Psyllid ID: psy5892

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
MIKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAVGGQK
cccEEEEEccccEEEEEEEccccccEEEEEEcccccccccccccccccccEEEEEEEEcccccccccccEEEEEEcccEEEEEEccccEEEEEccccccccccccccccccccEEEEEEcccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccEEEEEEEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccccccccccccEEEEcccccccEEEEEcccccEEEEcccccEEEEcccccccccccccccccEEEcccccccccccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccEEEEEEcccc
ccEEEEEEEcccEEEEEEEccccccEEEEEcccccccccccccccccccccHHcccccccHHHHccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccccEcHHccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEEEHHccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccHHHHHcccccEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccHccHHHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEEccccc
mikitdiacgygfTVVATkskdknlklfgcglnsdsqlgyhdprkkgnpleLVMSFvriplpvkhpstqikhlatgRAHTIvitdnegaftfgnnsfgqcgrgivqeedyqgkwfchniadlegekimdavcgqdhtlfltesgkvyscgwgadgqtglghlnnqetpclvrgeieGERIVKLSSAVDCVLAvsdkgdvfgwgnseygqisesemqistprvlsqckgvsrivdvasggsactmlndeglvyswgygllgqgpkvsrsmkptlipstlfgqhqfnpkskvesliagpctfgaitNFGHLYMWGknqygqlglgtvedqpfplkvavggqk
mikitdiacgygfTVVATKSKDKNLKLFGCGlnsdsqlgyhDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAvsdkgdvfgwGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAVGGQK
MIKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAVGGQK
**KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYH******NPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQIS****QISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKV******TLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPL********
MIKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAVG***
MIKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAVGGQK
MIKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAV****
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MIKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAVGGQK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query340 2.2.26 [Sep-21-2011]
Q9CYF5461 Williams-Beuren syndrome yes N/A 0.982 0.724 0.483 2e-88
Q96I51464 Williams-Beuren syndrome yes N/A 0.982 0.719 0.466 8e-86
Q5RCZ7 551 RCC1 and BTB domain-conta no N/A 0.679 0.419 0.332 6e-24
O95199 551 RCC1 and BTB domain-conta no N/A 0.679 0.419 0.332 6e-24
Q99LJ7 551 RCC1 and BTB domain-conta no N/A 0.679 0.419 0.308 2e-23
Q6P798 551 RCC1 and BTB domain-conta no N/A 0.679 0.419 0.304 5e-23
Q9FN03 440 Ultraviolet-B receptor UV yes N/A 0.752 0.581 0.288 4e-22
Q8NDN9 531 RCC1 and BTB domain-conta no N/A 0.741 0.474 0.302 1e-20
Q6NXM2 531 RCC1 and BTB domain-conta no N/A 0.741 0.474 0.298 2e-20
Q5PQN1 1057 Probable E3 ubiquitin-pro no N/A 0.641 0.206 0.325 4e-20
>sp|Q9CYF5|WBS16_MOUSE Williams-Beuren syndrome chromosomal region 16 protein homolog OS=Mus musculus GN=Wbscr16 PE=2 SV=1 Back     alignment and function desciption
 Score =  326 bits (835), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 165/341 (48%), Positives = 231/341 (67%), Gaps = 7/341 (2%)

Query: 3   KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRK-KGNPLELVMSFVRIPL 61
           KI+  ACGYGFT++++K+KD   K++G GLN DSQLG+H  RK K    E V+    +PL
Sbjct: 105 KISSAACGYGFTLLSSKTKDVT-KVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVPL 163

Query: 62  PVKHP-STQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIA 120
           P+  P  T++  ++ GRAH++V+TD EG F+ GNNS GQCGR +V++E Y      H + 
Sbjct: 164 PLDRPQETKVLQVSCGRAHSLVLTDREGVFSMGNNSHGQCGRKVVEDEVYSESHKVHRMQ 223

Query: 121 DLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERI 180
           D +G+ ++  VCGQDH+LFLT+ G+VYSCGWGADGQTGLGH N   TP  + G++ G  +
Sbjct: 224 DFDGQ-VVQVVCGQDHSLFLTDKGEVYSCGWGADGQTGLGHYNITSTPSKLGGDLAGVTV 282

Query: 181 VKLSSAVDCVLAVSDKGDVFGWGNSEYGQISE--SEMQISTPRVLSQCKGVSRIVDVASG 238
           V++++  DC LA+S  G VFGWGNSEY Q++      Q++ PR L    GV ++  VA G
Sbjct: 283 VQVATYGDCCLALSADGGVFGWGNSEYLQLASVTDSTQVNVPRCLP-FSGVGKVKQVACG 341

Query: 239 GSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPC 298
           G+ C +LN EG V+ WGYG+LG+GPK+  +  P +IP TLFG  +FNP+ +V  +  G  
Sbjct: 342 GTGCAVLNAEGHVFVWGYGILGKGPKLLETAIPEMIPPTLFGLTEFNPEVQVSQIRCGLS 401

Query: 299 TFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAVGGQ 339
            F A+TN G L++WGKN  G LG+G +EDQ FP +V + G+
Sbjct: 402 HFAALTNKGELFVWGKNIRGCLGIGRLEDQYFPWRVTMPGE 442

Mus musculus (taxid: 10090)
>sp|Q96I51|WBS16_HUMAN Williams-Beuren syndrome chromosomal region 16 protein OS=Homo sapiens GN=WBSCR16 PE=1 SV=2 Back     alignment and function description
>sp|Q5RCZ7|RCBT2_PONAB RCC1 and BTB domain-containing protein 2 OS=Pongo abelii GN=RCBTB2 PE=2 SV=1 Back     alignment and function description
>sp|O95199|RCBT2_HUMAN RCC1 and BTB domain-containing protein 2 OS=Homo sapiens GN=RCBTB2 PE=2 SV=1 Back     alignment and function description
>sp|Q99LJ7|RCBT2_MOUSE RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description
>sp|Q6P798|RCBT2_RAT RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function description
>sp|Q8NDN9|RCBT1_HUMAN RCC1 and BTB domain-containing protein 1 OS=Homo sapiens GN=RCBTB1 PE=2 SV=1 Back     alignment and function description
>sp|Q6NXM2|RCBT1_MOUSE RCC1 and BTB domain-containing protein 1 OS=Mus musculus GN=Rcbtb1 PE=2 SV=1 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
328713829 443 PREDICTED: Williams-Beuren syndrome chro 0.973 0.747 0.553 1e-107
262091810431 CG3862-PA-like protein [Plutella xyloste 0.982 0.774 0.542 1e-102
357608659388 hypothetical protein KGM_00601 [Danaus p 0.982 0.860 0.539 1e-101
321478161 454 hypothetical protein DAPPUDRAFT_304656 [ 0.973 0.729 0.526 4e-97
345494702 449 PREDICTED: LOW QUALITY PROTEIN: Williams 0.976 0.739 0.510 1e-94
332024532440 Williams-Beuren syndrome chromosomal reg 0.967 0.747 0.513 4e-94
383864560 443 PREDICTED: Williams-Beuren syndrome chro 0.979 0.751 0.508 6e-94
66519286 443 PREDICTED: Williams-Beuren syndrome chro 0.979 0.751 0.502 3e-93
350406684 443 PREDICTED: Williams-Beuren syndrome chro 0.982 0.753 0.510 5e-93
340721370 443 PREDICTED: LOW QUALITY PROTEIN: Williams 0.979 0.751 0.511 5e-93
>gi|328713829|ref|XP_001950141.2| PREDICTED: Williams-Beuren syndrome chromosomal region 16 protein homolog [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/338 (55%), Positives = 259/338 (76%), Gaps = 7/338 (2%)

Query: 3   KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
           KI D+ACGYGFTV A +S     KLFGCGLN+DSQ+GYHDPRK G PL L+++ V I LP
Sbjct: 91  KIKDLACGYGFTVYAVESN--QYKLFGCGLNTDSQIGYHDPRK-GYPLGLILATVPIQLP 147

Query: 63  VKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADL 122
           +K P+T+IK +A GRAHT+V+T+ EG +  G+N +GQCGR I++ ED+      +NI   
Sbjct: 148 LKEPNTKIKAVAAGRAHTLVLTNTEGVYALGSNCYGQCGRKIIENEDFSKLRNVNNITLD 207

Query: 123 EGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIVK 182
           +G  I   +CGQDH+LF+T++GKVYSCGWGADGQTGLGH NN+  P +V G+I+GE+IVK
Sbjct: 208 DG--ISKIICGQDHSLFITKAGKVYSCGWGADGQTGLGHYNNESQPTIVEGDIKGEKIVK 265

Query: 183 LSSAVDCVLAVSDKGDVFGWGNSEYGQI--SESEMQISTPRVLSQCKGVSRIVDVASGGS 240
           + S+ DCVLA++D+G+VFGWGNSEYGQ+     + Q++ PR L   KG+ +I D+ + GS
Sbjct: 266 VVSSADCVLALNDQGEVFGWGNSEYGQLLLDSDKYQVNKPRKLPLSKGMGKITDIGATGS 325

Query: 241 ACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTF 300
           AC  LNDEG+V+ WG+G+LG+GP++++S +PT IPS LFG++Q+NP+++V+S+ +     
Sbjct: 326 ACIALNDEGVVFVWGFGILGKGPEMNQSREPTPIPSILFGRNQYNPETRVKSVYSSVFHM 385

Query: 301 GAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAVGG 338
            AIT+ G+LY WGKN++GQLGLG  +DQ FPL+V+VG 
Sbjct: 386 AAITSEGNLYTWGKNKWGQLGLGHTKDQYFPLQVSVGA 423

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|262091810|gb|ACY25397.1| CG3862-PA-like protein [Plutella xylostella] Back     alignment and taxonomy information
>gi|357608659|gb|EHJ66084.1| hypothetical protein KGM_00601 [Danaus plexippus] Back     alignment and taxonomy information
>gi|321478161|gb|EFX89119.1| hypothetical protein DAPPUDRAFT_304656 [Daphnia pulex] Back     alignment and taxonomy information
>gi|345494702|ref|XP_001604296.2| PREDICTED: LOW QUALITY PROTEIN: Williams-Beuren syndrome chromosomal region 16 protein homolog [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|332024532|gb|EGI64730.1| Williams-Beuren syndrome chromosomal region 16 protein-like protein [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383864560|ref|XP_003707746.1| PREDICTED: Williams-Beuren syndrome chromosomal region 16 protein homolog [Megachile rotundata] Back     alignment and taxonomy information
>gi|66519286|ref|XP_395025.2| PREDICTED: Williams-Beuren syndrome chromosomal region 16 protein homolog [Apis mellifera] Back     alignment and taxonomy information
>gi|350406684|ref|XP_003487848.1| PREDICTED: Williams-Beuren syndrome chromosomal region 16 protein homolog [Bombus impatiens] Back     alignment and taxonomy information
>gi|340721370|ref|XP_003399094.1| PREDICTED: LOW QUALITY PROTEIN: Williams-Beuren syndrome chromosomal region 16 protein homolog [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
RGD|1307558461 Wbscr16 "Williams-Beuren syndr 0.982 0.724 0.486 5.3e-88
MGI|MGI:2137600461 Wbscr16 "Williams-Beuren syndr 0.982 0.724 0.483 6e-87
UNIPROTKB|E1BIS5464 WBSCR16 "Uncharacterized prote 0.982 0.719 0.475 1.4e-85
UNIPROTKB|F1RJL0470 WBSCR16 "Uncharacterized prote 0.982 0.710 0.466 1.7e-84
UNIPROTKB|Q96I51464 WBSCR16 "Williams-Beuren syndr 0.982 0.719 0.466 2.7e-84
UNIPROTKB|F1Q1C6465 WBSCR16 "Uncharacterized prote 0.982 0.718 0.457 1.7e-82
UNIPROTKB|F1P3N0454 WBSCR16 "Uncharacterized prote 0.979 0.733 0.466 8.5e-81
WB|WBGene00012370404 W09G3.7 [Caenorhabditis elegan 0.917 0.772 0.332 7.5e-41
UNIPROTKB|O95199 551 RCBTB2 "RCC1 and BTB domain-co 0.676 0.417 0.338 1.9e-27
MGI|MGI:1917200 551 Rcbtb2 "regulator of chromosom 0.679 0.419 0.320 1.1e-26
RGD|1307558 Wbscr16 "Williams-Beuren syndrome chromosome region 16" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 166/341 (48%), Positives = 232/341 (68%)

Query:     3 KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRK-KGNPLELVMSFVRIPL 61
             KI+  ACGYGFT++++K+KD   K++G GLN DSQLG+H  RK K    E V+    +PL
Sbjct:   105 KISSAACGYGFTLLSSKTKDVT-KVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVPL 163

Query:    62 PVKHPS-TQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIA 120
             P+  P  T++  ++ GRAH++V+TD EG F+ GNN+ GQCGR +V++E Y      H + 
Sbjct:   164 PLDRPQETKVLQVSCGRAHSLVLTDREGVFSMGNNAHGQCGRKVVEDEVYSESHKVHRMQ 223

Query:   121 DLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERI 180
             D EG+ ++  VCGQDH+LFLT+ G+VYSCGWGADGQTGLGH N   TP  + G++ G  +
Sbjct:   224 DFEGQ-VVQVVCGQDHSLFLTDKGEVYSCGWGADGQTGLGHYNITSTPSKLGGDLAGVTV 282

Query:   181 VKLSSAVDCVLAVSDKGDVFGWGNSEYGQISE--SEMQISTPRVLSQCKGVSRIVDVASG 238
             V++++  DC LA+S  G VFGWGNSEY Q++      Q++ PR L    GV ++  VA G
Sbjct:   283 VQVATYGDCCLALSADGGVFGWGNSEYLQLASVTDSTQVNVPRCLP-FSGVGKVKQVACG 341

Query:   239 GSACTMLNDEGLVYSWGYGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPC 298
             G+ C +LN+EG V+ WGYG+LG+GP +S +  P +IP TLFG  +FNP+ KV  +  G  
Sbjct:   342 GTGCAILNEEGHVFVWGYGILGKGPNLSETALPEMIPPTLFGLTEFNPEVKVSQIRCGLS 401

Query:   299 TFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAVGGQ 339
              F A+TN G L++WGKN  G LG+G +EDQ FP +V + G+
Sbjct:   402 HFAALTNKGELFVWGKNIRGCLGIGRLEDQYFPWRVTMPGE 442
GO:0005739 "mitochondrion" evidence=IEA;ISO
MGI|MGI:2137600 Wbscr16 "Williams-Beuren syndrome chromosome region 16 homolog (human)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BIS5 WBSCR16 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RJL0 WBSCR16 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q96I51 WBSCR16 "Williams-Beuren syndrome chromosomal region 16 protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q1C6 WBSCR16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3N0 WBSCR16 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00012370 W09G3.7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|O95199 RCBTB2 "RCC1 and BTB domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1917200 Rcbtb2 "regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96I51WBS16_HUMANNo assigned EC number0.46620.98230.7198yesN/A
Q9CYF5WBS16_MOUSENo assigned EC number0.48380.98230.7245yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-23
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 6e-21
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-19
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-16
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-06
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 4e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 5e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 6e-04
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 8e-04
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 8e-04
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  100 bits (251), Expect = 1e-23
 Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 35/293 (11%)

Query: 3   KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
           ++  +ACG+  +V+ T   D  +  +G     +   G +   +K +             P
Sbjct: 177 RVVKLACGWEISVILTA--DGRVYSWGTFRCGELGQGSYKNSQKTS---------IQFTP 225

Query: 63  VKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADL 122
           +K P   I  LA G  H I +T+    + +G+N  GQ GR   +            + D 
Sbjct: 226 LKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVL-----VGDP 280

Query: 123 EGEKIMDAV-CGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLV-----RGEIE 176
              + +  V CG+DH+L L E G++Y+ G    GQ  LG  ++ E   L      +  + 
Sbjct: 281 FAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQ--LGAGSDGEIGALTTKPNYKQLLS 338

Query: 177 GERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQI---SESEMQISTPRVLSQCKGVSRIV 233
           G  I  +S+     L +   G ++ +G  + GQ+    E  + +STP  LS    + ++ 
Sbjct: 339 GVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQV- 397

Query: 234 DVASGGSACTML-NDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQH 282
              + G+   +   D+G VYSWG   +G LG GPK +  + PTLI   L   H
Sbjct: 398 ---ACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGH 447

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 340
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427|consensus443 100.0
KOG1427|consensus443 100.0
KOG0783|consensus 1267 99.95
KOG0783|consensus 1267 99.91
KOG1428|consensus 3738 99.85
KOG1428|consensus 3738 99.85
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.29
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.27
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.22
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.21
KOG0941|consensus 850 98.95
KOG0941|consensus 850 98.85
KOG3669|consensus 705 96.02
KOG0315|consensus311 94.89
KOG3669|consensus 705 94.74
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 94.6
KOG0943|consensus 3015 94.25
KOG0943|consensus 3015 94.1
KOG1900|consensus 1311 92.78
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 92.68
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 90.21
KOG0646|consensus476 90.05
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 88.57
KOG0291|consensus 893 82.12
KOG4693|consensus392 80.88
KOG1408|consensus 1080 80.38
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=5.4e-47  Score=333.15  Aligned_cols=316  Identities=25%  Similarity=0.391  Sum_probs=243.7

Q ss_pred             cceeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCC---C---CC---CCCceeeeeeeecCCCCC-CCCCCeE
Q psy5892           2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDP---R---KK---GNPLELVMSFVRIPLPVK-HPSTQIK   71 (340)
Q Consensus         2 ~~i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~---~---~~---~~~~~~~~~p~~v~~~~~-~~~~~i~   71 (340)
                      -.|.+++||..|+++|  +.||.  ||+||.|..|+||+..-   .   ..   ....+....|..++.... ....+++
T Consensus       104 ~~i~~~acGg~hsl~l--d~Dg~--lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv  179 (476)
T COG5184         104 ASIIKIACGGNHSLGL--DHDGN--LYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVV  179 (476)
T ss_pred             eeeEEeecCCceEEee--cCCCC--EEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheE
Confidence            3689999999999999  79999  99999999999998761   0   00   001122334444444111 1144899


Q ss_pred             EEEeCCCeEEEEeCCCcEEEEecCCCCCccCCCCCCccc-cCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEE
Q psy5892          72 HLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDY-QGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCG  150 (340)
Q Consensus        72 ~i~~g~~~~~~lt~~g~l~~~G~n~~gqlg~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG  150 (340)
                      +++||++++++|+++|+||+||....+.++.+...+... .....|-.++   ...|+++++|.+|.++|+++|++|.||
T Consensus       180 ~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~G  256 (476)
T COG5184         180 KLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWG  256 (476)
T ss_pred             EeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEec
Confidence            999999999999999999999999999988885444332 2222333333   478999999999999999999999999


Q ss_pred             eCCCCCCCCCCCCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCCC-----CccccCceEeec
Q psy5892         151 WGADGQTGLGHLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISES-----EMQISTPRVLSQ  225 (340)
Q Consensus       151 ~n~~gqlg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~~-----~~~~~~p~~i~~  225 (340)
                      +|..||||....+....+.++...+.-..|..|+||.+|++||+++|++|+||.|.+||||..     ......|.....
T Consensus       257 s~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~  336 (476)
T COG5184         257 SNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQL  336 (476)
T ss_pred             CCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeecccccccc
Confidence            999999999988887777777766666668999999999999999999999999999999985     112222332222


Q ss_pred             ccCcccEEEEEecCceEEEEcCCCcEEEEcCCCCCCCCCCcc----ccCceeecccccCCcccCCCCCeEEEEccCCceE
Q psy5892         226 CKGVSRIVDVASGGSACTMLNDEGLVYSWGYGLLGQGPKVSR----SMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFG  301 (340)
Q Consensus       226 ~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~g~~g~~~~~~~----~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~  301 (340)
                       .....|..+++|..|+++|..+|.||+||++..++.....+    ...|..++          ...++.+++||..|.+
T Consensus       337 -~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls----------~~~~~~~v~~gt~~~~  405 (476)
T COG5184         337 -LSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS----------VAIKLEQVACGTHHNI  405 (476)
T ss_pred             -CCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCccccc----------cccceEEEEecCccce
Confidence             33456999999999999999999999999655554332221    22222222          1257999999999999


Q ss_pred             EEecCCcEEEEeCCCCCcccCCCCC-CCCccEEee
Q psy5892         302 AITNFGHLYMWGKNQYGQLGLGTVE-DQPFPLKVA  335 (340)
Q Consensus       302 ~lt~~g~vy~wG~n~~GqLG~g~~~-~~~~p~~v~  335 (340)
                      +.+++|+||+||++.+||||.|+.+ +...|+.++
T Consensus       406 ~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~  440 (476)
T COG5184         406 ARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIR  440 (476)
T ss_pred             eeccCCceEEecCchhhhccCCchhhhcccccccc
Confidence            9999999999999999999999775 677777776

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427|consensus Back     alignment and domain information
>KOG1427|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG1428|consensus Back     alignment and domain information
>KOG1428|consensus Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>KOG3669|consensus Back     alignment and domain information
>KOG0315|consensus Back     alignment and domain information
>KOG3669|consensus Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0943|consensus Back     alignment and domain information
>KOG0943|consensus Back     alignment and domain information
>KOG1900|consensus Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG0646|consensus Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG0291|consensus Back     alignment and domain information
>KOG4693|consensus Back     alignment and domain information
>KOG1408|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 2e-23
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 2e-17
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 4e-23
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 6e-17
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 5e-23
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 5e-17
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 5e-23
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 5e-17
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 1e-13
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 6e-12
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 4e-10
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 5e-06
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 4e-10
1a12_A 413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 5e-06
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 7e-08
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 4e-07
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 3e-04
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure 
Iteration: 1

 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 141/277 (50%), Gaps = 21/277 (7%)
Query: 63  VKHPSTQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADL 122
           V  P  ++  ++ G +H++ +   +   ++G    GQ G G  ++     +     ++ L
Sbjct: 1   VTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQ-----LSAL 55
Query: 123 EGEKIMDAVCGQDHTLFLTESG-KVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIV 181
           +G +I+   CG DHT+  ++SG +VYS GWG  G+ G G+ ++  TP  ++  + G RI 
Sbjct: 56  DGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKA-LHGIRIK 114
Query: 182 KLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQIS-TPRVLSQCKGVSRIVDVASGGS 240
           +++      LAV+ +G+V  WG ++ GQ+   + + S  P+ +   +G+ RI  VA+G  
Sbjct: 115 QIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKXVAAGAE 173
Query: 241 ACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGP 297
               + ++G +Y WG   YG LG G +  R + P  + ST           K   +  G 
Sbjct: 174 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDR-LVPERVTST--------GGEKXSXVACGW 224
Query: 298 CTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV 334
               +++  G LY +G ++YGQLG G +ED   P K+
Sbjct: 225 RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKL 261
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-63
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-59
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-51
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-50
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-32
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-60
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-57
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-48
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-29
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-16
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 9e-06
3of7_A473 Regulator of chromosome condensation; beta-propell 8e-59
3of7_A 473 Regulator of chromosome condensation; beta-propell 2e-55
3of7_A 473 Regulator of chromosome condensation; beta-propell 2e-47
3of7_A473 Regulator of chromosome condensation; beta-propell 3e-44
3of7_A473 Regulator of chromosome condensation; beta-propell 5e-19
3of7_A 473 Regulator of chromosome condensation; beta-propell 4e-06
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 6e-56
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 5e-52
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 5e-47
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 9e-47
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 5e-41
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-29
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-16
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 5e-14
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-52
3mvd_K423 Regulator of chromosome condensation; protein-DNA 6e-51
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 3e-45
3mvd_K423 Regulator of chromosome condensation; protein-DNA 5e-40
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-31
3mvd_K423 Regulator of chromosome condensation; protein-DNA 9e-19
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 4e-13
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 7e-31
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-28
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-21
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-14
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-08
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-04
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  205 bits (523), Expect = 4e-63
 Identities = 87/337 (25%), Positives = 146/337 (43%), Gaps = 35/337 (10%)

Query: 3   KITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLP 62
           +I  + CG   TV  ++S    ++++  G     +LG+      GN  +     +  PLP
Sbjct: 69  QIVSVTCGADHTVAYSQS---GMEVYSWGWGDFGRLGH------GNSSD-----LFTPLP 114

Query: 63  VKHPS-TQIKHLATGRAHTIVITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIAD 121
           +K     +IK +A G +H + +T      ++G N  GQ G G     D +       I  
Sbjct: 115 IKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-----DTEDSLVPQKIQA 169

Query: 122 LEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGHLNNQETPCLVRGEIEGERIV 181
            EG +I     G +HT  +TE G +Y  GWG  G  GLG   ++  P  V     GE++ 
Sbjct: 170 FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTS-TGGEKMS 228

Query: 182 KLSSAVDCVLAVSDKGDVFGWGNSEYGQISESEMQ-ISTPRVLSQCKGVSRIVDVASGGS 240
            ++      ++VS  G ++ +G S+YGQ+   +++    P  L      S I  ++ G  
Sbjct: 229 MVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGWR 287

Query: 241 ACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGP 297
               L  +G +Y WG   +G +G G  + +   P  +              KV  +  G 
Sbjct: 288 HTMALTSDGKLYGWGWNKFGQVGVGNNLDQC-SPVQVRFP--------DDQKVVQVSCGW 338

Query: 298 CTFGAITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKV 334
               A+T   +++ WG+   GQLG+G   D+ FP  +
Sbjct: 339 RHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKII 375
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A 473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.93
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.82
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.68
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.59
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 93.12
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 92.81
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 92.69
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 92.49
3jrp_A379 Fusion protein of protein transport protein SEC13 86.23
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 84.62
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 83.59
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 82.62
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 82.25
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 82.22
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 82.17
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 81.06
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=2.6e-62  Score=451.90  Aligned_cols=305  Identities=26%  Similarity=0.476  Sum_probs=265.3

Q ss_pred             ceeEEeecCCeEEEEEecCC-CCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEE
Q psy5892           3 KITDIACGYGFTVVATKSKD-KNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTI   81 (340)
Q Consensus         3 ~i~~v~~G~~~~~~l~~~~d-g~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~   81 (340)
                      +|++|+||..|+++|+  +| |+  ||+||.|.+||||.+....       ...|+++....   ..+|++|+||..|++
T Consensus        69 ~i~~va~G~~ht~al~--~~gg~--v~~wG~n~~GqLG~g~~~~-------~~~p~~v~~l~---~~~i~~ia~G~~h~~  134 (406)
T 4d9s_A           69 QIVSVTCGADHTVAYS--QSGME--VYSWGWGDFGRLGHGNSSD-------LFTPLPIKALH---GIRIKQIACGDSHCL  134 (406)
T ss_dssp             CEEEEEECSSEEEEEE--TTTTE--EEEEECCGGGTTCSSSCCC-------EEEEEECGGGT---TCCEEEEEECSSEEE
T ss_pred             CEEEEEeCcceEEEEE--CCCCE--EEEEcCCCCcCCCCCCCCc-------cccceEecccC---CCCEEEEEEChhheE
Confidence            7999999999999994  55 48  9999999999999988643       36777777654   679999999999999


Q ss_pred             EEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCCC
Q psy5892          82 VITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGH  161 (340)
Q Consensus        82 ~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~  161 (340)
                      +|+++|+||+||.|.+||||.+....     ...|..+..+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+.
T Consensus       135 alt~~G~v~~wG~n~~GqLG~g~~~~-----~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~  209 (406)
T 4d9s_A          135 AVTMEGEVQSWGRNQNGQLGLGDTED-----SLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGD  209 (406)
T ss_dssp             EEETTSCEEEEECCTTSTTCSSSCCC-----EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS
T ss_pred             EEcCCCcEEEeCCCCCccCCCCCCCC-----cccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCC
Confidence            99999999999999999999986554     2456667777778999999999999999999999999999999999999


Q ss_pred             CCCeeeceeecccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCC-CCccccCceEeecccCcccEEEEEecCc
Q psy5892         162 LNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISE-SEMQISTPRVLSQCKGVSRIVDVASGGS  240 (340)
Q Consensus       162 ~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~-~~~~~~~p~~i~~~~~~~~i~~i~~g~~  240 (340)
                      ......|.++. .+...+|++|+||.+|+++|+++|+||+||.|.+||||. .......|.+++.+ ...+|++|+||.+
T Consensus       210 ~~~~~~p~~v~-~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~-~~~~v~~i~~G~~  287 (406)
T 4d9s_A          210 RTDRLVPERVT-STGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEAL-SNSFISQISGGWR  287 (406)
T ss_dssp             SCCEEEEEECC-CSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGG-TTSCEEEEEECSS
T ss_pred             CCCcCccEEec-ccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEeccc-CCCCEEEEEecCC
Confidence            88888999887 566679999999999999999999999999999999999 56667778888763 3568999999999


Q ss_pred             eEEEEcCCCcEEEEc---CCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceEEEecCCcEEEEeCCCC
Q psy5892         241 ACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQY  317 (340)
Q Consensus       241 ~~~~lt~~g~v~~~G---~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~  317 (340)
                      |+++|+++|+||+||   +||||.+... ....|.+++.+        ...+|++|+||.+|++||+++|+||+||+|.+
T Consensus       288 hs~alt~~G~v~~wG~n~~GqLG~g~~~-~~~~p~~v~~~--------~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~  358 (406)
T 4d9s_A          288 HTMALTSDGKLYGWGWNKFGQVGVGNNL-DQCSPVQVRFP--------DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN  358 (406)
T ss_dssp             EEEEEETTSCEEEEECCTTSTTCSSSSS-CEEEEEEECCG--------GGCCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred             EEEEEcCCCeEEEeeCCCCCCCCCCCCC-CCccCEEEecc--------CCCcEEEEEeCCCeEEEEeCCCCEEEecCCCC
Confidence            999999999999999   5666666432 34456665432        24689999999999999999999999999999


Q ss_pred             CcccCCCCCCCCccEEeecC
Q psy5892         318 GQLGLGTVEDQPFPLKVAVG  337 (340)
Q Consensus       318 GqLG~g~~~~~~~p~~v~~~  337 (340)
                      ||||+|+..++..|++|+..
T Consensus       359 GqLG~g~~~~~~~P~~v~~l  378 (406)
T 4d9s_A          359 GQLGIGESVDRNFPKIIEAL  378 (406)
T ss_dssp             STTCSSSCCCEEEEEECGGG
T ss_pred             CccCCCCCCCCcCCEEeeee
Confidence            99999999999999998743
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 340
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-22
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-14
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-12
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-04
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-09
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.9 bits (229), Expect = 9e-22
 Identities = 73/379 (19%), Positives = 107/379 (28%), Gaps = 89/379 (23%)

Query: 26  KLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTIVITD 85
            +   G     QLG       G  +        + +P       +     G  HT+ ++ 
Sbjct: 16  LVLTLGQGDVGQLGL------GENVMERKKPALVSIP-----EDVVQAEAGGMHTVCLSK 64

Query: 86  NEGAFTFGNNSFGQCGRGIVQEEDYQGKWFC----------------------------- 116
           +   ++FG N  G  GR    E                                      
Sbjct: 65  SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 124

Query: 117 -------------------HNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQT 157
                                +       ++    G DH + LT  G +Y+ G G  GQ 
Sbjct: 125 SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL 184

Query: 158 GLG---------------HLNNQETPCLVRGEIEGERIVKLSSAVDCVLAVSDKGDVFGW 202
           G                  L  +      RG     R            A+S +G V+G+
Sbjct: 185 GRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGF 244

Query: 203 GNSEYGQ--ISESEMQISTPRVLSQCKGVSRIVDVASGGSACTMLNDEGLVYSWGY---G 257
           G S Y Q     +E       + S        V  + G      ++ EG  YS G    G
Sbjct: 245 GLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYG 304

Query: 258 LLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFGAITNFGHLYMWGKNQY 317
            LG G        PTLI               V S+  G     A+T  G ++ WG    
Sbjct: 305 RLGLGEGAEEKSIPTLISRL----------PAVSSVACGASVGYAVTKDGRVFAWGMGTN 354

Query: 318 GQLGLGTVEDQPFPLKVAV 336
            QLG G  ED   P+++  
Sbjct: 355 YQLGTGQDEDAWSPVEMMG 373
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.54
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.85
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 86.92
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-52  Score=379.78  Aligned_cols=309  Identities=25%  Similarity=0.355  Sum_probs=246.9

Q ss_pred             cceeEEeecCCeEEEEEecCCCCeeEEEeecCCCCCCCCCCCCCCCCCceeeeeeeecCCCCCCCCCCeEEEEeCCCeEE
Q psy5892           2 IKITDIACGYGFTVVATKSKDKNLKLFGCGLNSDSQLGYHDPRKKGNPLELVMSFVRIPLPVKHPSTQIKHLATGRAHTI   81 (340)
Q Consensus         2 ~~i~~v~~G~~~~~~l~~~~dg~~~l~~~G~n~~gqLG~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~i~~i~~g~~~~~   81 (340)
                      .+|++|+||..|+++|  ++||+  ||+||.|.+||||.+.....       ..|.+.....   ..+|++|+||..|++
T Consensus        47 ~~i~~ia~G~~h~~al--~~~G~--vy~wG~n~~GQLG~g~~~~~-------~~~~~~~~~~---~~~i~~i~~g~~~~~  112 (401)
T d1a12a_          47 EDVVQAEAGGMHTVCL--SKSGQ--VYSFGCNDEGALGRDTSVEG-------SEMVPGKVEL---QEKVVQVSAGDSHTA  112 (401)
T ss_dssp             SCEEEEEECSSEEEEE--ETTSC--EEEEECCTTSTTCSCCCSTT-------GGGSCEECCC---CSCEEEEEECSSEEE
T ss_pred             CCeEEEEeCCCEEEEE--eCCCE--EEEEeCCCCCCCCccccccc-------cccccccccc---ccceeeeccccccee
Confidence            5799999999999999  79999  99999999999999876654       3445555554   679999999999999


Q ss_pred             EEeCCCcEEEEecCCCCCccCCCCCCccccCCceeccccccCCCceEEEEccCCeeEEEEcCCcEEEEEeCCCCCCCCCC
Q psy5892          82 VITDNEGAFTFGNNSFGQCGRGIVQEEDYQGKWFCHNIADLEGEKIMDAVCGQDHTLFLTESGKVYSCGWGADGQTGLGH  161 (340)
Q Consensus        82 ~lt~~g~l~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~  161 (340)
                      +++++|+||+||.+..++.+........    ..+..+.......|+.|+||..|+++++++|++|+||.|.++|||...
T Consensus       113 ~~~~~g~v~~wG~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~  188 (401)
T d1a12a_         113 ALTDDGRVFLWGSFRDNNGVIGLLEPMK----KSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVP  188 (401)
T ss_dssp             EEETTSCEEEEECEEETTEEEESSBBTB----CEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCG
T ss_pred             eccccccceeccccccccccccccCCcc----ccceeeeeccCCceeEEEecccceeeeecCCcccccccCCccccCCCC
Confidence            9999999999999876665544322221    122222223357899999999999999999999999999999999765


Q ss_pred             CCCe-----------eeceeec----ccccCccEEEEEecCcEEEEEeCCCCEEEEeCCCCCCCCC-CCccccCceEeec
Q psy5892         162 LNNQ-----------ETPCLVR----GEIEGERIVKLSSAVDCVLAVSDKGDVFGWGNSEYGQISE-SEMQISTPRVLSQ  225 (340)
Q Consensus       162 ~~~~-----------~~p~~~~----~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlg~-~~~~~~~p~~i~~  225 (340)
                      ....           ..|..+.    ......+|.+|+||.+|+++|+++|++|.||.|.++++|. .......+..+..
T Consensus       189 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~  268 (401)
T d1a12a_         189 ELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS  268 (401)
T ss_dssp             GGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGG
T ss_pred             ccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCeEeeecccceecccccccccceecccccc
Confidence            3211           1222221    1234457999999999999999999999999999999998 4444445555543


Q ss_pred             c-cCcccEEEEEecCceEEEEcCCCcEEEEc---CCCCCCCCCCccccCceeecccccCCcccCCCCCeEEEEccCCceE
Q psy5892         226 C-KGVSRIVDVASGGSACTMLNDEGLVYSWG---YGLLGQGPKVSRSMKPTLIPSTLFGQHQFNPKSKVESLIAGPCTFG  301 (340)
Q Consensus       226 ~-~~~~~i~~i~~g~~~~~~lt~~g~v~~~G---~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~  301 (340)
                      . .....++.+++|..|+++++++|+||+||   +|++|.+........|..++.          ...|++|+||.+|++
T Consensus       269 ~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~~----------~~~i~~Is~G~~hs~  338 (401)
T d1a12a_         269 FKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR----------LPAVSSVACGASVGY  338 (401)
T ss_dssp             GCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS----------SSSEEEEEECSSEEE
T ss_pred             ccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCEEcCC----------CCCeEEEEeeCCEEE
Confidence            2 33567999999999999999999999999   467777766555666666654          257999999999999


Q ss_pred             EEecCCcEEEEeCCCCCcccCCCCCCCCccEEeecCC
Q psy5892         302 AITNFGHLYMWGKNQYGQLGLGTVEDQPFPLKVAVGG  338 (340)
Q Consensus       302 ~lt~~g~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~  338 (340)
                      ||+++|+||+||+|.+||||+|++++...|++|..+.
T Consensus       339 alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~  375 (401)
T d1a12a_         339 AVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQ  375 (401)
T ss_dssp             EEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTT
T ss_pred             EEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccC
Confidence            9999999999999999999999999999999987654
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure