Psyllid ID: psy5791

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MSVNISVEAPVENIIQEISYDGQEIYQLSDNTFMVHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEILT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccEEEEEEcccEEEEEcHHHHHHHHHcccccccccccccccccHHHHccccccccHHHHHHHcHccccc
Coil and Loop (DISEMBL)
msvnisveapvENIIQEISYdgqeiyqlsdntfmvhhknthhpfphpssgpigpskrrciagptgadrYELLEltkseilt
Flexible Loop (DISEMBL)
msvnisveapveNIIQEISYDGQEIYQLSDNTFMVHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGAdryelleltkseilt
Low Complexity Region (SEG)
MSVNISVEAPVENIIQEISYDGQEIYQLSDNTFMVHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEILT
Disordered region (IsUnstruct)
*********PVENIIQEISYDGQEIYQLSDNTFMVHH********************************************
Disordered Region (DISOPRED)
**********************QEIYQLSDNTFMVHHKNTH**********************TGADRYELL*********
Disordered Region (DISEMBL)
MSVNISVEAPVENIIQEISYDGQEIYQLSDNTFMVHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEILT
Disordered Region (DISPRO)
*SVNISVEAPVENIIQEISYDGQEIYQLSDNTFMVHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSVNISVEAPVENIIQEISYDGQEIYQLSDNTFMVHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEILT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
Q17JT4	645	Mediator of RNA polymeras	N/A	N/A	0.555	0.069	0.733	7e-16
Q7PVZ2	645	Mediator of RNA polymeras	yes	N/A	0.555	0.069	0.733	9e-16
Q9VEC1	642	Mediator of RNA polymeras	yes	N/A	0.567	0.071	0.608	4e-13

>sp|Q17JT4|MED17_AEDAE Mediator of RNA polymerase II transcription subunit 17 OS=Aedes aegypti GN=MED17 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 33/45 (73%), Positives = 40/45 (88%)

Query: 36  HHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
           HHKNTHHPFPHP+S P+GPSK+R +AGP+  DRYELLE+TKS+ L
Sbjct: 379 HHKNTHHPFPHPASAPLGPSKKRMLAGPSAFDRYELLEMTKSQTL 423

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Aedes aegypti (taxid: 7159)

>sp|Q7PVZ2|MED17_ANOGA Mediator of RNA polymerase II transcription subunit 17 OS=Anopheles gambiae GN=MED17 PE=3 SV=2

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 33/45 (73%), Positives = 41/45 (91%)

Query: 36  HHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
           HHKNTHHPFPHP+SGP+GPSK+R +AGP+  DR+ELLE+TKS+ L
Sbjct: 379 HHKNTHHPFPHPASGPLGPSKKRMLAGPSAYDRHELLEMTKSQTL 423

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Anopheles gambiae (taxid: 7165)

>sp|Q9VEC1|MED17_DROME Mediator of RNA polymerase II transcription subunit 17 OS=Drosophila melanogaster GN=MED17 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 39/46 (84%)

Query: 35  VHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
           VH+KN+HHPFPHP+S P+GP+K+R +AGP  ADR  LL++TKS+ +
Sbjct: 374 VHYKNSHHPFPHPASAPLGPTKKRMLAGPMAADRETLLDMTKSQTI 419

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Required for activated transcription of the MtnA, MtnB and MtnD genes. Negatively regulates sex comb development.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
340713035	644	PREDICTED: LOW QUALITY PROTEIN: mediator	0.518	0.065	0.869	2e-18
380011201	644	PREDICTED: LOW QUALITY PROTEIN: mediator	0.518	0.065	0.869	2e-18
66507375	644	PREDICTED: mediator of RNA polymerase II	0.518	0.065	0.869	2e-18
383847603	644	PREDICTED: mediator of RNA polymerase II	0.518	0.065	0.869	2e-18
350419682	644	PREDICTED: mediator of RNA polymerase II	0.518	0.065	0.869	2e-18
156551237	641	PREDICTED: mediator of RNA polymerase II	0.518	0.065	0.847	8e-18
307212331	646	Mediator of RNA polymerase II transcript	0.518	0.065	0.826	3e-17
91080451	639	PREDICTED: similar to AGAP009141-PA [Tri	0.567	0.071	0.782	7e-16
193641165	642	PREDICTED: mediator of RNA polymerase II	0.518	0.065	0.739	4e-15
242014384	651	CRSP complex subunit, putative [Pediculu	0.518	0.064	0.782	8e-15

>gi|340713035|ref|XP_003395057.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 17-like [Bombus terrestris]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/46 (86%), Positives = 44/46 (95%)

Query: 35  VHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
           VHHKNTHHPFPHPSSGP+GPSKRRC+AGPT ADRYELLE+TKS+ L
Sbjct: 380 VHHKNTHHPFPHPSSGPLGPSKRRCLAGPTAADRYELLEMTKSQTL 425

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011201|ref|XP_003689699.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 17-like [Apis florea]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/46 (86%), Positives = 44/46 (95%)

Query: 35  VHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
           VHHKNTHHPFPHPSSGP+GPSKRRC+AGPT ADRYELLE+TKS+ L
Sbjct: 380 VHHKNTHHPFPHPSSGPLGPSKRRCLAGPTAADRYELLEMTKSQTL 425

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66507375|ref|XP_394516.2| PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Apis mellifera]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/46 (86%), Positives = 44/46 (95%)

Query: 35  VHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
           VHHKNTHHPFPHPSSGP+GPSKRRC+AGPT ADRYELLE+TKS+ L
Sbjct: 380 VHHKNTHHPFPHPSSGPLGPSKRRCLAGPTAADRYELLEMTKSQTL 425

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847603|ref|XP_003699442.1| PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Megachile rotundata]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/46 (86%), Positives = 44/46 (95%)

Query: 35  VHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
           VHHKNTHHPFPHPSSGP+GPSKRRC+AGPT ADRYELLE+TKS+ L
Sbjct: 380 VHHKNTHHPFPHPSSGPLGPSKRRCLAGPTAADRYELLEMTKSQTL 425

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419682|ref|XP_003492267.1| PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Bombus impatiens]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/46 (86%), Positives = 44/46 (95%)

Query: 35  VHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
           VHHKNTHHPFPHPSSGP+GPSKRRC+AGPT ADRYELLE+TKS+ L
Sbjct: 380 VHHKNTHHPFPHPSSGPLGPSKRRCLAGPTAADRYELLEMTKSQTL 425

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551237|ref|XP_001605806.1| PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Nasonia vitripennis]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 44/46 (95%)

Query: 35  VHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
           VHHKNTHHPFPHPSSGP+GPSKRRC+AGPT ADR+ELLE+TKS+ L
Sbjct: 377 VHHKNTHHPFPHPSSGPLGPSKRRCLAGPTAADRHELLEMTKSQTL 422

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212331|gb|EFN88135.1| Mediator of RNA polymerase II transcription subunit 17 [Harpegnathos saltator]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/46 (82%), Positives = 42/46 (91%)

Query: 35  VHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
           VHHKNTHHP PHPSSGP+GPSKRRC+AGPT ADRYELLE+ KS+ L
Sbjct: 382 VHHKNTHHPLPHPSSGPLGPSKRRCLAGPTAADRYELLEMAKSQTL 427

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080451|ref|XP_969541.1| PREDICTED: similar to AGAP009141-PA [Tribolium castaneum] gi|270005569|gb|EFA02017.1| hypothetical protein TcasGA2_TC007640 [Tribolium castaneum]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 42/46 (91%)

Query: 35  VHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
           VHHKNTHHPFPHP++GP+GPSK+R +AGP  ADRYELLE+TKSE L
Sbjct: 374 VHHKNTHHPFPHPATGPLGPSKKRMLAGPMAADRYELLEMTKSETL 419

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193641165|ref|XP_001946953.1| PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Acyrthosiphon pisum]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 41/46 (89%)

Query: 35  VHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
           VHH+NTH PFPHPSSGP+GPSKRR +AGP  ADR+ELLE++KS+ L
Sbjct: 377 VHHRNTHQPFPHPSSGPLGPSKRRAVAGPNAADRFELLEMSKSQTL 422

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014384|ref|XP_002427871.1| CRSP complex subunit, putative [Pediculus humanus corporis] gi|212512340|gb|EEB15133.1| CRSP complex subunit, putative [Pediculus humanus corporis]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 41/46 (89%)

Query: 35  VHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
           VHH NTHHPFPHPSSGPIGPSK+R +AGPT +DR+ELLE+TKS  L
Sbjct: 386 VHHNNTHHPFPHPSSGPIGPSKKRILAGPTASDRHELLEMTKSYTL 431

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
FB|FBgn0038578	642	MED17 "Mediator complex subuni	0.567	0.071	0.608	4.4e-19
ZFIN|ZDB-GENE-040302-1	643	med17 "mediator complex subuni	0.654	0.082	0.355	6.7e-06
MGI|MGI:2182585	649	Med17 "mediator complex subuni	0.691	0.086	0.343	1.4e-05
RGD|1311120	649	Med17 "mediator complex subuni	0.691	0.086	0.343	1.4e-05
UNIPROTKB|E2RSF3	651	MED17 "Uncharacterized protein	0.654	0.081	0.355	1.4e-05
UNIPROTKB|F1NY10	643	MED17 "Mediator of RNA polymer	0.506	0.063	0.409	2.2e-05
UNIPROTKB|Q5ZID1	643	MED17 "Mediator of RNA polymer	0.506	0.063	0.409	2.2e-05
UNIPROTKB|Q5BIR6	651	MED17 "Mediator of RNA polymer	0.654	0.081	0.338	2.2e-05
UNIPROTKB|F1STK7	651	MED17 "Uncharacterized protein	0.654	0.081	0.338	2.2e-05
UNIPROTKB|Q9NVC6	651	MED17 "Mediator of RNA polymer	0.654	0.081	0.355	4.5e-05

FB|FBgn0038578 MED17 "Mediator complex subunit 17" [Drosophila melanogaster (taxid:7227)]

 Score = 175 (66.7 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
 Identities = 28/46 (60%), Positives = 39/46 (84%)

Query:    35 VHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
             VH+KN+HHPFPHP+S P+GP+K+R +AGP  ADR  LL++TKS+ +
Sbjct:   374 VHYKNSHHPFPHPASAPLGPTKKRMLAGPMAADRETLLDMTKSQTI 419

GO:0016592 "mediator complex" evidence=ISS;IDA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=ISS;IMP

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0009987 "cellular process" evidence=IMP

GO:0045498 "sex comb development" evidence=IGI

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0033613 "activating transcription factor binding" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

ZFIN|ZDB-GENE-040302-1 med17 "mediator complex subunit 17" [Danio rerio (taxid:7955)]

 Score = 75 (31.5 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query:    25 IYQLSDNTFMV---HHKNTHHP--FPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSE 78
             +Y L  N   +    HK T      PHP+S P G  KR  +AGP   D+ E+  L ++E
Sbjct:   361 LYVLEHNLHQLIREFHKQTLSSVVMPHPASAPFG-HKRLRLAGPLAYDKAEISSLQQTE 418

GO:0016592 "mediator complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:2182585 Med17 "mediator complex subunit 17" [Mus musculus (taxid:10090)]

 Score = 76 (31.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 22/64 (34%), Positives = 32/64 (50%)

Query:    22 GQE--IYQLSDNTFMV---HHKNTHHPF--PHPSSGPIGPSKRRCIAGPTGADRYELLEL 74
             GQE  +Y L  N  ++    HK T      PHP+S P G  KR  ++GP   D+ E+  +
Sbjct:   361 GQEDHLYVLEHNLHLLIREFHKQTLSSIVMPHPASAPFG-HKRMRLSGPQAFDKNEINSI 419

Query:    75 TKSE 78
               +E
Sbjct:   420 QSTE 423

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=ISO

GO:0003712 "transcription cofactor activity" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0004872 "receptor activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISO

GO:0016592 "mediator complex" evidence=ISO;ISA;IDA

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0030518 "intracellular steroid hormone receptor signaling pathway" evidence=ISO

GO:0030521 "androgen receptor signaling pathway" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046966 "thyroid hormone receptor binding" evidence=ISO

RGD|1311120 Med17 "mediator complex subunit 17" [Rattus norvegicus (taxid:10116)]

 Score = 76 (31.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 22/64 (34%), Positives = 32/64 (50%)

Query:    22 GQE--IYQLSDNTFMV---HHKNTHHPF--PHPSSGPIGPSKRRCIAGPTGADRYELLEL 74
             GQE  +Y L  N  ++    HK T      PHP+S P G  KR  ++GP   D+ E+  +
Sbjct:   361 GQEGHLYVLEHNLHLLIREFHKQTLSSIVMPHPASAPFG-HKRMRLSGPQAFDKNEINSI 419

Query:    75 TKSE 78
               +E
Sbjct:   420 QSTE 423

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA;ISO

GO:0003712 "transcription cofactor activity" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=IEA;ISO

GO:0004872 "receptor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IEA;ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA;ISO

GO:0016592 "mediator complex" evidence=IEA;ISO

GO:0019827 "stem cell maintenance" evidence=IEA;ISO

GO:0030518 "intracellular steroid hormone receptor signaling pathway" evidence=ISO

GO:0030521 "androgen receptor signaling pathway" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0046966 "thyroid hormone receptor binding" evidence=IEA;ISO

UNIPROTKB|E2RSF3 MED17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 76 (31.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query:    25 IYQLSDNTFMV---HHKNTHHPF--PHPSSGPIGPSKRRCIAGPTGADRYELLELTKSE 78
             +Y L  N  ++    HK T      PHP+S P G  KR  ++GP   D+ E+  L  SE
Sbjct:   368 LYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFG-HKRMRLSGPQAFDKNEINSLQSSE 425

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|F1NY10 MED17 "Mediator of RNA polymerase II transcription subunit 17" [Gallus gallus (taxid:9031)]

 Score = 73 (30.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
 Identities = 18/44 (40%), Positives = 23/44 (52%)

Query:    37 HKNTHHP--FPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSE 78
             HK T      PHP+S P G  KR  +AGP   D+ E+  L  +E
Sbjct:   377 HKQTLSSVVMPHPASAPFG-HKRMRLAGPQAFDKNEISSLQTNE 419

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

UNIPROTKB|Q5ZID1 MED17 "Mediator of RNA polymerase II transcription subunit 17" [Gallus gallus (taxid:9031)]

 Score = 73 (30.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
 Identities = 18/44 (40%), Positives = 23/44 (52%)

Query:    37 HKNTHHP--FPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSE 78
             HK T      PHP+S P G  KR  +AGP   D+ E+  L  +E
Sbjct:   377 HKQTLSSVVMPHPASAPFG-HKRMRLAGPQAFDKNEISSLQTNE 419

GO:0016592 "mediator complex" evidence=ISS

GO:0003712 "transcription cofactor activity" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0004872 "receptor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005667 "transcription factor complex" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0030518 "intracellular steroid hormone receptor signaling pathway" evidence=ISS

GO:0030521 "androgen receptor signaling pathway" evidence=ISS

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0046966 "thyroid hormone receptor binding" evidence=ISS

UNIPROTKB|Q5BIR6 MED17 "Mediator of RNA polymerase II transcription subunit 17" [Bos taurus (taxid:9913)]

 Score = 74 (31.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
 Identities = 20/59 (33%), Positives = 29/59 (49%)

Query:    25 IYQLSDNTFMV---HHKNTHHPF--PHPSSGPIGPSKRRCIAGPTGADRYELLELTKSE 78
             +Y L  N  ++    HK T      PHP+S P G  KR  ++GP   D+ E+  +  SE
Sbjct:   368 LYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFG-HKRMRLSGPQAFDKNEINSIQSSE 425

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|F1STK7 MED17 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 74 (31.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
 Identities = 20/59 (33%), Positives = 29/59 (49%)

Query:    25 IYQLSDNTFMV---HHKNTHHPF--PHPSSGPIGPSKRRCIAGPTGADRYELLELTKSE 78
             +Y L  N  ++    HK T      PHP+S P G  KR  ++GP   D+ E+  +  SE
Sbjct:   368 LYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFG-HKRMRLSGPQAFDKNEINSIQSSE 425

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|Q9NVC6 MED17 "Mediator of RNA polymerase II transcription subunit 17" [Homo sapiens (taxid:9606)]

 Score = 76 (31.8 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query:    25 IYQLSDNTFMV---HHKNTHHPF--PHPSSGPIGPSKRRCIAGPTGADRYELLELTKSE 78
             +Y L  N  ++    HK T      PHP+S P G  KR  ++GP   D+ E+  L  SE
Sbjct:   368 LYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFG-HKRMRLSGPQAFDKNEINSLQSSE 425

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=NAS

GO:0030521 "androgen receptor signaling pathway" evidence=IDA

GO:0046966 "thyroid hormone receptor binding" evidence=IDA

GO:0016592 "mediator complex" evidence=IDA

GO:0004872 "receptor activity" evidence=IDA

GO:0030518 "intracellular steroid hormone receptor signaling pathway" evidence=IDA

GO:0003712 "transcription cofactor activity" evidence=IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IDA;TAS

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0042809 "vitamin D receptor binding" evidence=NAS

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0005667 "transcription factor complex" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7PVZ2	MED17_ANOGA	No assigned EC number	0.7333	0.5555	0.0697	yes	N/A
Q9VEC1	MED17_DROME	No assigned EC number	0.6086	0.5679	0.0716	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
KOG4512|consensus	625		99.43
KOG4512|consensus	625		98.95
PF10156	467	Med17: Subunit 17 of Mediator complex; InterPro: I	92.96

>KOG4512|consensus

Probab=99.43  E-value=5.2e-14  Score=117.48  Aligned_cols=54  Identities=24%  Similarity=0.236  Sum_probs=48.4

Q ss_pred             eecCcchhhhhhcCCCCCCCCCCCCCCCCCccccccCCCccChHHHHHhhhhccC
Q psy5791          26 YQLSDNTFMVHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL   80 (81)
Q Consensus        26 y~~p~~lrE~H~qn~s~~~PhPasaP~G~kK~R~lAGP~a~dr~ei~~m~kte~L   80 (81)
                      |..-+-+||||++++|+++|||+|||||+||++ ++||+|+|+++|++|+.++|+
T Consensus       349 h~lHll~refh~~ss~~m~phpaSapfg~K~~~-l~gpma~d~n~l~~~~~s~g~  402 (625)
T KOG4512|consen  349 HMLHLLRREFHDFSSSIMKPHPASAPFGAKSCK-LEGPMAEDQNRLKKTLFSFGK  402 (625)
T ss_pred             HHHHHHHHHHHhhccccCCCCCccccccchhhh-ccCcchhhHHHHHHHHHHHHH
Confidence            344456899999999999999999999977777 999999999999999999875

>KOG4512|consensus

Probab=98.95  E-value=1.2e-10  Score=97.62  Aligned_cols=33  Identities=30%  Similarity=0.534  Sum_probs=31.3

Q ss_pred             ceeeeeecchhceeeeeecCceeeeecCcchhh
Q psy5791           2 SVNISVEAPVENIIQEISYDGQEIYQLSDNTFM   34 (81)
Q Consensus         2 ~v~isiE~~~e~~vqEi~~dG~E~y~~p~~lrE   34 (81)
                      |||||||+.||+||.||++||+|+|+||+++-|
T Consensus         4 av~isiesace~qv~evg~DGtE~y~Pp~~~Se   36 (625)
T KOG4512|consen    4 AVRISIESACEKQVHEVGEDGTEVYEPPEPESE   36 (625)
T ss_pred             ceeeehhhHHHHHHHHHccCCceeecCCCccch
Confidence            699999999999999999999999999998765

>PF10156 Med17: Subunit 17 of Mediator complex; InterPro: IPR019313 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=92.96  E-value=0.029  Score=45.24  Aligned_cols=34  Identities=21%  Similarity=0.017  Sum_probs=0.0

Q ss_pred             eeeeeecchhceeeeeecCceeeeecCcchhhhhh
Q psy5791           3 VNISVEAPVENIIQEISYDGQEIYQLSDNTFMVHH   37 (81)
Q Consensus         3 v~isiE~~~e~~vqEi~~dG~E~y~~p~~lrE~H~   37 (81)
                      .+++||++++.++||+++ |.+.|+.+++|++-=.
T Consensus        32 ~~~~l~~~i~ri~~Erg~-~~f~~lte~sL~~ei~   65 (467)
T PF10156_consen   32 DPLSLEELIERINQERGP-GSFRDLTEESLQEEIA   65 (467)
T ss_dssp             -----------------------------------
T ss_pred             CCCcHHHHHHHHHhCcCC-CCcccCCHHHHHHHHH
Confidence            368999999999999999 9999999999987543

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med17 of the Mediator complex. The Med17 subunit is located within the head domain and is essential for cell viability to the extent that a mutant strain of Saccharomyces cerevisiae (Baker's yeast) lacking it shows all RNA polymerase II-dependent transcription ceasing at non-permissive temperatures.; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3RJ1_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00