Psyllid ID: psy6473

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60-
MEFKLQTLFISETIMQLNEEDEAGSSMTGGDSPLTARTQRLERVAQALAHSQEELRRLVKY
cccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHc
ccEEEEEEEEEHHHHHEccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHcc
MEFKLQTLFISETIMQLneedeagssmtggdspltARTQRLERVAQALAHSQEELRRLVKY
MEFKLQTLFISETIMQLNEedeagssmtggdSPLTARTQRLERVAQALAhsqeelrrlvky
MEFKLQTLFISETIMQLNEEDEAGSSMTGGDSPLTARTQRLERVAQALAHSQEELRRLVKY
*******LFI***************************************************
**FKLQTLF**************************ARTQRLERVAQALAHSQEE*RRL***
MEFKLQTLFISETIMQLNEE**********DSPLTARTQRLERVAQALAHSQEELRRLVKY
*EFKLQTLFISETIMQLN*********************RLERVAQALAHSQEELRRLVKY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEFKLQTLFISETIMQLNEEDEAGSSMTGGDSPLTARTQRLERVAQALAHSQEELRRLVKY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query61
24582308 1201 Liprin-alpha, isoform A [Drosophila mela 0.557 0.028 0.8 1e-05
442626414 1214 Liprin-alpha, isoform E [Drosophila mela 0.557 0.028 0.8 1e-05
442626412 1205 Liprin-alpha, isoform D [Drosophila mela 0.557 0.028 0.8 1e-05
195155717 1197 GL25785 [Drosophila persimilis] gi|19411 0.557 0.028 0.8 1e-05
195030644 1188 GH10707 [Drosophila grimshawi] gi|193904 0.540 0.027 0.818 1e-05
195338730 1201 GM16210 [Drosophila sechellia] gi|194129 0.557 0.028 0.8 1e-05
442626410 1158 Liprin-alpha, isoform C [Drosophila mela 0.557 0.029 0.8 1e-05
195385402 1194 GJ12463 [Drosophila virilis] gi|19414785 0.557 0.028 0.8 1e-05
198476595 1197 GA10833 [Drosophila pseudoobscura pseudo 0.557 0.028 0.8 1e-05
195438294 1209 GK24804 [Drosophila willistoni] gi|19416 0.557 0.028 0.8 1e-05
>gi|24582308|ref|NP_609067.2| Liprin-alpha, isoform A [Drosophila melanogaster] gi|24582310|ref|NP_723208.1| Liprin-alpha, isoform B [Drosophila melanogaster] gi|22945797|gb|AAF52430.2| Liprin-alpha, isoform A [Drosophila melanogaster] gi|22945798|gb|AAN10596.1| Liprin-alpha, isoform B [Drosophila melanogaster] gi|28416351|gb|AAO42648.1| LD33094p [Drosophila melanogaster] gi|220947300|gb|ACL86193.1| Liprin-alpha-PA [synthetic construct] gi|220956770|gb|ACL90928.1| Liprin-alpha-PA [synthetic construct] Back     alignment and taxonomy information
 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 30/35 (85%), Gaps = 1/35 (2%)

Query: 24  GSSMTGGD-SPLTARTQRLERVAQALAHSQEELRR 57
           G S +GG  SPLTAR+ RLERVAQALAHSQEELRR
Sbjct: 737 GDSSSGGAASPLTARSMRLERVAQALAHSQEELRR 771

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|442626414|ref|NP_001260155.1| Liprin-alpha, isoform E [Drosophila melanogaster] gi|440213455|gb|AGB92691.1| Liprin-alpha, isoform E [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|442626412|ref|NP_001260154.1| Liprin-alpha, isoform D [Drosophila melanogaster] gi|440213454|gb|AGB92690.1| Liprin-alpha, isoform D [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195155717|ref|XP_002018747.1| GL25785 [Drosophila persimilis] gi|194114900|gb|EDW36943.1| GL25785 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|195030644|ref|XP_001988178.1| GH10707 [Drosophila grimshawi] gi|193904178|gb|EDW03045.1| GH10707 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195338730|ref|XP_002035977.1| GM16210 [Drosophila sechellia] gi|194129857|gb|EDW51900.1| GM16210 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|442626410|ref|NP_001260153.1| Liprin-alpha, isoform C [Drosophila melanogaster] gi|440213453|gb|AGB92689.1| Liprin-alpha, isoform C [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195385402|ref|XP_002051395.1| GJ12463 [Drosophila virilis] gi|194147852|gb|EDW63550.1| GJ12463 [Drosophila virilis] Back     alignment and taxonomy information
>gi|198476595|ref|XP_001357406.2| GA10833 [Drosophila pseudoobscura pseudoobscura] gi|198137769|gb|EAL34475.2| GA10833 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195438294|ref|XP_002067072.1| GK24804 [Drosophila willistoni] gi|194163157|gb|EDW78058.1| GK24804 [Drosophila willistoni] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query61
FB|FBgn0046704 1201 Liprin-alpha "Liprin-alpha" [D 0.557 0.028 0.8 1e-06
FB|FBgn0046704 Liprin-alpha "Liprin-alpha" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 126 (49.4 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 28/35 (80%), Positives = 30/35 (85%)

Query:    24 GSSMTGGD-SPLTARTQRLERVAQALAHSQEELRR 57
             G S +GG  SPLTAR+ RLERVAQALAHSQEELRR
Sbjct:   737 GDSSSGGAASPLTARSMRLERVAQALAHSQEELRR 771


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.127   0.325    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       61        61   0.00091  102 3  10 23  0.36    28
                                                     29  0.39    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  476 (51 KB)
  Total size of DFA:  87 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:04
  No. of threads or processors used:  24
  Search cpu time:  11.39u 0.06s 11.45t   Elapsed:  00:00:29
  Total cpu time:  11.39u 0.06s 11.45t   Elapsed:  00:00:33
  Start:  Thu Aug 15 13:59:04 2013   End:  Thu Aug 15 13:59:37 2013
GO:0008594 "photoreceptor cell morphogenesis" evidence=IMP
GO:0045202 "synapse" evidence=IDA
GO:0007416 "synapse assembly" evidence=IMP
GO:0048490 "anterograde synaptic vesicle transport" evidence=IMP
GO:0045467 "R7 cell development" evidence=IMP
GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP
GO:0007412 "axon target recognition" evidence=IMP
GO:0048786 "presynaptic active zone" evidence=IDA
GO:0007411 "axon guidance" evidence=IMP
GO:0048841 "regulation of axon extension involved in axon guidance" evidence=IMP
GO:0048675 "axon extension" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0043234 "protein complex" evidence=IDA
GO:0051124 "synaptic growth at neuromuscular junction" evidence=IMP
GO:0005925 "focal adhesion" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query61
cd05658 424 cd05658, M18_DAP, M18 Peptidase Aspartyl aminopept 0.004
>gnl|CDD|193534 cd05658, M18_DAP, M18 Peptidase Aspartyl aminopeptidase Back     alignment and domain information 
 Score = 32.8 bits (76), Expect = 0.004
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 5/43 (11%)

Query: 18  NEEDEAGS-SMTGGDSPLTARTQRLERVAQALAHSQEELRRLV 59
           NEE   GS S  G DSP       LER+A AL  S+EE  R +
Sbjct: 260 NEE--VGSESKQGADSPFLEDV--LERIAAALGGSREEYYRAL 298

Peptidase M18 family, Aspartyl aminopeptidase (DAP; EC 3.4.11.21) subfamily. DAP is widely distributed in bacteria and eukaryotes, but only the mammalian aspartyl aminopeptidase has been characterized to date. DAP cleaves only unblocked N-terminal acidic amino-acid residues. It is a cytosolic enzyme and is highly conserved; for example, the human enzyme has 51% identity to an aspartyl aminopeptidase-like protein in Arabidopsis thaliana. The mammalian DAP is highly selective for hydrolysis of N-terminal aspartate or glutamate residues from peptides. Unlike glutamyl aminopeptidase (M42), DAP does not cleave simple aminoaryl-arylamide substrates. Although there is lack of understanding of the function of this enzyme, it is thought to act in concert with other aminopeptidases to facilitate protein turnover because of their restricted specificities for the N-terminal aspartic and glutamic acid, which cannot be cleaved by any other aminopeptidases. The mammalian aspartyl aminopeptidase is possibly contributing to the catabolism of peptides, including those produced by the proteasome. It may also trim the N-terminus of peptides that are intended for the MHC class I system. In humans, DAP has been implicated in the the specific function of converting angiotensin II to the vasoactive angiotensin III within the brain. Length = 424

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

No hit with probability above 80.00

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query61
2do9_A115 NALP10, nacht-, LRR- and PYD-containing protein 10 87.83
>2do9_A NALP10, nacht-, LRR- and PYD-containing protein 10; apoptosis, inflammation, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
Probab=87.83  E-value=0.39  Score=29.74  Aligned_cols=34  Identities=26%  Similarity=0.320  Sum_probs=24.4

Q ss_pred             CCCCCCCCChhhHHHHHHHHHHHHHh-hcHHHHHHh
Q psy6473          24 GSSMTGGDSPLTARTQRLERVAQALA-HSQEELRRL   58 (61)
Q Consensus        24 Gss~s~~~spltart~rlerv~qala-hsqeelrr~   58 (61)
                      |||||.+.+|..|++.| .++...|. -+++||++.
T Consensus         1 ~~~~~~~~~~~ma~~~~-~~Ll~~Le~L~~eElkkF   35 (115)
T 2do9_A            1 GSSGSSGMALARANSPQ-EALLWALNDLEENSFKTL   35 (115)
T ss_dssp             CCCCCSCSCCSCCSSHH-HHHHHHHHHSCHHHHHHH
T ss_pred             CCCCcccccHHHHHHHH-HHHHHHHHHcCHHHHHHH
Confidence            78999999999999855 33444554 367788764

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00