Psyllid ID: psy7646


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
QDYTKFVVGNDDTKQTIAPSAKKLWGVEEGKEDSHKTGGGGILNLNDQMWRDSTWSTSDHGVTQGMAMVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKDNGLEPRMRGLVLNSDGSDVKKEKDKAPASPYDVKKELVDASGAIQTNGMVPVVQNGIDNEDKYKYSSGPGGVVCYSRTPGSRQPSPTDDGSELAAVQAAVHHSHQKPARFSDSSDHGVTQGMAMVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKDNGLEPRMRGLVLE
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccc
ccccEEEEEccccHHHccccHHHHHccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccEEcccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccEEEc
qdytkfvvgnddtkqtiapsakklwgveegkedshktggggilnlndqmwrdstwstsdhgvtqgmamvpsarrpgatfpgtdngagvlsprssdssglgvKMVEYVlgtsptskdngleprmrglvlnsdgsdvkkekdkapaspydvKKELVDAsgaiqtngmvpvvqngidnedkykyssgpggvvcysrtpgsrqpsptddgsELAAVQAAVHhshqkparfsdssdhgvtqgmamvpsarrpgatfpgtdngagvlsprssdssglgvKMVEYVlgtsptskdngleprmrglvle
qdytkfvvgnddtkqtiapsakklwgveegkedshktggggilnlndQMWRDSTWSTSDHGVTQGMAMVPSARRPGATFpgtdngagvlsprssdssglGVKMVEYVLGtsptskdngleprmrglvlnsdgsdvkkekdkapaspydvKKELVDAsgaiqtngmvpvvQNGIDNEDKYKYSSGPGGVVCYSRTPGSRQPSPTDDGSELAAVQAAVHHSHQKPARFSDSSDHGVTQGMAMVPSARRPGATFpgtdngagvlsprssdssglGVKMVEYVlgtsptskdngleprmrglvle
QDYTKFVVGNDDTKQTIAPSAKKLWGVEEGKEDSHKTGGGGILNLNDQMWRDSTWSTSDHGVTQGMAMVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKDNGLEPRMRGLVLNSDGSDVKKEKDKAPASPYDVKKELVDASGAIQTNGMVPVVQNGIDNEDKYKYSSGPGGVVCYSRTPGSRQPSPTDDGSELaavqaavhhshqKPARFSDSSDHGVTQGMAMVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKDNGLEPRMRGLVLE
*****************************************ILNLNDQMWR****************************************************VEYV****************************************************IQTNGMVPVVQNGID****YKY****GGVVCY************************************************************************************VEYV**********************
***TK*************PS***********************NLNDQMWRDSTWS***************************************SSGLGVKMVEYVLGTSP************************************************************IDNEDKYKYS**************************************************************************************SGLGVKMVEYVL**************MRGL***
QDYTKFVVGNDDTKQTIAPSAKKLWG***********GGGGILNLNDQMWRDSTWSTSDHGVTQGMAMVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKDNGLEPRMRGLVLNSD***************YDVKKELVDASGAIQTNGMVPVVQNGIDNEDKYKYSSGPGGVVCYSR****************************************VTQGMAMVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKDNGLEPRMRGLVLE
QDYTKFVVGNDDTKQTIAPSAKKLWGV******************NDQMWRDSTWSTSDHGVTQGMAMVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTS****************************************************GMVPV*QNGIDNEDKYKY**GPGGVVCYSRTP**************************************VTQGMAMVPSARRPGAT*********VLSPRSSDSSGLGVKMVEYVLGTS******GLEPRMRGLVL*
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QDYTKFVVGNDDTKQTIAPSAKKLWGVEEGKEDSHKTGGGGILNLNDQMWRDSTWSTSDHGVTQGMAMVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKDNGLEPRMRGLVLNSDGSDVKKEKDKAPASPYDVKKELVDASGAIQTNGMVPVVQNGIDNEDKYKYSSGPGGVVCYSRTPGSRQPSPTDDGSELAAVQAAVHHSHQKPARFSDSSDHGVTQGMAMVPSARRPGATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKDNGLEPRMRGLVLE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query301 2.2.26 [Sep-21-2011]
P25822 1533 Maternal protein pumilio no N/A 0.524 0.103 0.355 2e-15
Q80U58 1066 Pumilio homolog 2 OS=Mus yes N/A 0.511 0.144 0.359 3e-15
Q80U78 1189 Pumilio homolog 1 OS=Mus no N/A 0.514 0.130 0.389 6e-15
Q14671 1186 Pumilio homolog 1 OS=Homo yes N/A 0.514 0.130 0.389 6e-15
Q5R5X3 1186 Pumilio homolog 1 OS=Pong yes N/A 0.514 0.130 0.389 6e-15
Q2VB19 1189 Pumilio homolog 1 OS=Gall yes N/A 0.518 0.131 0.386 4e-14
Q8TB72 1066 Pumilio homolog 2 OS=Homo no N/A 0.518 0.146 0.356 2e-13
>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2 Back     alignment and function desciption
 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 98/200 (49%), Gaps = 42/200 (21%)

Query: 20  SAKKLWGVEEGKEDSHKTGGGGILNLN-------DQMWRDSTWSTSDHGVTQGMAMVPSA 72
           +AKKLW   +GK  S  T GG +  L          +W+D TWST    +     +VP  
Sbjct: 377 TAKKLWEKSDGKGVSSSTPGGPLHPLQIPGIGDPSSVWKDHTWSTQGENI-----LVPPP 431

Query: 73  RRP----GATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKDN---GLEPRMRG 125
            R     GA+       AG+LSPR S  +    K+VEYV   SPT+KD+   GLEP +R 
Sbjct: 432 SRAYAHGGASDTSNSGNAGILSPRDSTCA----KVVEYVFSGSPTNKDSSLSGLEPHLRN 487

Query: 126 LVLNSDGSDVKKEKDKAPASPYDVKKELVDASGAIQTNGMVPVVQNGIDNEDKYKYSSGP 185
           L  + D    + +K+KA  SP+D    L        +NG+V    NGID++  +      
Sbjct: 488 LKFD-DNDKSRDDKEKA-NSPFDTNG-LKKDDQVTNSNGVV----NGIDDDKGF------ 534

Query: 186 GGVVCYSRTPGSRQPSPTDD 205
                 +RTPGSRQPSP ++
Sbjct: 535 ------NRTPGSRQPSPAEE 548




Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding to the Nanos Response Element (NRE), a 16 bp sequence in the hb mRNA 3'-UTR and prevents its translation. Required for abdominal development and to support proliferation and self-renewal of germ cells. Pum is the only gene required for nos activity that is not also required for posterior localization of germline determinants. Pum is required during embryogenesis when nos activity apparently moves anteriorly from the posterior pole.
Drosophila melanogaster (taxid: 7227)
>sp|Q80U58|PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2 Back     alignment and function description
>sp|Q80U78|PUM1_MOUSE Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=2 Back     alignment and function description
>sp|Q14671|PUM1_HUMAN Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3 Back     alignment and function description
>sp|Q5R5X3|PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1 Back     alignment and function description
>sp|Q2VB19|PUM1_CHICK Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1 Back     alignment and function description
>sp|Q8TB72|PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query301
242020207 443 conserved hypothetical protein [Pediculu 0.544 0.370 0.523 1e-38
340719709 1239 PREDICTED: pumilio homolog 1-like [Bombu 0.554 0.134 0.520 1e-34
380029756 1240 PREDICTED: LOW QUALITY PROTEIN: pumilio 0.554 0.134 0.520 1e-34
328786740 1240 PREDICTED: pumilio homolog 2 [Apis melli 0.554 0.134 0.520 1e-34
350400877 1240 PREDICTED: pumilio homolog 1-like [Bombu 0.554 0.134 0.515 5e-34
328698836 983 PREDICTED: pumilio homolog 2-like isofor 0.475 0.145 0.542 2e-33
328698838 1151 PREDICTED: pumilio homolog 2-like isofor 0.468 0.122 0.549 3e-33
328698840 1116 PREDICTED: pumilio homolog 2-like isofor 0.468 0.126 0.549 3e-33
383848137 1241 PREDICTED: pumilio homolog 2-like [Megac 0.554 0.134 0.510 3e-33
332017053330 Pumilio-like protein 2 [Acromyrmex echin 0.551 0.503 0.497 3e-30
>gi|242020207|ref|XP_002430547.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212515711|gb|EEB17809.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/191 (52%), Positives = 132/191 (69%), Gaps = 27/191 (14%)

Query: 17  IAPSAKKLWGVEEGKEDSHKTGGGGILNLND-QMWRDSTWSTSDHGVTQGMAMVPSARRP 75
           IAPSAKKLWGVEE ++D       G+L+L+D QMWRDSTWS +DH V+Q ++MVP  RR 
Sbjct: 145 IAPSAKKLWGVEEQRDDK------GLLHLSDHQMWRDSTWSIADHAVSQPISMVP--RRS 196

Query: 76  GATFPGTDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTSKDNGLEPRMRGLVLNS-DGSD 134
           G +FPG+D  A +LSPRSSD+ GLGVKMVEYVL TSPT+KD+ LE RMR LVLNS DG  
Sbjct: 197 G-SFPGSDT-ANMLSPRSSDTGGLGVKMVEYVLATSPTNKDH-LESRMRNLVLNSTDGDK 253

Query: 135 VKKEKDKAPASPYDVKKELVDASGAIQTNGMVPVVQNGIDNEDKYKYSSGPGGVVCYSRT 194
            +KE ++   + Y+ KK+ V+ + + Q NG      NG+ +++K            ++RT
Sbjct: 254 KEKELNENSTNSYETKKDDVNGNNSGQANGH---ASNGLPDDEK-----------TFNRT 299

Query: 195 PGSRQPSPTDD 205
           PGSRQPSP ++
Sbjct: 300 PGSRQPSPAEE 310




Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719709|ref|XP_003398290.1| PREDICTED: pumilio homolog 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380029756|ref|XP_003698531.1| PREDICTED: LOW QUALITY PROTEIN: pumilio homolog 2-like [Apis florea] Back     alignment and taxonomy information
>gi|328786740|ref|XP_391849.4| PREDICTED: pumilio homolog 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|350400877|ref|XP_003485990.1| PREDICTED: pumilio homolog 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328698836|ref|XP_001950648.2| PREDICTED: pumilio homolog 2-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328698838|ref|XP_003240745.1| PREDICTED: pumilio homolog 2-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328698840|ref|XP_003240746.1| PREDICTED: pumilio homolog 2-like isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|383848137|ref|XP_003699708.1| PREDICTED: pumilio homolog 2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|332017053|gb|EGI57852.1| Pumilio-like protein 2 [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query301
UNIPROTKB|F6XHY4 1162 PUM1 "Uncharacterized protein" 0.554 0.143 0.408 1.4e-18
UNIPROTKB|E2QVA9 1224 PUM1 "Uncharacterized protein" 0.554 0.136 0.408 1.5e-18
UNIPROTKB|H0YEH2 1125 PUM1 "Pumilio homolog 1" [Homo 0.554 0.148 0.403 1.7e-18
UNIPROTKB|E1BE82 1186 PUM1 "Uncharacterized protein" 0.554 0.140 0.403 1.9e-18
UNIPROTKB|Q14671 1186 PUM1 "Pumilio homolog 1" [Homo 0.554 0.140 0.403 1.9e-18
UNIPROTKB|E9PCJ0 1188 PUM1 "Pumilio homolog 1" [Homo 0.554 0.140 0.403 1.9e-18
UNIPROTKB|Q5T1Z4 1189 PUM1 "Pumilio homolog 1" [Homo 0.554 0.140 0.403 1.9e-18
MGI|MGI:1931749 1189 Pum1 "pumilio 1 (Drosophila)" 0.554 0.140 0.403 1.9e-18
UNIPROTKB|Q5T1Z8 1224 PUM1 "Pumilio homolog 1 (Droso 0.554 0.136 0.403 2e-18
ZFIN|ZDB-GENE-030131-2074 1154 pum1 "pumilio homolog 1 (Droso 0.511 0.133 0.408 3e-18
UNIPROTKB|F6XHY4 PUM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 237 (88.5 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 78/191 (40%), Positives = 99/191 (51%)

Query:    22 KKLWGVEEGKEDSHKTGGGGILNLNDQMWRDSTWSTSDHGVTQGMAMVPSARRPGATFPG 81
             KK W  +E  +D  K    GI  L DQ WRDS W TSDH V+Q + MV   RRPG +F  
Sbjct:   150 KKFWETDESSKDGPK----GIF-LGDQ-WRDSAWGTSDHSVSQPI-MVQ--RRPGQSFHV 200

Query:    82 TDNGAGVLSPRSSDSSGLGVKMVEYVLGTSPTS---KDNGLEPRMRGLVLNSDGSDVKKE 138
                   VLSPRS +S GLGV MVEYVL +SP     +  G  PR      +SD +D   +
Sbjct:   201 NSEVNSVLSPRS-ESGGLGVSMVEYVLSSSPGDSCLRKGGFGPRDA----DSDENDKGDK 255

Query:   139 KDKAPASPYDVKKELVDASGAI-QTNGMVPVVQNGIDNEDKYKYSSGPGGVVCYSRTPGS 197
             K+K  A   D   +L +    + +TNG+ PV QNGID + K  +S  PG   C +     
Sbjct:   256 KNKG-AFDGDKLGDLKEEGDVMDKTNGL-PV-QNGIDADVK-DFSRTPGN--CQNSANEV 309

Query:   198 RQPSPTDDGSE 208
                 P  +GSE
Sbjct:   310 DLLGPNQNGSE 320


GO:0003723 "RNA binding" evidence=IEA
UNIPROTKB|E2QVA9 PUM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|H0YEH2 PUM1 "Pumilio homolog 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BE82 PUM1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q14671 PUM1 "Pumilio homolog 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PCJ0 PUM1 "Pumilio homolog 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T1Z4 PUM1 "Pumilio homolog 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1931749 Pum1 "pumilio 1 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T1Z8 PUM1 "Pumilio homolog 1 (Drosophila), isoform CRA_c" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2074 pum1 "pumilio homolog 1 (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00