Psyllid ID: psy676

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MVRATRHNTNANKKSGPGTPGSGKKLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWDGLIKSWRSRLHFWDPPNENGEPNSLLLDEDDDISSLDSQSVDSLPCTPIQEWKRRVRAKRESLSEDEEEDCKPLQD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHccHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvratrhntnankksgpgtpgsgkklayetdpAILLRRQKqidfgkntvgydrycsmvkredrtkdhpktppkelkYSRRAWDGLIKSWRSrlhfwdppnengepnsllldedddissldsqsvdslpctpiqEWKRRVRAKReslsedeeedckplqd
Flexible Loop (DISEMBL)
mvratrhntnankksgpgtpgsgkkLAYETDPAILLrrqkqidfgkntvgydrycsmvkredrtkdhpktppkelkysrraWDGLIKSWRSrlhfwdppneNGEPNSLLLDEDDDISsldsqsvdslpctpiqewkrrVRAKreslsedeeedckplqd
Low Complexity Region (SEG)
MVRATRHNTNANkksgpgtpgsgkkLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWDGLIKSWRSRLHFWDPPNENGEPNsllldedddissldsqsvdslPCTPIQEWKRRVRAKRESLSEDEEEDCKPLQD
Disordered region (IsUnstruct)
******************************DPAILLRRQKQIDFGKNTVGYDRYCSMV*******************SRRAWDGLIKSWRSRLHFWD**************************************************************
Disordered Region (DISOPRED)
***********************************LRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWDGLIKSWRSRLHFWDPPNENG**************************************************CKP***
Disordered Region (DISEMBL)
************************KLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWDGLIKSWRSRLHFWDPPNENGEPNSLLLDEDDDISSLDSQSVDSLPCTPIQEWK***********************
Disordered Region (DISPRO)
***************************YETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWDGLIKSWRSRLHFWDPPN***********************************************************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRATRHNTNANKKSGPGTPGSGKKLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWDGLIKSWRSRLHFWDPPNENGEPNSLLLDEDDDISSLDSQSVDSLPCTPxxxxxxxxxxxxxxxxxxxxxDCKPLQD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q9VAN6	276	Histone RNA hairpin-bindi	yes	N/A	0.459	0.264	0.643	1e-23
Q14493	270	Histone RNA hairpin-bindi	yes	N/A	0.477	0.281	0.597	3e-20
P79943	254	Histone RNA hairpin-bindi	N/A	N/A	0.591	0.370	0.505	1e-19
Q9YGP6	250	Oocyte-specific histone R	N/A	N/A	0.484	0.308	0.602	2e-19
P97440	275	Histone RNA hairpin-bindi	yes	N/A	0.471	0.272	0.592	3e-19
Q09599	367	Histone RNA hairpin-bindi	yes	N/A	0.433	0.188	0.457	9e-10

>sp|Q9VAN6|SLBP_DROME Histone RNA hairpin-binding protein OS=Drosophila melanogaster GN=Slbp PE=1 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 58/73 (79%)

Query: 29  ETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWDGLIKS 88
           E DPAIL RRQKQID+GKNT  Y+RY  MV +++RT+DHP+TP K  KYSRRA+DGL+K 
Sbjct: 189 EADPAILSRRQKQIDYGKNTAAYERYVEMVPKDERTRDHPRTPNKYGKYSRRAFDGLVKI 248

Query: 89  WRSRLHFWDPPNE 101
           WR  LH +DPP +
Sbjct: 249 WRKSLHIYDPPTQ 261

Involved in histone pre-mRNA 3' processing and couples histone mRNA production with the cell cycle. Both maternal and zygotic proteins play an essential and vital function for development.
Drosophila melanogaster (taxid: 7227)

>sp|Q14493|SLBP_HUMAN Histone RNA hairpin-binding protein OS=Homo sapiens GN=SLBP PE=1 SV=1

 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 28  YETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKD-HPKTPPKELKYSRRAWDGLI 86
           +ETD ++L+RRQKQI++GKNT+ YDRY   V R  R    HPKTP K  KYSRR+WD  I
Sbjct: 128 FETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSRRSWDQQI 187

Query: 87  KSWRSRLHFWDPPNENG 103
           K W+  LHFWDPP E G
Sbjct: 188 KLWKVALHFWDPPAEEG 204

RNA-binding protein involved in the histone pre-mRNA processing. Binds the stem-loop structure of replication-dependent histone pre-mRNAs and contributes to efficient 3'-end processing by stabilizing the complex between histone pre-mRNA and U7 small nuclear ribonucleoprotein (snRNP), via the histone downstream element (HDE). Plays an important role in targeting mature histone mRNA from the nucleus to the cytoplasm and to the translation machinery. Stabilizes mature histone mRNA and could be involved in cell-cycle regulation of histone gene expression. Involved in the mechanism by which growing oocytes accumulate histone proteins that support early embryogenesis. Binds to the 5' side of the stem-loop structure of histone pre-mRNAs.

Homo sapiens (taxid: 9606)

>sp|P79943|SLBP1_XENLA Histone RNA hairpin-binding protein OS=Xenopus laevis GN=slbp1 PE=1 SV=1

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 60/95 (63%), Gaps = 1/95 (1%)

Query: 29  ETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKD-HPKTPPKELKYSRRAWDGLIK 87
           ETDPA++ RRQKQI++GKNT+ YDRY   V R  R  + HP+TP K  KYSRR+WD  I+
Sbjct: 127 ETDPAVITRRQKQINYGKNTIAYDRYIKAVPRHLREPNVHPRTPNKFKKYSRRSWDQQIR 186

Query: 88  SWRSRLHFWDPPNENGEPNSLLLDEDDDISSLDSQ 122
            WR  LH WDPP   G      ++ED   +   SQ
Sbjct: 187 LWRIALHQWDPPAAEGSDLQPFMEEDMVCTETSSQ 221

Binds the stem-loop structure of replication-dependent histone pre-mRNAs and contributes to efficient 3' end processing by stabilizing the complex between histone pre-mRNA and U7 small nuclear ribonucleoprotein (snRNP) (By similarity). Could play an important role in targeting mature histone mRNA from the nucleus to the cytoplasm and to the translation machinery. Stabilizes mature histone mRNA and could be involved in cell-cycle regulation of histone gene expression.

Xenopus laevis (taxid: 8355)

>sp|Q9YGP6|SLBP2_XENLA Oocyte-specific histone RNA stem-loop-binding protein 2 OS=Xenopus laevis GN=slbp2 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 55/78 (70%), Gaps = 1/78 (1%)

Query: 26  LAYETDPAILLRRQKQIDFGKNTVGYDRYCSMV-KREDRTKDHPKTPPKELKYSRRAWDG 84
           + YETD A L RRQKQID+GKNTVGY  Y   V K E ++  HP+TP K  KYSRR+WD 
Sbjct: 99  VGYETDEATLHRRQKQIDYGKNTVGYQCYLQQVPKTERKSGVHPRTPNKSKKYSRRSWDM 158

Query: 85  LIKSWRSRLHFWDPPNEN 102
            IK WR  LH WDPP++N
Sbjct: 159 QIKLWRRDLHAWDPPSQN 176

Binds the stem-loop structure of replication-dependent histone mRNAs. Is associated with translationally inactive histone mRNA stored in oocytes. Could be a specific translational repressor. Not involved in histone pre-mRNA processing.

Xenopus laevis (taxid: 8355)

>sp|P97440|SLBP_MOUSE Histone RNA hairpin-binding protein OS=Mus musculus GN=Slbp PE=1 SV=1

 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 29  ETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKD-HPKTPPKELKYSRRAWDGLIK 87
           ETD ++L+RRQKQI++GKNT+ YDRY   V R  R    HP+TP K  KYSRR+WD  IK
Sbjct: 129 ETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPRTPNKFKKYSRRSWDQQIK 188

Query: 88  SWRSRLHFWDPPNENG 103
            W+  LHFWDPP E G
Sbjct: 189 LWKVALHFWDPPAEEG 204

RNA-binding protein involved in the histone pre-mRNA processing. Binds the stem-loop structure of replication-dependent histone pre-mRNAs and contributes to efficient 3'-end processing by stabilizing the complex between histone pre-mRNA and U7 small nuclear ribonucleoprotein (snRNP), via the histone downstream element (HDE). Plays an important role in targeting mature histone mRNA from the nucleus to the cytoplasm and to the translation machinery. Stabilizes mature histone mRNA and could be involved in cell-cycle regulation of histone gene expression (By similarity). Involved in the mechanism by which growing oocytes accumulate histone proteins that support early embryogenesis. Binds to the 5' side of the stem-loop structure of histone pre-mRNAs.

Mus musculus (taxid: 10090)

>sp|Q09599|SLBP_CAEEL Histone RNA hairpin-binding protein OS=Caenorhabditis elegans GN=cdl-1 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 26  LAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTK-DHPKTPPKELKYSRRAWDG 84
           L + TD A+L RR ++ID  K    Y RY S V   DR K  HP+TP K + +SRR+WD 
Sbjct: 203 LGWCTDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRDRIKGQHPRTPNKLINFSRRSWDT 262

Query: 85  LIKSWRSRLH 94
            IK W+  L+
Sbjct: 263 QIKKWKRSLY 272

Involved in histone pre-mRNA 3' processing. Required for chromosome condensation, progression of cell death and morphogenesis.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
322798088	225	hypothetical protein SINV_08829 [Solenop	0.496	0.351	0.620	7e-27
332018489	226	Histone RNA hairpin-binding protein [Acr	0.496	0.349	0.632	2e-26
307174059	225	Histone RNA hairpin-binding protein [Cam	0.496	0.351	0.620	3e-26
383851836	227	PREDICTED: uncharacterized protein LOC10	0.477	0.334	0.644	2e-25
307203819	258	Histone RNA hairpin-binding protein [Har	0.522	0.321	0.578	3e-25
193610735	336	PREDICTED: hypothetical protein LOC10016	0.672	0.318	0.543	5e-25
340726227	225	PREDICTED: hypothetical protein LOC10065	0.477	0.337	0.605	1e-24
156546144	265	PREDICTED: hypothetical protein LOC10011	0.509	0.305	0.617	2e-24
350405469	225	PREDICTED: hypothetical protein LOC10074	0.477	0.337	0.605	2e-24
110763164	222	PREDICTED: hypothetical protein LOC72674	0.477	0.342	0.605	2e-24

>gi|322798088|gb|EFZ19927.1| hypothetical protein SINV_08829 [Solenopsis invicta]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 49/79 (62%), Positives = 65/79 (82%)

Query: 24  KKLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWD 83
           + + YETDP +L RRQK+ID+GKNT+GYDRY  ++ +E RT++HP+TPPK +KYSRR WD
Sbjct: 143 RHIEYETDPVVLARRQKEIDYGKNTIGYDRYIHLIPKEQRTREHPRTPPKSIKYSRRGWD 202

Query: 84  GLIKSWRSRLHFWDPPNEN 102
           G++K WR +LH WDPP EN
Sbjct: 203 GMVKLWRKQLHSWDPPQEN 221

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018489|gb|EGI59079.1| Histone RNA hairpin-binding protein [Acromyrmex echinatior]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 65/79 (82%)

Query: 24  KKLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWD 83
           + + YETDP +L RRQK+ID+GKNT GYDRY  +V +E RT++HP+TPPK +KYSRR WD
Sbjct: 141 RHVEYETDPVVLARRQKEIDYGKNTNGYDRYIKLVPKEKRTREHPRTPPKYIKYSRRGWD 200

Query: 84  GLIKSWRSRLHFWDPPNEN 102
           G+++ WR +LHFWDPP EN
Sbjct: 201 GMMRLWRKQLHFWDPPQEN 219

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174059|gb|EFN64746.1| Histone RNA hairpin-binding protein [Camponotus floridanus]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 49/79 (62%), Positives = 65/79 (82%)

Query: 24  KKLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWD 83
           K + +ETDP +L RRQK+ID+GKNT+GYDRY  ++ +E RT++HP+TPPK +KYSRR WD
Sbjct: 143 KHIEFETDPIVLARRQKEIDYGKNTIGYDRYIQLIPKEKRTREHPRTPPKYIKYSRRGWD 202

Query: 84  GLIKSWRSRLHFWDPPNEN 102
           G++K WR +LH WDPP EN
Sbjct: 203 GMVKLWRKQLHSWDPPQEN 221

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851836|ref|XP_003701437.1| PREDICTED: uncharacterized protein LOC100878251 [Megachile rotundata]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 49/76 (64%), Positives = 63/76 (82%)

Query: 24  KKLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWD 83
           +++ YETDP +L RRQK+ID+GKNT+GYDRY   V +E RT++HP+TPPK +KYSRR WD
Sbjct: 145 RRVEYETDPKVLARRQKEIDYGKNTIGYDRYIQAVPKEKRTREHPRTPPKYIKYSRRGWD 204

Query: 84  GLIKSWRSRLHFWDPP 99
           G+IK WR +LH WDPP
Sbjct: 205 GMIKLWRKQLHQWDPP 220

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203819|gb|EFN82755.1| Histone RNA hairpin-binding protein [Harpegnathos saltator]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 65/83 (78%)

Query: 24  KKLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWD 83
           K + YE DP +L RRQK+ID+GKNT+GYDRY   V ++ RT++HP+TPPK +KYSRR WD
Sbjct: 176 KHVEYEIDPIVLARRQKEIDYGKNTIGYDRYIQAVPKDKRTREHPRTPPKYIKYSRRGWD 235

Query: 84  GLIKSWRSRLHFWDPPNENGEPN 106
           G+++ WR +LH WDPP E+ + N
Sbjct: 236 GMVRLWRKQLHSWDPPQEDNKTN 258

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193610735|ref|XP_001944356.1| PREDICTED: hypothetical protein LOC100160338 [Acyrthosiphon pisum]

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 77/116 (66%), Gaps = 9/116 (7%)

Query: 25  KLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWDG 84
           KL  ETDP IL RRQKQIDFGKNT+GY +Y   V + +R K HPKTPPK LKY+RRAWDG
Sbjct: 186 KLGRETDPLILSRRQKQIDFGKNTIGYVKYLEQVPKHERKKRHPKTPPKNLKYTRRAWDG 245

Query: 85  LIKSWRSRLHFWDPPNENGEPNSLL-------LDEDDDISSLD--SQSVDSLPCTP 131
           LIK+WR +LH +DP   + + +  L       L     ++SLD  SQ+ DS P TP
Sbjct: 246 LIKNWRVKLHLFDPDRRHDDEDDALTTGSSSNLYSLGSMTSLDSSSQASDSRPSTP 301

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726227|ref|XP_003401462.1| PREDICTED: hypothetical protein LOC100651022 [Bombus terrestris]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 46/76 (60%), Positives = 62/76 (81%)

Query: 24  KKLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWD 83
           +++ YETDP +L RRQK+ID+GKNT+GYDRY   V +E RT++HP+TPPK +KYSRR WD
Sbjct: 143 RRVEYETDPRVLARRQKEIDYGKNTIGYDRYIQAVPKEKRTREHPRTPPKYIKYSRRGWD 202

Query: 84  GLIKSWRSRLHFWDPP 99
            +++ WR +LH WDPP
Sbjct: 203 SMVRLWRKQLHQWDPP 218

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546144|ref|XP_001602614.1| PREDICTED: hypothetical protein LOC100118716 [Nasonia vitripennis]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 61/81 (75%)

Query: 24  KKLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWD 83
           K   YETDP +L RRQK ID+GKNT+GYDRY   V ++ R+KDHP+TPP  LKYSRR WD
Sbjct: 178 KNTEYETDPLVLARRQKDIDYGKNTIGYDRYTQEVPKDKRSKDHPRTPPMYLKYSRRGWD 237

Query: 84  GLIKSWRSRLHFWDPPNENGE 104
           G++K WR +LH WDP N+  E
Sbjct: 238 GMVKLWRKQLHTWDPKNDEEE 258

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405469|ref|XP_003487443.1| PREDICTED: hypothetical protein LOC100745127 [Bombus impatiens]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 46/76 (60%), Positives = 62/76 (81%)

Query: 24  KKLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWD 83
           +++ YETDP +L RRQK+ID+GKNT+GYDRY   V +E RT++HP+TPPK +KYSRR WD
Sbjct: 143 RRVEYETDPKVLARRQKEIDYGKNTIGYDRYIQAVPKEKRTREHPRTPPKYIKYSRRGWD 202

Query: 84  GLIKSWRSRLHFWDPP 99
            +++ WR +LH WDPP
Sbjct: 203 SMVRLWRKQLHQWDPP 218

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110763164|ref|XP_001122465.1| PREDICTED: hypothetical protein LOC726745 [Apis mellifera]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 46/76 (60%), Positives = 62/76 (81%)

Query: 24  KKLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWD 83
           +++ YETDP +L RRQK+ID+GKNT+GYDRY   V +E RT++HP+TPPK +KYSRR WD
Sbjct: 141 RRVEYETDPRVLARRQKEIDYGKNTIGYDRYIQAVPKEKRTREHPRTPPKYIKYSRRGWD 200

Query: 84  GLIKSWRSRLHFWDPP 99
            +++ WR +LH WDPP
Sbjct: 201 SMVRLWRKQLHQWDPP 216

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
FB|FBgn0041186	276	Slbp "Stem-loop binding protei	0.459	0.264	0.643	1.8e-23
UNIPROTKB|E1BZZ0	205	E1BZZ0 "Uncharacterized protei	0.459	0.356	0.567	1.2e-21
UNIPROTKB|C9IY53	250	SLBP "Histone RNA hairpin-bind	0.477	0.304	0.597	2.4e-21
UNIPROTKB|E7EUV9	235	SLBP "Histone RNA hairpin-bind	0.477	0.323	0.597	2.4e-21
UNIPROTKB|F8W8D3	277	SLBP "Histone RNA hairpin-bind	0.477	0.274	0.597	2.4e-21
UNIPROTKB|H0YAE8	225	SLBP "Histone RNA hairpin-bind	0.477	0.337	0.597	2.4e-21
UNIPROTKB|Q14493	270	SLBP "Histone RNA hairpin-bind	0.477	0.281	0.597	2.4e-21
UNIPROTKB|E2RDE5	275	SLBP "Uncharacterized protein"	0.471	0.272	0.605	4.9e-21
UNIPROTKB|F1MQ42	275	LOC100335526 "Uncharacterized	0.471	0.272	0.592	1e-20
MGI|MGI:108402	275	Slbp "stem-loop binding protei	0.471	0.272	0.592	1e-20

FB|FBgn0041186 Slbp "Stem-loop binding protein" [Drosophila melanogaster (taxid:7227)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 47/73 (64%), Positives = 58/73 (79%)

Query:    29 ETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKDHPKTPPKELKYSRRAWDGLIKS 88
             E DPAIL RRQKQID+GKNT  Y+RY  MV +++RT+DHP+TP K  KYSRRA+DGL+K 
Sbjct:   189 EADPAILSRRQKQIDYGKNTAAYERYVEMVPKDERTRDHPRTPNKYGKYSRRAFDGLVKI 248

Query:    89 WRSRLHFWDPPNE 101
             WR  LH +DPP +
Sbjct:   249 WRKSLHIYDPPTQ 261

GO:0008334 "histone mRNA metabolic process" evidence=IMP

GO:0003729 "mRNA binding" evidence=NAS;IMP

GO:0006398 "histone mRNA 3'-end processing" evidence=IDA;IMP;NAS

GO:0007049 "cell cycle" evidence=IMP;NAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0035613 "RNA stem-loop binding" evidence=IDA

UNIPROTKB|E1BZZ0 E1BZZ0 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 226 (84.6 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 42/74 (56%), Positives = 50/74 (67%)

Query:    29 ETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKD-HPKTPPKELKYSRRAWDGLIK 87
             ETD  +L RRQKQI+FGKNT+ YDRY   V +  R    HP+TP K  KYSRR+WD  I+
Sbjct:    23 ETDEVVLRRRQKQINFGKNTLAYDRYIKEVPKNQRIPGVHPRTPNKFKKYSRRSWDQQIR 82

Query:    88 SWRSRLHFWDPPNE 101
              W+  LH WDPP E
Sbjct:    83 LWKIALHAWDPPTE 96

GO:0003729 "mRNA binding" evidence=IEA

UNIPROTKB|C9IY53 SLBP "Histone RNA hairpin-binding protein" [Homo sapiens (taxid:9606)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 46/77 (59%), Positives = 55/77 (71%)

Query:    28 YETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKD-HPKTPPKELKYSRRAWDGLI 86
             +ETD ++L+RRQKQI++GKNT+ YDRY   V R  R    HPKTP K  KYSRR+WD  I
Sbjct:   108 FETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSRRSWDQQI 167

Query:    87 KSWRSRLHFWDPPNENG 103
             K W+  LHFWDPP E G
Sbjct:   168 KLWKVALHFWDPPAEEG 184

GO:0003729 "mRNA binding" evidence=IEA

UNIPROTKB|E7EUV9 SLBP "Histone RNA hairpin-binding protein" [Homo sapiens (taxid:9606)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 46/77 (59%), Positives = 55/77 (71%)

Query:    28 YETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKD-HPKTPPKELKYSRRAWDGLI 86
             +ETD ++L+RRQKQI++GKNT+ YDRY   V R  R    HPKTP K  KYSRR+WD  I
Sbjct:    93 FETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSRRSWDQQI 152

Query:    87 KSWRSRLHFWDPPNENG 103
             K W+  LHFWDPP E G
Sbjct:   153 KLWKVALHFWDPPAEEG 169

GO:0003729 "mRNA binding" evidence=IEA

UNIPROTKB|F8W8D3 SLBP "Histone RNA hairpin-binding protein" [Homo sapiens (taxid:9606)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 46/77 (59%), Positives = 55/77 (71%)

Query:    28 YETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKD-HPKTPPKELKYSRRAWDGLI 86
             +ETD ++L+RRQKQI++GKNT+ YDRY   V R  R    HPKTP K  KYSRR+WD  I
Sbjct:   135 FETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSRRSWDQQI 194

Query:    87 KSWRSRLHFWDPPNENG 103
             K W+  LHFWDPP E G
Sbjct:   195 KLWKVALHFWDPPAEEG 211

GO:0003729 "mRNA binding" evidence=IEA

UNIPROTKB|H0YAE8 SLBP "Histone RNA hairpin-binding protein" [Homo sapiens (taxid:9606)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 46/77 (59%), Positives = 55/77 (71%)

Query:    28 YETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKD-HPKTPPKELKYSRRAWDGLI 86
             +ETD ++L+RRQKQI++GKNT+ YDRY   V R  R    HPKTP K  KYSRR+WD  I
Sbjct:    83 FETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSRRSWDQQI 142

Query:    87 KSWRSRLHFWDPPNENG 103
             K W+  LHFWDPP E G
Sbjct:   143 KLWKVALHFWDPPAEEG 159

GO:0003729 "mRNA binding" evidence=IEA

UNIPROTKB|Q14493 SLBP "Histone RNA hairpin-binding protein" [Homo sapiens (taxid:9606)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 46/77 (59%), Positives = 55/77 (71%)

Query:    28 YETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKD-HPKTPPKELKYSRRAWDGLI 86
             +ETD ++L+RRQKQI++GKNT+ YDRY   V R  R    HPKTP K  KYSRR+WD  I
Sbjct:   128 FETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSRRSWDQQI 187

Query:    87 KSWRSRLHFWDPPNENG 103
             K W+  LHFWDPP E G
Sbjct:   188 KLWKVALHFWDPPAEEG 204

GO:0005515 "protein binding" evidence=IPI

GO:0071208 "histone pre-mRNA DCP binding" evidence=ISS

GO:0003729 "mRNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0033260 "DNA replication involved in S phase" evidence=IMP

GO:0033261 "regulation of S phase" evidence=IMP

GO:0051028 "mRNA transport" evidence=IDA

GO:0071204 "histone pre-mRNA 3'end processing complex" evidence=ISS

GO:0006398 "histone mRNA 3'-end processing" evidence=ISS

GO:0071207 "histone pre-mRNA stem-loop binding" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006369 "termination of RNA polymerase II transcription" evidence=TAS

GO:0006397 "mRNA processing" evidence=TAS

GO:0006406 "mRNA export from nucleus" evidence=TAS

GO:0008334 "histone mRNA metabolic process" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|E2RDE5 SLBP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 46/76 (60%), Positives = 54/76 (71%)

Query:    29 ETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKD-HPKTPPKELKYSRRAWDGLIK 87
             ETD ++L+RRQKQI++GKNT+ YDRY   V R  R    HPKTP K  KYSRR+WD  IK
Sbjct:   129 ETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSRRSWDQQIK 188

Query:    88 SWRSRLHFWDPPNENG 103
              W+  LHFWDPP E G
Sbjct:   189 LWKVALHFWDPPAEEG 204

GO:0071207 "histone pre-mRNA stem-loop binding" evidence=IEA

GO:0071204 "histone pre-mRNA 3'end processing complex" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0033261 "regulation of S phase" evidence=IEA

GO:0033260 "DNA replication involved in S phase" evidence=IEA

GO:0006398 "histone mRNA 3'-end processing" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

UNIPROTKB|F1MQ42 LOC100335526 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 45/76 (59%), Positives = 54/76 (71%)

Query:    29 ETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKD-HPKTPPKELKYSRRAWDGLIK 87
             ETD ++L+RRQKQI++GKNT+ YDRY   V R  R    HPKTP K  KYSRR+WD  I+
Sbjct:   129 ETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGVHPKTPNKFKKYSRRSWDQQIR 188

Query:    88 SWRSRLHFWDPPNENG 103
              W+  LHFWDPP E G
Sbjct:   189 LWKVALHFWDPPAEEG 204

GO:0071207 "histone pre-mRNA stem-loop binding" evidence=IEA

GO:0071204 "histone pre-mRNA 3'end processing complex" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0033261 "regulation of S phase" evidence=IEA

GO:0033260 "DNA replication involved in S phase" evidence=IEA

GO:0006398 "histone mRNA 3'-end processing" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

MGI|MGI:108402 Slbp "stem-loop binding protein" [Mus musculus (taxid:10090)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 45/76 (59%), Positives = 54/76 (71%)

Query:    29 ETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKD-HPKTPPKELKYSRRAWDGLIK 87
             ETD ++L+RRQKQI++GKNT+ YDRY   V R  R    HP+TP K  KYSRR+WD  IK
Sbjct:   129 ETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPRTPNKFKKYSRRSWDQQIK 188

Query:    88 SWRSRLHFWDPPNENG 103
              W+  LHFWDPP E G
Sbjct:   189 LWKVALHFWDPPAEEG 204

GO:0003723 "RNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006398 "histone mRNA 3'-end processing" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0033260 "DNA replication involved in S phase" evidence=ISO

GO:0033261 "regulation of S phase" evidence=ISO

GO:0051028 "mRNA transport" evidence=ISO

GO:0071204 "histone pre-mRNA 3'end processing complex" evidence=IDA

GO:0071207 "histone pre-mRNA stem-loop binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q14493	SLBP_HUMAN	No assigned EC number	0.5974	0.4779	0.2814	yes	N/A
P97440	SLBP_MOUSE	No assigned EC number	0.5921	0.4716	0.2727	yes	N/A
Q9VAN6	SLBP_DROME	No assigned EC number	0.6438	0.4591	0.2644	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
PF15247	73	SLBP_RNA_bind: Histone RNA hairpin-binding protein	100.0
KOG3934|consensus	333		100.0

>PF15247 SLBP_RNA_bind: Histone RNA hairpin-binding protein RNA-binding domain; PDB: 2KJM_A

Probab=100.00  E-value=4.5e-41  Score=240.46  Aligned_cols=72  Identities=57%  Similarity=0.993  Sum_probs=23.0

Q ss_pred             ccCCHHHHHHHhhhHHhhhhhHHHHHHHHhhcCCCCCC-CCCCCCccccCCchhhhhHHHHHHHHhhhccCCC
Q psy676           28 YETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTK-DHPKTPPKELKYSRRAWDGLIKSWRSRLHFWDPP   99 (159)
Q Consensus        28 ~EtD~~rL~qRqKQId~GKnT~gY~~Yi~~VPk~~R~~-~HP~TPnk~~k~SrRsWD~qIk~WRr~LH~wDp~   99 (159)
                      +|+|+++|+||||||+|||||+||+|||++||+++|.+ +||.|||+|++||||+||+|||+||++||+||||
T Consensus         1 ~e~d~~rl~~RqKqI~~GK~T~gY~~Yi~~Vpk~~R~~~~hP~TP~~~~~~SrRswd~qik~WRr~LH~~Dpp   73 (73)
T PF15247_consen    1 METDERRLSQRQKQIDYGKNTIGYQNYIKAVPKHKRQPGIHPRTPNKFQKCSRRSWDGQIKKWRRALHQWDPP   73 (73)
T ss_dssp             ----HHHHHHHHTTT-SS--GGGGHHHHHT-------------------------------------------
T ss_pred             CCcCHHHHHHHHHHHHHhhccHHHHHHHHHcCHHhcCCCCCCCCCCccccCCHHHHHHHHHHHHHHHhccCCC
Confidence            58999999999999999999999999999999999996 9999999999999999999999999999999997

>KOG3934|consensus

Probab=100.00  E-value=9e-38  Score=269.85  Aligned_cols=125  Identities=42%  Similarity=0.674  Sum_probs=105.7

Q ss_pred             CCcccCCHHHHHHHhhhHHhhhhhHHHHHHHHhhcCCCCC-CCCCCCCccccCCchhhhhHHHHHHHHhhhccCCCCCCC
Q psy676           25 KLAYETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRT-KDHPKTPPKELKYSRRAWDGLIKSWRSRLHFWDPPNENG  103 (159)
Q Consensus        25 ~~~~EtD~~rL~qRqKQId~GKnT~gY~~Yi~~VPk~~R~-~~HP~TPnk~~k~SrRsWD~qIk~WRr~LH~wDp~~e~~  103 (159)
                      .+.+|+|+++|++|||||+|||||++|++||..||+++|+ |+||+|||||.|||||+||+|||+|+++||+||||.+++
T Consensus       188 ~~~~etDeaVL~RRqkqIdygKntaaY~RYv~eVP~~~R~~G~HPrTPNK~~kySRRswD~qIK~Wk~sLh~ydpPt~~~  267 (333)
T KOG3934|consen  188 SSYTETDEAVLSRRQKQIDYGKNTAAYERYVEEVPKDERTRGDHPRTPNKYGKYSRRSWDGQIKIWKKSLHIYDPPTQAR  267 (333)
T ss_pred             CcccccCHHHHHHHHHHhccchhhHHHHHHHHhcchhhcccCCCCCCchhhhhcchhhhhhHHHHHHHHhhcccCccccc
Confidence            5688999999999999999999999999999999999999 799999999999999999999999999999999999999


Q ss_pred             CCCCCcccccCC--ccccc----cccc-CCCCCCchHHHHHHHHHHhcC--CCccccccCC
Q psy676          104 EPNSLLLDEDDD--ISSLD----SQSV-DSLPCTPIQEWKRRVRAKRES--LSEDEEEDCK  155 (159)
Q Consensus       104 ~d~~~~~~~~~~--~~~~~----~~~~-~~~p~tp~~~~~~~~~~~~~~--~~~~~~~~~~  155 (159)
                      ++...+-+++.+  -...+    .+++ ..+.+||+.+      .+|+|  +++||++.|-
T Consensus       268 ~t~~~~~dsD~~S~agdndkeienrsvlrdlvipvTmr------pevDSmalgkFDvdsqm  322 (333)
T KOG3934|consen  268 DTAKDSNDSDSDSDAGDNDKEIENRSVLRDLVIPVTMR------PEVDSMALGKFDVDSQM  322 (333)
T ss_pred             cchhccCccccccccccCcccccchhhHhhhccCcccc------cchhhhhccccchhhhc
Confidence            988766643322  11222    2222 2367888887      88888  7789999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
4hxh_C	120	Structure Of Mrna Stem-loop, Human Stem-loop Bindin		7e-21
2kjm_A	30	Solution Structure Of Slbp Rna Binding Domain Fragm		8e-05

>pdb|4HXH|C Chain C, Structure Of Mrna Stem-loop, Human Stem-loop Binding Protein And 3'hexo Ternary Complex Length = 120

Iteration: 1
 Score = 96.3 bits (238), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 28  YETDPAILLRRQKQIDFGKNTVGYDRYCSMVKREDRTKD-HPKTPPKELKYSRRAWDGLI 86
           +ETD ++L+RRQKQI++GKNT+ YDRY   V R  R    HPKTP K  KYSRR+WD  I
Sbjct: 25  FETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSRRSWDQQI 84
Query: 87  KSWRSRLHFWDPPNENG 103
           K W+  LHFWDPP E G
Sbjct: 85  KLWKVALHFWDPPAEEG 101

>pdb|2KJM|A Chain A, Solution Structure Of Slbp Rna Binding Domain Fragment Length = 30

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/30 (63%), Positives = 25/30 (83%)
Query: 29 ETDPAILLRRQKQIDFGKNTVGYDRYCSMV 58
          ETD ++L+RRQKQI++GKNT+ YDRY   V
Sbjct: 1  ETDESVLMRRQKQINYGKNTIAYDRYIKEV 30

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
2kjm_A	30	Histone RNA hairpin-binding protein; RNA binding p	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>2kjm_A Histone RNA hairpin-binding protein; RNA binding protein, SLBP, histone mRNA, stem-loop binding P hairpin binding protein, cytoplasm; NMR {Homo sapiens} Length = 30

 Score = 52.0 bits (124), Expect = 2e-10
 Identities = 19/30 (63%), Positives = 25/30 (83%)

Query: 29 ETDPAILLRRQKQIDFGKNTVGYDRYCSMV 58
          ETD ++L+RRQKQI++GKNT+ YDRY   V
Sbjct: 1  ETDESVLMRRQKQINYGKNTIAYDRYIKEV 30

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 23/164 (14%), Positives = 42/164 (25%), Gaps = 43/164 (26%)

Query: 18  GTPGSGKK-LAYET--DPAILLRRQKQI---DFGKNTVGYDR-------YCSMVKREDRT 64
           G  GSGK  +A +      +  +   +I   +                    +       
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 65  KDHPKTPPKELKYSRRAWDGLIKSWRSRLHFWDPPNENGEPNSLL-LDEDDD-------- 115
            DH       +          I++   RL     P      N LL L    +        
Sbjct: 217 SDHSSNIKLRIH--------SIQAELRRL-LKSKPY----ENCLLVLLNVQNAKAWNAFN 263

Query: 116 ------ISSLDSQSVDSLPCTPIQEWKRRVRAKRESLSEDEEED 153
                 +++   Q  D L  +        +     +L+ DE + 
Sbjct: 264 LSCKILLTTRFKQVTDFL--SAATTTHISLDHHSMTLTPDEVKS 305

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
2kjm_A	30	Histone RNA hairpin-binding protein; RNA binding p	99.43

>2kjm_A Histone RNA hairpin-binding protein; RNA binding protein, SLBP, histone mRNA, stem-loop binding P hairpin binding protein, cytoplasm; NMR {Homo sapiens}

Probab=99.43  E-value=2.7e-14  Score=86.52  Aligned_cols=30  Identities=63%  Similarity=1.062  Sum_probs=28.9

Q ss_pred             cCCHHHHHHHhhhHHhhhhhHHHHHHHHhh
Q psy676           29 ETDPAILLRRQKQIDFGKNTVGYDRYCSMV   58 (159)
Q Consensus        29 EtD~~rL~qRqKQId~GKnT~gY~~Yi~~V   58 (159)
                      |+|+++|.+|||||+|||||+||++|+++|
T Consensus         1 e~d~~~L~~rqkqidygknT~gY~~y~~~v   30 (30)
T 2kjm_A            1 ETDESVLMRRQKQINYGKNTIAYDRYIKEV   30 (30)
T ss_dssp             CCCHHHHHHHHTTTCSSCCGGGGHHHHHTC
T ss_pred             CCcHHHHHHHHHHHHHhhhhHHHHHHHHhC
Confidence            789999999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00