Psyllid ID: psy8839

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MKERSSREEYTFFTVYLLGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRETSVS
Secondary Structure (PSIPRED)
ccccccccEEEEccccEEEEEEEEccEEEEcccccccccccccccccEEEEcccccccccccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEHHEEEEEEHccHHHHcHHHHHcHHHHccccccEEEEEccccccccccccHHHHHHcccc
Coil and Loop (DISEMBL)
mkerssreeyTFFTVYLLGFDILVAdecliaplgifhpellgltgtkivvtqsravsdpedphdgdylretsvs
Flexible Loop (DISEMBL)
mkerssreeYTFFTVYLLGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQsravsdpedphdgdylretsvs
Low Complexity Region (SEG)
MKERSSREEYTFFTVYLLGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRETSVS
Disordered region (IsUnstruct)
*********YTFFTVYLLGFDILVADECLIAPLGIFHPELLGLTGTKIVVT***********************
Disordered Region (DISOPRED)
************FTVYLLGFDILVADECLIAPLGIFHPELLGLTGTKI*************PHDGDYLRET***
Disordered Region (DISEMBL)
********EYTFFTVYLLGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRETSVS
Disordered Region (DISPRO)
******REEYTFFTVYLLGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKERSSREEYTFFTVYLLGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRETSVS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	74	2.2.26 [Sep-21-2011]
Q0IEG8	562	Actin-related protein 8 O	N/A	N/A	0.702	0.092	0.482	7e-08
Q1LZF2	624	Actin-related protein 8 O	yes	N/A	0.729	0.086	0.425	3e-07
D2I1E3	624	Actin-related protein 8 O	yes	N/A	0.729	0.086	0.425	4e-07
Q5RDA1	624	Actin-related protein 8 O	yes	N/A	0.729	0.086	0.425	4e-07
Q8R2S9	624	Actin-related protein 8 O	yes	N/A	0.729	0.086	0.425	4e-07
Q9H981	624	Actin-related protein 8 O	yes	N/A	0.729	0.086	0.425	4e-07
B5X2S3	632	Actin-related protein 8 O	N/A	N/A	0.729	0.085	0.425	4e-07
Q9VX09	607	Actin-related protein 8 O	yes	N/A	0.716	0.087	0.534	1e-06
Q29G73	608	Actin-related protein 8 O	yes	N/A	0.729	0.088	0.438	0.0002
P59679	623	Actin-related protein 8 O	yes	N/A	0.743	0.088	0.345	0.0004

>sp|Q0IEG8|ARP8_AEDAE Actin-related protein 8 OS=Aedes aegypti GN=Arp8 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 20  FDILVADECLIAPLGIFHPELLGLTG----TKIVVTQSRAVSDPEDPHDGDYLRET 71
           F + + DE ++APLG+FH ELL +TG    T +    SRA   PED  D +YLRET
Sbjct: 342 FTLQIGDEAIVAPLGLFHTELLSVTGVNKSTPMTQKPSRAQPHPEDCFDAEYLRET 397

Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.
Aedes aegypti (taxid: 7159)

>sp|Q1LZF2|ARP8_BOVIN Actin-related protein 8 OS=Bos taurus GN=ACTR8 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 18  LGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
           L +   + DE L AP+ +F+P   G+ G K+   Q R+  DPEDPHD  YL  T
Sbjct: 375 LLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEQYLLAT 428

Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Required for the recruitment of INO80 (and probably the INO80 complex) to sites of DNA damage.

Bos taurus (taxid: 9913)

>sp|D2I1E3|ARP8_AILME Actin-related protein 8 OS=Ailuropoda melanoleuca GN=ACTR8 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 18  LGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
           L +   + DE L AP+ +F+P   G+ G K+   Q R+  DPEDPHD  YL  T
Sbjct: 375 LLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLAT 428

Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Required for the recruitment of INO80 (and probably the INO80 complex) to sites of DNA damage.

Ailuropoda melanoleuca (taxid: 9646)

>sp|Q5RDA1|ARP8_PONAB Actin-related protein 8 OS=Pongo abelii GN=ACTR8 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 18  LGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
           L +   + DE L AP+ +F+P   G+ G K+   Q R+  DPEDPHD  YL  T
Sbjct: 375 LLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLAT 428

Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Required for the recruitment of INO80 (and probably the INO80 complex) to sites of DNA damage.

Pongo abelii (taxid: 9601)

>sp|Q8R2S9|ARP8_MOUSE Actin-related protein 8 OS=Mus musculus GN=Actr8 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 18  LGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
           L +   + DE L AP+ +F+P   G+ G K+   Q R+  DPEDPHD  YL  T
Sbjct: 375 LLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLAT 428

Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Required for the recruitment of INO80 (and probably the INO80 complex) to sites of DNA damage.

Mus musculus (taxid: 10090)

>sp|Q9H981|ARP8_HUMAN Actin-related protein 8 OS=Homo sapiens GN=ACTR8 PE=1 SV=2

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 18  LGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
           L +   + DE L AP+ +F+P   G+ G K+   Q R+  DPEDPHD  YL  T
Sbjct: 375 LLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLAT 428

Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA reoplication and probably DNA repair. Required for the recruitment of INO80 (and probably the INO80 complex) to sites of DNA damage.

Homo sapiens (taxid: 9606)

>sp|B5X2S3|ARP8_SALSA Actin-related protein 8 OS=Salmo salar GN=actr8 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%)

Query: 18  LGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
           L + + + DE L AP+ +F+P   G+ G K+   Q R+  DPEDPHD  YL  T
Sbjct: 380 LLYQVRLGDEKLQAPMALFYPTTFGIVGQKMTSLQHRSQGDPEDPHDEHYLLGT 433

Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Required for the recruitment of INO80 (and probably the INO80 complex) to sites of DNA damage.

Salmo salar (taxid: 8030)

>sp|Q9VX09|ARP8_DROME Actin-related protein 8 OS=Drosophila melanogaster GN=Arp8 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 38/58 (65%), Gaps = 5/58 (8%)

Query: 18  LGFDILVADECLIAPLGIFHPELLGLTG-TKIVVTQSRAVSDP---EDPHDGDYLRET 71
           L + I V DE L+APL +FH ELL +TG TK V TQ +AV D    ED  D +YL+ET
Sbjct: 371 LRYTIQVGDEALMAPLALFHTELLNITGRTKAVFTQ-QAVQDQYDCEDCFDAEYLKET 427

Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Drosophila melanogaster (taxid: 7227)

>sp|Q29G73|ARP8_DROPS Actin-related protein 8 OS=Drosophila pseudoobscura pseudoobscura GN=Arp8 PE=3 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 18  LGFDILVADECLIAPLGIFHPELLGLTG-TKIVVTQS--RAVSDPEDPHDGDYLRET 71
           L + + V DE ++APL  FH ELL +TG  +   TQ   +   D ED  D +YLRET
Sbjct: 365 LRYTLQVGDEAIMAPLAFFHTELLNITGKARKAFTQQPPQEQYDCEDCFDAEYLRET 421

Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|P59679|ARP8_DANRE Actin-related protein 8 OS=Danio rerio GN=actr8 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 17  LLGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
           +L + + + DE L AP+ +F+P   G+ G ++     R+  D EDPHD  +L  T
Sbjct: 374 VLLYQLRLGDEKLQAPMTLFYPAAFGIVGQRMTSLLHRSQGDAEDPHDEHFLLTT 428

Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Required for the recruitment of INO80 (and probably the INO80 complex) to sites of DNA damage.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
189241972	568	PREDICTED: similar to AGAP010671-PA [Tri	0.783	0.102	0.534	1e-11
66514488	567	PREDICTED: actin-related protein 8 isofo	0.716	0.093	0.584	2e-11
380020415	567	PREDICTED: actin-related protein 8-like	0.716	0.093	0.584	2e-11
350403435	566	PREDICTED: actin-related protein 8-like	0.716	0.093	0.584	2e-11
383851240	567	PREDICTED: actin-related protein 8-like	0.716	0.093	0.584	4e-11
340727032	566	PREDICTED: actin-related protein 8-like	0.716	0.093	0.584	6e-11
380020417	547	PREDICTED: actin-related protein 8-like	0.716	0.096	0.584	6e-11
270015587	562	hypothetical protein TcasGA2_TC001452 [T	0.729	0.096	0.537	7e-11
241741179	525	conserved hypothetical protein [Ixodes s	0.783	0.110	0.534	1e-10
332018420	590	Actin-related protein 8 [Acromyrmex echi	0.716	0.089	0.584	1e-10

>gi|189241972|ref|XP_967032.2| PREDICTED: similar to AGAP010671-PA [Tribolium castaneum]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 41/58 (70%)

Query: 17  LLGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRETSVS 74
           +L + I V DEC++APL +F PEL G+TG K + TQ  +  DPEDPHD +YLR+  VS
Sbjct: 339 ILKYTIQVGDECIVAPLSMFSPELFGITGVKTIRTQKASSGDPEDPHDENYLRDIRVS 396

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66514488|ref|XP_394752.2| PREDICTED: actin-related protein 8 isoform 1 [Apis mellifera]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 20  FDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRETS 72
           + + V DECL+APL +F PEL  +TGT  V  Q R++ DPEDPHD +YLRETS
Sbjct: 342 YTLQVGDECLVAPLSLFQPELFKVTGTHSVHIQKRSMGDPEDPHDENYLRETS 394

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020415|ref|XP_003694081.1| PREDICTED: actin-related protein 8-like isoform 1 [Apis florea]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 20  FDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRETS 72
           + + V DECL+APL +F PEL  +TGT  V  Q R++ DPEDPHD +YLRETS
Sbjct: 342 YTLQVGDECLVAPLSLFQPELFKVTGTHSVHIQKRSMGDPEDPHDENYLRETS 394

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403435|ref|XP_003486802.1| PREDICTED: actin-related protein 8-like [Bombus impatiens]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 20  FDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRETS 72
           + + V DECL+APL +F PEL  +TGT  V  Q R++ DPEDPHD +YLRETS
Sbjct: 342 YTLQVGDECLVAPLSLFQPELFKVTGTHSVHIQKRSMGDPEDPHDENYLRETS 394

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851240|ref|XP_003701142.1| PREDICTED: actin-related protein 8-like [Megachile rotundata]

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 38/53 (71%)

Query: 20  FDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRETS 72
           + + V DECL+APL +F PEL  +TGT  V  Q R+  DPEDPHD +YLRETS
Sbjct: 342 YTLQVGDECLVAPLSLFQPELFKVTGTHNVHIQKRSTGDPEDPHDENYLRETS 394

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727032|ref|XP_003401855.1| PREDICTED: actin-related protein 8-like [Bombus terrestris]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 20  FDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRETS 72
           + + V DECL+APL +F PEL  +TGT  V  Q R++ DPEDPHD +YLRETS
Sbjct: 342 YTLQVGDECLVAPLSLFQPELFKVTGTHSVHIQKRSMGDPEDPHDENYLRETS 394

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020417|ref|XP_003694082.1| PREDICTED: actin-related protein 8-like isoform 2 [Apis florea]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 20  FDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRETS 72
           + + V DECL+APL +F PEL  +TGT  V  Q R++ DPEDPHD +YLRETS
Sbjct: 342 YTLQVGDECLVAPLSLFQPELFKVTGTHSVHIQKRSMGDPEDPHDENYLRETS 394

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270015587|gb|EFA12035.1| hypothetical protein TcasGA2_TC001452 [Tribolium castaneum]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 39/54 (72%)

Query: 17  LLGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRE 70
           +L + I V DEC++APL +F PEL G+TG K + TQ  +  DPEDPHD +YLR+
Sbjct: 337 ILKYTIQVGDECIVAPLSMFSPELFGITGVKTIRTQKASSGDPEDPHDENYLRD 390

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241741179|ref|XP_002412372.1| conserved hypothetical protein [Ixodes scapularis] gi|215505693|gb|EEC15187.1| conserved hypothetical protein [Ixodes scapularis]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 39/58 (67%)

Query: 17  LLGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRETSVS 74
           L  + I V DECL+APL +F PE+LG+TG K    QSR   DP+DPHD +YL +T  S
Sbjct: 281 LFEYRIKVGDECLVAPLALFRPEMLGVTGPKQARVQSRNPGDPQDPHDDNYLIQTQAS 338

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018420|gb|EGI59014.1| Actin-related protein 8 [Acromyrmex echinatior]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 20  FDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRETS 72
           + + V DECLIAPL +F PEL  +TGT  V  Q R++ DPEDP+D +YLRETS
Sbjct: 366 YTMQVGDECLIAPLSLFQPELFRITGTHNVHVQKRSLGDPEDPYDENYLRETS 418

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
UNIPROTKB|Q0IEG8	562	Arp8 "Actin-related protein 8"	0.702	0.092	0.5	2.3e-07
FB|FBgn0030877	607	Arp8 "Actin-related protein 8"	0.716	0.087	0.534	5.5e-07
UNIPROTKB|Q1LZF2	624	ACTR8 "Actin-related protein 8	0.702	0.083	0.423	1.5e-06
UNIPROTKB|F1NXV7	621	ACTR8 "Uncharacterized protein	0.702	0.083	0.423	1.9e-06
UNIPROTKB|Q9H981	624	ACTR8 "Actin-related protein 8	0.702	0.083	0.423	2e-06
UNIPROTKB|F1SH80	624	ACTR8 "Uncharacterized protein	0.702	0.083	0.423	2e-06
MGI|MGI:1860775	624	Actr8 "ARP8 actin-related prot	0.702	0.083	0.423	2e-06
UNIPROTKB|Q29G73	608	Arp8 "Actin-related protein 8"	0.729	0.088	0.438	9.9e-05
ZFIN|ZDB-GENE-030131-5065	623	actr8 "ARP8 actin-related prot	0.743	0.088	0.345	0.00057

UNIPROTKB|Q0IEG8 Arp8 "Actin-related protein 8" [Aedes aegypti (taxid:7159)]

 Score = 128 (50.1 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 28/56 (50%), Positives = 36/56 (64%)

Query:    20 FDILVADECLIAPLGIFHPELLGLTGTK--IVVTQ--SRAVSDPEDPHDGDYLRET 71
             F + + DE ++APLG+FH ELL +TG      +TQ  SRA   PED  D +YLRET
Sbjct:   342 FTLQIGDEAIVAPLGLFHTELLSVTGVNKSTPMTQKPSRAQPHPEDCFDAEYLRET 397

GO:0006338 "chromatin remodeling" evidence=ISS

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

FB|FBgn0030877 Arp8 "Actin-related protein 8" [Drosophila melanogaster (taxid:7227)]

 Score = 125 (49.1 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 31/58 (53%), Positives = 38/58 (65%)

Query:    18 LGFDILVADECLIAPLGIFHPELLGLTG-TKIVVTQSRAVSDP---EDPHDGDYLRET 71
             L + I V DE L+APL +FH ELL +TG TK V TQ +AV D    ED  D +YL+ET
Sbjct:   371 LRYTIQVGDEALMAPLALFHTELLNITGRTKAVFTQ-QAVQDQYDCEDCFDAEYLKET 427

GO:0031011 "Ino80 complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=ISS

GO:0043140 "ATP-dependent 3'-5' DNA helicase activity" evidence=ISS

UNIPROTKB|Q1LZF2 ACTR8 "Actin-related protein 8" [Bos taurus (taxid:9913)]

 Score = 121 (47.7 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query:    20 FDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
             +   + DE L AP+ +F+P   G+ G K+   Q R+  DPEDPHD  YL  T
Sbjct:   377 YQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEQYLLAT 428

GO:0031011 "Ino80 complex" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1NXV7 ACTR8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query:    20 FDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
             +   + DE L AP+ +F+P   G+ G K+   Q R+  DPEDPHD  YL  T
Sbjct:   374 YQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLAT 425

GO:0031011 "Ino80 complex" evidence=IEA

UNIPROTKB|Q9H981 ACTR8 "Actin-related protein 8" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query:    20 FDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
             +   + DE L AP+ +F+P   G+ G K+   Q R+  DPEDPHD  YL  T
Sbjct:   377 YQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLAT 428

GO:0005524 "ATP binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1SH80 ACTR8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query:    20 FDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
             +   + DE L AP+ +F+P   G+ G K+   Q R+  DPEDPHD  YL  T
Sbjct:   377 YQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLAT 428

GO:0031011 "Ino80 complex" evidence=IEA

MGI|MGI:1860775 Actr8 "ARP8 actin-related protein 8" [Mus musculus (taxid:10090)]

 Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query:    20 FDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
             +   + DE L AP+ +F+P   G+ G K+   Q R+  DPEDPHD  YL  T
Sbjct:   377 YQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLAT 428

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005694 "chromosome" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0031011 "Ino80 complex" evidence=ISO

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|Q29G73 Arp8 "Actin-related protein 8" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 104 (41.7 bits), Expect = 9.9e-05, P = 9.9e-05
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query:    18 LGFDILVADECLIAPLGIFHPELLGLTG-TKIVVTQS--RAVSDPEDPHDGDYLRET 71
             L + + V DE ++APL  FH ELL +TG  +   TQ   +   D ED  D +YLRET
Sbjct:   365 LRYTLQVGDEAIMAPLAFFHTELLNITGKARKAFTQQPPQEQYDCEDCFDAEYLRET 421

GO:0006338 "chromatin remodeling" evidence=ISS

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

ZFIN|ZDB-GENE-030131-5065 actr8 "ARP8 actin-related protein 8 homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 97 (39.2 bits), Expect = 0.00057, P = 0.00057
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query:    17 LLGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
             +L + + + DE L AP+ +F+P   G+ G ++     R+  D EDPHD  +L  T
Sbjct:   374 VLLYQLRLGDEKLQAPMTLFYPAAFGIVGQRMTSLLHRSQGDAEDPHDEHFLLTT 428


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.139   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       74        74   0.00091  102 3  11 22  0.37    29
                                                     29  0.46    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  464 (49 KB)
  Total size of DFA:  86 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.16u 0.10s 7.26t   Elapsed:  00:00:00
  Total cpu time:  7.16u 0.10s 7.26t   Elapsed:  00:00:00
  Start:  Thu Aug 15 17:07:09 2013   End:  Thu Aug 15 17:07:09 2013

GO:0051301 "cell division" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VX09	ARP8_DROME	No assigned EC number	0.5344	0.7162	0.0873	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
KOG0797|consensus	618		99.8

>KOG0797|consensus

Probab=99.80  E-value=1.3e-20  Score=155.04  Aligned_cols=61  Identities=34%  Similarity=0.455  Sum_probs=58.5

Q ss_pred             ccceeeeeEEEccchhhcccccccccccccccCCceeeeccCCCCCCCCCCChhhhhhccC
Q psy8839          13 FTVYLLGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRETSV   73 (74)
Q Consensus        13 f~~~~~kY~~kVgDE~m~APL~LFyP~lf~I~~~~~~~~q~r~~~DpED~~D~~YL~eT~~   73 (74)
                      =+.+++||+||+|||+|+||||||||++|+|++.+++..|++.|+|||||||.+||++|+.
T Consensus       368 pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~~~~~~~  428 (618)
T KOG0797|consen  368 PNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEYLLEDTW  428 (618)
T ss_pred             CCCcceeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccccchhhhhhhcc
Confidence            3789999999999999999999999999999999999999999999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	74
4fo0_A	593	Human Actin-Related Protein Arp8 In Its Atp-Bound S		3e-08

>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 18  LGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET 71
           L +   + DE L AP+ +F+P   G+ G K+   Q R+  DPEDPHD  YL  T
Sbjct: 344 LLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLAT 397

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
4am6_A	655	Actin-like protein ARP8; nuclear protein, chromati	99.06
4fo0_A	593	Actin-related protein 8; chromatin remodeling, nuc	98.86
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	96.88

>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*

Probab=99.06  E-value=3.3e-11  Score=98.75  Aligned_cols=60  Identities=20%  Similarity=0.391  Sum_probs=47.8

Q ss_pred             chheec----cceeeeeEEEccchhhcccccccccccccccCCceeee--ccCCCCCCCCCCChhh
Q psy8839           8 EEYTFF----TVYLLGFDILVADECLIAPLGIFHPELLGLTGTKIVVT--QSRAVSDPEDPHDGDY   67 (74)
Q Consensus         8 ~~~~~f----~~~~~kY~~kVgDE~m~APL~LFyP~lf~I~~~~~~~~--q~r~~~DpED~~D~~Y   67 (74)
                      .+|+++    ++.+.+|+|+||||+++|||+||+|++|++++....+-  -.+..++++|+||+.|
T Consensus       354 q~~~f~~r~P~~~~~ky~i~vgdErflaPe~lF~Pei~~~~~~~~~~~~~~~~~~~~s~d~y~~~~  419 (655)
T 4am6_A          354 QLYNFMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRDLFTNEL  419 (655)
T ss_dssp             EEEEEEECCSSSCEEEEEEEESSHHHHHHHGGGSTHHHHHTSCCCCCCHHHHTTSCCCBCTTTCCB
T ss_pred             hhhcceeccCCCCCcceEEEECCeehhCchhcCChhhcccccccccccchhhhhcCccccccCCCC
Confidence            455554    46788999999999999999999999999999875210  0245899999999766

>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}

Probab=98.86  E-value=9.8e-10  Score=82.82  Aligned_cols=62  Identities=37%  Similarity=0.600  Sum_probs=40.3

Q ss_pred             heeccceeeeeEEEccchhhcccccccccccccccCCceeeeccCCCCCCCCCCChhhhhhc
Q psy8839          10 YTFFTVYLLGFDILVADECLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET   71 (74)
Q Consensus        10 ~~~f~~~~~kY~~kVgDE~m~APL~LFyP~lf~I~~~~~~~~q~r~~~DpED~~D~~YL~eT   71 (74)
                      +..-+.++.+|++++|||+++||+++|+|+++++.+......+.+...+|+||+++.+|.++
T Consensus       336 ~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (593)
T 4fo0_A          336 IRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLAT  397 (593)
T ss_dssp             ECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGCCCSSCCEEECC------------------
T ss_pred             cccCCCCceeeEEeccchhhcCchhhcChhhhcccccccchhhhhcccCcccchhhhhhhhc
Confidence            33446788999999999999999999999999999999999999999999999999998654

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}

Probab=96.88  E-value=0.00033  Score=54.86  Aligned_cols=47  Identities=13%  Similarity=0.073  Sum_probs=38.5

Q ss_pred             eEEEccch-hhcccccccccccccccCCceeeeccCCCCCCCCCCChhhhhhc
Q psy8839          20 FDILVADE-CLIAPLGIFHPELLGLTGTKIVVTQSRAVSDPEDPHDGDYLRET   71 (74)
Q Consensus        20 Y~~kVgDE-~m~APL~LFyP~lf~I~~~~~~~~q~r~~~DpED~~D~~YL~eT   71 (74)
                      ..+.+|+| ..++|-+||.|+++++.+..    +..+++++||+| ++|++.+
T Consensus       285 ~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~----~~~~~~~~~~~~-~~y~~~~  332 (498)
T 3qb0_A          285 EEIVFDNETRYGFAEELFLPKEDDIPANW----PRSNSGVVKTWR-NDYVPLK  332 (498)
T ss_dssp             CEEEECHHHHHHHHHTTTSCCGGGSCTTS----CCCSSSCCCCCS-CCCCCCC
T ss_pred             CEEEECchHhhhCchhhCCHhHcCCcccc----cccccccccccc-ccccccc
Confidence            46789999 99999999999999986542    125589999999 8898664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00