned_cols=63  Identities=19%  Similarity=0.264  Sum_probs=40.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCCC---------CCCccc--------ccHHHHHHHHHhcCCCcEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRVV---------CPAESL--------FQASYFELMSRALRPGGIVC   68 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~---------~~~~~L--------~t~eF~~~~~~~L~p~Gil~   68 (132)
                      .+++++.+|..+.+..   .+||+|+.+.+- +....         .|...|        +-..+++.+.+.|+|||+++
T Consensus       165 ~~v~~~~~d~~~~~~~---~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~  241 (284)
T TIGR00536       165 HRVEFIQSNLFEPLAG---QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLV  241 (284)
T ss_pred             CcEEEEECchhccCcC---CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence            4689999998765432   379999998532 11000         011111        34567788889999999999


Q ss_pred             EecC
Q psy4593          69 SQAG   72 (132)
Q Consensus        69 ~~~~   72 (132)
                      +-.+
T Consensus       242 ~e~g  245 (284)
T TIGR00536       242 CEIG  245 (284)
T ss_pred             EEEC
Confidence            8654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=95.07  E-value=0.06  Score=41.09  Aligned_cols=77  Identities=14%  Similarity=0.119  Sum_probs=47.2

Q ss_pred             cEEEEccHHHHhcCCCCCeecEEEEcCC-CCCCCC----------CCCcccc--------cHHHHHHHHHhcCCCcEEEE
Q psy4593           9 VLSARQDCTDFMSGPVKNMCGLVVSGAA-GPGRVV----------CPAESLF--------QASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~-dp~~~~----------~~~~~L~--------t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ++++.+|..+++.....++||+|++|.+ -|....          .+...|.        -.++++.+.+.|+|||.+++
T Consensus       135 ~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l  214 (251)
T TIGR03704       135 GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLV  214 (251)
T ss_pred             CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            5788899888775422357999999974 221000          0011121        35788888899999999987


Q ss_pred             ecCCCCCChHHHHHHHHHHHh
Q psy4593          70 QAGTLWYSLDCVGNTLQHCAS   90 (132)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~l~~   90 (132)
                      -.+.     .....+...+++
T Consensus       215 ~~~~-----~~~~~v~~~l~~  230 (251)
T TIGR03704       215 ETSE-----RQAPLAVEAFAR  230 (251)
T ss_pred             EECc-----chHHHHHHHHHH
Confidence            4322     123456666655

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=95.06  E-value=0.068  Score=40.76  Aligned_cols=55  Identities=18%  Similarity=0.253  Sum_probs=38.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|..+ +.- .++.||+|+....-.   ..+.    ....++.+.+.|+|||.+++.
T Consensus       128 ~~v~~~~~d~~~-l~~-~~~~fD~Vi~~~v~~---~~~d----~~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        128 TNVEFRLGEIEA-LPV-ADNSVDVIISNCVIN---LSPD----KERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             CCEEEEEcchhh-CCC-CCCceeEEEEcCccc---CCCC----HHHHHHHHHHHcCCCcEEEEE
Confidence            477888888654 322 356899999875422   1111    257899999999999999873

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=95.04  E-value=0.0064  Score=39.46  Aligned_cols=52  Identities=29%  Similarity=0.362  Sum_probs=36.8

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEE-cC-CCCCCCCCCCcccccHHHHHHHHHhcCCCc
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVS-GA-AGPGRVVCPAESLFQASYFELMSRALRPGG   65 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G   65 (132)
                      ..+++.+.+|+.++- . ..++||+|+. .+ ...   ..+   ---..+++.+.++|+|||
T Consensus        48 ~~~~~~~~~D~~~l~-~-~~~~~D~v~~~~~~~~~---~~~---~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   48 GPKVRFVQADARDLP-F-SDGKFDLVVCSGLSLHH---LSP---EELEALLRRIARLLRPGG  101 (101)
T ss_dssp             TTTSEEEESCTTCHH-H-HSSSEEEEEE-TTGGGG---SSH---HHHHHHHHHHHHTEEEEE
T ss_pred             CCceEEEECCHhHCc-c-cCCCeeEEEEcCCccCC---CCH---HHHHHHHHHHHHHhCCCC
Confidence            458899999998753 3 4579999998 44 211   111   112788999999999998

>PRK14968 putative methyltransferase; Provisional

Probab=94.91  E-value=0.15  Score=36.18  Aligned_cols=63  Identities=16%  Similarity=0.223  Sum_probs=39.7

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCC---------CC----CCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGR---------VV----CPAESLFQASYFELMSRALRPGGIVCSQAGT   73 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~---------~~----~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~   73 (132)
                      ++.++.+|..+.+..   .+||+|+.+..- +..         ..    +.........|++.+.+.|+|||.+++...+
T Consensus        74 ~~~~~~~d~~~~~~~---~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~  150 (188)
T PRK14968         74 GVEVIRSDLFEPFRG---DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS  150 (188)
T ss_pred             ceEEEeccccccccc---cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            388888887664433   489999987531 100         00    0000112467899999999999998876433

>KOG4300|consensus

Probab=94.89  E-value=0.086  Score=39.85  Aligned_cols=56  Identities=20%  Similarity=0.189  Sum_probs=39.4

Q ss_pred             CCcE-EEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVL-SARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~-v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++. .+++||..--+- ++.+||+|+.-+-     .|.  .---.+-++.+++.|+|||++...
T Consensus       125 ~~~~~fvva~ge~l~~l-~d~s~DtVV~Tlv-----LCS--ve~~~k~L~e~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  125 LQVERFVVADGENLPQL-ADGSYDTVVCTLV-----LCS--VEDPVKQLNEVRRLLRPGGRIIFI  181 (252)
T ss_pred             cceEEEEeechhcCccc-ccCCeeeEEEEEE-----Eec--cCCHHHHHHHHHHhcCCCcEEEEE
Confidence            4554 788998885433 7899999996432     111  111267799999999999999864

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=94.88  E-value=0.041  Score=40.55  Aligned_cols=55  Identities=16%  Similarity=0.089  Sum_probs=36.9

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++++++..|..+..   .+++||+|+.-..-.    ... .  ..++++.+++.|+|||.+++.
T Consensus        49 ~~~i~~~~~d~~~~~---~~~~fD~I~~~~~l~----~~~-~--~~~~l~~~~~~LkpgG~l~i~  103 (224)
T smart00828       49 QGRIRIFYRDSAKDP---FPDTYDLVFGFEVIH----HIK-D--KMDLFSNISRHLKDGGHLVLA  103 (224)
T ss_pred             CcceEEEecccccCC---CCCCCCEeehHHHHH----hCC-C--HHHHHHHHHHHcCCCCEEEEE
Confidence            356788888864431   235799998532111    111 1  378999999999999999875

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=94.86  E-value=0.025  Score=42.12  Aligned_cols=88  Identities=18%  Similarity=0.134  Sum_probs=54.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec-----CCCCCChHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA-----GTLWYSLDC   80 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~-----~~~~~~~~~   80 (132)
                      ++++++..|--++.   .+++||+|++- +.--   ..+...|  ..+.+.+.++|+|||.+++-.     +.-|.+.--
T Consensus        89 ~~V~~~~~dvp~~~---P~~~FDLIV~SEVlYY---L~~~~~L--~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~g  160 (201)
T PF05401_consen   89 PHVEWIQADVPEFW---PEGRFDLIVLSEVLYY---LDDAEDL--RAALDRLVAALAPGGHLVFGHARDANCRRWGHAAG  160 (201)
T ss_dssp             SSEEEEES-TTT------SS-EEEEEEES-GGG---SSSHHHH--HHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--
T ss_pred             CCeEEEECcCCCCC---CCCCeeEEEEehHhHc---CCCHHHH--HHHHHHHHHHhCCCCEEEEEEecCCcccccCcccc
Confidence            78999999976653   55899999963 2211   1111111  347889999999999999732     223445445


Q ss_pred             HHHHHHHHHhhCCCceEeEEec
Q psy4593          81 VGNTLQHCASVFPRVAYGATCV  102 (132)
Q Consensus        81 ~~~~~~~l~~vF~~v~~~~~~~  102 (132)
                      ...+...+++.|-.|.-..+.-
T Consensus       161 a~tv~~~~~~~~~~~~~~~~~~  182 (201)
T PF05401_consen  161 AETVLEMLQEHLTEVERVECRG  182 (201)
T ss_dssp             HHHHHHHHHHHSEEEEEEEEE-
T ss_pred             hHHHHHHHHHHhhheeEEEEcC
Confidence            6788899999998887655543

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>KOG1271|consensus

Probab=94.80  E-value=0.075  Score=39.47  Aligned_cols=59  Identities=25%  Similarity=0.366  Sum_probs=37.3

Q ss_pred             cEEEEccHHHHhcCCCCCeecEEE----EcCCC--CCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCC
Q psy4593           9 VLSARQDCTDFMSGPVKNMCGLVV----SGAAG--PGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL   74 (132)
Q Consensus         9 v~v~~~Dg~~~l~~~~~~~yDvIi----~D~~d--p~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~   74 (132)
                      ++.-..|-..= .. ...+||+|+    .|+-.  |   +.+...+  .-+...+.+.|+|||++++-+++.
T Consensus       120 I~f~q~DI~~~-~~-~~~qfdlvlDKGT~DAisLs~---d~~~~r~--~~Y~d~v~~ll~~~gifvItSCN~  184 (227)
T KOG1271|consen  120 IRFQQLDITDP-DF-LSGQFDLVLDKGTLDAISLSP---DGPVGRL--VVYLDSVEKLLSPGGIFVITSCNF  184 (227)
T ss_pred             eeEEEeeccCC-cc-cccceeEEeecCceeeeecCC---CCcccce--eeehhhHhhccCCCcEEEEEecCc
Confidence            45555553321 11 346899988    34432  2   3344444  556788999999999999987664

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=94.79  E-value=0.25  Score=37.73  Aligned_cols=53  Identities=19%  Similarity=0.083  Sum_probs=38.5

Q ss_pred             cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++.+.+||-+ |-= .+++||++.+.-.=.    ..+   --...++.++|.|+|||.+++.
T Consensus       103 i~fv~~dAe~-LPf-~D~sFD~vt~~fglr----nv~---d~~~aL~E~~RVlKpgG~~~vl  155 (238)
T COG2226         103 VEFVVGDAEN-LPF-PDNSFDAVTISFGLR----NVT---DIDKALKEMYRVLKPGGRLLVL  155 (238)
T ss_pred             eEEEEechhh-CCC-CCCccCEEEeeehhh----cCC---CHHHHHHHHHHhhcCCeEEEEE
Confidence            7889999877 443 689999999753211    001   1267799999999999988875

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.52  E-value=0.047  Score=34.99  Aligned_cols=34  Identities=29%  Similarity=0.426  Sum_probs=19.9

Q ss_pred             CeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q psy4593          26 NMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIV   67 (132)
Q Consensus        26 ~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil   67 (132)
                      ++||+|+. .+..-   .   .  --.++++.+++.|+|||++
T Consensus        65 ~~fD~V~~~~vl~~---l---~--~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   65 ESFDLVVASNVLHH---L---E--DIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ---SEEEEE-TTS--------S---HHHHHHHHTTT-TSS-EE
T ss_pred             cccceehhhhhHhh---h---h--hHHHHHHHHHHHcCCCCCC
Confidence            59999995 44332   2   1  2368999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=94.42  E-value=0.028  Score=46.54  Aligned_cols=57  Identities=19%  Similarity=0.339  Sum_probs=40.0

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +.+|+|+.+|.+++  + .+++.|+||+..-..   .+ .++ .+.|.+....+-|+|||++.-+
T Consensus       240 ~~~V~vi~~d~r~v--~-lpekvDIIVSElLGs---fg-~nE-l~pE~Lda~~rfLkp~Gi~IP~  296 (448)
T PF05185_consen  240 GDKVTVIHGDMREV--E-LPEKVDIIVSELLGS---FG-DNE-LSPECLDAADRFLKPDGIMIPS  296 (448)
T ss_dssp             TTTEEEEES-TTTS--C-HSS-EEEEEE---BT---TB-TTT-SHHHHHHHGGGGEEEEEEEESS
T ss_pred             CCeEEEEeCcccCC--C-CCCceeEEEEeccCC---cc-ccc-cCHHHHHHHHhhcCCCCEEeCc
Confidence            46799999998886  2 346999999987643   23 333 5688899999999999999743

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=94.41  E-value=0.064  Score=43.54  Aligned_cols=53  Identities=13%  Similarity=0.312  Sum_probs=40.8

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +.++++...||...+.. ...+||+|=+|.|-.      |     .+|++.+-++++.||++.+-
T Consensus       101 ~~~~~v~~~DAn~ll~~-~~~~fD~IDlDPfGS------p-----~pfldsA~~~v~~gGll~vT  153 (377)
T PF02005_consen  101 DERIEVSNMDANVLLYS-RQERFDVIDLDPFGS------P-----APFLDSALQAVKDGGLLCVT  153 (377)
T ss_dssp             GCCEEEEES-HHHHHCH-STT-EEEEEE--SS-------------HHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEehhhHHHHhhh-ccccCCEEEeCCCCC------c-----cHhHHHHHHHhhcCCEEEEe
Confidence            34889999999999964 568999999998742      2     68999999999999999865

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PLN02672 methionine S-methyltransferase

Probab=94.36  E-value=0.37  Score=44.11  Aligned_cols=91  Identities=14%  Similarity=-0.001  Sum_probs=55.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCCC-C------------------CCccccc-----------HHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRVV-C------------------PAESLFQ-----------ASYFE   55 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~-~------------------~~~~L~t-----------~eF~~   55 (132)
                      .|++++.+|..+.+.. ...+||+||...+- +.... .                  +...|+.           +...+
T Consensus       184 ~rV~f~~sDl~~~~~~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~  262 (1082)
T PLN02672        184 DRVEFYESDLLGYCRD-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVE  262 (1082)
T ss_pred             ccEEEEECchhhhccc-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHH
Confidence            4799999999988754 33479999987641 11000 0                  1223433           45556


Q ss_pred             HHHHhcCCCcEEEEecCCCCCChHHHH-HHHHHHHhhCCCceEeEEec
Q psy4593          56 LMSRALRPGGIVCSQAGTLWYSLDCVG-NTLQHCASVFPRVAYGATCV  102 (132)
Q Consensus        56 ~~~~~L~p~Gil~~~~~~~~~~~~~~~-~~~~~l~~vF~~v~~~~~~~  102 (132)
                      .+.++|+|||++++..+.  .+.+.+. ++++.  ..|..+..|+..+
T Consensus       263 ~a~~~L~pgG~l~lEiG~--~q~~~v~~~l~~~--~gf~~~~~~~~~~  306 (1082)
T PLN02672        263 EGISVIKPMGIMIFNMGG--RPGQAVCERLFER--RGFRITKLWQTKI  306 (1082)
T ss_pred             HHHHhccCCCEEEEEECc--cHHHHHHHHHHHH--CCCCeeEEeeehh
Confidence            677799999999987543  2223233 23332  3488888777653

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=94.33  E-value=0.11  Score=41.03  Aligned_cols=61  Identities=16%  Similarity=0.197  Sum_probs=42.2

Q ss_pred             CeecEEEEcCCCCCCCCCC-CcccccHHHHHHHHHhcCCCcEE--EEecCCCCCChHHHHHHHHHHHhhCCCceEe
Q psy4593          26 NMCGLVVSGAAGPGRVVCP-AESLFQASYFELMSRALRPGGIV--CSQAGTLWYSLDCVGNTLQHCASVFPRVAYG   98 (132)
Q Consensus        26 ~~yDvIi~D~~dp~~~~~~-~~~L~t~eF~~~~~~~L~p~Gil--~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~   98 (132)
                      ++||+||+..+=.   .+. ...-...++++..+++|++||-+  |.|. .+        .....|+++|.+|+..
T Consensus       223 ~kfd~IisNPPfh---~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~-~l--------~y~~~L~~~Fg~v~~l  286 (300)
T COG2813         223 GKFDLIISNPPFH---AGKAVVHSLAQEIIAAAARHLKPGGELWIVANR-HL--------PYEKKLKELFGNVEVL  286 (300)
T ss_pred             ccccEEEeCCCcc---CCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC-CC--------ChHHHHHHhcCCEEEE
Confidence            4899999987522   121 12233569999999999999975  4562 21        2346889999998873

>PRK08317 hypothetical protein; Provisional

Probab=94.32  E-value=0.095  Score=38.29  Aligned_cols=56  Identities=25%  Similarity=0.197  Sum_probs=38.2

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .++++++.+|....- - ...+||+|+....-.    ....   ...+++.++++|+|||.+++-
T Consensus        68 ~~~~~~~~~d~~~~~-~-~~~~~D~v~~~~~~~----~~~~---~~~~l~~~~~~L~~gG~l~~~  123 (241)
T PRK08317         68 GPNVEFVRGDADGLP-F-PDGSFDAVRSDRVLQ----HLED---PARALAEIARVLRPGGRVVVL  123 (241)
T ss_pred             CCceEEEecccccCC-C-CCCCceEEEEechhh----ccCC---HHHHHHHHHHHhcCCcEEEEE
Confidence            456788888875532 2 346899999763211    1111   367899999999999998763

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=94.32  E-value=0.14  Score=37.62  Aligned_cols=55  Identities=15%  Similarity=0.143  Sum_probs=40.1

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++..+|+.++... ...+||+|++.-.-..  ..     -..++++.+++.|+|||.+++.
T Consensus        94 ~~~~~~~d~~~~~~~-~~~~~D~i~~~~~l~~--~~-----~~~~~l~~~~~~L~~gG~l~i~  148 (224)
T TIGR01983        94 KIEYRCTSVEDLAEK-GAKSFDVVTCMEVLEH--VP-----DPQAFIRACAQLLKPGGILFFS  148 (224)
T ss_pred             ceEEEeCCHHHhhcC-CCCCccEEEehhHHHh--CC-----CHHHHHHHHHHhcCCCcEEEEE
Confidence            578888999888765 4578999997532110  11     1257899999999999998764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=94.24  E-value=0.23  Score=38.52  Aligned_cols=71  Identities=11%  Similarity=0.124  Sum_probs=44.2

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH   87 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~   87 (132)
                      ++.++.+|...   . .+++||+|+.+..-.        .  -.+++..+++.|+|||.+++-.    ........+.+.
T Consensus       210 ~~~~~~~~~~~---~-~~~~fDlVvan~~~~--------~--l~~ll~~~~~~LkpgG~li~sg----i~~~~~~~v~~~  271 (288)
T TIGR00406       210 RLQVKLIYLEQ---P-IEGKADVIVANILAE--------V--IKELYPQFSRLVKPGGWLILSG----ILETQAQSVCDA  271 (288)
T ss_pred             ceEEEeccccc---c-cCCCceEEEEecCHH--------H--HHHHHHHHHHHcCCCcEEEEEe----CcHhHHHHHHHH
Confidence            45555555211   1 346899999875311        1  1578999999999999998742    122334566666


Q ss_pred             HHhhCCCce
Q psy4593          88 CASVFPRVA   96 (132)
Q Consensus        88 l~~vF~~v~   96 (132)
                      +++.|.-+.
T Consensus       272 ~~~~f~~~~  280 (288)
T TIGR00406       272 YEQGFTVVE  280 (288)
T ss_pred             HHccCceee
Confidence            666665443

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=94.23  E-value=0.073  Score=39.14  Aligned_cols=51  Identities=20%  Similarity=0.147  Sum_probs=35.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG   72 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~   72 (132)
                      .+++++.+|+.+.+..  .+.||+|+++..-+    ..         -+.+.+.|+|||.+++..+
T Consensus       126 ~~v~~~~~d~~~~~~~--~~~fD~I~~~~~~~----~~---------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        126 HNVSVRHGDGWKGWPA--YAPFDRILVTAAAP----EI---------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CceEEEECCcccCCCc--CCCcCEEEEccCch----hh---------hHHHHHhcCCCcEEEEEEc
Confidence            3588899998654332  46899999986322    11         2456788999999998643

>KOG1661|consensus

Probab=94.14  E-value=0.076  Score=40.07  Aligned_cols=54  Identities=15%  Similarity=0.084  Sum_probs=40.5

Q ss_pred             CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      -|+.+++.++++||+.--..  ..+||.|.+.+..+    ..         -+.+.+-|+++|-+++..
T Consensus       140 ~~~~~~l~ivvGDgr~g~~e--~a~YDaIhvGAaa~----~~---------pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  140 KLKRGELSIVVGDGRKGYAE--QAPYDAIHVGAAAS----EL---------PQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             hhccCceEEEeCCccccCCc--cCCcceEEEccCcc----cc---------HHHHHHhhccCCeEEEee
Confidence            46789999999999985444  68999999987655    12         345556688888888754

>PHA03411 putative methyltransferase; Provisional

Probab=94.11  E-value=0.19  Score=39.22  Aligned_cols=78  Identities=14%  Similarity=0.123  Sum_probs=49.3

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC--cc--cc-----------cHHHHHHHHHhcCCCcEEEE-e
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA--ES--LF-----------QASYFELMSRALRPGGIVCS-Q   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~--~~--L~-----------t~eF~~~~~~~L~p~Gil~~-~   70 (132)
                      ++++++.+|++++...   .+||+||.+.+=..  ....  ..  -+           =.+|+......|+|+|.+.. +
T Consensus       109 ~~v~~v~~D~~e~~~~---~kFDlIIsNPPF~~--l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y  183 (279)
T PHA03411        109 PEAEWITSDVFEFESN---EKFDVVISNPPFGK--INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY  183 (279)
T ss_pred             cCCEEEECchhhhccc---CCCcEEEEcCCccc--cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence            5789999999998633   58999999764211  1110  11  11           25788999999999997654 4


Q ss_pred             cCCCCCChHHHHHHHHHHH
Q psy4593          71 AGTLWYSLDCVGNTLQHCA   89 (132)
Q Consensus        71 ~~~~~~~~~~~~~~~~~l~   89 (132)
                      .+.+.++.++-..-++++.
T Consensus       184 ss~~~y~~sl~~~~y~~~l  202 (279)
T PHA03411        184 SGRPYYDGTMKSNKYLKWS  202 (279)
T ss_pred             eccccccccCCHHHHHHHH
Confidence            5556665544444443333

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=94.07  E-value=0.087  Score=40.28  Aligned_cols=35  Identities=20%  Similarity=0.471  Sum_probs=27.8

Q ss_pred             CCeecEEEE-c----CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593          25 KNMCGLVVS-G----AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus        25 ~~~yDvIi~-D----~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .++||||++ +    +.||            ..|.+.|.+.++|||++..-.
T Consensus       122 ~~~FDvV~cmEVlEHv~dp------------~~~~~~c~~lvkP~G~lf~ST  161 (243)
T COG2227         122 GGQFDVVTCMEVLEHVPDP------------ESFLRACAKLVKPGGILFLST  161 (243)
T ss_pred             CCCccEEEEhhHHHccCCH------------HHHHHHHHHHcCCCcEEEEec
Confidence            379999995 3    3333            559999999999999998754

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=94.05  E-value=0.11  Score=38.04  Aligned_cols=53  Identities=17%  Similarity=0.170  Sum_probs=34.6

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVC   68 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~   68 (132)
                      +++.++.|..++  . .+++||+|+.-..-.   ...+  --...+++.+++.|+|||.++
T Consensus        79 ~v~~~~~d~~~~--~-~~~~fD~I~~~~~~~---~~~~--~~~~~~l~~i~~~LkpgG~~~  131 (197)
T PRK11207         79 NLHTAVVDLNNL--T-FDGEYDFILSTVVLM---FLEA--KTIPGLIANMQRCTKPGGYNL  131 (197)
T ss_pred             cceEEecChhhC--C-cCCCcCEEEEecchh---hCCH--HHHHHHHHHHHHHcCCCcEEE
Confidence            477888887654  2 235799998642211   0111  123689999999999999854

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=94.05  E-value=0.15  Score=37.86  Aligned_cols=55  Identities=13%  Similarity=0.158  Sum_probs=39.3

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++++..|..++... ..++||+|+....=.    ..+   -..++++.+.+.|+|||.+++.
T Consensus        96 ~~~~~~~~~~~~~~~-~~~~fD~Ii~~~~l~----~~~---~~~~~l~~~~~~L~~gG~l~v~  150 (233)
T PRK05134         96 KIDYRQTTAEELAAE-HPGQFDVVTCMEMLE----HVP---DPASFVRACAKLVKPGGLVFFS  150 (233)
T ss_pred             ceEEEecCHHHhhhh-cCCCccEEEEhhHhh----ccC---CHHHHHHHHHHHcCCCcEEEEE
Confidence            567788888887655 457899999753211    111   1257899999999999999875

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=94.02  E-value=0.05  Score=40.42  Aligned_cols=48  Identities=15%  Similarity=0.305  Sum_probs=34.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVC   68 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~   68 (132)
                      .++.++.+|+++++.   ...+|-||.+++..           +.+|+..+.++++++|++.
T Consensus       152 ~~i~~~~~D~~~~~~---~~~~drvim~lp~~-----------~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  152 NRIEVINGDAREFLP---EGKFDRVIMNLPES-----------SLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             TTEEEEES-GGG------TT-EEEEEE--TSS-----------GGGGHHHHHHHEEEEEEEE
T ss_pred             CeEEEEcCCHHHhcC---ccccCEEEECChHH-----------HHHHHHHHHHHhcCCcEEE
Confidence            578899999999987   47899999988432           4689999999999999974

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=93.86  E-value=0.22  Score=37.44  Aligned_cols=53  Identities=19%  Similarity=0.149  Sum_probs=37.1

Q ss_pred             cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++.+|+... .- .+++||+|+....-.+  ..   .  -.++++.+++.|+|||.++..
T Consensus        87 ~~~~~~d~~~~-~~-~~~~fD~V~s~~~l~~--~~---d--~~~~l~~~~~~Lk~gG~l~~~  139 (251)
T PRK10258         87 DHYLAGDIESL-PL-ATATFDLAWSNLAVQW--CG---N--LSTALRELYRVVRPGGVVAFT  139 (251)
T ss_pred             CCEEEcCcccC-cC-CCCcEEEEEECchhhh--cC---C--HHHHHHHHHHHcCCCeEEEEE
Confidence            45678887553 22 4568999998654221  11   1  268899999999999999875

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=93.84  E-value=0.083  Score=43.55  Aligned_cols=59  Identities=17%  Similarity=0.027  Sum_probs=39.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+...-....+++||+|++...-.+  . +...  -.++++.+++.|+|||++++.
T Consensus        83 ~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~--l-~~~~--~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336         83 KNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY--L-SDKE--VENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             CceEEEEecccccccCCCCCCEEEEehhhhHHh--C-CHHH--HHHHHHHHHHhcCCCeEEEEE
Confidence            578889999864211114578999998653210  0 1100  268999999999999999874

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=93.76  E-value=0.17  Score=37.19  Aligned_cols=55  Identities=18%  Similarity=0.045  Sum_probs=38.1

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      +++++++.+|..... . ....||+|+....-.    ..+   -..++++.+.+.|+|||.+++
T Consensus       102 ~~~~~~~~~d~~~~~-~-~~~~~D~I~~~~~l~----~~~---~~~~~l~~~~~~L~~gG~li~  156 (239)
T PRK00216        102 SGNVEFVQGDAEALP-F-PDNSFDAVTIAFGLR----NVP---DIDKALREMYRVLKPGGRLVI  156 (239)
T ss_pred             ccCeEEEecccccCC-C-CCCCccEEEEecccc----cCC---CHHHHHHHHHHhccCCcEEEE
Confidence            356888888877643 2 356899998743211    111   136889999999999998875

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=93.68  E-value=0.053  Score=40.50  Aligned_cols=50  Identities=18%  Similarity=0.159  Sum_probs=34.3

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++++.+||..-+..  ...||.|++.+.-+    ..+     .    ...+.|++||.+++..
T Consensus       123 ~nv~~~~gdg~~g~~~--~apfD~I~v~~a~~----~ip-----~----~l~~qL~~gGrLV~pi  172 (209)
T PF01135_consen  123 DNVEVVVGDGSEGWPE--EAPFDRIIVTAAVP----EIP-----E----ALLEQLKPGGRLVAPI  172 (209)
T ss_dssp             HSEEEEES-GGGTTGG--G-SEEEEEESSBBS----S-------H----HHHHTEEEEEEEEEEE
T ss_pred             CceeEEEcchhhcccc--CCCcCEEEEeeccc----hHH-----H----HHHHhcCCCcEEEEEE
Confidence            4789999999876654  45799999987533    222     2    2444599999999864

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00095 RNA methyltransferase, RsmD family

Probab=93.57  E-value=0.26  Score=36.05  Aligned_cols=57  Identities=7%  Similarity=-0.041  Sum_probs=38.6

Q ss_pred             CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH--hcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR--ALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~--~L~p~Gil~~~~   71 (132)
                      .+++++.+|+.++++..  ....||+|+.|.+=.     .  . +..+-++.+.+  .|+++|+++.-.
T Consensus        99 ~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~-----~--~-~~~~~l~~l~~~~~l~~~~iiv~E~  159 (189)
T TIGR00095        99 EQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFF-----N--G-ALQALLELCENNWILEDTVLIVVEE  159 (189)
T ss_pred             ccEEEEehhHHHHHHHhhccCCCceEEEECcCCC-----C--C-cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            47899999999998642  123589999997422     1  1 23444555543  699999999753

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK06922 hypothetical protein; Provisional

Probab=93.53  E-value=0.54  Score=40.93  Aligned_cols=65  Identities=12%  Similarity=0.062  Sum_probs=40.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCC--C---CC-CcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRV--V---CP-AESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~--~---~~-~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++++.+|+...-....+++||+|+....-.++.  .   +. -..-.-..+++.++++|+|||.+++.-
T Consensus       467 ~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        467 RSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             CCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            46788889988732112356899998643110000  0   00 011134789999999999999999864

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=93.38  E-value=0.25  Score=37.65  Aligned_cols=72  Identities=11%  Similarity=0.065  Sum_probs=50.9

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      |+++...+|.+.|  + .+...|+|+..+.=.|    .+.+   .+.|..+...|+|||++++|--. +.+.+.++.+..
T Consensus        75 p~~~f~~aDl~~w--~-p~~~~dllfaNAvlqW----lpdH---~~ll~rL~~~L~Pgg~LAVQmPd-N~depsH~~mr~  143 (257)
T COG4106          75 PDATFEEADLRTW--K-PEQPTDLLFANAVLQW----LPDH---PELLPRLVSQLAPGGVLAVQMPD-NLDEPSHRLMRE  143 (257)
T ss_pred             CCCceecccHhhc--C-CCCccchhhhhhhhhh----cccc---HHHHHHHHHhhCCCceEEEECCC-ccCchhHHHHHH
Confidence            6788889999998  4 5578999998865433    2223   56788899999999999998522 133444555655


Q ss_pred             HHH
Q psy4593          87 HCA   89 (132)
Q Consensus        87 ~l~   89 (132)
                      +.+
T Consensus       144 ~A~  146 (257)
T COG4106         144 TAD  146 (257)
T ss_pred             HHh
Confidence            554

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=93.37  E-value=0.073  Score=40.80  Aligned_cols=49  Identities=18%  Similarity=0.230  Sum_probs=33.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++++|+.+. .- .+++||+|+.- +.|             .+++.+++.|+|||.++.-.
T Consensus       133 ~~~~~~~~d~~~l-p~-~~~sfD~I~~~-~~~-------------~~~~e~~rvLkpgG~li~~~  181 (272)
T PRK11088        133 PQVTFCVASSHRL-PF-ADQSLDAIIRI-YAP-------------CKAEELARVVKPGGIVITVT  181 (272)
T ss_pred             CCCeEEEeecccC-CC-cCCceeEEEEe-cCC-------------CCHHHHHhhccCCCEEEEEe
Confidence            5677788886653 21 35689999852 212             23577889999999998753

>TIGR00740 methyltransferase, putative

Probab=93.35  E-value=0.16  Score=37.95  Aligned_cols=55  Identities=16%  Similarity=0.177  Sum_probs=36.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++++.+|..++-    ...+|+|++...-.+   ..+.  --.++++.++++|+|||.+++.
T Consensus       106 ~~v~~~~~d~~~~~----~~~~d~v~~~~~l~~---~~~~--~~~~~l~~i~~~LkpgG~l~i~  160 (239)
T TIGR00740       106 IPVEILCNDIRHVE----IKNASMVILNFTLQF---LPPE--DRIALLTKIYEGLNPNGVLVLS  160 (239)
T ss_pred             CCeEEEECChhhCC----CCCCCEEeeecchhh---CCHH--HHHHHHHHHHHhcCCCeEEEEe
Confidence            46788888887642    234787775432221   1111  1267999999999999999875

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=93.31  E-value=0.17  Score=41.66  Aligned_cols=55  Identities=22%  Similarity=0.254  Sum_probs=38.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++++.+|..... - .+++||+|++-..-.+  .  +.   ...+++.+++.|+|||.+++.
T Consensus       314 ~~v~~~~~d~~~~~-~-~~~~fD~I~s~~~l~h--~--~d---~~~~l~~~~r~LkpgG~l~i~  368 (475)
T PLN02336        314 CSVEFEVADCTKKT-Y-PDNSFDVIYSRDTILH--I--QD---KPALFRSFFKWLKPGGKVLIS  368 (475)
T ss_pred             CceEEEEcCcccCC-C-CCCCEEEEEECCcccc--c--CC---HHHHHHHHHHHcCCCeEEEEE
Confidence            46888889876521 1 3468999997422111  1  11   258899999999999999864

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=93.27  E-value=0.61  Score=39.22  Aligned_cols=61  Identities=16%  Similarity=0.164  Sum_probs=38.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCC----------CCCCcccc----c----HHHHHHHHHhcCCCcEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRV----------VCPAESLF----Q----ASYFELMSRALRPGGIV   67 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~----------~~~~~~L~----t----~eF~~~~~~~L~p~Gil   67 (132)
                      .+++++.+|..+.+.   .++||+|+++.+- +...          ..|...|+    .    ..+++.+.+.|+|||.+
T Consensus       189 ~~v~~~~~D~~~~~~---~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l  265 (506)
T PRK01544        189 DRIQIIHSNWFENIE---KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKI  265 (506)
T ss_pred             cceeeeecchhhhCc---CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEE
Confidence            578999999877553   3589999998641 1000          01111233    2    33456778899999999


Q ss_pred             EEe
Q psy4593          68 CSQ   70 (132)
Q Consensus        68 ~~~   70 (132)
                      ++-
T Consensus       266 ~lE  268 (506)
T PRK01544        266 ILE  268 (506)
T ss_pred             EEE
Confidence            874

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=93.20  E-value=0.12  Score=39.13  Aligned_cols=55  Identities=20%  Similarity=0.247  Sum_probs=35.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++++.+|..+..    ...+|+|++-..-..  ..+.   --..+++.++++|+|||.+++.
T Consensus       109 ~~v~~~~~d~~~~~----~~~~D~vv~~~~l~~--l~~~---~~~~~l~~i~~~LkpGG~l~l~  163 (247)
T PRK15451        109 TPVDVIEGDIRDIA----IENASMVVLNFTLQF--LEPS---ERQALLDKIYQGLNPGGALVLS  163 (247)
T ss_pred             CCeEEEeCChhhCC----CCCCCEEehhhHHHh--CCHH---HHHHHHHHHHHhcCCCCEEEEE
Confidence            46788888866531    234888775432110  1111   1367899999999999999874

>KOG2899|consensus

Probab=93.08  E-value=0.11  Score=40.06  Aligned_cols=45  Identities=18%  Similarity=0.338  Sum_probs=30.9

Q ss_pred             CCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593          24 VKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus        24 ~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ...+||+|++=+-.-|.-. -....|  ..||+.+.+.|.|||++++-
T Consensus       163 ~~~~fDiIlcLSiTkWIHLNwgD~GL--~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  163 IQPEFDIILCLSITKWIHLNWGDDGL--RRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             ccccccEEEEEEeeeeEecccccHHH--HHHHHHHHHhhCcCcEEEEc
Confidence            4579999996433333100 112233  78999999999999999983

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=92.97  E-value=0.27  Score=38.94  Aligned_cols=54  Identities=13%  Similarity=0.065  Sum_probs=37.4

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++++++..|..+. ..  .++||+|++ .+..-   ..     --.++++.+++.|+|||.+++.
T Consensus       171 ~~~i~~~~~d~e~l-p~--~~~FD~V~s~~vl~H---~~-----dp~~~L~~l~~~LkpGG~lvl~  225 (322)
T PRK15068        171 DQRAHLLPLGIEQL-PA--LKAFDTVFSMGVLYH---RR-----SPLDHLKQLKDQLVPGGELVLE  225 (322)
T ss_pred             CCCeEEEeCCHHHC-CC--cCCcCEEEECChhhc---cC-----CHHHHHHHHHHhcCCCcEEEEE
Confidence            46788888887653 22  568999996 22111   10     1257899999999999999864

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=92.79  E-value=0.17  Score=37.81  Aligned_cols=58  Identities=17%  Similarity=0.087  Sum_probs=36.3

Q ss_pred             CCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593           5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVC   68 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~   68 (132)
                      ...+++++++|..++-.. ...+||.|+--..=    ...+.. --..+++.+++.|+|||.+.
T Consensus        92 ~~~~v~~~~~D~~~~~~~-~~~~fD~i~D~~~~----~~l~~~-~R~~~~~~l~~lLkpgG~~l  149 (213)
T TIGR03840        92 RAGNIEIFCGDFFALTAA-DLGPVDAVYDRAAL----IALPEE-MRQRYAAHLLALLPPGARQL  149 (213)
T ss_pred             ecCceEEEEccCCCCCcc-cCCCcCEEEechhh----ccCCHH-HHHHHHHHHHHHcCCCCeEE
Confidence            356788899998775322 23568887532110    112212 24568999999999999643

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=92.70  E-value=1  Score=34.62  Aligned_cols=83  Identities=14%  Similarity=0.139  Sum_probs=48.8

Q ss_pred             CCCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcC--CCcEEEEecCCCCCChHHH
Q psy4593           6 GYPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALR--PGGIVCSQAGTLWYSLDCV   81 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~--p~Gil~~~~~~~~~~~~~~   81 (132)
                      +++++|+..||.+-+...  ...+=-+|++|.+     .......  ...-+.+.++++  +.|++++|-  |..+....
T Consensus       102 ~~~v~v~~~DG~~~l~allPP~~rRglVLIDPp-----YE~~~dy--~~v~~~l~~a~kR~~~G~~~iWY--Pi~~~~~~  172 (245)
T PF04378_consen  102 DRRVRVHHRDGYEGLKALLPPPERRGLVLIDPP-----YEQKDDY--QRVVDALAKALKRWPTGVYAIWY--PIKDRERV  172 (245)
T ss_dssp             TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE----------STTHH--HHHHHHHHHHHHH-TTSEEEEEE--EESSHHHH
T ss_pred             CCccEEEeCchhhhhhhhCCCCCCCeEEEECCC-----CCCchHH--HHHHHHHHHHHHhcCCcEEEEEe--ecccHHHH
Confidence            579999999999998774  4567889999963     1111110  112233444444  899999985  55567778


Q ss_pred             HHHHHHHHhh-CCCceE
Q psy4593          82 GNTLQHCASV-FPRVAY   97 (132)
Q Consensus        82 ~~~~~~l~~v-F~~v~~   97 (132)
                      +.+.+.|++. .+.+..
T Consensus       173 ~~~~~~l~~~~~~~~l~  189 (245)
T PF04378_consen  173 DRFLRALKALGIKKVLR  189 (245)
T ss_dssp             HHHHHHHHHH-SSE-EE
T ss_pred             HHHHHHHHhcCCCCeEE
Confidence            8899999865 555433

; PDB: 2OO3_A.

>KOG0780|consensus

Probab=92.67  E-value=0.31  Score=40.05  Aligned_cols=87  Identities=14%  Similarity=0.185  Sum_probs=48.7

Q ss_pred             CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhh--CCCceEeEEec
Q psy4593          25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV--FPRVAYGATCV  102 (132)
Q Consensus        25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~v--F~~v~~~~~~~  102 (132)
                      ++.||+||+|..-.   .-...+||++  +..|+++++|+-++.+--.+.-   .......+++++.  +..|-+-...-
T Consensus       181 ke~fdvIIvDTSGR---h~qe~sLfeE--M~~v~~ai~Pd~vi~VmDasiG---Qaae~Qa~aFk~~vdvg~vIlTKlDG  252 (483)
T KOG0780|consen  181 KENFDVIIVDTSGR---HKQEASLFEE--MKQVSKAIKPDEIIFVMDASIG---QAAEAQARAFKETVDVGAVILTKLDG  252 (483)
T ss_pred             hcCCcEEEEeCCCc---hhhhHHHHHH--HHHHHhhcCCCeEEEEEecccc---HhHHHHHHHHHHhhccceEEEEeccc
Confidence            57899999998755   3445566543  6789999999999876422221   1123344555543  34443322233


Q ss_pred             cCcCCCceeEEEeecCC
Q psy4593         103 PTYPSGQIGFVLGSQLL  119 (132)
Q Consensus       103 p~~~~~~~~f~~as~~~  119 (132)
                      -+-+||...-+-|++.|
T Consensus       253 hakGGgAlSaVaaTksP  269 (483)
T KOG0780|consen  253 HAKGGGALSAVAATKSP  269 (483)
T ss_pred             CCCCCceeeehhhhCCC
Confidence            33444444444444443

>PRK10742 putative methyltransferase; Provisional

Probab=92.48  E-value=0.13  Score=39.58  Aligned_cols=31  Identities=6%  Similarity=-0.039  Sum_probs=26.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGP   38 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp   38 (132)
                      .|++++.+|+.+||++ ....||||++|..=|
T Consensus       145 ~ri~l~~~da~~~L~~-~~~~fDVVYlDPMfp  175 (250)
T PRK10742        145 ERLQLIHASSLTALTD-ITPRPQVVYLDPMFP  175 (250)
T ss_pred             ceEEEEeCcHHHHHhh-CCCCCcEEEECCCCC
Confidence            5799999999999998 556899999997544

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=92.43  E-value=0.32  Score=38.68  Aligned_cols=50  Identities=14%  Similarity=-0.055  Sum_probs=35.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      +++.++.+|+.+.+..  ...||+|+++..-+    .         ....+.+.|+|||.+++..
T Consensus       131 ~nV~~i~gD~~~~~~~--~~~fD~Ii~~~g~~----~---------ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        131 ENVIFVCGDGYYGVPE--FAPYDVIFVTVGVD----E---------VPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             CcEEEEeCChhhcccc--cCCccEEEECCchH----H---------hHHHHHHhcCCCCEEEEEe
Confidence            4688999999887655  35799999985322    1         1234567899999988753

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=92.38  E-value=0.26  Score=40.11  Aligned_cols=59  Identities=15%  Similarity=0.110  Sum_probs=47.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEE-EcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVV-SGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi-~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .|+++|.++-.++|++..++++|..+ +|..|=   +.+  .. -.+-.+.+.+.++|||.++..+
T Consensus       275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dw---m~~--~~-~~~~~~~l~~~~~pgaRV~~Rs  334 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDW---MDP--EQ-LNEEWQELARTARPGARVLWRS  334 (380)
T ss_pred             CeEEEEeccHHHHHHhCCCCCeeEEEecchhhh---CCH--HH-HHHHHHHHHHHhCCCCEEEEee
Confidence            78999999999999986688999877 698875   333  22 2566788999999999999864

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=92.33  E-value=0.81  Score=34.65  Aligned_cols=70  Identities=14%  Similarity=0.173  Sum_probs=43.7

Q ss_pred             eecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhh-CCCceEeEEeccCc
Q psy4593          27 MCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV-FPRVAYGATCVPTY  105 (132)
Q Consensus        27 ~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~v-F~~v~~~~~~~p~~  105 (132)
                      +||+|+.+....        .  -..+++.+.+.|+|||.+++....    ......+.+.+++. |.-+....      
T Consensus       179 ~fD~Vvani~~~--------~--~~~l~~~~~~~LkpgG~lilsgi~----~~~~~~v~~~l~~~Gf~~~~~~~------  238 (250)
T PRK00517        179 KADVIVANILAN--------P--LLELAPDLARLLKPGGRLILSGIL----EEQADEVLEAYEEAGFTLDEVLE------  238 (250)
T ss_pred             CcCEEEEcCcHH--------H--HHHHHHHHHHhcCCCcEEEEEECc----HhhHHHHHHHHHHCCCEEEEEEE------
Confidence            699998765321        1  256789999999999999985311    22345666677665 55443321      


Q ss_pred             CCCceeEEEeec
Q psy4593         106 PSGQIGFVLGSQ  117 (132)
Q Consensus       106 ~~~~~~f~~as~  117 (132)
                       .+.|..+++.+
T Consensus       239 -~~~W~~~~~~~  249 (250)
T PRK00517        239 -RGEWVALVGKK  249 (250)
T ss_pred             -eCCEEEEEEEe
Confidence             24576666543

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=92.21  E-value=1  Score=37.17  Aligned_cols=85  Identities=16%  Similarity=0.020  Sum_probs=47.3

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCCC---------CCCcccc--------cHHHHHHHHHhcCCCcEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRVV---------CPAESLF--------QASYFELMSRALRPGGIVC   68 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~---------~~~~~L~--------t~eF~~~~~~~L~p~Gil~   68 (132)
                      .+++++.+|..+.... ...+||+|+++.+- +....         .|...|+        -+.+.+.+.++|+|||.++
T Consensus       300 ~rV~fi~gDl~e~~l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li  378 (423)
T PRK14966        300 ARVEFAHGSWFDTDMP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL  378 (423)
T ss_pred             CcEEEEEcchhccccc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence            3788999997664222 23579999998742 11000         0111122        2355566678999999988


Q ss_pred             EecCCCCCChHHHHHHHHHHHh-hCCCceE
Q psy4593          69 SQAGTLWYSLDCVGNTLQHCAS-VFPRVAY   97 (132)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~l~~-vF~~v~~   97 (132)
                      +-.+.  .+   ...+.+.+++ .|..+..
T Consensus       379 lEiG~--~Q---~e~V~~ll~~~Gf~~v~v  403 (423)
T PRK14966        379 LEHGF--DQ---GAAVRGVLAENGFSGVET  403 (423)
T ss_pred             EEECc--cH---HHHHHHHHHHCCCcEEEE
Confidence            64322  22   2344444444 3666555

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=91.84  E-value=0.098  Score=37.45  Aligned_cols=84  Identities=15%  Similarity=0.116  Sum_probs=43.4

Q ss_pred             CeecEEEEcCCCCCCCCCC-----CcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEE
Q psy4593          26 NMCGLVVSGAAGPGRVVCP-----AESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGAT  100 (132)
Q Consensus        26 ~~yDvIi~D~~dp~~~~~~-----~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~  100 (132)
                      +++|+|+.|..-...+...     ...| ...-+..+.+.|+|||.+++-.   +..... ..++..++..|..|.++..
T Consensus        90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l-~~~~l~~a~~~L~~gG~~v~K~---~~~~~~-~~~~~~l~~~F~~v~~~Kp  164 (181)
T PF01728_consen   90 EKFDLVLSDMAPNVSGDRNIDEFISIRL-ILSQLLLALELLKPGGTFVIKV---FKGPEI-EELIYLLKRCFSKVKIVKP  164 (181)
T ss_dssp             CSESEEEE-------SSHHSSHHHHHHH-HHHHHHHHHHHHCTTEEEEEEE---SSSTTS-HHHHHHHHHHHHHEEEEE-
T ss_pred             cCcceeccccccCCCCchhhHHHHHHHH-HHHHHHHHHhhhcCCCEEEEEe---ccCccH-HHHHHHHHhCCeEEEEEEC
Confidence            6999999998432100100     1122 2223345667899999888753   111122 3778888889988887643


Q ss_pred             eccCcCCCceeEEEe
Q psy4593         101 CVPTYPSGQIGFVLG  115 (132)
Q Consensus       101 ~~p~~~~~~~~f~~a  115 (132)
                      .. +.+.+.-.+++|
T Consensus       165 ~~-sr~~s~E~Ylv~  178 (181)
T PF01728_consen  165 PS-SRSESSEEYLVC  178 (181)
T ss_dssp             TT-SBTTCBEEEEES
T ss_pred             cC-CCCCccEEEEEE
Confidence            22 223334445554

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=91.67  E-value=0.12  Score=39.67  Aligned_cols=55  Identities=16%  Similarity=0.084  Sum_probs=35.4

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++....|..+.- - ..++||+|++ .+...   ..   .--....++.++++|+|||++++-
T Consensus       186 ~V~F~~~dl~~~~-~-~~~~fD~I~crnvl~y---f~---~~~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      186 RVRFAKHNLLAES-P-PLGDFDLIFCRNVLIY---FD---EPTQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             cCEEeeccCCCCC-C-ccCCCCEEEechhHHh---CC---HHHHHHHHHHHHHHhCCCeEEEEE
Confidence            5666666654421 1 2568999997 33211   11   111357899999999999999985

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR00452 methyltransferase, putative

Probab=91.61  E-value=0.48  Score=37.55  Aligned_cols=55  Identities=7%  Similarity=-0.090  Sum_probs=35.3

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +.++++...|..+ +..  ..+||+|++-..-.+  .  .   --.++++.+++.|+|||.+++.
T Consensus       170 ~~~v~~~~~~ie~-lp~--~~~FD~V~s~gvL~H--~--~---dp~~~L~el~r~LkpGG~Lvle  224 (314)
T TIGR00452       170 DKRAILEPLGIEQ-LHE--LYAFDTVFSMGVLYH--R--K---SPLEHLKQLKHQLVIKGELVLE  224 (314)
T ss_pred             CCCeEEEECCHHH-CCC--CCCcCEEEEcchhhc--c--C---CHHHHHHHHHHhcCCCCEEEEE
Confidence            3566666666544 222  347999986432111  1  1   1157899999999999999864

Known examples to date are restricted to the proteobacteria.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=91.55  E-value=0.097  Score=35.94  Aligned_cols=40  Identities=18%  Similarity=0.326  Sum_probs=29.8

Q ss_pred             CCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593          24 VKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus        24 ~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++||+|++- +..-     .+   --.++++.+++.|+|||++++..
T Consensus        75 ~~~~fD~i~~~~~l~~-----~~---d~~~~l~~l~~~LkpgG~l~~~~  115 (161)
T PF13489_consen   75 PDGSFDLIICNDVLEH-----LP---DPEEFLKELSRLLKPGGYLVISD  115 (161)
T ss_dssp             HSSSEEEEEEESSGGG-----SS---HHHHHHHHHHHCEEEEEEEEEEE
T ss_pred             cccchhhHhhHHHHhh-----cc---cHHHHHHHHHHhcCCCCEEEEEE
Confidence            35799999964 3322     11   14789999999999999999764

...

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=91.54  E-value=0.34  Score=39.34  Aligned_cols=53  Identities=32%  Similarity=0.483  Sum_probs=35.6

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++..+|..+.     +++||+|+. ..+..   .+.   -.-.++++.+++.|+|||.+++..
T Consensus       214 ~v~~~~~D~~~l-----~~~fD~Ivs~~~~eh---vg~---~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        214 PVEIRLQDYRDL-----NGQFDRIVSVGMFEH---VGP---KNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             eEEEEECchhhc-----CCCCCEEEEeCchhh---CCh---HHHHHHHHHHHHHcCCCcEEEEEE
Confidence            467777886542     357999974 33221   111   112578999999999999998863

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=91.08  E-value=0.37  Score=37.34  Aligned_cols=53  Identities=11%  Similarity=0.066  Sum_probs=34.1

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ....+++-.|-  |- + .+.+||+|.+ .+=|..   .-|     ...++.++++|+|+|++++-
T Consensus       134 ~kg~~vl~~~~--w~-~-~~~~fDvIscLNvLDRc---~~P-----~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  134 KKGFTVLDIDD--WQ-Q-TDFKFDVISCLNVLDRC---DRP-----LTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             hCCCeEEehhh--hh-c-cCCceEEEeehhhhhcc---CCH-----HHHHHHHHHHhCCCCEEEEE
Confidence            34455554444  32 3 4678999984 444431   122     45689999999999998653

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=90.85  E-value=0.2  Score=38.93  Aligned_cols=89  Identities=15%  Similarity=0.194  Sum_probs=57.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC---CCC------------cccccHHHHHHHHHhc----CCCcEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV---CPA------------ESLFQASYFELMSRAL----RPGGIV   67 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~---~~~------------~~L~t~eF~~~~~~~L----~p~Gil   67 (132)
                      .++.++..|+.++........||.|++|++=.+.+.   .|.            -.-...+.++.+.+.|    +|||.+
T Consensus       136 ~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~l  215 (283)
T PF01189_consen  136 FNVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRL  215 (283)
T ss_dssp             SSEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEE
T ss_pred             ceEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeE
Confidence            456777799999865423347999999986332111   111            0123567788999999    999999


Q ss_pred             EEecCCCCCChHHHHHHHHHHHhhCCCceE
Q psy4593          68 CSQAGTLWYSLDCVGNTLQHCASVFPRVAY   97 (132)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~   97 (132)
                      +--+++..  .++-..+++.+-+.+++...
T Consensus       216 vYsTCS~~--~eENE~vV~~fl~~~~~~~l  243 (283)
T PF01189_consen  216 VYSTCSLS--PEENEEVVEKFLKRHPDFEL  243 (283)
T ss_dssp             EEEESHHH--GGGTHHHHHHHHHHSTSEEE
T ss_pred             EEEeccHH--HHHHHHHHHHHHHhCCCcEE
Confidence            86554432  23345566666667776655

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>TIGR00477 tehB tellurite resistance protein TehB

Probab=90.77  E-value=0.53  Score=34.30  Aligned_cols=51  Identities=16%  Similarity=0.073  Sum_probs=31.1

Q ss_pred             cEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593           9 VLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVC   68 (132)
Q Consensus         9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~   68 (132)
                      ++....|...+  . .+++||+|+.-. +.-   .. .  -...++++.+++.|+|||.++
T Consensus        79 v~~~~~d~~~~--~-~~~~fD~I~~~~~~~~---~~-~--~~~~~~l~~~~~~LkpgG~ll  130 (195)
T TIGR00477        79 LRTDAYDINAA--A-LNEDYDFIFSTVVFMF---LQ-A--GRVPEIIANMQAHTRPGGYNL  130 (195)
T ss_pred             ceeEeccchhc--c-ccCCCCEEEEeccccc---CC-H--HHHHHHHHHHHHHhCCCcEEE
Confidence            55566665432  1 235799998642 211   11 1  123688999999999999844

Part of a tellurite-reducing operon tehA and tehB

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=90.75  E-value=0.38  Score=37.17  Aligned_cols=54  Identities=13%  Similarity=0.104  Sum_probs=34.6

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ++++...|....  . .+++||+|+.-..-..  . .+.  --.++++.+++.|+|||++++
T Consensus       168 ~v~~~~~D~~~~--~-~~~~fD~I~~~~vl~~--l-~~~--~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        168 NIRTGLYDINSA--S-IQEEYDFILSTVVLMF--L-NRE--RIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             ceEEEEechhcc--c-ccCCccEEEEcchhhh--C-CHH--HHHHHHHHHHHhcCCCcEEEE
Confidence            566777776553  1 2468999986543110  1 111  235789999999999998543

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=90.65  E-value=1.6  Score=33.79  Aligned_cols=82  Identities=13%  Similarity=0.067  Sum_probs=55.3

Q ss_pred             CCCCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcC--CCcEEEEecCCCCCChHH
Q psy4593           5 RGYPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALR--PGGIVCSQAGTLWYSLDC   80 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~--p~Gil~~~~~~~~~~~~~   80 (132)
                      .|.|+++..+||..-++..  .+++=-+|++|.+     .......  ....+.+++.++  ++|++++|-  |-.+...
T Consensus       132 ~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPP-----fE~~~eY--~rvv~~l~~~~kRf~~g~yaiWY--Pik~r~~  202 (279)
T COG2961         132 GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPP-----FELKDEY--QRVVEALAEAYKRFATGTYAIWY--PIKDRRQ  202 (279)
T ss_pred             CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCC-----cccccHH--HHHHHHHHHHHHhhcCceEEEEE--eecchHH
Confidence            4789999999999999874  4577899999973     2222110  111222333333  799999985  4456778


Q ss_pred             HHHHHHHHHhh-CCCc
Q psy4593          81 VGNTLQHCASV-FPRV   95 (132)
Q Consensus        81 ~~~~~~~l~~v-F~~v   95 (132)
                      ++.+.+.+++. .+.+
T Consensus       203 ~~~f~~~L~~~~i~ki  218 (279)
T COG2961         203 IRRFLRALEALGIRKI  218 (279)
T ss_pred             HHHHHHHHhhcCccce
Confidence            89999999876 4443

>KOG1122|consensus

Probab=90.35  E-value=1.9  Score=35.71  Aligned_cols=90  Identities=12%  Similarity=0.141  Sum_probs=61.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC-CCCc--------------ccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV-CPAE--------------SLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~-~~~~--------------~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+..+.+.||++|-.+....+||=|++|++=...+. .-++              .=+.++.+..+.+.+++||++|--+
T Consensus       292 ~ntiv~n~D~~ef~~~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  292 TNTIVSNYDGREFPEKEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             CceEEEccCcccccccccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence            345677889998854423448999999996432111 1111              1235667788889999999998766


Q ss_pred             CCCCCChHHHHHHHHHHHhhCCCceEe
Q psy4593          72 GTLWYSLDCVGNTLQHCASVFPRVAYG   98 (132)
Q Consensus        72 ~~~~~~~~~~~~~~~~l~~vF~~v~~~   98 (132)
                      ++.  ..+.-..+++-..+.||++.+.
T Consensus       372 CSI--~~~ENE~vV~yaL~K~p~~kL~  396 (460)
T KOG1122|consen  372 CSI--TVEENEAVVDYALKKRPEVKLV  396 (460)
T ss_pred             eec--chhhhHHHHHHHHHhCCceEec
Confidence            553  3344577888899999999873

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=90.14  E-value=0.76  Score=37.34  Aligned_cols=52  Identities=15%  Similarity=0.375  Sum_probs=42.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +...++.+||-..+.+ ....||+|=+|.|-.      |     .+|.+.+.+..+.+|++++-
T Consensus       102 ~~~~v~n~DAN~lm~~-~~~~fd~IDiDPFGS------P-----aPFlDaA~~s~~~~G~l~vT  153 (380)
T COG1867         102 EDAEVINKDANALLHE-LHRAFDVIDIDPFGS------P-----APFLDAALRSVRRGGLLCVT  153 (380)
T ss_pred             ccceeecchHHHHHHh-cCCCccEEecCCCCC------C-----chHHHHHHHHhhcCCEEEEE
Confidence            3445666999999988 678999999997742      2     57899999999999999865

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.94  E-value=0.43  Score=34.54  Aligned_cols=18  Identities=39%  Similarity=0.543  Sum_probs=15.6

Q ss_pred             HHHHHHHHHhcCCCcEEE
Q psy4593          51 ASYFELMSRALRPGGIVC   68 (132)
Q Consensus        51 ~eF~~~~~~~L~p~Gil~   68 (132)
                      .++.+.|++.|+|+|++-
T Consensus        66 ~~alkechr~Lrp~G~Lr   83 (185)
T COG4627          66 TSALKECHRFLRPGGKLR   83 (185)
T ss_pred             HHHHHHHHHHhCcCcEEE
Confidence            457799999999999984

>KOG1270|consensus

Probab=89.88  E-value=0.28  Score=38.20  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=27.8

Q ss_pred             CCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593          25 KNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus        25 ~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ..+||+|++ ++...   ...     -+||.+.|.+.|+|||.+.+-.
T Consensus       156 ~~~fDaVvcsevleH---V~d-----p~~~l~~l~~~lkP~G~lfitt  195 (282)
T KOG1270|consen  156 TGKFDAVVCSEVLEH---VKD-----PQEFLNCLSALLKPNGRLFITT  195 (282)
T ss_pred             ccccceeeeHHHHHH---HhC-----HHHHHHHHHHHhCCCCceEeee
Confidence            456999985 43321   111     1899999999999999998743

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=89.80  E-value=0.44  Score=35.63  Aligned_cols=56  Identities=14%  Similarity=0.070  Sum_probs=37.0

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGI   66 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gi   66 (132)
                      +.+.++++..+|..++-.. ....||.|+-= ++-     ..+. =.-..+++.+++.|+|||.
T Consensus        94 ~~~~~v~~~~~D~~~l~~~-~~~~fd~v~D~~~~~-----~l~~-~~R~~~~~~l~~lL~pgG~  150 (218)
T PRK13255         94 YQAGEITIYCGDFFALTAA-DLADVDAVYDRAALI-----ALPE-EMRERYVQQLAALLPAGCR  150 (218)
T ss_pred             cccCceEEEECcccCCCcc-cCCCeeEEEehHhHh-----hCCH-HHHHHHHHHHHHHcCCCCe
Confidence            3467888899998886433 23578887731 111     1111 1257889999999999985

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=89.78  E-value=0.33  Score=37.74  Aligned_cols=61  Identities=23%  Similarity=0.266  Sum_probs=43.4

Q ss_pred             CCCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCC
Q psy4593           6 GYPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL   74 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~   74 (132)
                      ..++.++.+|-.++-... ..++||+|+.=-|-.     -+..+  .++++.++++|+|||+-+ |.|..
T Consensus       143 ~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID-----TA~Ni--~~Yi~tI~~lLkpgG~WI-N~GPL  204 (270)
T PF07942_consen  143 PSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID-----TAENI--IEYIETIEHLLKPGGYWI-NFGPL  204 (270)
T ss_pred             CCceeEecCccEEecCCcccCCcccEEEEEEEee-----chHHH--HHHHHHHHHHhccCCEEE-ecCCc
Confidence            568889999988876551 257999999654421     12233  689999999999999664 55443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=89.36  E-value=0.11  Score=39.92  Aligned_cols=53  Identities=15%  Similarity=0.201  Sum_probs=40.6

Q ss_pred             EEEccHHHHhcCCCCCeecEEE-EcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593          11 SARQDCTDFMSGPVKNMCGLVV-SGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus        11 v~~~Dg~~~l~~~~~~~yDvIi-~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      +.++|+..|++..++++||+|. .|+...   .+--     ..+|-.+...|+|||.++..+
T Consensus       172 L~~Aea~~Fl~~~~~er~DLi~AaDVl~Y---lG~L-----e~~~~~aa~~L~~gGlfaFSv  225 (287)
T COG4976         172 LYVAEAVLFLEDLTQERFDLIVAADVLPY---LGAL-----EGLFAGAAGLLAPGGLFAFSV  225 (287)
T ss_pred             HHHHHHHHHhhhccCCcccchhhhhHHHh---hcch-----hhHHHHHHHhcCCCceEEEEe
Confidence            4568899999854789999999 476543   3333     456889999999999998754

>KOG1540|consensus

Probab=89.04  E-value=1.3  Score=34.62  Aligned_cols=51  Identities=16%  Similarity=0.115  Sum_probs=36.0

Q ss_pred             CCCCcEEEEccHHHHhcCCCCCeecEEEE-----cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           5 RGYPVLSARQDCTDFMSGPVKNMCGLVVS-----GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~-----D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      .++++..+.+||-+ |.= .++.||...+     .++|+            ..-++.++|.|||||.+..
T Consensus       157 ~~~~~~w~~~dAE~-LpF-dd~s~D~yTiafGIRN~th~------------~k~l~EAYRVLKpGGrf~c  212 (296)
T KOG1540|consen  157 ASSRVEWVEGDAED-LPF-DDDSFDAYTIAFGIRNVTHI------------QKALREAYRVLKPGGRFSC  212 (296)
T ss_pred             cCCceEEEeCCccc-CCC-CCCcceeEEEecceecCCCH------------HHHHHHHHHhcCCCcEEEE
Confidence            35668888888766 332 5677887764     33333            4568999999999999874

>PHA03412 putative methyltransferase; Provisional

Probab=88.92  E-value=1.2  Score=34.20  Aligned_cols=59  Identities=12%  Similarity=0.014  Sum_probs=36.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCC-CCC---CCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGR-VVC---PAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~-~~~---~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ++++++.+|...+-   .+.+||+||.+.+= +.. ...   ....++...|++.+.+.|++|+ +++
T Consensus        97 ~~~~~~~~D~~~~~---~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL  160 (241)
T PHA03412         97 PEATWINADALTTE---FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FII  160 (241)
T ss_pred             cCCEEEEcchhccc---ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence            56889999987653   24589999998641 100 000   1123567778889888555555 554

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=88.82  E-value=1.8  Score=34.97  Aligned_cols=53  Identities=17%  Similarity=0.151  Sum_probs=38.3

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      +++++.+|+.+++.. ...+||+|++|.+-.    +.     ..++.+.+. .++|++++.+-+
T Consensus       282 ~~~~~~~d~~~~~~~-~~~~~D~vi~DPPr~----G~-----~~~~l~~l~-~~~p~~ivyvsc  334 (374)
T TIGR02085       282 NLSFAALDSAKFATA-QMSAPELVLVNPPRR----GI-----GKELCDYLS-QMAPKFILYSSC  334 (374)
T ss_pred             cEEEEECCHHHHHHh-cCCCCCEEEECCCCC----CC-----cHHHHHHHH-hcCCCeEEEEEe
Confidence            789999999999865 335699999997422    22     255666665 489999887743

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=88.73  E-value=0.23  Score=37.47  Aligned_cols=37  Identities=16%  Similarity=0.324  Sum_probs=26.1

Q ss_pred             CCeecEEEEcCCCCCCCCCCCccccc---HHHHHHHHHhcCCCcEEEE
Q psy4593          25 KNMCGLVVSGAAGPGRVVCPAESLFQ---ASYFELMSRALRPGGIVCS   69 (132)
Q Consensus        25 ~~~yDvIi~D~~dp~~~~~~~~~L~t---~eF~~~~~~~L~p~Gil~~   69 (132)
                      +.+||+|-+==.        ..+|..   .+|++.|++.|+|+|++++
T Consensus       120 ~~~YDlIW~QW~--------lghLTD~dlv~fL~RCk~~L~~~G~Ivv  159 (218)
T PF05891_consen  120 EGKYDLIWIQWC--------LGHLTDEDLVAFLKRCKQALKPNGVIVV  159 (218)
T ss_dssp             TT-EEEEEEES---------GGGS-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCcEeEEEehHh--------hccCCHHHHHHHHHHHHHhCcCCcEEEE
Confidence            469999986411        113332   6789999999999999997

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=88.40  E-value=0.14  Score=39.04  Aligned_cols=28  Identities=11%  Similarity=0.132  Sum_probs=20.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGA   35 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~   35 (132)
                      .|++++.+|+.+||+. .+++||||..|.
T Consensus       132 ~ri~l~~~d~~~~L~~-~~~s~DVVY~DP  159 (234)
T PF04445_consen  132 RRIQLIHGDALEYLRQ-PDNSFDVVYFDP  159 (234)
T ss_dssp             HHEEEEES-CCCHCCC-HSS--SEEEE--
T ss_pred             hCCEEEcCCHHHHHhh-cCCCCCEEEECC
Confidence            3789999999999995 789999999995

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG1253|consensus

Probab=88.36  E-value=0.67  Score=39.01  Aligned_cols=53  Identities=19%  Similarity=0.357  Sum_probs=41.3

Q ss_pred             CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ..++.+..||..-+-+.  ..++||+|=+|.|..      +     ..|++.+-++++.||++++-
T Consensus       161 ~ive~~~~DA~~lM~~~~~~~~~FDvIDLDPyGs------~-----s~FLDsAvqav~~gGLL~vT  215 (525)
T KOG1253|consen  161 DIVEPHHSDANVLMYEHPMVAKFFDVIDLDPYGS------P-----SPFLDSAVQAVRDGGLLCVT  215 (525)
T ss_pred             hhcccccchHHHHHHhccccccccceEecCCCCC------c-----cHHHHHHHHHhhcCCEEEEE
Confidence            45678888988766441  348999999998743      2     67999999999999999754

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=88.22  E-value=1.8  Score=35.41  Aligned_cols=53  Identities=11%  Similarity=0.070  Sum_probs=38.2

Q ss_pred             CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      .+++++.+|+.+++.+.  ...+||+|++|.+..    +.     ..++++.+.+ |+|+|++.+
T Consensus       340 ~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~----G~-----~~~~l~~l~~-l~~~~ivyv  394 (431)
T TIGR00479       340 ANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRK----GC-----AAEVLRTIIE-LKPERIVYV  394 (431)
T ss_pred             CceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCC----CC-----CHHHHHHHHh-cCCCEEEEE
Confidence            47899999999987542  235799999997532    21     3677777664 899998765

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=87.82  E-value=1.4  Score=32.26  Aligned_cols=59  Identities=17%  Similarity=0.069  Sum_probs=42.6

Q ss_pred             CcEEEEccHHH---HhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           8 PVLSARQDCTD---FMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         8 rv~v~~~Dg~~---~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .++++.+||..   ++.+.....||.||+-+.--    ..+ .=-+.+.++.+..+|..||.+++-.
T Consensus        95 ~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll----~~P-~~~~iaile~~~~rl~~gg~lvqft  156 (194)
T COG3963          95 GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLL----NFP-MHRRIAILESLLYRLPAGGPLVQFT  156 (194)
T ss_pred             CccccccchhhHHHHHhhcCCCeeeeEEeccccc----cCc-HHHHHHHHHHHHHhcCCCCeEEEEE
Confidence            34578899765   45554567899999988532    222 1236888999999999999999743

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=87.80  E-value=1.9  Score=31.57  Aligned_cols=53  Identities=21%  Similarity=0.315  Sum_probs=41.2

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT   73 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~   73 (132)
                      ++++++.+.+-+  .. ...+||+|+.=+..+           -..+++.+...|+++|.++..-|.
T Consensus        98 ~nv~v~~~R~E~--~~-~~~~fd~v~aRAv~~-----------l~~l~~~~~~~l~~~G~~l~~KG~  150 (184)
T PF02527_consen   98 SNVEVINGRAEE--PE-YRESFDVVTARAVAP-----------LDKLLELARPLLKPGGRLLAYKGP  150 (184)
T ss_dssp             SSEEEEES-HHH--TT-TTT-EEEEEEESSSS-----------HHHHHHHHGGGEEEEEEEEEEESS
T ss_pred             CCEEEEEeeecc--cc-cCCCccEEEeehhcC-----------HHHHHHHHHHhcCCCCEEEEEcCC
Confidence            578899988888  33 568999999988765           267899999999999999987544

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=87.57  E-value=1.7  Score=32.51  Aligned_cols=69  Identities=16%  Similarity=0.150  Sum_probs=44.7

Q ss_pred             CeecEEEEcCCCCCCCCCCCcccc----cHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEe
Q psy4593          26 NMCGLVVSGAAGPGRVVCPAESLF----QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYG   98 (132)
Q Consensus        26 ~~yDvIi~D~~dp~~~~~~~~~L~----t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~   98 (132)
                      ...|+|++|..-...+.-...+..    ..--++.+.+.|+|+|.++.-    ..+.+....+++.+++.|..|...
T Consensus       110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K----~fqg~~~~~~l~~~~~~F~~v~~~  182 (205)
T COG0293         110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK----VFQGEDFEDLLKALRRLFRKVKIF  182 (205)
T ss_pred             CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE----EEeCCCHHHHHHHHHHhhceeEEe
Confidence            457999999875421111111111    223346677899999999973    223334678999999999998863

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=87.51  E-value=6  Score=31.87  Aligned_cols=51  Identities=16%  Similarity=0.232  Sum_probs=41.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .++..+.+|+++.+.. . ..+|-||...+.           .+.+|+..+.++|+++|++-..
T Consensus       238 ~~v~~i~gD~rev~~~-~-~~aDrIim~~p~-----------~a~~fl~~A~~~~k~~g~iHyy  288 (341)
T COG2520         238 GRVEPILGDAREVAPE-L-GVADRIIMGLPK-----------SAHEFLPLALELLKDGGIIHYY  288 (341)
T ss_pred             ceeeEEeccHHHhhhc-c-ccCCEEEeCCCC-----------cchhhHHHHHHHhhcCcEEEEE
Confidence            3478899999998766 2 788999887753           3588999999999999999875

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=87.31  E-value=0.67  Score=34.74  Aligned_cols=56  Identities=14%  Similarity=0.170  Sum_probs=39.7

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEE-EcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVV-SGAAGPGRVVCPAESLFQASYFELMSRALRPGGI   66 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi-~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gi   66 (132)
                      +.+.+++++++|-.++=.. ...+||+|. .-++-     +.+ .-.-.++.+.+++.|+|||.
T Consensus        94 ~~~~~i~~~~gDfF~l~~~-~~g~fD~iyDr~~l~-----Alp-p~~R~~Ya~~l~~ll~p~g~  150 (218)
T PF05724_consen   94 YQAGRITIYCGDFFELPPE-DVGKFDLIYDRTFLC-----ALP-PEMRERYAQQLASLLKPGGR  150 (218)
T ss_dssp             ETTSSEEEEES-TTTGGGS-CHHSEEEEEECSSTT-----TS--GGGHHHHHHHHHHCEEEEEE
T ss_pred             ecCCceEEEEcccccCChh-hcCCceEEEEecccc-----cCC-HHHHHHHHHHHHHHhCCCCc
Confidence            4577899999999885444 335899987 22221     222 33578899999999999999

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA

Probab=86.90  E-value=2.4  Score=30.41  Aligned_cols=45  Identities=7%  Similarity=0.037  Sum_probs=27.8

Q ss_pred             ecEEEEcCCCCCCCCC--------CCcccccH-HHHHH-HHHhcCCCcEEEEecCCC
Q psy4593          28 CGLVVSGAAGPGRVVC--------PAESLFQA-SYFEL-MSRALRPGGIVCSQAGTL   74 (132)
Q Consensus        28 yDvIi~D~~dp~~~~~--------~~~~L~t~-eF~~~-~~~~L~p~Gil~~~~~~~   74 (132)
                      ||+|+.|.+  |....        ..-...+. +..+. +.+.++++|++.+++.+.
T Consensus         1 fdvI~~DPP--W~~~~~~~~~~~~~~Y~tm~~~~i~~Lpv~~l~~~~~~lflWvTn~   55 (176)
T PF05063_consen    1 FDVIYADPP--WPNKSASRKGGAEAHYPTMSLDEIKSLPVPQLAAPGALLFLWVTNS   55 (176)
T ss_pred             CCEEEEeCC--CCCcCcccccccccCCCccCHHHHHhCCHHHhCCCCcEEEEEeccc
Confidence            899999984  32111        01122343 33333 677888989999997664

It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process

>KOG3010|consensus

Probab=86.01  E-value=1.9  Score=33.27  Aligned_cols=24  Identities=17%  Similarity=0.317  Sum_probs=20.3

Q ss_pred             cHHHHHHHHHhcCCCc-EEEEecCC
Q psy4593          50 QASYFELMSRALRPGG-IVCSQAGT   73 (132)
Q Consensus        50 t~eF~~~~~~~L~p~G-il~~~~~~   73 (132)
                      -.+||+.+++.|+++| ++++|+-+
T Consensus       115 le~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen  115 LERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence            4789999999999877 88888644

>TIGR03438 probable methyltransferase

Probab=85.43  E-value=1.6  Score=34.01  Aligned_cols=57  Identities=16%  Similarity=0.101  Sum_probs=33.3

Q ss_pred             cEEEEccHHHHhcCC--C-CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           9 VLSARQDCTDFMSGP--V-KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         9 v~v~~~Dg~~~l~~~--~-~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++.+++|..+.+.-.  . .....+++.+..-..  .. +  --...|++.++++|+|||.+++-
T Consensus       117 v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~--~~-~--~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       117 VHGICADFTQPLALPPEPAAGRRLGFFPGSTIGN--FT-P--EEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             EEEEEEcccchhhhhcccccCCeEEEEecccccC--CC-H--HHHHHHHHHHHHhcCCCCEEEEe
Confidence            445788876543220  1 113344555554331  11 1  11367999999999999999864

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=85.34  E-value=1.6  Score=33.91  Aligned_cols=20  Identities=20%  Similarity=0.187  Sum_probs=17.6

Q ss_pred             HHHHHHHHHhcCCCcEEEEe
Q psy4593          51 ASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus        51 ~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ...++.++++|+|||.+++.
T Consensus       234 ~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       234 TIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             HHHHHHHHHhcCCCCEEEEE
Confidence            45799999999999999875

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=85.22  E-value=0.92  Score=34.85  Aligned_cols=55  Identities=16%  Similarity=0.139  Sum_probs=41.0

Q ss_pred             CCCCcEEEEccHHHHhcCCCCCeecEEEEcC--CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGA--AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~--~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++++++.++-.+-|.+...+++-++-+|+  ++|           |.+-++.++.+|.|||++++-
T Consensus       155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYes-----------T~~aLe~lyprl~~GGiIi~D  211 (248)
T PF05711_consen  155 LDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYES-----------TKDALEFLYPRLSPGGIIIFD  211 (248)
T ss_dssp             SSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHH-----------HHHHHHHHGGGEEEEEEEEES
T ss_pred             CcccEEEECCcchhhhccCCCccEEEEEEeccchHH-----------HHHHHHHHHhhcCCCeEEEEe
Confidence            4689999999999998874557787777765  333           688899999999999999984

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=84.69  E-value=3.2  Score=33.49  Aligned_cols=59  Identities=19%  Similarity=0.217  Sum_probs=37.8

Q ss_pred             EEEc-cHHHHhcCCCCCeecEEEEcCCCCCCCCCCCc--ccccHHHHHHHHHhcCCCcEEEEec
Q psy4593          11 SARQ-DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAE--SLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus        11 v~~~-Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~--~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      +... ||.. +. ..++++|.|++|.+-.........  .-.-.+|++...+.|++||.++..+
T Consensus       249 ~~~~~Da~~-lp-l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~  310 (347)
T COG1041         249 VLKVLDATN-LP-LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA  310 (347)
T ss_pred             EEEeccccc-CC-CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence            3444 6554 33 244579999999864310001111  1224789999999999999999875

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=84.68  E-value=2.4  Score=29.96  Aligned_cols=54  Identities=13%  Similarity=0.014  Sum_probs=35.6

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh--cCCCcEEEEec
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA--LRPGGIVCSQA   71 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~--L~p~Gil~~~~   71 (132)
                      .++++++.+|+.++...  +.+||.|+.++  |   ..    . +.+.+..+.+.  +.++|++++|-
T Consensus        58 ~~~v~ii~~D~~~~~~~--~~~~d~vi~n~--P---y~----~-~~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       58 ADNLTVIHGDALKFDLP--KLQPYKVVGNL--P---YN----I-STPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             CCCEEEEECchhcCCcc--ccCCCEEEECC--C---cc----c-HHHHHHHHHhcCCCcceEEEEEEH
Confidence            46899999999987433  34699999986  3   11    2 23444444433  44889998874

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=84.55  E-value=5.7  Score=31.13  Aligned_cols=54  Identities=17%  Similarity=0.155  Sum_probs=36.2

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|+.+++.. ..++||+|++|.+..    +.     ..+..+.+ ..++|++++.+-+
T Consensus       221 ~~v~~~~~D~~~~~~~-~~~~~D~Vv~dPPr~----G~-----~~~~~~~l-~~~~~~~ivyvsc  274 (315)
T PRK03522        221 TNVQFQALDSTQFATA-QGEVPDLVLVNPPRR----GI-----GKELCDYL-SQMAPRFILYSSC  274 (315)
T ss_pred             CceEEEEcCHHHHHHh-cCCCCeEEEECCCCC----Cc-----cHHHHHHH-HHcCCCeEEEEEC
Confidence            4789999999998765 345799999996422    22     23333333 3478888777644

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=83.77  E-value=0.82  Score=33.80  Aligned_cols=81  Identities=19%  Similarity=0.103  Sum_probs=43.0

Q ss_pred             cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec--CCCCC---ChHHHHH
Q psy4593           9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA--GTLWY---SLDCVGN   83 (132)
Q Consensus         9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~--~~~~~---~~~~~~~   83 (132)
                      ++....|--++  . -+++||+|+....-.   .-.+ .+ -+..++.++++++|||++++.+  ..+..   ....+.-
T Consensus        79 i~~~~~Dl~~~--~-~~~~yD~I~st~v~~---fL~~-~~-~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~  150 (192)
T PF03848_consen   79 IRTRVADLNDF--D-FPEEYDFIVSTVVFM---FLQR-EL-RPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLL  150 (192)
T ss_dssp             EEEEE-BGCCB--S--TTTEEEEEEESSGG---GS-G-GG-HHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B
T ss_pred             eEEEEecchhc--c-ccCCcCEEEEEEEec---cCCH-HH-HHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCccc
Confidence            56666773332  1 246799999764322   1222 22 2778999999999999988632  11111   0111111


Q ss_pred             HHHHHHhhCCCceE
Q psy4593          84 TLQHCASVFPRVAY   97 (132)
Q Consensus        84 ~~~~l~~vF~~v~~   97 (132)
                      --+.|++.|.+-.+
T Consensus       151 ~~~EL~~~y~dW~i  164 (192)
T PF03848_consen  151 KPGELREYYADWEI  164 (192)
T ss_dssp             -TTHHHHHTTTSEE
T ss_pred             CHHHHHHHhCCCeE
Confidence            22457777776655

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=83.36  E-value=1.8  Score=32.76  Aligned_cols=61  Identities=8%  Similarity=0.045  Sum_probs=40.1

Q ss_pred             CCCCCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           4 YRGYPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      +...+++++++|..++=.. ....+||+|+ |..-=   ...+ .=....+.+.+++.|+|||.++.
T Consensus       100 ~~~~~i~~~~gD~f~l~~~~~~~~~fD~Vy-Dra~~---~Alp-p~~R~~Y~~~l~~lL~pgg~lll  161 (226)
T PRK13256        100 YKGDDIEIYVADIFNLPKIANNLPVFDIWY-DRGAY---IALP-NDLRTNYAKMMLEVCSNNTQILL  161 (226)
T ss_pred             eccCceEEEEccCcCCCccccccCCcCeee-eehhH---hcCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence            4566889999998885211 0235799965 32110   1222 23468899999999999998764

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=82.64  E-value=4.6  Score=33.25  Aligned_cols=54  Identities=13%  Similarity=0.082  Sum_probs=37.0

Q ss_pred             CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++++.+|+.+++.+.  .+++||+|++|.+-.    +    +  .+..+.+.+ |+|++++.+-+
T Consensus       345 ~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~----g----~--~~~~~~l~~-~~~~~ivyvSC  400 (443)
T PRK13168        345 DNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRA----G----A--AEVMQALAK-LGPKRIVYVSC  400 (443)
T ss_pred             CceEEEEeChHHhhhhhhhhcCCCCEEEECcCCc----C----h--HHHHHHHHh-cCCCeEEEEEe
Confidence            36899999999887431  245799999997432    2    1  244555554 79999877644

>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length

Probab=82.53  E-value=1  Score=32.83  Aligned_cols=42  Identities=26%  Similarity=0.360  Sum_probs=27.8

Q ss_pred             CeecEEEEcCCCCCCCCCCCcccc----cHHHHHHHHHhcCCCcEEEEecCCC
Q psy4593          26 NMCGLVVSGAAGPGRVVCPAESLF----QASYFELMSRALRPGGIVCSQAGTL   74 (132)
Q Consensus        26 ~~yDvIi~D~~dp~~~~~~~~~L~----t~eF~~~~~~~L~p~Gil~~~~~~~   74 (132)
                      .+||+||++=..       +..|.    +.+.++.+++-.+.||-+++-+|..
T Consensus        66 ~~yD~vIl~dv~-------~~~ll~~~~~~~~~~~l~~yV~~GGgLlmigG~~  111 (177)
T PF07090_consen   66 NRYDVVILSDVP-------ANSLLKSRRSPNQLELLADYVRDGGGLLMIGGPR  111 (177)
T ss_dssp             CT-SEEEEES---------HHHHHT----HHHHHHHHHHHHTT-EEEEE-STT
T ss_pred             hcCCEEEEeCCC-------chhcccccCCHHHHHHHHHHHHhCCEEEEEeChh
Confidence            579999987433       23343    8999999999999999998865443

The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=82.30  E-value=6.5  Score=30.53  Aligned_cols=53  Identities=19%  Similarity=0.325  Sum_probs=33.2

Q ss_pred             HHhcCCCCCeecEEEEcCC-CCCC--CCCC---------------CcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593          18 DFMSGPVKNMCGLVVSGAA-GPGR--VVCP---------------AESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus        18 ~~l~~~~~~~yDvIi~D~~-dp~~--~~~~---------------~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+.+. -.++||+|+...+ -|..  ...+               .+--+...|...+.+.|+|+|++++-.
T Consensus       168 dlf~~-~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~  238 (280)
T COG2890         168 DLFEP-LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI  238 (280)
T ss_pred             ecccc-cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence            55555 4459999998754 1210  0000               111245667788999999999999875

>KOG2915|consensus

Probab=82.16  E-value=4.4  Score=31.93  Aligned_cols=77  Identities=14%  Similarity=0.056  Sum_probs=46.5

Q ss_pred             CCcEEEEccH--HHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHH
Q psy4593           7 YPVLSARQDC--TDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT   84 (132)
Q Consensus         7 ~rv~v~~~Dg--~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~   84 (132)
                      .++.+++.|.  .-|..+  +..+|+|++|+..||  .+.|          .+..+|+.+|..+.+.   ..=.+.+++.
T Consensus       157 ~~vt~~hrDVc~~GF~~k--s~~aDaVFLDlPaPw--~AiP----------ha~~~lk~~g~r~csF---SPCIEQvqrt  219 (314)
T KOG2915|consen  157 DNVTVTHRDVCGSGFLIK--SLKADAVFLDLPAPW--EAIP----------HAAKILKDEGGRLCSF---SPCIEQVQRT  219 (314)
T ss_pred             cceEEEEeecccCCcccc--ccccceEEEcCCChh--hhhh----------hhHHHhhhcCceEEec---cHHHHHHHHH
Confidence            4566666662  223332  578999999999997  5544          2233788777544431   1113456666


Q ss_pred             HHHHHh-hCCCceEeEE
Q psy4593          85 LQHCAS-VFPRVAYGAT  100 (132)
Q Consensus        85 ~~~l~~-vF~~v~~~~~  100 (132)
                      .+.|++ -|-++.....
T Consensus       220 ce~l~~~gf~~i~~vEv  236 (314)
T KOG2915|consen  220 CEALRSLGFIEIETVEV  236 (314)
T ss_pred             HHHHHhCCCceEEEEEe
Confidence            667776 4877766444

>KOG4589|consensus

Probab=81.39  E-value=5.4  Score=29.93  Aligned_cols=71  Identities=15%  Similarity=0.094  Sum_probs=42.7

Q ss_pred             CCCeecEEEEcCCCCCCCCCCCcccccHH----HHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEe
Q psy4593          24 VKNMCGLVVSGAAGPGRVVCPAESLFQAS----YFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYG   98 (132)
Q Consensus        24 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~e----F~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~   98 (132)
                      ...+-|+|+.|...-.++...-.+.-+.|    -+...-.-|.|+|.++.-.   | +.+.-..+.+.|.++|..|...
T Consensus       133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~---w-~g~e~~~l~r~l~~~f~~Vk~v  207 (232)
T KOG4589|consen  133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL---W-DGSEEALLQRRLQAVFTNVKKV  207 (232)
T ss_pred             CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE---e-cCCchHHHHHHHHHHhhhcEee
Confidence            45789999999764321222222221111    2233345578999999631   2 2223567889999999999864

>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO)

Probab=81.34  E-value=2.3  Score=27.66  Aligned_cols=36  Identities=17%  Similarity=0.278  Sum_probs=25.1

Q ss_pred             CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593          26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus        26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ..||++|.|+++.          ++++-+..+...++-||++++-+
T Consensus        10 ~e~~~~i~d~~~g----------~~pnal~a~~gtv~gGGllill~   45 (92)
T PF08351_consen   10 QEFDLLIFDAFEG----------FDPNALAALAGTVRGGGLLILLL   45 (92)
T ss_dssp             --BSSEEEE-SS-------------HHHHHHHHTTB-TT-EEEEEE
T ss_pred             CccCEEEEEccCC----------CCHHHHHHHhcceecCeEEEEEc
Confidence            4799999999865          46788999999999999998754

; PDB: 2ZPA_B.

>KOG2940|consensus

Probab=81.32  E-value=0.55  Score=36.26  Aligned_cols=56  Identities=16%  Similarity=0.168  Sum_probs=36.7

Q ss_pred             CCCCcEEE--EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           5 RGYPVLSA--RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         5 ~d~rv~v~--~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      +||.+++.  ++| -++|.= .++++|+||.-+.-.|. ...      +..+..|+.+|||+|++..
T Consensus       115 qdp~i~~~~~v~D-EE~Ldf-~ens~DLiisSlslHW~-NdL------Pg~m~~ck~~lKPDg~Fia  172 (325)
T KOG2940|consen  115 QDPSIETSYFVGD-EEFLDF-KENSVDLIISSLSLHWT-NDL------PGSMIQCKLALKPDGLFIA  172 (325)
T ss_pred             CCCceEEEEEecc-hhcccc-cccchhhhhhhhhhhhh-ccC------chHHHHHHHhcCCCccchh
Confidence            45555443  233 234443 67899999987765541 122      3458999999999999974

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=81.02  E-value=1.3  Score=32.70  Aligned_cols=55  Identities=20%  Similarity=0.180  Sum_probs=29.9

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +|+....|-.+ . .....+||+|++ ++.-.   ..   .-....-++.++++|+|||.+++-
T Consensus       119 ~V~F~~~NL~~-~-~~~~~~fD~I~CRNVlIY---F~---~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  119 MVRFRRHNLLD-P-DPPFGRFDLIFCRNVLIY---FD---PETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TEEEEE--TT--S-------EEEEEE-SSGGG---S----HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             ceEEEecccCC-C-CcccCCccEEEecCEEEE---eC---HHHHHHHHHHHHHHcCCCCEEEEe
Confidence            34444555444 1 114578999996 43221   11   123477889999999999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG0822|consensus

Probab=80.94  E-value=1.3  Score=37.78  Aligned_cols=85  Identities=14%  Similarity=0.158  Sum_probs=56.3

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCC----ChHHH
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWY----SLDCV   81 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~----~~~~~   81 (132)
                      +.||+|+-.|-|.|-.  ..++-|+|+..+-..     ....-.++|-+..+-.-|+|+||.+-+..+.+.    ...++
T Consensus       420 ~~~Vtii~~DMR~w~a--p~eq~DI~VSELLGS-----FGDNELSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~  492 (649)
T KOG0822|consen  420 DNRVTIISSDMRKWNA--PREQADIIVSELLGS-----FGDNELSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLY  492 (649)
T ss_pred             cCeeEEEeccccccCC--chhhccchHHHhhcc-----ccCccCCHHHHHHHHhhcCCCceEccchhhhhhcccccHHHH
Confidence            5789999999999852  248999999877433     223455899999999999999998755322222    23333


Q ss_pred             HHHHHHHH-hhCCCceE
Q psy4593          82 GNTLQHCA-SVFPRVAY   97 (132)
Q Consensus        82 ~~~~~~l~-~vF~~v~~   97 (132)
                      +.+.++-. ..|...++
T Consensus       493 q~v~a~~~~~~fe~~YV  509 (649)
T KOG0822|consen  493 QEVKATNDPNAFEAPYV  509 (649)
T ss_pred             HHHHhcCCccccccceE
Confidence            43333333 25765443

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=80.52  E-value=2  Score=30.82  Aligned_cols=55  Identities=11%  Similarity=0.072  Sum_probs=30.8

Q ss_pred             CCeecEEE-EcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHh
Q psy4593          25 KNMCGLVV-SGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS   90 (132)
Q Consensus        25 ~~~yDvIi-~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~   90 (132)
                      .++||+|| .|+.=-        .-.-..+.+.+++.|+++|.+.+-.  +.+ ....+.+++.+++
T Consensus       117 ~~~~D~IlasDv~Y~--------~~~~~~L~~tl~~ll~~~~~vl~~~--~~R-~~~~~~F~~~~~k  172 (173)
T PF10294_consen  117 PHSFDVILASDVLYD--------EELFEPLVRTLKRLLKPNGKVLLAY--KRR-RKSEQEFFDRLKK  172 (173)
T ss_dssp             -SSBSEEEEES--S---------GGGHHHHHHHHHHHBTT-TTEEEEE--E-S--TGGCHHHHHH--
T ss_pred             cccCCEEEEecccch--------HHHHHHHHHHHHHHhCCCCEEEEEe--CEe-cHHHHHHHHHhhh
Confidence            46899999 686411        1234788999999999999855532  222 2223455556554

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=80.39  E-value=4.3  Score=31.73  Aligned_cols=58  Identities=12%  Similarity=0.107  Sum_probs=35.9

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ..+++++.+|+...-.+  -..||+|++-+--+   +..-   =-.+.++.+.++++||..+++..
T Consensus       173 ~~~m~f~~~d~~~~~~d--l~~~DvV~lAalVg---~~~e---~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  173 SKRMSFITADVLDVTYD--LKEYDVVFLAALVG---MDAE---PKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             -SSEEEEES-GGGG-GG------SEEEE-TT-S----------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             cCCeEEEecchhccccc--cccCCEEEEhhhcc---cccc---hHHHHHHHHHhhCCCCcEEEEec
Confidence            57889999998764322  35899999987532   1111   24788999999999999999874

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
3rw9_A	304	Crystal Structure Of Human Spermidine Synthase In C		9e-18
2o05_A	304	Human Spermidine Synthase Length = 304		1e-17
1xj5_A	334	X-Ray Structure Of Spermidine Synthase From Arabido		2e-16
2b2c_A	314	Cloning, Expression, Characterisation And Three- Di		4e-14
2pss_A	321	The Structure Of Plasmodium Falciparum Spermidine S		1e-11
2pwp_A	282	Crystal Structure Of Spermidine Synthase From Plasm		1e-11
2hte_A	283	The Crystal Structure Of Spermidine Synthase From P		1e-11
1iy9_A	275	Crystal Structure Of Spermidine Synthase Length = 2		4e-09
3bwb_A	304	Crystal Structure Of The Apo Form Of Spermidine Syn		2e-07
3o4f_A	294	Crystal Structure Of Spermidine Synthase From E. Co		4e-05
1mjf_A	281	Putative Spermidine Synthetase From Pyrococcus Furi		3e-04
2e5w_A	280	Crystal Structure Of Spermidine Synthase From Pyroc		9e-04

>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex With Decarboxylated S-Adenosylhomocysteine Length = 304

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 14/112 (12%)
Query: 6   GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65
           G+  +   QD  D           ++++ ++ P   + PAESLF+ SY++LM  AL+  G
Sbjct: 158 GFEFMKQNQDAFD-----------VIITDSSDP---MGPAESLFKESYYQLMKTALKEDG 203
Query: 66  IVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
           ++C Q    W  LD +    Q C S+FP VAY    +PTYPSGQIGF+L S+
Sbjct: 204 VLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSK 255

>pdb|2O05|A Chain A, Human Spermidine Synthase Length = 304

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 14/112 (12%)
Query: 6   GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG 65
           G+  +   QD  D           ++++ ++ P   + PAESLF+ SY++LM  AL+  G
Sbjct: 158 GFEFMKQNQDAFD-----------VIITDSSDP---MGPAESLFKESYYQLMKTALKEDG 203
Query: 66  IVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
           ++C Q    W  LD +    Q C S+FP VAY    +PTYPSGQIGF+L S+
Sbjct: 204 VLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSK 255

>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis Thaliana Gene At1g23820 Length = 334

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Query: 15  DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL 74
           D   F+    +     V+  ++ P   + PA+ LF+  +F+ ++RALRPGG+VC+QA +L
Sbjct: 182 DGVAFLKNAAEGSYDAVIVDSSDP---IGPAKELFEKPFFQSVARALRPGGVVCTQAESL 238
Query: 75  WYSLDCVGNTLQHCASVFP-RVAYGATCVPTYPSGQIGFVL 114
           W   D + + + +C  +F   V Y  T VPTYPSG IGF L
Sbjct: 239 WLHXDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFXL 279

>pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three- Dimensional Structure Determination Of The Caenorhabditis Elegans Spermidine Synthase Length = 314

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 25  KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
           KN   ++++ ++ P   V PAESLF  SY+EL+  AL+  GI+ SQ  ++W  L  + + 
Sbjct: 179 KNEFDVIITDSSDP---VGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHL 235
Query: 85  LQHCASVFPRVAYGATCVPTYPSGQIGFVL 114
           +     +FP V Y  + V TYPSG +G+++
Sbjct: 236 VAFNRKIFPAVTYAQSIVSTYPSGSMGYLI 265

>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase In Its Apo- Form Length = 321

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 14  QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73
           +D + F+   V N   +++  ++ P   + PAE+LF  +++E +  AL+P G   +Q  +
Sbjct: 177 EDASKFLEN-VTNTYDVIIVDSSDP---IGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232
Query: 74  LWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFV 113
           LW  +  + N + +   +F +V Y    +PTYP G IG +
Sbjct: 233 LWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGIL 272

>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium Falciparum In Complex With Spermidine Length = 282

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 14  QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73
           +D + F+   V N   +++  ++ P   + PAE+LF  +++E +  AL+P G   +Q  +
Sbjct: 138 EDASKFLEN-VTNTYDVIIVDSSDP---IGPAETLFNQNFYEKIYNALKPNGYCVAQCES 193
Query: 74  LWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFV 113
           LW  +  + N + +   +F +V Y    +PTYP G IG +
Sbjct: 194 LWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGIL 233

>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P. Falciparum In Complex With 5'-Methylthioadenosine Length = 283

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 14  QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73
           +D + F+   V N   +++  ++ P   + PAE+LF  +++E +  AL+P G   +Q  +
Sbjct: 139 EDASKFLEN-VTNTYDVIIVDSSDP---IGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194
Query: 74  LWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFV 113
           LW  +  + N + +   +F +V Y    +PTYP G IG +
Sbjct: 195 LWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGIL 234

>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase Length = 275

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 25  KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT 84
           +N   +++  +  P   V PA +LF   ++  +++AL+  GI  +Q    W++ + + N 
Sbjct: 146 ENQYDVIMVDSTEP---VGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNV 202
Query: 85  LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
            +    +FP        +PTYPSG   F +GS+
Sbjct: 203 QRDVKEIFPITKLYTANIPTYPSGLWTFTIGSK 235

>pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase From Trypanosoma Cruzi At 2.5 A Resolution Length = 304

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 19  FMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSL 78
           F+     N   +V+     P     PA  LF  ++++ + R L+P GI C+Q  ++W  L
Sbjct: 161 FVRQTPDNTYDVVIIDTTDPA---GPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDL 217
Query: 79  DCVGNTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQ 117
           + +    +      F  V Y    VPTYP G IG ++ S+
Sbjct: 218 ELIEKXSRFIRETGFASVQYALXHVPTYPCGSIGTLVCSK 257

>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli Length = 294

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 30  LVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCA 89
           +++S    P   + P ESLF ++++E   R L PGGI  +Q G  +   +   ++ +  +
Sbjct: 160 VIISDCTDP---IGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLS 216
Query: 90  SVFPRVAYGATCVPTYPSGQIGFVLGSQ 117
             F  V +    +PTY  G + F   + 
Sbjct: 217 HYFSDVGFYQAAIPTYYGGIMTFAWATD 244

>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus Pfu- 132382 Length = 281

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 24  VKNMCGL--VVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCV 81
           +KN  G   +++ +  P   V PA+ LF   ++  +  AL   GI  +QAG+++   D +
Sbjct: 147 IKNNRGFDVIIADSTDP---VGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDEL 203
Query: 82  GNTLQHCASVFPRVAYGATCVPTYPS 107
            +  +    VF RV Y +  V  Y S
Sbjct: 204 ISAYKEMKKVFDRVYYYSFPVIGYAS 229

>pdb|2E5W|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus Horikoshii Ot3 Length = 280

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 42  VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATC 101
           V PAE LF   +++   RAL   GI  +QAG+++   D      +    VF +V Y +  
Sbjct: 166 VGPAEMLFSEEFYKNAYRALNDPGIYVTQAGSVYLFTDEFLTAYRKMRKVFDKVYYYSFP 225
Query: 102 VPTYPS 107
           V  Y S
Sbjct: 226 VIGYAS 231

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	2e-29
2i7c_A	283	Spermidine synthase; transferase, structural genom	2e-29
2pt6_A	321	Spermidine synthase; transferase, structural genom	3e-29
2o07_A	304	Spermidine synthase; structural genomics, structur	6e-29
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	1e-28
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	3e-28
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	4e-28
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	1e-27
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	3e-27
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	9e-25
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	6e-23
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	1e-18
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	3e-17

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Length = 314

 Score =  107 bits (269), Expect = 2e-29
 Identities = 29/73 (39%), Positives = 45/73 (61%)

Query: 44  PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
           PAESLF  SY+EL+  AL+  GI+ SQ  ++W  L  + + +     +FP V Y  + V 
Sbjct: 195 PAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVS 254

Query: 104 TYPSGQIGFVLGS 116
           TYPSG +G+++ +
Sbjct: 255 TYPSGSMGYLICA 267

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* Length = 283

 Score =  106 bits (267), Expect = 2e-29
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 44  PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
           PAE+LF  +++E +  AL+P G   +Q  +LW  +  + N + +   +F +V Y    +P
Sbjct: 165 PAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIP 224

Query: 104 TYPSGQIGFVLGS 116
           TYP G IG +  S
Sbjct: 225 TYPCGCIGILCCS 237

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* Length = 321

 Score =  107 bits (268), Expect = 3e-29
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 44  PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
           PAE+LF  +++E +  AL+P G   +Q  +LW  +  + N + +   +F +V Y    +P
Sbjct: 203 PAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIP 262

Query: 104 TYPSGQIGFVLGS 116
           TYP G IG +  S
Sbjct: 263 TYPCGCIGILCCS 275

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* Length = 304

 Score =  105 bits (265), Expect = 6e-29
 Identities = 38/73 (52%), Positives = 48/73 (65%)

Query: 44  PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
           PAESLF+ SY++LM  AL+  G++C Q    W  LD +    Q C S+FP VAY    +P
Sbjct: 182 PAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIP 241

Query: 104 TYPSGQIGFVLGS 116
           TYPSGQIGF+L S
Sbjct: 242 TYPSGQIGFMLCS 254

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Length = 296

 Score =  103 bits (260), Expect = 3e-28
 Identities = 15/73 (20%), Positives = 28/73 (38%)

Query: 44  PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
               LF   +++    AL+  G+  ++    +Y +       +  + VFP        + 
Sbjct: 178 QGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMT 237

Query: 104 TYPSGQIGFVLGS 116
           TYPSG   +   S
Sbjct: 238 TYPSGMWSYTFAS 250

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Length = 275

 Score =  103 bits (258), Expect = 4e-28
 Identities = 22/73 (30%), Positives = 38/73 (52%)

Query: 44  PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
           PA +LF   ++  +++AL+  GI  +Q    W++ + + N  +    +FP        +P
Sbjct: 162 PAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIP 221

Query: 104 TYPSGQIGFVLGS 116
           TYPSG   F +GS
Sbjct: 222 TYPSGLWTFTIGS 234

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A Length = 334

 Score =  103 bits (258), Expect = 1e-27
 Identities = 35/74 (47%), Positives = 51/74 (68%), Gaps = 1/74 (1%)

Query: 44  PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVA-YGATCV 102
           PA+ LF+  +F+ ++RALRPGG+VC+QA +LW  +D + + + +C  +F     Y  T V
Sbjct: 208 PAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSV 267

Query: 103 PTYPSGQIGFVLGS 116
           PTYPSG IGF+L S
Sbjct: 268 PTYPSGVIGFMLCS 281

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* Length = 304

 Score =  101 bits (253), Expect = 3e-27
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 44  PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV-FPRVAYGATCV 102
           PA  LF  ++++ + R L+P GI C+Q  ++W  L+ +    +      F  V Y    V
Sbjct: 183 PASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHV 242

Query: 103 PTYPSGQIGFVLGS 116
           PTYP G IG ++ S
Sbjct: 243 PTYPCGSIGTLVCS 256

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* Length = 281

 Score = 94.2 bits (235), Expect = 9e-25
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 44  PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
           PA+ LF   ++  +  AL   GI  +QAG+++   D + +  +    VF RV Y +  V 
Sbjct: 166 PAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVI 225

Query: 104 TYPSGQIGFVLGS 116
            Y S    F++G 
Sbjct: 226 GYASP-WAFLVGV 237

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* Length = 314

 Score = 90.1 bits (224), Expect = 6e-23
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 38  PGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH-CASVFPRVA 96
           P     PA  L+   ++ L+   L PGG++  Q G +  +   V   +       F  V 
Sbjct: 162 PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVR 221

Query: 97  YGATCVPTYPSGQIGFVLGS 116
                +P +     GF+L S
Sbjct: 222 SYKNHIPGFFLN-FGFLLAS 240

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A Length = 262

 Score = 74.4 bits (183), Expect = 3e-17
 Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 11/73 (15%)

Query: 44  PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
             + L          R L+  G+  S A         + N L++   VF         + 
Sbjct: 153 RIDGLK---------RMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVAPLR 203

Query: 104 TYPSGQIGFVLGS 116
              +   G++  S
Sbjct: 204 ILSNK--GYIYAS 214

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	100.0
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.93
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	99.92
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.92
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.9
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.89
2o07_A	304	Spermidine synthase; structural genomics, structur	99.89
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.88
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.87
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.86
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.86
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.85
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.84
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.84
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.8
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.76
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	98.77
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.73
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.39
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.31
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.3
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.28
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.23
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.12
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.08
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.02
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.0
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.88
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.86
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.84
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.84
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.8
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	97.79
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.77
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.74
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	97.73
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.72
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.72
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.67
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.6
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.59
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.58
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.56
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.55
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.54
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	97.54
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.49
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.46
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.45
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.45
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	97.45
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.44
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.44
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.42
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.42
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	97.41
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.38
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.37
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.36
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.33
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.32
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.29
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.28
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.28
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.28
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.27
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.27
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.25
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.25
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.25
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	97.22
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.2
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	97.17
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.17
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.16
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.14
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.11
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.11
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.09
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.08
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.08
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.08
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	97.07
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	97.06
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.06
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.05
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.01
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.01
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.99
3k6r_A	278	Putative transferase PH0793; structural genomics,	96.97
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	96.96
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	96.96
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	96.92
2esr_A	177	Methyltransferase; structural genomics, hypothetic	96.92
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.91
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	96.87
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.86
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	96.82
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	96.81
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	96.8
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	96.79
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	96.76
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.73
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	96.69
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	96.69
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	96.69
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	96.67
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	96.67
2qm3_A	373	Predicted methyltransferase; putative methyltransf	96.66
2b3t_A	276	Protein methyltransferase HEMK; translation termin	96.66
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	96.64
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	96.61
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	96.6
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	96.58
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	96.58
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	96.57
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	96.57
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	96.57
3ocj_A	305	Putative exported protein; structural genomics, PS	96.54
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	96.54
3cvo_A	202	Methyltransferase-like protein of unknown functio;	96.53
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	96.51
3i9f_A	170	Putative type 11 methyltransferase; structural gen	96.48
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.45
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	96.42
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.4
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.39
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.36
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	96.35
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	96.33
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	96.33
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	96.28
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.21
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.21
1ws6_A	171	Methyltransferase; structural genomics, riken stru	96.2
3f4k_A	257	Putative methyltransferase; structural genomics, P	96.17
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.17
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	96.15
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	96.12
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	96.1
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	96.1
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	96.05
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.01
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	96.0
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	95.97
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	95.96
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	95.94
3sso_A	419	Methyltransferase; macrolide, natural product, ros	95.93
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	95.92
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	95.92
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	95.9
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	95.89
2p7i_A	250	Hypothetical protein; putative methyltransferase,	95.89
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.87
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	95.86
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	95.83
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	95.81
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	95.8
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	95.8
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	95.78
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	95.75
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	95.74
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	95.68
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	95.68
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	95.67
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	95.65
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	95.65
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	95.64
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	95.62
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	95.61
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	95.61
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	95.6
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	95.56
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	95.53
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	95.48
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	95.45
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	95.45
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	95.44
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	95.43
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	95.41
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	95.4
1xxl_A	239	YCGJ protein; structural genomics, protein structu	95.4
3lcc_A	235	Putative methyl chloride transferase; halide methy	95.37
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	95.36
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	95.35
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	95.33
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	95.31
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	95.3
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	95.3
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	95.29
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	95.27
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	95.26
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	95.14
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.13
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	95.09
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	95.08
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	95.07
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	95.05
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	95.0
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	94.98
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	94.94
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	94.92
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	94.91
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	94.88
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	94.86
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	94.82
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	94.79
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	94.78
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	94.76
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	94.75
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	94.68
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	94.6
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	94.59
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	94.39
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	94.32
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	94.18
3cc8_A	230	Putative methyltransferase; structural genomics, j	94.14
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	93.82
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	93.8
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	93.73
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	93.67
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	93.53
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	93.48
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	93.22
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	93.11
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	93.1
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	92.94
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	92.48
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	92.48
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	92.37
4gua_A	670	Non-structural polyprotein; viral precursor polypr	92.31
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	92.27
3ege_A	261	Putative methyltransferase from antibiotic biosyn	92.19
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	92.16
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	92.12
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	92.07
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	91.78
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	91.72
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	91.48
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	91.47
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	91.45
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	91.28
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	91.11
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	91.09
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	91.01
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	90.96
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	90.59
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	90.56
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	90.42
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	90.36
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	90.17
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	90.01
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	89.99
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	89.97
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	89.86
2km1_A	136	Protein DRE2; yeast, antiapoptotic, protein bindin	89.72
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	89.48
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	89.27
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	89.13
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	89.01
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	88.9
2h00_A	254	Methyltransferase 10 domain containing protein; st	88.81
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	88.41
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	88.33
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	87.96
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	87.62
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	86.94
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	86.04
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	85.28
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	84.92
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	84.84
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	84.76
3khk_A	544	Type I restriction-modification system methylation	84.22
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	83.53
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	80.68

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=100.00  E-value=1.6e-33  Score=217.73  Aligned_cols=114  Identities=24%  Similarity=0.443  Sum_probs=109.4

Q ss_pred             CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593           3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG   82 (132)
Q Consensus         3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~   82 (132)
                      +++|||++++++||++||++ ++++||+||+|++||   .+++..|||.|||+.|+++|+|||++++|+++++.+.+.+.
T Consensus       134 ~~~dpRv~v~~~Dg~~~l~~-~~~~yDvIi~D~~dp---~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~  209 (294)
T 3o4f_A          134 SYDDPRFKLVIDDGVNFVNQ-TSQTFDVIISDCTDP---IGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAI  209 (294)
T ss_dssp             GGGCTTEEEEESCTTTTTSC-SSCCEEEEEESCCCC---CCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHH
T ss_pred             ccCCCcEEEEechHHHHHhh-ccccCCEEEEeCCCc---CCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHH
Confidence            58999999999999999998 889999999999999   78999999999999999999999999999999999989999


Q ss_pred             HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      .+.++++++|+.|.+|.+.+|+||+|.|+|++||+..+
T Consensus       210 ~~~~~l~~~F~~v~~~~~~vPty~~g~w~f~~as~~~~  247 (294)
T 3o4f_A          210 DSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDNDA  247 (294)
T ss_dssp             HHHHHHHHHCSEEEEEEECCTTSSSSCEEEEEEESCTT
T ss_pred             HHHHHHHhhCCceeeeeeeeccCCCcceeheeEECCCc
Confidence            99999999999999999999999999999999998754

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=99.92  E-value=2.3e-25  Score=177.13  Aligned_cols=114  Identities=14%  Similarity=0.137  Sum_probs=94.4

Q ss_pred             CCCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCC---CCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHH
Q psy4593           6 GYPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRV---VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDC   80 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~---~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~   80 (132)
                      ++|++++++||++||++.  ..++||+||+|++|+...   .+++..||++|||+.|+++|+|||++++|+++++. .+.
T Consensus       261 ~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~-~~~  339 (381)
T 3c6k_A          261 GDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNL-TEA  339 (381)
T ss_dssp             ETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTC-HHH
T ss_pred             ccceeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcc-hhH
Confidence            467999999999999752  346899999999985311   24567899999999999999999999999988876 456


Q ss_pred             HHHHHHHHHhhCCCceE--eEEeccCcCCCceeEEEeecCCCc
Q psy4593          81 VGNTLQHCASVFPRVAY--GATCVPTYPSGQIGFVLGSQLLKQ  121 (132)
Q Consensus        81 ~~~~~~~l~~vF~~v~~--~~~~~p~~~~~~~~f~~as~~~~~  121 (132)
                      +..+.++++++|+.|.+  |.+.+|+||+ .|+|++|||..++
T Consensus       340 ~~~i~~tl~~vF~~v~~~~~~~~VPSy~~-~W~F~~aSK~~~P  381 (381)
T 3c6k_A          340 LSLYEEQLGRLYCPVEFSKEIVCVPSYLE-LWVFYTVWKKAKP  381 (381)
T ss_dssp             HHHHHHHHTTSSSCEEEEEEEECCGGGSS-CEEEEEEEECCC-
T ss_pred             HHHHHHHHHHhCCcceEeeEEEEecCCCC-ceeeeEEECCCCC
Confidence            88999999999999865  4578999986 7999999998763

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.92  E-value=1.8e-24  Score=165.18  Aligned_cols=114  Identities=24%  Similarity=0.447  Sum_probs=105.8

Q ss_pred             CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593           3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG   82 (132)
Q Consensus         3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~   82 (132)
                      .++++|++++++||++|+.. .+++||+|++|+++|   .+++..|++.+||+.++++|+|||+++++.++++.+.+.+.
T Consensus       125 ~~~~~rv~v~~~D~~~~l~~-~~~~fD~Ii~d~~~~---~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~  200 (275)
T 1iy9_A          125 KLDDPRVDVQVDDGFMHIAK-SENQYDVIMVDSTEP---VGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELIT  200 (275)
T ss_dssp             TTTSTTEEEEESCSHHHHHT-CCSCEEEEEESCSSC---CSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHH
T ss_pred             ccCCCceEEEECcHHHHHhh-CCCCeeEEEECCCCC---CCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHH
Confidence            35789999999999999987 678999999999998   57888999999999999999999999999988888888899


Q ss_pred             HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      .+.++++++|+++..|.+.+|+||+|.|+|++||+..+
T Consensus       201 ~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~ask~~~  238 (275)
T 1iy9_A          201 NVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKKYD  238 (275)
T ss_dssp             HHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESSCC
T ss_pred             HHHHHHHHhCCCeEEEEEecCcccCcceEEEEeeCCCC
Confidence            99999999999999999999999999999999998643

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.90  E-value=1.2e-23  Score=161.18  Aligned_cols=111  Identities=29%  Similarity=0.609  Sum_probs=103.9

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      ++++|++++++|+.+++.. .+++||+|++|+++|   .+++..|++.+||+.++++|+|||++++++++++.+.+.+..
T Consensus       129 ~~~~~v~~~~~D~~~~l~~-~~~~fD~Ii~d~~~~---~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~  204 (283)
T 2i7c_A          129 YEDKRVNVFIEDASKFLEN-VTNTYDVIIVDSSDP---IGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKN  204 (283)
T ss_dssp             GGSTTEEEEESCHHHHHHH-CCSCEEEEEEECCCT---TTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHH
T ss_pred             cCCCcEEEEECChHHHHHh-CCCCceEEEEcCCCC---CCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHH
Confidence            4589999999999999977 578999999999998   677889999999999999999999999999898888888999


Q ss_pred             HHHHHHhhCCCceEeEEeccCcCCCceeEEEeecC
Q psy4593          84 TLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQL  118 (132)
Q Consensus        84 ~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~  118 (132)
                      +.++++++|+++.+|...+|+|++|.|||++||+.
T Consensus       205 ~~~~l~~~F~~v~~~~~~vP~y~~g~~g~~~~s~~  239 (283)
T 2i7c_A          205 MIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKT  239 (283)
T ss_dssp             HHHHHHTTCSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred             HHHHHHHHCCceEEEEEEcCCcCCCcEEEEEEeCC
Confidence            99999999999999999999999999999999987

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.89  E-value=3.8e-23  Score=160.90  Aligned_cols=115  Identities=30%  Similarity=0.589  Sum_probs=94.0

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      ++++|++++++|+.+++.. .+++||+|++|+++|   .+++..|++.+||+.++++|+|||+++++.+++|.+.+.+..
T Consensus       159 ~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii~d~~~~---~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~  234 (314)
T 2b2c_A          159 FSHPKLDLFCGDGFEFLKN-HKNEFDVIITDSSDP---VGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAH  234 (314)
T ss_dssp             GGCTTEEEECSCHHHHHHH-CTTCEEEEEECCC----------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHH
T ss_pred             cCCCCEEEEEChHHHHHHh-cCCCceEEEEcCCCC---CCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHH
Confidence            3589999999999999977 678999999999998   677788999999999999999999999999899888888999


Q ss_pred             HHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCCcc
Q psy4593          84 TLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQH  122 (132)
Q Consensus        84 ~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~~~  122 (132)
                      +.++++++|+++.++.+.+|+|++|.|||++||+.+...
T Consensus       235 ~~~~l~~vF~~v~~~~~~iP~~~~g~~g~~~ask~~~~~  273 (314)
T 2b2c_A          235 LVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKNANRD  273 (314)
T ss_dssp             HHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESSTTCC
T ss_pred             HHHHHHHHCCcceEEEEEecCcCCCceEEEEEeCCCccc
Confidence            999999999999999999999999999999999885433

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.89  E-value=6.2e-23  Score=158.92  Aligned_cols=117  Identities=37%  Similarity=0.685  Sum_probs=96.7

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      ++++|++++++||.+++.. .+++||+|++|+++|   .+++..+++.+||+.++++|+|||+++++.+++|.+....+.
T Consensus       146 ~~~~rv~v~~~Da~~~l~~-~~~~fD~Ii~d~~~~---~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~  221 (304)
T 2o07_A          146 YSSSKLTLHVGDGFEFMKQ-NQDAFDVIITDSSDP---MGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKE  221 (304)
T ss_dssp             GGCTTEEEEESCHHHHHHT-CSSCEEEEEEECC--------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHH
T ss_pred             cCCCcEEEEECcHHHHHhh-CCCCceEEEECCCCC---CCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHH
Confidence            4689999999999999987 678999999999998   577778999999999999999999999998888888888899


Q ss_pred             HHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCCcccc
Q psy4593          84 TLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHAN  124 (132)
Q Consensus        84 ~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~~~~~  124 (132)
                      +.++++++|+++.++.+.+|+|++|.|||++||+.+...+.
T Consensus       222 ~~~~l~~~f~~v~~~~~~vP~~~~g~~g~~~as~~~~~~~~  262 (304)
T 2o07_A          222 MRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNPSTNFQ  262 (304)
T ss_dssp             HHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESSTTCCSS
T ss_pred             HHHHHHHhCCCceeEEEEeccccCcceEEEEEeCCcccccc
Confidence            99999999999999999999999999999999988553433

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.88  E-value=1.5e-22  Score=156.07  Aligned_cols=114  Identities=16%  Similarity=0.330  Sum_probs=97.0

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      ++++|++++++|+.+++.. .+++||+|++|+++|+  .+++..|++.+||+.++++|+|||+++++.++++.+.+.+..
T Consensus       141 ~~~~~v~~~~~D~~~~l~~-~~~~fD~Ii~d~~~~~--~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~  217 (296)
T 1inl_A          141 FDDPRAEIVIANGAEYVRK-FKNEFDVIIIDSTDPT--AGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKL  217 (296)
T ss_dssp             GGCTTEEEEESCHHHHGGG-CSSCEEEEEEEC------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHH
T ss_pred             cCCCceEEEECcHHHHHhh-CCCCceEEEEcCCCcc--cCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHH
Confidence            4579999999999999987 5678999999999885  567788999999999999999999999999888888888999


Q ss_pred             HHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          84 TLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        84 ~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      +.++++++|+++..|.+.+|+||+|.|+|++||+..+
T Consensus       218 ~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~as~~~~  254 (296)
T 1inl_A          218 AYRRISKVFPITRVYLGFMTTYPSGMWSYTFASKGID  254 (296)
T ss_dssp             HHHHHHHHCSEEEEEEEECTTSTTSEEEEEEEESSCC
T ss_pred             HHHHHHHHCCceEEEEeecCccCCCceEEEEecCCCC
Confidence            9999999999999999999999999999999998644

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.87  E-value=3.7e-22  Score=155.54  Aligned_cols=113  Identities=28%  Similarity=0.586  Sum_probs=104.0

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      ++++|++++++|+.+++.. .+++||+|++|+++|   .+++..+++.+||+.++++|+|||+++++.++++.+.+.+..
T Consensus       167 ~~~~~v~~~~~D~~~~l~~-~~~~fDvIi~d~~~p---~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~  242 (321)
T 2pt6_A          167 YEDKRVNVFIEDASKFLEN-VTNTYDVIIVDSSDP---IGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKN  242 (321)
T ss_dssp             GGSTTEEEEESCHHHHHHH-CCSCEEEEEEECCCS---SSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHH
T ss_pred             cCCCcEEEEEccHHHHHhh-cCCCceEEEECCcCC---CCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHH
Confidence            4579999999999999976 567899999999998   677788999999999999999999999998888888888999


Q ss_pred             HHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          84 TLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        84 ~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      +.++++++|+++..|...+|+|++|.|+|++||+..+
T Consensus       243 ~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~as~~~~  279 (321)
T 2pt6_A          243 MIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKTDT  279 (321)
T ss_dssp             HHHHHHTTCSEEEEEEEECTTSGGGEEEEEEEESSTT
T ss_pred             HHHHHHHHCCCeEEEEEEeccccCceEEEEEeeCCCC
Confidence            9999999999999999999999999999999998754

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.86  E-value=1.9e-21  Score=150.28  Aligned_cols=114  Identities=26%  Similarity=0.499  Sum_probs=96.6

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      +.++|++++++|+.+++....+++||+|++|.++|   .++...|++.+||+.++++|+|||+++++.++++.+......
T Consensus       146 ~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~---~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~  222 (304)
T 3bwc_A          146 LADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDP---AGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEK  222 (304)
T ss_dssp             GGCTTEEEEESCHHHHHHSSCTTCEEEEEEECC------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHH
T ss_pred             cCCCcEEEEECcHHHHHHhccCCceeEEEECCCCc---cccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHH
Confidence            46899999999999998753357899999999998   678889999999999999999999999998888888888999


Q ss_pred             HHHHHHhh-CCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          84 TLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        84 ~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      +.++++++ |+.+..+...+|+||+|.|+|++||+.++
T Consensus       223 ~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~~as~~~~  260 (304)
T 3bwc_A          223 MSRFIRETGFASVQYALMHVPTYPCGSIGTLVCSKKAG  260 (304)
T ss_dssp             HHHHHHHHTCSEEEEEECCCTTSTTSCCEEEEEESSSS
T ss_pred             HHHHHHhCCCCcEEEEEeecccccCcceEEEEEeCCcc
Confidence            99999999 99999999999999999999999999754

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.85  E-value=1.5e-21  Score=151.55  Aligned_cols=115  Identities=17%  Similarity=0.311  Sum_probs=99.4

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCC-CChHHHH
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLW-YSLDCVG   82 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~-~~~~~~~   82 (132)
                      ++++|++++++|+.+++.. .+++||+|++|++++....+++..|++.+||+.++++|+|||++++|.++++ .+.+.++
T Consensus       129 ~~~~~v~~~~~D~~~~l~~-~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~  207 (314)
T 1uir_A          129 FDDPRAVLVIDDARAYLER-TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHP  207 (314)
T ss_dssp             GGCTTEEEEESCHHHHHHH-CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHH
T ss_pred             ccCCceEEEEchHHHHHHh-cCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHH
Confidence            5689999999999999976 5788999999999982001667889999999999999999999999987777 5667889


Q ss_pred             HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      .+.++++++|+++.++.+.+|+| +|.|+|++||+..+
T Consensus       208 ~~~~~l~~~F~~v~~~~~~vP~~-~g~~~~~~as~~~~  244 (314)
T 1uir_A          208 VVHRTVREAFRYVRSYKNHIPGF-FLNFGFLLASDAFD  244 (314)
T ss_dssp             HHHHHHHTTCSEEEEEEEEEGGG-TEEEEEEEEESSSC
T ss_pred             HHHHHHHHHCCceEEEEEecCCC-CCeEEEEEEECCCC
Confidence            99999999999999999999999 77999999998743

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.84  E-value=7.1e-21  Score=145.46  Aligned_cols=108  Identities=23%  Similarity=0.372  Sum_probs=96.1

Q ss_pred             CCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHH
Q psy4593           5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT   84 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~   84 (132)
                      .++|++++++||.+++..  +++||+|++|+++|   .+++..+++.+||+.++++|+|||+++++.++++.+.+.++.+
T Consensus       132 ~~~~v~~~~~D~~~~l~~--~~~fD~Ii~d~~~~---~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~  206 (281)
T 1mjf_A          132 KHEKAKLTIGDGFEFIKN--NRGFDVIIADSTDP---VGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISA  206 (281)
T ss_dssp             CCSSEEEEESCHHHHHHH--CCCEEEEEEECCCC---C-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHH
T ss_pred             CCCcEEEEECchHHHhcc--cCCeeEEEECCCCC---CCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHH
Confidence            578999999999999876  56899999999998   5778899999999999999999999999988888888889999


Q ss_pred             HHHHHhhCCCceEeEEeccCcCCCceeEEEeecC
Q psy4593          85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQL  118 (132)
Q Consensus        85 ~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~  118 (132)
                      .++++++|+++..|...+|+| +|.|+|++||+.
T Consensus       207 ~~~l~~~f~~v~~~~~~vP~~-~g~~~~~~as~~  239 (281)
T 1mjf_A          207 YKEMKKVFDRVYYYSFPVIGY-ASPWAFLVGVKG  239 (281)
T ss_dssp             HHHHHHHCSEEEEEEECCTTS-SSSEEEEEEEES
T ss_pred             HHHHHHHCCceEEEEEecCCC-CceEEEEEeeCC
Confidence            999999999999999999999 779999999997

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.84  E-value=2.2e-20  Score=146.44  Aligned_cols=112  Identities=38%  Similarity=0.733  Sum_probs=100.1

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      ++++|++++++|+.+++....+++||+|++|+++|   .+++..+++.+||+.++++|+|||+++++++++|.+...+..
T Consensus       171 l~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p---~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~  247 (334)
T 1xj5_A          171 YEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDP---IGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIED  247 (334)
T ss_dssp             GGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCT---TSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHH
T ss_pred             cCCCcEEEEECCHHHHHHhccCCCccEEEECCCCc---cCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHH
Confidence            46799999999999998763357899999999998   566677899999999999999999999998899988888899


Q ss_pred             HHHHHHhhCCC-ceEeEEeccCcCCCceeEEEeecC
Q psy4593          84 TLQHCASVFPR-VAYGATCVPTYPSGQIGFVLGSQL  118 (132)
Q Consensus        84 ~~~~l~~vF~~-v~~~~~~~p~~~~~~~~f~~as~~  118 (132)
                      +.++++++|+. +.++.+.+|+|+++.|||++||+.
T Consensus       248 ~~~~l~~~F~~~~~~~~~~vP~y~~g~~gf~~as~~  283 (334)
T 1xj5_A          248 IVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTE  283 (334)
T ss_dssp             HHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEECS
T ss_pred             HHHHHHHhCccccceEEEeCCcccCCceEEEEcccC
Confidence            99999999995 566678999999999999999986

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.80  E-value=1.2e-19  Score=141.46  Aligned_cols=111  Identities=19%  Similarity=0.189  Sum_probs=93.7

Q ss_pred             CCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHH
Q psy4593           5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT   84 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~   84 (132)
                      .++|++++++||++|++...+++||+||+|++++   ..++.+|++.+||+.|+++|+|||++++|..+. .....++.+
T Consensus       137 ~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~---~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~-~~~~~~~~~  212 (317)
T 3gjy_A          137 RAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG---AITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH-SDLRGAKSE  212 (317)
T ss_dssp             CTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT---SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC-TTCHHHHHH
T ss_pred             CCCceEEEECcHHHHHhhccCCCCCEEEECCCCc---cccchhhhHHHHHHHHHHhcCCCcEEEEEecCC-cchHHHHHH
Confidence            4789999999999999873467999999999998   577889999999999999999999999997553 234678899


Q ss_pred             HHHHHhhCCCceEeEEeccCcCCCceeE--EEeecCCC
Q psy4593          85 LQHCASVFPRVAYGATCVPTYPSGQIGF--VLGSQLLK  120 (132)
Q Consensus        85 ~~~l~~vF~~v~~~~~~~p~~~~~~~~f--~~as~~~~  120 (132)
                      +++|+++|++|.++....|.++ ..||.  ++||+.+-
T Consensus       213 ~~tL~~vF~~v~~~~~~~~~~g-~~~gN~Vl~As~~pl  249 (317)
T 3gjy_A          213 LAGMMEVFEHVAVIADPPMLKG-RRYGNIILMGSDTEF  249 (317)
T ss_dssp             HHHHHHHCSEEEEEECHHHHTT-SSCEEEEEEEESSCC
T ss_pred             HHHHHHHCCceEEEEecCCCCC-CcCceEEEEEECCCC
Confidence            9999999999999877777664 24444  88998764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.76  E-value=9e-19  Score=133.04  Aligned_cols=98  Identities=14%  Similarity=0.087  Sum_probs=87.9

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      ++++|++++++||++|+     ++||+|++|+.||   .         .||+.|+++|+|||+++++.++++.+...+..
T Consensus       121 ~~~~rv~~~~~D~~~~~-----~~fD~Ii~d~~dp---~---------~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~  183 (262)
T 2cmg_A          121 KNNKNFTHAKQLLDLDI-----KKYDLIFCLQEPD---I---------HRIDGLKRMLKEDGVFISVAKHPLLEHVSMQN  183 (262)
T ss_dssp             HTCTTEEEESSGGGSCC-----CCEEEEEESSCCC---H---------HHHHHHHTTEEEEEEEEEEEECTTTCHHHHHH
T ss_pred             cCCCeEEEEechHHHHH-----hhCCEEEECCCCh---H---------HHHHHHHHhcCCCcEEEEEcCCcccCHHHHHH
Confidence            46899999999999987     5799999998887   2         29999999999999999998888877778999


Q ss_pred             HHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          84 TLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        84 ~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      +.++++++|+++..+...+|+  +|.|+|++||+..+
T Consensus       184 ~~~~l~~~F~~~~~~~~~vP~--~g~~~~~~as~~~~  218 (262)
T 2cmg_A          184 ALKNMGGVFSVAMPFVAPLRI--LSNKGYIYASFKTH  218 (262)
T ss_dssp             HHHHHHTTCSEEEEECCTTCT--TCCEEEEEEESSCC
T ss_pred             HHHHHHHhCCceEEEEEccCC--CcccEEEEeeCCCC
Confidence            999999999999999999999  67999999999754

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=98.77  E-value=4.1e-08  Score=76.07  Aligned_cols=98  Identities=12%  Similarity=0.075  Sum_probs=72.6

Q ss_pred             CCCCc--EEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593           5 RGYPV--LSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG   82 (132)
Q Consensus         5 ~d~rv--~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~   82 (132)
                      +++++  .++++|+++.|.+....++|+|+.|.|.|.    -.+.|+|.++|+.++++|+|||++++++..        .
T Consensus       162 ~~~~v~L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~----kNPeLWs~e~f~~l~~~~~pgg~laTYtaa--------g  229 (308)
T 3vyw_A          162 EGERLSLKVLLGDARKRIKEVENFKADAVFHDAFSPY----KNPELWTLDFLSLIKERIDEKGYWVSYSSS--------L  229 (308)
T ss_dssp             ECSSEEEEEEESCHHHHGGGCCSCCEEEEEECCSCTT----TSGGGGSHHHHHHHHTTEEEEEEEEESCCC--------H
T ss_pred             cCCcEEEEEEechHHHHHhhhcccceeEEEeCCCCcc----cCcccCCHHHHHHHHHHhCCCcEEEEEeCc--------H
Confidence            44555  578899999998844458999999999993    344799999999999999999999998644        3


Q ss_pred             HHHHHHHhh-CCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          83 NTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        83 ~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      .+.+.|+++ |. |.    .+|-++ +-..++.|+...+
T Consensus       230 ~VRR~L~~aGF~-V~----k~~G~g-~KReml~A~~~~~  262 (308)
T 3vyw_A          230 SVRKSLLTLGFK-VG----SSREIG-RKRKGTVASLKAP  262 (308)
T ss_dssp             HHHHHHHHTTCE-EE----EEECC----CEEEEEESSSC
T ss_pred             HHHHHHHHCCCE-EE----ecCCCC-CCCceeEEecCCC
Confidence            455677776 54 33    356664 4567888887543

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.73  E-value=2.1e-08  Score=75.77  Aligned_cols=95  Identities=14%  Similarity=0.163  Sum_probs=68.4

Q ss_pred             CCcEEEEccHHHHhcCCCC---CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVK---NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~---~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      .+++++.+|+++.+.....   ..||+|++|.+.|   .. ...|++.+||+.++++|+|||++++++..        ..
T Consensus       150 ~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp---~~-~p~lw~~~~l~~l~~~L~pGG~l~tysaa--------~~  217 (257)
T 2qy6_A          150 VTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAP---AK-NPDMWTQNLFNAMARLARPGGTLATFTSA--------GF  217 (257)
T ss_dssp             EEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCT---TT-CGGGCCHHHHHHHHHHEEEEEEEEESCCB--------HH
T ss_pred             eEEEEEECcHHHHHhhcccccCCeEEEEEECCCCc---cc-ChhhcCHHHHHHHHHHcCCCcEEEEEeCC--------HH
Confidence            3567999999999987322   2799999999988   22 33799999999999999999999987533        23


Q ss_pred             HHHHHHhh-CCCceEeEEeccCcCCCceeEEEeecCC
Q psy4593          84 TLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQLL  119 (132)
Q Consensus        84 ~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~~  119 (132)
                      +.+.|+++ |. |.    .+|.++ +-..++.|.+..
T Consensus       218 vrr~L~~aGF~-v~----~~~g~~-~kr~m~~a~~~~  248 (257)
T 2qy6_A          218 VRRGLQEAGFT-MQ----KRKGFG-RKREMLCGVMEQ  248 (257)
T ss_dssp             HHHHHHHHTEE-EE----EECCST-TCCCEEEEEEC-
T ss_pred             HHHHHHHCCCE-EE----eCCCCC-CCCceEEEEecC
Confidence            45566665 54 22    356664 355667776654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.39  E-value=3.5e-06  Score=62.39  Aligned_cols=107  Identities=18%  Similarity=0.131  Sum_probs=64.0

Q ss_pred             CCcEEEEccHHHHhcCCC-CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCC-------CCh
Q psy4593           7 YPVLSARQDCTDFMSGPV-KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLW-------YSL   78 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~-~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~-------~~~   78 (132)
                      ++++++.+|+.+++.... .++||+|++|...+          -..++++.+.+.|+|||++++......       ...
T Consensus       115 ~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~~----------~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~  184 (248)
T 3tfw_A          115 QRVTLREGPALQSLESLGECPAFDLIFIDADKP----------NNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSAD  184 (248)
T ss_dssp             TTEEEEESCHHHHHHTCCSCCCCSEEEECSCGG----------GHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCC
T ss_pred             CcEEEEEcCHHHHHHhcCCCCCeEEEEECCchH----------HHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccc
Confidence            589999999999987732 24899999987422          136799999999999999997531111       011


Q ss_pred             ---HHHHHHHHHHHhhCCCceEeEEeccCcC-CCceeEEEeecCCCccccCC
Q psy4593          79 ---DCVGNTLQHCASVFPRVAYGATCVPTYP-SGQIGFVLGSQLLKQHANSH  126 (132)
Q Consensus        79 ---~~~~~~~~~l~~vF~~v~~~~~~~p~~~-~~~~~f~~as~~~~~~~~~~  126 (132)
                         ..++.+.+.+.+ -+.+.  .+.+|..+ .+.=||.+|.+....+++..
T Consensus       185 ~~~~~~~~~~~~l~~-~~~~~--~~~l~~~g~~~~DG~~i~~~~~~~~~~~~  233 (248)
T 3tfw_A          185 ERVQGVRQFIEMMGA-EPRLT--ATALQTVGTKGWDGFTLAWVNAAENLYFQ  233 (248)
T ss_dssp             HHHHHHHHHHHHHHH-CTTEE--EEEEEECSTTCSEEEEEEEECCC------
T ss_pred             hHHHHHHHHHHHHhh-CCCEE--EEEeecCCCCCCCeeEEEEEeCCcchHhH
Confidence               123444444433 23333  22332222 13478999988877665544

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.31  E-value=2e-06  Score=63.97  Aligned_cols=98  Identities=8%  Similarity=0.072  Sum_probs=63.9

Q ss_pred             CCCcEEEEccHHHHhcCCC-----CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec----CCCCC
Q psy4593           6 GYPVLSARQDCTDFMSGPV-----KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA----GTLWY   76 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~-----~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~----~~~~~   76 (132)
                      +++++++.+|+.+++....     .++||+|++|....          ...++++.+.+.|+|||++++..    +....
T Consensus       130 ~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~----------~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~  199 (247)
T 1sui_A          130 DHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD----------NYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVA  199 (247)
T ss_dssp             GGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST----------THHHHHHHHHHHBCTTCCEEEECTTGGGGGGC
T ss_pred             CCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH----------HHHHHHHHHHHhCCCCeEEEEecCCcCCcccC
Confidence            3589999999999876421     47899999996422          13789999999999999998742    21111


Q ss_pred             C---------hHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeec
Q psy4593          77 S---------LDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ  117 (132)
Q Consensus        77 ~---------~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~  117 (132)
                      .         ....+.+.+..+..+.+..+..+.+|.+.    |++++.+
T Consensus       200 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~lp~~d----G~~l~~k  245 (247)
T 1sui_A          200 PPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGD----GITICRR  245 (247)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHHHHHHTCTTBCCEEECSTT----CEEEECB
T ss_pred             CCccchhhhhhHHHHHHHHHHHHHhhCCCeEEEEEecCC----ccEEEEE
Confidence            1         11223344444455666666667788753    3666654

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.30  E-value=9.7e-07  Score=65.07  Aligned_cols=98  Identities=13%  Similarity=0.115  Sum_probs=64.1

Q ss_pred             CCCcEEEEccHHHHhcCC-----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec----CCCCC
Q psy4593           6 GYPVLSARQDCTDFMSGP-----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA----GTLWY   76 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~-----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~----~~~~~   76 (132)
                      ++|++++.+|+.+++...     ..++||+|++|...+          -..++++.+.+.|+|||+++...    +....
T Consensus       121 ~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~----------~~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~  190 (237)
T 3c3y_A          121 EHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP----------NYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQ  190 (237)
T ss_dssp             GGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG----------GHHHHHHHHHHHEEEEEEEEEECTTGGGGGGS
T ss_pred             CCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH----------HHHHHHHHHHHhcCCCeEEEEecCCcCCccCC
Confidence            357999999999987642     147899999996322          14789999999999999999742    11111


Q ss_pred             C--------hHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeec
Q psy4593          77 S--------LDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ  117 (132)
Q Consensus        77 ~--------~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~  117 (132)
                      .        ....+.+.+..+..+.+..+..+.+|.+.    |++++.+
T Consensus       191 ~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~~~~lp~~d----G~~~~~~  235 (237)
T 3c3y_A          191 PESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGD----GITFCRR  235 (237)
T ss_dssp             CGGGSCGGGHHHHHHHHHHHHHHHHCTTEEEEEECSTT----CEEEEEE
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCCCeEEEEEEeCC----ceEEEEE
Confidence            1        11233333444445555666677788752    4666654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.28  E-value=7.2e-06  Score=59.97  Aligned_cols=99  Identities=15%  Similarity=0.067  Sum_probs=64.0

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC-------CC-CC
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT-------LW-YS   77 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~-------~~-~~   77 (132)
                      ++|++++.+|+.+++....+++||+|++|..-+          -..++++.+.+.|+|||++++....       +. .+
T Consensus       108 ~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~~~----------~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~  177 (221)
T 3dr5_A          108 PSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPM----------DLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKD  177 (221)
T ss_dssp             GGGEEEECSCHHHHGGGSCTTCEEEEEECCCTT----------THHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCC
T ss_pred             cCcEEEEEcCHHHHHHHhcCCCcCeEEEcCcHH----------HHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCC
Confidence            368999999999999773368999999996432          1257999999999999999984211       11 11


Q ss_pred             hH--HHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCCc
Q psy4593          78 LD--CVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQ  121 (132)
Q Consensus        78 ~~--~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~~  121 (132)
                      ..  .++++.+.+++. +.+.  .+.+|..    -|++++.+..+.
T Consensus       178 ~~~~~~~~~~~~l~~~-~~~~--~~~lp~g----dGl~~~~~~~~~  216 (221)
T 3dr5_A          178 RDTQAARDADEYIRSI-EGAH--VARLPLG----AGLTVVTKALEH  216 (221)
T ss_dssp             HHHHHHHHHHHHHTTC-TTEE--EEEESST----TCEEEEEECCCC
T ss_pred             hHHHHHHHHHHHHhhC-CCee--EEEeecc----chHHHHHHHHHh
Confidence            11  224444444332 4444  3456653    246677666553

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.23  E-value=2.7e-06  Score=61.00  Aligned_cols=95  Identities=18%  Similarity=0.127  Sum_probs=61.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCC-------hH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYS-------LD   79 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~-------~~   79 (132)
                      ++++++.+|+.+++.. .++ ||+|++|....          ...++++.+++.|+|||++++... .|..       ..
T Consensus       108 ~~v~~~~~d~~~~~~~-~~~-fD~v~~~~~~~----------~~~~~l~~~~~~LkpgG~lv~~~~-~~~g~~~~~~~~~  174 (210)
T 3c3p_A          108 DRVELQVGDPLGIAAG-QRD-IDILFMDCDVF----------NGADVLERMNRCLAKNALLIAVNA-LRRGSVAESHEDP  174 (210)
T ss_dssp             GGEEEEESCHHHHHTT-CCS-EEEEEEETTTS----------CHHHHHHHHGGGEEEEEEEEEESS-SSCC---------
T ss_pred             ceEEEEEecHHHHhcc-CCC-CCEEEEcCChh----------hhHHHHHHHHHhcCCCeEEEEECc-cccCcccCcccch
Confidence            5799999999999876 456 99999995322          247899999999999999997421 1111       11


Q ss_pred             HHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecC
Q psy4593          80 CVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQL  118 (132)
Q Consensus        80 ~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~  118 (132)
                      ..+.+.+-++..+.+..+....+|..    .||.++.+.
T Consensus       175 ~~~~~~~~~~~l~~~~~~~~~~~p~~----~G~~~~~~~  209 (210)
T 3c3p_A          175 ETAALREFNHHLSRRRDFFTTIVPVG----NGVLLGYRL  209 (210)
T ss_dssp             ---CCCHHHHHHTTCTTEEEEEECST----TCEEEEEEC
T ss_pred             HHHHHHHHHHHHhhCCCeEEEEEecC----CceEEEEeC
Confidence            12222333344455555656667753    467777653

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.12  E-value=1e-05  Score=59.82  Aligned_cols=102  Identities=15%  Similarity=0.116  Sum_probs=61.1

Q ss_pred             CCcEEEEccHHHHhcCC----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec----CCC----
Q psy4593           7 YPVLSARQDCTDFMSGP----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA----GTL----   74 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~----~~~----   74 (132)
                      ++++++.+|+.+++...    ..++||+|++|...+          -..++++.+.+.|+|||++++..    +..    
T Consensus       112 ~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~~----------~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~  181 (242)
T 3r3h_A          112 HKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKT----------NYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPN  181 (242)
T ss_dssp             TTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCGG----------GHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTT
T ss_pred             CcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCChH----------HhHHHHHHHHHhcCCCeEEEEECCccCCcccCcc
Confidence            68999999999988652    047899999997422          13578999999999999999742    110    


Q ss_pred             CCC--hHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCC-CccccC
Q psy4593          75 WYS--LDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLL-KQHANS  125 (132)
Q Consensus        75 ~~~--~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~-~~~~~~  125 (132)
                      ...  ...++.+.+.+.+. +.+.  .+.+|..    -|++++.+.. .+++.+
T Consensus       182 ~~~~~~~~~~~~~~~l~~~-~~~~--~~~lp~~----dG~~~~~k~~~~~~~~~  228 (242)
T 3r3h_A          182 DTSGQTREIKKLNQVIKND-SRVF--VSLLAIA----DGMFLVQPIAENLYFQS  228 (242)
T ss_dssp             CCCHHHHHHHHHHHHHHTC-CSEE--EEEESSS----SCEEEEEEC--------
T ss_pred             ccChHHHHHHHHHHHHhhC-CCEE--EEEEEcc----CceEEEEEcCCCcchhh
Confidence            011  12244455555443 4443  3445652    4577776643 444444

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.08  E-value=1.2e-05  Score=58.74  Aligned_cols=53  Identities=15%  Similarity=0.245  Sum_probs=44.0

Q ss_pred             CCcEEEEccHHHHhc-CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMS-GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~-~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+++. . .+++||+|++|...+          -..++++.+++.|+|||++++.
T Consensus       122 ~~v~~~~~d~~~~~~~~-~~~~fD~V~~~~~~~----------~~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          122 NQVRIIEGNALEQFENV-NDKVYDMIFIDAAKA----------QSKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             TTEEEEESCGGGCHHHH-TTSCEEEEEEETTSS----------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CcEEEEECCHHHHHHhh-ccCCccEEEEcCcHH----------HHHHHHHHHHHhcCCCeEEEEe
Confidence            589999999999876 5 357899999996433          1467999999999999999983

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.02  E-value=4.2e-06  Score=61.57  Aligned_cols=61  Identities=11%  Similarity=-0.020  Sum_probs=47.4

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcc-cccHHHHHHHHHhcCCCcEEEE
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAES-LFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~-L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ..+++++.+|+.+.+....+.+||.|+.|.+..   .....+ .....|++.++|+|||||+++.
T Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~---~~~~~~~~~~~~~~~e~~rvLkPGG~l~f  168 (236)
T 3orh_A          107 THKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL---SEETWHTHQFNFIKNHAFRLLKPGGVLTY  168 (236)
T ss_dssp             SSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC---BGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             CCceEEEeehHHhhcccccccCCceEEEeeeec---ccchhhhcchhhhhhhhhheeCCCCEEEE
Confidence            467889999999988765678999999998754   222223 3346788999999999999986

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.00  E-value=2e-05  Score=56.75  Aligned_cols=54  Identities=17%  Similarity=0.165  Sum_probs=42.9

Q ss_pred             CCcEEEEccHHHHhcCC---CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGP---VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~---~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+++...   ...+||+|++|...+          ...++++.+++.|+|||++++.
T Consensus       110 ~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~----------~~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          110 DRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ----------NNPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             TTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG----------GHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH----------HHHHHHHHHHHhcCCCcEEEEe
Confidence            57999999999876542   125799999997522          2368999999999999999975

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.88  E-value=3.2e-05  Score=56.51  Aligned_cols=97  Identities=13%  Similarity=0.049  Sum_probs=61.2

Q ss_pred             CCcEEEEccHHHHhcCC--CC--CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCC-------
Q psy4593           7 YPVLSARQDCTDFMSGP--VK--NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLW-------   75 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~--~~--~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~-------   75 (132)
                      ++++++.+|+.+++...  .+  ++||+|++|...+          -..++++.+.+.|+|||++++......       
T Consensus       124 ~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~~----------~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~  193 (232)
T 3cbg_A          124 EKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKR----------NYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVD  193 (232)
T ss_dssp             GGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCGG----------GHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSS
T ss_pred             CcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCHH----------HHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcc
Confidence            57999999998876542  12  6899999996422          136799999999999999997421110       


Q ss_pred             CChHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeec
Q psy4593          76 YSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ  117 (132)
Q Consensus        76 ~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~  117 (132)
                      ...+..+.+.+-.+....+..+..+.+|...    |+.++.+
T Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~d----G~~~~~~  231 (232)
T 3cbg_A          194 PQEAQTQVLQQFNRDLAQDERVRISVIPLGD----GMTLALK  231 (232)
T ss_dssp             CCSHHHHHHHHHHHHHTTCTTEEEEEECSBT----CEEEEEE
T ss_pred             cCChHHHHHHHHHHHHhhCCCeEEEEEEcCC----eEEEEEe
Confidence            0122333333444444555555556677652    3555543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.86  E-value=3e-05  Score=55.86  Aligned_cols=54  Identities=19%  Similarity=0.242  Sum_probs=42.7

Q ss_pred             CCcEEEEccHHHHhcCCC----CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPV----KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~----~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+.+....    .++||+|++|....          -..++++.+.+.|+|||++++.
T Consensus       121 ~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~~----------~~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          121 HKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKE----------NCSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             TTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCST----------THHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCCHH----------HHHHHHHHHHHHcCCCeEEEEE
Confidence            689999999998865421    16899999986422          1368999999999999999984

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.84  E-value=0.00011  Score=57.07  Aligned_cols=99  Identities=10%  Similarity=0.085  Sum_probs=59.4

Q ss_pred             CCCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccc-----cHHHHHHHHHhcCCCcEEEE-ecCCCCCC
Q psy4593           6 GYPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLF-----QASYFELMSRALRPGGIVCS-QAGTLWYS   77 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~-----t~eF~~~~~~~L~p~Gil~~-~~~~~~~~   77 (132)
                      +.+++++.+|+.+++...  ..++||+||+|.+--  +......++     -.++++.+.+.|+|||++++ ...+....
T Consensus       202 ~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~--~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~  279 (332)
T 2igt_A          202 QAPIRWICEDAMKFIQREERRGSTYDIILTDPPKF--GRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRAS  279 (332)
T ss_dssp             TSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSE--EECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSC
T ss_pred             ccceEEEECcHHHHHHHHHhcCCCceEEEECCccc--cCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCC
Confidence            346999999999998531  146899999997421  011111111     25789999999999999655 33343334


Q ss_pred             hHHHHHHHH-HHHhhCCCceEeEEeccCcC
Q psy4593          78 LDCVGNTLQ-HCASVFPRVAYGATCVPTYP  106 (132)
Q Consensus        78 ~~~~~~~~~-~l~~vF~~v~~~~~~~p~~~  106 (132)
                      ...+..+++ .+++.-..+.......|...
T Consensus       280 ~~~~~~~l~~a~~~~g~~v~~~e~~~p~~~  309 (332)
T 2igt_A          280 FYSMHELMRETMRGAGGVVASGELVIREAG  309 (332)
T ss_dssp             HHHHHHHHHHHTTTSCSEEEEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence            444554444 33333334444555566553

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.84  E-value=3.4e-05  Score=56.31  Aligned_cols=101  Identities=15%  Similarity=0.184  Sum_probs=60.8

Q ss_pred             CCcEEEEccHHHHhcCC-------------C-C-CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGP-------------V-K-NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~-------------~-~-~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++++.+|+.+++...             . + ++||+|++|...+          -..++++.+++.|+|||++++..
T Consensus       112 ~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~----------~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          112 NKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE----------NYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             GGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG----------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHH----------HHHHHHHHHHHHcCCCeEEEEEc
Confidence            46899999999876531             0 2 6899999985322          12588999999999999999853


Q ss_pred             ----CC---CCCChHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCCc
Q psy4593          72 ----GT---LWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQ  121 (132)
Q Consensus        72 ----~~---~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~~  121 (132)
                          +.   +.........+.+-......+..+....+|..+|    +.++.+..+.
T Consensus       182 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g----~~~~~~~~~~  234 (239)
T 2hnk_A          182 VLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIADG----VSLVRKRLEH  234 (239)
T ss_dssp             SSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECSTTC----EEEEEECCCC
T ss_pred             cccCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEEcCCc----eEeeeehhhc
Confidence                11   1111122222222222233333344556777643    6677666553

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.80  E-value=4.5e-05  Score=55.55  Aligned_cols=81  Identities=15%  Similarity=0.133  Sum_probs=57.6

Q ss_pred             CCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT   84 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~   84 (132)
                      ++++++.+|+.+.+.. ..+++||.|++...+|+.-. .....+...+|++.+++.|+|||++.+.+..    ......+
T Consensus        84 ~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~----~~~~~~~  159 (218)
T 3dxy_A           84 SNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW----EPYAEHM  159 (218)
T ss_dssp             SSEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC----HHHHHHH
T ss_pred             CcEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC----HHHHHHH
Confidence            4699999999998653 25679999999887875211 1223567789999999999999999886422    2334445


Q ss_pred             HHHHHhh
Q psy4593          85 LQHCASV   91 (132)
Q Consensus        85 ~~~l~~v   91 (132)
                      .+.+.+.
T Consensus       160 ~~~~~~~  166 (218)
T 3dxy_A          160 LEVMSSI  166 (218)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHhC
Confidence            5555543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=97.79  E-value=7.2e-05  Score=51.79  Aligned_cols=80  Identities=11%  Similarity=0.058  Sum_probs=57.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      +|++++.+|+.+.+.   .++||+|+.+..-.     . ..-...++++.+++.|+|||.+++...+.    .....+.+
T Consensus       102 ~~~~~~~~d~~~~~~---~~~~D~v~~~~~~~-----~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~  168 (194)
T 1dus_A          102 YDIRVVHSDLYENVK---DRKYNKIITNPPIR-----A-GKEVLHRIIEEGKELLKDNGEIWVVIQTK----QGAKSLAK  168 (194)
T ss_dssp             SCEEEEECSTTTTCT---TSCEEEEEECCCST-----T-CHHHHHHHHHHHHHHEEEEEEEEEEEEST----HHHHHHHH
T ss_pred             cceEEEECchhcccc---cCCceEEEECCCcc-----c-chhHHHHHHHHHHHHcCCCCEEEEEECCC----CChHHHHH
Confidence            369999999887543   46899999975211     1 01124689999999999999999864222    33456778


Q ss_pred             HHHhhCCCceEeE
Q psy4593          87 HCASVFPRVAYGA   99 (132)
Q Consensus        87 ~l~~vF~~v~~~~   99 (132)
                      .+++.|..+..+.
T Consensus       169 ~l~~~~~~~~~~~  181 (194)
T 1dus_A          169 YMKDVFGNVETVT  181 (194)
T ss_dssp             HHHHHHSCCEEEE
T ss_pred             HHHHHhcceEEEe
Confidence            8888898888644

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.77  E-value=2.2e-05  Score=65.81  Aligned_cols=63  Identities=16%  Similarity=0.217  Sum_probs=52.7

Q ss_pred             CCcEEEEccHHHHhcCCC---CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593           7 YPVLSARQDCTDFMSGPV---KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT   73 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~---~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~   73 (132)
                      -+++++++|+++.|.+..   ..++|+|++|.|.|    .-...|++.++|+.+.++++|||.+++.+..
T Consensus       156 ~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p----~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~  221 (676)
T 3ps9_A          156 VTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAP----AKNPDMWTQNLFNAMARLARPGGTLATFTSA  221 (676)
T ss_dssp             EEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCG----GGCGGGSCHHHHHHHHHHEEEEEEEEESCCC
T ss_pred             EEEEEecCCHHHHHHhcccccCCcccEEEECCCCC----cCChhhhhHHHHHHHHHHhCCCCEEEeccCc
Confidence            456789999999998742   46899999999998    2334799999999999999999999987533

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.74  E-value=0.00049  Score=50.18  Aligned_cols=99  Identities=8%  Similarity=0.042  Sum_probs=64.5

Q ss_pred             CCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL   85 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~   85 (132)
                      ++++++.+|+.++.... ..++||+|+++....           -.++++.+++.|+|||++++..+..  ..+....+.
T Consensus       120 ~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~g~~--~~~~~~~~~  186 (240)
T 1xdz_A          120 ENTTFCHDRAETFGQRKDVRESYDIVTARAVAR-----------LSVLSELCLPLVKKNGLFVALKAAS--AEEELNAGK  186 (240)
T ss_dssp             SSEEEEESCHHHHTTCTTTTTCEEEEEEECCSC-----------HHHHHHHHGGGEEEEEEEEEEECC---CHHHHHHHH
T ss_pred             CCEEEEeccHHHhcccccccCCccEEEEeccCC-----------HHHHHHHHHHhcCCCCEEEEEeCCC--chHHHHHHH
Confidence            36999999998875320 247899999876322           3789999999999999999864332  234455666


Q ss_pred             HHHHhh-CCCceEeEEeccCcCCCceeEEEeecCC
Q psy4593          86 QHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQLL  119 (132)
Q Consensus        86 ~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~~  119 (132)
                      +.+++. |.-+.......|.. .+.+.+++..+..
T Consensus       187 ~~l~~~g~~~~~~~~~~~~~~-~~~~~l~~~~k~~  220 (240)
T 1xdz_A          187 KAITTLGGELENIHSFKLPIE-ESDRNIMVIRKIK  220 (240)
T ss_dssp             HHHHHTTEEEEEEEEEECTTT-CCEEEEEEEEECS
T ss_pred             HHHHHcCCeEeEEEEEecCCC-CCceEEEEEEecC
Confidence            666654 54444433345543 3456667666543

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=97.73  E-value=0.00012  Score=52.36  Aligned_cols=84  Identities=10%  Similarity=0.014  Sum_probs=57.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL   85 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~   85 (132)
                      ++++++.+|+.++.....+++||+|+++..+|+... .-...+...++++.++++|+|||++++.+..    ......+.
T Consensus        91 ~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~  166 (214)
T 1yzh_A           91 PNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN----RGLFEYSL  166 (214)
T ss_dssp             SSEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC----HHHHHHHH
T ss_pred             CCEEEEeCCHHHHHhhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC----HHHHHHHH
Confidence            589999999987443224568999999987774110 1112456789999999999999999986432    23445556


Q ss_pred             HHHHhh-CCC
Q psy4593          86 QHCASV-FPR   94 (132)
Q Consensus        86 ~~l~~v-F~~   94 (132)
                      +.+++. |..
T Consensus       167 ~~~~~~g~~~  176 (214)
T 1yzh_A          167 VSFSQYGMKL  176 (214)
T ss_dssp             HHHHHHTCEE
T ss_pred             HHHHHCCCee
Confidence            666654 443

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.72  E-value=3.3e-05  Score=56.64  Aligned_cols=75  Identities=16%  Similarity=0.143  Sum_probs=56.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      .+++++.+|+.+.+.   +.+||+|++|..++            .++++.+++.|+|||.+++...+    ......+.+
T Consensus       145 ~~v~~~~~d~~~~~~---~~~~D~v~~~~~~~------------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~  205 (255)
T 3mb5_A          145 DRVTIKLKDIYEGIE---EENVDHVILDLPQP------------ERVVEHAAKALKPGGFFVAYTPC----SNQVMRLHE  205 (255)
T ss_dssp             TTEEEECSCGGGCCC---CCSEEEEEECSSCG------------GGGHHHHHHHEEEEEEEEEEESS----HHHHHHHHH
T ss_pred             CceEEEECchhhccC---CCCcCEEEECCCCH------------HHHHHHHHHHcCCCCEEEEEECC----HHHHHHHHH
Confidence            469999999987643   46799999987655            46799999999999999986422    234566777


Q ss_pred             HHHhh---CCCceEeEE
Q psy4593          87 HCASV---FPRVAYGAT  100 (132)
Q Consensus        87 ~l~~v---F~~v~~~~~  100 (132)
                      .+++.   |..+..+..
T Consensus       206 ~l~~~g~~f~~~~~~e~  222 (255)
T 3mb5_A          206 KLREFKDYFMKPRTINV  222 (255)
T ss_dssp             HHHHTGGGBSCCEEECC
T ss_pred             HHHHcCCCccccEEEEE
Confidence            77765   887776543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.72  E-value=4e-05  Score=64.42  Aligned_cols=62  Identities=16%  Similarity=0.237  Sum_probs=51.6

Q ss_pred             CcEEEEccHHHHhcCCC---CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593           8 PVLSARQDCTDFMSGPV---KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT   73 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~---~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~   73 (132)
                      +++++++|+++.|.+..   ..++|+|++|.|.|.    -...+++.+||+.+.++++|||.++..+..
T Consensus       149 ~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~----~np~~w~~~~~~~l~~~~~~g~~~~t~~~~  213 (689)
T 3pvc_A          149 TLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPA----KNPDMWNEQLFNAMARMTRPGGTFSTFTAA  213 (689)
T ss_dssp             EEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC------CCTTCSHHHHHHHHHHEEEEEEEEESCCC
T ss_pred             EEEEEccCHHHHHhhcccccCCceeEEEECCCCCC----CChhhhhHHHHHHHHHHhCCCCEEEeccCc
Confidence            56789999999998732   478999999999983    334699999999999999999999987533

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.67  E-value=0.00011  Score=52.76  Aligned_cols=54  Identities=17%  Similarity=0.199  Sum_probs=42.6

Q ss_pred             CCcEEEEccHHHHhcCCCC----CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVK----NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~----~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+++.....    ++||+|++|....          -..++++.+++.|+|||++++.
T Consensus       116 ~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~----------~~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          116 DKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKA----------NTDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             TTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCGG----------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEeCCHHHHHHHhhhccCCCCccEEEECCCHH----------HHHHHHHHHHHhcCCCcEEEEe
Confidence            5799999999998754211    7899999887421          2367999999999999999874

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.60  E-value=5.6e-05  Score=54.92  Aligned_cols=77  Identities=17%  Similarity=0.079  Sum_probs=54.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      ++++++.+|..+.+.  .++.||+|+.|..++            .++++.+.+.|+|||.+++...+    ......+.+
T Consensus       140 ~~~~~~~~d~~~~~~--~~~~~D~v~~~~~~~------------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~  201 (248)
T 2yvl_A          140 KNVKFFNVDFKDAEV--PEGIFHAAFVDVREP------------WHYLEKVHKSLMEGAPVGFLLPT----ANQVIKLLE  201 (248)
T ss_dssp             TTEEEECSCTTTSCC--CTTCBSEEEECSSCG------------GGGHHHHHHHBCTTCEEEEEESS----HHHHHHHHH
T ss_pred             CcEEEEEcChhhccc--CCCcccEEEECCcCH------------HHHHHHHHHHcCCCCEEEEEeCC----HHHHHHHHH
Confidence            678999999877541  235799999976544            35689999999999999986532    234556666


Q ss_pred             HHHhhCCCceEeEEe
Q psy4593          87 HCASVFPRVAYGATC  101 (132)
Q Consensus        87 ~l~~vF~~v~~~~~~  101 (132)
                      .+++.|..+..+...
T Consensus       202 ~l~~~f~~~~~~~~~  216 (248)
T 2yvl_A          202 SIENYFGNLEVVEIL  216 (248)
T ss_dssp             HSTTTEEEEEEEEEE
T ss_pred             HHHhhCCcceEEEee
Confidence            666557666655443

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.59  E-value=0.00011  Score=53.05  Aligned_cols=57  Identities=16%  Similarity=0.100  Sum_probs=42.1

Q ss_pred             CCcEEEEccHHHHhcCCCC----CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVK----NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~----~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|+.+++.....    ++||+|++|.....       ..-..++++.+ +.|+|||++++..
T Consensus       110 ~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~-------~~~~~~~~~~~-~~LkpgG~lv~~~  170 (221)
T 3u81_A          110 DKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDR-------YLPDTLLLEKC-GLLRKGTVLLADN  170 (221)
T ss_dssp             GGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGG-------HHHHHHHHHHT-TCCCTTCEEEESC
T ss_pred             CceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCccc-------chHHHHHHHhc-cccCCCeEEEEeC
Confidence            4799999999999876322    68999999964321       11123677777 9999999999853

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.58  E-value=0.00033  Score=51.75  Aligned_cols=85  Identities=7%  Similarity=-0.068  Sum_probs=53.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCC-CCCCCc------------ccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGR-VVCPAE------------SLFQASYFELMSRALRPGGIVCSQAGT   73 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~-~~~~~~------------~L~t~eF~~~~~~~L~p~Gil~~~~~~   73 (132)
                      .|++++.+|+.++......++||+|++|.+=-.. ..+...            ..--.++++.+++.|+|||.+++-.  
T Consensus        99 ~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--  176 (259)
T 3lpm_A           99 DQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH--  176 (259)
T ss_dssp             TTEEEECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE--
T ss_pred             ccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE--
Confidence            4799999999998764346899999998531000 000000            0112579999999999999999732  


Q ss_pred             CCCChHHHHHHHHHHHhh-CCCce
Q psy4593          74 LWYSLDCVGNTLQHCASV-FPRVA   96 (132)
Q Consensus        74 ~~~~~~~~~~~~~~l~~v-F~~v~   96 (132)
                      +.   .....+.+.+++. |.-..
T Consensus       177 ~~---~~~~~~~~~l~~~~~~~~~  197 (259)
T 3lpm_A          177 RP---ERLLDIIDIMRKYRLEPKR  197 (259)
T ss_dssp             CT---TTHHHHHHHHHHTTEEEEE
T ss_pred             cH---HHHHHHHHHHHHCCCceEE
Confidence            11   2245566667664 44333

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.56  E-value=0.00013  Score=56.22  Aligned_cols=69  Identities=13%  Similarity=0.171  Sum_probs=51.2

Q ss_pred             CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCc---c-------cccHHHHHHHHHhcCCCcEEEEecC
Q psy4593           3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAE---S-------LFQASYFELMSRALRPGGIVCSQAG   72 (132)
Q Consensus         3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~---~-------L~t~eF~~~~~~~L~p~Gil~~~~~   72 (132)
                      .|...+.+++.+|+++.|+...++++|+|++|.+=.   .....   .       -+-.+.++.+++.|+|||.++++.+
T Consensus         9 ~~~~~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~---~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~   85 (323)
T 1boo_A            9 AYTTSNGSMYIGDSLELLESFPEESISLVMTSPPFA---LQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG   85 (323)
T ss_dssp             SEECSSEEEEESCHHHHGGGSCSSCEEEEEECCCCS---SSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             eeecCCceEEeCcHHHHHhhCCCCCeeEEEECCCCC---CCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence            366788999999999999875668999999997522   11100   0       1346778889999999999999865


Q ss_pred             CC
Q psy4593          73 TL   74 (132)
Q Consensus        73 ~~   74 (132)
                      ..
T Consensus        86 d~   87 (323)
T 1boo_A           86 GA   87 (323)
T ss_dssp             CC
T ss_pred             CE
Confidence            43

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.55  E-value=0.00028  Score=52.48  Aligned_cols=86  Identities=14%  Similarity=0.108  Sum_probs=55.4

Q ss_pred             CCcEEEEccHHHHhc-----CCCCCeecEEEEcCCCCCCCCC----------CC---cccccHHHHHHHHHhcCCCcEEE
Q psy4593           7 YPVLSARQDCTDFMS-----GPVKNMCGLVVSGAAGPGRVVC----------PA---ESLFQASYFELMSRALRPGGIVC   68 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~-----~~~~~~yDvIi~D~~dp~~~~~----------~~---~~L~t~eF~~~~~~~L~p~Gil~   68 (132)
                      .|++++.+|..+++.     ...+++||+|+++..--.  ..          .+   ....-.++++.+++.|+|||.++
T Consensus        90 ~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~--~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~  167 (260)
T 2ozv_A           90 ARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYND--AGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLS  167 (260)
T ss_dssp             GGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC-----------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred             ceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcC--CCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEE
Confidence            369999999988743     113578999999843110  10          00   01224789999999999999998


Q ss_pred             EecCCCCCChHHHHHHHHHHHhhCCCceEeE
Q psy4593          69 SQAGTLWYSLDCVGNTLQHCASVFPRVAYGA   99 (132)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~   99 (132)
                      +-...     .....+.+.+++.|..+.+..
T Consensus       168 ~~~~~-----~~~~~~~~~l~~~~~~~~i~~  193 (260)
T 2ozv_A          168 LISRP-----QSVAEIIAACGSRFGGLEITL  193 (260)
T ss_dssp             EEECG-----GGHHHHHHHHTTTEEEEEEEE
T ss_pred             EEEcH-----HHHHHHHHHHHhcCCceEEEE
Confidence            74311     235567777877776665543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.54  E-value=7.2e-05  Score=52.71  Aligned_cols=105  Identities=14%  Similarity=-0.047  Sum_probs=57.4

Q ss_pred             CcEEEEccHHHHhcC--CCCCeecEEEEcCCC-CCCCC-CCCcccc-----------------cHHHHHHHHHhcCCCcE
Q psy4593           8 PVLSARQDCTDFMSG--PVKNMCGLVVSGAAG-PGRVV-CPAESLF-----------------QASYFELMSRALRPGGI   66 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~--~~~~~yDvIi~D~~d-p~~~~-~~~~~L~-----------------t~eF~~~~~~~L~p~Gi   66 (132)
                      +++++.+|+.+.+..  ...++||+|+.|.+- +.... .......                 -.++++.+++.|+|||+
T Consensus        80 ~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  159 (215)
T 4dzr_A           80 VVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRA  159 (215)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSE
T ss_pred             ceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCe
Confidence            678888999987653  123789999998531 10000 0000100                 17889999999999999


Q ss_pred             -EEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCC
Q psy4593          67 -VCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLL  119 (132)
Q Consensus        67 -l~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~  119 (132)
                       +++..  .....+.+..+++.++..|..+...    +.+.+ ..-++++.+..
T Consensus       160 l~~~~~--~~~~~~~~~~~l~~~~~gf~~~~~~----~~~~~-~~r~~~~~~~~  206 (215)
T 4dzr_A          160 GVFLEV--GHNQADEVARLFAPWRERGFRVRKV----KDLRG-IDRVIAVTREP  206 (215)
T ss_dssp             EEEEEC--TTSCHHHHHHHTGGGGGGTEECCEE----ECTTS-CEEEEEEEECC
T ss_pred             EEEEEE--CCccHHHHHHHHHHhhcCCceEEEE----EecCC-CEEEEEEEEcC
Confidence             66543  2234444444444334557766653    33333 45566666543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.54  E-value=6.6e-05  Score=54.62  Aligned_cols=61  Identities=11%  Similarity=-0.001  Sum_probs=43.2

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ++++++.+|+.+.+....+++||+|++|.+...  ......-.-..+++.+++.|+|||++++
T Consensus       108 ~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~--~~~~~~~~~~~~l~~~~r~LkpgG~l~~  168 (236)
T 1zx0_A          108 HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLS--EETWHTHQFNFIKNHAFRLLKPGGVLTY  168 (236)
T ss_dssp             SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCB--GGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             CCeEEEecCHHHhhcccCCCceEEEEECCcccc--hhhhhhhhHHHHHHHHHHhcCCCeEEEE
Confidence            678999999999865435679999999865321  1111111123678999999999999985

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.49  E-value=0.00034  Score=55.13  Aligned_cols=81  Identities=7%  Similarity=0.019  Sum_probs=51.0

Q ss_pred             CcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccc--cHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593           8 PVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLF--QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~--t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      +++++.+|+.+++...  ...+||+|++|.+--...........  -.++++.+.+.|+|||++++.+.+.....+.+..
T Consensus       264 ~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~  343 (385)
T 2b78_A          264 NHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKK  343 (385)
T ss_dssp             TEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHH
T ss_pred             ceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHH
Confidence            8999999999988642  24589999999753100001111111  1346678899999999999876555555554444


Q ss_pred             HHHHH
Q psy4593          84 TLQHC   88 (132)
Q Consensus        84 ~~~~l   88 (132)
                      +++..
T Consensus       344 ~i~~~  348 (385)
T 2b78_A          344 QIEKG  348 (385)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.46  E-value=0.00067  Score=47.95  Aligned_cols=75  Identities=16%  Similarity=0.192  Sum_probs=54.3

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      ++++++.+|+.+.+..  ..+||+|+.+....          ...++++.+++.|+|||.+++....    ......+.+
T Consensus        90 ~~v~~~~~d~~~~~~~--~~~~D~i~~~~~~~----------~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~  153 (204)
T 3e05_A           90 RNVTLVEAFAPEGLDD--LPDPDRVFIGGSGG----------MLEEIIDAVDRRLKSEGVIVLNAVT----LDTLTKAVE  153 (204)
T ss_dssp             TTEEEEECCTTTTCTT--SCCCSEEEESCCTT----------CHHHHHHHHHHHCCTTCEEEEEECB----HHHHHHHHH
T ss_pred             CcEEEEeCChhhhhhc--CCCCCEEEECCCCc----------CHHHHHHHHHHhcCCCeEEEEEecc----cccHHHHHH
Confidence            6799999998876654  36799999986422          2468999999999999999986422    234566667


Q ss_pred             HHHhh-CCCceEe
Q psy4593          87 HCASV-FPRVAYG   98 (132)
Q Consensus        87 ~l~~v-F~~v~~~   98 (132)
                      .+++. | .+...
T Consensus       154 ~l~~~g~-~~~~~  165 (204)
T 3e05_A          154 FLEDHGY-MVEVA  165 (204)
T ss_dssp             HHHHTTC-EEEEE
T ss_pred             HHHHCCC-ceeEE
Confidence            77765 6 54443

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.45  E-value=0.0002  Score=48.47  Aligned_cols=85  Identities=18%  Similarity=0.127  Sum_probs=54.7

Q ss_pred             CCcEEEEccHHHHh-----cC-CCCCeecEEEEcCCCCCCCCCCCccc-------ccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593           7 YPVLSARQDCTDFM-----SG-PVKNMCGLVVSGAAGPGRVVCPAESL-------FQASYFELMSRALRPGGIVCSQAGT   73 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l-----~~-~~~~~yDvIi~D~~dp~~~~~~~~~L-------~t~eF~~~~~~~L~p~Gil~~~~~~   73 (132)
                      ++++++.+|..+.-     .. ..+++||+|+.|..-.+  .+ ....       ....+++.+++.|+|||.+++....
T Consensus        62 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~--~~-~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  138 (180)
T 1ej0_A           62 VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNM--SG-TPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ  138 (180)
T ss_dssp             TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCC--CS-CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccc--cC-CCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            67888999986641     11 13468999999865331  11 1000       0168999999999999999975311


Q ss_pred             CCCChHHHHHHHHHHHhhCCCceEe
Q psy4593          74 LWYSLDCVGNTLQHCASVFPRVAYG   98 (132)
Q Consensus        74 ~~~~~~~~~~~~~~l~~vF~~v~~~   98 (132)
                      .    .....+.+.+++.|..+...
T Consensus       139 ~----~~~~~~~~~~~~~~~~~~~~  159 (180)
T 1ej0_A          139 G----EGFDEYLREIRSLFTKVKVR  159 (180)
T ss_dssp             S----TTHHHHHHHHHHHEEEEEEE
T ss_pred             C----CcHHHHHHHHHHhhhhEEee
Confidence            1    12456677777778877654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.45  E-value=0.0017  Score=45.48  Aligned_cols=63  Identities=11%  Similarity=0.010  Sum_probs=43.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRVV-CPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.++... .+++||+|+.|..- |.... .....-...++++.+.+.|+|||.+++.
T Consensus        74 ~~v~~~~~d~~~~~~~-~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~  138 (197)
T 3eey_A           74 DRVTLIKDGHQNMDKY-IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVV  138 (197)
T ss_dssp             GGEEEECSCGGGGGGT-CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCeEEEECCHHHHhhh-ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEE
Confidence            5799999999887655 45799999998632 21000 0001112357999999999999999875

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=97.45  E-value=0.00039  Score=50.08  Aligned_cols=81  Identities=10%  Similarity=0.026  Sum_probs=55.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL   85 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~   85 (132)
                      ++++++.+|+.+......++.||.|++...+|+... .-...+...+|++.+++.|+|||.+++.+.+    ......+.
T Consensus        88 ~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~----~~~~~~~~  163 (213)
T 2fca_A           88 QNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN----RGLFEYSL  163 (213)
T ss_dssp             SSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC----HHHHHHHH
T ss_pred             CCEEEEeCCHHHHHhhcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC----HHHHHHHH
Confidence            579999999987432123567999999887775111 1123466789999999999999999986422    23344555


Q ss_pred             HHHHhh
Q psy4593          86 QHCASV   91 (132)
Q Consensus        86 ~~l~~v   91 (132)
                      +.+.+.
T Consensus       164 ~~~~~~  169 (213)
T 2fca_A          164 KSFSEY  169 (213)
T ss_dssp             HHHHHH
T ss_pred             HHHHHC
Confidence            566554

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.44  E-value=0.00013  Score=54.81  Aligned_cols=77  Identities=10%  Similarity=0.033  Sum_probs=53.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCC--CCChHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL--WYSLDCVGNT   84 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~--~~~~~~~~~~   84 (132)
                      .+++++.+|+.+++.   .++||+|++|....           ..++++.+.+.|+|||++++...++  .........+
T Consensus       175 ~~v~~~~~D~~~~~~---~~~fD~Vi~~~p~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i  240 (278)
T 2frn_A          175 DRMSAYNMDNRDFPG---ENIADRILMGYVVR-----------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETF  240 (278)
T ss_dssp             TTEEEECSCTTTCCC---CSCEEEEEECCCSS-----------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHH
T ss_pred             ceEEEEECCHHHhcc---cCCccEEEECCchh-----------HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHH
Confidence            468899999988765   47899999985421           2678999999999999999864332  1223345666


Q ss_pred             HHHHHhhCCCceE
Q psy4593          85 LQHCASVFPRVAY   97 (132)
Q Consensus        85 ~~~l~~vF~~v~~   97 (132)
                      .+.+++..-.+..
T Consensus       241 ~~~~~~~G~~~~~  253 (278)
T 2frn_A          241 KRITKEYGYDVEK  253 (278)
T ss_dssp             HHHHHHTTCEEEE
T ss_pred             HHHHHHcCCeeEE
Confidence            6666665444433

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.44  E-value=0.00037  Score=49.62  Aligned_cols=105  Identities=16%  Similarity=0.047  Sum_probs=61.6

Q ss_pred             CCcEEEEccHHHH---------hcCCCCCeecEEEEcCCCCCCCCCCC--ccc----ccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDF---------MSGPVKNMCGLVVSGAAGPGRVVCPA--ESL----FQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~---------l~~~~~~~yDvIi~D~~dp~~~~~~~--~~L----~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|..+.         +.....++||+|++|..-..  .+..  ...    .....++.+.+.|+|||.+++..
T Consensus        62 ~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~--~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~  139 (191)
T 3dou_A           62 AGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKV--SGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ  139 (191)
T ss_dssp             TTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCC--CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCC--CCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            5789999996542         11001148999999975321  1110  000    12456788899999999999753


Q ss_pred             CCCCCChHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecC
Q psy4593          72 GTLWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQL  118 (132)
Q Consensus        72 ~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~  118 (132)
                         + ..+....+.+.+++.|..|.... ...+.++..=.|++|...
T Consensus       140 ---~-~~~~~~~~~~~l~~~F~~v~~~k-P~asR~~s~E~y~v~~~~  181 (191)
T 3dou_A          140 ---F-QGDMTNDFIAIWRKNFSSYKISK-PPASRGSSSEIYIMFFGF  181 (191)
T ss_dssp             ---E-CSTHHHHHHHHHGGGEEEEEEEC-C------CCEEEEEEEEE
T ss_pred             ---c-CCCCHHHHHHHHHHhcCEEEEEC-CCCccCCCceEEEEEeee
Confidence               1 22235678888999999888643 223333334456777554

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.42  E-value=0.001  Score=45.78  Aligned_cols=75  Identities=17%  Similarity=0.241  Sum_probs=55.2

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      ++++++.+|..+.+..  ..+||+|+.+....        .  -.++++.+++.|+|||.+++...+    ......+.+
T Consensus        82 ~~~~~~~~d~~~~~~~--~~~~D~v~~~~~~~--------~--~~~~l~~~~~~l~~gG~l~~~~~~----~~~~~~~~~  145 (192)
T 1l3i_A           82 DNVTLMEGDAPEALCK--IPDIDIAVVGGSGG--------E--LQEILRIIKDKLKPGGRIIVTAIL----LETKFEAME  145 (192)
T ss_dssp             TTEEEEESCHHHHHTT--SCCEEEEEESCCTT--------C--HHHHHHHHHHTEEEEEEEEEEECB----HHHHHHHHH
T ss_pred             cceEEEecCHHHhccc--CCCCCEEEECCchH--------H--HHHHHHHHHHhcCCCcEEEEEecC----cchHHHHHH
Confidence            6899999999987655  24899999875322        1  288999999999999999985422    334566777


Q ss_pred             HHHhh-CCCceEe
Q psy4593          87 HCASV-FPRVAYG   98 (132)
Q Consensus        87 ~l~~v-F~~v~~~   98 (132)
                      .+++. | .+...
T Consensus       146 ~l~~~g~-~~~~~  157 (192)
T 1l3i_A          146 CLRDLGF-DVNIT  157 (192)
T ss_dssp             HHHHTTC-CCEEE
T ss_pred             HHHHCCC-ceEEE
Confidence            77766 7 55543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.42  E-value=0.00012  Score=53.40  Aligned_cols=75  Identities=12%  Similarity=-0.001  Sum_probs=54.9

Q ss_pred             CCCcEEEEccHHHH-hcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHH
Q psy4593           6 GYPVLSARQDCTDF-MSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT   84 (132)
Q Consensus         6 d~rv~v~~~Dg~~~-l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~   84 (132)
                      .++++++.+|+.+. +   .+++||+|++|..++            .++++.+++.|+|||.+++...+    ......+
T Consensus       147 ~~~v~~~~~d~~~~~~---~~~~~D~v~~~~~~~------------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~  207 (258)
T 2pwy_A          147 VENVRFHLGKLEEAEL---EEAAYDGVALDLMEP------------WKVLEKAALALKPDRFLVAYLPN----ITQVLEL  207 (258)
T ss_dssp             CCCEEEEESCGGGCCC---CTTCEEEEEEESSCG------------GGGHHHHHHHEEEEEEEEEEESC----HHHHHHH
T ss_pred             CCCEEEEECchhhcCC---CCCCcCEEEECCcCH------------HHHHHHHHHhCCCCCEEEEEeCC----HHHHHHH
Confidence            46899999998875 3   346899999987554            36799999999999999986422    2345677


Q ss_pred             HHHHHhh-CCCceEeE
Q psy4593          85 LQHCASV-FPRVAYGA   99 (132)
Q Consensus        85 ~~~l~~v-F~~v~~~~   99 (132)
                      .+.+++. |..+..+.
T Consensus       208 ~~~l~~~gf~~~~~~~  223 (258)
T 2pwy_A          208 VRAAEAHPFRLERVLE  223 (258)
T ss_dssp             HHHHTTTTEEEEEEEE
T ss_pred             HHHHHHCCCceEEEEE
Confidence            7777764 66555443

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=97.41  E-value=0.00074  Score=52.94  Aligned_cols=87  Identities=10%  Similarity=0.035  Sum_probs=56.3

Q ss_pred             CcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCccc-----ccHHHHHHHHHhcCCCcEEEEecCCCCCChHH
Q psy4593           8 PVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESL-----FQASYFELMSRALRPGGIVCSQAGTLWYSLDC   80 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L-----~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~   80 (132)
                      +++++.+|+.+++...  ...+||+|++|.+.-.  ... ..+     .-.++++.+.+.|+|||++++.+.+.....+.
T Consensus       258 ~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~--~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  334 (382)
T 1wxx_A          258 NVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFA--KGK-KDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPL  334 (382)
T ss_dssp             TEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSC--CST-TSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHH
T ss_pred             CceEEECCHHHHHHHHHhcCCCeeEEEECCCCCC--CCh-hHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHH
Confidence            3899999999997641  2568999999974310  111 111     12568899999999999999876555555544


Q ss_pred             HHHHH-HHHHhhCCCceE
Q psy4593          81 VGNTL-QHCASVFPRVAY   97 (132)
Q Consensus        81 ~~~~~-~~l~~vF~~v~~   97 (132)
                      +..++ +.+.+.-..+..
T Consensus       335 ~~~~i~~~~~~~g~~~~~  352 (382)
T 1wxx_A          335 FYAMVAEAAQDAHRLLRV  352 (382)
T ss_dssp             HHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHcCCeEEE
Confidence            44443 455555444444

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.38  E-value=0.00032  Score=49.11  Aligned_cols=59  Identities=10%  Similarity=0.046  Sum_probs=44.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH--hcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR--ALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~--~L~p~Gil~~~~   71 (132)
                      ++++++.+|+.+++....+++||+|+.|..-.     .. .-...++++.+++  .|+|||++++..
T Consensus        93 ~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~-----~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~  153 (189)
T 3p9n_A           93 SGATLRRGAVAAVVAAGTTSPVDLVLADPPYN-----VD-SADVDAILAALGTNGWTREGTVAVVER  153 (189)
T ss_dssp             SCEEEEESCHHHHHHHCCSSCCSEEEECCCTT-----SC-HHHHHHHHHHHHHSSSCCTTCEEEEEE
T ss_pred             CceEEEEccHHHHHhhccCCCccEEEECCCCC-----cc-hhhHHHHHHHHHhcCccCCCeEEEEEe
Confidence            58999999999998652367999999985311     11 0124678889988  999999999864

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.37  E-value=0.00014  Score=55.76  Aligned_cols=69  Identities=13%  Similarity=0.057  Sum_probs=48.2

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      ++++++.+|+.+.+....+++||+|++|..+|+            .+++.+++.|+|||.+++...    .......+++
T Consensus       167 ~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~------------~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~~  230 (336)
T 2b25_A          167 DNVDFIHKDISGATEDIKSLTFDAVALDMLNPH------------VTLPVFYPHLKHGGVCAVYVV----NITQVIELLD  230 (336)
T ss_dssp             CCEEEEESCTTCCC-------EEEEEECSSSTT------------TTHHHHGGGEEEEEEEEEEES----SHHHHHHHHH
T ss_pred             CceEEEECChHHcccccCCCCeeEEEECCCCHH------------HHHHHHHHhcCCCcEEEEEeC----CHHHHHHHHH
Confidence            689999999987653323467999999987662            168999999999999998643    2345666677


Q ss_pred             HHHhh
Q psy4593          87 HCASV   91 (132)
Q Consensus        87 ~l~~v   91 (132)
                      .+++.
T Consensus       231 ~l~~~  235 (336)
T 2b25_A          231 GIRTC  235 (336)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            77653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.36  E-value=0.0006  Score=54.11  Aligned_cols=71  Identities=11%  Similarity=0.075  Sum_probs=47.6

Q ss_pred             EEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC-ccc-----ccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593          10 LSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA-ESL-----FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus        10 ~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~-~~L-----~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      +++.+|+.+++.. ..++||+|++|.+.    .... ..+     .-.++++.+.+.|+|||+++.-+.+.....+.+..
T Consensus       264 ~~~~~D~~~~l~~-~~~~fD~Ii~dpP~----f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~  338 (393)
T 4dmg_A          264 DIRHGEALPTLRG-LEGPFHHVLLDPPT----LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLE  338 (393)
T ss_dssp             EEEESCHHHHHHT-CCCCEEEEEECCCC----CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHH
T ss_pred             cEEEccHHHHHHH-hcCCCCEEEECCCc----CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHH
Confidence            5779999999977 34459999999642    1111 111     11478889999999999998765555555544444


Q ss_pred             HH
Q psy4593          84 TL   85 (132)
Q Consensus        84 ~~   85 (132)
                      ++
T Consensus       339 ~v  340 (393)
T 4dmg_A          339 VA  340 (393)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.33  E-value=0.00044  Score=51.79  Aligned_cols=87  Identities=10%  Similarity=0.037  Sum_probs=54.3

Q ss_pred             CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCc-------------ccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAE-------------SLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~-------------~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|+.++....  ..++||+|++|++-..  .+.-.             .-...++++.+.+.|+|||.++..+
T Consensus       134 ~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~--~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st  211 (274)
T 3ajd_A          134 LNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSG--NIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST  211 (274)
T ss_dssp             CSEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC--------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcEEEEeCChHhcchhhhhccccCCEEEEcCCCCC--CcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            47999999999876420  1468999999964221  11100             0134789999999999999999866


Q ss_pred             CCCCCChHHHHHHHHHHHhhCCCceE
Q psy4593          72 GTLWYSLDCVGNTLQHCASVFPRVAY   97 (132)
Q Consensus        72 ~~~~~~~~~~~~~~~~l~~vF~~v~~   97 (132)
                      ++.....  -..+++.+.+..++..+
T Consensus       212 cs~~~~e--ne~~v~~~l~~~~~~~~  235 (274)
T 3ajd_A          212 CSMEVEE--NEEVIKYILQKRNDVEL  235 (274)
T ss_dssp             SCCCTTS--SHHHHHHHHHHCSSEEE
T ss_pred             CCCChHH--hHHHHHHHHHhCCCcEE
Confidence            5543221  13444555555565554

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.32  E-value=0.00043  Score=52.55  Aligned_cols=68  Identities=18%  Similarity=0.108  Sum_probs=44.9

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCCC-CCCccc--------c---cHHHHHHHHHhcCCCcEEEEecC
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRVV-CPAESL--------F---QASYFELMSRALRPGGIVCSQAG   72 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~-~~~~~L--------~---t~eF~~~~~~~L~p~Gil~~~~~   72 (132)
                      -.+++++++|..++++...+++||+|+.|.+= ..... .....+        +   -.+.++.+++.|+|||.+++..+
T Consensus        19 ~~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           19 FGVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             --CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            35678999999999987556899999999752 10000 000010        1   13466789999999999998764


Q ss_pred             C
Q psy4593          73 T   73 (132)
Q Consensus        73 ~   73 (132)
                      .
T Consensus        99 d   99 (297)
T 2zig_A           99 D   99 (297)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.29  E-value=0.00014  Score=54.36  Aligned_cols=74  Identities=18%  Similarity=0.271  Sum_probs=53.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      ++++++.+|+.+++.   +++||+|++|..++            .++++.+++.|+|||++++...+    ......+.+
T Consensus       162 ~~v~~~~~d~~~~~~---~~~fD~Vi~~~~~~------------~~~l~~~~~~LkpgG~l~i~~~~----~~~~~~~~~  222 (275)
T 1yb2_A          162 GNVRTSRSDIADFIS---DQMYDAVIADIPDP------------WNHVQKIASMMKPGSVATFYLPN----FDQSEKTVL  222 (275)
T ss_dssp             TTEEEECSCTTTCCC---SCCEEEEEECCSCG------------GGSHHHHHHTEEEEEEEEEEESS----HHHHHHHHH
T ss_pred             CcEEEEECchhccCc---CCCccEEEEcCcCH------------HHHHHHHHHHcCCCCEEEEEeCC----HHHHHHHHH
Confidence            679999999887432   36899999987554            36799999999999999986432    223556666


Q ss_pred             HHHhh-CCCceEeE
Q psy4593          87 HCASV-FPRVAYGA   99 (132)
Q Consensus        87 ~l~~v-F~~v~~~~   99 (132)
                      .+++. |..+..+.
T Consensus       223 ~l~~~Gf~~~~~~~  236 (275)
T 1yb2_A          223 SLSASGMHHLETVE  236 (275)
T ss_dssp             HSGGGTEEEEEEEE
T ss_pred             HHHHCCCeEEEEEE
Confidence            77664 66555544

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.28  E-value=0.00041  Score=51.05  Aligned_cols=82  Identities=12%  Similarity=0.049  Sum_probs=53.4

Q ss_pred             CCCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593           6 GYPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      .++++++.+|+.+++.. ..+++||.|++...||+.-. ..-..+...++++.++++|+|||.+++.+..    ......
T Consensus       101 ~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~----~~~~~~  176 (235)
T 3ckk_A          101 FQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV----LELHDW  176 (235)
T ss_dssp             CTTEEEEECCTTTCHHHHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC----HHHHHH
T ss_pred             CCeEEEEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC----HHHHHH
Confidence            46899999999875542 13578999999887875110 1123466789999999999999999986433    233444


Q ss_pred             HHHHHHhh
Q psy4593          84 TLQHCASV   91 (132)
Q Consensus        84 ~~~~l~~v   91 (132)
                      +.+.+.+.
T Consensus       177 ~~~~l~~~  184 (235)
T 3ckk_A          177 MCTHFEEH  184 (235)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHHHC
Confidence            55555543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.28  E-value=0.00026  Score=52.84  Aligned_cols=61  Identities=15%  Similarity=0.176  Sum_probs=45.6

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC--Cccc--------ccHHHHHHHHHhcCCCcEEEEec
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP--AESL--------FQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~--~~~L--------~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ..+++.+|+.++|+...++++|+|++|.+=.   .+.  -..+        +..+.++.+++.|+|+|+++++.
T Consensus         4 ~~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~---~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~   74 (260)
T 1g60_A            4 INKIHQMNCFDFLDQVENKSVQLAVIDPPYN---LSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (260)
T ss_dssp             SSSEEECCHHHHHHHSCTTCEEEEEECCCCS---SCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCeEEechHHHHHHhccccccCEEEECCCCC---CCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence            4578999999999876667999999998522   110  0111        44677888999999999999864

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.28  E-value=0.0028  Score=46.88  Aligned_cols=97  Identities=12%  Similarity=0.001  Sum_probs=64.0

Q ss_pred             CCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL   85 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~   85 (132)
                      .+++++.+|+.++... ...++||+|+.....+           -.++++.+++.|+|||.++...+..  ..+.+..+.
T Consensus       130 ~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~~~-----------~~~ll~~~~~~LkpgG~l~~~~g~~--~~~e~~~~~  196 (249)
T 3g89_A          130 KGARALWGRAEVLAREAGHREAYARAVARAVAP-----------LCVLSELLLPFLEVGGAAVAMKGPR--VEEELAPLP  196 (249)
T ss_dssp             SSEEEEECCHHHHTTSTTTTTCEEEEEEESSCC-----------HHHHHHHHGGGEEEEEEEEEEECSC--CHHHHTTHH
T ss_pred             CceEEEECcHHHhhcccccCCCceEEEECCcCC-----------HHHHHHHHHHHcCCCeEEEEEeCCC--cHHHHHHHH
Confidence            3599999999987643 1347899999876432           1688999999999999988764332  234455566


Q ss_pred             HHHHhh-CCCceEeEEeccCcCCCceeEEEeec
Q psy4593          86 QHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQ  117 (132)
Q Consensus        86 ~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~  117 (132)
                      +.+++. |.........+|...+ ....++..+
T Consensus       197 ~~l~~~G~~~~~~~~~~~p~~~~-~R~l~~~~k  228 (249)
T 3g89_A          197 PALERLGGRLGEVLALQLPLSGE-ARHLVVLEK  228 (249)
T ss_dssp             HHHHHHTEEEEEEEEEECTTTCC-EEEEEEEEE
T ss_pred             HHHHHcCCeEEEEEEeeCCCCCC-cEEEEEEEe
Confidence            666654 5544554556675433 444555544

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.27  E-value=0.0026  Score=45.61  Aligned_cols=97  Identities=9%  Similarity=0.042  Sum_probs=58.1

Q ss_pred             CCcEEEEccHHHHh--cCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec--CC-CC-CC-hH
Q psy4593           7 YPVLSARQDCTDFM--SGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA--GT-LW-YS-LD   79 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l--~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~--~~-~~-~~-~~   79 (132)
                      ++++++.+|+.+..  .. ..++||+|++|...+         -....+++.+++.|+|||.+++..  .+ .. .. ..
T Consensus       122 ~~v~~~~~d~~~~~~~~~-~~~~~D~v~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  191 (227)
T 1g8a_A          122 RNIVPILGDATKPEEYRA-LVPKVDVIFEDVAQP---------TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQ  191 (227)
T ss_dssp             TTEEEEECCTTCGGGGTT-TCCCEEEEEECCCST---------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHH
T ss_pred             CCCEEEEccCCCcchhhc-ccCCceEEEECCCCH---------hHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhh
Confidence            68999999987632  22 345899999987533         113466999999999999988741  11 11 11 12


Q ss_pred             HHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEee
Q psy4593          80 CVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGS  116 (132)
Q Consensus        80 ~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as  116 (132)
                      .....+..+.+.|..+...  .++.|.. ...++++.
T Consensus       192 ~~~~~l~~l~~~f~~~~~~--~~~~~~~-~~~~~~~~  225 (227)
T 1g8a_A          192 VFREVERELSEYFEVIERL--NLEPYEK-DHALFVVR  225 (227)
T ss_dssp             HHHHHHHHHHTTSEEEEEE--ECTTTSS-SEEEEEEE
T ss_pred             hhHHHHHHHHhhceeeeEe--ccCcccC-CCEEEEEE
Confidence            3344455555556655442  3444533 34455554

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.27  E-value=0.0021  Score=43.96  Aligned_cols=68  Identities=13%  Similarity=0.120  Sum_probs=47.6

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH   87 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~   87 (132)
                      ++ .+.+|+.+.+.. ..++||+|++...-.        .   .++++.+++.|+|||.+++...+    .+....+.+.
T Consensus        77 ~~-~~~~d~~~~~~~-~~~~~D~i~~~~~~~--------~---~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~  139 (178)
T 3hm2_A           77 RI-AVQQGAPRAFDD-VPDNPDVIFIGGGLT--------A---PGVFAAAWKRLPVGGRLVANAVT----VESEQMLWAL  139 (178)
T ss_dssp             SE-EEECCTTGGGGG-CCSCCSEEEECC-TT--------C---TTHHHHHHHTCCTTCEEEEEECS----HHHHHHHHHH
T ss_pred             CE-EEecchHhhhhc-cCCCCCEEEECCccc--------H---HHHHHHHHHhcCCCCEEEEEeec----cccHHHHHHH
Confidence            67 788898777665 447899999765332        1   77899999999999999986432    2234445555


Q ss_pred             HHhhC
Q psy4593          88 CASVF   92 (132)
Q Consensus        88 l~~vF   92 (132)
                      +++..
T Consensus       140 ~~~~~  144 (178)
T 3hm2_A          140 RKQFG  144 (178)
T ss_dssp             HHHHC
T ss_pred             HHHcC
Confidence            55553

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.25  E-value=0.0015  Score=51.34  Aligned_cols=87  Identities=11%  Similarity=-0.010  Sum_probs=55.5

Q ss_pred             CcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCC--cc--cccHHHHHHHHHhcCCCcEEEEecCCCCCChHHH
Q psy4593           8 PVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPA--ES--LFQASYFELMSRALRPGGIVCSQAGTLWYSLDCV   81 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~--~~--L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~   81 (132)
                      +++++.+|+.+++...  ...+||+|++|.+--.  ....  ..  -.-.+++..+.+.|+|||++++.+.+.....+.+
T Consensus       272 ~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~--~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  349 (396)
T 3c0k_A          272 KAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFV--ENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLF  349 (396)
T ss_dssp             GEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTT--TCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHH
T ss_pred             ceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCC--CChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHH
Confidence            7899999999987641  1468999999974310  1100  00  1235788999999999999998655544444444


Q ss_pred             HHHHH-HHHhhCCCce
Q psy4593          82 GNTLQ-HCASVFPRVA   96 (132)
Q Consensus        82 ~~~~~-~l~~vF~~v~   96 (132)
                      ..++. .+.+.-..+.
T Consensus       350 ~~~i~~~~~~~g~~~~  365 (396)
T 3c0k_A          350 QKIIADAAIDAGRDVQ  365 (396)
T ss_dssp             HHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHHcCCeEE
Confidence            44443 5555433333

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.25  E-value=0.0003  Score=52.14  Aligned_cols=75  Identities=13%  Similarity=0.072  Sum_probs=54.9

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL   85 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~   85 (132)
                      .++++++.+|+.+...  .++.||+|++|..++            .++++.+++.|+|||.+++...+    .+....+.
T Consensus       152 ~~~v~~~~~d~~~~~~--~~~~~D~v~~~~~~~------------~~~l~~~~~~L~pgG~l~~~~~~----~~~~~~~~  213 (280)
T 1i9g_A          152 PDNWRLVVSDLADSEL--PDGSVDRAVLDMLAP------------WEVLDAVSRLLVAGGVLMVYVAT----VTQLSRIV  213 (280)
T ss_dssp             CTTEEEECSCGGGCCC--CTTCEEEEEEESSCG------------GGGHHHHHHHEEEEEEEEEEESS----HHHHHHHH
T ss_pred             CCcEEEEECchHhcCC--CCCceeEEEECCcCH------------HHHHHHHHHhCCCCCEEEEEeCC----HHHHHHHH
Confidence            3689999999877521  356899999987665            26799999999999999987533    23456677


Q ss_pred             HHHHh--hCCCceEe
Q psy4593          86 QHCAS--VFPRVAYG   98 (132)
Q Consensus        86 ~~l~~--vF~~v~~~   98 (132)
                      +.+++  .|..+..+
T Consensus       214 ~~l~~~~~f~~~~~~  228 (280)
T 1i9g_A          214 EALRAKQCWTEPRAW  228 (280)
T ss_dssp             HHHHHHSSBCCCEEE
T ss_pred             HHHHhcCCcCCcEEE
Confidence            77775  36655544

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.25  E-value=0.0026  Score=45.45  Aligned_cols=66  Identities=15%  Similarity=0.115  Sum_probs=49.4

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH   87 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~   87 (132)
                      +++++.+|+.+.+..  ...||+|+++.  .   .       ..++++.+.+.|+|||.+++....    .+....+.+.
T Consensus       105 ~v~~~~~d~~~~~~~--~~~~D~v~~~~--~---~-------~~~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~  166 (204)
T 3njr_A          105 RMRAVQGTAPAALAD--LPLPEAVFIGG--G---G-------SQALYDRLWEWLAPGTRIVANAVT----LESETLLTQL  166 (204)
T ss_dssp             TEEEEESCTTGGGTT--SCCCSEEEECS--C---C-------CHHHHHHHHHHSCTTCEEEEEECS----HHHHHHHHHH
T ss_pred             CEEEEeCchhhhccc--CCCCCEEEECC--c---c-------cHHHHHHHHHhcCCCcEEEEEecC----cccHHHHHHH
Confidence            799999999987765  35799999875  1   1       233899999999999999986533    2345666666


Q ss_pred             HHhh
Q psy4593          88 CASV   91 (132)
Q Consensus        88 l~~v   91 (132)
                      +++.
T Consensus       167 l~~~  170 (204)
T 3njr_A          167 HARH  170 (204)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            6665

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=97.22  E-value=0.00062  Score=52.57  Aligned_cols=65  Identities=15%  Similarity=0.227  Sum_probs=47.7

Q ss_pred             CCCcEEE-EccHHHHhcCCCCCeecEEEEcCCCCCCCCCC-----Cccc--ccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593           6 GYPVLSA-RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP-----AESL--FQASYFELMSRALRPGGIVCSQAGT   73 (132)
Q Consensus         6 d~rv~v~-~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~-----~~~L--~t~eF~~~~~~~L~p~Gil~~~~~~   73 (132)
                      +...+++ .+|++++|+...++++|+|+.|.+=.   .+.     ....  +..+.+..+++.|+|||++++..+.
T Consensus        36 ~~~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~---~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~  108 (319)
T 1eg2_A           36 GTTRHVYDVCDCLDTLAKLPDDSVQLIICDPPYN---IMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL  108 (319)
T ss_dssp             CCEEEEEEECCHHHHHHTSCTTCEEEEEECCCSB---CCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             cccceEEECCcHHHHHHhCccCCcCEEEECCCCC---CCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCc
Confidence            3456788 99999999886667999999998522   110     1111  3467788899999999999988643

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.20  E-value=0.00015  Score=54.10  Aligned_cols=72  Identities=19%  Similarity=0.240  Sum_probs=52.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      ++++++.+|+.+.+.   +++||+|++|..++            .++++.+++.|+|||.+++...+    ......+.+
T Consensus       164 ~~v~~~~~d~~~~~~---~~~~D~V~~~~~~~------------~~~l~~~~~~L~pgG~l~~~~~~----~~~~~~~~~  224 (277)
T 1o54_A          164 ERVTIKVRDISEGFD---EKDVDALFLDVPDP------------WNYIDKCWEALKGGGRFATVCPT----TNQVQETLK  224 (277)
T ss_dssp             GGEEEECCCGGGCCS---CCSEEEEEECCSCG------------GGTHHHHHHHEEEEEEEEEEESS----HHHHHHHHH
T ss_pred             CCEEEEECCHHHccc---CCccCEEEECCcCH------------HHHHHHHHHHcCCCCEEEEEeCC----HHHHHHHHH
Confidence            578899999887643   35799999987554            36789999999999999986532    223456666


Q ss_pred             HHHhh-CCCceE
Q psy4593          87 HCASV-FPRVAY   97 (132)
Q Consensus        87 ~l~~v-F~~v~~   97 (132)
                      .+++. |..+..
T Consensus       225 ~l~~~gf~~~~~  236 (277)
T 1o54_A          225 KLQELPFIRIEV  236 (277)
T ss_dssp             HHHHSSEEEEEE
T ss_pred             HHHHCCCceeEE
Confidence            67654 655544

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=97.17  E-value=0.00072  Score=50.51  Aligned_cols=76  Identities=14%  Similarity=0.061  Sum_probs=49.4

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      -..++++.+.+|+-+. .- .+++||+|++-..=.        .+-...+++.++++|+|||++++...+.....+.+..
T Consensus        78 ~~~~~v~~~~~~~e~~-~~-~~~sfD~v~~~~~~h--------~~~~~~~~~e~~rvLkpgG~l~~~~~~~~~~~~~~~~  147 (257)
T 4hg2_A           78 LRHPRVTYAVAPAEDT-GL-PPASVDVAIAAQAMH--------WFDLDRFWAELRRVARPGAVFAAVTYGLTRVDPEVDA  147 (257)
T ss_dssp             CCCTTEEEEECCTTCC-CC-CSSCEEEEEECSCCT--------TCCHHHHHHHHHHHEEEEEEEEEEEECCCBCCHHHHH
T ss_pred             hhcCCceeehhhhhhh-cc-cCCcccEEEEeeehh--------HhhHHHHHHHHHHHcCCCCEEEEEECCCCCCCHHHHH
Confidence            3568899999997552 22 568999999742212        1224679999999999999998764222222234555


Q ss_pred             HHHHHH
Q psy4593          84 TLQHCA   89 (132)
Q Consensus        84 ~~~~l~   89 (132)
                      +++.+.
T Consensus       148 ~~~~~~  153 (257)
T 4hg2_A          148 VVDRLY  153 (257)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.17  E-value=0.00046  Score=52.80  Aligned_cols=99  Identities=14%  Similarity=0.134  Sum_probs=58.7

Q ss_pred             CcEE-EEccHHHHhcCCCCCeecEEEEcCCCCCCCC---CCC-cccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593           8 PVLS-ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV---CPA-ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG   82 (132)
Q Consensus         8 rv~v-~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~---~~~-~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~   82 (132)
                      ++++ +.+|+.+.-   ..++||+|++|...+..+.   ... ..-+-.+.++.+++.|+|||.+++-.-... .   ..
T Consensus       106 ~v~~~i~gD~~~~~---~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-~---~~  178 (290)
T 2xyq_A          106 DADSTLIGDCATVH---TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-W---NA  178 (290)
T ss_dssp             SSSEEEESCGGGCC---CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-C---CH
T ss_pred             CCEEEEECccccCC---ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-C---HH
Confidence            6778 999987632   2368999999976442101   001 111225789999999999999997431111 1   23


Q ss_pred             HHHHHHHhh-CCCceEeEEeccCcCCCceeEEEeec
Q psy4593          83 NTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQ  117 (132)
Q Consensus        83 ~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~  117 (132)
                      .+.+.+++. |..+...    .+.....-.|+++..
T Consensus       179 ~l~~~l~~~GF~~v~~~----asr~~s~e~~lv~~~  210 (290)
T 2xyq_A          179 DLYKLMGHFSWWTAFVT----NVNASSSEAFLIGAN  210 (290)
T ss_dssp             HHHHHHTTEEEEEEEEE----GGGTTSSCEEEEEEE
T ss_pred             HHHHHHHHcCCcEEEEE----EcCCCchheEEecCC
Confidence            566777776 8766653    222233344565543

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.16  E-value=0.00047  Score=52.87  Aligned_cols=81  Identities=9%  Similarity=0.019  Sum_probs=53.4

Q ss_pred             CCcEEEEc-cHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccc----cHHHHHHHHHhcCCCcEEEEecCCCCCChHHH
Q psy4593           7 YPVLSARQ-DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLF----QASYFELMSRALRPGGIVCSQAGTLWYSLDCV   81 (132)
Q Consensus         7 ~rv~v~~~-Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~----t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~   81 (132)
                      +++.++.+ |....    ..++||+|++|..-.   .+  ..+.    +...++.+++.|+|||.+++..-.+  .....
T Consensus       131 ~~v~~~~~~D~~~l----~~~~fD~V~sd~~~~---~g--~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~--~~~~~  199 (305)
T 2p41_A          131 NLVRLQSGVDVFFI----PPERCDTLLCDIGES---SP--NPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP--YMSSV  199 (305)
T ss_dssp             GGEEEECSCCTTTS----CCCCCSEEEECCCCC---CS--SHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC--CSHHH
T ss_pred             CCeEEEeccccccC----CcCCCCEEEECCccc---cC--cchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC--CCchH
Confidence            56777777 76542    346899999996421   01  1111    1147888999999999999864222  22345


Q ss_pred             HHHHHHHHhhCCCceEe
Q psy4593          82 GNTLQHCASVFPRVAYG   98 (132)
Q Consensus        82 ~~~~~~l~~vF~~v~~~   98 (132)
                      ..+++.+++.|..+...
T Consensus       200 ~~~l~~l~~~f~~v~~~  216 (305)
T 2p41_A          200 IEKMEALQRKHGGALVR  216 (305)
T ss_dssp             HHHHHHHHHHHCCEEEC
T ss_pred             HHHHHHHHHHcCCEEEe
Confidence            67788888889887653

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.14  E-value=0.00095  Score=48.84  Aligned_cols=65  Identities=12%  Similarity=0.132  Sum_probs=48.4

Q ss_pred             CCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|+.+++... .+..+|.|++...+|+... ..-..+...++++.+.+.|+|||++++.+
T Consensus       107 ~nv~~~~~D~~~~l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          107 QNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             TTEEEEECCTTSCGGGTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcEEEEeccHHHHHHHhccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence            57999999999877642 4578999998877774111 11234556899999999999999999854

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.11  E-value=0.00051  Score=50.42  Aligned_cols=55  Identities=13%  Similarity=0.106  Sum_probs=41.7

Q ss_pred             CCCcEEEEccHHHH--hcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH-hcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDF--MSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR-ALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~--l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~-~L~p~Gil~~~   70 (132)
                      .++++++.+|+.++  +....+..||+|++|....          --.++++.+++ .|+|||++++.
T Consensus       129 ~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~~~----------~~~~~l~~~~r~~LkpGG~lv~~  186 (236)
T 2bm8_A          129 MENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHA----------NTFNIMKWAVDHLLEEGDYFIIE  186 (236)
T ss_dssp             CTTEEEEECCSSCSGGGGGGSSSCSSEEEEESSCS----------SHHHHHHHHHHHTCCTTCEEEEC
T ss_pred             CCceEEEECcchhHHHHHhhccCCCCEEEECCchH----------hHHHHHHHHHHhhCCCCCEEEEE
Confidence            36899999999875  4331234799999987411          23678999997 99999999985

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.11  E-value=0.00058  Score=57.97  Aligned_cols=65  Identities=15%  Similarity=0.226  Sum_probs=45.9

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC-Cccc-----ccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP-AESL-----FQASYFELMSRALRPGGIVCSQAGT   73 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~-~~~L-----~t~eF~~~~~~~L~p~Gil~~~~~~   73 (132)
                      +++++++.+|+.+++.. ..++||+|++|.+--.  .+. ....     .-.++++.+.+.|+|||++++-+.+
T Consensus       589 ~~~v~~i~~D~~~~l~~-~~~~fD~Ii~DPP~f~--~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          589 GRAHRLIQADCLAWLRE-ANEQFDLIFIDPPTFS--NSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             STTEEEEESCHHHHHHH-CCCCEEEEEECCCSBC---------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccceEEEecCHHHHHHh-cCCCccEEEECCcccc--CCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            46899999999999987 5689999999974210  010 0011     1246788899999999999975433

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.09  E-value=0.00056  Score=48.79  Aligned_cols=56  Identities=7%  Similarity=0.090  Sum_probs=42.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHh--cCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRA--LRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~--L~p~Gil~~~~   71 (132)
                      ++++++.+|+.+++.. ..++||+|++|..     ...   -...++++.+.+.  |+|||++++..
T Consensus       103 ~~v~~~~~D~~~~~~~-~~~~fD~V~~~~p-----~~~---~~~~~~l~~l~~~~~L~pgG~l~i~~  160 (202)
T 2fpo_A          103 GNARVVNSNAMSFLAQ-KGTPHNIVFVDPP-----FRR---GLLEETINLLEDNGWLADEALIYVES  160 (202)
T ss_dssp             CSEEEECSCHHHHHSS-CCCCEEEEEECCS-----SST---TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             CcEEEEECCHHHHHhh-cCCCCCEEEECCC-----CCC---CcHHHHHHHHHhcCccCCCcEEEEEE
Confidence            5899999999999876 5678999999853     111   1235677887664  99999998754

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.08  E-value=0.00096  Score=51.32  Aligned_cols=51  Identities=12%  Similarity=-0.024  Sum_probs=41.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++++.+|+.++-    ++.||+|+++..-+          -..++++.+++.|+|||.+++..
T Consensus       172 ~~v~~v~gDa~~l~----d~~FDvV~~~a~~~----------d~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          172 DGVNVITGDETVID----GLEFDVLMVAALAE----------PKRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             CSEEEEESCGGGGG----GCCCSEEEECTTCS----------CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCeEEEECchhhCC----CCCcCEEEECCCcc----------CHHHHHHHHHHHcCCCcEEEEEc
Confidence            68999999998852    46899999875422          13689999999999999999864

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.08  E-value=0.0023  Score=45.79  Aligned_cols=86  Identities=13%  Similarity=0.023  Sum_probs=52.8

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC------------CCCcccccHHHHHHHHHhcCCCcEEEEecCCCC
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV------------CPAESLFQASYFELMSRALRPGGIVCSQAGTLW   75 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~------------~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~   75 (132)
                      +++++.+|+..+..- .+++||+|+.+..--....            +....-...++++.+++.|+|||.+++...+  
T Consensus       105 ~v~~~~~d~~~~~~~-~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--  181 (230)
T 3evz_A          105 NVRLVKSNGGIIKGV-VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD--  181 (230)
T ss_dssp             CCEEEECSSCSSTTT-CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES--
T ss_pred             CcEEEeCCchhhhhc-ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc--
Confidence            789999997543222 4578999998853110000            0001111278999999999999999875322  


Q ss_pred             CChHHHHHHHHHHHhhCCCceE
Q psy4593          76 YSLDCVGNTLQHCASVFPRVAY   97 (132)
Q Consensus        76 ~~~~~~~~~~~~l~~vF~~v~~   97 (132)
                       .......+.+.+++..-.+..
T Consensus       182 -~~~~~~~~~~~l~~~g~~~~~  202 (230)
T 3evz_A          182 -KEKLLNVIKERGIKLGYSVKD  202 (230)
T ss_dssp             -CHHHHHHHHHHHHHTTCEEEE
T ss_pred             -cHhHHHHHHHHHHHcCCceEE
Confidence             224456777777776334443

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.08  E-value=0.0005  Score=54.67  Aligned_cols=50  Identities=14%  Similarity=0.154  Sum_probs=42.2

Q ss_pred             cEEEEccHHHHhc-CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           9 VLSARQDCTDFMS-GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         9 v~v~~~Dg~~~l~-~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++.+|+.++++ . ..++||+|++|.+.      .     ..+|++.+.+.|++||++.+-
T Consensus       107 v~v~~~Da~~~l~~~-~~~~fD~V~lDP~g------~-----~~~~l~~a~~~Lk~gGll~~t  157 (392)
T 3axs_A          107 YEIHGMEANFFLRKE-WGFGFDYVDLDPFG------T-----PVPFIESVALSMKRGGILSLT  157 (392)
T ss_dssp             EEEECSCHHHHHHSC-CSSCEEEEEECCSS------C-----CHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEeCCHHHHHHHh-hCCCCcEEEECCCc------C-----HHHHHHHHHHHhCCCCEEEEE
Confidence            8999999999998 7 46789999999731      1     157999999999999999874

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=97.07  E-value=0.00082  Score=54.58  Aligned_cols=84  Identities=17%  Similarity=0.177  Sum_probs=55.0

Q ss_pred             cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC----Cccc-------------ccHHHHHHHHHhcCCCcEEEEec
Q psy4593           9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP----AESL-------------FQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~----~~~L-------------~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++.+|+.++... ..++||+|++|++-..  .+.    +...             ...++++.+.+.|+|||.++.-+
T Consensus       153 v~~~~~Da~~l~~~-~~~~FD~Il~D~PcSg--~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT  229 (464)
T 3m6w_A          153 LAVTQAPPRALAEA-FGTYFHRVLLDAPCSG--EGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST  229 (464)
T ss_dssp             CEEECSCHHHHHHH-HCSCEEEEEEECCCCC--GGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEEEECCHHHhhhh-ccccCCEEEECCCcCC--ccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            88999999997643 3578999999985321  221    1111             12789999999999999998765


Q ss_pred             CCCCCChHHHHHHHHHHHhhCCCceE
Q psy4593          72 GTLWYSLDCVGNTLQHCASVFPRVAY   97 (132)
Q Consensus        72 ~~~~~~~~~~~~~~~~l~~vF~~v~~   97 (132)
                      ++...  +.-..+++.+.+.+|+..+
T Consensus       230 Cs~~~--eEne~vv~~~l~~~~~~~l  253 (464)
T 3m6w_A          230 CTFAP--EENEGVVAHFLKAHPEFRL  253 (464)
T ss_dssp             SCCCG--GGTHHHHHHHHHHCTTEEE
T ss_pred             ccCch--hcCHHHHHHHHHHCCCcEE
Confidence            55332  2234555555555655443

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=97.06  E-value=0.00072  Score=54.76  Aligned_cols=82  Identities=11%  Similarity=0.083  Sum_probs=52.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCc------------c-----cccHHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAE------------S-----LFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~------------~-----L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      .++.++.+|+.++... .+++||+|++|++=..  .+.-.            .     -...++++.+.+.|+|||.++.
T Consensus       156 ~nv~v~~~Da~~l~~~-~~~~FD~Il~DaPCSg--~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvY  232 (456)
T 3m4x_A          156 SNAIVTNHAPAELVPH-FSGFFDRIVVDAPCSG--EGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIY  232 (456)
T ss_dssp             SSEEEECCCHHHHHHH-HTTCEEEEEEECCCCC--GGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CceEEEeCCHHHhhhh-ccccCCEEEECCCCCC--ccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            3688999999998654 3578999999985211  22110            0     1234889999999999999987


Q ss_pred             ecCCCCCChHHHHHHHHHHHhhCC
Q psy4593          70 QAGTLWYSLDCVGNTLQHCASVFP   93 (132)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~l~~vF~   93 (132)
                      .+++...  +.-..+++.+.+.++
T Consensus       233 sTCs~~~--eEne~vv~~~l~~~~  254 (456)
T 3m4x_A          233 STCTFAP--EENEEIISWLVENYP  254 (456)
T ss_dssp             EESCCCG--GGTHHHHHHHHHHSS
T ss_pred             EEeeccc--ccCHHHHHHHHHhCC
Confidence            6555322  223344455554444

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.06  E-value=0.00052  Score=52.34  Aligned_cols=56  Identities=9%  Similarity=-0.088  Sum_probs=46.6

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++++++.+|+.+.|.+....+||+|++|+--         .-.+.++|+.+...|+|||+++.-
T Consensus       188 ~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~---------y~~~~~~Le~~~p~L~pGGiIv~D  243 (282)
T 2wk1_A          188 DEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL---------YESTWDTLTNLYPKVSVGGYVIVD  243 (282)
T ss_dssp             STTEEEEESCHHHHSTTCCCCCEEEEEECCCS---------HHHHHHHHHHHGGGEEEEEEEEES
T ss_pred             cCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc---------cccHHHHHHHHHhhcCCCEEEEEc
Confidence            58999999999999987445789999999721         112578999999999999999983

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.05  E-value=0.00066  Score=47.65  Aligned_cols=87  Identities=14%  Similarity=0.101  Sum_probs=49.2

Q ss_pred             CCeecEEEEcCCCCCCCCCCC--cccc----cHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceEe
Q psy4593          25 KNMCGLVVSGAAGPGRVVCPA--ESLF----QASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYG   98 (132)
Q Consensus        25 ~~~yDvIi~D~~dp~~~~~~~--~~L~----t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~   98 (132)
                      +.+||+|+.|..-.+  .+..  ...-    ....++.+++.|+|||.+++....    .+....+.+.+++.|..+..+
T Consensus       104 ~~~fD~v~~~~~~~~--~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~----~~~~~~l~~~l~~~f~~v~~~  177 (201)
T 2plw_A          104 DKKIDIILSDAAVPC--IGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL----GSQTNNLKTYLKGMFQLVHTT  177 (201)
T ss_dssp             TCCEEEEEECCCCCC--CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC----STTHHHHHHHHHTTEEEEEEC
T ss_pred             CCcccEEEeCCCcCC--CCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC----CCCHHHHHHHHHHHHheEEEE
Confidence            368999999864321  1110  0000    124788899999999999975311    112456677788888877654


Q ss_pred             EEeccCcCCCceeEEEeecC
Q psy4593          99 ATCVPTYPSGQIGFVLGSQL  118 (132)
Q Consensus        99 ~~~~p~~~~~~~~f~~as~~  118 (132)
                      .... +.+...=.|++|.+.
T Consensus       178 ~~~~-~r~~s~e~y~v~~~~  196 (201)
T 2plw_A          178 KPKA-SRNESREIYLVCKNF  196 (201)
T ss_dssp             CCC------CCEEEEEEEEE
T ss_pred             CCcc-cCCcCceEEEEEecC
Confidence            3221 112223456777653

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.01  E-value=0.00044  Score=49.29  Aligned_cols=57  Identities=14%  Similarity=0.213  Sum_probs=42.2

Q ss_pred             CCcEEEEccHHHHhcCCCCCe-ecEEEEcCCCCCCCCCCCcccccHHHHHHH--HHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNM-CGLVVSGAAGPGRVVCPAESLFQASYFELM--SRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~-yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~--~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|+.+++....+++ ||+|++|..     ...   -...++++.+  .+.|+|||++++..
T Consensus       104 ~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~-----~~~---~~~~~~l~~~~~~~~LkpgG~l~i~~  163 (201)
T 2ift_A          104 EQAEVINQSSLDFLKQPQNQPHFDVVFLDPP-----FHF---NLAEQAISLLCENNWLKPNALIYVET  163 (201)
T ss_dssp             TTEEEECSCHHHHTTSCCSSCCEEEEEECCC-----SSS---CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             cceEEEECCHHHHHHhhccCCCCCEEEECCC-----CCC---ccHHHHHHHHHhcCccCCCcEEEEEE
Confidence            689999999999876523568 999999853     111   1235678888  56799999998754

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.01  E-value=0.00018  Score=52.06  Aligned_cols=54  Identities=19%  Similarity=0.243  Sum_probs=42.6

Q ss_pred             CCcEEEEccHHHHhcCCC-CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPV-KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~-~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+++.... +++||+|++|...+          -..++++.+.+.|+|||++++.
T Consensus       105 ~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~----------~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          105 SRIELLFGDALQLGEKLELYPLFDVLFIDAAKG----------QYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             TTEEEECSCGGGSHHHHTTSCCEEEEEEEGGGS----------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CcEEEEECCHHHHHHhcccCCCccEEEECCCHH----------HHHHHHHHHHHHcCCCeEEEEE
Confidence            579999999988765411 46899999986421          2478999999999999999985

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.99  E-value=0.0028  Score=48.40  Aligned_cols=81  Identities=9%  Similarity=0.041  Sum_probs=55.1

Q ss_pred             CCCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH--hcCCCcEEEEecCCCCCChHHH
Q psy4593           6 GYPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR--ALRPGGIVCSQAGTLWYSLDCV   81 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~--~L~p~Gil~~~~~~~~~~~~~~   81 (132)
                      +++++|+..||.++|+..  ...+||+|++|.+     .... ..+. +-.+.+.+  .+.|+|++++|-  |..+....
T Consensus       136 ~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP-----Ye~k-~~~~-~vl~~L~~~~~r~~~Gi~v~WY--Pi~~~~~~  206 (283)
T 2oo3_A          136 NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS-----YERK-EEYK-EIPYAIKNAYSKFSTGLYCVWY--PVVNKAWT  206 (283)
T ss_dssp             TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC-----CCST-THHH-HHHHHHHHHHHHCTTSEEEEEE--EESSHHHH
T ss_pred             CCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC-----CCCC-cHHH-HHHHHHHHhCccCCCeEEEEEE--eccchHHH
Confidence            478999999999999752  3457999999973     1111 1222 22333333  567999999985  55667778


Q ss_pred             HHHHHHHHhhCCCc
Q psy4593          82 GNTLQHCASVFPRV   95 (132)
Q Consensus        82 ~~~~~~l~~vF~~v   95 (132)
                      ..+.+.|++.-..+
T Consensus       207 ~~~~~~l~~~~~~~  220 (283)
T 2oo3_A          207 EQFLRKMREISSKS  220 (283)
T ss_dssp             HHHHHHHHHHCSSE
T ss_pred             HHHHHHHHhcCCCe
Confidence            88999997653333

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=96.97  E-value=0.0011  Score=50.40  Aligned_cols=50  Identities=14%  Similarity=0.161  Sum_probs=40.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++++.+|++++..+   ..||.|+.|.+-           .+.+|+..+.++|++||++...
T Consensus       175 ~~v~~~~~D~~~~~~~---~~~D~Vi~~~p~-----------~~~~~l~~a~~~lk~gG~ih~~  224 (278)
T 3k6r_A          175 DRMSAYNMDNRDFPGE---NIADRILMGYVV-----------RTHEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             TTEEEECSCTTTCCCC---SCEEEEEECCCS-----------SGGGGHHHHHHHEEEEEEEEEE
T ss_pred             CcEEEEeCcHHHhccc---cCCCEEEECCCC-----------cHHHHHHHHHHHcCCCCEEEEE
Confidence            5799999999998654   689999988631           2367899999999999998654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=96.96  E-value=0.0046  Score=43.56  Aligned_cols=57  Identities=16%  Similarity=0.106  Sum_probs=40.7

Q ss_pred             CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++..|........  ...+||+|++...     ..   .---..+++.+++.|+|||.+++..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~-----l~---~~~~~~~l~~~~~~L~pgG~l~~~~  152 (227)
T 3e8s_A           94 GAGEVHLASYAQLAEAKVPVGKDYDLICANFA-----LL---HQDIIELLSAMRTLLVPGGALVIQT  152 (227)
T ss_dssp             CSSCEEECCHHHHHTTCSCCCCCEEEEEEESC-----CC---SSCCHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccccchhhHHhhcccccccCCCccEEEECch-----hh---hhhHHHHHHHHHHHhCCCeEEEEEe
Confidence            56778899988873321  3456999997532     11   1123689999999999999999854

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=96.96  E-value=0.0011  Score=52.14  Aligned_cols=74  Identities=11%  Similarity=0.012  Sum_probs=50.2

Q ss_pred             CcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCC-ccc-----ccHHHHHHHHHhcCCCcEEEEecCCCCCChH
Q psy4593           8 PVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPA-ESL-----FQASYFELMSRALRPGGIVCSQAGTLWYSLD   79 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~-~~L-----~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~   79 (132)
                      +++++.+|+.+++...  ...+||+|++|.+--    ... ..+     -..++++.+.+.|+|||+++..+.+.....+
T Consensus       268 ~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~----~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~  343 (396)
T 2as0_A          268 RMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAF----VQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQ  343 (396)
T ss_dssp             GEEEEESCHHHHHHHHHHTTCCEEEEEECCCCS----CSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHH
T ss_pred             cceEEECCHHHHHHHHHhhCCCCCEEEECCCCC----CCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHH
Confidence            7899999999987531  246899999997421    111 111     1357889999999999998876655555544


Q ss_pred             HHHHHH
Q psy4593          80 CVGNTL   85 (132)
Q Consensus        80 ~~~~~~   85 (132)
                      .+..++
T Consensus       344 ~~~~~v  349 (396)
T 2as0_A          344 MFKDMI  349 (396)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=96.92  E-value=0.0029  Score=49.89  Aligned_cols=80  Identities=10%  Similarity=0.100  Sum_probs=54.0

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH   87 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~   87 (132)
                      +++++.+|+.+....  +++||+|+++..-..  ......-...++++.+++.|+|||++++-+... .      .....
T Consensus       281 ~v~~~~~D~~~~~~~--~~~fD~Ii~npp~~~--~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~-l------~~~~~  349 (381)
T 3dmg_A          281 KAQALHSDVDEALTE--EARFDIIVTNPPFHV--GGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF-L------KYEPL  349 (381)
T ss_dssp             CCEEEECSTTTTSCT--TCCEEEEEECCCCCT--TCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT-S------CHHHH
T ss_pred             CeEEEEcchhhcccc--CCCeEEEEECCchhh--cccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC-C------ChHHH
Confidence            488999999886543  478999999854221  011111224689999999999999998754222 1      23356


Q ss_pred             HHhhCCCceEe
Q psy4593          88 CASVFPRVAYG   98 (132)
Q Consensus        88 l~~vF~~v~~~   98 (132)
                      +++.|.++...
T Consensus       350 l~~~f~~v~~l  360 (381)
T 3dmg_A          350 LEEKFGAFQTL  360 (381)
T ss_dssp             HHHHHSCCEEE
T ss_pred             HHHhhccEEEE
Confidence            77788888764

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=96.92  E-value=0.0003  Score=48.58  Aligned_cols=56  Identities=9%  Similarity=0.050  Sum_probs=42.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHH--HhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMS--RALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~--~~L~p~Gil~~~~   71 (132)
                      ++++++.+|+.+++.. .+++||+|+.|..     ..   .-...++++.+.  +.|+|||++++..
T Consensus        81 ~~~~~~~~d~~~~~~~-~~~~fD~i~~~~~-----~~---~~~~~~~~~~l~~~~~L~~gG~l~~~~  138 (177)
T 2esr_A           81 NRFTLLKMEAERAIDC-LTGRFDLVFLDPP-----YA---KETIVATIEALAAKNLLSEQVMVVCET  138 (177)
T ss_dssp             GGEEEECSCHHHHHHH-BCSCEEEEEECCS-----SH---HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             CceEEEECcHHHhHHh-hcCCCCEEEECCC-----CC---cchHHHHHHHHHhCCCcCCCcEEEEEE
Confidence            4789999999998765 4567999999842     11   112367788887  8999999999864

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.91  E-value=0.0034  Score=43.40  Aligned_cols=60  Identities=10%  Similarity=-0.027  Sum_probs=38.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCC----cccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPA----ESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~----~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|......- .+++||+|+.+. +-|   ....    ..--..++++.+++.|+|||.+++-
T Consensus        70 ~~v~~~~~~~~~l~~~-~~~~fD~v~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  134 (185)
T 3mti_A           70 ENTELILDGHENLDHY-VREPIRAAIFNLGYLP---SADKSVITKPHTTLEAIEKILDRLEVGGRLAIM  134 (185)
T ss_dssp             CCEEEEESCGGGGGGT-CCSCEEEEEEEEC--------------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcEEEEeCcHHHHHhh-ccCCcCEEEEeCCCCC---CcchhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence            6788888776653333 457899999884 222   1100    1112357889999999999999864

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=96.87  E-value=0.0012  Score=50.97  Aligned_cols=65  Identities=6%  Similarity=0.022  Sum_probs=47.2

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      ++++++.+|+.+++     ++||+|++|.+.-           ..++++.+.+.|+|||+++....+..     .....+
T Consensus       243 ~~v~~~~~D~~~~~-----~~fD~Vi~dpP~~-----------~~~~l~~~~~~L~~gG~l~~~~~~~~-----~~~~~~  301 (336)
T 2yx1_A          243 HKIIPILSDVREVD-----VKGNRVIMNLPKF-----------AHKFIDKALDIVEEGGVIHYYTIGKD-----FDKAIK  301 (336)
T ss_dssp             TTEEEEESCGGGCC-----CCEEEEEECCTTT-----------GGGGHHHHHHHEEEEEEEEEEEEESS-----SHHHHH
T ss_pred             CcEEEEECChHHhc-----CCCcEEEECCcHh-----------HHHHHHHHHHHcCCCCEEEEEEeecC-----chHHHH
Confidence            57999999999886     5799999986311           23889999999999999887543332     233444


Q ss_pred             HHHhhC
Q psy4593          87 HCASVF   92 (132)
Q Consensus        87 ~l~~vF   92 (132)
                      .+++.+
T Consensus       302 ~l~~~~  307 (336)
T 2yx1_A          302 LFEKKC  307 (336)
T ss_dssp             HHHHHS
T ss_pred             HHHHhc
Confidence            555554

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.86  E-value=0.0021  Score=51.19  Aligned_cols=65  Identities=9%  Similarity=0.039  Sum_probs=43.1

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC----Ccc-------------cccHHHHHHHHHhcCCCcEEEEe
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP----AES-------------LFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~----~~~-------------L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++++.+|+.+........+||+|++|++-..  .+.    +..             -...++++.+.+.|+|||.++.-
T Consensus       296 ~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg--~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvys  373 (429)
T 1sqg_A          296 KATVKQGDGRYPSQWCGEQQFDRILLDAPCSA--TGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYA  373 (429)
T ss_dssp             CCEEEECCTTCTHHHHTTCCEEEEEEECCCCC--GGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CeEEEeCchhhchhhcccCCCCEEEEeCCCCc--ccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            47888999876542112368999999975221  221    100             01258899999999999999976


Q ss_pred             cCCC
Q psy4593          71 AGTL   74 (132)
Q Consensus        71 ~~~~   74 (132)
                      .++.
T Consensus       374 tcs~  377 (429)
T 1sqg_A          374 TCSV  377 (429)
T ss_dssp             ESCC
T ss_pred             ECCC
Confidence            5443

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=96.82  E-value=0.0026  Score=45.21  Aligned_cols=58  Identities=12%  Similarity=0.048  Sum_probs=39.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++++.+|+... .- .+++||+|++...-.    ..+..-....+++.+++.|+|||.+++.
T Consensus        83 ~~~~~~~~d~~~~-~~-~~~~~D~v~~~~~l~----~~~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (235)
T 3sm3_A           83 GKAEFKVENASSL-SF-HDSSFDFAVMQAFLT----SVPDPKERSRIIKEVFRVLKPGAYLYLV  140 (235)
T ss_dssp             CEEEEEECCTTSC-CS-CTTCEEEEEEESCGG----GCCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceEEEEeccccc-CC-CCCceeEEEEcchhh----cCCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            4678999997653 22 467899999753211    1111111237999999999999999875

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=96.81  E-value=0.0029  Score=48.36  Aligned_cols=64  Identities=19%  Similarity=0.186  Sum_probs=43.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC----Cccc-------------ccHHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP----AESL-------------FQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~----~~~L-------------~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ++++++.+|+.++...  .++||+|++|+.-..  .+.    +...             ...++++.+.+.|+|||.++.
T Consensus       169 ~~v~~~~~D~~~~~~~--~~~fD~Il~d~Pcsg--~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~  244 (315)
T 1ixk_A          169 LNVILFHSSSLHIGEL--NVEFDKILLDAPCTG--SGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVY  244 (315)
T ss_dssp             CSEEEESSCGGGGGGG--CCCEEEEEEECCTTS--TTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CeEEEEECChhhcccc--cccCCEEEEeCCCCC--cccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence            4689999999886542  457999999975211  121    1000             125899999999999999988


Q ss_pred             ecCCC
Q psy4593          70 QAGTL   74 (132)
Q Consensus        70 ~~~~~   74 (132)
                      -+++.
T Consensus       245 stcs~  249 (315)
T 1ixk_A          245 STCSL  249 (315)
T ss_dssp             EESCC
T ss_pred             EeCCC
Confidence            65443

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=96.80  E-value=0.0012  Score=46.46  Aligned_cols=90  Identities=12%  Similarity=0.061  Sum_probs=53.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      ++++++.+|+.++.   ..++||+|+.....+           -..+++.+++.|+|||.+++..+.  ...+.+..+  
T Consensus       115 ~~v~~~~~d~~~~~---~~~~~D~i~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~--  176 (207)
T 1jsx_A          115 ENIEPVQSRVEEFP---SEPPFDGVISRAFAS-----------LNDMVSWCHHLPGEQGRFYALKGQ--MPEDEIALL--  176 (207)
T ss_dssp             SSEEEEECCTTTSC---CCSCEEEEECSCSSS-----------HHHHHHHHTTSEEEEEEEEEEESS--CCHHHHHTS--
T ss_pred             CCeEEEecchhhCC---ccCCcCEEEEeccCC-----------HHHHHHHHHHhcCCCcEEEEEeCC--CchHHHHHH--
Confidence            34889999987754   236899999764322           268999999999999999986433  222222222  


Q ss_pred             HHHhhCCCceEeEEeccCcCCCceeEEEeec
Q psy4593          87 HCASVFPRVAYGATCVPTYPSGQIGFVLGSQ  117 (132)
Q Consensus        87 ~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~  117 (132)
                        .+.|..+.......|.+. +...++++.+
T Consensus       177 --~~g~~~~~~~~~~~~~~~-~~~~~~~~~k  204 (207)
T 1jsx_A          177 --PEEYQVESVVKLQVPALD-GERHLVVIKA  204 (207)
T ss_dssp             --CTTEEEEEEEEEECC--C-CEEEEEEEEE
T ss_pred             --hcCCceeeeeeeccCCCC-CceEEEEEEe
Confidence              124444443333466653 3455555544

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=96.79  E-value=0.002  Score=46.53  Aligned_cols=59  Identities=7%  Similarity=0.030  Sum_probs=42.8

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      +++++.+|+.+++....+++||+|++...-.+   -+..  --..+++.+++.|+|||.+++..
T Consensus        82 ~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~---~~~~--~~~~~l~~~~~~LkpgG~l~~~~  140 (240)
T 3dli_A           82 KFNVVKSDAIEYLKSLPDKYLDGVMISHFVEH---LDPE--RLFELLSLCYSKMKYSSYIVIES  140 (240)
T ss_dssp             TSEEECSCHHHHHHTSCTTCBSEEEEESCGGG---SCGG--GHHHHHHHHHHHBCTTCCEEEEE
T ss_pred             hcceeeccHHHHhhhcCCCCeeEEEECCchhh---CCcH--HHHHHHHHHHHHcCCCcEEEEEe
Confidence            37889999999875545689999997432110   1110  12789999999999999998764

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=96.76  E-value=0.0075  Score=43.32  Aligned_cols=81  Identities=11%  Similarity=-0.010  Sum_probs=49.2

Q ss_pred             CCcEEEEccHHHHhc-CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec--CC--CCCC-hHH
Q psy4593           7 YPVLSARQDCTDFMS-GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA--GT--LWYS-LDC   80 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~-~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~--~~--~~~~-~~~   80 (132)
                      +++..+.+|+..... ....++||+|++|..++         .-...+++.+++.|+|||.+++..  .+  .... .+.
T Consensus       105 ~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~~~---------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~  175 (210)
T 1nt2_A          105 NNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQK---------NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEV  175 (210)
T ss_dssp             SSEEEECSCTTCGGGTTTTCCCEEEEEECCCST---------THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHH
T ss_pred             CCeEEEEcCCCCchhhcccccceeEEEEeccCh---------hHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHH
Confidence            467778888776421 11236899999996433         112356899999999999998752  11  1112 223


Q ss_pred             HHHHHHHHHhhCCCce
Q psy4593          81 VGNTLQHCASVFPRVA   96 (132)
Q Consensus        81 ~~~~~~~l~~vF~~v~   96 (132)
                      ++..++.+++.|.-+.
T Consensus       176 ~~~~~~~l~~~f~~~~  191 (210)
T 1nt2_A          176 FKSVLKEMEGDFKIVK  191 (210)
T ss_dssp             HHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHhhcEEee
Confidence            3344555776665444

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.73  E-value=0.0033  Score=47.08  Aligned_cols=58  Identities=12%  Similarity=-0.005  Sum_probs=40.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC----cccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA----ESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~----~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++++.+|+.++     +++||+|+....-.+  ..-+    ..-.-..+++.+++.|+|||.+++..
T Consensus       122 ~~v~~~~~d~~~~-----~~~fD~v~~~~~~~~--~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  183 (302)
T 3hem_A          122 RRKEVRIQGWEEF-----DEPVDRIVSLGAFEH--FADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  183 (302)
T ss_dssp             SCEEEEECCGGGC-----CCCCSEEEEESCGGG--TTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred             CceEEEECCHHHc-----CCCccEEEEcchHHh--cCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            4799999998775     468999997432110  1001    11233789999999999999999864

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=96.69  E-value=0.0015  Score=51.49  Aligned_cols=50  Identities=12%  Similarity=0.254  Sum_probs=41.7

Q ss_pred             cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++.+|+.+++.. ..++||+|++|.+-.           ..+|++.+.+.|+++|++.+.
T Consensus       114 i~v~~~Da~~~~~~-~~~~fD~I~lDP~~~-----------~~~~l~~a~~~lk~gG~l~vt  163 (378)
T 2dul_A          114 IVINHDDANRLMAE-RHRYFHFIDLDPFGS-----------PMEFLDTALRSAKRRGILGVT  163 (378)
T ss_dssp             EEEEESCHHHHHHH-STTCEEEEEECCSSC-----------CHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEcCcHHHHHHh-ccCCCCEEEeCCCCC-----------HHHHHHHHHHhcCCCCEEEEE
Confidence            89999999999876 456899999986421           268999999999999998774

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=96.69  E-value=0.0022  Score=52.06  Aligned_cols=65  Identities=26%  Similarity=0.284  Sum_probs=45.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC----Cccc-------------ccHHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP----AESL-------------FQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~----~~~L-------------~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ++++++.+|+.++... ..++||+|++|++-..  .+.    +...             ...++++.+.+.|+|||.++.
T Consensus       168 ~nv~~~~~D~~~~~~~-~~~~fD~Il~D~PcSg--~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lvy  244 (479)
T 2frx_A          168 SNVALTHFDGRVFGAA-VPEMFDAILLDAPCSG--EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY  244 (479)
T ss_dssp             CSEEEECCCSTTHHHH-STTCEEEEEEECCCCC--GGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CcEEEEeCCHHHhhhh-ccccCCEEEECCCcCC--cccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            4688999999887543 3468999999975211  211    1111             135788999999999999997


Q ss_pred             ecCCC
Q psy4593          70 QAGTL   74 (132)
Q Consensus        70 ~~~~~   74 (132)
                      -+++.
T Consensus       245 sTcs~  249 (479)
T 2frx_A          245 STCTL  249 (479)
T ss_dssp             EESCC
T ss_pred             ecccC
Confidence            65554

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=96.69  E-value=0.0027  Score=43.75  Aligned_cols=78  Identities=13%  Similarity=0.151  Sum_probs=49.6

Q ss_pred             CcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC--C----CCCChHH
Q psy4593           8 PVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG--T----LWYSLDC   80 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~--~----~~~~~~~   80 (132)
                      +++++.+|+.+.-.. ..+++||+|+.-..-.+  . .+ .  ..++++.+++.|+|||.+++...  .    .... ..
T Consensus        43 ~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~--~-~~-~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~-~~  115 (176)
T 2ld4_A           43 EGRVSVENIKQLLQSAHKESSFDIILSGLVPGS--T-TL-H--SAEILAEIARILRPGGCLFLKEPVETAVDNNSKV-KT  115 (176)
T ss_dssp             TSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTC--C-CC-C--CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSS-CC
T ss_pred             CcEEEEechhcCccccCCCCCEeEEEECChhhh--c-cc-C--HHHHHHHHHHHCCCCEEEEEEccccccccccccc-CC
Confidence            588999998875431 13578999997332111  1 01 1  28899999999999999987421  0    0111 11


Q ss_pred             HHHHHHHHHhh-C
Q psy4593          81 VGNTLQHCASV-F   92 (132)
Q Consensus        81 ~~~~~~~l~~v-F   92 (132)
                      ...+.+.|++. |
T Consensus       116 ~~~~~~~l~~aGf  128 (176)
T 2ld4_A          116 ASKLCSALTLSGL  128 (176)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCC
Confidence            45677777766 8

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=96.67  E-value=0.0053  Score=46.34  Aligned_cols=81  Identities=14%  Similarity=0.099  Sum_probs=53.6

Q ss_pred             CcEEE--EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCccc---ccHHHHHHHHHhcCCCc--EEEEecCCCCCChHH
Q psy4593           8 PVLSA--RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESL---FQASYFELMSRALRPGG--IVCSQAGTLWYSLDC   80 (132)
Q Consensus         8 rv~v~--~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L---~t~eF~~~~~~~L~p~G--il~~~~~~~~~~~~~   80 (132)
                      ++.++  .+|+.++    .+++||+|++|.. .   ..+...+   -+...++.+.+.|+|||  .+++..-++.  ...
T Consensus       131 ~v~~~~~~~D~~~l----~~~~fD~Vvsd~~-~---~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~--~~~  200 (276)
T 2wa2_A          131 NLITFKSKVDVTKM----EPFQADTVLCDIG-E---SNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPY--SCD  200 (276)
T ss_dssp             GGEEEECSCCGGGC----CCCCCSEEEECCC-C---CCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCC--SHH
T ss_pred             CeEEEeccCcHhhC----CCCCcCEEEECCC-c---CCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCC--chh
Confidence            67788  8887762    3568999999975 2   2211110   01237888999999999  8887532332  233


Q ss_pred             HHHHHHHHHhhCCCceEe
Q psy4593          81 VGNTLQHCASVFPRVAYG   98 (132)
Q Consensus        81 ~~~~~~~l~~vF~~v~~~   98 (132)
                      ...+++.+++.|..+.+.
T Consensus       201 ~~~~l~~l~~~f~~v~v~  218 (276)
T 2wa2_A          201 VLEALMKMQARFGGGLIR  218 (276)
T ss_dssp             HHHHHHHHHHHHCCEEEC
T ss_pred             HHHHHHHHHHHcCCEEEE
Confidence            456777888899888763

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=96.67  E-value=0.0025  Score=51.07  Aligned_cols=66  Identities=17%  Similarity=0.165  Sum_probs=44.3

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC----Cc--------c---c--ccHHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP----AE--------S---L--FQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~----~~--------~---L--~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ++++++.+|+.++.....+++||+|++|++-..  .+.    +.        .   +  ...++++.+.+.|+|||.++.
T Consensus       310 ~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg--~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy  387 (450)
T 2yxl_A          310 KIVKPLVKDARKAPEIIGEEVADKVLLDAPCTS--SGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLY  387 (450)
T ss_dssp             CSEEEECSCTTCCSSSSCSSCEEEEEEECCCCC--GGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CcEEEEEcChhhcchhhccCCCCEEEEcCCCCC--CeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            468899999877543312368999999974321  221    00        0   0  126889999999999999997


Q ss_pred             ecCCC
Q psy4593          70 QAGTL   74 (132)
Q Consensus        70 ~~~~~   74 (132)
                      -.++.
T Consensus       388 ~tcs~  392 (450)
T 2yxl_A          388 TTCSI  392 (450)
T ss_dssp             EESCC
T ss_pred             EeCCC
Confidence            65443

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=96.66  E-value=0.0033  Score=49.07  Aligned_cols=50  Identities=4%  Similarity=-0.076  Sum_probs=38.3

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG   65 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G   65 (132)
                      |++++.+|+.+++....+++||+|++|.+     .... .  -.+|++.+.+.|+|||
T Consensus       222 ~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p-----~~~~-~--~~~~l~~~~~~LkpgG  271 (373)
T 2qm3_A          222 DIEIFTFDLRKPLPDYALHKFDTFITDPP-----ETLE-A--IRAFVGRGIATLKGPR  271 (373)
T ss_dssp             CEEEECCCTTSCCCTTTSSCBSEEEECCC-----SSHH-H--HHHHHHHHHHTBCSTT
T ss_pred             CEEEEEChhhhhchhhccCCccEEEECCC-----CchH-H--HHHHHHHHHHHcccCC
Confidence            79999999988654312468999999973     2211 2  2899999999999999

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=96.66  E-value=0.013  Score=43.44  Aligned_cols=97  Identities=18%  Similarity=0.196  Sum_probs=58.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCC----------CCCCccc--------ccHHHHHHHHHhcCCCcEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRV----------VCPAESL--------FQASYFELMSRALRPGGIVC   68 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~----------~~~~~~L--------~t~eF~~~~~~~L~p~Gil~   68 (132)
                      ++++++.+|..+.+.   .++||+|+.+.+-....          ..|...|        .-..+++.+++.|+|||+++
T Consensus       159 ~~v~~~~~d~~~~~~---~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~  235 (276)
T 2b3t_A          159 KNIHILQSDWFSALA---GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLL  235 (276)
T ss_dssp             CSEEEECCSTTGGGT---TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred             CceEEEEcchhhhcc---cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence            478999999887653   35799999985321000          0111122        23678899999999999999


Q ss_pred             EecCCCCCChHHHHHHHHHHHhh-CCCceEeEEeccCcCCCceeEEEee
Q psy4593          69 SQAGTLWYSLDCVGNTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGS  116 (132)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as  116 (132)
                      +..+  +.+.+   .+.+.+++. |..+....    .+ .|.-.+++|.
T Consensus       236 ~~~~--~~~~~---~~~~~l~~~Gf~~v~~~~----d~-~g~~r~~~~~  274 (276)
T 2b3t_A          236 LEHG--WQQGE---AVRQAFILAGYHDVETCR----DY-GDNERVTLGR  274 (276)
T ss_dssp             EECC--SSCHH---HHHHHHHHTTCTTCCEEE----CT-TSSEEEEEEE
T ss_pred             EEEC--chHHH---HHHHHHHHCCCcEEEEEe----cC-CCCCcEEEEE
Confidence            8642  23333   344445444 77666532    33 2355556554

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=96.64  E-value=0.0017  Score=51.11  Aligned_cols=79  Identities=9%  Similarity=-0.035  Sum_probs=50.6

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH   87 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~   87 (132)
                      +++++.+|+.+.+   .+++||+|++|..=..  ......-...++++.+++.|+|||++++-+.. ...      ....
T Consensus       276 ~v~~~~~D~~~~~---~~~~fD~Ii~nppfh~--~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~-~~~------~~~~  343 (375)
T 4dcm_A          276 RCEFMINNALSGV---EPFRFNAVLCNPPFHQ--QHALTDNVAWEMFHHARRCLKINGELYIVANR-HLD------YFHK  343 (375)
T ss_dssp             GEEEEECSTTTTC---CTTCEEEEEECCCC---------CCHHHHHHHHHHHHEEEEEEEEEEEET-TSC------HHHH
T ss_pred             eEEEEechhhccC---CCCCeeEEEECCCccc--CcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC-CcC------HHHH
Confidence            5677999988754   3468999999854210  00111223458999999999999999873211 111      1356


Q ss_pred             HHhhCCCceEe
Q psy4593          88 CASVFPRVAYG   98 (132)
Q Consensus        88 l~~vF~~v~~~   98 (132)
                      +++.|.++...
T Consensus       344 l~~~fg~~~~~  354 (375)
T 4dcm_A          344 LKKIFGNCTTI  354 (375)
T ss_dssp             HHHHHSCCEEE
T ss_pred             HHHhcCCEEEE
Confidence            77888888764

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=96.61  E-value=0.011  Score=42.18  Aligned_cols=56  Identities=16%  Similarity=0.149  Sum_probs=38.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+..   ..++||+|++...-.    .. ...-..++++.+++.|+|||.+++.
T Consensus        92 ~~~~~~~~d~~~~~---~~~~fD~v~~~~~l~----~~-~~~~~~~~l~~~~~~LkpgG~l~~~  147 (234)
T 3dtn_A           92 LKVKYIEADYSKYD---FEEKYDMVVSALSIH----HL-EDEDKKELYKRSYSILKESGIFINA  147 (234)
T ss_dssp             TTEEEEESCTTTCC---CCSCEEEEEEESCGG----GS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEEeCchhccC---CCCCceEEEEeCccc----cC-CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            37899999986642   227899999864211    11 1111235899999999999999874

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=96.60  E-value=0.0012  Score=47.78  Aligned_cols=54  Identities=15%  Similarity=0.116  Sum_probs=40.4

Q ss_pred             CCcEEEEccHHHHh--cCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFM--SGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l--~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+..  .. ..++||+|++|...++         -...+++.+++.|+|||++++.
T Consensus       126 ~~v~~~~~d~~~~~~~~~-~~~~~D~V~~~~~~~~---------~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          126 TNIIPVIEDARHPHKYRM-LIAMVDVIFADVAQPD---------QTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             TTEEEECSCTTCGGGGGG-GCCCEEEEEECCCCTT---------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCeEEEEcccCChhhhcc-cCCcEEEEEEcCCCcc---------HHHHHHHHHHHHcCCCeEEEEE
Confidence            67899999987742  22 3468999999875431         1255688899999999999874

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=96.58  E-value=0.0054  Score=45.95  Aligned_cols=99  Identities=9%  Similarity=-0.035  Sum_probs=60.6

Q ss_pred             CcEEE--EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCccc---ccHHHHHHHHHhcCCCc--EEEEecCCCCCChHH
Q psy4593           8 PVLSA--RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESL---FQASYFELMSRALRPGG--IVCSQAGTLWYSLDC   80 (132)
Q Consensus         8 rv~v~--~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L---~t~eF~~~~~~~L~p~G--il~~~~~~~~~~~~~   80 (132)
                      ++.++  .+|+.++    .+++||+|++|.. .   ..+...+   -+...++.+++.|+|||  .+++..-++.  ...
T Consensus       123 ~v~~~~~~~D~~~l----~~~~fD~V~sd~~-~---~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~--~~~  192 (265)
T 2oxt_A          123 NIVKFKSRVDIHTL----PVERTDVIMCDVG-E---SSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPY--SVE  192 (265)
T ss_dssp             GGEEEECSCCTTTS----CCCCCSEEEECCC-C---CCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTT--SHH
T ss_pred             CeEEEecccCHhHC----CCCCCcEEEEeCc-c---cCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCC--Chh
Confidence            57777  7887662    3568999999976 2   2211111   01237889999999999  8887542322  223


Q ss_pred             HHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecC
Q psy4593          81 VGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQL  118 (132)
Q Consensus        81 ~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~  118 (132)
                      ...+++.+++.|..+.+..  ..+.....-.|++|...
T Consensus       193 ~~~~l~~l~~~f~~v~~~k--~~sR~~s~E~y~v~~~~  228 (265)
T 2oxt_A          193 VMERLSVMQRKWGGGLVRN--PYSRNSTHEMYFTSRAG  228 (265)
T ss_dssp             HHHHHHHHHHHHCCEEECC--TTSCTTCCCEEEESSCC
T ss_pred             HHHHHHHHHHHcCCEEEEE--ecccCCCccEEEEecCC
Confidence            4467788888898887643  22233333445565433

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=96.58  E-value=0.0094  Score=46.80  Aligned_cols=82  Identities=15%  Similarity=0.062  Sum_probs=53.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCC---CCCC-Cc-------------ccccHHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGR---VVCP-AE-------------SLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~---~~~~-~~-------------~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      .++++...||+.+-.. ..++||.|++|++=...   .... +.             .-...+.++.+.+.|+|||.++-
T Consensus       204 ~~v~v~~~D~~~~~~~-~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVY  282 (359)
T 4fzv_A          204 NQVRVTSWDGRKWGEL-EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVY  282 (359)
T ss_dssp             SSEEEECCCGGGHHHH-STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CceEEEeCchhhcchh-ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            5788999999998655 56789999999862210   0011 11             11345778888999999999986


Q ss_pred             ecCCCCC--ChHHHHHHHHHHH
Q psy4593          70 QAGTLWY--SLDCVGNTLQHCA   89 (132)
Q Consensus        70 ~~~~~~~--~~~~~~~~~~~l~   89 (132)
                      -++|...  +...+..+++...
T Consensus       283 sTCSl~~~ENE~vV~~~L~~~~  304 (359)
T 4fzv_A          283 STCSLSHLQNEYVVQGAIELLA  304 (359)
T ss_dssp             EESCCCTTTTHHHHHHHHHHHH
T ss_pred             EeCCCchhhCHHHHHHHHHhCC
Confidence            5555443  3445555555443

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=96.57  E-value=0.0064  Score=45.29  Aligned_cols=56  Identities=18%  Similarity=0.184  Sum_probs=37.3

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ..+++++.+|..++    ..+.||+|++-..-.+   -++.  --..+++.+++.|+|||++++.
T Consensus       122 ~~~v~~~~~D~~~~----~~~~~d~v~~~~~l~~---~~~~--~~~~~l~~i~~~LkpGG~lii~  177 (261)
T 4gek_A          122 PTPVDVIEGDIRDI----AIENASMVVLNFTLQF---LEPS--ERQALLDKIYQGLNPGGALVLS  177 (261)
T ss_dssp             SSCEEEEESCTTTC----CCCSEEEEEEESCGGG---SCHH--HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEeecccccc----cccccccceeeeeeee---cCch--hHhHHHHHHHHHcCCCcEEEEE
Confidence            35788889997553    3356999987543210   1110  1246899999999999999863

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=96.57  E-value=0.006  Score=42.74  Aligned_cols=56  Identities=20%  Similarity=0.129  Sum_probs=40.7

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++++++.+|+.+. .- .+++||+|+....-.+  .  .   -..++++.+++.|+|||.+++.
T Consensus        92 ~~~~~~~~~d~~~~-~~-~~~~~D~v~~~~~l~~--~--~---~~~~~l~~~~~~L~pgG~l~~~  147 (219)
T 3dlc_A           92 NDRIQIVQGDVHNI-PI-EDNYADLIVSRGSVFF--W--E---DVATAFREIYRILKSGGKTYIG  147 (219)
T ss_dssp             TTTEEEEECBTTBC-SS-CTTCEEEEEEESCGGG--C--S---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCceEEEEcCHHHC-CC-CcccccEEEECchHhh--c--c---CHHHHHHHHHHhCCCCCEEEEE
Confidence            35899999998662 22 4578999998643221  1  1   1367999999999999999875

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=96.57  E-value=0.014  Score=41.37  Aligned_cols=53  Identities=9%  Similarity=-0.000  Sum_probs=36.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccc---cHHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLF---QASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~---t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ++++++.+|+. .+.. ..++||+|+....-        .++-   -..+++.+++.|+|||+++.
T Consensus        84 ~~v~~~~~d~~-~~~~-~~~~fD~V~~~~~l--------~~~~~~~~~~~l~~~~~~LkpgG~~i~  139 (219)
T 3jwg_A           84 KRISLFQSSLV-YRDK-RFSGYDAATVIEVI--------EHLDENRLQAFEKVLFEFTRPQTVIVS  139 (219)
T ss_dssp             TTEEEEECCSS-SCCG-GGTTCSEEEEESCG--------GGCCHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred             cceEEEeCccc-cccc-ccCCCCEEEEHHHH--------HhCCHHHHHHHHHHHHHhhCCCEEEEE
Confidence            38999999972 2222 34689999964221        1222   25899999999999998875

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=96.54  E-value=0.0041  Score=46.75  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=39.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++++.+|+.+. ..  +++||+|++...-.    ..+..--..++++.+++.|+|||++++..
T Consensus       170 ~~v~~~~~d~~~~-~~--~~~fD~v~~~~~~~----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          170 GQITLHRQDAWKL-DT--REGYDLLTSNGLNI----YEPDDARVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             GGEEEEECCGGGC-CC--CSCEEEEECCSSGG----GCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CceEEEECchhcC-Cc--cCCeEEEEECChhh----hcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            4589999998874 22  37899999743211    11112222458999999999999999753

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=96.54  E-value=0.0035  Score=44.24  Aligned_cols=105  Identities=14%  Similarity=-0.023  Sum_probs=61.3

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCC----------C
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWY----------S   77 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~----------~   77 (132)
                      +++++.+|....-   .+++||+|+....-.    ..+ .---..+++.+++.|+|||.+++.......          .
T Consensus        86 ~~~~~~~d~~~~~---~~~~fD~v~~~~~l~----~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  157 (211)
T 3e23_A           86 GRPVRTMLFHQLD---AIDAYDAVWAHACLL----HVP-RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYN  157 (211)
T ss_dssp             TSCCEECCGGGCC---CCSCEEEEEECSCGG----GSC-HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEEC
T ss_pred             CCceEEeeeccCC---CCCcEEEEEecCchh----hcC-HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhcc
Confidence            4566777766532   457899999753211    111 001257899999999999999875311110          0


Q ss_pred             hHHHHHHHHHHHhh--CCCceEeEEeccCcCC--CceeEEEeecCCC
Q psy4593          78 LDCVGNTLQHCASV--FPRVAYGATCVPTYPS--GQIGFVLGSQLLK  120 (132)
Q Consensus        78 ~~~~~~~~~~l~~v--F~~v~~~~~~~p~~~~--~~~~f~~as~~~~  120 (132)
                      ......+.+.+++.  |..+.........+.+  ..|-+++..+.+.
T Consensus       158 ~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~  204 (211)
T 3e23_A          158 YPSEEWLRARYAEAGTWASVAVESSEGKGFDQELAQFLHVSVRKPEL  204 (211)
T ss_dssp             CCCHHHHHHHHHHHCCCSEEEEEEEEEECTTSCEEEEEEEEEECCCC
T ss_pred             CCCHHHHHHHHHhCCCcEEEEEEeccCCCCCCCCceEEEEEEecCcc
Confidence            01234555666654  8877776555555544  2366666655543

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=96.53  E-value=0.0025  Score=46.34  Aligned_cols=52  Identities=8%  Similarity=-0.139  Sum_probs=37.5

Q ss_pred             CCCcEEEEccHHH------------------Hhc---CC-CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCC
Q psy4593           6 GYPVLSARQDCTD------------------FMS---GP-VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRP   63 (132)
Q Consensus         6 d~rv~v~~~Dg~~------------------~l~---~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p   63 (132)
                      ..|++++.+|+.+                  |..   +. ....||+|++|.--.            .+++..+.+.|+|
T Consensus        79 ~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~------------~~~~~~~l~~l~~  146 (202)
T 3cvo_A           79 GTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR------------VGCALATAFSITR  146 (202)
T ss_dssp             TCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH------------HHHHHHHHHHCSS
T ss_pred             CCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc------------hhHHHHHHHhcCC
Confidence            4589999999654                  331   11 236899999997311            3667778899999


Q ss_pred             CcEEEE
Q psy4593          64 GGIVCS   69 (132)
Q Consensus        64 ~Gil~~   69 (132)
                      ||+++.
T Consensus       147 GG~Iv~  152 (202)
T 3cvo_A          147 PVTLLF  152 (202)
T ss_dssp             CEEEEE
T ss_pred             CeEEEE
Confidence            999987

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=96.51  E-value=0.0011  Score=45.64  Aligned_cols=57  Identities=14%  Similarity=0.070  Sum_probs=41.5

Q ss_pred             CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHH--HHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELM--SRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~--~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|+.+++...  ..++||+|+.|..     ..   .-...++++.+  ++.|+|||++++..
T Consensus        94 ~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~-----~~---~~~~~~~~~~l~~~~~L~~gG~l~~~~  154 (187)
T 2fhp_A           94 EKFEVRKMDANRALEQFYEEKLQFDLVLLDPP-----YA---KQEIVSQLEKMLERQLLTNEAVIVCET  154 (187)
T ss_dssp             GGEEEEESCHHHHHHHHHHTTCCEEEEEECCC-----GG---GCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             cceEEEECcHHHHHHHHHhcCCCCCEEEECCC-----CC---chhHHHHHHHHHHhcccCCCCEEEEEe
Confidence            57999999999986531  2468999999853     11   11235677777  88899999999864

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=96.48  E-value=0.0074  Score=40.99  Aligned_cols=53  Identities=11%  Similarity=0.023  Sum_probs=38.7

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .++++++.+|    +.- .+++||+|+....-.+  .  .   -...+++.+++.|+|||.+++.
T Consensus        59 ~~~v~~~~~d----~~~-~~~~~D~v~~~~~l~~--~--~---~~~~~l~~~~~~L~pgG~l~~~  111 (170)
T 3i9f_A           59 FDSVITLSDP----KEI-PDNSVDFILFANSFHD--M--D---DKQHVISEVKRILKDDGRVIII  111 (170)
T ss_dssp             CTTSEEESSG----GGS-CTTCEEEEEEESCSTT--C--S---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCcEEEeCC----CCC-CCCceEEEEEccchhc--c--c---CHHHHHHHHHHhcCCCCEEEEE
Confidence            3688899999    333 5678999997543221  1  1   1368999999999999999875

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.45  E-value=0.0071  Score=46.82  Aligned_cols=97  Identities=16%  Similarity=0.245  Sum_probs=60.7

Q ss_pred             EEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCC-CCc--cc-ccHHHHHHHHHhcCCCcEEEEec-CCCCCChHHHHHH
Q psy4593          10 LSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVC-PAE--SL-FQASYFELMSRALRPGGIVCSQA-GTLWYSLDCVGNT   84 (132)
Q Consensus        10 ~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~-~~~--~L-~t~eF~~~~~~~L~p~Gil~~~~-~~~~~~~~~~~~~   84 (132)
                      ..+.+|..+. .  ...+||+||+|......+.. .+.  .. +-+.-++.+++.|+|||-+++-. ...+      ...
T Consensus       155 ~~IqGD~~~~-~--~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg------~~~  225 (344)
T 3r24_A          155 STLIGDCATV-H--TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW------NAD  225 (344)
T ss_dssp             EEEESCGGGE-E--ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC------CHH
T ss_pred             eEEEcccccc-c--cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC------HHH
Confidence            3488896552 2  24789999999986643221 111  22 35566777999999999999852 2222      133


Q ss_pred             HHHHHhhCCCceEeEEeccCcCCCceeEEEeec
Q psy4593          85 LQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ  117 (132)
Q Consensus        85 ~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~  117 (132)
                      +..+++.|..|..+.  ..+.....=.|++|..
T Consensus       226 L~~lrk~F~~VK~fK--~ASRa~SsEvYLVG~g  256 (344)
T 3r24_A          226 LYKLMGHFSWWTAFV--TNVNASSSEAFLIGAN  256 (344)
T ss_dssp             HHHHHTTEEEEEEEE--EGGGTTSSCEEEEEEE
T ss_pred             HHHHHhhCCeEEEEC--CCCCCCCeeEEEEeee
Confidence            556777999998874  2334333445777644

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=96.42  E-value=0.0018  Score=48.07  Aligned_cols=57  Identities=19%  Similarity=0.195  Sum_probs=42.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|+.+.... .+++||+|++...-.    ..+.   ..++++.+++.|+|||++++..
T Consensus       117 ~~v~~~~~d~~~~~~~-~~~~fD~v~~~~~l~----~~~~---~~~~l~~~~~~LkpgG~l~~~~  173 (285)
T 4htf_A          117 DNMQFIHCAAQDVASH-LETPVDLILFHAVLE----WVAD---PRSVLQTLWSVLRPGGVLSLMF  173 (285)
T ss_dssp             GGEEEEESCGGGTGGG-CSSCEEEEEEESCGG----GCSC---HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cceEEEEcCHHHhhhh-cCCCceEEEECchhh----cccC---HHHHHHHHHHHcCCCeEEEEEE
Confidence            6789999999886533 468999999754311    1111   2689999999999999998753

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.40  E-value=0.0018  Score=45.09  Aligned_cols=84  Identities=13%  Similarity=0.054  Sum_probs=51.5

Q ss_pred             CCcEEE-EccHHHH-----hcC-CCCCeecEEEEcCCCCCCCCCCCccccc--------HHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSA-RQDCTDF-----MSG-PVKNMCGLVVSGAAGPGRVVCPAESLFQ--------ASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~-~~Dg~~~-----l~~-~~~~~yDvIi~D~~dp~~~~~~~~~L~t--------~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++.+ .+|....     +.+ ..+++||+|++|..-.   .... ....        ..+++.+.+.|+|||.+++..
T Consensus        70 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~---~~~~-~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           70 EGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPN---ATGF-RDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             TTCEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCC---CCSC-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCC---CCCC-cccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            467777 7774432     111 1235899999986322   1111 1111        378999999999999999863


Q ss_pred             CCCCCChHHHHHHHHHHHhhCCCceEe
Q psy4593          72 GTLWYSLDCVGNTLQHCASVFPRVAYG   98 (132)
Q Consensus        72 ~~~~~~~~~~~~~~~~l~~vF~~v~~~   98 (132)
                      ...    .....+.+.+++.|..+...
T Consensus       146 ~~~----~~~~~~~~~l~~~f~~v~~~  168 (196)
T 2nyu_A          146 WAG----SQSRRLQRRLTEEFQNVRII  168 (196)
T ss_dssp             CCS----GGGHHHHHHHHHHEEEEEEE
T ss_pred             cCC----ccHHHHHHHHHHHhcceEEE
Confidence            221    22456667777888877664

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.39  E-value=0.002  Score=45.37  Aligned_cols=56  Identities=20%  Similarity=0.152  Sum_probs=40.9

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.++  . .+++||+|+....-.    ..+.. --..+++.+++.|+|||.+++.
T Consensus        90 ~~~~~~~~d~~~~--~-~~~~~D~v~~~~~l~----~~~~~-~~~~~l~~~~~~L~pgG~l~~~  145 (218)
T 3ou2_A           90 DNVEFRQQDLFDW--T-PDRQWDAVFFAHWLA----HVPDD-RFEAFWESVRSAVAPGGVVEFV  145 (218)
T ss_dssp             TTEEEEECCTTSC--C-CSSCEEEEEEESCGG----GSCHH-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCeEEEecccccC--C-CCCceeEEEEechhh----cCCHH-HHHHHHHHHHHHcCCCeEEEEE
Confidence            6799999998776  2 468999999754211    11110 1268899999999999999875

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.36  E-value=0.0027  Score=45.82  Aligned_cols=100  Identities=9%  Similarity=0.025  Sum_probs=58.6

Q ss_pred             CCcEEEEccHHHHhc-CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe----cCCCCCCh-HH
Q psy4593           7 YPVLSARQDCTDFMS-GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ----AGTLWYSL-DC   80 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~-~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~----~~~~~~~~-~~   80 (132)
                      ++++.+.+|+.+... .....+||+|+.|..++.         ....+++.+++.|+|||.+++-    ........ ..
T Consensus       122 ~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~---------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~  192 (230)
T 1fbn_A          122 ENIIPILGDANKPQEYANIVEKVDVIYEDVAQPN---------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEI  192 (230)
T ss_dssp             TTEEEEECCTTCGGGGTTTSCCEEEEEECCCSTT---------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHH
T ss_pred             CCeEEEECCCCCcccccccCccEEEEEEecCChh---------HHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHh
Confidence            788999999876221 111268999998875551         2467899999999999999872    11111111 22


Q ss_pred             HHHHHHHHHhh-CCCceEeEEeccCcCCCceeEEEeecC
Q psy4593          81 VGNTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQL  118 (132)
Q Consensus        81 ~~~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~  118 (132)
                      +...++.|++. |..+...  .+..+.. ...++++.+.
T Consensus       193 ~~~~l~~l~~~Gf~~~~~~--~~~~~~~-~~~~v~~~k~  228 (230)
T 1fbn_A          193 FKEQKEILEAGGFKIVDEV--DIEPFEK-DHVMFVGIWE  228 (230)
T ss_dssp             HHHHHHHHHHHTEEEEEEE--ECTTTST-TEEEEEEEEC
T ss_pred             hHHHHHHHHHCCCEEEEEE--ccCCCcc-ceEEEEEEeC
Confidence            33334456654 6544432  2333422 3556666653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=96.35  E-value=0.0049  Score=42.30  Aligned_cols=81  Identities=15%  Similarity=0.022  Sum_probs=49.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCC-CCChHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL-WYSLDCVGNT   84 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~-~~~~~~~~~~   84 (132)
                      ++++++.+|..+. .- .+++||+|+... .-.   .....  -...+++.+++.|+|||.+++..... ...   ...+
T Consensus        89 ~~~~~~~~d~~~~-~~-~~~~~D~i~~~~~~~~---~~~~~--~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~---~~~~  158 (195)
T 3cgg_A           89 PEARWVVGDLSVD-QI-SETDFDLIVSAGNVMG---FLAED--GREPALANIHRALGADGRAVIGFGAGRGWV---FGDF  158 (195)
T ss_dssp             TTSEEEECCTTTS-CC-CCCCEEEEEECCCCGG---GSCHH--HHHHHHHHHHHHEEEEEEEEEEEETTSSCC---HHHH
T ss_pred             CCCcEEEcccccC-CC-CCCceeEEEECCcHHh---hcChH--HHHHHHHHHHHHhCCCCEEEEEeCCCCCcC---HHHH
Confidence            4588889997763 22 357899999862 111   00001  12789999999999999998753221 122   3445


Q ss_pred             HHHHHhh-CCCceE
Q psy4593          85 LQHCASV-FPRVAY   97 (132)
Q Consensus        85 ~~~l~~v-F~~v~~   97 (132)
                      .+.+++. |.-+..
T Consensus       159 ~~~l~~~Gf~~~~~  172 (195)
T 3cgg_A          159 LEVAERVGLELENA  172 (195)
T ss_dssp             HHHHHHHTEEEEEE
T ss_pred             HHHHHHcCCEEeee
Confidence            5555554 654444

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=96.33  E-value=0.0042  Score=43.51  Aligned_cols=102  Identities=10%  Similarity=-0.079  Sum_probs=59.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCC-----C----
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWY-----S----   77 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~-----~----   77 (132)
                      ++++++.+|+.+.- - .+++||+|+....-.+  . +.  ---..+++.+++.|+|||.+++.......     .    
T Consensus        84 ~~~~~~~~d~~~~~-~-~~~~fD~v~~~~~l~~--~-~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~  156 (203)
T 3h2b_A           84 PSVTFHHGTITDLS-D-SPKRWAGLLAWYSLIH--M-GP--GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVAT  156 (203)
T ss_dssp             TTSEEECCCGGGGG-G-SCCCEEEEEEESSSTT--C-CT--TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSC
T ss_pred             CCCeEEeCcccccc-c-CCCCeEEEEehhhHhc--C-CH--HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhh
Confidence            57899999987742 2 4579999998532221  1 11  12378999999999999999875311100     0    


Q ss_pred             --hHHHHHHHHHHHhh-CCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          78 --LDCVGNTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        78 --~~~~~~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                        ......+.+.+++. |..+....  .+..   .-+++...+..+
T Consensus       157 ~~~~~~~~~~~~l~~~Gf~~~~~~~--~~~~---p~~~l~~~~~~~  197 (203)
T 3h2b_A          157 AYRWPLPELAQALETAGFQVTSSHW--DPRF---PHAYLTAEASLE  197 (203)
T ss_dssp             EEECCHHHHHHHHHHTTEEEEEEEE--CTTS---SEEEEEEEECC-
T ss_pred             hccCCHHHHHHHHHHCCCcEEEEEe--cCCC---cchhhhhhhhhh
Confidence              01134555666655 66555432  2223   345555555443

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=96.33  E-value=0.0036  Score=46.75  Aligned_cols=73  Identities=14%  Similarity=0.091  Sum_probs=51.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCC-CChHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLW-YSLDCVGNTL   85 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~-~~~~~~~~~~   85 (132)
                      ++++++.+|+.++ ..  .++||+|++|...           -..++++.+.+.|+|||++.+.+.... ...+.....+
T Consensus       169 ~~~~~~~~d~~~~-~~--~~~~D~Vi~d~p~-----------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~  234 (272)
T 3a27_A          169 NNVIPILADNRDV-EL--KDVADRVIMGYVH-----------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERL  234 (272)
T ss_dssp             SSEEEEESCGGGC-CC--TTCEEEEEECCCS-----------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHH
T ss_pred             CCEEEEECChHHc-Cc--cCCceEEEECCcc-----------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHH
Confidence            4688999999987 43  5689999999632           235689999999999999987542211 1123456667


Q ss_pred             HHHHhhCC
Q psy4593          86 QHCASVFP   93 (132)
Q Consensus        86 ~~l~~vF~   93 (132)
                      +.+.+.+.
T Consensus       235 ~~~~~~~~  242 (272)
T 3a27_A          235 KFYAEKNG  242 (272)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhC
Confidence            77776543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=96.28  E-value=0.0027  Score=44.81  Aligned_cols=52  Identities=19%  Similarity=0.190  Sum_probs=38.9

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT   73 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~   73 (132)
                      ++++++.+|+.+....  .++||+|+++..-++    .+         +.+++.|+|||.+++....
T Consensus       125 ~~v~~~~~d~~~~~~~--~~~~D~i~~~~~~~~----~~---------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          125 HNVSTRHGDGWQGWQA--RAPFDAIIVTAAPPE----IP---------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             CSEEEEESCGGGCCGG--GCCEEEEEESSBCSS----CC---------THHHHTEEEEEEEEEEECS
T ss_pred             CceEEEECCcccCCcc--CCCccEEEEccchhh----hh---------HHHHHhcccCcEEEEEEcC
Confidence            4799999999885543  468999999865431    11         2578999999999987544

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=96.21  E-value=0.0041  Score=45.93  Aligned_cols=98  Identities=12%  Similarity=0.040  Sum_probs=55.4

Q ss_pred             CCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe--cCC--CCC-ChHH
Q psy4593           7 YPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ--AGT--LWY-SLDC   80 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~--~~~--~~~-~~~~   80 (132)
                      +++..+.+|+..--.. ...++||+|++|...|.         -..-+.+.+++.|+|||.+++-  ..+  ... ..+.
T Consensus       125 ~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~~~---------~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~  195 (232)
T 3id6_C          125 PNIFPLLADARFPQSYKSVVENVDVLYVDIAQPD---------QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEI  195 (232)
T ss_dssp             TTEEEEECCTTCGGGTTTTCCCEEEEEECCCCTT---------HHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSS
T ss_pred             CCeEEEEcccccchhhhccccceEEEEecCCChh---------HHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHH
Confidence            6789999998753211 12468999999975441         1233456677799999999864  222  111 1223


Q ss_pred             HHHHHHHHHhh-CCCceEeEEeccCcCCCceeEEEee
Q psy4593          81 VGNTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGS  116 (132)
Q Consensus        81 ~~~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as  116 (132)
                      +....+.|++. |.-+.  ...+..|..+ -.++++.
T Consensus       196 ~~~~~~~L~~~gf~~~~--~~~l~p~~~~-h~~v~~~  229 (232)
T 3id6_C          196 YKTEVEKLENSNFETIQ--IINLDPYDKD-HAIVLSK  229 (232)
T ss_dssp             TTHHHHHHHHTTEEEEE--EEECTTTCSS-CEEEEEE
T ss_pred             HHHHHHHHHHCCCEEEE--EeccCCCcCc-eEEEEEE
Confidence            45667777764 54333  3344445332 3334443

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.21  E-value=0.008  Score=45.74  Aligned_cols=90  Identities=10%  Similarity=0.069  Sum_probs=56.9

Q ss_pred             CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCC-cEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEec
Q psy4593          24 VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPG-GIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCV  102 (132)
Q Consensus        24 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~  102 (132)
                      ..++||+|++|.. |..+..-..+.-+.+-++.+.+.|+|| |.+++-.-.|+  .+.+..+++.|++.|..|....-  
T Consensus       137 ~~~~~DlVlsD~a-pnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~py--g~~~~~l~~~lk~~F~~V~~~KP--  211 (277)
T 3evf_A          137 EPVKCDTLLCDIG-ESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPY--MPDVLEKLELLQRRFGGTVIRNP--  211 (277)
T ss_dssp             CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTT--SHHHHHHHHHHHHHHCCEEECCT--
T ss_pred             CCCCccEEEecCc-cCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCC--CccHHHHHHHHHHhcCCEEEEeC--
Confidence            4578999999974 311110011222223367889999999 99998532221  34578899999999999987542  


Q ss_pred             cCcCCCceeEEEeecC
Q psy4593         103 PTYPSGQIGFVLGSQL  118 (132)
Q Consensus       103 p~~~~~~~~f~~as~~  118 (132)
                      .+..+..=.|++|-..
T Consensus       212 aSR~~S~E~Y~V~~~r  227 (277)
T 3evf_A          212 LSRNSTHEMYYVSGAR  227 (277)
T ss_dssp             TSCTTCCCEEEESSCC
T ss_pred             CCCCCCCceEEEEecC
Confidence            4444334456666544

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=96.20  E-value=0.0016  Score=44.07  Aligned_cols=55  Identities=11%  Similarity=0.089  Sum_probs=40.4

Q ss_pred             CcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHH--HhcCCCcEEEEec
Q psy4593           8 PVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMS--RALRPGGIVCSQA   71 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~--~~L~p~Gil~~~~   71 (132)
                      +++++.+|+.+++...  ..++||+|+.|..     ..    -...++++.+.  +.|+|||++++..
T Consensus        89 ~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~-----~~----~~~~~~~~~~~~~~~L~~gG~~~~~~  147 (171)
T 1ws6_A           89 GARVVALPVEVFLPEAKAQGERFTVAFMAPP-----YA----MDLAALFGELLASGLVEAGGLYVLQH  147 (171)
T ss_dssp             CCEEECSCHHHHHHHHHHTTCCEEEEEECCC-----TT----SCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred             ceEEEeccHHHHHHhhhccCCceEEEEECCC-----Cc----hhHHHHHHHHHhhcccCCCcEEEEEe
Confidence            7899999999976531  2348999999852     11    12346777777  9999999999864

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=96.17  E-value=0.0043  Score=44.94  Aligned_cols=55  Identities=15%  Similarity=0.057  Sum_probs=40.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++++.+|+.+. .- .+++||+|+....-.+  .      --.++++.+++.|+|||.+++..
T Consensus        96 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~~--~------~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A           96 DRVKGITGSMDNL-PF-QNEELDLIWSEGAIYN--I------GFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             TTEEEEECCTTSC-SS-CTTCEEEEEEESCSCC--C------CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CceEEEECChhhC-CC-CCCCEEEEEecChHhh--c------CHHHHHHHHHHHcCCCcEEEEEE
Confidence            4699999998543 22 4579999998643221  1      24789999999999999998753

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.17  E-value=0.0021  Score=45.24  Aligned_cols=92  Identities=13%  Similarity=-0.018  Sum_probs=57.1

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH   87 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~   87 (132)
                      +++++.+|+.++    .+++||+|+.+..-.        .  -.++++.+++.|+|||.+++.....    .....+.+.
T Consensus       110 ~v~~~~~d~~~~----~~~~fD~i~~~~~~~--------~--~~~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~~  171 (205)
T 3grz_A          110 DIALQKTSLLAD----VDGKFDLIVANILAE--------I--LLDLIPQLDSHLNEDGQVIFSGIDY----LQLPKIEQA  171 (205)
T ss_dssp             CCEEEESSTTTT----CCSCEEEEEEESCHH--------H--HHHHGGGSGGGEEEEEEEEEEEEEG----GGHHHHHHH
T ss_pred             ceEEEecccccc----CCCCceEEEECCcHH--------H--HHHHHHHHHHhcCCCCEEEEEecCc----ccHHHHHHH
Confidence            389999998664    346899999985321        1  2788999999999999999742111    124455566


Q ss_pred             HHhh-CCCceEeEEeccCcCCCceeEEEeecCCCcccc
Q psy4593          88 CASV-FPRVAYGATCVPTYPSGQIGFVLGSQLLKQHAN  124 (132)
Q Consensus        88 l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~~~~~~~  124 (132)
                      +++. |..+....       .+.|-.++..+.++.+..
T Consensus       172 ~~~~Gf~~~~~~~-------~~~w~~~~~~~~~~~~~~  202 (205)
T 3grz_A          172 LAENSFQIDLKMR-------AGRWIGLAISRKHEGHHH  202 (205)
T ss_dssp             HHHTTEEEEEEEE-------ETTEEEEEEEECC-----
T ss_pred             HHHcCCceEEeec-------cCCEEEEEEecccccccc
Confidence            6654 65544322       245766776666654443

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=96.15  E-value=0.0033  Score=46.16  Aligned_cols=55  Identities=15%  Similarity=0.042  Sum_probs=41.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|+.+. .- .+++||+|++...-.        ++-..++++.+++.|+|||.+++..
T Consensus        96 ~~v~~~~~d~~~~-~~-~~~~fD~i~~~~~~~--------~~~~~~~l~~~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A           96 NRVTGIVGSMDDL-PF-RNEELDLIWSEGAIY--------NIGFERGLNEWRKYLKKGGYLAVSE  150 (267)
T ss_dssp             TTEEEEECCTTSC-CC-CTTCEEEEEESSCGG--------GTCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cCcEEEEcChhhC-CC-CCCCEEEEEEcCCce--------ecCHHHHHHHHHHHcCCCCEEEEEE
Confidence            6799999998653 22 357899999764322        1124789999999999999998753

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=96.12  E-value=0.00091  Score=48.21  Aligned_cols=50  Identities=16%  Similarity=0.083  Sum_probs=38.2

Q ss_pred             CCCcEEEEccHHHHhcCCC-CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           6 GYPVLSARQDCTDFMSGPV-KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~-~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      .++++++.+|+.+.+.- . +++||+|+.. .++            ..+++.+++.|+|||.++.
T Consensus        90 ~~~~~~~~~d~~~~~~~-~~~~~fD~v~~~-~~~------------~~~l~~~~~~LkpgG~l~~  140 (226)
T 3m33_A           90 APHADVYEWNGKGELPA-GLGAPFGLIVSR-RGP------------TSVILRLPELAAPDAHFLY  140 (226)
T ss_dssp             CTTSEEEECCSCSSCCT-TCCCCEEEEEEE-SCC------------SGGGGGHHHHEEEEEEEEE
T ss_pred             CCCceEEEcchhhccCC-cCCCCEEEEEeC-CCH------------HHHHHHHHHHcCCCcEEEE
Confidence            35789999998655543 4 6789999986 233            3457899999999999984

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=96.10  E-value=0.017  Score=45.09  Aligned_cols=81  Identities=15%  Similarity=0.107  Sum_probs=49.9

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC--------Ccc----------------cccHHHHHHHHHhcC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP--------AES----------------LFQASYFELMSRALR   62 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~--------~~~----------------L~t~eF~~~~~~~L~   62 (132)
                      ++++++.+|...+.   ..++||+|+.+.+=-.  ...        ...                -.-..|++.+.+.|+
T Consensus        81 ~~~~~~~~D~~~~~---~~~~fD~Ii~NPPy~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk  155 (421)
T 2ih2_A           81 PWAEGILADFLLWE---PGEAFDLILGNPPYGI--VGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLK  155 (421)
T ss_dssp             TTEEEEESCGGGCC---CSSCEEEEEECCCCCC--BSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEE
T ss_pred             CCCcEEeCChhhcC---ccCCCCEEEECcCccC--cccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhC
Confidence            47899999988763   2468999999853110  111        000                012378999999999


Q ss_pred             CCcEEEEecCCCCCChHHHHHHHHHHHhhC
Q psy4593          63 PGGIVCSQAGTLWYSLDCVGNTLQHCASVF   92 (132)
Q Consensus        63 p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF   92 (132)
                      |||.+++-..+.+........+.+.+.+..
T Consensus       156 ~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~  185 (421)
T 2ih2_A          156 PGGVLVFVVPATWLVLEDFALLREFLAREG  185 (421)
T ss_dssp             EEEEEEEEEEGGGGTCGGGHHHHHHHHHHS
T ss_pred             CCCEEEEEEChHHhcCccHHHHHHHHHhcC
Confidence            999988754333332223345555555543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=96.10  E-value=0.0043  Score=48.00  Aligned_cols=58  Identities=12%  Similarity=0.160  Sum_probs=41.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+. .- ..++||+|+.+....    .....-.-..+++.+++.|+|||+++..
T Consensus       115 ~~v~~~~~d~~~~-~~-~~~~fD~Iis~~~~~----~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          115 HVVTIIKGKVEEV-EL-PVEKVDIIISEWMGY----CLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             TTEEEEESCTTTC-CC-SSSCEEEEEECCCBB----TBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             CcEEEEECcHHHc-cC-CCCceEEEEEccccc----cccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            5699999998775 22 457999999986422    1112223467899999999999999743

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=96.05  E-value=0.0071  Score=44.81  Aligned_cols=56  Identities=7%  Similarity=-0.119  Sum_probs=39.2

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVC   68 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~   68 (132)
                      .++++++++|+.+.-.. ..++||+|+.-. ...     .+.. -...+++.+++.|+|||.++
T Consensus       132 ~~~i~~~~~D~~~l~~~-~~~~FD~V~~~~~l~~-----l~~~-~~~~~l~~~~~~LkpGG~l~  188 (252)
T 2gb4_A          132 SGSISLYCCSIFDLPRA-NIGKFDRIWDRGALVA-----INPG-DHDRYADIILSLLRKEFQYL  188 (252)
T ss_dssp             TSSEEEEESCTTTGGGG-CCCCEEEEEESSSTTT-----SCGG-GHHHHHHHHHHTEEEEEEEE
T ss_pred             CCceEEEECccccCCcc-cCCCEEEEEEhhhhhh-----CCHH-HHHHHHHHHHHHcCCCeEEE
Confidence            47899999998875332 237899999532 221     1111 23578999999999999985

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.01  E-value=0.0044  Score=44.50  Aligned_cols=53  Identities=19%  Similarity=0.172  Sum_probs=39.0

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT   73 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~   73 (132)
                      .++++++.+|+.+.+..  ...||+|+++..-+        .+     .+.+.+.|+|||.+++..+.
T Consensus       144 ~~~v~~~~~d~~~~~~~--~~~fD~I~~~~~~~--------~~-----~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          144 SGQLLIVEGDGRKGYPP--NAPYNAIHVGAAAP--------DT-----PTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             HTSEEEEESCGGGCCGG--GCSEEEEEECSCBS--------SC-----CHHHHHTEEEEEEEEEEESC
T ss_pred             CCceEEEECCcccCCCc--CCCccEEEECCchH--------HH-----HHHHHHHhcCCCEEEEEEec
Confidence            46789999998873322  36899999886533        11     27889999999999987543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=96.00  E-value=0.0057  Score=47.83  Aligned_cols=57  Identities=16%  Similarity=0.131  Sum_probs=41.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++++.+|+.++..   +++||+|+++....    .....-.-..+++.+++.|+|||+++..
T Consensus       112 ~~v~~~~~d~~~~~~---~~~~D~Iv~~~~~~----~l~~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          112 HIVEVIEGSVEDISL---PEKVDVIISEWMGY----FLLRESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             TTEEEEESCGGGCCC---SSCEEEEEECCCBT----TBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             CeEEEEECchhhcCc---CCcceEEEEcChhh----cccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence            579999999877532   27899999976432    1111222467899999999999999753

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=95.97  E-value=0.0023  Score=46.32  Aligned_cols=94  Identities=12%  Similarity=0.009  Sum_probs=54.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCC--------C--
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLW--------Y--   76 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~--------~--   76 (132)
                      .+++++.+|+.+.. . .+++||+|+++..-.    ..+.. --.++++.+++.|+|||.+++......        .  
T Consensus       128 ~~~~~~~~d~~~~~-~-~~~~fD~v~~~~~l~----~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~  200 (241)
T 2ex4_A          128 RVRNYFCCGLQDFT-P-EPDSYDVIWIQWVIG----HLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSS  200 (241)
T ss_dssp             GEEEEEECCGGGCC-C-CSSCEEEEEEESCGG----GSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTE
T ss_pred             ceEEEEEcChhhcC-C-CCCCEEEEEEcchhh----hCCHH-HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCc
Confidence            35788899976543 2 356899999874321    11111 014799999999999999987321000        0  


Q ss_pred             ChHHHHHHHHHHHhh-CCCceEeEEeccCcCCCc
Q psy4593          77 SLDCVGNTLQHCASV-FPRVAYGATCVPTYPSGQ  109 (132)
Q Consensus        77 ~~~~~~~~~~~l~~v-F~~v~~~~~~~p~~~~~~  109 (132)
                      .......+.+.+++. |..+...  ..+.++.+.
T Consensus       201 ~~~~~~~~~~~l~~aGf~~~~~~--~~~~~~~~~  232 (241)
T 2ex4_A          201 VCRDLDVVRRIICSAGLSLLAEE--RQENLPDEI  232 (241)
T ss_dssp             EEEBHHHHHHHHHHTTCCEEEEE--ECCSCCTTS
T ss_pred             ccCCHHHHHHHHHHcCCeEEEee--ecCCCcchh
Confidence            000245566666665 7766643  234455433

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=95.96  E-value=0.0056  Score=43.40  Aligned_cols=57  Identities=4%  Similarity=-0.119  Sum_probs=37.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|.. .+.. ..++||+|++...-.    ..+ .---.++++.+++.|+|||+++..
T Consensus        84 ~~v~~~~~d~~-~~~~-~~~~fD~v~~~~~l~----~~~-~~~~~~~l~~~~~~LkpgG~li~~  140 (217)
T 3jwh_A           84 ERLQLIQGALT-YQDK-RFHGYDAATVIEVIE----HLD-LSRLGAFERVLFEFAQPKIVIVTT  140 (217)
T ss_dssp             TTEEEEECCTT-SCCG-GGCSCSEEEEESCGG----GCC-HHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             cceEEEeCCcc-cccc-cCCCcCEEeeHHHHH----cCC-HHHHHHHHHHHHHHcCCCEEEEEc
Confidence            38999999963 2222 346899999643211    011 001258899999999999988763

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=95.94  E-value=0.096  Score=35.30  Aligned_cols=71  Identities=8%  Similarity=0.005  Sum_probs=51.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      ++++++.+|+.+.+..   ++||+|+.+..           -...++++.+++.  |||.+++...    .......+.+
T Consensus        83 ~~~~~~~~d~~~~~~~---~~~D~i~~~~~-----------~~~~~~l~~~~~~--~gG~l~~~~~----~~~~~~~~~~  142 (183)
T 2yxd_A           83 KNCQIIKGRAEDVLDK---LEFNKAFIGGT-----------KNIEKIIEILDKK--KINHIVANTI----VLENAAKIIN  142 (183)
T ss_dssp             CSEEEEESCHHHHGGG---CCCSEEEECSC-----------SCHHHHHHHHHHT--TCCEEEEEES----CHHHHHHHHH
T ss_pred             CcEEEEECCccccccC---CCCcEEEECCc-----------ccHHHHHHHHhhC--CCCEEEEEec----ccccHHHHHH
Confidence            5799999999986544   68999998754           1237889999988  9999998542    2344667777


Q ss_pred             HHHhhCCCceE
Q psy4593          87 HCASVFPRVAY   97 (132)
Q Consensus        87 ~l~~vF~~v~~   97 (132)
                      .+++..-.+..
T Consensus       143 ~l~~~g~~~~~  153 (183)
T 2yxd_A          143 EFESRGYNVDA  153 (183)
T ss_dssp             HHHHTTCEEEE
T ss_pred             HHHHcCCeEEE
Confidence            88776434443

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=95.93  E-value=0.0037  Score=50.16  Aligned_cols=58  Identities=17%  Similarity=0.264  Sum_probs=41.8

Q ss_pred             CCCCcEEEEccHHH--HhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           5 RGYPVLSARQDCTD--FMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~--~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ..++++++++|+.+  |+.+.  ..++||+|+.|...-   .  .   -...+|+.+++.|+|||++++.
T Consensus       262 ~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgsH~---~--~---d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          262 DELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGSHI---N--A---HVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             CBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSCCC---H--H---HHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cCCCcEEEEecccccchhhhhhcccCCccEEEECCccc---c--h---hHHHHHHHHHHhcCCCeEEEEE
Confidence            46899999999865  44110  136899999886421   1  1   1367899999999999999984

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=95.92  E-value=0.0039  Score=44.21  Aligned_cols=58  Identities=17%  Similarity=0.041  Sum_probs=40.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|..+. .- .+++||+|++...-..   ...  --..++++.+++.|+|||.+++..
T Consensus        85 ~~~~~~~~d~~~~-~~-~~~~~D~v~~~~~~~~---~~~--~~~~~~l~~~~~~L~~gG~l~~~~  142 (227)
T 1ve3_A           85 SNVEFIVGDARKL-SF-EDKTFDYVIFIDSIVH---FEP--LELNQVFKEVRRVLKPSGKFIMYF  142 (227)
T ss_dssp             CCCEEEECCTTSC-CS-CTTCEEEEEEESCGGG---CCH--HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCceEEECchhcC-CC-CCCcEEEEEEcCchHh---CCH--HHHHHHHHHHHHHcCCCcEEEEEe
Confidence            6889999997663 22 3578999997633000   000  112678999999999999998753

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=95.92  E-value=0.0043  Score=45.58  Aligned_cols=55  Identities=9%  Similarity=0.061  Sum_probs=40.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+.. - .+++||+|+....-.+  .  +.   ...+++.+++.|+|||++++.
T Consensus        87 ~~~~~~~~d~~~~~-~-~~~~fD~v~~~~~l~~--~--~~---~~~~l~~~~~~L~pgG~l~~~  141 (276)
T 3mgg_A           87 KNVKFLQANIFSLP-F-EDSSFDHIFVCFVLEH--L--QS---PEEALKSLKKVLKPGGTITVI  141 (276)
T ss_dssp             CSEEEEECCGGGCC-S-CTTCEEEEEEESCGGG--C--SC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCcEEEEcccccCC-C-CCCCeeEEEEechhhh--c--CC---HHHHHHHHHHHcCCCcEEEEE
Confidence            57899999988643 2 4579999997643221  1  11   258999999999999999874

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=95.90  E-value=0.0052  Score=43.41  Aligned_cols=87  Identities=14%  Similarity=0.145  Sum_probs=53.3

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC-----CCCChHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT-----LWYSLDCV   81 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~-----~~~~~~~~   81 (132)
                      ++++++.+|+.++.   .+++||+|++...-.    ..+..---..+++.+++.|+|||++++....     .|......
T Consensus        97 ~~~~~~~~d~~~~~---~~~~fD~v~~~~~l~----~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~  169 (216)
T 3ofk_A           97 SHISWAATDILQFS---TAELFDLIVVAEVLY----YLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGA  169 (216)
T ss_dssp             SSEEEEECCTTTCC---CSCCEEEEEEESCGG----GSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTTCSCCH
T ss_pred             CCeEEEEcchhhCC---CCCCccEEEEccHHH----hCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhhhhhhH
Confidence            58899999987754   357899999853211    1110001147799999999999999974211     12221123


Q ss_pred             HHHHHHHHhhCCCceEeEE
Q psy4593          82 GNTLQHCASVFPRVAYGAT  100 (132)
Q Consensus        82 ~~~~~~l~~vF~~v~~~~~  100 (132)
                      ..+.+.+.+.+..+.....
T Consensus       170 ~~~~~~~~~~~~~~e~~~~  188 (216)
T 3ofk_A          170 ETVITILTEALTEVERVQC  188 (216)
T ss_dssp             HHHHHHHHHHSEEEEEEEE
T ss_pred             HHHHHHHHhhccceEEEec
Confidence            4455666677776654333

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=95.89  E-value=0.017  Score=42.54  Aligned_cols=84  Identities=15%  Similarity=0.035  Sum_probs=56.1

Q ss_pred             cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHH
Q psy4593           9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHC   88 (132)
Q Consensus         9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l   88 (132)
                      ++++.+|+.+.+..   ++||+|+.+....        .  -.++++.+++.|+|||.+++....    ......+.+.+
T Consensus       169 v~~~~~d~~~~~~~---~~fD~Vv~n~~~~--------~--~~~~l~~~~~~LkpgG~lils~~~----~~~~~~v~~~l  231 (254)
T 2nxc_A          169 PRFLEGSLEAALPF---GPFDLLVANLYAE--------L--HAALAPRYREALVPGGRALLTGIL----KDRAPLVREAM  231 (254)
T ss_dssp             CEEEESCHHHHGGG---CCEEEEEEECCHH--------H--HHHHHHHHHHHEEEEEEEEEEEEE----GGGHHHHHHHH
T ss_pred             EEEEECChhhcCcC---CCCCEEEECCcHH--------H--HHHHHHHHHHHcCCCCEEEEEeec----cCCHHHHHHHH
Confidence            78899999887533   5799999874311        1  268899999999999999974211    11245666677


Q ss_pred             Hhh-CCCceEeEEeccCcCCCceeEEEee
Q psy4593          89 ASV-FPRVAYGATCVPTYPSGQIGFVLGS  116 (132)
Q Consensus        89 ~~v-F~~v~~~~~~~p~~~~~~~~f~~as  116 (132)
                      ++. |..+....       .+.|..+++.
T Consensus       232 ~~~Gf~~~~~~~-------~~~W~~l~~~  253 (254)
T 2nxc_A          232 AGAGFRPLEEAA-------EGEWVLLAYG  253 (254)
T ss_dssp             HHTTCEEEEEEE-------ETTEEEEEEE
T ss_pred             HHCCCEEEEEec-------cCCeEEEEEE
Confidence            765 76554422       2457666554

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=95.89  E-value=0.0053  Score=43.81  Aligned_cols=54  Identities=9%  Similarity=0.028  Sum_probs=39.7

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHH-HhcCCCcEEEEec
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMS-RALRPGGIVCSQA   71 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~-~~L~p~Gil~~~~   71 (132)
                      +++++.+|+.+.  . .+++||+|++-..-.    ..+.   ...+++.++ +.|+|||.+++..
T Consensus        87 ~v~~~~~d~~~~--~-~~~~fD~v~~~~~l~----~~~~---~~~~l~~~~~~~LkpgG~l~i~~  141 (250)
T 2p7i_A           87 GITYIHSRFEDA--Q-LPRRYDNIVLTHVLE----HIDD---PVALLKRINDDWLAEGGRLFLVC  141 (250)
T ss_dssp             CEEEEESCGGGC--C-CSSCEEEEEEESCGG----GCSS---HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CeEEEEccHHHc--C-cCCcccEEEEhhHHH----hhcC---HHHHHHHHHHHhcCCCCEEEEEc
Confidence            789999998876  2 457899999643211    1111   268999999 9999999998754

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.87  E-value=0.012  Score=44.28  Aligned_cols=88  Identities=11%  Similarity=0.006  Sum_probs=57.6

Q ss_pred             CCCcEEEEccHHHHhcCC----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec-CCCCCChHH
Q psy4593           6 GYPVLSARQDCTDFMSGP----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA-GTLWYSLDC   80 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~-~~~~~~~~~   80 (132)
                      +++++++.+|+.+-|.+.    ...++|+|.+|+--         .--+.+.|+.+..+|+|||+++.-- ..+..    
T Consensus       157 ~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~---------Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w----  223 (257)
T 3tos_A          157 TQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL---------YEPTKAVLEAIRPYLTKGSIVAFDELDNPKW----  223 (257)
T ss_dssp             CCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC---------HHHHHHHHHHHGGGEEEEEEEEESSTTCTTC----
T ss_pred             CCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc---------cchHHHHHHHHHHHhCCCcEEEEcCCCCCCC----
Confidence            589999999999987541    34579999999821         1125778999999999999999842 22111    


Q ss_pred             HHHHHHHHHhhCCCceEeEEeccCcCC
Q psy4593          81 VGNTLQHCASVFPRVAYGATCVPTYPS  107 (132)
Q Consensus        81 ~~~~~~~l~~vF~~v~~~~~~~p~~~~  107 (132)
                       ....+.+.+.+..-..-....|.++.
T Consensus       224 -~G~~~A~~ef~~~~~~~i~~~p~~~~  249 (257)
T 3tos_A          224 -PGENIAMRKVLGLDHAPLRLLPGRPA  249 (257)
T ss_dssp             -THHHHHHHHHTCTTSSCCEECTTCSC
T ss_pred             -hHHHHHHHHHHhhCCCeEEEccCCCC
Confidence             13344455555433332334677654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=95.86  E-value=0.0043  Score=44.92  Aligned_cols=53  Identities=23%  Similarity=0.331  Sum_probs=38.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+..   .+++||+|++- +...     .+.   -..+++.+++.|+|||.+++.
T Consensus        86 ~~v~~~~~d~~~~~---~~~~fD~V~~~~~~~~-----~~~---~~~~l~~~~r~LkpgG~l~~~  139 (256)
T 1nkv_A           86 ERVHFIHNDAAGYV---ANEKCDVAACVGATWI-----AGG---FAGAEELLAQSLKPGGIMLIG  139 (256)
T ss_dssp             TTEEEEESCCTTCC---CSSCEEEEEEESCGGG-----TSS---SHHHHHHHTTSEEEEEEEEEE
T ss_pred             cceEEEECChHhCC---cCCCCCEEEECCChHh-----cCC---HHHHHHHHHHHcCCCeEEEEe
Confidence            57999999987642   25789999972 2211     111   378899999999999999874

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=95.83  E-value=0.024  Score=39.92  Aligned_cols=97  Identities=12%  Similarity=0.060  Sum_probs=58.2

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCC-CCChHHHHHHHH
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTL-WYSLDCVGNTLQ   86 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~-~~~~~~~~~~~~   86 (132)
                      +++++.+|+.+ +.- .+++||+|++...-.        .--..++++.+++.|+|||.+++..... +..   ...+.+
T Consensus        98 ~~~~~~~d~~~-~~~-~~~~fD~v~~~~~l~--------~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~---~~~~~~  164 (215)
T 2zfu_A           98 DPRVTVCDMAQ-VPL-EDESVDVAVFCLSLM--------GTNIRDFLEEANRVLKPGGLLKVAEVSSRFED---VRTFLR  164 (215)
T ss_dssp             STTEEESCTTS-CSC-CTTCEEEEEEESCCC--------SSCHHHHHHHHHHHEEEEEEEEEEECGGGCSC---HHHHHH
T ss_pred             CceEEEecccc-CCC-CCCCEeEEEEehhcc--------ccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCC---HHHHHH
Confidence            56778888765 222 457899999743211        1123789999999999999998742111 112   344555


Q ss_pred             HHHhh-CCCceEeEEeccCcCCCceeEEEeecCCCccc
Q psy4593          87 HCASV-FPRVAYGATCVPTYPSGQIGFVLGSQLLKQHA  123 (132)
Q Consensus        87 ~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~~~~~~  123 (132)
                      .+++. |..+...      ..++.+.++++.+....+.
T Consensus       165 ~l~~~Gf~~~~~~------~~~~~~~~~~~~k~~~~~~  196 (215)
T 2zfu_A          165 AVTKLGFKIVSKD------LTNSHFFLFDFQKTGPPLV  196 (215)
T ss_dssp             HHHHTTEEEEEEE------CCSTTCEEEEEEECSSCSS
T ss_pred             HHHHCCCEEEEEe------cCCCeEEEEEEEecCcccc
Confidence            56554 6544321      1234567777777655444

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=95.81  E-value=0.007  Score=47.25  Aligned_cols=60  Identities=17%  Similarity=0.198  Sum_probs=43.4

Q ss_pred             CCCCCcEEEEccHHHHhc----CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           4 YRGYPVLSARQDCTDFMS----GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~----~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +..++++++.+|+.+...    ...+++||+|+....-.    ..+.   -..+++.+++.|+|||++++.
T Consensus       139 ~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~----~~~d---~~~~l~~~~r~LkpgG~l~i~  202 (383)
T 4fsd_A          139 PSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCN----LSTN---KLALFKEIHRVLRDGGELYFS  202 (383)
T ss_dssp             TTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGG----GCSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchh----cCCC---HHHHHHHHHHHcCCCCEEEEE
Confidence            445899999999877521    11457899999865322    1111   368999999999999999874

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=95.80  E-value=0.016  Score=44.59  Aligned_cols=59  Identities=15%  Similarity=0.090  Sum_probs=42.1

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC--ccc--ccHHHHHHHHHhcCCCcEEEEec
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA--ESL--FQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~--~~L--~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      +++++.+|+.++...  ...||+|++|.+=.   ....  ..+  .-.++++.+++.|+|||.+++-+
T Consensus       255 ~i~~~~~D~~~~~~~--~~~~D~Ii~npPyg---~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t  317 (354)
T 3tma_A          255 WIRFLRADARHLPRF--FPEVDRILANPPHG---LRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT  317 (354)
T ss_dssp             TCEEEECCGGGGGGT--CCCCSEEEECCCSC---C----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             ceEEEeCChhhCccc--cCCCCEEEECCCCc---CccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            789999999987544  35689999997422   1111  111  12678999999999999999864

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=95.80  E-value=0.0093  Score=42.13  Aligned_cols=56  Identities=16%  Similarity=0.007  Sum_probs=38.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.++ .. . ++||+|++...-.    ..+ ..-...+++.+++.|+|||.+++.
T Consensus        89 ~~~~~~~~d~~~~-~~-~-~~fD~v~~~~~l~----~~~-~~~~~~~l~~~~~~LkpgG~l~i~  144 (220)
T 3hnr_A           89 KEFSITEGDFLSF-EV-P-TSIDTIVSTYAFH----HLT-DDEKNVAIAKYSQLLNKGGKIVFA  144 (220)
T ss_dssp             TTCCEESCCSSSC-CC-C-SCCSEEEEESCGG----GSC-HHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             CceEEEeCChhhc-CC-C-CCeEEEEECcchh----cCC-hHHHHHHHHHHHHhcCCCCEEEEE
Confidence            4788888887764 22 2 7899999864211    111 111244899999999999999986

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=95.78  E-value=0.0073  Score=46.26  Aligned_cols=57  Identities=12%  Similarity=0.046  Sum_probs=40.3

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ++++++.+|+.+. .- ..++||+|+.+....    .....-.-..+++.+++.|+|||+++.
T Consensus        87 ~~i~~~~~d~~~~-~~-~~~~~D~Ivs~~~~~----~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1           87 DKITLLRGKLEDV-HL-PFPKVDIIISEWMGY----FLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             TTEEEEESCTTTS-CC-SSSCEEEEEECCCBT----TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             CCEEEEECchhhc-cC-CCCcccEEEEeCchh----hcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            5789999998764 22 347899999985432    111112235788999999999999973

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=95.75  E-value=0.0053  Score=44.48  Aligned_cols=56  Identities=14%  Similarity=0.020  Sum_probs=40.4

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .++++++.+|+.+. .- .+++||+|++...-.+    .+   -...+++.+++.|+|||.+++.
T Consensus        85 ~~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~~----~~---~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A           85 DRKVQVVQADARAI-PL-PDESVHGVIVVHLWHL----VP---DWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             CTTEEEEESCTTSC-CS-CTTCEEEEEEESCGGG----CT---THHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEEEcccccC-CC-CCCCeeEEEECCchhh----cC---CHHHHHHHHHHHCCCCcEEEEE
Confidence            47899999998653 22 4578999997533111    11   1368999999999999999875

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=95.74  E-value=0.0095  Score=44.09  Aligned_cols=90  Identities=10%  Similarity=-0.020  Sum_probs=59.0

Q ss_pred             CCCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe--cCCCC---CChH
Q psy4593           6 GYPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ--AGTLW---YSLD   79 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~--~~~~~---~~~~   79 (132)
                      .+++..+.+|+..--.. ...+.+|+|++|...|+         -...+++.+++.|+|||.+++-  ..+..   ....
T Consensus       125 ~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~~---------~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~  195 (233)
T 4df3_A          125 RRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPE---------QAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSE  195 (233)
T ss_dssp             CTTEEEEESCTTCGGGGTTTCCCEEEEEECCCCTT---------HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCH
T ss_pred             hcCeeEEEEeccCccccccccceEEEEEEeccCCh---------hHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHH
Confidence            46788888888764322 14578999999987662         1367899999999999998863  21110   1234


Q ss_pred             HHHHHHHHHHhh-CCCceEeEEeccCcC
Q psy4593          80 CVGNTLQHCASV-FPRVAYGATCVPTYP  106 (132)
Q Consensus        80 ~~~~~~~~l~~v-F~~v~~~~~~~p~~~  106 (132)
                      .+....+.|++. |.-+..  .....|+
T Consensus       196 ~~~~ev~~L~~~GF~l~e~--i~L~pf~  221 (233)
T 4df3_A          196 VYKREIKTLMDGGLEIKDV--VHLDPFD  221 (233)
T ss_dssp             HHHHHHHHHHHTTCCEEEE--EECTTTS
T ss_pred             HHHHHHHHHHHCCCEEEEE--EccCCCC
Confidence            567777888765 765543  2344454

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=95.68  E-value=0.016  Score=44.53  Aligned_cols=90  Identities=9%  Similarity=-0.059  Sum_probs=57.8

Q ss_pred             CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCC-cEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEec
Q psy4593          24 VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPG-GIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCV  102 (132)
Q Consensus        24 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~~  102 (132)
                      ....+|+|++|.. |..+.....+.-+.+-++.+.+.|+|| |.+++-.=.++  .+....+++.|++.|..|....-  
T Consensus       144 ~~~~~DlVlsD~A-PnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~y--G~~~~~ll~~lk~~F~~V~~~KP--  218 (300)
T 3eld_A          144 PTEPSDTLLCDIG-ESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPY--HPDVIEKLERLQLRFGGGIVRVP--  218 (300)
T ss_dssp             CCCCCSEEEECCC-CCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTT--SHHHHHHHHHHHHHHCCEEECCT--
T ss_pred             CCCCcCEEeecCc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccc--CccHHHHHHHHHHhCCcEEEEeC--
Confidence            4578999999975 311111112223334477889999999 99998631111  45678899999999999987532  


Q ss_pred             cCcCCCceeEEEeecC
Q psy4593         103 PTYPSGQIGFVLGSQL  118 (132)
Q Consensus       103 p~~~~~~~~f~~as~~  118 (132)
                      .+..+..=.|++|-..
T Consensus       219 aSR~~S~E~Y~V~~~r  234 (300)
T 3eld_A          219 FSRNSTHEMYYISGAR  234 (300)
T ss_dssp             TSCTTCCCEEEESSCC
T ss_pred             CCCCCChHHeeeccCC
Confidence            4444444456666544

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=95.68  E-value=0.0092  Score=43.62  Aligned_cols=54  Identities=22%  Similarity=0.232  Sum_probs=39.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+. .- .+++||+|+.- +...   .  +.   ...+++.+++.|+|||.+++.
T Consensus       111 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~~---~--~~---~~~~l~~~~~~L~pgG~l~i~  165 (273)
T 3bus_A          111 NRVTFSYADAMDL-PF-EDASFDAVWALESLHH---M--PD---RGRALREMARVLRPGGTVAIA  165 (273)
T ss_dssp             TTEEEEECCTTSC-CS-CTTCEEEEEEESCTTT---S--SC---HHHHHHHHHTTEEEEEEEEEE
T ss_pred             cceEEEECccccC-CC-CCCCccEEEEechhhh---C--CC---HHHHHHHHHHHcCCCeEEEEE
Confidence            5789999998662 22 45789999963 3322   1  11   278999999999999999875

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=95.67  E-value=0.0067  Score=44.20  Aligned_cols=57  Identities=11%  Similarity=-0.018  Sum_probs=36.8

Q ss_pred             EEEccHHHHhcCC---CCCeecEEEEcCCCCCCCCC-CC---cccccHHHHHHHHHhcCCCcEEEE
Q psy4593          11 SARQDCTDFMSGP---VKNMCGLVVSGAAGPGRVVC-PA---ESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus        11 v~~~Dg~~~l~~~---~~~~yDvIi~D~~dp~~~~~-~~---~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ++.+|..+.+...   ...+||+|+++..--.  .. ..   ..-.-..+++.+++.|+|||++++
T Consensus       149 ~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~--~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  212 (250)
T 1o9g_A          149 IRTADVFDPRALSAVLAGSAPDVVLTDLPYGE--RTHWEGQVPGQPVAGLLRSLASALPAHAVIAV  212 (250)
T ss_dssp             EEECCTTCGGGHHHHHTTCCCSEEEEECCGGG--SSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             eeecccccccccccccCCCCceEEEeCCCeec--cccccccccccHHHHHHHHHHHhcCCCcEEEE
Confidence            8889987755210   1247999999852100  01 00   012235889999999999999997

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=95.65  E-value=0.006  Score=43.09  Aligned_cols=97  Identities=6%  Similarity=-0.168  Sum_probs=58.3

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCC--------CCh
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLW--------YSL   78 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~--------~~~   78 (132)
                      ++++++.+|+.+.- - .+++||+|+....-.    ..+   -...+++.+++.|+|||.+++......        ...
T Consensus        88 ~~~~~~~~d~~~~~-~-~~~~fD~v~~~~~l~----~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~  158 (219)
T 3dh0_A           88 KNVEVLKSEENKIP-L-PDNTVDFIFMAFTFH----ELS---EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEV  158 (219)
T ss_dssp             TTEEEEECBTTBCS-S-CSSCEEEEEEESCGG----GCS---SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGS
T ss_pred             CcEEEEecccccCC-C-CCCCeeEEEeehhhh----hcC---CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcc
Confidence            47899999976532 2 457899999764321    111   137899999999999999987421110        000


Q ss_pred             HHHHHHHHHHHhh-CCCceEeEEeccCcCCCceeEEEeecC
Q psy4593          79 DCVGNTLQHCASV-FPRVAYGATCVPTYPSGQIGFVLGSQL  118 (132)
Q Consensus        79 ~~~~~~~~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as~~  118 (132)
                      -....+.+.+++. |..+.....      ++.+-++++.+.
T Consensus       159 ~~~~~~~~~l~~~Gf~~~~~~~~------~~~~~~~~~~k~  193 (219)
T 3dh0_A          159 YSEWEVGLILEDAGIRVGRVVEV------GKYCFGVYAMIV  193 (219)
T ss_dssp             CCHHHHHHHHHHTTCEEEEEEEE------TTTEEEEEEECC
T ss_pred             cCHHHHHHHHHHCCCEEEEEEee------CCceEEEEEEec
Confidence            0135566666665 776665322      124445666654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=95.65  E-value=0.0067  Score=46.10  Aligned_cols=52  Identities=13%  Similarity=-0.015  Sum_probs=38.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT   73 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~   73 (132)
                      ++++++.+|+.+.+..  .++||+|+++..-.+    .+         +.+++.|+|||++++....
T Consensus       126 ~~v~~~~~d~~~~~~~--~~~fD~Iv~~~~~~~----~~---------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          126 ENVIFVCGDGYYGVPE--FSPYDVIFVTVGVDE----VP---------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             CSEEEEESCGGGCCGG--GCCEEEEEECSBBSC----CC---------HHHHHHEEEEEEEEEEBCB
T ss_pred             CCeEEEECChhhcccc--CCCeEEEEEcCCHHH----HH---------HHHHHhcCCCcEEEEEECC
Confidence            4589999999875543  367999999864331    11         5788899999999987533

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=95.64  E-value=0.0062  Score=44.08  Aligned_cols=55  Identities=15%  Similarity=0.131  Sum_probs=40.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|+.++.   .+++||+|+....-.+  .  +   -...+++.+++.|+|||.+++..
T Consensus        78 ~~~~~~~~d~~~~~---~~~~fD~v~~~~~l~~--~--~---~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A           78 PNTNFGKADLATWK---PAQKADLLYANAVFQW--V--P---DHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             TTSEEEECCTTTCC---CSSCEEEEEEESCGGG--S--T---THHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCcEEEECChhhcC---ccCCcCEEEEeCchhh--C--C---CHHHHHHHHHHhcCCCeEEEEEe
Confidence            57899999987643   3578999998543221  1  1   13688999999999999999864

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=95.62  E-value=0.025  Score=38.87  Aligned_cols=85  Identities=8%  Similarity=-0.050  Sum_probs=51.7

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC----cccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHH
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA----ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCV   81 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~----~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~   81 (132)
                      .++++++.+|+.+.+.   +++||+|+.+..=-+  ....    ..--..++++.+.+.| |||.+++-.... ..   .
T Consensus        60 ~~~~~~~~~d~~~~~~---~~~fD~i~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-~~---~  129 (170)
T 3q87_B           60 HRGGNLVRADLLCSIN---QESVDVVVFNPPYVP--DTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-NR---P  129 (170)
T ss_dssp             CSSSCEEECSTTTTBC---GGGCSEEEECCCCBT--TCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-GC---H
T ss_pred             ccCCeEEECChhhhcc---cCCCCEEEECCCCcc--CCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC-CC---H
Confidence            3678999999877433   378999999743110  1111    1112357888988889 999998743121 12   3


Q ss_pred             HHHHHHHHhh-CCCceEeEE
Q psy4593          82 GNTLQHCASV-FPRVAYGAT  100 (132)
Q Consensus        82 ~~~~~~l~~v-F~~v~~~~~  100 (132)
                      ..+.+.+++. |..+.+...
T Consensus       130 ~~l~~~l~~~gf~~~~~~~~  149 (170)
T 3q87_B          130 KEVLARLEERGYGTRILKVR  149 (170)
T ss_dssp             HHHHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHHHHCCCcEEEEEee
Confidence            4555666654 766555443

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=95.61  E-value=0.0096  Score=43.11  Aligned_cols=56  Identities=16%  Similarity=0.038  Sum_probs=41.3

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .++++++.+|+.+. .- .+++||+|+....-.    ... .  -.++++.+++.|+|||.+++.
T Consensus        89 ~~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~----~~~-~--~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A           89 SPVVCYEQKAIEDI-AI-EPDAYNVVLSSLALH----YIA-S--FDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             CTTEEEEECCGGGC-CC-CTTCEEEEEEESCGG----GCS-C--HHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCeEEEEcchhhC-CC-CCCCeEEEEEchhhh----hhh-h--HHHHHHHHHHHcCCCcEEEEE
Confidence            57899999998653 22 468999999754211    111 1  378999999999999999985

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=95.61  E-value=0.0041  Score=45.91  Aligned_cols=61  Identities=18%  Similarity=0.102  Sum_probs=40.9

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++++.+|+.+.-.. .+++||+|++...-.   ......--..++++.+++.|+|||.+++..
T Consensus       114 ~~v~~~~~d~~~~~~~-~~~~fD~v~~~~~l~---~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          114 FKVFFRAQDSYGRHMD-LGKEFDVISSQFSFH---YAFSTSESLDIAQRNIARHLRPGGYFIMTV  174 (298)
T ss_dssp             SEEEEEESCTTTSCCC-CSSCEEEEEEESCGG---GGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccEEEEECCccccccC-CCCCcCEEEECchhh---hhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            4688999998764221 357899999864211   000001113679999999999999999864

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=95.60  E-value=0.0085  Score=46.22  Aligned_cols=56  Identities=13%  Similarity=0.038  Sum_probs=40.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVC   68 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~   68 (132)
                      ++++++.+|+.++ .- .+++||+|+.+....    .....-.-.++++.+++.|+|||+++
T Consensus       113 ~~i~~~~~d~~~~-~~-~~~~~D~Ivs~~~~~----~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          113 DTITLIKGKIEEV-HL-PVEKVDVIISEWMGY----FLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             TTEEEEESCTTTS-CC-SCSCEEEEEECCCBT----TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CcEEEEEeeHHHh-cC-CCCcEEEEEEcCchh----hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            6899999998764 22 347899999875311    11111223578999999999999997

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=95.56  E-value=0.0093  Score=44.30  Aligned_cols=54  Identities=15%  Similarity=0.188  Sum_probs=39.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+. .- .+++||+|+.- +...     .+.   -..+++.+++.|+|||.+++.
T Consensus       132 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~~-----~~~---~~~~l~~~~~~LkpgG~l~~~  186 (297)
T 2o57_A          132 DNITVKYGSFLEI-PC-EDNSYDFIWSQDAFLH-----SPD---KLKVFQECARVLKPRGVMAIT  186 (297)
T ss_dssp             TTEEEEECCTTSC-SS-CTTCEEEEEEESCGGG-----CSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceEEEEcCcccC-CC-CCCCEeEEEecchhhh-----cCC---HHHHHHHHHHHcCCCeEEEEE
Confidence            6789999997652 22 35789999974 3221     111   378999999999999999875

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=95.53  E-value=0.0092  Score=41.95  Aligned_cols=56  Identities=16%  Similarity=-0.011  Sum_probs=39.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|+.+. .- .+++||+|+....-.+  .  +   -..++++.+++.|+|||.+++..
T Consensus        77 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~~--~--~---~~~~~l~~~~~~L~pgG~l~i~~  132 (211)
T 2gs9_A           77 PEATWVRAWGEAL-PF-PGESFDVVLLFTTLEF--V--E---DVERVLLEARRVLRPGGALVVGV  132 (211)
T ss_dssp             TTSEEECCCTTSC-CS-CSSCEEEEEEESCTTT--C--S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcEEEEcccccC-CC-CCCcEEEEEEcChhhh--c--C---CHHHHHHHHHHHcCCCCEEEEEe
Confidence            5778888887653 22 4578999997543221  1  1   13689999999999999998753

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=95.48  E-value=0.0095  Score=45.42  Aligned_cols=90  Identities=7%  Similarity=-0.067  Sum_probs=57.6

Q ss_pred             CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCC--cEEEEecCCCCCChHHHHHHHHHHHhhCCCceEeEEe
Q psy4593          24 VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPG--GIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATC  101 (132)
Q Consensus        24 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~--Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~  101 (132)
                      ...++|+|++|..-. .+.....+.-+.+-++.+.+.|+||  |.+++-.-.++  .+....+++.|++.|..|....- 
T Consensus       153 ~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~py--g~~~~~l~~~lk~~F~~V~~~KP-  228 (282)
T 3gcz_A          153 EVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPY--TPLIMEELSRLQLKHGGGLVRVP-  228 (282)
T ss_dssp             CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCC--SHHHHHHHHHHHHHHCCEEECCT-
T ss_pred             CCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCC--CccHHHHHHHHHHhcCCEEEEcC-
Confidence            457899999997522 1111112333334477788999999  99998531111  45678899999999999987542 


Q ss_pred             ccCcCCCceeEEEeecC
Q psy4593         102 VPTYPSGQIGFVLGSQL  118 (132)
Q Consensus       102 ~p~~~~~~~~f~~as~~  118 (132)
                       .+..+..=.|++|-..
T Consensus       229 -aSR~~S~E~Y~V~~~r  244 (282)
T 3gcz_A          229 -LSRNSTHEMYWVSGTR  244 (282)
T ss_dssp             -TSCTTCCCEEEETTCC
T ss_pred             -CCcccCcceeEEEecC
Confidence             4444334456666444

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=95.45  E-value=0.0075  Score=43.94  Aligned_cols=55  Identities=18%  Similarity=0.143  Sum_probs=38.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+. .- .+++||+|+....-.+    .+.   -..+++.+++.|+|||.+++.
T Consensus        85 ~~v~~~~~d~~~l-~~-~~~~fD~V~~~~~l~~----~~d---~~~~l~~~~r~LkpgG~l~~~  139 (260)
T 1vl5_A           85 QQVEYVQGDAEQM-PF-TDERFHIVTCRIAAHH----FPN---PASFVSEAYRVLKKGGQLLLV  139 (260)
T ss_dssp             CSEEEEECCC-CC-CS-CTTCEEEEEEESCGGG----CSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEEecHHhC-CC-CCCCEEEEEEhhhhHh----cCC---HHHHHHHHHHHcCCCCEEEEE
Confidence            5789999997652 22 4578999997632211    111   258999999999999999874

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=95.45  E-value=0.012  Score=40.73  Aligned_cols=55  Identities=15%  Similarity=0.094  Sum_probs=38.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ++++++.+|..+.-   .+++||+|+....-.+   -+.  --..++++.+++.|+|||.+++
T Consensus        80 ~~~~~~~~d~~~~~---~~~~~D~v~~~~~l~~---~~~--~~~~~~l~~~~~~L~~gG~l~~  134 (199)
T 2xvm_A           80 DNLHTRVVDLNNLT---FDRQYDFILSTVVLMF---LEA--KTIPGLIANMQRCTKPGGYNLI  134 (199)
T ss_dssp             TTEEEEECCGGGCC---CCCCEEEEEEESCGGG---SCG--GGHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCcEEEEcchhhCC---CCCCceEEEEcchhhh---CCH--HHHHHHHHHHHHhcCCCeEEEE
Confidence            46899999987642   2578999997643211   111  1237899999999999999764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=95.44  E-value=0.0055  Score=43.77  Aligned_cols=52  Identities=10%  Similarity=0.026  Sum_probs=38.4

Q ss_pred             CCCcEEEEccHHHHhc---CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           6 GYPVLSARQDCTDFMS---GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~---~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .++++++.+|+.+...   . ...+||+|+++..-+        .     +++.+++.|+|||++++..
T Consensus       139 ~~~v~~~~~d~~~~~~~~~~-~~~~fD~I~~~~~~~--------~-----~~~~~~~~LkpgG~lv~~~  193 (227)
T 2pbf_A          139 IDNFKIIHKNIYQVNEEEKK-ELGLFDAIHVGASAS--------E-----LPEILVDLLAENGKLIIPI  193 (227)
T ss_dssp             STTEEEEECCGGGCCHHHHH-HHCCEEEEEECSBBS--------S-----CCHHHHHHEEEEEEEEEEE
T ss_pred             cCCEEEEECChHhcccccCc-cCCCcCEEEECCchH--------H-----HHHHHHHhcCCCcEEEEEE
Confidence            5689999999887430   1 235799999886433        1     2478899999999999864

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=95.43  E-value=0.017  Score=42.62  Aligned_cols=55  Identities=18%  Similarity=0.133  Sum_probs=39.2

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|+.++ .  .+++||+|++...-.    ..+   -...+++.+++.|+|||.+++..
T Consensus       100 ~~~~~~~~d~~~~-~--~~~~fD~v~~~~~l~----~~~---d~~~~l~~~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          100 PHLHFDVADARNF-R--VDKPLDAVFSNAMLH----WVK---EPEAAIASIHQALKSGGRFVAEF  154 (279)
T ss_dssp             TTSCEEECCTTTC-C--CSSCEEEEEEESCGG----GCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCEEEECChhhC-C--cCCCcCEEEEcchhh----hCc---CHHHHHHHHHHhcCCCcEEEEEe
Confidence            5788899998763 2  246899999753211    111   13588999999999999998753

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=95.41  E-value=0.011  Score=43.62  Aligned_cols=54  Identities=15%  Similarity=-0.038  Sum_probs=38.6

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      +++++.+|+.+...   +++||+|+....-.+   ..  .-....+++.+++.|+|||++++
T Consensus       168 ~~~~~~~d~~~~~~---~~~fD~i~~~~~~~~---~~--~~~~~~~l~~~~~~LkpgG~l~i  221 (286)
T 3m70_A          168 NISTALYDINAANI---QENYDFIVSTVVFMF---LN--RERVPSIIKNMKEHTNVGGYNLI  221 (286)
T ss_dssp             CEEEEECCGGGCCC---CSCEEEEEECSSGGG---SC--GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             ceEEEEeccccccc---cCCccEEEEccchhh---CC--HHHHHHHHHHHHHhcCCCcEEEE
Confidence            78899999876432   578999998653211   11  11235899999999999999665

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=95.40  E-value=0.0082  Score=45.22  Aligned_cols=54  Identities=19%  Similarity=0.018  Sum_probs=39.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+. .- .+++||+|+.-..-.    ...    -.++++.+++.|+|||.+++.
T Consensus       167 ~~v~~~~~d~~~~-~~-~~~~fD~V~~~~~l~----~~~----~~~~l~~~~~~LkpgG~l~~~  220 (312)
T 3vc1_A          167 DHVRSRVCNMLDT-PF-DKGAVTASWNNESTM----YVD----LHDLFSEHSRFLKVGGRYVTI  220 (312)
T ss_dssp             TTEEEEECCTTSC-CC-CTTCEEEEEEESCGG----GSC----HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEECChhcC-CC-CCCCEeEEEECCchh----hCC----HHHHHHHHHHHcCCCcEEEEE
Confidence            5799999998653 22 457999999742211    111    689999999999999999864

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=95.40  E-value=0.0096  Score=43.01  Aligned_cols=55  Identities=9%  Similarity=0.043  Sum_probs=39.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+ +.- .+++||+|+....-.+  .  +.   -..+++.+++.|+|||.+++.
T Consensus        69 ~~v~~~~~d~~~-~~~-~~~~fD~v~~~~~l~~--~--~~---~~~~l~~~~~~LkpgG~l~~~  123 (239)
T 1xxl_A           69 ENVRFQQGTAES-LPF-PDDSFDIITCRYAAHH--F--SD---VRKAVREVARVLKQDGRFLLV  123 (239)
T ss_dssp             CSEEEEECBTTB-CCS-CTTCEEEEEEESCGGG--C--SC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCeEEEeccccc-CCC-CCCcEEEEEECCchhh--c--cC---HHHHHHHHHHHcCCCcEEEEE
Confidence            578899999765 222 4578999997632111  1  11   268999999999999999874

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=95.37  E-value=0.0081  Score=43.11  Aligned_cols=81  Identities=11%  Similarity=0.087  Sum_probs=50.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC--------CCCCh
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT--------LWYSL   78 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~--------~~~~~   78 (132)
                      .+++++.+|+.++.   .+.+||+|+.-..-..  . +  .--...+++.+++.|+|||.+++....        ++.. 
T Consensus       115 ~~v~~~~~d~~~~~---~~~~fD~v~~~~~l~~--~-~--~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-  185 (235)
T 3lcc_A          115 EYFSFVKEDVFTWR---PTELFDLIFDYVFFCA--I-E--PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKV-  185 (235)
T ss_dssp             GGEEEECCCTTTCC---CSSCEEEEEEESSTTT--S-C--GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCC-
T ss_pred             cceEEEECchhcCC---CCCCeeEEEEChhhhc--C-C--HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccC-
Confidence            46889999987743   3458999996432110  1 1  112478999999999999999864211        1111 


Q ss_pred             HHHHHHHHHHHhh-CCCceE
Q psy4593          79 DCVGNTLQHCASV-FPRVAY   97 (132)
Q Consensus        79 ~~~~~~~~~l~~v-F~~v~~   97 (132)
                       ....+.+.+++. |..+.+
T Consensus       186 -~~~~~~~~l~~~Gf~~~~~  204 (235)
T 3lcc_A          186 -DVSTFEEVLVPIGFKAVSV  204 (235)
T ss_dssp             -CHHHHHHHHGGGTEEEEEE
T ss_pred             -CHHHHHHHHHHcCCeEEEE
Confidence             134555666665 766554

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=95.36  E-value=0.0082  Score=43.45  Aligned_cols=57  Identities=16%  Similarity=0.091  Sum_probs=40.9

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+. .- .+++||+|+....-.+  .. .  ---..+++.+++.|+|||.+++.
T Consensus       102 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~~--~~-~--~~~~~~l~~~~~~L~pgG~l~~~  158 (266)
T 3ujc_A          102 NKIIFEANDILTK-EF-PENNFDLIYSRDAILA--LS-L--ENKNKLFQKCYKWLKPTGTLLIT  158 (266)
T ss_dssp             TTEEEEECCTTTC-CC-CTTCEEEEEEESCGGG--SC-H--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCeEEEECccccC-CC-CCCcEEEEeHHHHHHh--cC-h--HHHHHHHHHHHHHcCCCCEEEEE
Confidence            7899999998764 22 4679999997532111  11 0  12378899999999999999875

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=95.35  E-value=0.027  Score=41.54  Aligned_cols=55  Identities=15%  Similarity=0.054  Sum_probs=39.1

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      +++++++.+|..++    . ++||+|+.-. ...   ...   ---.++++.+++.|+|||.+++..
T Consensus       113 ~~~~~~~~~d~~~~----~-~~fD~v~~~~~l~~---~~~---~~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          113 LRSKRVLLAGWEQF----D-EPVDRIVSIGAFEH---FGH---ERYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             CSCEEEEESCGGGC----C-CCCSEEEEESCGGG---TCT---TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCeEEEECChhhC----C-CCeeEEEEeCchhh---cCh---HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            35889999997542    2 7899999642 221   111   123789999999999999998753

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=95.33  E-value=0.011  Score=42.21  Aligned_cols=58  Identities=10%  Similarity=0.084  Sum_probs=41.4

Q ss_pred             CCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ..++++++.+|+.+. .- .+++||+|+.-..-.+  .  +   -...+++.+++.|+|||.+++..
T Consensus        96 ~~~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~~--~--~---~~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A           96 EGPDLSFIKGDLSSL-PF-ENEQFEAIMAINSLEW--T--E---EPLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             CBTTEEEEECBTTBC-SS-CTTCEEEEEEESCTTS--S--S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCceEEEcchhcC-CC-CCCCccEEEEcChHhh--c--c---CHHHHHHHHHHHhCCCeEEEEEE
Confidence            357899999998763 22 4679999997432221  1  1   12588999999999999998753

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=95.31  E-value=0.015  Score=41.49  Aligned_cols=56  Identities=21%  Similarity=0.164  Sum_probs=40.4

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ..+++++.+|+.+.- - .+++||+|+....-.    ..+   --..+++.+++.|+|||.+++.
T Consensus        88 ~~~~~~~~~d~~~~~-~-~~~~fD~v~~~~~l~----~~~---~~~~~l~~~~~~L~pgG~l~~~  143 (243)
T 3bkw_A           88 DTGITYERADLDKLH-L-PQDSFDLAYSSLALH----YVE---DVARLFRTVHQALSPGGHFVFS  143 (243)
T ss_dssp             SSSEEEEECCGGGCC-C-CTTCEEEEEEESCGG----GCS---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCceEEEcChhhcc-C-CCCCceEEEEecccc----ccc---hHHHHHHHHHHhcCcCcEEEEE
Confidence            357899999987742 2 457899999753211    111   1368999999999999999874

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=95.30  E-value=0.0065  Score=44.34  Aligned_cols=57  Identities=16%  Similarity=0.090  Sum_probs=39.3

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.++-   .+++||+|++.. .-.    ..+..---..+++.+++.|+|||.+++.
T Consensus        93 ~~~~~~~~d~~~~~---~~~~fD~v~~~~~~l~----~~~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A           93 PDAVLHHGDMRDFS---LGRRFSAVTCMFSSIG----HLAGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             TTSEEEECCTTTCC---CSCCEEEEEECTTGGG----GSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCEEEECChHHCC---ccCCcCEEEEcCchhh----hcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            37889999987642   257899999853 111    1111112357899999999999999984

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=95.30  E-value=0.018  Score=43.25  Aligned_cols=55  Identities=16%  Similarity=0.043  Sum_probs=38.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|..+.     +++||+|+....-.+  .+ .  ---.++++.+++.|+|||.+++..
T Consensus       140 ~~v~~~~~d~~~~-----~~~fD~v~~~~~l~~--~~-~--~~~~~~l~~~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          140 RSRQVLLQGWEDF-----AEPVDRIVSIEAFEH--FG-H--ENYDDFFKRCFNIMPADGRMTVQS  194 (318)
T ss_dssp             SCEEEEESCGGGC-----CCCCSEEEEESCGGG--TC-G--GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CceEEEECChHHC-----CCCcCEEEEeChHHh--cC-H--HHHHHHHHHHHHhcCCCcEEEEEE
Confidence            5789999997553     368999996532110  11 0  123789999999999999999763

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=95.29  E-value=0.051  Score=41.08  Aligned_cols=76  Identities=13%  Similarity=0.042  Sum_probs=48.2

Q ss_pred             cHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc-EEEEecCCCCCChHHHHHHHHHHHhhCC
Q psy4593          15 DCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG-IVCSQAGTLWYSLDCVGNTLQHCASVFP   93 (132)
Q Consensus        15 Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G-il~~~~~~~~~~~~~~~~~~~~l~~vF~   93 (132)
                      |.++   - ...++|+|++|.--. .+.....+.-+..-++.+.+.|+||| .+++-.=.  ...+.+.+.++.+++.|.
T Consensus       131 Df~~---~-~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq--g~~~~~~~~l~~lk~~F~  203 (269)
T 2px2_A          131 DVFY---K-PSEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC--PYMPKVIEKLESLQRRFG  203 (269)
T ss_dssp             CGGG---S-CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC--TTSHHHHHHHHHHHHHHC
T ss_pred             CccC---C-CCCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC--CCchHHHHHHHHHHHHcC
Confidence            7654   2 346899999997521 11111112222225667889999999 88875311  122567788899999999


Q ss_pred             CceE
Q psy4593          94 RVAY   97 (132)
Q Consensus        94 ~v~~   97 (132)
                      .|.+
T Consensus       204 ~vkv  207 (269)
T 2px2_A          204 GGLV  207 (269)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            9874

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=95.27  E-value=0.01  Score=44.33  Aligned_cols=57  Identities=12%  Similarity=-0.028  Sum_probs=41.6

Q ss_pred             CCCcEEEEccHHHHhcCC----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGP----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .++++++.+|+.+.-...    ..++||+|++...-.+        +--..+++.+++.|+|||.+++.
T Consensus        88 ~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~--------~~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A           88 YKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHW--------FDFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             CTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGG--------SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHH--------hCHHHHHHHHHHhcCCCcEEEEE
Confidence            578999999987643220    1278999998643221        13478999999999999999873

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=95.26  E-value=0.011  Score=42.22  Aligned_cols=53  Identities=21%  Similarity=0.193  Sum_probs=38.1

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT   73 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~   73 (132)
                      .++++++.+|+.....  ....||+|+++..-+        .+     ++.+++.|+|||.+++..+.
T Consensus       132 ~~~v~~~~~d~~~~~~--~~~~fD~i~~~~~~~--------~~-----~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          132 SGRVQLVVGDGRMGYA--EEAPYDAIHVGAAAP--------VV-----PQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             TSSEEEEESCGGGCCG--GGCCEEEEEECSBBS--------SC-----CHHHHHTEEEEEEEEEEESC
T ss_pred             CCcEEEEECCcccCcc--cCCCcCEEEECCchH--------HH-----HHHHHHhcCCCcEEEEEEec
Confidence            3579999999875322  246799999886422        12     36888999999999986533

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=95.14  E-value=0.012  Score=42.02  Aligned_cols=58  Identities=14%  Similarity=0.006  Sum_probs=39.2

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++++.+|+.+.-   ..++||+|++....-   ......--...+++.+++.|+|||++++.
T Consensus        79 ~~~~~~~~d~~~~~---~~~~fD~v~~~~~~~---~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           79 RHVDFWVQDMRELE---LPEPVDAITILCDSL---NYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             CCCEEEECCGGGCC---CSSCEEEEEECTTGG---GGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEEcChhhcC---CCCCcCEEEEeCCch---hhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            57899999987642   237899999853100   01111112367899999999999999874

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.13  E-value=0.0083  Score=41.94  Aligned_cols=61  Identities=18%  Similarity=0.152  Sum_probs=40.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCC-C--------CCCCCCCCc-ccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAA-G--------PGRVVCPAE-SLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~-d--------p~~~~~~~~-~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|+.+. .- .+++||+|+.... +        ++  ..... .--..++++.+++.|+|||.+++..
T Consensus        89 ~~i~~~~~d~~~~-~~-~~~~fD~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  159 (215)
T 2pxx_A           89 PQLRWETMDVRKL-DF-PSASFDVVLEKGTLDALLAGERDPW--TVSSEGVHTVDQVLSEVSRVLVPGGRFISMT  159 (215)
T ss_dssp             TTCEEEECCTTSC-CS-CSSCEEEEEEESHHHHHTTTCSCTT--SCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcEEEEcchhcC-CC-CCCcccEEEECcchhhhcccccccc--ccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence            6899999998764 22 4578999996432 1        11  00000 0123789999999999999999864

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=95.09  E-value=0.013  Score=41.29  Aligned_cols=51  Identities=25%  Similarity=0.219  Sum_probs=36.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG   72 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~   72 (132)
                      ++++++.+|+...+..  ..+||+|+.+..-++        +     .+.+++.|+|||.+++...
T Consensus       128 ~~v~~~~~d~~~~~~~--~~~fD~v~~~~~~~~--------~-----~~~~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          128 DNVIVIVGDGTLGYEP--LAPYDRIYTTAAGPK--------I-----PEPLIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             TTEEEEESCGGGCCGG--GCCEEEEEESSBBSS--------C-----CHHHHHTEEEEEEEEEEES
T ss_pred             CCeEEEECCcccCCCC--CCCeeEEEECCchHH--------H-----HHHHHHHcCCCcEEEEEEC
Confidence            4688999998554332  467999998854331        1     1588999999999998653

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=95.08  E-value=0.005  Score=46.04  Aligned_cols=58  Identities=16%  Similarity=0.192  Sum_probs=39.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++++.+|+.++-   .+++||+|++...--    .....---..+++.+++.|+|||.+++..
T Consensus       133 ~~v~~~~~d~~~~~---~~~~fD~v~~~~~~~----~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  190 (299)
T 3g2m_A          133 DRCTLVQGDMSAFA---LDKRFGTVVISSGSI----NELDEADRRGLYASVREHLEPGGKFLLSL  190 (299)
T ss_dssp             TTEEEEECBTTBCC---CSCCEEEEEECHHHH----TTSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceEEEeCchhcCC---cCCCcCEEEECCccc----ccCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            57899999987632   257899888631100    10000112789999999999999999864

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=95.07  E-value=0.0098  Score=44.19  Aligned_cols=55  Identities=13%  Similarity=0.168  Sum_probs=40.3

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++++|+.++-   .+++||+|++...-.    ..+.   ..++++.+++.|+|||.+++..
T Consensus        72 ~~v~~~~~d~~~~~---~~~~fD~v~~~~~l~----~~~~---~~~~l~~~~~~LkpgG~l~~~~  126 (284)
T 3gu3_A           72 YDSEFLEGDATEIE---LNDKYDIAICHAFLL----HMTT---PETMLQKMIHSVKKGGKIICFE  126 (284)
T ss_dssp             SEEEEEESCTTTCC---CSSCEEEEEEESCGG----GCSS---HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CceEEEEcchhhcC---cCCCeeEEEECChhh----cCCC---HHHHHHHHHHHcCCCCEEEEEe
Confidence            37889999988742   246899999865322    1111   2689999999999999999753

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=95.05  E-value=0.018  Score=42.58  Aligned_cols=62  Identities=10%  Similarity=0.120  Sum_probs=40.6

Q ss_pred             CCcEEEEccHHHHhcC-CCCCeecEEEEc--CCCCCCCCCC--CcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSG-PVKNMCGLVVSG--AAGPGRVVCP--AESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D--~~dp~~~~~~--~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      +++.++.+|+.+.-.. ..+++||+|++-  +...   ...  ...---..+++.++++|+|||++++..
T Consensus       109 ~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~---~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          109 DKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAH---LPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             HTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGG---SCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ceeeEeecChhhCccccccCCCeEEEEEcChHHhh---cCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            4677888888775421 135789999984  3321   110  000113789999999999999999754

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=95.00  E-value=0.019  Score=40.06  Aligned_cols=55  Identities=20%  Similarity=0.332  Sum_probs=38.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++++.+|+.+. .- .+++||+|+...  ..  . .  .--..++++.+++.|+|||.+++.
T Consensus        76 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~--~~--~-~--~~~~~~~l~~~~~~L~pgG~l~~~  130 (202)
T 2kw5_A           76 VKITTVQSNLADF-DI-VADAWEGIVSIF--CH--L-P--SSLRQQLYPKVYQGLKPGGVFILE  130 (202)
T ss_dssp             CCEEEECCBTTTB-SC-CTTTCSEEEEEC--CC--C-C--HHHHHHHHHHHHTTCCSSEEEEEE
T ss_pred             CceEEEEcChhhc-CC-CcCCccEEEEEh--hc--C-C--HHHHHHHHHHHHHhcCCCcEEEEE
Confidence            3788888887664 22 357899999732  11  1 1  112478899999999999999875

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=94.98  E-value=0.016  Score=44.67  Aligned_cols=56  Identities=11%  Similarity=0.158  Sum_probs=39.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|..++  . .+++||+|+.+.....   .....  ..+.+..+++.|+|||+++..
T Consensus        99 ~~v~~~~~d~~~~--~-~~~~~D~Ivs~~~~~~---~~~~~--~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A           99 DRIVVIPGKVEEV--S-LPEQVDIIISEPMGYM---LFNER--MLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             TTEEEEESCTTTC--C-CSSCEEEEEECCCBTT---BTTTS--HHHHHHHGGGGEEEEEEEESC
T ss_pred             CcEEEEEcchhhC--C-CCCceeEEEEeCchhc---CChHH--HHHHHHHHHhhcCCCeEEEEe
Confidence            6799999997764  2 2368999999754221   11111  257788899999999999854

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=94.94  E-value=0.014  Score=42.05  Aligned_cols=57  Identities=14%  Similarity=0.041  Sum_probs=39.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+. .- .+++||+|+.-..-.    ..+. ---..+++.+++.|+|||++++.
T Consensus       140 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~----~~~~-~~~~~~l~~~~~~LkpgG~l~i~  196 (254)
T 1xtp_A          140 PVGKFILASMETA-TL-PPNTYDLIVIQWTAI----YLTD-ADFVKFFKHCQQALTPNGYIFFK  196 (254)
T ss_dssp             SEEEEEESCGGGC-CC-CSSCEEEEEEESCGG----GSCH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEEccHHHC-CC-CCCCeEEEEEcchhh----hCCH-HHHHHHHHHHHHhcCCCeEEEEE
Confidence            5788999998763 22 457899999743211    1110 11368899999999999999874

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=94.92  E-value=0.016  Score=40.43  Aligned_cols=57  Identities=16%  Similarity=0.189  Sum_probs=39.3

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+. .- .+++||+|+....-.    ..+ .--...+++.+++.|+|||++++.
T Consensus        71 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~----~~~-~~~~~~~l~~~~~~LkpgG~l~~~  127 (209)
T 2p8j_A           71 FKLNISKGDIRKL-PF-KDESMSFVYSYGTIF----HMR-KNDVKEAIDEIKRVLKPGGLACIN  127 (209)
T ss_dssp             CCCCEEECCTTSC-CS-CTTCEEEEEECSCGG----GSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEECchhhC-CC-CCCceeEEEEcChHH----hCC-HHHHHHHHHHHHHHcCCCcEEEEE
Confidence            5788899998653 22 457899999752111    111 112468899999999999999875

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=94.91  E-value=0.019  Score=45.34  Aligned_cols=57  Identities=14%  Similarity=0.100  Sum_probs=42.1

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      +.+++++.+|..+.  . .++++|+||.+..+.    .....-.-..++....+.|+|||+++-
T Consensus       131 ~~~i~~i~~~~~~~--~-lpe~~DvivsE~~~~----~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          131 EDRVHVLPGPVETV--E-LPEQVDAIVSEWMGY----GLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             TTTEEEEESCTTTC--C-CSSCEEEEECCCCBT----TBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             CceEEEEeeeeeee--c-CCccccEEEeecccc----cccccchhhhHHHHHHhhCCCCceECC
Confidence            46799999997663  2 357899999987654    223333457788888999999999873

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=94.88  E-value=0.018  Score=44.20  Aligned_cols=81  Identities=14%  Similarity=0.105  Sum_probs=46.9

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCC---------CCC-CCc-ccccHHHHHHHHHhcCCCcEEEEecCCCCC
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGR---------VVC-PAE-SLFQASYFELMSRALRPGGIVCSQAGTLWY   76 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~---------~~~-~~~-~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~   76 (132)
                      +++++.+|+....   ...+||+|+.+.+=..+         ... ..+ ..+...|++.+.+.|+|||.+++-..+.+.
T Consensus       185 ~~~i~~~D~l~~~---~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~  261 (344)
T 2f8l_A          185 KMTLLHQDGLANL---LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMF  261 (344)
T ss_dssp             CCEEEESCTTSCC---CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGG
T ss_pred             CceEEECCCCCcc---ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhc
Confidence            5788999976532   34689999998641100         000 001 112347999999999999998764322232


Q ss_pred             ChHHHHHHHHHHHhh
Q psy4593          77 SLDCVGNTLQHCASV   91 (132)
Q Consensus        77 ~~~~~~~~~~~l~~v   91 (132)
                      .......+.+.|.+.
T Consensus       262 ~~~~~~~ir~~l~~~  276 (344)
T 2f8l_A          262 GTSDFAKVDKFIKKN  276 (344)
T ss_dssp             GSTTHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHhC
Confidence            222234555555544

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=94.86  E-value=0.013  Score=41.76  Aligned_cols=58  Identities=19%  Similarity=0.150  Sum_probs=38.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+.-   .+++||+|++-...-   ......--...+++.+++.|+|||.+++.
T Consensus        83 ~~~~~~~~d~~~~~---~~~~~D~v~~~~~~~---~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (239)
T 3bxo_A           83 PDATLHQGDMRDFR---LGRKFSAVVSMFSSV---GYLKTTEELGAAVASFAEHLEPGGVVVVE  140 (239)
T ss_dssp             TTCEEEECCTTTCC---CSSCEEEEEECTTGG---GGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCEEEECCHHHcc---cCCCCcEEEEcCchH---hhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            56889999987642   256899999522100   01111111368999999999999999985

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=94.82  E-value=0.017  Score=43.34  Aligned_cols=63  Identities=17%  Similarity=0.105  Sum_probs=40.3

Q ss_pred             CCcEEEEccHHHH---hcCCCCCeecEEEEcCCCCCCCCCCC-cccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDF---MSGPVKNMCGLVVSGAAGPGRVVCPA-ESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~---l~~~~~~~yDvIi~D~~dp~~~~~~~-~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++++.+|....   +......+||+|++-..-.+  .... ..---..+++.++++|+|||++++..
T Consensus       154 ~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~--ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          154 NNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKW--VHLNWGDEGLKRMFRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             TTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHH--HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccceEEecccccCccccccccCCCcCEEEEChHHHH--hhhcCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            5899999997532   11114578999997542110  0000 00023678999999999999999853

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=94.79  E-value=0.017  Score=43.50  Aligned_cols=60  Identities=12%  Similarity=0.150  Sum_probs=40.3

Q ss_pred             CCcEEEEccHHHHhcCCCCCee---cEEEEcCCC-CCCCCCC-Ccccc-----------cHHHHHHHH-HhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMC---GLVVSGAAG-PGRVVCP-AESLF-----------QASYFELMS-RALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~y---DvIi~D~~d-p~~~~~~-~~~L~-----------t~eF~~~~~-~~L~p~Gil~~   69 (132)
                      .|++++.+|..+.+.    ++|   |+|+++.+- +. .... +...+           ..+||+.+. +.|+|||++++
T Consensus       173 ~~v~~~~~D~~~~~~----~~f~~~D~IvsnPPyi~~-~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~  247 (284)
T 1nv8_A          173 DRFFVRKGEFLEPFK----EKFASIEMILSNPPYVKS-SAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM  247 (284)
T ss_dssp             TSEEEEESSTTGGGG----GGTTTCCEEEECCCCBCG-GGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred             CceEEEECcchhhcc----cccCCCCEEEEcCCCCCc-ccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence            369999999988653    368   999998531 10 0000 00001           128999999 99999999998


Q ss_pred             ec
Q psy4593          70 QA   71 (132)
Q Consensus        70 ~~   71 (132)
                      -.
T Consensus       248 e~  249 (284)
T 1nv8_A          248 EI  249 (284)
T ss_dssp             EC
T ss_pred             EE
Confidence            54

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=94.78  E-value=0.0046  Score=43.95  Aligned_cols=55  Identities=7%  Similarity=-0.028  Sum_probs=35.7

Q ss_pred             CCCCcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q psy4593           5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGI   66 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gi   66 (132)
                      ..++++++.+|+.+.-.. ..++||+|+.- +...     .+. --...+++.+++.|+|||.
T Consensus        80 ~~~~v~~~~~d~~~l~~~-~~~~fD~v~~~~~l~~-----l~~-~~~~~~l~~~~r~LkpgG~  135 (203)
T 1pjz_A           80 AAPGIEIWCGDFFALTAR-DIGHCAAFYDRAAMIA-----LPA-DMRERYVQHLEALMPQACS  135 (203)
T ss_dssp             ECSSSEEEEECCSSSTHH-HHHSEEEEEEESCGGG-----SCH-HHHHHHHHHHHHHSCSEEE
T ss_pred             cCCccEEEECccccCCcc-cCCCEEEEEECcchhh-----CCH-HHHHHHHHHHHHHcCCCcE
Confidence            357899999997653211 11589999853 2211     111 1124589999999999997

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=94.76  E-value=0.016  Score=41.86  Aligned_cols=57  Identities=18%  Similarity=0.166  Sum_probs=39.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++++.+|..+.-   ..++||+|++.....   .... .---.++++.++++|+|||++++.
T Consensus        88 ~~v~~~~~d~~~~~---~~~~fD~v~~~~~~~---~~~~-~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A           88 LKIEFLQGDVLEIA---FKNEFDAVTMFFSTI---MYFD-EEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             CCCEEEESCGGGCC---CCSCEEEEEECSSGG---GGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEECChhhcc---cCCCccEEEEcCCch---hcCC-HHHHHHHHHHHHHHcCCCeEEEEe
Confidence            47899999988742   246899999753211   0111 011367899999999999999875

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=94.75  E-value=0.0083  Score=45.17  Aligned_cols=61  Identities=8%  Similarity=0.011  Sum_probs=40.4

Q ss_pred             CCcEEEEccHHHHh-----cCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFM-----SGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l-----~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++++.+|+.+..     .. .+++||+|++...-.+   .....--...+++.++++|+|||+++...
T Consensus        90 ~~~~~~~~D~~~~~~~~~~~~-~~~~fD~V~~~~~l~~---~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (313)
T 3bgv_A           90 FSAEFITADSSKELLIDKFRD-PQMCFDICSCQFVCHY---SFESYEQADMMLRNACERLSPGGYFIGTT  155 (313)
T ss_dssp             CEEEEEECCTTTSCSTTTCSS-TTCCEEEEEEETCGGG---GGGSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ceEEEEEecccccchhhhccc-CCCCEEEEEEecchhh---ccCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            47889999987752     11 2358999997542211   00000112589999999999999999864

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=94.68  E-value=0.026  Score=42.04  Aligned_cols=54  Identities=4%  Similarity=-0.066  Sum_probs=34.6

Q ss_pred             EEEEccHHHHhc----CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593          10 LSARQDCTDFMS----GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus        10 ~v~~~Dg~~~l~----~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +...+|+-++..    ...+++||+|+.-..=.+    .+.   -..+++.++++|+|||.+++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~----~~d---~~~~l~~~~r~LkpgG~l~i~  171 (292)
T 2aot_A          114 AWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYY----VKD---IPATLKFFHSLLGTNAKMLII  171 (292)
T ss_dssp             EEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGG----CSC---HHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEecchhhhhhhhccccCCCceeEEEEeeeeee----cCC---HHHHHHHHHHHcCCCcEEEEE
Confidence            444566665542    113578999996432111    111   257899999999999999874

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=94.60  E-value=0.021  Score=40.58  Aligned_cols=54  Identities=9%  Similarity=0.067  Sum_probs=37.8

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++++.+|+... .- .+++||+|++...-.    ..+.   ..++++.+++.|+|||.+++.
T Consensus        85 ~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~----~~~~---~~~~l~~~~~~L~pgG~l~i~  138 (219)
T 1vlm_A           85 GVFVLKGTAENL-PL-KDESFDFALMVTTIC----FVDD---PERALKEAYRILKKGGYLIVG  138 (219)
T ss_dssp             TCEEEECBTTBC-CS-CTTCEEEEEEESCGG----GSSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEEcccccC-CC-CCCCeeEEEEcchHh----hccC---HHHHHHHHHHHcCCCcEEEEE
Confidence            578888887552 22 457899999753211    1111   268999999999999999875

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=94.59  E-value=0.02  Score=43.98  Aligned_cols=76  Identities=11%  Similarity=-0.045  Sum_probs=48.1

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC-cccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA-ESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~-~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      +.+++.+|+..+.    +++||+|+.+..-.   .+.. ..-...++++.++++|+|||.+++-.... ..      ...
T Consensus       246 ~~~~~~~d~~~~~----~~~fD~Iv~~~~~~---~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-~~------~~~  311 (343)
T 2pjd_A          246 EGEVFASNVFSEV----KGRFDMIISNPPFH---DGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF-LP------YPD  311 (343)
T ss_dssp             CCEEEECSTTTTC----CSCEEEEEECCCCC---SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT-SS------HHH
T ss_pred             CCEEEEccccccc----cCCeeEEEECCCcc---cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC-CC------cHH
Confidence            4677888887643    46899999975321   1110 01124789999999999999998743221 11      124


Q ss_pred             HHHhhCCCceE
Q psy4593          87 HCASVFPRVAY   97 (132)
Q Consensus        87 ~l~~vF~~v~~   97 (132)
                      .+++.|..+..
T Consensus       312 ~l~~~f~~~~~  322 (343)
T 2pjd_A          312 VLDETFGFHEV  322 (343)
T ss_dssp             HHHHHHSCCEE
T ss_pred             HHHHhcCceEE
Confidence            56677777765

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=94.39  E-value=0.0065  Score=44.05  Aligned_cols=59  Identities=12%  Similarity=0.054  Sum_probs=37.6

Q ss_pred             c-EEEEccHHHHhcC--CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           9 V-LSARQDCTDFMSG--PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         9 v-~v~~~Dg~~~l~~--~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      + +++..|..+....  ...++||+|+.-..-.   ..++..---..+++.++++|+|||.+++.
T Consensus       136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~---~~~~~~~~~~~~l~~~~~~LkpgG~li~~  197 (265)
T 2i62_A          136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLD---AACPDLPAYRTALRNLGSLLKPGGFLVMV  197 (265)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH---HHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             heeEEEeeeccCCCCCccccCCccEEEEhhhhh---hhcCChHHHHHHHHHHHhhCCCCcEEEEE
Confidence            6 8888998765321  1227899999643210   00111112367899999999999999874

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=94.32  E-value=0.026  Score=40.24  Aligned_cols=50  Identities=24%  Similarity=0.160  Sum_probs=36.2

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG   72 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~   72 (132)
                      +++++.+|+.+.+.  ..++||+|+++..-.        ++     .+.+++.|+|||.+++...
T Consensus       117 ~v~~~~~d~~~~~~--~~~~fD~v~~~~~~~--------~~-----~~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          117 NIKLILGDGTLGYE--EEKPYDRVVVWATAP--------TL-----LCKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             SEEEEESCGGGCCG--GGCCEEEEEESSBBS--------SC-----CHHHHHTEEEEEEEEEEEC
T ss_pred             CeEEEECCcccccc--cCCCccEEEECCcHH--------HH-----HHHHHHHcCCCcEEEEEEc
Confidence            78999999877332  246899999885422        11     1468899999999987643

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=94.18  E-value=0.018  Score=41.06  Aligned_cols=56  Identities=20%  Similarity=0.176  Sum_probs=38.8

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++++.+|..+.- -  .++||+|++.. .-.    ..+..--..++++.+++.|+|||++++.
T Consensus        85 ~~~~~~~d~~~~~-~--~~~fD~v~~~~~~l~----~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A           85 KPRLACQDISNLN-I--NRKFDLITCCLDSTN----YIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             CCEEECCCGGGCC-C--SCCEEEEEECTTGGG----GCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CeEEEecccccCC-c--cCCceEEEEcCcccc----ccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            7889999987642 2  37899999853 111    1111112368899999999999999874

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=94.14  E-value=0.024  Score=39.87  Aligned_cols=55  Identities=9%  Similarity=0.025  Sum_probs=36.6

Q ss_pred             EEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593          10 LSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus        10 ~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      +++.+|+.++.....+++||+|+....-.    ..+.   ..++++.+++.|+|||.+++..
T Consensus        76 ~~~~~d~~~~~~~~~~~~fD~v~~~~~l~----~~~~---~~~~l~~~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A           76 HVVLGDIETMDMPYEEEQFDCVIFGDVLE----HLFD---PWAVIEKVKPYIKQNGVILASI  130 (230)
T ss_dssp             EEEESCTTTCCCCSCTTCEEEEEEESCGG----GSSC---HHHHHHHTGGGEEEEEEEEEEE
T ss_pred             cEEEcchhhcCCCCCCCccCEEEECChhh----hcCC---HHHHHHHHHHHcCCCCEEEEEe
Confidence            56777776542222457899999742211    1111   2689999999999999998753

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=93.82  E-value=0.041  Score=39.56  Aligned_cols=52  Identities=19%  Similarity=0.202  Sum_probs=35.2

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT   73 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~   73 (132)
                      ++++++.+|+..-+..  ...||+|+++..-+    .    +     .+.+.+.|+|||.+++....
T Consensus       140 ~~v~~~~~d~~~~~~~--~~~fD~Ii~~~~~~----~----~-----~~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          140 KNVHVILGDGSKGFPP--KAPYDVIIVTAGAP----K----I-----PEPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             CSEEEEESCGGGCCGG--GCCEEEEEECSBBS----S----C-----CHHHHHTEEEEEEEEEEECS
T ss_pred             CCcEEEECCcccCCCC--CCCccEEEECCcHH----H----H-----HHHHHHhcCCCcEEEEEEec
Confidence            3588999998322222  24599999875433    1    1     13688899999999987544

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=93.80  E-value=0.05  Score=41.78  Aligned_cols=88  Identities=10%  Similarity=-0.007  Sum_probs=53.9

Q ss_pred             CCeecEEEEcCCCCCCCCCCC-c------ccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceE
Q psy4593          25 KNMCGLVVSGAAGPGRVVCPA-E------SLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAY   97 (132)
Q Consensus        25 ~~~yDvIi~D~~dp~~~~~~~-~------~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~   97 (132)
                      ..+||+|++|.--+.  .+-. +      .+.+- -.+.+-++|+|||.+++-+  ..........+++.|++.|..|+.
T Consensus       204 ~~k~DvV~SDMApn~--sGh~yqQC~DHarii~L-al~fA~~vLkPGGtfV~Kv--yggaDr~se~lv~~LaR~F~~Vr~  278 (320)
T 2hwk_A          204 VPKYDIIFVNVRTPY--KYHHYQQCEDHAIKLSM-LTKKACLHLNPGGTCVSIG--YGYADRASESIIGAIARQFKFSRV  278 (320)
T ss_dssp             SCCEEEEEEECCCCC--CSCHHHHHHHHHHHHHH-THHHHGGGEEEEEEEEEEE--CCCCSHHHHHHHHHHHTTEEEEEE
T ss_pred             cCcCCEEEEcCCCCC--CCccccccchHHHHHHH-HHHHHHHhcCCCceEEEEE--ecCCcccHHHHHHHHHHhcceeee
Confidence            368999999986552  1111 0      01111 3456778999999999853  111223568899999999999887


Q ss_pred             eEEeccCcCCCceeEEEeecCC
Q psy4593          98 GATCVPTYPSGQIGFVLGSQLL  119 (132)
Q Consensus        98 ~~~~~p~~~~~~~~f~~as~~~  119 (132)
                      .+-.. +.. ..=.|++|..-.
T Consensus       279 vKP~A-SR~-StEvf~La~gf~  298 (320)
T 2hwk_A          279 CKPKS-SLE-ETEVLFVFIGYD  298 (320)
T ss_dssp             ECCTT-CCS-TTCEEEEEEEEC
T ss_pred             eCCCC-ccc-cceEEEEEEeec
Confidence            43211 222 234567776543

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=93.73  E-value=0.064  Score=40.63  Aligned_cols=44  Identities=14%  Similarity=-0.014  Sum_probs=29.2

Q ss_pred             CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593          24 VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus        24 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+++||+|++-..-..  .....+.  ..+++.++++|+|||+++...
T Consensus       126 ~~~~FD~V~~~~~lhy--~~~~~~~--~~~l~~~~r~LkpGG~~i~~~  169 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHY--SFHPRHY--ATVMNNLSELTASGGKVLITT  169 (302)
T ss_dssp             CSSCEEEEEEESCGGG--TCSTTTH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCeeEEEECchHHH--hCCHHHH--HHHHHHHHHHcCCCCEEEEEe
Confidence            3578999986421100  0011122  789999999999999998754

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=93.67  E-value=0.041  Score=39.52  Aligned_cols=61  Identities=7%  Similarity=-0.191  Sum_probs=39.8

Q ss_pred             CCCCcEEEEccHHHHhcCC---CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           5 RGYPVLSARQDCTDFMSGP---VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~---~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ...+++++.+|+.+.-...   ....||+|+....-.+   .+.  --...+++.++++|+|||.+++.
T Consensus        99 ~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~---~~~--~~~~~~l~~~~~~LkpgG~l~i~  162 (245)
T 3ggd_A           99 TAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHH---IPV--EKRELLGQSLRILLGKQGAMYLI  162 (245)
T ss_dssp             CCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTT---SCG--GGHHHHHHHHHHHHTTTCEEEEE
T ss_pred             cccCceEEECcccccccccccccccCccEEEEcchhhc---CCH--HHHHHHHHHHHHHcCCCCEEEEE
Confidence            3458899999976643220   0134999998754331   111  11378999999999999987653

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=93.53  E-value=0.071  Score=40.27  Aligned_cols=56  Identities=13%  Similarity=-0.046  Sum_probs=37.7

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+|++++.+|..+   . ..+.||+|++-..-.    ..+ .--...+++.++++|+|||.+++.
T Consensus       216 ~~~v~~~~~d~~~---~-~~~~~D~v~~~~vl~----~~~-~~~~~~~l~~~~~~L~pgG~l~i~  271 (334)
T 2ip2_A          216 GERVSLVGGDMLQ---E-VPSNGDIYLLSRIIG----DLD-EAASLRLLGNCREAMAGDGRVVVI  271 (334)
T ss_dssp             TTSEEEEESCTTT---C-CCSSCSEEEEESCGG----GCC-HHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             CCcEEEecCCCCC---C-CCCCCCEEEEchhcc----CCC-HHHHHHHHHHHHHhcCCCCEEEEE
Confidence            3578899998765   2 236799999643211    001 001258899999999999998875

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=93.48  E-value=0.068  Score=40.44  Aligned_cols=54  Identities=15%  Similarity=0.012  Sum_probs=35.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +|++++.+|..   .. .+..||+|++-. ...     .+. --...+++.++++|+|||.+++.
T Consensus       219 ~~v~~~~~d~~---~~-~p~~~D~v~~~~vlh~-----~~~-~~~~~~l~~~~~~L~pgG~l~i~  273 (332)
T 3i53_A          219 GRAQVVVGSFF---DP-LPAGAGGYVLSAVLHD-----WDD-LSAVAILRRCAEAAGSGGVVLVI  273 (332)
T ss_dssp             TTEEEEECCTT---SC-CCCSCSEEEEESCGGG-----SCH-HHHHHHHHHHHHHHTTTCEEEEE
T ss_pred             cCeEEecCCCC---CC-CCCCCcEEEEehhhcc-----CCH-HHHHHHHHHHHHhcCCCCEEEEE
Confidence            67888888865   23 223799998632 111     000 01267899999999999999875

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=93.22  E-value=0.15  Score=38.93  Aligned_cols=55  Identities=11%  Similarity=-0.124  Sum_probs=36.4

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+|++++.+|..   .. .+ .||+|+.-..-.    ..+ .--...+++.++++|+|||.+++.
T Consensus       231 ~~~v~~~~~d~~---~~-~p-~~D~v~~~~vlh----~~~-d~~~~~~L~~~~~~LkpgG~l~i~  285 (348)
T 3lst_A          231 AGRWKVVEGDFL---RE-VP-HADVHVLKRILH----NWG-DEDSVRILTNCRRVMPAHGRVLVI  285 (348)
T ss_dssp             TTSEEEEECCTT---TC-CC-CCSEEEEESCGG----GSC-HHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CCCeEEEecCCC---CC-CC-CCcEEEEehhcc----CCC-HHHHHHHHHHHHHhcCCCCEEEEE
Confidence            367888888875   23 23 899998632111    000 001157899999999999999874

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=93.11  E-value=0.11  Score=40.14  Aligned_cols=56  Identities=5%  Similarity=-0.111  Sum_probs=36.1

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+|++++.+|..   .. .+..||+|++-..-.    ..+ .--...+++.++++|+|||.+++.
T Consensus       251 ~~~v~~~~~d~~---~~-~p~~~D~v~~~~vlh----~~~-d~~~~~~L~~~~~~L~pgG~l~i~  306 (369)
T 3gwz_A          251 ADRCEILPGDFF---ET-IPDGADVYLIKHVLH----DWD-DDDVVRILRRIATAMKPDSRLLVI  306 (369)
T ss_dssp             TTTEEEEECCTT---TC-CCSSCSEEEEESCGG----GSC-HHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             CCceEEeccCCC---CC-CCCCceEEEhhhhhc----cCC-HHHHHHHHHHHHHHcCCCCEEEEE
Confidence            367888888876   22 223799998632110    000 001136899999999999999874

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=93.10  E-value=0.25  Score=37.62  Aligned_cols=83  Identities=11%  Similarity=-0.016  Sum_probs=46.0

Q ss_pred             CCcEEEEccHHHHhcCCC-CCeecEEEEcCCCCCCCCCCC----c----------cc-----ccHHHHHHHHHhcCCCcE
Q psy4593           7 YPVLSARQDCTDFMSGPV-KNMCGLVVSGAAGPGRVVCPA----E----------SL-----FQASYFELMSRALRPGGI   66 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~-~~~yDvIi~D~~dp~~~~~~~----~----------~L-----~t~eF~~~~~~~L~p~Gi   66 (132)
                      .+++++.+|+.++..... ..+||+|++|++-..  .+.-    .          .+     ...+.++.+.+.|+ +|.
T Consensus       153 ~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg--~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~  229 (309)
T 2b9e_A          153 SCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSG--SGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQR  229 (309)
T ss_dssp             CSEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC--------------------CCHHHHHHHHHHHHHHHTTCTT-CCE
T ss_pred             CeEEEEeCChHhcCccccccCCCCEEEEcCCcCC--CCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCE
Confidence            468999999988644311 147999999985321  2210    0          10     12356677777776 998


Q ss_pred             EEEecCCCCCChHHHHHHHHHHHhhCCC
Q psy4593          67 VCSQAGTLWYSLDCVGNTLQHCASVFPR   94 (132)
Q Consensus        67 l~~~~~~~~~~~~~~~~~~~~l~~vF~~   94 (132)
                      ++..+++...  ..-..+++.+.+..+.
T Consensus       230 lvYsTCs~~~--~Ene~~v~~~l~~~~~  255 (309)
T 2b9e_A          230 LVYSTCSLCQ--EENEDVVRDALQQNPG  255 (309)
T ss_dssp             EEEEESCCCG--GGTHHHHHHHHTTSTT
T ss_pred             EEEECCCCCh--HHhHHHHHHHHHhCCC
Confidence            8866555332  2223344444444443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=92.94  E-value=0.019  Score=41.31  Aligned_cols=54  Identities=13%  Similarity=-0.073  Sum_probs=37.3

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.++..   +.+||+|+.|..-.+  .....     ..+..+++.|+|||++++.
T Consensus       127 ~~~~~~~~d~~~~~~---~~~~D~v~~~~~~~~--~~~~~-----~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          127 DKIEFICGDFLLLAS---FLKADVVFLSPPWGG--PDYAT-----AETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             GGEEEEESCHHHHGG---GCCCSEEEECCCCSS--GGGGG-----SSSBCTTTSCSSCHHHHHH
T ss_pred             cCeEEEECChHHhcc---cCCCCEEEECCCcCC--cchhh-----hHHHHHHhhcCCcceeHHH
Confidence            579999999999873   368999999864221  11111     1344688899999997653

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=92.48  E-value=0.17  Score=37.07  Aligned_cols=72  Identities=8%  Similarity=-0.058  Sum_probs=48.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      .+++++.+|+.+-+..  .++||+|++--      ++   .-.-.+++..+.+.|+++|.++++..   .+.   ..+.+
T Consensus        66 ~~i~~~~~d~l~~l~~--~~~~D~IviaG------~G---g~~i~~Il~~~~~~L~~~~~lVlq~~---~~~---~~vr~  128 (225)
T 3kr9_A           66 EKIQVRLANGLAAFEE--TDQVSVITIAG------MG---GRLIARILEEGLGKLANVERLILQPN---NRE---DDLRI  128 (225)
T ss_dssp             TTEEEEECSGGGGCCG--GGCCCEEEEEE------EC---HHHHHHHHHHTGGGCTTCCEEEEEES---SCH---HHHHH
T ss_pred             ceEEEEECchhhhccc--CcCCCEEEEcC------CC---hHHHHHHHHHHHHHhCCCCEEEEECC---CCH---HHHHH
Confidence            4799999999876654  23799988631      22   12257899999999999999999743   233   34445


Q ss_pred             HHHhh-CCCc
Q psy4593          87 HCASV-FPRV   95 (132)
Q Consensus        87 ~l~~v-F~~v   95 (132)
                      .|.+. |.-+
T Consensus       129 ~L~~~Gf~i~  138 (225)
T 3kr9_A          129 WLQDHGFQIV  138 (225)
T ss_dssp             HHHHTTEEEE
T ss_pred             HHHHCCCEEE
Confidence            55544 5433

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=92.48  E-value=0.31  Score=37.11  Aligned_cols=62  Identities=19%  Similarity=0.142  Sum_probs=44.8

Q ss_pred             CeecEEEEcCCCCCCCCCCCcccccHHHHHHH--------------HHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhh
Q psy4593          26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELM--------------SRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASV   91 (132)
Q Consensus        26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~--------------~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~v   91 (132)
                      .+||+|+++.-.|.   .       ...|++|              -++|+|||.+++-+-.  +.......++..+.+.
T Consensus       210 grYDlVfvNv~Tpy---R-------~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYG--yADR~SE~vV~alARk  277 (324)
T 3trk_A          210 GRYDLVVINIHTPF---R-------IHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYG--YADRTSERVICVLGRK  277 (324)
T ss_dssp             CCEEEEEEECCCCC---C-------SSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECC--CCSHHHHHHHHHHHTT
T ss_pred             CceeEEEEecCCcc---c-------cchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeec--ccccchHHHHHHHHhh
Confidence            69999999987762   1       2234444              4679999999986522  3334567889999999


Q ss_pred             CCCceEeE
Q psy4593          92 FPRVAYGA   99 (132)
Q Consensus        92 F~~v~~~~   99 (132)
                      |..+.+.+
T Consensus       278 F~~~rv~~  285 (324)
T 3trk_A          278 FRSSRALK  285 (324)
T ss_dssp             EEEEEEEC
T ss_pred             heeeeeec
Confidence            99887654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=92.37  E-value=0.087  Score=38.34  Aligned_cols=49  Identities=18%  Similarity=0.208  Sum_probs=34.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++++.+|+.+. .- .+++||+|+.-.. +             .+++.+++.|+|||.+++..
T Consensus       130 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~-~-------------~~l~~~~~~L~pgG~l~~~~  178 (269)
T 1p91_A          130 PQVTFCVASSHRL-PF-SDTSMDAIIRIYA-P-------------CKAEELARVVKPGGWVITAT  178 (269)
T ss_dssp             TTSEEEECCTTSC-SB-CTTCEEEEEEESC-C-------------CCHHHHHHHEEEEEEEEEEE
T ss_pred             CCcEEEEcchhhC-CC-CCCceeEEEEeCC-h-------------hhHHHHHHhcCCCcEEEEEE
Confidence            4677888887542 22 3568999996311 1             24899999999999998753

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=92.31  E-value=0.35  Score=40.40  Aligned_cols=64  Identities=19%  Similarity=0.198  Sum_probs=45.5

Q ss_pred             CCeecEEEEcCCCCCCCCCCCcccccHHHHHH--------------HHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHh
Q psy4593          25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFEL--------------MSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCAS   90 (132)
Q Consensus        25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~--------------~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~   90 (132)
                      ..+||+|++|.-.|.   .       ...|++              .-++|+|||.+++-+-.  +.......++..+.+
T Consensus       219 ~~ryDlvfvn~~t~y---r-------~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YG--yADr~sE~vv~alaR  286 (670)
T 4gua_A          219 QARYDLVFINIGTKY---R-------NHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYG--YADRNSEDVVTALAR  286 (670)
T ss_dssp             CCCEEEEEECCCCCC---C-------SCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC--CCSHHHHHHHHHHHH
T ss_pred             CCcccEEEEecCCCc---c-------cchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEee--ccccchHHHHHHHHh
Confidence            469999999987762   1       122443              34689999999986522  334457789999999


Q ss_pred             hCCCceEeEE
Q psy4593          91 VFPRVAYGAT  100 (132)
Q Consensus        91 vF~~v~~~~~  100 (132)
                      .|..+++.+-
T Consensus       287 kF~~~rv~~p  296 (670)
T 4gua_A          287 KFVRVSAARP  296 (670)
T ss_dssp             TEEEEEEECC
T ss_pred             heeeeeeeCC
Confidence            9998877543

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=92.27  E-value=0.091  Score=37.00  Aligned_cols=58  Identities=10%  Similarity=-0.026  Sum_probs=35.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC-cccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA-ESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~-~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+ +.- .++. |.|++...-.   .... ..--..++++.+++.|+|||.+++.
T Consensus        81 ~~v~~~~~d~~~-l~~-~~~~-d~v~~~~~~~---~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           81 PNLLYLWATAER-LPP-LSGV-GELHVLMPWG---SLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             TTEEEEECCSTT-CCS-CCCE-EEEEEESCCH---HHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             CceEEEecchhh-CCC-CCCC-CEEEEEccch---hhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            478888888776 333 3344 7766443211   0000 0000168899999999999999874

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=92.19  E-value=0.12  Score=37.73  Aligned_cols=54  Identities=17%  Similarity=0.017  Sum_probs=37.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.++ .- .+++||+|++-..-.    ...   --..+++.++++|+ ||.+++.
T Consensus        76 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~----~~~---~~~~~l~~~~~~Lk-gG~~~~~  129 (261)
T 3ege_A           76 PQVEWFTGYAENL-AL-PDKSVDGVISILAIH----HFS---HLEKSFQEMQRIIR-DGTIVLL  129 (261)
T ss_dssp             TTEEEECCCTTSC-CS-CTTCBSEEEEESCGG----GCS---SHHHHHHHHHHHBC-SSCEEEE
T ss_pred             cCCEEEECchhhC-CC-CCCCEeEEEEcchHh----hcc---CHHHHHHHHHHHhC-CcEEEEE
Confidence            4788899998652 22 457999999754211    111   12689999999999 9965543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=92.16  E-value=0.5  Score=35.05  Aligned_cols=60  Identities=10%  Similarity=-0.066  Sum_probs=39.2

Q ss_pred             CCCcEEEEccHHHH--h-------cCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDF--M-------SGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~--l-------~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .++++++.+|..+.  +       +.....+||+|++-..=.    ..+.. --...++.++++|+|||.+++.
T Consensus       127 ~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh----~~~d~-~~~~~l~~~~~~L~pGG~l~i~  195 (274)
T 2qe6_A          127 DPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLH----YLSPD-VVDRVVGAYRDALAPGSYLFMT  195 (274)
T ss_dssp             CTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGG----GSCTT-THHHHHHHHHHHSCTTCEEEEE
T ss_pred             CCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhh----hCCcH-HHHHHHHHHHHhCCCCcEEEEE
Confidence            46889999998642  2       111124799998654211    11111 2368899999999999999875

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=92.12  E-value=0.77  Score=31.73  Aligned_cols=68  Identities=4%  Similarity=-0.075  Sum_probs=42.9

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHH
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQH   87 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~   87 (132)
                      +++++.+|+.++     +.+||+|+.|.+-.     ....-...++++.+.+.|  +|+++...    ........+.+.
T Consensus        98 ~~~~~~~d~~~~-----~~~~D~v~~~~p~~-----~~~~~~~~~~l~~~~~~l--~~~~~~~~----~~~~~~~~~~~~  161 (207)
T 1wy7_A           98 KFKVFIGDVSEF-----NSRVDIVIMNPPFG-----SQRKHADRPFLLKAFEIS--DVVYSIHL----AKPEVRRFIEKF  161 (207)
T ss_dssp             SEEEEESCGGGC-----CCCCSEEEECCCCS-----SSSTTTTHHHHHHHHHHC--SEEEEEEE----CCHHHHHHHHHH
T ss_pred             CEEEEECchHHc-----CCCCCEEEEcCCCc-----cccCCchHHHHHHHHHhc--CcEEEEEe----CCcCCHHHHHHH
Confidence            789999998773     24899999997421     111123478899999998  77776542    122334444455


Q ss_pred             HHhh
Q psy4593          88 CASV   91 (132)
Q Consensus        88 l~~v   91 (132)
                      +++.
T Consensus       162 l~~~  165 (207)
T 1wy7_A          162 SWEH  165 (207)
T ss_dssp             HHHT
T ss_pred             HHHC
Confidence            5543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=92.07  E-value=0.067  Score=41.24  Aligned_cols=57  Identities=9%  Similarity=-0.113  Sum_probs=34.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +|++++.+|..+.-.. -++.||+|+.-. ..-+    +..  -...+++.++++|+|||.+++.
T Consensus       229 ~~v~~~~~d~~~~~~~-~p~~~D~v~~~~vlh~~----~~~--~~~~~l~~~~~~L~pgG~l~i~  286 (363)
T 3dp7_A          229 ERIHGHGANLLDRDVP-FPTGFDAVWMSQFLDCF----SEE--EVISILTRVAQSIGKDSKVYIM  286 (363)
T ss_dssp             GGEEEEECCCCSSSCC-CCCCCSEEEEESCSTTS----CHH--HHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cceEEEEccccccCCC-CCCCcCEEEEechhhhC----CHH--HHHHHHHHHHHhcCCCcEEEEE
Confidence            4677788875432000 125788888532 2110    000  1257899999999999999874

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=91.78  E-value=0.032  Score=45.24  Aligned_cols=56  Identities=11%  Similarity=0.188  Sum_probs=38.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|..++  . ..++||+|+++....   ....+.  ..+.+..+++.|+|||+++..
T Consensus       207 ~~v~~~~~d~~~~--~-~~~~fD~Ivs~~~~~---~~~~e~--~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          207 DRIVVIPGKVEEV--S-LPEQVDIIISEPMGY---MLFNER--MLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             TTEEEEESCTTTC--C-CSSCEEEEECCCCHH---HHTCHH--HHHHHHHGGGGEEEEEEEESC
T ss_pred             CcEEEEECchhhC--c-cCCCeEEEEEeCchH---hcCcHH--HHHHHHHHHHhcCCCCEEEEE
Confidence            6899999998764  2 246899999864311   001111  256777889999999999854

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=91.72  E-value=0.052  Score=45.70  Aligned_cols=56  Identities=16%  Similarity=0.260  Sum_probs=42.5

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      +.+|+|+.+|.+++  + .+++.|+||...-+.   ...- ++ ..|.+....+.|+|||++.-
T Consensus       410 ~dkVtVI~gd~eev--~-LPEKVDIIVSEwMG~---fLl~-E~-mlevL~Ardr~LKPgGimiP  465 (637)
T 4gqb_A          410 GSQVTVVSSDMREW--V-APEKADIIVSELLGS---FADN-EL-SPECLDGAQHFLKDDGVSIP  465 (637)
T ss_dssp             GGGEEEEESCTTTC--C-CSSCEEEEECCCCBT---TBGG-GC-HHHHHHHHGGGEEEEEEEES
T ss_pred             CCeEEEEeCcceec--c-CCcccCEEEEEcCcc---cccc-cC-CHHHHHHHHHhcCCCcEEcc
Confidence            46799999998885  3 468999999998755   2323 33 24778888999999999863

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=91.48  E-value=0.064  Score=39.04  Aligned_cols=53  Identities=15%  Similarity=0.197  Sum_probs=35.3

Q ss_pred             EEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593          11 SARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus        11 v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++.+|+.+. .- .+++||+|++...-    ......  ..++++.+++.|+|||.+++..
T Consensus       100 ~~~~d~~~~-~~-~~~~fD~v~~~~~~----~~~~~~--~~~~l~~~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          100 VVEAKAEDL-PF-PSGAFEAVLALGDV----LSYVEN--KDKAFSEIRRVLVPDGLLIATV  152 (260)
T ss_dssp             EEECCTTSC-CS-CTTCEEEEEECSSH----HHHCSC--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECcHHHC-CC-CCCCEEEEEEcchh----hhcccc--HHHHHHHHHHHcCCCeEEEEEe
Confidence            566776542 22 35789999974210    011111  5789999999999999999864

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=91.47  E-value=0.055  Score=41.18  Aligned_cols=57  Identities=12%  Similarity=-0.007  Sum_probs=37.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +|++++.+|..+.-.. ..+.||+|+.-. ...    -+..  -...+++.++++|+|||.+++.
T Consensus       229 ~~v~~~~~d~~~~~~~-~~~~~D~v~~~~vlh~----~~~~--~~~~~l~~~~~~L~pgG~l~i~  286 (352)
T 3mcz_A          229 GRVEFFEKNLLDARNF-EGGAADVVMLNDCLHY----FDAR--EAREVIGHAAGLVKPGGALLIL  286 (352)
T ss_dssp             GGEEEEECCTTCGGGG-TTCCEEEEEEESCGGG----SCHH--HHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CceEEEeCCcccCccc-CCCCccEEEEeccccc----CCHH--HHHHHHHHHHHHcCCCCEEEEE
Confidence            4688888886654211 235699999632 111    0000  1267999999999999999874

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=91.45  E-value=0.035  Score=41.13  Aligned_cols=90  Identities=14%  Similarity=0.107  Sum_probs=48.7

Q ss_pred             cEEEEccHHHHhc--C--CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec--CCCCC------
Q psy4593           9 VLSARQDCTDFMS--G--PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA--GTLWY------   76 (132)
Q Consensus         9 v~v~~~Dg~~~l~--~--~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~--~~~~~------   76 (132)
                      ++++..|+.+.+.  .  ..+++||+|+.-..-.+  ..+. .---..+++.+++.|+|||.+++..  ...+.      
T Consensus       152 ~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~--~~~~-~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~  228 (289)
T 2g72_A          152 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEA--VSPD-LASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR  228 (289)
T ss_dssp             EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHH--HCSS-HHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred             ceEEecccCCCCCccccccCCCCCCEEEehhhhhh--hcCC-HHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCee
Confidence            4566667765332  1  12457999997432110  0100 0012678999999999999998741  11110      


Q ss_pred             ---ChHHHHHHHHHHHhh-CCCceEeEEe
Q psy4593          77 ---SLDCVGNTLQHCASV-FPRVAYGATC  101 (132)
Q Consensus        77 ---~~~~~~~~~~~l~~v-F~~v~~~~~~  101 (132)
                         ..-....+.+.|++. |..+......
T Consensus       229 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  257 (289)
T 2g72_A          229 LTVVPVSEEEVREALVRSGYKVRDLRTYI  257 (289)
T ss_dssp             EECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             eeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence               000134556666665 8766654443

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=91.28  E-value=0.12  Score=41.04  Aligned_cols=59  Identities=12%  Similarity=0.145  Sum_probs=38.1

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCC-CCCCCCCC---------CcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAA-GPGRVVCP---------AESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~-dp~~~~~~---------~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      +.+++.+|.....   ...+||+|+.+.+ ........         +..-....|++.+.+.|+|||.+++
T Consensus       237 ~~~i~~gD~l~~~---~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~  305 (445)
T 2okc_A          237 RSPIVCEDSLEKE---PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  305 (445)
T ss_dssp             CCSEEECCTTTSC---CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCEeeCCCCCCc---ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence            6789999976642   2348999999863 11000000         0011125899999999999998875

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=91.11  E-value=0.13  Score=39.44  Aligned_cols=55  Identities=18%  Similarity=0.030  Sum_probs=36.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|..+.+    ...||+|++...-.    ..+ .--...+++.+++.|+|||.+++.
T Consensus       232 ~~v~~~~~d~~~~~----~~~~D~v~~~~vl~----~~~-~~~~~~~l~~~~~~L~pgG~l~i~  286 (374)
T 1qzz_A          232 DRVTVAEGDFFKPL----PVTADVVLLSFVLL----NWS-DEDALTILRGCVRALEPGGRLLVL  286 (374)
T ss_dssp             TTEEEEECCTTSCC----SCCEEEEEEESCGG----GSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEeCCCCCcC----CCCCCEEEEecccc----CCC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence            47889999976522    23499998743211    001 001147999999999999988764

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=91.09  E-value=0.26  Score=36.26  Aligned_cols=70  Identities=7%  Similarity=-0.091  Sum_probs=48.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      .+++++.+|+.+-+..  .++||+|++--      ++.   -.-.+++....+.|+++|.++++.   -.+.   ..+.+
T Consensus        72 ~~I~~~~gD~l~~~~~--~~~~D~IviaG------mGg---~lI~~IL~~~~~~l~~~~~lIlqp---~~~~---~~lr~  134 (230)
T 3lec_A           72 SKIDVRLANGLSAFEE--ADNIDTITICG------MGG---RLIADILNNDIDKLQHVKTLVLQP---NNRE---DDLRK  134 (230)
T ss_dssp             TTEEEEECSGGGGCCG--GGCCCEEEEEE------ECH---HHHHHHHHHTGGGGTTCCEEEEEE---SSCH---HHHHH
T ss_pred             CcEEEEECchhhcccc--ccccCEEEEeC------Cch---HHHHHHHHHHHHHhCcCCEEEEEC---CCCh---HHHHH
Confidence            5899999999987644  34799988631      221   235778999999999999999974   2333   34444


Q ss_pred             HHHhh-CC
Q psy4593          87 HCASV-FP   93 (132)
Q Consensus        87 ~l~~v-F~   93 (132)
                      .|.+. |.
T Consensus       135 ~L~~~Gf~  142 (230)
T 3lec_A          135 WLAANDFE  142 (230)
T ss_dssp             HHHHTTEE
T ss_pred             HHHHCCCE
Confidence            55544 54

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=91.01  E-value=0.27  Score=36.48  Aligned_cols=70  Identities=7%  Similarity=-0.069  Sum_probs=48.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      .+++++.+|+.+-+..  .++||+|++-   .   ++.   -.-.+++....+.|+++|.++++.   -.+.   ..+.+
T Consensus        72 ~~I~v~~gD~l~~~~~--~~~~D~Ivia---g---mGg---~lI~~IL~~~~~~L~~~~~lIlq~---~~~~---~~lr~  134 (244)
T 3gnl_A           72 EQIDVRKGNGLAVIEK--KDAIDTIVIA---G---MGG---TLIRTILEEGAAKLAGVTKLILQP---NIAA---WQLRE  134 (244)
T ss_dssp             TTEEEEECSGGGGCCG--GGCCCEEEEE---E---ECH---HHHHHHHHHTGGGGTTCCEEEEEE---SSCH---HHHHH
T ss_pred             ceEEEEecchhhccCc--cccccEEEEe---C---Cch---HHHHHHHHHHHHHhCCCCEEEEEc---CCCh---HHHHH
Confidence            5799999999887643  2469999872   1   221   234778999999999999999974   2333   34445


Q ss_pred             HHHhh-CC
Q psy4593          87 HCASV-FP   93 (132)
Q Consensus        87 ~l~~v-F~   93 (132)
                      .|.+. |.
T Consensus       135 ~L~~~Gf~  142 (244)
T 3gnl_A          135 WSEQNNWL  142 (244)
T ss_dssp             HHHHHTEE
T ss_pred             HHHHCCCE
Confidence            55554 54

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=90.96  E-value=0.097  Score=39.91  Aligned_cols=55  Identities=13%  Similarity=0.027  Sum_probs=36.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|..+.+    ...||+|+....-.    ..+ .--..++++.++++|+|||.+++.
T Consensus       233 ~~v~~~~~d~~~~~----~~~~D~v~~~~vl~----~~~-~~~~~~~l~~~~~~L~pgG~l~i~  287 (360)
T 1tw3_A          233 DRVDVVEGDFFEPL----PRKADAIILSFVLL----NWP-DHDAVRILTRCAEALEPGGRILIH  287 (360)
T ss_dssp             TTEEEEECCTTSCC----SSCEEEEEEESCGG----GSC-HHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CceEEEeCCCCCCC----CCCccEEEEccccc----CCC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence            47889999876422    23499998743211    001 001147999999999999988764

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=90.59  E-value=0.29  Score=37.64  Aligned_cols=64  Identities=13%  Similarity=0.029  Sum_probs=37.7

Q ss_pred             HHHHHHHHHhcCCCcEEEEe--cCCCCCChHH-------------------HHHHHHHHHhh-CCCceEeEEeccCcCCC
Q psy4593          51 ASYFELMSRALRPGGIVCSQ--AGTLWYSLDC-------------------VGNTLQHCASV-FPRVAYGATCVPTYPSG  108 (132)
Q Consensus        51 ~eF~~~~~~~L~p~Gil~~~--~~~~~~~~~~-------------------~~~~~~~l~~v-F~~v~~~~~~~p~~~~~  108 (132)
                      ...++.|+++|+|||.+++.  ........+.                   ..++.+-++++ |..+++.    |+  ++
T Consensus       263 ~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~----~~--~~  336 (353)
T 4a6d_A          263 SHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFK----KT--GA  336 (353)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEE----CC--SS
T ss_pred             HHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEE----Ec--CC
Confidence            56799999999999988764  1111111110                   12344455555 8777763    22  23


Q ss_pred             ceeEEEeecCCC
Q psy4593         109 QIGFVLGSQLLK  120 (132)
Q Consensus       109 ~~~f~~as~~~~  120 (132)
                      .+..++|.|+--
T Consensus       337 ~~~~i~ArKgt~  348 (353)
T 4a6d_A          337 IYDAILARKGTH  348 (353)
T ss_dssp             SCEEEEEECCCC
T ss_pred             ceEEEEEEecCc
Confidence            566788887643

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=90.56  E-value=0.025  Score=41.00  Aligned_cols=60  Identities=5%  Similarity=-0.154  Sum_probs=34.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ++++++.+|+..+-.. ..+.+|.|.+....+.  .......-..++++.++++|+|||.+++
T Consensus        78 ~~v~~~~~d~~~l~~~-~~d~v~~i~~~~~~~~--~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           78 SNVVFVIAAAESLPFE-LKNIADSISILFPWGT--LLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             SSEEEECCBTTBCCGG-GTTCEEEEEEESCCHH--HHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             CCeEEEEcCHHHhhhh-ccCeEEEEEEeCCCcH--HhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            4677777887654111 1245555555443220  0000011236789999999999999987

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=90.42  E-value=0.084  Score=39.68  Aligned_cols=55  Identities=13%  Similarity=-0.045  Sum_probs=36.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +|++++.+|..+.  . ..+.||+|++ .+...     .+. --..++++.++++|+|||.+++.
T Consensus       215 ~~v~~~~~d~~~~--~-~~~~~D~v~~~~~l~~-----~~~-~~~~~~l~~~~~~L~pgG~l~i~  270 (335)
T 2r3s_A          215 SRYHTIAGSAFEV--D-YGNDYDLVLLPNFLHH-----FDV-ATCEQLLRKIKTALAVEGKVIVF  270 (335)
T ss_dssp             GGEEEEESCTTTS--C-CCSCEEEEEEESCGGG-----SCH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceEEEecccccC--C-CCCCCcEEEEcchhcc-----CCH-HHHHHHHHHHHHhCCCCcEEEEE
Confidence            4688888887653  2 2345999997 33221     110 01268899999999999977654

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=90.36  E-value=0.31  Score=41.65  Aligned_cols=58  Identities=14%  Similarity=0.118  Sum_probs=43.8

Q ss_pred             CCCcEEEEccHHHHhc----CCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           6 GYPVLSARQDCTDFMS----GPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~----~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      +.+|+|+.+|.+++--    . ..++.|+||...-..    ....+ ...|.+..+.+-|+|||++.-
T Consensus       471 ~d~VtVI~gd~eev~lp~~~~-~~ekVDIIVSElmGs----fl~nE-L~pe~Ld~v~r~Lkp~Gi~iP  532 (745)
T 3ua3_A          471 KRRVTIIESDMRSLPGIAKDR-GFEQPDIIVSELLGS----FGDNE-LSPECLDGVTGFLKPTTISIP  532 (745)
T ss_dssp             TTCSEEEESCGGGHHHHHHHT-TCCCCSEEEECCCBT----TBGGG-SHHHHHHTTGGGSCTTCEEES
T ss_pred             CCeEEEEeCchhhcccccccC-CCCcccEEEEecccc----ccchh-ccHHHHHHHHHhCCCCcEEEC
Confidence            3679999999999832    1 257899999998533    22333 357889999999999999873

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=90.17  E-value=0.36  Score=38.40  Aligned_cols=49  Identities=10%  Similarity=0.068  Sum_probs=35.9

Q ss_pred             cEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ++++.+|+.+++..    +||+|++|.+..    +     ...++.+.++ .|+|+|++.+.+
T Consensus       339 v~~~~~d~~~~~~~----~fD~Vv~dPPr~----g-----~~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          339 AEFEVASDREVSVK----GFDTVIVDPPRA----G-----LHPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             EEEEECCTTTCCCT----TCSEEEECCCTT----C-----SCHHHHHHHH-HHCCSEEEEEES
T ss_pred             EEEEECChHHcCcc----CCCEEEEcCCcc----c-----hHHHHHHHHH-hcCCCcEEEEEC
Confidence            78899998886532    799999986422    1     2356777776 499999998854

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=90.01  E-value=0.19  Score=41.24  Aligned_cols=61  Identities=11%  Similarity=0.019  Sum_probs=38.9

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCCC------CCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRVV------CPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~------~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      +.+++.+|....-.. ...+||+|+.+.+= .....      ..+..-....|++.+.+.|+|||.+++
T Consensus       243 ~~~I~~gDtL~~~~~-~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~  310 (541)
T 2ar0_A          243 GGAIRLGNTLGSDGE-NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV  310 (541)
T ss_dssp             TBSEEESCTTSHHHH-TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCeEeCCCcccccc-cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEE
Confidence            478999998754322 24689999998641 10000      001111234799999999999998775

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=89.99  E-value=0.17  Score=38.95  Aligned_cols=54  Identities=15%  Similarity=0.046  Sum_probs=34.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|..+   . .+. ||+|+.-..-.    ..+ .--...+++.++++|+|||.+++.
T Consensus       252 ~~v~~~~~d~~~---~-~~~-~D~v~~~~~lh----~~~-d~~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          252 SGIEHVGGDMFA---S-VPQ-GDAMILKAVCH----NWS-DEKCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             TTEEEEECCTTT---C-CCC-EEEEEEESSGG----GSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEeCCccc---C-CCC-CCEEEEecccc----cCC-HHHHHHHHHHHHHhcCCCCEEEEE
Confidence            568888888765   2 223 89998632211    001 001238999999999999998864

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=89.97  E-value=0.2  Score=37.32  Aligned_cols=31  Identities=6%  Similarity=-0.039  Sum_probs=25.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGP   38 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp   38 (132)
                      .|++++.+|+.++++. ..++||+|++|..=+
T Consensus       145 ~~i~~~~~D~~~~L~~-~~~~fDvV~lDP~y~  175 (258)
T 2oyr_A          145 ERLQLIHASSLTALTD-ITPRPQVVYLDPMFP  175 (258)
T ss_dssp             HHEEEEESCHHHHSTT-CSSCCSEEEECCCCC
T ss_pred             cCEEEEECCHHHHHHh-CcccCCEEEEcCCCC
Confidence            5789999999999987 445799999997433

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=89.86  E-value=0.34  Score=35.09  Aligned_cols=55  Identities=9%  Similarity=-0.135  Sum_probs=34.4

Q ss_pred             CCcEEEEccHHHHhcCC---CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGP---VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~---~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|  ++....   .+++||+|++...-.    ..+.   ...+.+.+++.++|||.+++.
T Consensus       101 ~~v~~~~~d--~~~~~~~~~~~~~fD~v~~~~~l~----~~~~---~~~~~~~~~~l~~~gG~l~~~  158 (275)
T 3bkx_A          101 DRLTVHFNT--NLSDDLGPIADQHFDRVVLAHSLW----YFAS---ANALALLFKNMAAVCDHVDVA  158 (275)
T ss_dssp             GGEEEECSC--CTTTCCGGGTTCCCSEEEEESCGG----GSSC---HHHHHHHHHHHTTTCSEEEEE
T ss_pred             CceEEEECC--hhhhccCCCCCCCEEEEEEccchh----hCCC---HHHHHHHHHHHhCCCCEEEEE
Confidence            578888888  332221   347899999753211    1111   134677777777789999875

>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}

Probab=89.72  E-value=0.37  Score=32.77  Aligned_cols=41  Identities=12%  Similarity=0.181  Sum_probs=32.3

Q ss_pred             CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593          24 VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus        24 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      .++.||+|++=.. +   .+ ...++++..+..+.+.|+|||.+..
T Consensus        56 p~stYD~V~~lt~-~---~~-~~~~l~r~li~~l~~aLkpgG~L~g   96 (136)
T 2km1_A           56 ENAKYETVHYLTP-E---AQ-TDIKFPKKLISVLADSLKPNGSLIG   96 (136)
T ss_dssp             CSSSCCSEEEECC-C---SS-CSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred             CcccccEEEEecC-C---cc-chhhcCHHHHHHHHHHhCCCCEEEe
Confidence            5689999996332 2   22 3467889999999999999999985

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=89.48  E-value=0.2  Score=38.84  Aligned_cols=55  Identities=9%  Similarity=0.002  Sum_probs=36.1

Q ss_pred             CCcEEEEccHHHHhcCCCC--------------CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593           7 YPVLSARQDCTDFMSGPVK--------------NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG   72 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~--------------~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~   72 (132)
                      ++++++.+|+.+++....+              .+||+|++|.+..    +    +     .+.+.+.|+++|.++.-++
T Consensus       261 ~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~----g----~-----~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          261 DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS----G----L-----DSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT----C----C-----CHHHHHHHTTSSEEEEEES
T ss_pred             CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcc----c----c-----HHHHHHHHhCCCEEEEEEC
Confidence            4789999999998743111              3799999996422    1    1     2345555678888876554


Q ss_pred             CC
Q psy4593          73 TL   74 (132)
Q Consensus        73 ~~   74 (132)
                      ++
T Consensus       328 ~p  329 (369)
T 3bt7_A          328 NP  329 (369)
T ss_dssp             CH
T ss_pred             CH
Confidence            44

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=89.27  E-value=0.18  Score=39.32  Aligned_cols=39  Identities=13%  Similarity=0.177  Sum_probs=28.9

Q ss_pred             CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593          25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus        25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++||+|+.-..=.    ..+   --.++++.+++.|+|||++++.
T Consensus       169 ~~~fD~I~~~~vl~----h~~---d~~~~l~~~~r~LkpgG~l~i~  207 (416)
T 4e2x_A          169 EGPANVIYAANTLC----HIP---YVQSVLEGVDALLAPDGVFVFE  207 (416)
T ss_dssp             HCCEEEEEEESCGG----GCT---THHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEEEECChHH----hcC---CHHHHHHHHHHHcCCCeEEEEE
Confidence            46899999753211    111   1378999999999999999975

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=89.13  E-value=0.54  Score=32.47  Aligned_cols=50  Identities=6%  Similarity=-0.098  Sum_probs=33.2

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      +++++.+|+.++     +++||+|+.|..=.+     ...-...++++.+.+.|  |++++.
T Consensus        96 ~~~~~~~d~~~~-----~~~~D~v~~~~p~~~-----~~~~~~~~~l~~~~~~~--g~~~~~  145 (200)
T 1ne2_A           96 GVNFMVADVSEI-----SGKYDTWIMNPPFGS-----VVKHSDRAFIDKAFETS--MWIYSI  145 (200)
T ss_dssp             TSEEEECCGGGC-----CCCEEEEEECCCC------------CHHHHHHHHHHE--EEEEEE
T ss_pred             CCEEEECcHHHC-----CCCeeEEEECCCchh-----ccCchhHHHHHHHHHhc--CcEEEE
Confidence            688999998773     268999999864211     11112368999999999  565554

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=89.01  E-value=0.39  Score=36.49  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=26.6

Q ss_pred             CeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593          26 NMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus        26 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ..||+|++|..=.    .    |  ...+..+++.|+|||.+++
T Consensus       150 ~~fD~v~~d~sf~----s----l--~~vL~e~~rvLkpGG~lv~  183 (291)
T 3hp7_A          150 GLPSFASIDVSFI----S----L--NLILPALAKILVDGGQVVA  183 (291)
T ss_dssp             CCCSEEEECCSSS----C----G--GGTHHHHHHHSCTTCEEEE
T ss_pred             CCCCEEEEEeeHh----h----H--HHHHHHHHHHcCcCCEEEE
Confidence            3599999987421    1    2  6679999999999999876

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=88.90  E-value=0.21  Score=37.51  Aligned_cols=56  Identities=11%  Similarity=0.017  Sum_probs=35.9

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++....|..+. .-...++||+|++= +..     ... .-.....++.++++|+|||++++-
T Consensus       195 ~V~F~~~dl~~~-~~~~~~~fDlI~crnvli-----yf~-~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          195 YVEFSSVNLLEK-QYNVPGPFDAIFCRNVMI-----YFD-KTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             TEEEEECCTTCS-SCCCCCCEEEEEECSSGG-----GSC-HHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             cCeEEecccCCC-CCCcCCCeeEEEECCchH-----hCC-HHHHHHHHHHHHHHhCCCcEEEEE
Confidence            577777786541 00013689999982 211     111 111367899999999999999984

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=88.81  E-value=0.068  Score=38.70  Aligned_cols=29  Identities=3%  Similarity=0.019  Sum_probs=20.4

Q ss_pred             CCcEEEEccHHH-HhcCCC---CCeecEEEEcC
Q psy4593           7 YPVLSARQDCTD-FMSGPV---KNMCGLVVSGA   35 (132)
Q Consensus         7 ~rv~v~~~Dg~~-~l~~~~---~~~yDvIi~D~   35 (132)
                      .+++++.+|+.+ +++...   +++||+|+++.
T Consensus       116 ~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~np  148 (254)
T 2h00_A          116 DLIKVVKVPQKTLLMDALKEESEIIYDFCMCNP  148 (254)
T ss_dssp             TTEEEEECCTTCSSTTTSTTCCSCCBSEEEECC
T ss_pred             ccEEEEEcchhhhhhhhhhcccCCcccEEEECC
Confidence            469999999876 232212   25899999984

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=88.41  E-value=0.88  Score=33.62  Aligned_cols=55  Identities=7%  Similarity=-0.057  Sum_probs=33.7

Q ss_pred             CCcEEEE---ccHHHHhcC-CCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcC---C--CcEEEE
Q psy4593           7 YPVLSAR---QDCTDFMSG-PVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALR---P--GGIVCS   69 (132)
Q Consensus         7 ~rv~v~~---~Dg~~~l~~-~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~---p--~Gil~~   69 (132)
                      ++++++.   +|...-+.. ...++||+|+. |+.-.     .   -.-..+++.+++.|+   |  ||++++
T Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~-----~---~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          139 ASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSF-----H---QAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSC-----G---GGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             CCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccC-----h---HHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            4677773   332222210 01468999986 76421     1   114678999999999   9  997654

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=88.33  E-value=0.23  Score=39.84  Aligned_cols=55  Identities=11%  Similarity=0.062  Sum_probs=36.2

Q ss_pred             CCcEEEEccHHH---HhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTD---FMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~---~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++++.+|+..   .+.. ....||+|++..+     . ....  -.+.++.+.+.|+|||.+++.
T Consensus       301 ~nV~~i~gD~~~~~~~~~~-~~~~FDvIvvn~~-----l-~~~d--~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          301 NNVEFSLKKSFVDNNRVAE-LIPQCDVILVNNF-----L-FDED--LNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             CCEEEEESSCSTTCHHHHH-HGGGCSEEEECCT-----T-CCHH--HHHHHHHHHTTCCTTCEEEES
T ss_pred             CceEEEEcCcccccccccc-ccCCCCEEEEeCc-----c-cccc--HHHHHHHHHHhCCCCeEEEEe
Confidence            578888887652   1211 1357999997532     1 1111  245678999999999999874

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=87.96  E-value=0.48  Score=36.53  Aligned_cols=20  Identities=25%  Similarity=0.164  Sum_probs=17.7

Q ss_pred             HHHHHHHHHhcCCCcEEEEe
Q psy4593          51 ASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus        51 ~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ..+++.++++|+|||.+++.
T Consensus       278 ~~~L~~~~~~L~pgG~l~i~  297 (364)
T 3p9c_A          278 ATLLKNCYDALPAHGKVVLV  297 (364)
T ss_dssp             HHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEE
Confidence            47899999999999998874

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=87.62  E-value=0.44  Score=36.74  Aligned_cols=20  Identities=20%  Similarity=0.081  Sum_probs=17.6

Q ss_pred             HHHHHHHHHhcCCCcEEEEe
Q psy4593          51 ASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus        51 ~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ..+++.++++|+|||.+++.
T Consensus       280 ~~~l~~~~~~L~pgG~l~i~  299 (368)
T 3reo_A          280 LKLLKNCYAALPDHGKVIVA  299 (368)
T ss_dssp             HHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEE
Confidence            46899999999999998874

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=86.94  E-value=1.3  Score=34.27  Aligned_cols=52  Identities=10%  Similarity=0.127  Sum_probs=33.2

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCccc--ccHHHHHHHHHhc
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESL--FQASYFELMSRAL   61 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L--~t~eF~~~~~~~L   61 (132)
                      ++++++.+|+.+.-.  ..++||+|++|.+=.. -.+....+  .-.++++.+++.|
T Consensus       268 ~~i~~~~~D~~~~~~--~~~~fD~Ii~npPyg~-r~~~~~~~~~ly~~~~~~l~r~l  321 (373)
T 3tm4_A          268 DKIKFIQGDATQLSQ--YVDSVDFAISNLPYGL-KIGKKSMIPDLYMKFFNELAKVL  321 (373)
T ss_dssp             GGCEEEECCGGGGGG--TCSCEEEEEEECCCC-------CCHHHHHHHHHHHHHHHE
T ss_pred             CceEEEECChhhCCc--ccCCcCEEEECCCCCc-ccCcchhHHHHHHHHHHHHHHHc
Confidence            478999999988643  3578999999864110 00111111  1267889999999

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=86.04  E-value=0.26  Score=39.68  Aligned_cols=57  Identities=9%  Similarity=-0.046  Sum_probs=37.1

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .++++++.+|..+.--...-..+|+|++..+     . -...  -.+.++.+.+.|+|||.+++.
T Consensus       231 ~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~-----~-F~pd--l~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          231 HAEYTLERGDFLSEEWRERIANTSVIFVNNF-----A-FGPE--VDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             CCEEEEEECCTTSHHHHHHHHTCSEEEECCT-----T-CCHH--HHHHHHHHHTTSCTTCEEEES
T ss_pred             CCCeEEEECcccCCccccccCCccEEEEccc-----c-cCch--HHHHHHHHHHcCCCCcEEEEe
Confidence            4689999999765321101136999998642     1 0111  245567788999999999974

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=85.28  E-value=0.9  Score=33.78  Aligned_cols=41  Identities=12%  Similarity=0.007  Sum_probs=27.5

Q ss_pred             CCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593          25 KNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus        25 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      +++||+|+++..-.+   -....  -...++.+++.| |||.+++..
T Consensus       108 ~~~fD~Vv~~~~l~~---~~~~~--~~~~l~~l~~lL-PGG~l~lS~  148 (261)
T 3iv6_A          108 AGHFDFVLNDRLINR---FTTEE--ARRACLGMLSLV-GSGTVRASV  148 (261)
T ss_dssp             TTCCSEEEEESCGGG---SCHHH--HHHHHHHHHHHH-TTSEEEEEE
T ss_pred             CCCccEEEEhhhhHh---CCHHH--HHHHHHHHHHhC-cCcEEEEEe
Confidence            468999998743110   01111  245789999999 999999864

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=84.92  E-value=0.93  Score=34.49  Aligned_cols=55  Identities=11%  Similarity=-0.059  Sum_probs=34.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +|++++.+|..+.  .  -..+|+|+....-.    ..+ .-....+++.++++|+|||.+++.
T Consensus       240 ~~v~~~~~d~~~~--~--~~~~D~v~~~~vlh----~~~-d~~~~~~l~~~~~~L~pgG~l~i~  294 (359)
T 1x19_A          240 DRMRGIAVDIYKE--S--YPEADAVLFCRILY----SAN-EQLSTIMCKKAFDAMRSGGRLLIL  294 (359)
T ss_dssp             TTEEEEECCTTTS--C--CCCCSEEEEESCGG----GSC-HHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             CCEEEEeCccccC--C--CCCCCEEEEechhc----cCC-HHHHHHHHHHHHHhcCCCCEEEEE
Confidence            4688888887653  1  12248888642211    011 011367899999999999998653

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=84.84  E-value=0.81  Score=34.77  Aligned_cols=53  Identities=9%  Similarity=-0.085  Sum_probs=33.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcC-CCCCCCCCCCcccccHHHHHHHHHhcCC---CcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGA-AGPGRVVCPAESLFQASYFELMSRALRP---GGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p---~Gil~~~   70 (132)
                      ++++++.+|..+   . .+ .||+|+.-. ...     .+. .-...+++.++++|+|   ||.+++.
T Consensus       231 ~~v~~~~~d~~~---~-~p-~~D~v~~~~~lh~-----~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~  287 (352)
T 1fp2_A          231 NNLTYVGGDMFT---S-IP-NADAVLLKYILHN-----WTD-KDCLRILKKCKEAVTNDGKRGKVTII  287 (352)
T ss_dssp             TTEEEEECCTTT---C-CC-CCSEEEEESCGGG-----SCH-HHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             CCcEEEeccccC---C-CC-CccEEEeehhhcc-----CCH-HHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            457777777644   2 12 388888532 111     010 0123889999999999   9988764

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=84.76  E-value=1.2  Score=35.10  Aligned_cols=53  Identities=19%  Similarity=0.078  Sum_probs=37.3

Q ss_pred             CCcEEEEccHHHHhcC--CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSG--PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~--~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++++.+|+.+++..  ..+++||+|++|.+-.     .   +  .++.+.+. .++|++++.+.
T Consensus       334 ~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~-----g---~--~~~~~~l~-~~~p~~ivyvs  388 (433)
T 1uwv_A          334 QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARA-----G---A--AGVMQQII-KLEPIRIVYVS  388 (433)
T ss_dssp             CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTT-----C---C--HHHHHHHH-HHCCSEEEEEE
T ss_pred             CceEEEECCHHHHhhhhhhhcCCCCEEEECCCCc-----c---H--HHHHHHHH-hcCCCeEEEEE
Confidence            3799999999887654  1346899999986422     1   1  25666665 48999998764

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=84.22  E-value=0.44  Score=39.19  Aligned_cols=84  Identities=11%  Similarity=-0.044  Sum_probs=45.3

Q ss_pred             cEEEEccHHHHhcCCCCCeecEEEEcCCCCC--CCC--------------------CCCcccccHHHHHHHHHhcCCCcE
Q psy4593           9 VLSARQDCTDFMSGPVKNMCGLVVSGAAGPG--RVV--------------------CPAESLFQASYFELMSRALRPGGI   66 (132)
Q Consensus         9 v~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~--~~~--------------------~~~~~L~t~eF~~~~~~~L~p~Gi   66 (132)
                      +.++.+|....-.. ...+||+||.+.+=..  +..                    .++..-..-.|++.+.+.|+|||.
T Consensus       312 i~i~~gDtL~~~~~-~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr  390 (544)
T 3khk_A          312 FGKKNADSFLDDQH-PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGS  390 (544)
T ss_dssp             CCSSSCCTTTSCSC-TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEE
T ss_pred             cceeccchhcCccc-ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCce
Confidence            44467776543222 3468999999864110  000                    111111223699999999999999


Q ss_pred             EEEec--CCCCCChHHHHHHHHHHHhhCC
Q psy4593          67 VCSQA--GTLWYSLDCVGNTLQHCASVFP   93 (132)
Q Consensus        67 l~~~~--~~~~~~~~~~~~~~~~l~~vF~   93 (132)
                      +++=.  +..+........+.+.|.+.+.
T Consensus       391 ~aiVlP~g~L~~~~~~~~~iRk~Lle~~~  419 (544)
T 3khk_A          391 MALLLANGSMSSNTNNEGEIRKTLVEQDL  419 (544)
T ss_dssp             EEEEEETHHHHCCGGGHHHHHHHHHHTTC
T ss_pred             EEEEecchhhhcCcchHHHHHHHHHhCCc
Confidence            76432  1111221234556666665543

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=83.53  E-value=1.7  Score=34.03  Aligned_cols=59  Identities=12%  Similarity=0.067  Sum_probs=39.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCC--CcEEEEec
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRP--GGIVCSQA   71 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p--~Gil~~~~   71 (132)
                      .+++++.+|+.++..   ..+||+||+|.+=.   ......---.++|+.+.+.|++  ||-+.+=+
T Consensus       283 ~~I~~~~~D~~~l~~---~~~fD~Iv~NPPYG---~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  343 (384)
T 3ldg_A          283 DVVKLKQMRLQDFKT---NKINGVLISNPPYG---ERLLDDKAVDILYNEMGETFAPLKTWSQFILT  343 (384)
T ss_dssp             TTEEEEECCGGGCCC---CCCSCEEEECCCCT---TTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred             CceEEEECChHHCCc---cCCcCEEEECCchh---hccCCHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence            468999999988533   35899999997422   2222111235688888888876  77766543

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=80.68  E-value=1.2  Score=33.79  Aligned_cols=54  Identities=9%  Similarity=-0.120  Sum_probs=33.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCC---CcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRP---GGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p---~Gil~~~   70 (132)
                      ++++++.+|..+   . .. .||+|++-..=.    ..+. --...+++.++++|+|   ||.+++.
T Consensus       236 ~~v~~~~~d~~~---~-~~-~~D~v~~~~vlh----~~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~  292 (358)
T 1zg3_A          236 ENLNFVGGDMFK---S-IP-SADAVLLKWVLH----DWND-EQSLKILKNSKEAISHKGKDGKVIII  292 (358)
T ss_dssp             SSEEEEECCTTT---C-CC-CCSEEEEESCGG----GSCH-HHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred             CCcEEEeCccCC---C-CC-CceEEEEccccc----CCCH-HHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            457777777654   2 12 488888532111    0010 0123889999999999   9988763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d2b2ca1	312	c.66.1.17 (A:3-314) Spermidine synthase {Caenorhab	5e-15
d1inla_	295	c.66.1.17 (A:) Spermidine synthase {Thermotoga mar	6e-14
d2o07a1	285	c.66.1.17 (A:16-300) Spermidine synthase {Human (H	2e-12
d1uira_	312	c.66.1.17 (A:) Spermidine synthase {Thermus thermo	2e-11
d1iy9a_	274	c.66.1.17 (A:) Spermidine synthase {Bacillus subti	2e-11
d1xj5a_	290	c.66.1.17 (A:) Spermidine synthase {Thale cress (A	7e-11
d1mjfa_	276	c.66.1.17 (A:) Putative spermidine synthetase PF01	9e-10

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} Length = 312

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 67.5 bits (164), Expect = 5e-15
 Identities = 29/73 (39%), Positives = 45/73 (61%)

Query: 44  PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
           PAESLF  SY+EL+  AL+  GI+ SQ  ++W  L  + + +     +FP V Y  + V 
Sbjct: 193 PAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVS 252

Query: 104 TYPSGQIGFVLGS 116
           TYPSG +G+++ +
Sbjct: 253 TYPSGSMGYLICA 265

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} Length = 295

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

 Score = 64.4 bits (156), Expect = 6e-14
 Identities = 15/73 (20%), Positives = 28/73 (38%)

Query: 44  PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
               LF   +++    AL+  G+  ++    +Y +       +  + VFP        + 
Sbjct: 177 QGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMT 236

Query: 104 TYPSGQIGFVLGS 116
           TYPSG   +   S
Sbjct: 237 TYPSGMWSYTFAS 249

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 2e-12
 Identities = 38/73 (52%), Positives = 48/73 (65%)

Query: 44  PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
           PAESLF+ SY++LM  AL+  G++C Q    W  LD +    Q C S+FP VAY    +P
Sbjct: 165 PAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIP 224

Query: 104 TYPSGQIGFVLGS 116
           TYPSGQIGF+L S
Sbjct: 225 TYPSGQIGFMLCS 237

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} Length = 312

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

 Score = 57.9 bits (139), Expect = 2e-11
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 3/104 (2%)

Query: 14  QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73
            D   ++    +    +V+     P     PA  L+   ++ L+   L PGG++  Q G 
Sbjct: 139 DDARAYLERT-EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197

Query: 74  LWYSLDCVGNTLQH-CASVFPRVAYGATCVPTYPSGQIGFVLGS 116
           +  +   V   +       F  V      +P +     GF+L S
Sbjct: 198 ILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLN-FGFLLAS 240

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} Length = 274

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

 Score = 57.5 bits (138), Expect = 2e-11
 Identities = 22/73 (30%), Positives = 38/73 (52%)

Query: 44  PAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATCVP 103
           PA +LF   ++  +++AL+  GI  +Q    W++ + + N  +    +FP        +P
Sbjct: 162 PAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIP 221

Query: 104 TYPSGQIGFVLGS 116
           TYPSG   F +GS
Sbjct: 222 TYPSGLWTFTIGS 234

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 290

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 56.0 bits (134), Expect = 7e-11
 Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 4/104 (3%)

Query: 14  QDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGT 73
            D   F+    +     V+  ++ P   + PA+ LF+  +F+ ++RALRPGG+VC+QA +
Sbjct: 141 GDGVAFLKNAAEGSYDAVIVDSSDP---IGPAKELFEKPFFQSVARALRPGGVVCTQAES 197

Query: 74  LWYSLDCVGNTLQHCASVFPR-VAYGATCVPTYPSGQIGFVLGS 116
           LW  +D + + + +C  +F   V Y  T VPTYPSG IGF+L S
Sbjct: 198 LWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCS 241

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 276

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 52.5 bits (125), Expect = 9e-10
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 42  VCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAYGATC 101
           V PA+ LF   ++  +  AL   GI  +QAG+++   D + +  +    VF RV Y +  
Sbjct: 161 VGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFP 220

Query: 102 VPTYPSGQIGFVLGS 116
           V  Y S    F++G 
Sbjct: 221 VIGYASP-WAFLVGV 234

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.98
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.97
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	99.97
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.97
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	99.96
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.96
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.95
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.17
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.03
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.0
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.9
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.9
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.86
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.86
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.83
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	97.82
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.73
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.7
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	97.7
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.69
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.45
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.29
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.08
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.04
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.04
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.93
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.87
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.69
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	96.65
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	96.58
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	96.48
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	96.39
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.39
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.31
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	96.28
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.15
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	96.15
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	96.12
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	95.95
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	95.89
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	95.87
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	95.78
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	95.77
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	95.72
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	95.7
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	95.69
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	95.67
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	95.6
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	95.51
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	95.49
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	95.48
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	95.41
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	95.32
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	95.3
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	95.11
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	95.1
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	95.04
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	95.01
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	95.0
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	94.93
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	94.92
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	94.58
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	94.46
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	94.39
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	94.25
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	94.16
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	93.98
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	93.97
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	93.94
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	93.8
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	93.25
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	93.08
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	92.94
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	92.51
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	91.95
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	91.95
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	91.59
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	90.86
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	90.29
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	89.84
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	89.35
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	89.04
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	88.33
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	86.8
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	85.66
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	85.21
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	85.09
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	84.69
d1yioa2	128	Response regulatory protein StyR, N-terminal domai	82.69
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	82.65
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	82.59
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	81.4
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	81.38
d1a04a2	138	Nitrate/nitrite response regulator (NarL), receive	80.46
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	80.11

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.98  E-value=2.1e-32  Score=208.05  Aligned_cols=115  Identities=23%  Similarity=0.440  Sum_probs=109.5

Q ss_pred             CCCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHH
Q psy4593           2 RSYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCV   81 (132)
Q Consensus         2 ~~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~   81 (132)
                      .+++|||++++++||++||++ ++++||+||+|++||   .+++..|||.|||+.|+++|+|||++++|+++++.+.+.+
T Consensus       124 ~~~~d~r~~i~~~D~~~~l~~-~~~~yDvIi~D~~~p---~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~  199 (274)
T d1iy9a_         124 GKLDDPRVDVQVDDGFMHIAK-SENQYDVIMVDSTEP---VGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELI  199 (274)
T ss_dssp             TTTTSTTEEEEESCSHHHHHT-CCSCEEEEEESCSSC---CSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHH
T ss_pred             ccccCCCeEEEechHHHHHhh-cCCCCCEEEEcCCCC---CCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHH
Confidence            368999999999999999999 788999999999999   6888899999999999999999999999999999899999


Q ss_pred             HHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          82 GNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        82 ~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      ..+.++++++|++|..|.+.+|+|++|.|+|++||+..+
T Consensus       200 ~~i~~tl~~~F~~v~~y~~~vPsy~~g~w~f~~aS~~~~  238 (274)
T d1iy9a_         200 TNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKKYD  238 (274)
T ss_dssp             HHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESSCC
T ss_pred             HHHHHhhhhhcCceEEEEEEeeecCCCceEEEEEcCCCC
Confidence            999999999999999999999999999999999999865

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=2.9e-32  Score=209.16  Aligned_cols=115  Identities=16%  Similarity=0.329  Sum_probs=101.1

Q ss_pred             CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593           3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG   82 (132)
Q Consensus         3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~   82 (132)
                      +++|||++++++||++||++ .+++||+||+|++||.  .+++..|||.|||+.|+++|+|||++++|+++++.+.+.+.
T Consensus       139 ~~~d~rv~v~~~Da~~~l~~-~~~~yDvIi~D~~dp~--~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~  215 (295)
T d1inla_         139 GFDDPRAEIVIANGAEYVRK-FKNEFDVIIIDSTDPT--AGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFK  215 (295)
T ss_dssp             GGGCTTEEEEESCHHHHGGG-CSSCEEEEEEEC------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHH
T ss_pred             cccCCCcEEEhhhHHHHHhc-CCCCCCEEEEcCCCCC--cCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHH
Confidence            57899999999999999999 8889999999999994  46778999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      .+.++++++|++|..|...+|+||+|.|+|++||+.++
T Consensus       216 ~i~~tl~~vF~~v~~y~~~vPtyp~G~w~f~~aSk~~~  253 (295)
T d1inla_         216 LAYRRISKVFPITRVYLGFMTTYPSGMWSYTFASKGID  253 (295)
T ss_dssp             HHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEEESSCC
T ss_pred             HHHHHHHhhcceeEEEEeeeceecCcccEEEEEeCCCC
Confidence            99999999999999999999999999999999999865

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=3.2e-32  Score=210.15  Aligned_cols=116  Identities=30%  Similarity=0.585  Sum_probs=98.1

Q ss_pred             CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593           3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG   82 (132)
Q Consensus         3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~   82 (132)
                      +++|||++++++||++||++ ++++||+||+|++||   .+++..|||.|||+.|+++|+|||++++|+++++.+.+.+.
T Consensus       156 ~~~dprv~i~i~Da~~~l~~-~~~~yDvII~D~~dp---~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~  231 (312)
T d2b2ca1         156 GFSHPKLDLFCGDGFEFLKN-HKNEFDVIITDSSDP---VGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIA  231 (312)
T ss_dssp             GGGCTTEEEECSCHHHHHHH-CTTCEEEEEECCC----------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHH
T ss_pred             ccCCCCeEEEEchHHHHHHh-CCCCCCEEEEcCCCC---CCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHH
Confidence            57899999999999999998 889999999999999   78899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCCcc
Q psy4593          83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQH  122 (132)
Q Consensus        83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~~~  122 (132)
                      .+.++++++|++|..|.+.+|+||+|.|+|++||+..++.
T Consensus       232 ~i~~~l~~vF~~v~~y~~~vPtyp~G~w~f~~aSk~~~~~  271 (312)
T d2b2ca1         232 HLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKNANRD  271 (312)
T ss_dssp             HHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESSTTCC
T ss_pred             HHHHHhhhccceEEEeeeccCCcCCccceeeEEECCCCcc
Confidence            9999999999999999999999999999999999986643

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.4e-32  Score=207.97  Aligned_cols=119  Identities=36%  Similarity=0.675  Sum_probs=101.5

Q ss_pred             CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593           3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG   82 (132)
Q Consensus         3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~   82 (132)
                      +++|||++++++||++||++ ++++||+||+|++||   .+++..|||.|||+.|+++|+|||++++|+++++.+.+.+.
T Consensus       128 ~~~d~rv~i~~~Da~~~l~~-~~~~yDvIi~D~~~p---~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~  203 (285)
T d2o07a1         128 GYSSSKLTLHVGDGFEFMKQ-NQDAFDVIITDSSDP---MGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIK  203 (285)
T ss_dssp             GGGCTTEEEEESCHHHHHHT-CSSCEEEEEEECC--------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHH
T ss_pred             ccCCCCceEEEccHHHHHhc-CCCCCCEEEEcCCCC---CCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHH
Confidence            57899999999999999998 788999999999999   68889999999999999999999999999999988999999


Q ss_pred             HHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCCccccC
Q psy4593          83 NTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLKQHANS  125 (132)
Q Consensus        83 ~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~~~~~~  125 (132)
                      .+.++++++|++|..|.+.+|+|++|.|+|++||+.++.+.+.
T Consensus       204 ~~~~tl~~~F~~v~~y~~~vP~~~~g~w~f~~aSk~p~~~~~~  246 (285)
T d2o07a1         204 EMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNPSTNFQE  246 (285)
T ss_dssp             HHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESSTTCCSSS
T ss_pred             HHHHHHHhcCCeeeEEeeeeeecCCCCeEEEEEECCccccccc
Confidence            9999999999999999999999999999999999987655443

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=2.9e-30  Score=197.62  Aligned_cols=115  Identities=36%  Similarity=0.667  Sum_probs=106.2

Q ss_pred             CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHH
Q psy4593           3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVG   82 (132)
Q Consensus         3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~   82 (132)
                      +++|||++++++||++|+++..+++||+||+|++||   .+++..|||.|||+.|+++|+|||++++|+++++.+.+.+.
T Consensus       130 ~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~dp---~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~  206 (290)
T d1xj5a_         130 GYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDP---IGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIE  206 (290)
T ss_dssp             GGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCT---TSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHH
T ss_pred             cccCCCcEEEEccHHHHHhhccccCccEEEEcCCCC---CCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHH
Confidence            578999999999999999874557999999999999   68889999999999999999999999999999998999999


Q ss_pred             HHHHHHHhhCCCceEeE-EeccCcCCCceeEEEeecCCC
Q psy4593          83 NTLQHCASVFPRVAYGA-TCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        83 ~~~~~l~~vF~~v~~~~-~~~p~~~~~~~~f~~as~~~~  120 (132)
                      .+.++++++|+++..|. +.+|+|++|.|+|++||+..+
T Consensus       207 ~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~as~~~~  245 (290)
T d1xj5a_         207 DIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTEGP  245 (290)
T ss_dssp             HHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEECSSS
T ss_pred             HHHhhhhhhcccceeEeeEeeeeecCCceEEEEEeCCCC
Confidence            99999999999998764 789999999999999998643

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.96  E-value=1.7e-29  Score=191.97  Aligned_cols=110  Identities=24%  Similarity=0.344  Sum_probs=98.7

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      .+|||++++++||++||++  .++||+||+|+++|   .+++..|||.|||+.|+++|+|||++++|+++++.+.+.+..
T Consensus       128 ~~d~rv~i~~~Da~~~l~~--~~~yDvIi~D~~~~---~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~  202 (276)
T d1mjfa_         128 GKHEKAKLTIGDGFEFIKN--NRGFDVIIADSTDP---VGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELIS  202 (276)
T ss_dssp             TCCSSEEEEESCHHHHHHH--CCCEEEEEEECCCC---C-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHH
T ss_pred             cCCCCceEEEChHHHHHhc--cCCCCEEEEeCCCC---CCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHH
Confidence            5799999999999999987  47899999999999   688899999999999999999999999999999988888999


Q ss_pred             HHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCC
Q psy4593          84 TLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLL  119 (132)
Q Consensus        84 ~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~  119 (132)
                      +.++++++|++|..|...+|+|++ .|+|++||+.+
T Consensus       203 ~~~tl~~~F~~v~~y~~~vP~y~~-~w~f~~as~~~  237 (276)
T d1mjfa_         203 AYKEMKKVFDRVYYYSFPVIGYAS-PWAFLVGVKGD  237 (276)
T ss_dssp             HHHHHHHHCSEEEEEEECCTTSSS-SEEEEEEEESS
T ss_pred             HHHHHHhhCCeeEEEEecCcCCCC-ceEEEEEeCCC
Confidence            999999999999999999999976 59999999875

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=3.1e-29  Score=193.53  Aligned_cols=116  Identities=17%  Similarity=0.325  Sum_probs=102.0

Q ss_pred             CCCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCC-hHHH
Q psy4593           3 SYRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYS-LDCV   81 (132)
Q Consensus         3 ~~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~-~~~~   81 (132)
                      +++|||++++++||++||++ .+++||+||+|++||.....++..|||.|||+.|+++|+|||++++|++++... .+..
T Consensus       128 ~~~d~rv~i~~~Da~~~l~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~  206 (312)
T d1uira_         128 AFDDPRAVLVIDDARAYLER-TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVH  206 (312)
T ss_dssp             GGGCTTEEEEESCHHHHHHH-CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHH
T ss_pred             ccCCCceEEEEchHHHHhhh-cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHH
Confidence            57899999999999999998 788999999999998433356778999999999999999999999998877654 3456


Q ss_pred             HHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecCCC
Q psy4593          82 GNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQLLK  120 (132)
Q Consensus        82 ~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~~~  120 (132)
                      ..+.++++++|++|..|.+.+|+|++ .|+|++||+..+
T Consensus       207 ~~i~~tl~~~F~~V~~y~~~vPs~~~-~w~f~~aS~~~~  244 (312)
T d1uira_         207 PVVHRTVREAFRYVRSYKNHIPGFFL-NFGFLLASDAFD  244 (312)
T ss_dssp             HHHHHHHHTTCSEEEEEEEEEGGGTE-EEEEEEEESSSC
T ss_pred             HHHHHHHHHhCceEEEEEeeeCCcCC-CCEeEEEeCCCC
Confidence            77889999999999999999999976 699999999865

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.17  E-value=5.1e-06  Score=62.54  Aligned_cols=79  Identities=6%  Similarity=0.048  Sum_probs=53.5

Q ss_pred             CCCCCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCccccc-----HHHHHHHHHhcCCCcEEEEecCCCCC
Q psy4593           4 YRGYPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQ-----ASYFELMSRALRPGGIVCSQAGTLWY   76 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t-----~eF~~~~~~~L~p~Gil~~~~~~~~~   76 (132)
                      ++..+++++.+|+.+||+..  ..++||+||+|.+.-.  .. ...+.+     .+.++.+.+.|+|||+++.-++++..
T Consensus       192 l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~--~~-~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~  268 (317)
T d2b78a2         192 LDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFA--RN-KKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM  268 (317)
T ss_dssp             CCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC--------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred             ccCcceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhc--cc-hhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC
Confidence            45578999999999998652  4578999999975310  11 112222     35677788899999999987666666


Q ss_pred             ChHHHHHHH
Q psy4593          77 SLDCVGNTL   85 (132)
Q Consensus        77 ~~~~~~~~~   85 (132)
                      +.+.+..++
T Consensus       269 ~~~~f~~~v  277 (317)
T d2b78a2         269 TVSQFKKQI  277 (317)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            655444433

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.03  E-value=6.5e-06  Score=58.25  Aligned_cols=82  Identities=10%  Similarity=0.029  Sum_probs=60.9

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHH
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT   84 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~   84 (132)
                      -.+++++.+||...+....+..+|.|++-..+||.-. .....|++.+|++.+++.|+|||++.+.+.    +......+
T Consensus        78 l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD----~~~y~~~~  153 (204)
T d2fcaa1          78 AQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD----NRGLFEYS  153 (204)
T ss_dssp             CSSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES----CHHHHHHH
T ss_pred             ccCchhcccchhhhhcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEEC----ChHHHHHH
Confidence            3589999999987765446788999999988986211 233579999999999999999999988542    23444555


Q ss_pred             HHHHHhh
Q psy4593          85 LQHCASV   91 (132)
Q Consensus        85 ~~~l~~v   91 (132)
                      ...+.+.
T Consensus       154 ~~~~~~~  160 (204)
T d2fcaa1         154 LKSFSEY  160 (204)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHC
Confidence            5565553

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.00  E-value=9.6e-06  Score=60.96  Aligned_cols=92  Identities=10%  Similarity=0.089  Sum_probs=57.4

Q ss_pred             CCCCCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCccc-----ccHHHHHHHHHhcCCCcE-EEEecCCCC
Q psy4593           4 YRGYPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESL-----FQASYFELMSRALRPGGI-VCSQAGTLW   75 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L-----~t~eF~~~~~~~L~p~Gi-l~~~~~~~~   75 (132)
                      +++.+++++.+|+.+||++.  ..++||+||+|.+.-  +.+.....     +-....+.|++.|+|+|. ++.++.+..
T Consensus       179 ~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f--~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~  256 (309)
T d2igta1         179 LEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKF--GRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIR  256 (309)
T ss_dssp             CTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSE--EECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTT
T ss_pred             ccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcc--cccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence            55678999999999999762  357899999997531  12222222     223455778899999996 444555555


Q ss_pred             CChHHHHHHHHH-HHhhCCCceE
Q psy4593          76 YSLDCVGNTLQH-CASVFPRVAY   97 (132)
Q Consensus        76 ~~~~~~~~~~~~-l~~vF~~v~~   97 (132)
                      .....+..+++. ++..-..+..
T Consensus       257 ~s~~~~~~~~~~~~~~ag~~v~~  279 (309)
T d2igta1         257 ASFYSMHELMRETMRGAGGVVAS  279 (309)
T ss_dssp             SCHHHHHHHHHHHTTTSCSEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCccee
Confidence            555555544443 3333444443

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=4.4e-06  Score=59.58  Aligned_cols=61  Identities=11%  Similarity=-0.020  Sum_probs=47.9

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcc-cccHHHHHHHHHhcCCCcEEEE
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAES-LFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~-L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ..+++++..|+........+.+||.|+.|....   .....+ ....+|++.++++|+|||+++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~---~~~~~~~~~~~~~~~~~~r~LkpGG~~~~  161 (229)
T d1zx0a1         100 THKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL---SEETWHTHQFNFIKNHAFRLLKPGGVLTY  161 (229)
T ss_dssp             SSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC---BGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             ccccccccccccccccccccccccceeeccccc---ccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence            456788889999988776678999999998765   333333 3456788999999999999986

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.90  E-value=1.2e-05  Score=60.37  Aligned_cols=87  Identities=10%  Similarity=0.041  Sum_probs=56.4

Q ss_pred             CcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCccccc-----HHHHHHHHHhcCCCcEEEEecCCCCCChHH
Q psy4593           8 PVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQ-----ASYFELMSRALRPGGIVCSQAGTLWYSLDC   80 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t-----~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~   80 (132)
                      +++++.+|+.++++..  ..++||+||+|.+.-.  .+. ..+.+     .+..+.+.+.|+|||+++.-++++....+.
T Consensus       194 ~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~--~~~-~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~  270 (318)
T d1wxxa2         194 NVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFA--KGK-KDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPL  270 (318)
T ss_dssp             TEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSC--CST-TSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHH
T ss_pred             CcceeeccHHHHhhhhHhhhcCCCEEEEcCCccc--cch-HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHH
Confidence            5889999999986542  4579999999985321  121 12221     356778899999999999876666566554


Q ss_pred             HHHHH-HHHHhhCCCceE
Q psy4593          81 VGNTL-QHCASVFPRVAY   97 (132)
Q Consensus        81 ~~~~~-~~l~~vF~~v~~   97 (132)
                      +..++ +.+...=..+.+
T Consensus       271 f~~~v~~a~~~a~~~~~~  288 (318)
T d1wxxa2         271 FYAMVAEAAQDAHRLLRV  288 (318)
T ss_dssp             HHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHcCCCEEE
Confidence            44443 334444344443

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.86  E-value=3.7e-06  Score=61.43  Aligned_cols=77  Identities=17%  Similarity=0.233  Sum_probs=59.3

Q ss_pred             CCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHH
Q psy4593           5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNT   84 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~   84 (132)
                      ...+++++.+|..+.+.   ++.||.|++|+.+|+            ++++.+++.|+|||+++.++.+    .+....+
T Consensus       135 ~~~nv~~~~~Di~~~~~---~~~fD~V~ld~p~p~------------~~l~~~~~~LKpGG~lv~~~P~----i~Qv~~~  195 (250)
T d1yb2a1         135 DIGNVRTSRSDIADFIS---DQMYDAVIADIPDPW------------NHVQKIASMMKPGSVATFYLPN----FDQSEKT  195 (250)
T ss_dssp             CCTTEEEECSCTTTCCC---SCCEEEEEECCSCGG------------GSHHHHHHTEEEEEEEEEEESS----HHHHHHH
T ss_pred             CCCceEEEEeeeecccc---cceeeeeeecCCchH------------HHHHHHHHhcCCCceEEEEeCC----cChHHHH
Confidence            35789999999877643   468999999998883            4589999999999999987533    2457778


Q ss_pred             HHHHHhh-CCCceEeEE
Q psy4593          85 LQHCASV-FPRVAYGAT  100 (132)
Q Consensus        85 ~~~l~~v-F~~v~~~~~  100 (132)
                      .+.+++. |.++.....
T Consensus       196 ~~~l~~~gf~~i~~~E~  212 (250)
T d1yb2a1         196 VLSLSASGMHHLETVEL  212 (250)
T ss_dssp             HHHSGGGTEEEEEEEEE
T ss_pred             HHHHHHCCCceeEEEEE
Confidence            8888866 776665544

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.86  E-value=5.8e-06  Score=60.86  Aligned_cols=76  Identities=13%  Similarity=0.074  Sum_probs=58.2

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL   85 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~   85 (132)
                      .++++++++|+.+.  ...++.||.|++|+.+||            +++..+++.|+|||.+++.+.+    .+...+++
T Consensus       149 ~~nv~~~~~d~~~~--~~~~~~fDaV~ldlp~P~------------~~l~~~~~~LkpGG~lv~~~P~----i~Qv~~~~  210 (264)
T d1i9ga_         149 PDNWRLVVSDLADS--ELPDGSVDRAVLDMLAPW------------EVLDAVSRLLVAGGVLMVYVAT----VTQLSRIV  210 (264)
T ss_dssp             CTTEEEECSCGGGC--CCCTTCEEEEEEESSCGG------------GGHHHHHHHEEEEEEEEEEESS----HHHHHHHH
T ss_pred             CceEEEEecccccc--cccCCCcceEEEecCCHH------------HHHHHHHhccCCCCEEEEEeCc----cChHHHHH
Confidence            36889999998763  224688999999999984            5589999999999999987533    34677888


Q ss_pred             HHHHh--hCCCceEeE
Q psy4593          86 QHCAS--VFPRVAYGA   99 (132)
Q Consensus        86 ~~l~~--vF~~v~~~~   99 (132)
                      +.+++  .|-++....
T Consensus       211 ~~l~~~~~f~~i~~~E  226 (264)
T d1i9ga_         211 EALRAKQCWTEPRAWE  226 (264)
T ss_dssp             HHHHHHSSBCCCEEEC
T ss_pred             HHHHHcCCeecceEEE
Confidence            88873  377766543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.83  E-value=9.8e-06  Score=60.91  Aligned_cols=73  Identities=12%  Similarity=-0.022  Sum_probs=49.5

Q ss_pred             CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccc-----cHHHHHHHHHhcCCCcEEEEecCCCCCChH
Q psy4593           7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLF-----QASYFELMSRALRPGGIVCSQAGTLWYSLD   79 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~-----t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~   79 (132)
                      ++++++.+|+.+++...  ..++||+||+|.+.-   ........     -.++++.+.+.|+|||+++.-+++.....+
T Consensus       195 ~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~---~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~  271 (324)
T d2as0a2         195 DRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAF---VQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQ  271 (324)
T ss_dssp             GGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCS---CSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHH
T ss_pred             ccceeeechhhhhhHHHHhccCCCCchhcCCccc---cCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHH
Confidence            47899999999987542  457999999998532   11111111     144677888999999999886655555544


Q ss_pred             HHH
Q psy4593          80 CVG   82 (132)
Q Consensus        80 ~~~   82 (132)
                      .+.
T Consensus       272 ~f~  274 (324)
T d2as0a2         272 MFK  274 (324)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.82  E-value=3.6e-05  Score=53.23  Aligned_cols=82  Identities=11%  Similarity=0.082  Sum_probs=56.9

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHH
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGN   83 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~   83 (132)
                      +.+.+++++.+|..+.+.   +++||+|+.+..     .. ...-...++++.+++.|+|||++.+-.    ........
T Consensus        99 l~~~~i~~~~~d~~~~~~---~~~fD~Ii~~~p-----~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~----~~~~~~~~  165 (194)
T d1dusa_          99 LDNYDIRVVHSDLYENVK---DRKYNKIITNPP-----IR-AGKEVLHRIIEEGKELLKDNGEIWVVI----QTKQGAKS  165 (194)
T ss_dssp             CTTSCEEEEECSTTTTCT---TSCEEEEEECCC-----ST-TCHHHHHHHHHHHHHHEEEEEEEEEEE----ESTHHHHH
T ss_pred             CccceEEEEEcchhhhhc---cCCceEEEEccc-----EE-ecchhhhhHHHHHHHhcCcCcEEEEEE----eCcCCHHH
Confidence            467789999999877543   478999999753     11 112234678999999999999876521    11123456


Q ss_pred             HHHHHHhhCCCceEe
Q psy4593          84 TLQHCASVFPRVAYG   98 (132)
Q Consensus        84 ~~~~l~~vF~~v~~~   98 (132)
                      +.+.+++.|.++...
T Consensus       166 ~~~~l~~~f~~~~~~  180 (194)
T d1dusa_         166 LAKYMKDVFGNVETV  180 (194)
T ss_dssp             HHHHHHHHHSCCEEE
T ss_pred             HHHHHHHhCCcEEEE
Confidence            667788889887753

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.73  E-value=5.7e-05  Score=53.21  Aligned_cols=81  Identities=10%  Similarity=0.019  Sum_probs=60.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCC-CCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVV-CPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL   85 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~   85 (132)
                      ++++++.+||...+....+.++|.|++-.+|||.-. -.-..+++.+|++.++++|+|||.+.+.+.+    ......+.
T Consensus        81 ~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~----~~Y~~~~l  156 (204)
T d1yzha1          81 PNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN----RGLFEYSL  156 (204)
T ss_dssp             SSEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC----HHHHHHHH
T ss_pred             ccceeeecCHHHHhhhccCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECC----ccHHHHHH
Confidence            689999999998765546789999999999997211 1234789999999999999999999875433    33445555


Q ss_pred             HHHHhh
Q psy4593          86 QHCASV   91 (132)
Q Consensus        86 ~~l~~v   91 (132)
                      ..+.+.
T Consensus       157 e~~~~~  162 (204)
T d1yzha1         157 VSFSQY  162 (204)
T ss_dssp             HHHHHH
T ss_pred             HHHHHC
Confidence            555554

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=6.6e-06  Score=62.16  Aligned_cols=70  Identities=13%  Similarity=0.047  Sum_probs=50.1

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL   85 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~   85 (132)
                      ..++.++.+|...+.....+..||.|++|+.+||            +.+..+++.|+|||++++.+.+    ...+..++
T Consensus       159 ~~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~P~------------~~l~~~~~~LKpGG~lv~~~P~----i~Qv~~~~  222 (324)
T d2b25a1         159 PDNVDFIHKDISGATEDIKSLTFDAVALDMLNPH------------VTLPVFYPHLKHGGVCAVYVVN----ITQVIELL  222 (324)
T ss_dssp             CCCEEEEESCTTCCC-------EEEEEECSSSTT------------TTHHHHGGGEEEEEEEEEEESS----HHHHHHHH
T ss_pred             ccceeEEecchhhcccccCCCCcceEeecCcCHH------------HHHHHHHHhccCCCEEEEEeCC----HHHHHHHH
Confidence            3678899999776654434568999999998885            2488999999999999987533    24577788


Q ss_pred             HHHHhh
Q psy4593          86 QHCASV   91 (132)
Q Consensus        86 ~~l~~v   91 (132)
                      +.|++.
T Consensus       223 ~~l~~~  228 (324)
T d2b25a1         223 DGIRTC  228 (324)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            888754

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=5.6e-05  Score=53.86  Aligned_cols=55  Identities=18%  Similarity=0.211  Sum_probs=44.3

Q ss_pred             CCCcEEEEccHHHHhcCC----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGP----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ..+++++++||.+.+.+.    ....||+|++|....          ...++|+.+.+.|+|||+++.-
T Consensus       110 ~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~dk~----------~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         110 EHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKE----------NCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             TTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCST----------THHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceEEEEEeehhhcchhhhhhcccCCccEEEEeCCHH----------HHHHHHHHHHHHhcCCcEEEEe
Confidence            468999999999987542    357899999997432          1377899999999999999973

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.69  E-value=1.7e-05  Score=57.06  Aligned_cols=55  Identities=7%  Similarity=0.076  Sum_probs=45.4

Q ss_pred             CCCcEEEEccHHHHhcCC-----CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGP-----VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~-----~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +.+++++++|+.+.|.+.     ..++||.|++|+.-.          ...++|+.+.+.|+|||+++.-
T Consensus       110 ~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa~k~----------~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         110 DHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD----------NYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             GGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEECSCST----------THHHHHHHHHHHBCTTCCEEEE
T ss_pred             ccceeeeehHHHHHHHHHHhccccCCceeEEEeccchh----------hhHHHHHHHHhhcCCCcEEEEc
Confidence            458999999999998763     246899999997533          1478999999999999999873

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.45  E-value=0.00044  Score=47.23  Aligned_cols=74  Identities=16%  Similarity=0.162  Sum_probs=53.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      +|++++.+|+.+.+..  ...||+|+++....          ...++++.+++.|+|||.+++....    .+....+.+
T Consensus        82 ~~v~~~~gda~~~~~~--~~~~D~v~~~~~~~----------~~~~~~~~~~~~LkpgG~lvi~~~~----~e~~~~~~~  145 (186)
T d1l3ia_          82 DNVTLMEGDAPEALCK--IPDIDIAVVGGSGG----------ELQEILRIIKDKLKPGGRIIVTAIL----LETKFEAME  145 (186)
T ss_dssp             TTEEEEESCHHHHHTT--SCCEEEEEESCCTT----------CHHHHHHHHHHTEEEEEEEEEEECB----HHHHHHHHH
T ss_pred             cceEEEECchhhcccc--cCCcCEEEEeCccc----------cchHHHHHHHHHhCcCCEEEEEeec----cccHHHHHH
Confidence            6899999999998755  57899999885322          1378999999999999999886422    233455566


Q ss_pred             HHHhhCCCce
Q psy4593          87 HCASVFPRVA   96 (132)
Q Consensus        87 ~l~~vF~~v~   96 (132)
                      .+++..-.+.
T Consensus       146 ~l~~~~~~~~  155 (186)
T d1l3ia_         146 CLRDLGFDVN  155 (186)
T ss_dssp             HHHHTTCCCE
T ss_pred             HHHHcCCCeE
Confidence            6666543333

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.29  E-value=4.5e-05  Score=55.88  Aligned_cols=74  Identities=19%  Similarity=0.198  Sum_probs=55.2

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      .++.+...|....+   ....+|.|++|+.+|+            ++++.+++.|+|||.+++.+.+    .+.+.++++
T Consensus       155 ~~v~~~~~d~~~~~---~~~~~D~V~~d~p~p~------------~~l~~~~~~LKpGG~lv~~~P~----~~Qv~~~~~  215 (266)
T d1o54a_         155 ERVTIKVRDISEGF---DEKDVDALFLDVPDPW------------NYIDKCWEALKGGGRFATVCPT----TNQVQETLK  215 (266)
T ss_dssp             GGEEEECCCGGGCC---SCCSEEEEEECCSCGG------------GTHHHHHHHEEEEEEEEEEESS----HHHHHHHHH
T ss_pred             cCcEEEeccccccc---cccceeeeEecCCCHH------------HHHHHHHhhcCCCCEEEEEeCc----ccHHHHHHH
Confidence            56777888854432   3467999999998883            5689999999999999987533    345677888


Q ss_pred             HHHhh-CCCceEeE
Q psy4593          87 HCASV-FPRVAYGA   99 (132)
Q Consensus        87 ~l~~v-F~~v~~~~   99 (132)
                      .|++. |-++.++.
T Consensus       216 ~l~~~gF~~i~~~E  229 (266)
T d1o54a_         216 KLQELPFIRIEVWE  229 (266)
T ss_dssp             HHHHSSEEEEEEEC
T ss_pred             HHHHCCceeEEEEE
Confidence            88865 76666544

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.08  E-value=9.3e-05  Score=49.42  Aligned_cols=56  Identities=9%  Similarity=0.042  Sum_probs=40.1

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHH--HhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMS--RALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~--~~L~p~Gil~~~   70 (132)
                      ..+++++.+|+.++++. ..++||+|++|++     ..   .-.-.+.++.+.  +.|+|+|++++-
T Consensus        63 ~~~~~ii~~D~~~~l~~-~~~~fDiIf~DPP-----y~---~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          63 ENRFTLLKMEAERAIDC-LTGRFDLVFLDPP-----YA---KETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             GGGEEEECSCHHHHHHH-BCSCEEEEEECCS-----SH---HHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ccchhhhcccccccccc-cccccceeEechh-----hc---cchHHHHHHHHHHCCCcCCCeEEEEE
Confidence            35789999999999987 6789999999963     11   111233445443  469999999874

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.04  E-value=0.00069  Score=48.85  Aligned_cols=71  Identities=14%  Similarity=0.119  Sum_probs=50.3

Q ss_pred             CCCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCC-Ccccc-------cHHHHHHHHHhcCCCcEEEEecCCCC
Q psy4593           4 YRGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCP-AESLF-------QASYFELMSRALRPGGIVCSQAGTLW   75 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~-~~~L~-------t~eF~~~~~~~L~p~Gil~~~~~~~~   75 (132)
                      |.+..=+|+++|.++.|+...+++.|+|+.|.+=.. +... ....-       -.+.++.+++.|+|+|.+.++....+
T Consensus         8 ~~~~~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~-~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~~   86 (320)
T d1booa_           8 YTTSNGSMYIGDSLELLESFPEESISLVMTSPPFAL-QRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAY   86 (320)
T ss_dssp             EECSSEEEEESCHHHHGGGSCSSCEEEEEECCCCSS-SCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCE
T ss_pred             ccCCCCEEEehhHHHHHhhCccCCCCEEEECCCCcC-CCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccchh
Confidence            444555899999999999988899999999975210 0000 01111       24568999999999999999865543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00054  Score=46.95  Aligned_cols=56  Identities=9%  Similarity=0.083  Sum_probs=42.4

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH--hcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR--ALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~--~L~p~Gil~~~   70 (132)
                      -.+.+++.+|+.+|++. ...+||+|++|.+=     .  ..+ -.+.+..+.+  .|+++|++++-
T Consensus        91 ~~~~~ii~~d~~~~l~~-~~~~fDlIf~DPPY-----~--~~~-~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1          91 AGNARVVNSNAMSFLAQ-KGTPHNIVFVDPPF-----R--RGL-LEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             CCSEEEECSCHHHHHSS-CCCCEEEEEECCSS-----S--TTT-HHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ccceeeeeecccccccc-cccccCEEEEcCcc-----c--cch-HHHHHHHHHHCCCCCCCeEEEEE
Confidence            45689999999999988 77899999999731     1  112 3456666665  59999999974

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.93  E-value=0.00037  Score=48.98  Aligned_cols=59  Identities=17%  Similarity=0.224  Sum_probs=43.4

Q ss_pred             EEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC--cc--------cccHHHHHHHHHhcCCCcEEEEec
Q psy4593          10 LSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA--ES--------LFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus        10 ~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~--~~--------L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      +|+.+|.++.|++..+++.|+|+.|.+=.   .+..  ..        -+..++++.+++.|+|+|.+..+.
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~---~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~   74 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYN---LSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCS---SCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCC---CCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence            58999999999987788999999997521   1100  01        123457789999999999987653

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.87  E-value=0.0011  Score=46.99  Aligned_cols=64  Identities=14%  Similarity=0.203  Sum_probs=45.9

Q ss_pred             EEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCC---CCcc--cccHHHHHHHHHhcCCCcEEEEecCCC
Q psy4593          10 LSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVC---PAES--LFQASYFELMSRALRPGGIVCSQAGTL   74 (132)
Q Consensus        10 ~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~---~~~~--L~t~eF~~~~~~~L~p~Gil~~~~~~~   74 (132)
                      .++++|.++.|++..+++.|+|+.|.+=.. +..   -...  -+..++++.+++.|+|+|.++++++..
T Consensus         6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~-~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~   74 (279)
T d1eg2a_           6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNI-MLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ   74 (279)
T ss_dssp             EEEECCHHHHHHTSCTTCEEEEEECCCSBC-CGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred             eEEechHHHHHhhCcCCCccEEEECCCCCC-CcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCcc
Confidence            467799999999988899999999985210 010   0011  124667788999999999999986443

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.69  E-value=0.00073  Score=51.58  Aligned_cols=52  Identities=12%  Similarity=0.234  Sum_probs=44.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .++.+...|+..++.+ ..++||+|.+|.|-.      +     .+|++.+.++++.||++++-
T Consensus       110 ~~~~~~~~Da~~~~~~-~~~~fDvIDiDPfGs------~-----~pfldsAi~a~~~~Gll~vT  161 (375)
T d2dula1         110 KTIVINHDDANRLMAE-RHRYFHFIDLDPFGS------P-----MEFLDTALRSAKRRGILGVT  161 (375)
T ss_dssp             SEEEEEESCHHHHHHH-STTCEEEEEECCSSC------C-----HHHHHHHHHHEEEEEEEEEE
T ss_pred             ceeEeehhhhhhhhHh-hcCcCCcccCCCCCC------c-----HHHHHHHHHHhccCCEEEEE
Confidence            4578899999999988 678999999998632      2     67999999999999999864

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.65  E-value=0.00027  Score=49.89  Aligned_cols=58  Identities=21%  Similarity=0.283  Sum_probs=39.4

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEE--cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVS--GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~--D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ..+++++.+|+..+  . .+++||+|++  ++...     ....---..+++.++++|+|||++++..
T Consensus        83 ~~~v~~~~~d~~~~--~-~~~~fD~i~~~~~~~~~-----~~~~~~~~~~l~~~~~~LkpgG~~i~~~  142 (246)
T d1y8ca_          83 GLKPRLACQDISNL--N-INRKFDLITCCLDSTNY-----IIDSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             TCCCEEECCCGGGC--C-CSCCEEEEEECTTGGGG-----CCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             Cccceeeccchhhh--c-ccccccccceeeeeeec-----cCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence            35789999998875  2 3468999986  32211     1101112458999999999999999753

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00055  Score=48.33  Aligned_cols=54  Identities=24%  Similarity=0.388  Sum_probs=40.8

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++|++++.+|+.++.   .+++||+|++ .+...     .+.   -..+++.+++.|+|||.+++.
T Consensus        82 ~~~v~~~~~d~~~~~---~~~~fD~v~~~~~~~~-----~~d---~~~~l~~~~r~LkPGG~l~i~  136 (245)
T d1nkva_          82 SERVHFIHNDAAGYV---ANEKCDVAACVGATWI-----AGG---FAGAEELLAQSLKPGGIMLIG  136 (245)
T ss_dssp             TTTEEEEESCCTTCC---CSSCEEEEEEESCGGG-----TSS---SHHHHHHHTTSEEEEEEEEEE
T ss_pred             cccchhhhhHHhhcc---ccCceeEEEEEehhhc-----cCC---HHHHHHHHHHHcCcCcEEEEE
Confidence            468999999988853   3578999984 44322     111   278999999999999999875

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.48  E-value=0.0019  Score=46.63  Aligned_cols=50  Identities=14%  Similarity=0.161  Sum_probs=40.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++++.+|++++..+   ..||.|+.+.+-           .+.+|+..+.+.|++||++...
T Consensus       157 ~~v~~~~~D~~~~~~~---~~~D~Ii~~~p~-----------~~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         157 DRMSAYNMDNRDFPGE---NIADRILMGYVV-----------RTHEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             TTEEEECSCTTTCCCC---SCEEEEEECCCS-----------SGGGGHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEEEcchHHhccC---CCCCEEEECCCC-----------chHHHHHHHHhhcCCCCEEEEE
Confidence            5799999999987644   689999987531           2467899999999999998654

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.39  E-value=0.0012  Score=45.22  Aligned_cols=56  Identities=14%  Similarity=0.091  Sum_probs=40.2

Q ss_pred             CCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH--hcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR--ALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~--~L~p~Gil~~~   70 (132)
                      .+++++.+|+.++++..  ...+||+|++|.+     ..  ...+ .+.++.+.+  .|+++|++++.
T Consensus        91 ~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPP-----Y~--~~~~-~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1          91 EKFEVRKMDANRALEQFYEEKLQFDLVLLDPP-----YA--KQEI-VSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             GGEEEEESCHHHHHHHHHHTTCCEEEEEECCC-----GG--GCCH-HHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cccccccccchhhhhhhcccCCCcceEEechh-----hh--hhHH-HHHHHHHHHCCCCCCCEEEEEE
Confidence            47899999999998652  4568999999973     11  1222 445666544  59999999875

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.39  E-value=0.00099  Score=46.05  Aligned_cols=56  Identities=21%  Similarity=0.159  Sum_probs=39.8

Q ss_pred             CCCCcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ..++++++++|+.+ +.- .+++||+|++- +..-     .+.   -..+++.++++|+|||.+++.
T Consensus        61 ~~~~i~~~~~d~~~-l~~-~~~~fD~v~~~~~l~~-----~~d---~~~~l~~~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          61 GHQQVEYVQGDAEQ-MPF-TDERFHIVTCRIAAHH-----FPN---PASFVSEAYRVLKKGGQLLLV  117 (231)
T ss_dssp             TCCSEEEEECCC-C-CCS-CTTCEEEEEEESCGGG-----CSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccccccccccc-ccc-cccccccccccccccc-----cCC---HHHHHHHHHHhcCCCcEEEEE
Confidence            45789999999876 332 46899999854 3221     111   257899999999999988863

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.31  E-value=0.0012  Score=47.56  Aligned_cols=55  Identities=15%  Similarity=0.195  Sum_probs=40.2

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++++++.+|+.+. .- .+++||+|+. ++..-     .+.   -..+++.++++|+|||.+++.
T Consensus       116 ~~~v~~~~~d~~~l-~~-~~~sfD~V~~~~~l~h-----~~d---~~~~l~~~~~~LkpgG~l~~~  171 (282)
T d2o57a1         116 ADNITVKYGSFLEI-PC-EDNSYDFIWSQDAFLH-----SPD---KLKVFQECARVLKPRGVMAIT  171 (282)
T ss_dssp             TTTEEEEECCTTSC-SS-CTTCEEEEEEESCGGG-----CSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccccccccccc-cc-cccccchhhccchhhh-----ccC---HHHHHHHHHHhcCCCcEEEEE
Confidence            36899999998763 22 4689999985 44321     111   267899999999999998874

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.28  E-value=0.00084  Score=47.21  Aligned_cols=55  Identities=11%  Similarity=0.062  Sum_probs=40.2

Q ss_pred             CCcEEEEccHHHHhcCC----CCCeecEEEEcCCCCCCCCCCCcccccH-HHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGP----VKNMCGLVVSGAAGPGRVVCPAESLFQA-SYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~----~~~~yDvIi~D~~dp~~~~~~~~~L~t~-eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++++.+|+.+.|.+.    ....||+|++|..-.         .+.. ..+..+.+.|+|||+++.-
T Consensus       108 ~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~---------~~~~~~~l~~~~~lLkpGGvIv~D  167 (214)
T d2cl5a1         108 DKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD---------RYLPDTLLLEKCGLLRKGTVLLAD  167 (214)
T ss_dssp             GGEEEEESCHHHHGGGHHHHSCCCCEEEEEECSCGG---------GHHHHHHHHHHTTCEEEEEEEEES
T ss_pred             ccceeeeccccccccchhhcccccccceeeeccccc---------ccccHHHHHHHhCccCCCcEEEEe
Confidence            57999999999988663    236799999995321         2222 2355677889999999873

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.15  E-value=0.0016  Score=45.50  Aligned_cols=55  Identities=9%  Similarity=0.020  Sum_probs=39.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++.++.+|+.+ +.- .+++||+|++-..-.    -.+.   -.++++.++++|+|||.+++.
T Consensus        64 ~~~~~~~~d~~~-~~~-~~~~fD~v~~~~~l~----~~~d---~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          64 ENVRFQQGTAES-LPF-PDDSFDIITCRYAAH----HFSD---VRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             CSEEEEECBTTB-CCS-CTTCEEEEEEESCGG----GCSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccccccccc-ccc-cccccceeeeeceee----cccC---HHHHHHHHHHeeCCCcEEEEE
Confidence            578999999866 332 568999999632211    1111   268999999999999988763

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.15  E-value=0.0025  Score=44.48  Aligned_cols=56  Identities=20%  Similarity=0.199  Sum_probs=39.3

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEc--CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSG--AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D--~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +.+++++.+|+..+  . .+++||+|++=  +..-     .... -...+++.++++|+|||++++.
T Consensus        87 ~~~i~~~~~d~~~l--~-~~~~fD~I~~~~~~~~~-----~~~~-~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1          87 NLKIEFLQGDVLEI--A-FKNEFDAVTMFFSTIMY-----FDEE-DLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             TCCCEEEESCGGGC--C-CCSCEEEEEECSSGGGG-----SCHH-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccchheehhhhhc--c-cccccchHhhhhhhhhc-----CChH-HHHHHHHHHHHHcCCCcEEEEE
Confidence            45799999998775  2 34689999873  2111     1111 1257999999999999999874

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.12  E-value=0.0052  Score=45.01  Aligned_cols=58  Identities=10%  Similarity=-0.017  Sum_probs=40.3

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEE-EcCCCCCCCCCCCc----ccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVV-SGAAGPGRVVCPAE----SLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi-~D~~dp~~~~~~~~----~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ..++++...|..    . .+++||.|+ +..+..   ++...    .=.=+.||+.|++.|+|||.++++.
T Consensus       110 ~~~v~~~~~d~~----~-~~~~fD~i~sie~~eH---~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         110 PRRKEVRIQGWE----E-FDEPVDRIVSLGAFEH---FADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             SSCEEEEECCGG----G-CCCCCSEEEEESCGGG---TTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             chhhhhhhhccc----c-cccccceEeechhHHh---cchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            357788888853    2 357899999 465543   22211    1122689999999999999999875

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=95.95  E-value=0.0058  Score=41.52  Aligned_cols=58  Identities=16%  Similarity=0.205  Sum_probs=40.9

Q ss_pred             CCCCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH--hcCCCcEEEEe
Q psy4593           5 RGYPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR--ALRPGGIVCSQ   70 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~--~L~p~Gil~~~   70 (132)
                      .+....++..|..++++.. ...+||+|++|.+=.       ..+ ..+.++.+.+  .|+++|++++-
T Consensus        92 ~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDPPY~-------~~~-~~~~l~~l~~~~~L~~~~liiiE  152 (183)
T d2ifta1          92 SSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFH-------FNL-AEQAISLLCENNWLKPNALIYVE  152 (183)
T ss_dssp             CTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSS-------SCH-HHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cccccccccccccccccccccCCcccEEEechhHh-------hhh-HHHHHHHHHHhCCcCCCcEEEEE
Confidence            3556788999999999863 345799999997421       123 3445565544  69999999974

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.89  E-value=0.0032  Score=42.89  Aligned_cols=57  Identities=16%  Similarity=0.084  Sum_probs=38.4

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +.+++.+.+|+.+. .- .+++||+|++ ++..-   . ++..  -..+++.+++.|+|||.+++.
T Consensus        83 ~~~~~~~~~d~~~l-~~-~~~~fD~I~~~~~l~~---~-~~~d--~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1          83 ESNVEFIVGDARKL-SF-EDKTFDYVIFIDSIVH---F-EPLE--LNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             TCCCEEEECCTTSC-CS-CTTCEEEEEEESCGGG---C-CHHH--HHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccccccccccc-cc-cCcCceEEEEecchhh---C-ChhH--HHHHHHHHHHHcCcCcEEEEE
Confidence            35677888888773 33 5688999885 33211   0 1111  245899999999999998864

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=95.87  E-value=0.0026  Score=45.42  Aligned_cols=53  Identities=19%  Similarity=0.101  Sum_probs=38.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCccccc---HHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQ---ASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t---~eF~~~~~~~L~p~Gil~~   69 (132)
                      ++++++++|..++--  .+++||+|++-..        ..++-.   .+|++.|++.|+|||.+++
T Consensus       140 ~~~~~~~~d~~~~~~--~~~~fD~I~~~~v--------l~hl~d~d~~~~l~~~~~~LkpgG~iii  195 (254)
T d1xtpa_         140 PVGKFILASMETATL--PPNTYDLIVIQWT--------AIYLTDADFVKFFKHCQQALTPNGYIFF  195 (254)
T ss_dssp             SEEEEEESCGGGCCC--CSSCEEEEEEESC--------GGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccceeEEcccccccc--CCCccceEEeecc--------ccccchhhhHHHHHHHHHhcCCCcEEEE
Confidence            557888999877532  3578999996432        112322   4789999999999999987

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0026  Score=44.85  Aligned_cols=51  Identities=22%  Similarity=0.214  Sum_probs=36.9

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG   72 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~   72 (132)
                      .+++++.+||..-...  ...||+|+++..-+    ..+         +.+.+.|+|||.+++..+
T Consensus       132 ~~~~~~~gD~~~~~~~--~~~fD~I~~~~~~~----~ip---------~~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         132 GRVQLVVGDGRMGYAE--EAPYDAIHVGAAAP----VVP---------QALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             SSEEEEESCGGGCCGG--GCCEEEEEECSBBS----SCC---------HHHHHTEEEEEEEEEEES
T ss_pred             cceEEEEeecccccch--hhhhhhhhhhcchh----hcC---------HHHHhhcCCCcEEEEEEc
Confidence            5778899999765433  46899999987543    122         346678999999998643

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.77  E-value=0.0062  Score=44.18  Aligned_cols=55  Identities=15%  Similarity=0.042  Sum_probs=38.4

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      +.++.+...|.++     .+++||.|++ +.+..   .+.   -.-..||+.+++.|+|||.++++.
T Consensus       101 ~~~~~~~~~d~~~-----~~~~fD~i~si~~~eh---~~~---~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         101 NRSRQVLLQGWED-----FAEPVDRIVSIEAFEH---FGH---ENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             SSCEEEEESCGGG-----CCCCCSEEEEESCGGG---TCG---GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccchhhhhhhhhh-----hccchhhhhHhhHHHH---hhh---hhHHHHHHHHHhccCCCceEEEEE
Confidence            3466777777543     3468999984 55432   111   123689999999999999999975

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=95.72  E-value=0.0032  Score=44.59  Aligned_cols=52  Identities=21%  Similarity=0.053  Sum_probs=37.1

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG   72 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~   72 (132)
                      ..+++++.+|+......  ...||+|++...-+    ..+         +.+.+.|+|||.+++..+
T Consensus       115 ~~nv~~~~~d~~~g~~~--~~pfD~Iiv~~a~~----~ip---------~~l~~qLk~GGrLV~pvg  166 (224)
T d1vbfa_         115 YNNIKLILGDGTLGYEE--EKPYDRVVVWATAP----TLL---------CKPYEQLKEGGIMILPIG  166 (224)
T ss_dssp             CSSEEEEESCGGGCCGG--GCCEEEEEESSBBS----SCC---------HHHHHTEEEEEEEEEEEC
T ss_pred             ccccccccCchhhcchh--hhhHHHHHhhcchh----hhh---------HHHHHhcCCCCEEEEEEc
Confidence            46899999999875443  46799999976433    222         234567999999998643

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.02  Score=41.49  Aligned_cols=84  Identities=17%  Similarity=0.144  Sum_probs=54.2

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCC---------CCCCCccccc--------HHHHHHHHHhcCCCcEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGR---------VVCPAESLFQ--------ASYFELMSRALRPGGIVC   68 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~---------~~~~~~~L~t--------~eF~~~~~~~L~p~Gil~   68 (132)
                      .|++++.+|..+.+..   .+||+|+.+.+= |..         ...|...|+.        ..+++.+.+.|+|+|.++
T Consensus       158 ~~v~~~~~d~~~~~~~---~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~  234 (274)
T d2b3ta1         158 KNIHILQSDWFSALAG---QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLL  234 (274)
T ss_dssp             CSEEEECCSTTGGGTT---CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred             ccceeeecccccccCC---CceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEE
Confidence            4789999997776543   689999998641 210         0133334444        347788899999999999


Q ss_pred             EecCCCCCChHHHHHHHHHHHhh-CCCceEe
Q psy4593          69 SQAGTLWYSLDCVGNTLQHCASV-FPRVAYG   98 (132)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~l~~v-F~~v~~~   98 (132)
                      +-.+.  .+.   ..+.+.+++. |..+.+.
T Consensus       235 lEig~--~q~---~~v~~~l~~~gf~~i~~~  260 (274)
T d2b3ta1         235 LEHGW--QQG---EAVRQAFILAGYHDVETC  260 (274)
T ss_dssp             EECCS--SCH---HHHHHHHHHTTCTTCCEE
T ss_pred             EEECc--hHH---HHHHHHHHHCCCCeEEEE
Confidence            85422  232   3444555544 8887764

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.69  E-value=0.0094  Score=43.43  Aligned_cols=55  Identities=15%  Similarity=0.088  Sum_probs=39.7

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEE-EcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVV-SGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi-~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      ..++++..+|.++     .+.+||.|+ +..+..   .+.   -.-..||+.|++.|+|||.++++.
T Consensus       111 ~~~v~~~~~d~~~-----~~~~fD~i~si~~~eh---~~~---~~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         111 LRSKRVLLAGWEQ-----FDEPVDRIVSIGAFEH---FGH---ERYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             CSCEEEEESCGGG-----CCCCCSEEEEESCGGG---TCT---TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hhhhHHHHhhhhc-----ccccccceeeehhhhh---cCc---hhHHHHHHHHHhhcCCCCcEEEEE
Confidence            4688999999654     246899888 455432   121   123689999999999999999874

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=95.67  E-value=0.014  Score=41.74  Aligned_cols=87  Identities=16%  Similarity=0.081  Sum_probs=55.2

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHH
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTL   85 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~   85 (132)
                      +-+.+++.+|..+.+..   ++||+|+....-.        .  -.++++.++++|+|||.+++..  ...  +....+.
T Consensus       166 ~~~~~~~~~d~~~~~~~---~~fD~V~ani~~~--------~--l~~l~~~~~~~LkpGG~lilSg--il~--~~~~~v~  228 (254)
T d2nxca1         166 GVRPRFLEGSLEAALPF---GPFDLLVANLYAE--------L--HAALAPRYREALVPGGRALLTG--ILK--DRAPLVR  228 (254)
T ss_dssp             TCCCEEEESCHHHHGGG---CCEEEEEEECCHH--------H--HHHHHHHHHHHEEEEEEEEEEE--EEG--GGHHHHH
T ss_pred             CCceeEEeccccccccc---cccchhhhccccc--------c--HHHHHHHHHHhcCCCcEEEEEe--cch--hhHHHHH
Confidence            34567889998876544   6899999865321        1  2678899999999999998742  111  1234566


Q ss_pred             HHHHhh-CCCceEeEEeccCcCCCceeEEEee
Q psy4593          86 QHCASV-FPRVAYGATCVPTYPSGQIGFVLGS  116 (132)
Q Consensus        86 ~~l~~v-F~~v~~~~~~~p~~~~~~~~f~~as  116 (132)
                      +.+++. |..+....       .+.|..+...
T Consensus       229 ~~~~~~Gf~~~~~~~-------~~~Wv~l~~~  253 (254)
T d2nxca1         229 EAMAGAGFRPLEEAA-------EGEWVLLAYG  253 (254)
T ss_dssp             HHHHHTTCEEEEEEE-------ETTEEEEEEE
T ss_pred             HHHHHCCCEEEEEEE-------ECCEEEEEEe
Confidence            666665 65444321       2457655443

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.60  E-value=0.054  Score=37.94  Aligned_cols=99  Identities=9%  Similarity=0.078  Sum_probs=58.4

Q ss_pred             CCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE--ecCCC--CCChH-H
Q psy4593           7 YPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS--QAGTL--WYSLD-C   80 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~--~~~~~--~~~~~-~   80 (132)
                      +++..+..|+..--.- .....+|+|+.|...+.         -...+++.+++.|+|||.+++  .+.+.  ....+ .
T Consensus       122 ~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~~---------~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v  192 (227)
T d1g8aa_         122 RNIVPILGDATKPEEYRALVPKVDVIFEDVAQPT---------QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQV  192 (227)
T ss_dssp             TTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTT---------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHH
T ss_pred             CCceEEEEECCCcccccccccceEEEEEEccccc---------hHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHH
Confidence            5667777887543221 13468999999987551         246789999999999998875  33222  12333 3


Q ss_pred             HHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeec
Q psy4593          81 VGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQ  117 (132)
Q Consensus        81 ~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~  117 (132)
                      ++.+.+.+++.|.-+..  ..+..|..+ -..++|-|
T Consensus       193 ~~~v~~l~~~gf~iie~--i~L~p~~~~-H~~vv~rK  226 (227)
T d1g8aa_         193 FREVERELSEYFEVIER--LNLEPYEKD-HALFVVRK  226 (227)
T ss_dssp             HHHHHHHHHTTSEEEEE--EECTTTSSS-EEEEEEEC
T ss_pred             HHHHHHHHHcCCEEEEE--EcCCCCCCc-eEEEEEEe
Confidence            44444445556765543  234445332 34455544

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.51  E-value=0.0055  Score=44.91  Aligned_cols=58  Identities=12%  Similarity=0.155  Sum_probs=43.2

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ..+++++.+|..+. .. ..+++|+|+.+....    .....-.-.++++.+++.|+|||.++-
T Consensus        81 ~~~v~~~~~~~~~~-~~-~~~~~D~ivs~~~~~----~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_          81 DHVVTIIKGKVEEV-EL-PVEKVDIIISEWMGY----CLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             TTTEEEEESCTTTC-CC-SSSCEEEEEECCCBB----TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccceEeccHHHc-cc-ccceeEEEeeeeeee----eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            36789999998773 33 457999999987643    233333457889999999999999863

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0057  Score=44.58  Aligned_cols=58  Identities=12%  Similarity=0.035  Sum_probs=42.7

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      +++++++.+|..+. .. ..++||+|+.+....    .......-..+...+++.|+|||.++.
T Consensus        83 ~~~i~~~~~~~~~l-~~-~~~~~D~Ivse~~~~----~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1          83 EDTITLIKGKIEEV-HL-PVEKVDVIISEWMGY----FLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             TTTEEEEESCTTTS-CC-SCSCEEEEEECCCBT----TBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             CccceEEEeeHHHh-cC-ccccceEEEEeeeee----ecccccccHHHHHHHHhcCCCCcEEec
Confidence            46889999997774 33 467999999987654    223334456777788899999999874

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.48  E-value=0.0063  Score=44.78  Aligned_cols=58  Identities=12%  Similarity=0.048  Sum_probs=42.2

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ..+++++.+|..+. .- .+++||+|+.+....    .....-.-...+..+++.|+|||++.-
T Consensus        86 ~~~i~~i~~~~~~l-~~-~~~~~D~i~se~~~~----~~~~e~~~~~~~~a~~r~LkpgG~iiP  143 (328)
T d1g6q1_          86 SDKITLLRGKLEDV-HL-PFPKVDIIISEWMGY----FLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             TTTEEEEESCTTTS-CC-SSSCEEEEEECCCBT----TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             cccceEEEeehhhc-cC-cccceeEEEEEecce----eeccchhHHHHHHHHHhccCCCeEEEe
Confidence            46788899987663 22 468999999987654    223333446678888999999999963

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.016  Score=41.11  Aligned_cols=53  Identities=4%  Similarity=-0.004  Sum_probs=34.0

Q ss_pred             EEEEccHHHHh----cCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593          10 LSARQDCTDFM----SGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus        10 ~v~~~Dg~~~l----~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .++..++-+|.    ....+++||+|+. .+...   .  +.   -..+++.+++.|+|||++++.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~---~--~d---~~~~l~~l~~~LkpgG~l~i~  159 (280)
T d1jqea_         102 AWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYY---V--KD---IPATLKFFHSLLGTNAKMLII  159 (280)
T ss_dssp             EEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGG---C--SC---HHHHHHHHHHTEEEEEEEEEE
T ss_pred             cchhhhhhhhcchhcccCCCCceeEEEEccceec---C--CC---HHHHHHHHHhhCCCCCEEEEE
Confidence            34455554442    1224679999996 44322   1  11   158999999999999988765

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0042  Score=42.95  Aligned_cols=57  Identities=14%  Similarity=0.084  Sum_probs=38.9

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ++++.+++|+.++- - .+++||+|+.-..-.    ..+.. --.++++.+++.|+|||.+++.
T Consensus       109 ~~~~f~~~d~~~~~-~-~~~~fD~I~~~~~l~----h~~~~-~~~~~l~~i~~~Lk~~G~~~i~  165 (222)
T d2ex4a1         109 RVRNYFCCGLQDFT-P-EPDSYDVIWIQWVIG----HLTDQ-HLAEFLRRCKGSLRPNGIIVIK  165 (222)
T ss_dssp             GEEEEEECCGGGCC-C-CSSCEEEEEEESCGG----GSCHH-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccccccccccc-c-ccccccccccccccc----cchhh-hhhhHHHHHHHhcCCcceEEEE
Confidence            45688999988853 2 468999999642211    11110 0146999999999999998863

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=95.30  E-value=0.0046  Score=42.00  Aligned_cols=55  Identities=9%  Similarity=0.055  Sum_probs=38.4

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++++.+|+.+. .- .+++||+|++-..=.    ..+.   -..+++.++++|+|||.+++.
T Consensus        73 ~~~~~~~~d~~~l-~~-~~~~fD~I~~~~~l~----h~~d---~~~~l~~~~~~L~pgG~l~i~  127 (208)
T d1vlma_          73 RGVFVLKGTAENL-PL-KDESFDFALMVTTIC----FVDD---PERALKEAYRILKKGGYLIVG  127 (208)
T ss_dssp             TTCEEEECBTTBC-CS-CTTCEEEEEEESCGG----GSSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccccccccc-cc-ccccccccccccccc----cccc---cccchhhhhhcCCCCceEEEE
Confidence            3578899998653 22 468999999632211    1111   257899999999999998875

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=95.11  E-value=0.0037  Score=44.12  Aligned_cols=60  Identities=18%  Similarity=0.085  Sum_probs=37.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .++..+.+|+..-... ..++||+|++-..--+  . ....---..+++.++++|+|||+++..
T Consensus        74 ~~v~f~~~D~~~~~~~-~~~~fD~V~~~~~l~~--~-~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          74 FKVFFRAQDSYGRHMD-LGKEFDVISSQFSFHY--A-FSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             SEEEEEESCTTTSCCC-CSSCEEEEEEESCGGG--G-GSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cceEEEEcchhhhccc-ccccceEEEEcceeee--c-CCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            4677888997543222 3568999986421110  0 000001146899999999999999874

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.10  E-value=0.021  Score=39.47  Aligned_cols=89  Identities=12%  Similarity=-0.000  Sum_probs=56.9

Q ss_pred             CCcEEEEccHHHHhcC-CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe--c---CCCCCChHH
Q psy4593           7 YPVLSARQDCTDFMSG-PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ--A---GTLWYSLDC   80 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~-~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~--~---~~~~~~~~~   80 (132)
                      +++..+.+|+...-.. ......|+|+.|...+         --...|++.+++.|+|||.+++-  +   .+.......
T Consensus       104 ~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~  174 (209)
T d1nt2a_         104 NNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQK---------NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEV  174 (209)
T ss_dssp             SSEEEECSCTTCGGGTTTTCCCEEEEEECCCST---------THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHH
T ss_pred             CCceEEEeeccCccccccccceEEEEEecccCh---------hhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHH
Confidence            5778888887653222 1235788888887554         12468999999999999998753  2   111112345


Q ss_pred             HHHHHHHHHhhCCCceEeEEeccCcC
Q psy4593          81 VGNTLQHCASVFPRVAYGATCVPTYP  106 (132)
Q Consensus        81 ~~~~~~~l~~vF~~v~~~~~~~p~~~  106 (132)
                      ++...+.+++.|.-+..  ...+.|.
T Consensus       175 ~~~~~~~l~~gf~i~E~--i~L~P~~  198 (209)
T d1nt2a_         175 FKSVLKEMEGDFKIVKH--GSLMPYH  198 (209)
T ss_dssp             HHHHHHHHHTTSEEEEE--EECTTTC
T ss_pred             HHHHHHHHHcCCEEEEE--EccCCCc
Confidence            67777777777865553  2344453

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.04  E-value=0.0056  Score=42.57  Aligned_cols=51  Identities=14%  Similarity=-0.053  Sum_probs=35.3

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      -.++.++++|+.+-+..  ..+||+|+++..-+    ..+         +.+.+.|+|||.+++..
T Consensus       125 ~~n~~~~~~d~~~~~~~--~~~fD~I~~~~~~~----~~p---------~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         125 IENVIFVCGDGYYGVPE--FSPYDVIFVTVGVD----EVP---------ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             CCSEEEEESCGGGCCGG--GCCEEEEEECSBBS----CCC---------HHHHHHEEEEEEEEEEB
T ss_pred             ccccccccCchHHcccc--ccchhhhhhhccHH----HhH---------HHHHHhcCCCcEEEEEE
Confidence            45778888998774433  46799999876422    122         34567799999998743

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=95.01  E-value=0.0062  Score=41.89  Aligned_cols=51  Identities=16%  Similarity=0.249  Sum_probs=34.5

Q ss_pred             EEEccHHHHhcCCCCCeecEEEE-c-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593          11 SARQDCTDFMSGPVKNMCGLVVS-G-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus        11 v~~~Dg~~~l~~~~~~~yDvIi~-D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .+.+|+.+ +.- .+++||+|++ . +..-     .+.   ..++++.+++.|+|||++++..
T Consensus        88 ~~~~~~~~-l~~-~~~~fD~ii~~~~~~~~-----~~d---~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1          88 VVEAKAED-LPF-PSGAFEAVLALGDVLSY-----VEN---KDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             EEECCTTS-CCS-CTTCEEEEEECSSHHHH-----CSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccc-ccc-ccccccceeeecchhhh-----hhh---HHHHHHHHHhhcCcCcEEEEEE
Confidence            56667655 332 4689999985 3 2211     111   2678999999999999999864

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.00  E-value=0.0064  Score=42.82  Aligned_cols=51  Identities=20%  Similarity=0.187  Sum_probs=36.8

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAG   72 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~   72 (132)
                      .++.++.+||.+-...  ...||+|++++.-+    ..+         +.+.+.|+|||.+++..+
T Consensus       141 ~nv~~~~~d~~~~~~~--~~~fD~Iiv~~a~~----~~p---------~~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         141 GQLLIVEGDGRKGYPP--NAPYNAIHVGAAAP----DTP---------TELINQLASGGRLIVPVG  191 (223)
T ss_dssp             TSEEEEESCGGGCCGG--GCSEEEEEECSCBS----SCC---------HHHHHTEEEEEEEEEEES
T ss_pred             cEEEEEeccccccccc--ccceeeEEEEeech----hch---------HHHHHhcCCCcEEEEEEe
Confidence            4788999999875433  46899999987533    222         245678999999998543

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.93  E-value=0.025  Score=40.92  Aligned_cols=76  Identities=9%  Similarity=0.087  Sum_probs=46.8

Q ss_pred             CCCeecEEEEcCCCCCCCCCC----Cc-------------ccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHH
Q psy4593          24 VKNMCGLVVSGAAGPGRVVCP----AE-------------SLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQ   86 (132)
Q Consensus        24 ~~~~yDvIi~D~~dp~~~~~~----~~-------------~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~   86 (132)
                      ...+||.|++|++=.+  .|.    +.             .-...+.++.+.+.|+|||.++--++|.  ...+-..+++
T Consensus       168 ~~~~fd~IL~DaPCSg--~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~--~~~ENE~vv~  243 (284)
T d1sqga2         168 GEQQFDRILLDAPCSA--TGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV--LPEENSLQIK  243 (284)
T ss_dssp             TTCCEEEEEEECCCCC--GGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC--CGGGTHHHHH
T ss_pred             ccccccEEEEeccccc--cCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC--chhhCHHHHH
Confidence            3468999999986322  221    11             1125566788888999999998655553  3333455666


Q ss_pred             HHHhhCCCceEeEEecc
Q psy4593          87 HCASVFPRVAYGATCVP  103 (132)
Q Consensus        87 ~l~~vF~~v~~~~~~~p  103 (132)
                      .+.+.+++........|
T Consensus       244 ~~l~~~~~~~~~~~~~~  260 (284)
T d1sqga2         244 AFLQRTADAELCETGTP  260 (284)
T ss_dssp             HHHHHCTTCEECSSBCS
T ss_pred             HHHHhCCCcEEecCCCC
Confidence            66666776665433333

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.92  E-value=0.0066  Score=41.15  Aligned_cols=56  Identities=14%  Similarity=0.149  Sum_probs=38.5

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++++.+.|..+.-   .+++||+|+.-..=.   .-++..  -..+++.++++|+|||++++.
T Consensus        78 ~~~~~~~~d~~~~~---~~~~fD~I~~~~~~~---~~~~~~--~~~~l~~~~~~L~pgG~~~~~  133 (198)
T d2i6ga1          78 DNLQTDLVDLNTLT---FDGEYDFILSTVVMM---FLEAQT--IPGLIANMQRCTKPGGYNLIV  133 (198)
T ss_dssp             TTEEEEECCTTTCC---CCCCEEEEEEESCGG---GSCTTH--HHHHHHHHHHTEEEEEEEEEE
T ss_pred             cchhhhheeccccc---ccccccEEEEeeeee---cCCHHH--HHHHHHHHHHHcCCCcEEEEE
Confidence            46788888866542   347899999743211   112221  357999999999999998875

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=94.58  E-value=0.011  Score=42.17  Aligned_cols=50  Identities=16%  Similarity=0.144  Sum_probs=36.0

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .++++.+++|+.+. .- .+++||+|+.- +.|       .      .++.++|.|+|||++++..
T Consensus       128 ~~~~~~~~~d~~~l-~~-~~~sfD~v~~~-~~~-------~------~~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         128 YPQVTFCVASSHRL-PF-SDTSMDAIIRI-YAP-------C------KAEELARVVKPGGWVITAT  177 (268)
T ss_dssp             CTTSEEEECCTTSC-SB-CTTCEEEEEEE-SCC-------C------CHHHHHHHEEEEEEEEEEE
T ss_pred             cccccceeeehhhc-cC-CCCCEEEEeec-CCH-------H------HHHHHHHHhCCCcEEEEEe
Confidence            46788889997663 22 46889999853 222       1      1577999999999999864

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=94.46  E-value=0.01  Score=42.64  Aligned_cols=28  Identities=4%  Similarity=-0.040  Sum_probs=25.3

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCC
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAA   36 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~   36 (132)
                      |++++.+|+.+||++ ...+||||++|.-
T Consensus       146 ri~li~~Ds~~~L~~-~~~~~DvIYlDPM  173 (250)
T d2oyra1         146 RLQLIHASSLTALTD-ITPRPQVVYLDPM  173 (250)
T ss_dssp             HEEEEESCHHHHSTT-CSSCCSEEEECCC
T ss_pred             hheeecCcHHHHHhc-cCCCCCEEEECCC
Confidence            789999999999998 6788999999964

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.033  Score=38.44  Aligned_cols=59  Identities=8%  Similarity=-0.156  Sum_probs=41.3

Q ss_pred             CCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ...+++++++|....-.. ....||+|+.=..-.    ..+.. --..+++.+.++|+|||.+++
T Consensus       108 ~~~~v~~~~~d~~~l~~~-~~~~fd~i~~~~~l~----~~~~~-~r~~~~~~~~~~LkpgG~~~l  166 (229)
T d2bzga1         108 SSGNISLYCCSIFDLPRT-NIGKFDMIWDRGALV----AINPG-DRKCYADTMFSLLGKKFQYLL  166 (229)
T ss_dssp             TTSSEEEEESCGGGGGGS-CCCCEEEEEESSSTT----TSCGG-GHHHHHHHHHHTEEEEEEEEE
T ss_pred             cCCcEEEEEcchhhcccc-ccCceeEEEEEEEEE----eccch-hhHHHHHHHHhhcCCcceEEE
Confidence            356889999999887655 567899997543221    11111 236789999999999997653

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=94.25  E-value=0.012  Score=41.45  Aligned_cols=56  Identities=13%  Similarity=0.049  Sum_probs=35.2

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ..|++.+.+|..+   . ....||+|++-..=.    ..+. --...+++.++++|+|||.+++.
T Consensus       129 ~~rv~~~~~D~~~---~-~~~~~D~v~~~~vlh----~~~d-~~~~~~L~~~~~~LkPGG~l~i~  184 (253)
T d1tw3a2         129 SDRVDVVEGDFFE---P-LPRKADAIILSFVLL----NWPD-HDAVRILTRCAEALEPGGRILIH  184 (253)
T ss_dssp             TTTEEEEECCTTS---C-CSSCEEEEEEESCGG----GSCH-HHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccchhhccccchh---h-cccchhheeeccccc----cCCc-hhhHHHHHHHHHhcCCCcEEEEE
Confidence            3678888888643   2 345789988532100    0010 01246799999999999988763

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=94.16  E-value=0.013  Score=39.22  Aligned_cols=52  Identities=13%  Similarity=0.154  Sum_probs=32.2

Q ss_pred             EEEEccHHHHhcC--CCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHH--HHhcCCCcEEEEe
Q psy4593          10 LSARQDCTDFMSG--PVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELM--SRALRPGGIVCSQ   70 (132)
Q Consensus        10 ~v~~~Dg~~~l~~--~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~--~~~L~p~Gil~~~   70 (132)
                      +++..|+-.++..  ...++||+|++|.+     .+.  .+ . +.+..+  +..|+|||++++.
T Consensus        91 ~v~~~~~d~~~~~~~~~~~~fD~If~DPP-----Y~~--~~-~-~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1          91 RVVALPVEVFLPEAKAQGERFTVAFMAPP-----YAM--DL-A-ALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             EEECSCHHHHHHHHHHTTCCEEEEEECCC-----TTS--CT-T-HHHHHHHHHTCEEEEEEEEEE
T ss_pred             ceeeeehhcccccccccCCccceeEEccc-----ccc--CH-H-HHHHHHHHcCCcCCCeEEEEE
Confidence            5677777666533  14578999999963     111  11 1 223333  3579999999975

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.98  E-value=0.12  Score=36.04  Aligned_cols=93  Identities=10%  Similarity=0.040  Sum_probs=58.1

Q ss_pred             CCCCCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe--cCCC--CC-C
Q psy4593           4 YRGYPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ--AGTL--WY-S   77 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~--~~~~--~~-~   77 (132)
                      -..+++..+.+|+.....-. ....+|+|+.|...+   .      -...+++.+++.|+|||.+++-  ..+.  .. .
T Consensus       119 ~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~---~------~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~  189 (230)
T d1g8sa_         119 AERENIIPILGDANKPQEYANIVEKVDVIYEDVAQP---N------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP  189 (230)
T ss_dssp             TTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCST---T------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH
T ss_pred             hhhcccceEEEeeccCcccccccceeEEeeccccch---H------HHHHHHHHHHHhcccCceEEEEeeccccCCCCCH
Confidence            34678888999988765441 223455666776544   1      1377899999999999997753  2221  11 2


Q ss_pred             hHHHHHHHHHHHhh-CCCceEeEEeccCcCC
Q psy4593          78 LDCVGNTLQHCASV-FPRVAYGATCVPTYPS  107 (132)
Q Consensus        78 ~~~~~~~~~~l~~v-F~~v~~~~~~~p~~~~  107 (132)
                      ...+....+.|++. |.-+..  ..+..|..
T Consensus       190 ~~~~~e~~~~L~~aGF~ive~--idL~py~~  218 (230)
T d1g8sa_         190 KEIFKEQKEILEAGGFKIVDE--VDIEPFEK  218 (230)
T ss_dssp             HHHHHHHHHHHHHHTEEEEEE--EECTTTST
T ss_pred             HHHHHHHHHHHHHcCCEEEEE--ecCCCCcC
Confidence            34567777888876 765553  23444533

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=93.97  E-value=0.17  Score=36.31  Aligned_cols=97  Identities=13%  Similarity=0.195  Sum_probs=59.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCC-CCCCC-------CCCccccc----HHHHHH-HHHhcCCCcEEEEecCC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAG-PGRVV-------CPAESLFQ----ASYFEL-MSRALRPGGIVCSQAGT   73 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~-------~~~~~L~t----~eF~~~-~~~~L~p~Gil~~~~~~   73 (132)
                      .++.++.+|..+.+.. ...+||+|+.+.+= |....       .|...|+.    -+||+. +++.|+|||++++=.+.
T Consensus       160 ~~~~i~~~~~~~~~~~-~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~  238 (271)
T d1nv8a_         160 DRFFVRKGEFLEPFKE-KFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE  238 (271)
T ss_dssp             TSEEEEESSTTGGGGG-GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred             ceeEEeeccccccccc-ccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH
Confidence            4678888898887765 55789999998651 11000       11112222    366655 78899999999875432


Q ss_pred             CCCChHHHHHHHHHHHhhCCCceEeEEeccCcCCCceeEEEeecC
Q psy4593          74 LWYSLDCVGNTLQHCASVFPRVAYGATCVPTYPSGQIGFVLGSQL  118 (132)
Q Consensus        74 ~~~~~~~~~~~~~~l~~vF~~v~~~~~~~p~~~~~~~~f~~as~~  118 (132)
                        .+.       +.+++.|.++.++    ..+. |..=++++++.
T Consensus       239 --~Q~-------~~v~~l~~~~g~~----kDl~-g~~R~~~~~k~  269 (271)
T d1nv8a_         239 --DQV-------EELKKIVSDTVFL----KDSA-GKYRFLLLNRR  269 (271)
T ss_dssp             --TCH-------HHHTTTSTTCEEE----ECTT-SSEEEEEEECC
T ss_pred             --HHH-------HHHHHHHHhCCEE----eccC-CCcEEEEEEEc
Confidence              222       4566778877763    4553 35556666654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.94  E-value=0.012  Score=41.28  Aligned_cols=52  Identities=17%  Similarity=0.114  Sum_probs=37.3

Q ss_pred             CCCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEec
Q psy4593           5 RGYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQA   71 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~   71 (132)
                      .-.++.++.+|+.+-...  ...||+|++.+.-+    ..+.         .+.+.|+|||.+++..
T Consensus       125 g~~nv~~~~gd~~~g~~~--~~pfD~Iiv~~a~~----~ip~---------~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         125 GVKNVHVILGDGSKGFPP--KAPYDVIIVTAGAP----KIPE---------PLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             TCCSEEEEESCGGGCCGG--GCCEEEEEECSBBS----SCCH---------HHHHTEEEEEEEEEEE
T ss_pred             CCceeEEEECccccCCcc--cCcceeEEeecccc----cCCH---------HHHHhcCCCCEEEEEE
Confidence            347899999999875433  57899999976433    2332         2456799999999864

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=93.80  E-value=0.015  Score=41.64  Aligned_cols=53  Identities=11%  Similarity=0.139  Sum_probs=36.2

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +++.+.+|+.+. .  .+++||+|++-..=.    ..+.   -..+++.++++|+|||.+++.
T Consensus        78 ~~~f~~~d~~~~-~--~~~~fD~v~~~~~l~----~~~d---~~~~l~~~~~~LkpgG~lii~  130 (281)
T d2gh1a1          78 DSEFLEGDATEI-E--LNDKYDIAICHAFLL----HMTT---PETMLQKMIHSVKKGGKIICF  130 (281)
T ss_dssp             EEEEEESCTTTC-C--CSSCEEEEEEESCGG----GCSS---HHHHHHHHHHTEEEEEEEEEE
T ss_pred             cccccccccccc-c--ccCCceEEEEehhhh----cCCC---HHHHHHHHHHHcCcCcEEEEE
Confidence            567788887653 2  246799999653211    1111   257899999999999998764

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=93.25  E-value=0.07  Score=36.01  Aligned_cols=85  Identities=14%  Similarity=0.176  Sum_probs=51.3

Q ss_pred             CCCeecEEEEcCCCCCCCCCCC--ccc----ccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceE
Q psy4593          24 VKNMCGLVVSGAAGPGRVVCPA--ESL----FQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAY   97 (132)
Q Consensus        24 ~~~~yDvIi~D~~dp~~~~~~~--~~L----~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~   97 (132)
                      ...++|+|+.|..-..  .+..  .+.    ....-+..+.+.|++||.+++-.   + +.+....++..|+..|..|.+
T Consensus        85 ~~~~~DlVlSD~ap~~--sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~---F-~g~~~~~l~~~l~~~F~~V~~  158 (180)
T d1ej0a_          85 GDSKVQVVMSDMAPNM--SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV---F-QGEGFDEYLREIRSLFTKVKV  158 (180)
T ss_dssp             TTCCEEEEEECCCCCC--CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE---E-SSTTHHHHHHHHHHHEEEEEE
T ss_pred             cCcceeEEEecccchh--cccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE---e-cCccHHHHHHHHHhhcCEEEE
Confidence            3468999999975321  1111  011    12223456778999999999852   1 223367788999999999987


Q ss_pred             eEEeccCcCCCceeEEEe
Q psy4593          98 GATCVPTYPSGQIGFVLG  115 (132)
Q Consensus        98 ~~~~~p~~~~~~~~f~~a  115 (132)
                      +.- -.+.+...=.+++|
T Consensus       159 ~KP-~aSR~~SsE~Ylv~  175 (180)
T d1ej0a_         159 RKP-DSSRARSREVYIVA  175 (180)
T ss_dssp             ECC-TTSCTTCCEEEEEE
T ss_pred             ECC-CCcccCCceEEEEE
Confidence            542 22333333445555

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=93.08  E-value=0.41  Score=34.36  Aligned_cols=77  Identities=12%  Similarity=0.068  Sum_probs=54.9

Q ss_pred             CCCCcEEEEccHHHHhcCC--CCCeecEEEEcCCCCCCCCCCCcccccHHH---HHHHHHhcC--CCcEEEEecCCCCCC
Q psy4593           5 RGYPVLSARQDCTDFMSGP--VKNMCGLVVSGAAGPGRVVCPAESLFQASY---FELMSRALR--PGGIVCSQAGTLWYS   77 (132)
Q Consensus         5 ~d~rv~v~~~Dg~~~l~~~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF---~~~~~~~L~--p~Gil~~~~~~~~~~   77 (132)
                      .|+|++++..||.+.+...  ..++=-+|++|.+     ....     .||   .+.+.++++  |.|++++|-  |..+
T Consensus       126 ~~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPp-----YE~k-----~ey~~v~~~l~~a~kr~~~g~~~iWY--Pi~~  193 (271)
T d2oo3a1         126 FNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS-----YERK-----EEYKEIPYAIKNAYSKFSTGLYCVWY--PVVN  193 (271)
T ss_dssp             TTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC-----CCST-----THHHHHHHHHHHHHHHCTTSEEEEEE--EESS
T ss_pred             cCCCceEEcCchHHHHHhhCCCCCCceEEEecCC-----cCCH-----HHHHHHHHHHHHHHHhCCCceEEEEe--eccC
Confidence            4699999999999999773  4466679999953     1111     233   233444555  899999985  5567


Q ss_pred             hHHHHHHHHHHHhhCC
Q psy4593          78 LDCVGNTLQHCASVFP   93 (132)
Q Consensus        78 ~~~~~~~~~~l~~vF~   93 (132)
                      ......+.+.|++.-+
T Consensus       194 ~~~~~~~~~~l~~~~~  209 (271)
T d2oo3a1         194 KAWTEQFLRKMREISS  209 (271)
T ss_dssp             HHHHHHHHHHHHHHCS
T ss_pred             cHHHHHHHHHHHhcCc
Confidence            7778888899987644

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=92.94  E-value=0.021  Score=39.20  Aligned_cols=55  Identities=16%  Similarity=0.210  Sum_probs=33.6

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .+++...+|...+    ....+|+|+.-..-.   .-+..  -...+++.+++.|+|||.+++.
T Consensus        92 ~~~~~~~~d~~~~----~~~~~d~i~~~~~l~---~~~~~--d~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_          92 IPVEILCNDIRHV----EIKNASMVILNFTLQ---FLPPE--DRIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             SCEEEECSCTTTC----CCCSEEEEEEESCGG---GSCGG--GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhhhccchhhcc----ccccceeeEEeeecc---ccChh--hHHHHHHHHHHhCCCCceeecc
Confidence            4555666665443    235677777643211   01111  1257999999999999999864

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.51  E-value=0.099  Score=38.19  Aligned_cols=65  Identities=18%  Similarity=0.193  Sum_probs=42.0

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCC----c-------------ccccHHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPA----E-------------SLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~----~-------------~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      .++.+..+|+..+ .. ...+||.|++|++=..  .|..    .             .-...+.++.+.+.|+|||.++-
T Consensus       167 ~~i~~~~~d~~~~-~~-~~~~fD~ILvDaPCSg--~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVY  242 (313)
T d1ixka_         167 LNVILFHSSSLHI-GE-LNVEFDKILLDAPCTG--SGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVY  242 (313)
T ss_dssp             CSEEEESSCGGGG-GG-GCCCEEEEEEECCTTS--TTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hcccccccccccc-cc-ccccccEEEEcccccc--CCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEE
Confidence            4566777887765 33 4678999999986322  2211    0             12344566788889999999876


Q ss_pred             ecCCCC
Q psy4593          70 QAGTLW   75 (132)
Q Consensus        70 ~~~~~~   75 (132)
                      -++|..
T Consensus       243 sTCSl~  248 (313)
T d1ixka_         243 STCSLE  248 (313)
T ss_dssp             EESCCC
T ss_pred             eeccCC
Confidence            555543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=91.95  E-value=0.051  Score=37.24  Aligned_cols=53  Identities=9%  Similarity=0.031  Sum_probs=36.7

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHH-HhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMS-RALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~-~~L~p~Gil~~~   70 (132)
                      .+++++.+|...+.   .+++||+|++ ++...     ...   ..++++.++ +.|+|||.+++.
T Consensus        64 ~~~~~~~~~~~~~~---~~~~fD~I~~~~vleh-----~~d---~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          64 DGITYIHSRFEDAQ---LPRRYDNIVLTHVLEH-----IDD---PVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             SCEEEEESCGGGCC---CSSCEEEEEEESCGGG-----CSS---HHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccccccccccccc---cccccccccccceeEe-----cCC---HHHHHHHHHHHhcCCCceEEEE
Confidence            46888888876642   3578999995 33211     111   267788887 789999999874

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=91.95  E-value=0.13  Score=36.86  Aligned_cols=71  Identities=8%  Similarity=0.042  Sum_probs=48.8

Q ss_pred             CCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEecCCCCCChHHHHHHHHHHHhhCCCceE
Q psy4593          24 VKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQAGTLWYSLDCVGNTLQHCASVFPRVAY   97 (132)
Q Consensus        24 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~~~~~~~~~~~~~l~~vF~~v~~   97 (132)
                      ...+.|+|++|.-... +.....+.-+.+-++.+.+-|+|||-+++-+-+|+ . +...+.+..|+..|....+
T Consensus       129 ~~~~~D~vlcDm~ess-~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py-~-~~v~e~le~lq~~fgg~lV  199 (257)
T d2p41a1         129 PPERCDTLLCDIGESS-PNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY-M-SSVIEKMEALQRKHGGALV  199 (257)
T ss_dssp             CCCCCSEEEECCCCCC-SSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC-S-HHHHHHHHHHHHHHCCEEE
T ss_pred             CCCcCCEEEeeCCCCC-CCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC-C-hHHHHHHHHHHHHhCCeeE
Confidence            3578999999974210 01112344456778888999999999998765553 2 3467778899999987544

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.59  E-value=0.051  Score=38.74  Aligned_cols=43  Identities=12%  Similarity=0.145  Sum_probs=27.6

Q ss_pred             CCeecEEEEcC--CCCCCCC-CCCccc-ccHHHHHHHHHhcCCCcEEEEe
Q psy4593          25 KNMCGLVVSGA--AGPGRVV-CPAESL-FQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus        25 ~~~yDvIi~D~--~dp~~~~-~~~~~L-~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      .++||+|++-.  ...   . .+.... --..+++.++++|+|||++++.
T Consensus       127 ~~~fd~v~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  173 (292)
T d1xvaa_         127 GDGFDAVICLGNSFAH---LPDSKGDQSEHRLALKNIASMVRPGGLLVID  173 (292)
T ss_dssp             TTCEEEEEECSSCGGG---SCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCCceEEEEecCchhh---cCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence            46899998632  211   1 000000 1245999999999999999985

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=90.86  E-value=0.067  Score=37.71  Aligned_cols=54  Identities=20%  Similarity=0.101  Sum_probs=31.3

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEc-CCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSG-AAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D-~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +|++++.+|-.+   . ....||+|++= +..-+    +.+  -...+++.|+++|+|||.+++.
T Consensus       131 ~ri~~~~~d~~~---~-~p~~~D~v~~~~vLh~~----~d~--~~~~lL~~i~~~LkpgG~llI~  185 (256)
T d1qzza2         131 DRVTVAEGDFFK---P-LPVTADVVLLSFVLLNW----SDE--DALTILRGCVRALEPGGRLLVL  185 (256)
T ss_dssp             TTEEEEECCTTS---C-CSCCEEEEEEESCGGGS----CHH--HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceeeeeeeeccc---c-ccccchhhhcccccccc----CcH--HHHHHHHHHHhhcCCcceeEEE
Confidence            456666666432   2 23457777742 11110    000  1257899999999999988764

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.29  E-value=0.51  Score=33.78  Aligned_cols=83  Identities=11%  Similarity=0.017  Sum_probs=45.7

Q ss_pred             CCcEEEEccHHHHhcCC-CCCeecEEEEcCCCCCCCCCCC----c-------------cc--ccHHHHHHHHHhcCCCcE
Q psy4593           7 YPVLSARQDCTDFMSGP-VKNMCGLVVSGAAGPGRVVCPA----E-------------SL--FQASYFELMSRALRPGGI   66 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~-~~~~yDvIi~D~~dp~~~~~~~----~-------------~L--~t~eF~~~~~~~L~p~Gi   66 (132)
                      .++++..+|+..+-... ...+||.|++|++=..  .|..    .             .|  ...+.++.+. .|++||.
T Consensus       145 ~~~~~~~~d~~~~~~~~~~~~~fD~VL~DaPCSg--~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~  221 (293)
T d2b9ea1         145 SCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSG--SGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQR  221 (293)
T ss_dssp             CSEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC--------------------CCHHHHHHHHHHHHHHHT-TCTTCCE
T ss_pred             cceeeeehhhhhhcccccccceeeEEeecCcccc--hhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccE
Confidence            46788889988754331 1257999999986221  2210    0             11  1122233333 4789998


Q ss_pred             EEEecCCCCCChHHHHHHHHHHHhhCCC
Q psy4593          67 VCSQAGTLWYSLDCVGNTLQHCASVFPR   94 (132)
Q Consensus        67 l~~~~~~~~~~~~~~~~~~~~l~~vF~~   94 (132)
                      ++--++|..  .++-..+++.+.+.+++
T Consensus       222 lvYsTCSl~--~~ENe~vV~~~L~~~~~  247 (293)
T d2b9ea1         222 LVYSTCSLC--QEENEDVVRDALQQNPG  247 (293)
T ss_dssp             EEEEESCCC--GGGTHHHHHHHHTTSTT
T ss_pred             EEEeeccCC--hhHhHHHHHHHHHhCCC
Confidence            875455533  33345666666666664

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.84  E-value=0.043  Score=37.27  Aligned_cols=40  Identities=10%  Similarity=0.085  Sum_probs=28.0

Q ss_pred             CCeecEEEE-cCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593          25 KNMCGLVVS-GAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus        25 ~~~yDvIi~-D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ..+||+|++ ++...   ..+   =...+.++.++++|+|||+|++-
T Consensus       130 ~~~fDvI~CRNVLiY---f~~---~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         130 PGPFDAIFCRNVMIY---FDK---TTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             CCCEEEEEECSSGGG---SCH---HHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             CCCccEEEeehhHHh---cCH---HHHHHHHHHHHHHhCCCcEEEEe
Confidence            367999996 44322   111   12357899999999999999885

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.35  E-value=0.32  Score=32.40  Aligned_cols=82  Identities=13%  Similarity=0.081  Sum_probs=46.8

Q ss_pred             CcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCC-CC-C--------------------CcccccHHHHHHHHHhcCCCc
Q psy4593           8 PVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRV-VC-P--------------------AESLFQASYFELMSRALRPGG   65 (132)
Q Consensus         8 rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~-~~-~--------------------~~~L~t~eF~~~~~~~L~p~G   65 (132)
                      +..++.+|...+.   ...+||+|+.+.+--... .. .                    ...-....|++.+.+.|++||
T Consensus        62 ~~~~~~~~~~~~~---~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G  138 (223)
T d2ih2a1          62 WAEGILADFLLWE---PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGG  138 (223)
T ss_dssp             TEEEEESCGGGCC---CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEE
T ss_pred             cceeeeeehhccc---cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCC
Confidence            4577788865543   347899999886521100 00 0                    011124578899999999999


Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHhhC
Q psy4593          66 IVCSQAGTLWYSLDCVGNTLQHCASVF   92 (132)
Q Consensus        66 il~~~~~~~~~~~~~~~~~~~~l~~vF   92 (132)
                      .+++=..+.+........+.+.|.+.+
T Consensus       139 ~~~~I~p~~~l~~~~~~~lR~~l~~~~  165 (223)
T d2ih2a1         139 VLVFVVPATWLVLEDFALLREFLAREG  165 (223)
T ss_dssp             EEEEEEEGGGGTCGGGHHHHHHHHHHS
T ss_pred             ceEEEEeeeeccCcchHHHHHHHHhcC
Confidence            987533223333333344445555543

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=89.04  E-value=0.25  Score=34.58  Aligned_cols=58  Identities=10%  Similarity=0.099  Sum_probs=36.9

Q ss_pred             CCCCCcEEEEccHH--HHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           4 YRGYPVLSARQDCT--DFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         4 ~~d~rv~v~~~Dg~--~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ...+|++++.+|..  +.++...+..+|.||+|....     ....+  .++ . ....|++||++++-
T Consensus       126 ~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~H~-----~~~v~--~~~-~-~~~lLk~GG~iIve  185 (232)
T d2bm8a1         126 SDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHA-----NTFNI--MKW-A-VDHLLEEGDYFIIE  185 (232)
T ss_dssp             GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESSCS-----SHHHH--HHH-H-HHHTCCTTCEEEEC
T ss_pred             ccccceeeeecccccHHHHHHHHhcCCCEEEEcCCcc-----hHHHH--HHH-H-HhcccCcCCEEEEE
Confidence            34689999999864  344443445789999996422     11122  222 1 34689999999873

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=88.33  E-value=0.038  Score=36.18  Aligned_cols=58  Identities=9%  Similarity=-0.053  Sum_probs=33.3

Q ss_pred             CCCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           6 GYPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         6 d~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ...++++.+|..+.-.. ....||+|+.-..-.    ..+. --...+++.+++.|+|||.+.+
T Consensus        79 ~~~~~~~~~d~~~l~~~-~~~~~D~i~~~~~l~----~l~~-~~~~~~~~~i~~~LkpgG~l~l  136 (201)
T d1pjza_          79 APGIEIWCGDFFALTAR-DIGHCAAFYDRAAMI----ALPA-DMRERYVQHLEALMPQACSGLL  136 (201)
T ss_dssp             CSSSEEEEECCSSSTHH-HHHSEEEEEEESCGG----GSCH-HHHHHHHHHHHHHSCSEEEEEE
T ss_pred             ccccceecccccccccc-cccceeEEEEEeeeE----ecch-hhhHHHHHHHHHhcCCCcEEEE
Confidence            34555666665442111 235788887532211    1111 1135688999999999998664

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=86.80  E-value=1.2  Score=27.93  Aligned_cols=49  Identities=18%  Similarity=0.324  Sum_probs=34.9

Q ss_pred             EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc-EEEE
Q psy4593          12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG-IVCS   69 (132)
Q Consensus        12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G-il~~   69 (132)
                      ...||.+.++......||+|++|..-|.        .-..++.+.+++. .|+= ++++
T Consensus        29 ~~~~~~~al~~l~~~~~dlil~D~~mP~--------~~G~el~~~lr~~-~~~~pvI~l   78 (140)
T d1qkka_          29 SFASATEALAGLSADFAGIVISDIRMPG--------MDGLALFRKILAL-DPDLPMILV   78 (140)
T ss_dssp             EESCHHHHHHTCCTTCCSEEEEESCCSS--------SCHHHHHHHHHHH-CTTSCEEEE
T ss_pred             EeCChHHHHHHHhccCcchHHHhhccCC--------CCHHHHHHHHHHh-CCCCcEEEE
Confidence            4578888887766689999999987662        3357888888875 4443 4443

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.66  E-value=0.085  Score=36.29  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=27.1

Q ss_pred             CCCeecEEEEcCC-CCCCCCCCCcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593          24 VKNMCGLVVSGAA-GPGRVVCPAESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus        24 ~~~~yDvIi~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      ..++||+|+.-.. ..   .. ...---..+++.+++.|+|||.+++.
T Consensus       149 ~~~~fD~i~~~~~l~~---~~-~~~~~~~~~l~~i~~~LkpGG~li~~  192 (257)
T d2a14a1         149 VLPLADCVLTLLAMEC---AC-CSLDAYRAALCNLASLLKPGGHLVTT  192 (257)
T ss_dssp             CCCCEEEEEEESCHHH---HC-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cCCcccEEeehhhHHH---hc-ccHHHHHHHHHHHHhccCCCcEEEEE
Confidence            3568999986321 11   11 10111245789999999999999874

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=85.21  E-value=1.7  Score=26.35  Aligned_cols=49  Identities=10%  Similarity=0.078  Sum_probs=34.2

Q ss_pred             EEEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593          11 SARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus        11 v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ....+|.+.+..  .++||+|++|..-|.        .-..++.+.+++.=..--++++
T Consensus        29 ~~~~~~~~al~~--~~~~dlillD~~mP~--------~~G~~~~~~lr~~~~~~~ii~i   77 (120)
T d1p2fa2          29 KTFLTGEDFLND--EEAFHVVVLDVMLPD--------YSGYEICRMIKETRPETWVILL   77 (120)
T ss_dssp             EEESSHHHHHHC--CSCCSEEEEESBCSS--------SBHHHHHHHHHHHCTTSEEEEE
T ss_pred             EEECCHHHHHhc--CCCCCEEEEeCcccc--------cchhHHHHHHhhcCCCCcEEEE
Confidence            346789999876  467999999997772        2246788888765444445554

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.09  E-value=0.77  Score=30.87  Aligned_cols=65  Identities=9%  Similarity=-0.024  Sum_probs=42.3

Q ss_pred             CCCcEEEEccH---HHHhcCCCCCeecEEEEcCCCCCCCCCC--CcccccHHHHHHHHHhcCCCcEEEEe
Q psy4593           6 GYPVLSARQDC---TDFMSGPVKNMCGLVVSGAAGPGRVVCP--AESLFQASYFELMSRALRPGGIVCSQ   70 (132)
Q Consensus         6 d~rv~v~~~Dg---~~~l~~~~~~~yDvIi~D~~dp~~~~~~--~~~L~t~eF~~~~~~~L~p~Gil~~~   70 (132)
                      +.|++++.++.   ..++.....+++|.|+.|+--...-...  -+--+..+++..+.+.|+|||.+++-
T Consensus        71 ~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii  140 (192)
T d1m6ya2          71 SDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVI  140 (192)
T ss_dssp             TTTEEEEECCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEE
T ss_pred             cccccchhHHHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeee
Confidence            46788888754   4445553458999999996311000001  12223568889999999999999874

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=84.69  E-value=0.38  Score=34.55  Aligned_cols=83  Identities=12%  Similarity=0.018  Sum_probs=45.1

Q ss_pred             CCcEEEEccHHHHhcCCCCCeecEEEEcCCCCCC---------CC--CCCcccccHHHHHHHHHhcCCCcEEEEecCCCC
Q psy4593           7 YPVLSARQDCTDFMSGPVKNMCGLVVSGAAGPGR---------VV--CPAESLFQASYFELMSRALRPGGIVCSQAGTLW   75 (132)
Q Consensus         7 ~rv~v~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~---------~~--~~~~~L~t~eF~~~~~~~L~p~Gil~~~~~~~~   75 (132)
                      .+..+..+|...   .....+||+||.+.+=...         ..  .........-|++.+.+.|+|||.+++=..+.+
T Consensus       171 ~~~~~~~~d~~~---~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~  247 (328)
T d2f8la1         171 QKMTLLHQDGLA---NLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAM  247 (328)
T ss_dssp             CCCEEEESCTTS---CCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGG
T ss_pred             hhhhhhcccccc---ccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCcc
Confidence            345556666433   2244789999999752100         00  011112234589999999999997654321223


Q ss_pred             CChHHHHHHHHHHHhhC
Q psy4593          76 YSLDCVGNTLQHCASVF   92 (132)
Q Consensus        76 ~~~~~~~~~~~~l~~vF   92 (132)
                      ........+.+.|.+.+
T Consensus       248 l~~~~~~~lR~~L~~~~  264 (328)
T d2f8la1         248 FGTSDFAKVDKFIKKNG  264 (328)
T ss_dssp             GGSTTHHHHHHHHHHHE
T ss_pred             ccCchhHHHHHHHHhCC
Confidence            32233445555666655

>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulatory protein StyR, N-terminal domain
species: Pseudomonas fluorescens [TaxId: 294]

Probab=82.69  E-value=1.8  Score=26.48  Aligned_cols=50  Identities=16%  Similarity=0.095  Sum_probs=34.3

Q ss_pred             EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593          12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus        12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ...+|.+.++......||+||+|..-|.        .-..++++.+++.-..--++++
T Consensus        31 ~a~~~~~al~~~~~~~~dliilD~~mp~--------~~G~~~~~~i~~~~~~~~ii~l   80 (128)
T d1yioa2          31 TFDCASTFLEHRRPEQHGCLVLDMRMPG--------MSGIELQEQLTAISDGIPIVFI   80 (128)
T ss_dssp             EESSHHHHHHHCCTTSCEEEEEESCCSS--------SCHHHHHHHHHHTTCCCCEEEE
T ss_pred             ccccHHHHHHHHHhcCCCEeehhhhccc--------chhHHHHHHHHhhCCCCeEEEE
Confidence            3456777776655678999999998772        2345778888876555555554

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=82.65  E-value=2.7  Score=25.51  Aligned_cols=48  Identities=10%  Similarity=0.080  Sum_probs=32.1

Q ss_pred             EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593          13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus        13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ..+|.+.++...+.+||+|++|..-|.        .-..++++.+++. .|+--+++
T Consensus        33 a~~~~~al~~~~~~~~dlvi~D~~mp~--------~~G~e~~~~lr~~-~~~~~iI~   80 (123)
T d1dbwa_          33 HQSAEAFLAFAPDVRNGVLVTDLRMPD--------MSGVELLRNLGDL-KINIPSIV   80 (123)
T ss_dssp             ESCHHHHHHHGGGCCSEEEEEECCSTT--------SCHHHHHHHHHHT-TCCCCEEE
T ss_pred             ECCHHHHHHHHhhcCCcEEEEeccCcc--------ccchHHHHHHHhc-CCCCeEEE
Confidence            456666665544578999999998772        3357889999875 44444443

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=82.59  E-value=0.99  Score=27.54  Aligned_cols=40  Identities=13%  Similarity=0.114  Sum_probs=29.1

Q ss_pred             EEccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHH
Q psy4593          12 ARQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSR   59 (132)
Q Consensus        12 ~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~   59 (132)
                      ...||.+.++...+..||+|++|..-|.        .-..++.+.+++
T Consensus        29 ~a~~~~~al~~l~~~~~dlil~D~~mp~--------~~G~~l~~~lr~   68 (121)
T d1zesa1          29 EAEDYDSAVNQLNEPWPDLILLDWMLPG--------GSGIQFIKHLKR   68 (121)
T ss_dssp             EECSHHHHHHHSSSSCCSEEEECSSCTT--------SCHHHHHHHHHH
T ss_pred             EECChHHHHHHHHccCCCEEEeecCCCC--------CCHHHHHHHHHh
Confidence            3457777776655678999999987662        335778888876

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.40  E-value=0.9  Score=27.86  Aligned_cols=54  Identities=7%  Similarity=0.009  Sum_probs=35.2

Q ss_pred             CcEEE--EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCc-EEEE
Q psy4593           8 PVLSA--RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGG-IVCS   69 (132)
Q Consensus         8 rv~v~--~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G-il~~   69 (132)
                      .+.++  ..||.+.++.....+||+|++|..-|.        +-..|+.+.+++.....= ++++
T Consensus        26 ~~~~v~~a~~g~~al~~~~~~~~dlillD~~mP~--------~dG~e~~~~ir~~~~~~~~ii~~   82 (123)
T d1dz3a_          26 DMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPH--------LDGLAVLERIRAGFEHQPNVIML   82 (123)
T ss_dssp             TEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSS--------SCHHHHHHHHHHHCSSCCEEEEE
T ss_pred             CcEEEEEECCHHHHHHHHHhcCCCEEEEcCCCCC--------CCHHHHHHHHHhcCCCCCeEEEE
Confidence            34444  457766665533468999999998772        335788999987665442 4443

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.38  E-value=3.2  Score=25.11  Aligned_cols=43  Identities=9%  Similarity=0.199  Sum_probs=28.4

Q ss_pred             EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCC
Q psy4593          13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPG   64 (132)
Q Consensus        13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~   64 (132)
                      ..||.+.++.....+||+|++|..-|.        .-..|+.+.+++. .|+
T Consensus        33 a~~~~~a~~~l~~~~~dlii~D~~mp~--------~~G~el~~~l~~~-~~~   75 (123)
T d1krwa_          33 FENGNEVLAALASKTPDVLLSDIRMPG--------MDGLALLKQIKQR-HPM   75 (123)
T ss_dssp             ESSSHHHHHHHTTCCCSEEEECCSSSS--------STTHHHHHHHHHH-SSS
T ss_pred             eCCHHHHHHHHHhCCCCEEEehhhcCC--------chHHHHHHHHHHh-CCC
Confidence            355555554434478999999987662        2346788888775 444

>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Nitrate/nitrite response regulator (NarL), receiver domain
species: Escherichia coli [TaxId: 562]

Probab=80.46  E-value=2  Score=26.60  Aligned_cols=54  Identities=7%  Similarity=0.012  Sum_probs=35.6

Q ss_pred             CCcEEE--EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593           7 YPVLSA--RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus         7 ~rv~v~--~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      +.+.++  ..||.+.++.....+||+|++|..-|.        .-..|..+.+++. .|+.-+++
T Consensus        26 ~~~~~v~~a~~~~~al~~~~~~~~DlvllD~~mP~--------~~G~el~~~ir~~-~~~~~viv   81 (138)
T d1a04a2          26 PDITVVGEASNGEQGIELAESLDPDLILLDLNMPG--------MNGLETLDKLREK-SLSGRIVV   81 (138)
T ss_dssp             TTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTT--------SCHHHHHHHHHHS-CCCSEEEE
T ss_pred             CCcEEEEEECCHHHHHHHHHhcCCCEEEEecCCCC--------CCHHHHHHHHHhh-CCCCCEEE
Confidence            344444  568888776533468999999997762        2357888888764 45554443

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.11  E-value=1.1  Score=27.42  Aligned_cols=49  Identities=10%  Similarity=-0.082  Sum_probs=31.4

Q ss_pred             EccHHHHhcCCCCCeecEEEEcCCCCCCCCCCCcccccHHHHHHHHHhcCCCcEEEE
Q psy4593          13 RQDCTDFMSGPVKNMCGLVVSGAAGPGRVVCPAESLFQASYFELMSRALRPGGIVCS   69 (132)
Q Consensus        13 ~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gil~~   69 (132)
                      ..||.+.++.....+||+|++|..-|.        .-..++.+.+++.-..--++++
T Consensus        31 a~~~~~al~~l~~~~~dlillD~~mp~--------~~g~~~~~~lr~~~~~~piI~l   79 (122)
T d1kgsa2          31 CYDGEEGMYMALNEPFDVVILDIMLPV--------HDGWEILKSMRESGVNTPVLML   79 (122)
T ss_dssp             ESSHHHHHHHHHHSCCSEEEEESCCSS--------SCHHHHHHHHHHTTCCCCEEEE
T ss_pred             EcchHHHHHHHHhhCcccccccccccc--------chhHHHHHHHHhcCCCCcEEEE
Confidence            456666554434478999999987662        3346778888765433345554