Psyllid ID: psy9591

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MINQMFMRLMICQKPTRAPRSMMTRTSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSGELVRYQLGLQSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKALKK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHccccccccccccccHHHHcccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHccccccccccccccccccEEEEEcHHHHHHHHcccEEccccccccccccccccccEEcccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MINQMFMRLMicqkptraprsmmtRTSENIEQLHLDAKQATlkfkdktisvnradfsDSLNKLHKYGYDVLSQDWELVAqgeketplQKYQRLQCELKELMDEVSQikepaensasdkakLSVQQIEELVSQVSAIkldkilgpdlleslSDVEGAALKTLVMRLDsfalsnsktpsskggvgsgELVRYQLGLQSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENllgehsssvcklfggghnslveNTDWLRAQINLIdaahcdayDARITHLSNKLDKIIEKansvdpkdserdQRVNELYELSrsvdsalvPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLegkmgsdvERIKQDVKALDEKIKALKK
Flexible Loop (DISEMBL)
MINQMFMRLMicqkptrapRSMMTRTSENIEQLHLDAKQAtlkfkdktisvnradfsdslNKLHKYGYDVLSQDWELVAQGEKETPLQKYQRLQCELKELMDEVSQIKepaensasdkaKLSVQQIEELVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDSfalsnsktpsskggvGSGELVRYQLGLQSQQAQLNTAAKLTSLEQRLIKLEnllgehsssVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEkansvdpkdserdqRVNELyelsrsvdsalvPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLtslegkmgsdveRIKQDVkaldekikalkk
Low Complexity Region (SEG)
MINQMFMRLMICQKPTRAPRSMMTRTSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSGELVRYQLGLQSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDlasnltnnqslltslEGKMGSDVERIKQDVKALDEKIKALKK
Disordered region (IsUnstruct)
********LMI*****************************TLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG********YQRLQC******************************IEELVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDSFA*****************LVRYQLGL*******NTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKII**************************VDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLAS***************************************
Disordered Region (DISOPRED)
****MFM****************************DAKQATLKFKDKTISVNRADFSD*L****************************KYQRLQCELKE************************************************************************************************************TSLEQRLI*************************************************************************************************YELSRSVDSALVPRTLERLIALESLHA*****************************LTS**GK*****ERI*QDVKALDEKIKAL**
Disordered Region (DISEMBL)
MINQMFMRLMICQKPTRAPRSMMTRTSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETPLQKYQRLQCELKELMDEVSQ****************VQQIEELVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDSFALS***********GSGELVRYQLGLQSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANS**********RVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKALKK
Disordered Region (DISPRO)
MINQMFMRLMICQK*T***********ENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETPLQKYQRLQCELKELMDEVSQIKEPAENS**DKAKLSVQQIEELVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDSFAL**************GELVRYQLGLQSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKALKK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MINQMFMRLMICQKPTRAPRSMMTRTSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSGELVRYQLGLQSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKALKK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	399	2.2.26 [Sep-21-2011]
Q3ZCF0	403	Dynactin subunit 2 OS=Bos	yes	N/A	0.882	0.873	0.328	9e-41
Q66J30	403	Dynactin subunit 2-A OS=X	N/A	N/A	0.887	0.878	0.309	1e-39
Q5FW42	405	Dynactin subunit 2 OS=Xen	yes	N/A	0.889	0.876	0.299	1e-38
Q99KJ8	402	Dynactin subunit 2 OS=Mus	yes	N/A	0.887	0.880	0.312	1e-38
Q6IRB3	403	Dynactin subunit 2-B OS=X	N/A	N/A	0.882	0.873	0.315	2e-38
Q7PZ25	387	Probable dynactin subunit	yes	N/A	0.839	0.865	0.289	2e-38
Q1HQF2	381	Probable dynactin subunit	N/A	N/A	0.832	0.871	0.294	3e-38
Q7T3H1	405	Dynactin subunit 2 OS=Dan	yes	N/A	0.877	0.864	0.317	5e-38
Q6AYH5	402	Dynactin subunit 2 OS=Rat	yes	N/A	0.887	0.880	0.315	6e-38
Q7K2D2	380	Probable dynactin subunit	yes	N/A	0.814	0.855	0.292	2e-35

>sp|Q3ZCF0|DCTN2_BOVIN Dynactin subunit 2 OS=Bos taurus GN=DCTN2 PE=2 SV=1

 Score =  167 bits (424), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 127/387 (32%), Positives = 215/387 (55%), Gaps = 35/387 (9%)

Query: 26  TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
           TS ++E + ++   A  KFKDK +     DFSD + K  + GY+  S ++E++ +G   K
Sbjct: 39  TSTSVEHIIVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYE--SGEYEMLGEGLGVK 96

Query: 84  ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
           ETP QKYQRL  E++EL  EV +IK   + SA+++    V   +Q+  L  Q+ A  L+K
Sbjct: 97  ETPQQKYQRLLHEVQELTTEVEKIKTTVKESATEEKLTPVVLAKQLAALKQQLVASHLEK 156

Query: 141 ILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSG-----ELVRYQLGLQ 195
           +LGPD   +L+D +GA  K L+++L+  A  NSK   S G   SG      LV Y+L  +
Sbjct: 157 LLGPDAAINLTDPDGALAKRLLLQLE--ATKNSKGTGSGGKTTSGTPPDSSLVTYELHSR 214

Query: 196 SQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNS 254
            +Q + + AAK+  LE+RL +LE       ++VR  +  +N L       C         
Sbjct: 215 PEQDKFSQAAKVAELEKRLTELE-------ATVRCDQDAQNPLSAGLQGAC--------- 258

Query: 255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYE 314
           L++  + L+A++  +D A  D  +AR+  +  K+++I +   SV+  D++   +V++LYE
Sbjct: 259 LMDTVELLQAKVGALDLAVLDQVEARLQSVLGKVNEIAKHKASVE--DADTQSKVHQLYE 316

Query: 315 LSR--SVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSL 372
             +  S  +A +P  ++RL+ ++ LH QA  F  LL  L++ Q  +A +L +N +LLT +
Sbjct: 317 TIQRWSPIAASLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMIACSLKDNATLLTQV 376

Query: 373 EGKMGSDVERIKQDVKALDEKIKALKK 399
           +  M  ++  I+ +   +DE++K L K
Sbjct: 377 QTTMCENLSTIEGNFANIDERMKKLGK 403

Modulates cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organization during mitosis. Involved in anchoring microtubules to centrosomes. May play a role in synapse formation during brain development.
Bos taurus (taxid: 9913)

>sp|Q66J30|DCT2A_XENLA Dynactin subunit 2-A OS=Xenopus laevis GN=dctn2-a PE=2 SV=1

 Score =  164 bits (414), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/385 (30%), Positives = 210/385 (54%), Gaps = 31/385 (8%)

Query: 26  TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
           TS ++E + ++   A  KFKDK +     DFSD + K  + GY+  S ++E++ +G   K
Sbjct: 39  TSTSVEHIIVNPNAAYDKFKDKKVGTRSLDFSDRITKSKRTGYE--SGEYEILGEGIGMK 96

Query: 84  ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
           ETP QKYQRL  E++EL  EV + +   + SA+++    V   +Q+  L  Q+ +  L+K
Sbjct: 97  ETPQQKYQRLLHEVQELTQEVEKTQSTVKESAAEEKLTPVALAKQVASLKQQLVSTHLEK 156

Query: 141 ILGPDLLESLSDVEGAALKTLVMRLDSFAL---SNSKTPSSKGGVGSGELVRYQLGLQSQ 197
           +LGPD   +L+D +GA  K L+ +LD+         K+P+   G  +  LV Y+L  + +
Sbjct: 157 LLGPDAAINLTDPDGALAKRLLTQLDAAKTRKNPEGKSPAKGPGPDTENLVTYELHCRPE 216

Query: 198 QAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNSLV 256
           Q + + AAK+  LE+RL       GE   +VR  +  +N L       C         L+
Sbjct: 217 QNKFSQAAKMAELEKRL-------GELEVAVRCDQDTQNPLTVGLQGSC---------LM 260

Query: 257 ENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELS 316
           +  + L+A++NL+D A  D  +AR+  +  K+++I +   +++  D+E   +V++LYE  
Sbjct: 261 DTVEILQAKVNLLDVASLDQVEARLQSVLGKMNEIAKHKAAIEDADTES--KVHQLYETV 318

Query: 317 RSVDS--ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG 374
           +  DS    +P+ ++RL+ L+ LH QA  F  LL  L++ Q  +A++L +N + L  ++ 
Sbjct: 319 QKWDSMSGTLPQVVQRLLTLKQLHEQAMQFGQLLTHLDTTQQMIANSLKDNTNALAMVQK 378

Query: 375 KMGSDVERIKQDVKALDEKIKALKK 399
            M  ++  ++ +   +D +IK L K
Sbjct: 379 AMKENLATVEDNFSNIDGRIKKLSK 403

Modulates cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organization during mitosis. Involved in anchoring microtubules to centrosomes. May play a role in synapse formation during brain development.

Xenopus laevis (taxid: 8355)

>sp|Q5FW42|DCTN2_XENTR Dynactin subunit 2 OS=Xenopus tropicalis GN=dctn2 PE=2 SV=1

 Score =  161 bits (407), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 210/384 (54%), Gaps = 29/384 (7%)

Query: 26  TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGE--K 83
           TS ++E + ++   A  KFKDK +     DFSD + K  + GY+  S ++E++ +G   K
Sbjct: 41  TSTSVEHIIVNPNAAYDKFKDKKVGTRGLDFSDRITKSKRTGYE--SGEYEILGEGIGIK 98

Query: 84  ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
           ETP QKYQRL  E++EL  EV + +   + SA+++    V   +Q+  L  Q+ +  L+K
Sbjct: 99  ETPQQKYQRLLHEIQELTQEVEKAQSTVKESAAEEKLTPVALAKQVAALKQQLVSTHLEK 158

Query: 141 ILGPDLLESLSDVEGAALKTLVMRLDSFAL---SNSKTPSSKGGVGSGELVRYQLGLQSQ 197
           +LGPD   +L+D +GA  K L+ +LD          K+P+   G  +   V Y+L  + +
Sbjct: 159 LLGPDAAINLTDPDGALAKRLLTQLDVAKTRKNPEGKSPAKGPGPDNENFVTYELHCRPE 218

Query: 198 QAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVE 257
           Q + + AAK+  LE+RL       GE  ++VR         +  +      G   + L++
Sbjct: 219 QNKFSQAAKMAELEKRL-------GELEAAVR--------NDQDTQNPLTVGLQGSCLMD 263

Query: 258 NTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSR 317
             + L+A++NL+D A  D  +AR+  +  K+++I +   +++  D+E   +V++LYE  +
Sbjct: 264 TVEILQAKVNLLDVASLDQVEARLQSVLGKMNEIAKHKAAIEDADTES--KVHQLYETVQ 321

Query: 318 SVDS--ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGK 375
             DS  + +P+ ++RL+ L+ LH QA  F  LL  L++ Q  ++++L +N + L  ++  
Sbjct: 322 KWDSMSSTLPQVVQRLLMLKQLHEQAMQFGQLLAHLDTTQQMISNSLKDNTNALAMVQKA 381

Query: 376 MGSDVERIKQDVKALDEKIKALKK 399
           M  ++  ++ +  ++D +IK L K
Sbjct: 382 MKENLATVEDNFTSIDARIKKLSK 405

Modulates cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organization during mitosis. Involved in anchoring microtubules to centrosomes. May play a role in synapse formation during brain development.

Xenopus tropicalis (taxid: 8364)

>sp|Q99KJ8|DCTN2_MOUSE Dynactin subunit 2 OS=Mus musculus GN=Dctn2 PE=1 SV=3

 Score =  160 bits (406), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/384 (31%), Positives = 216/384 (56%), Gaps = 30/384 (7%)

Query: 26  TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
           +S ++E + ++   A  KFKDK +     DFSD + K  + GY+  S D+E++ +G   K
Sbjct: 39  SSTSVEHIIVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYE--SGDYEMLGEGLGVK 96

Query: 84  ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
           ETP QKYQRL  E++EL  EV +IK   + SA+++    V   +Q+  L  Q+ A  L+K
Sbjct: 97  ETPQQKYQRLLHEVQELTTEVEKIKTTVKESATEEKLTPVVLAKQLAALKQQLVASHLEK 156

Query: 141 ILGPDLLESLSDVEGAALKTLVMRLDS--FALSNSKTPSSKGGVGSGELVRYQLGLQSQQ 198
           +LGPD   +L+D +GA  K L+++L++   +  +S   ++ G      LV Y+L  + +Q
Sbjct: 157 LLGPDAAINLADPDGALAKRLLLQLEATKSSKGSSGGKATAGAPPDSSLVTYELHSRPEQ 216

Query: 199 AQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNSLVE 257
            + + AAK+  LE+RL +LE       ++VR  +  +N L       C         L+E
Sbjct: 217 DKFSQAAKVAELEKRLTELE-------ATVRCDQDAQNPLSAGLQGAC---------LME 260

Query: 258 NTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSR 317
             + L+A+++ +D A  D  +AR+  +  K+++I +   SV+  D++   +V++LYE  +
Sbjct: 261 TVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASVE--DADTQNKVHQLYETIQ 318

Query: 318 --SVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGK 375
             S  ++ +P  ++RL+ ++ LH QA  F  LL  L++ Q  +AS+L +N +LLT ++  
Sbjct: 319 RWSPVASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMMASSLKDNTALLTQVQTT 378

Query: 376 MGSDVERIKQDVKALDEKIKALKK 399
           M  ++  ++ +  ++D ++K L K
Sbjct: 379 MRENLATVEGNFASIDARMKRLGK 402

Modulates cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organization during mitosis. Involved in anchoring microtubules to centrosomes. May play a role in synapse formation during brain development.

Mus musculus (taxid: 10090)

>sp|Q6IRB3|DCT2B_XENLA Dynactin subunit 2-B OS=Xenopus laevis GN=dctn2-b PE=2 SV=1

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 214/387 (55%), Gaps = 35/387 (9%)

Query: 26  TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
           TS ++E + ++   A  KFKDK +     DFSD + K  + GY+  S ++E++ +G   K
Sbjct: 39  TSTSVEHIIVNPNAAYDKFKDKKVGTRCLDFSDRITKSKRTGYE--SGEYEILGEGLGIK 96

Query: 84  ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
           ETP QKYQRL  E++EL  EV + +   + SA+++    V   +Q+  L  Q+ +  L+K
Sbjct: 97  ETPQQKYQRLLHEVQELTQEVEKTQSTLKESATEEKLTPVALAKQVAALKQQLVSTHLEK 156

Query: 141 ILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTP----SSKG-GVGSGELVRYQLGLQ 195
           +LGPD   +L+D +GA  K L+ +LD  A    K P    S+KG G  +  LV Y+L  +
Sbjct: 157 LLGPDAAINLTDPDGALAKRLLTQLD--AAKTRKDPEGKSSAKGPGPDNENLVTYELHCR 214

Query: 196 SQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNS 254
            +Q + + AAK+  LE+RL       GE  ++VR  +  +N L       C         
Sbjct: 215 PEQNKFSQAAKMAELEKRL-------GELEAAVRCDQDTQNPLTVGLQGSC--------- 258

Query: 255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYE 314
           L++  + L+A++NL+D A  D  +AR+  +  K+++I +   +++  D+E   +V++LYE
Sbjct: 259 LMDTVEILQAKVNLLDVASLDQVEARLQSVLGKMNEIAKHKATIEDADTES--KVHQLYE 316

Query: 315 LSRSVDSALV--PRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSL 372
             +  DS  +  P+ ++RL+ L+ LH QA  F  LL  L++ Q  ++++L +N + L  +
Sbjct: 317 TVQKWDSMSITLPQVVQRLLTLKQLHEQAMQFGQLLTHLDTTQQMISNSLKDNTNALAMV 376

Query: 373 EGKMGSDVERIKQDVKALDEKIKALKK 399
           +  M  ++  ++ +  ++D +IK L K
Sbjct: 377 QKAMKENLATVEDNFSSIDGRIKKLSK 403

Modulates cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organization during mitosis. Involved in anchoring microtubules to centrosomes. May play a role in synapse formation during brain development.

Xenopus laevis (taxid: 8355)

>sp|Q7PZ25|DCTN2_ANOGA Probable dynactin subunit 2 OS=Anopheles gambiae GN=Dmn PE=3 SV=3

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 205/377 (54%), Gaps = 42/377 (11%)

Query: 30  IEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETPLQK 89
           IE+LH+  K +  KF+ K ++    DFSD + + ++ GYD  S D+EL  +GE+ETPLQ+
Sbjct: 43  IERLHISTKDSIGKFRGKYLT-GEVDFSDGIGRKNRLGYDARSLDYELAGEGERETPLQR 101

Query: 90  YQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQ----VSAIKLDKILGPD 145
             RL+CE+ ELM+E+   +     +A +KA  S + +  +VS     + ++KL++++G +
Sbjct: 102 CHRLKCEMNELMEEIEASRADTGRTAEEKA--SHETVFGVVSTAKKVLESLKLEQVIGSE 159

Query: 146 LLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSGELVRYQLGLQSQQAQLNTAA 205
           ++   +    A  K L+ +++ +  + +   SS   V + ELV+              +A
Sbjct: 160 VVAGGAGGGDAEAKKLIAQIEEYRKTGA-VSSSDPKVVANELVQ--------------SA 204

Query: 206 KLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFG-GGHNSLVENTDWLRA 264
           ++  LE RL         H       +LE  +G     + +L G  G  +L+E    + A
Sbjct: 205 RVAQLEHRL---------H-------QLEVAVGAKPERISRLAGTTGTGNLIEAVQNISA 248

Query: 265 QINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS--A 322
           +  L+  +  D  + R+ +L  +++ I EK+N+   +D  R+Q++ ELYE+++S +    
Sbjct: 249 KAALLQPSQLDTIEQRLNNLLQQMNSIQEKSNATG-QDPNREQKILELYEIAKSTEPIVQ 307

Query: 323 LVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVER 382
           ++P  L R++ LESLH  A NF+ L  ELE+ Q  + + +  N++LLT ++     ++E 
Sbjct: 308 VLPDILNRMLTLESLHKYATNFSKLFAELETTQASILNGVAANKTLLTGVQEAFAQNLEN 367

Query: 383 IKQDVKALDEKIKALKK 399
           + ++VK L+E++  L++
Sbjct: 368 VNKEVKKLEERMTKLQQ 384

Modulates cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organization during mitosis.

Anopheles gambiae (taxid: 7165)

>sp|Q1HQF2|DCTN2_AEDAE Probable dynactin subunit 2 OS=Aedes aegypti GN=Dmn PE=2 SV=2

 Score =  159 bits (402), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 203/380 (53%), Gaps = 48/380 (12%)

Query: 27  SENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETP 86
           +E+IE+LH+  K +  KFK K ++ N  DFSD + K  + GYD +S +W+L  +GEKETP
Sbjct: 40  NESIERLHISTKDSYNKFKGKYLTGN-VDFSDRIGKKIRNGYDAVSGEWDLAGEGEKETP 98

Query: 87  LQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQ----VSAIKLDKIL 142
           +QK  RLQCE+ ELM+E++  +  A  +  +KA  S + + ++V      + ++KL++ +
Sbjct: 99  IQKCLRLQCEMNELMEEITASQADATKTKEEKA--SYEAVFDVVGTAKKVLESLKLEQAI 156

Query: 143 GPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSGELVRYQLGLQSQQAQLN 202
           G + +   ++ E    K L+ +++ +  S    P+                         
Sbjct: 157 GSETVAMGAETEA---KKLLTKIEEYKKSVGADPA------------------------K 189

Query: 203 TAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFG-GGHNSLVENTDW 261
           TA +L     R+ +LE+         RL +LE  +G     + +L G  G  +L+E    
Sbjct: 190 TATELV-YSSRIAELEH---------RLHELEVAVGAKPEKISRLAGSAGAGNLIEAVQS 239

Query: 262 LRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS 321
           + A+  L+     D  + R+ +L  K+  I EK+ +   +D+ R+Q++ ELYE++++ + 
Sbjct: 240 ISAKAALLQPQQLDLIETRLGNLLLKMAAIDEKSAATG-QDANREQKILELYEIAKTTEP 298

Query: 322 --ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSD 379
              ++P  L R+  LESLH  A NF+ L  ELE+ Q  +   + +N++LLT ++     +
Sbjct: 299 IVQILPDMLNRMQTLESLHKYATNFSKLFAELETTQASILKGIASNKTLLTGVQEAFAQN 358

Query: 380 VERIKQDVKALDEKIKALKK 399
           +E + ++VK LDE++K L++
Sbjct: 359 LENVNKEVKKLDERMKTLQE 378

Modulates cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organization during mitosis.

Aedes aegypti (taxid: 7159)

>sp|Q7T3H1|DCTN2_DANRE Dynactin subunit 2 OS=Danio rerio GN=dctn2 PE=2 SV=1

 Score =  159 bits (401), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 123/387 (31%), Positives = 217/387 (56%), Gaps = 37/387 (9%)

Query: 27  SENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EKE 84
           S+++E++ ++   A  KFKDK +S    DFSD ++K  + GY+  S D+EL+A+G   KE
Sbjct: 42  SDSVERIVVNPNAAYDKFKDKHVSAKSLDFSDRISKNRRVGYE--SGDYELLAEGCGVKE 99

Query: 85  TPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQ----VSAIKLDK 140
           TP QKYQRL  E+ EL  +V +I+   + S +++    V   ++        VSA  LD 
Sbjct: 100 TPQQKYQRLVNEIHELCQDVEKIQTSTKESGAEERLTPVALAQQAAQLKQQLVSA-HLDS 158

Query: 141 ILGPDLLESLSDVEGAALKTLVMRLD------SFALSNSKTPSSKGGVGSGELVRYQLGL 194
           +LGPD   +L+D +GA  K L+ +L+      S A ++ KT + KG  G   ++ Y+L  
Sbjct: 159 LLGPDAHINLTDPDGALAKRLLTQLEVARGVRSGAGADGKTAAPKGPDG---VILYELHS 215

Query: 195 QSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNS 254
           + +Q +   +AK+  LE+RL +LE  +G  S         +  G  SS V        +S
Sbjct: 216 RPEQEKFTESAKVAELERRLAELETAVGSGS---------DKRGPLSSGVQG------SS 260

Query: 255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYE 314
           L E  + L+A+++ +DAA  D  +AR+  +  K+++I +   +++  D+E   +V++LY+
Sbjct: 261 LTETLELLQARVSALDAATLDQVEARLQSVLGKMNEIAKHKATME--DAETQSKVSQLYD 318

Query: 315 LSRSVDSAL--VPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSL 372
           + +  D+    +P+ + RL A+  LH QA  F  LL  L++ Q  + ++L +N +LLT +
Sbjct: 319 VVQKWDAMATSLPQVVRRLTAVRELHEQAMQFGQLLTHLDTTQQMINNSLKDNSTLLTQV 378

Query: 373 EGKMGSDVERIKQDVKALDEKIKALKK 399
           +  M  ++  ++++  ALD+++K L K
Sbjct: 379 QQTMKENLLAVEENFSALDQRMKKLNK 405

Modulates cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organization during mitosis. Involved in anchoring microtubules to centrosomes. May play a role in synapse formation during brain development.

Danio rerio (taxid: 7955)

>sp|Q6AYH5|DCTN2_RAT Dynactin subunit 2 OS=Rattus norvegicus GN=Dctn2 PE=1 SV=1

 Score =  158 bits (400), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 121/384 (31%), Positives = 214/384 (55%), Gaps = 30/384 (7%)

Query: 26  TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
           +S ++E + ++   A  KFKDK +     DFSD + K  + GY+  S D+E++ +G   K
Sbjct: 39  SSTSVEHIIVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYE--SGDYEMLGEGLGVK 96

Query: 84  ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
           ETP QKYQRL  E++EL  EV +IK   + SA+++    V   +Q+  L  Q+ A  L+K
Sbjct: 97  ETPQQKYQRLLHEVQELTTEVEKIKTTVKESATEEKLTPVVLAKQLAALKQQLVASHLEK 156

Query: 141 ILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSGE--LVRYQLGLQSQQ 198
           +LGPD   +L+D +GA  K L+++L++   S   +     G    +  LV Y+L  + +Q
Sbjct: 157 LLGPDAAINLADPDGALAKRLLLQLEATKSSKGSSGGKSTGGTPPDSSLVTYELHSRPEQ 216

Query: 199 AQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNSLVE 257
            + + AAK+  LE+RL +LE       ++VR  +  +N L       C         L+E
Sbjct: 217 DKFSQAAKVAELEKRLTELE-------ATVRCDQDAQNPLSAGLQGAC---------LME 260

Query: 258 NTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSR 317
             + L+A++N +D A  D  +AR+  +  K+++I +   SV+  D++   +V++LYE  +
Sbjct: 261 TVELLQAKVNALDLAVLDQVEARLQSVLGKVNEIAKHKASVE--DADTQNKVHQLYETIQ 318

Query: 318 --SVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGK 375
             S  ++ +P  ++RL+ ++ LH QA  F  LL  L++ Q  +AS+L +N +LLT ++  
Sbjct: 319 RWSPVASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMMASSLKDNTALLTQVQTT 378

Query: 376 MGSDVERIKQDVKALDEKIKALKK 399
           M  ++  ++ +  ++D ++K L K
Sbjct: 379 MRENLATVEGNFASIDARMKKLGK 402

Modulates cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organization during mitosis. Involved in anchoring microtubules to centrosomes. May play a role in synapse formation during brain development.

Rattus norvegicus (taxid: 10116)

>sp|Q7K2D2|DCTN2_DROME Probable dynactin subunit 2 OS=Drosophila melanogaster GN=Dmn PE=1 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 190/373 (50%), Gaps = 48/373 (12%)

Query: 32  QLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVL-SQDWELVAQGEKETPLQKY 90
           +LH+    A  +F   T+     DF+D + +    GYD   S D+ELV QGEKETP+QK 
Sbjct: 45  RLHISPSVAHKRFSGATVE-GSVDFTDRIGRRMCRGYDTRGSSDYELVGQGEKETPVQKC 103

Query: 91  QRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQ----VSAIKLDKILGPDL 146
           QRLQ E+ EL++EV+ ++   +   +D+ K S   +  ++S     + ++KL+++LG + 
Sbjct: 104 QRLQIEMNELLNEVAALQ--VDRKVADEEKQSYDAVATVISTARKVLESLKLEQVLGKEQ 161

Query: 147 LESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSGELVRYQLGLQSQQAQLNTAAK 206
                 V     K L+ +++ F  S   T     G                   L   A+
Sbjct: 162 TPGSKQV-----KALISQVEEFKQSGVLTAIPTPGT-----------------DLAATAR 199

Query: 207 LTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQI 266
           + SLEQR+ +LE +LG         KL  L    +++          +++E    L  + 
Sbjct: 200 VASLEQRISQLEKVLGAQPD-----KLSRLTAATNTT----------NVLEAVRHLSTKA 244

Query: 267 NLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSA--LV 324
            LI     D  + R+T L+ K+D I EK+ S   +D++RDQ++ ELY++++  +    ++
Sbjct: 245 ALIQPDKLDTIEQRLTSLAGKMDAIAEKS-SGSAQDAKRDQKITELYDIAKRTEPVVEIL 303

Query: 325 PRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIK 384
           P  +ER+ ALE+LH  A NFA ++ E+E  Q  + ++L NN+ LL S++     ++E I 
Sbjct: 304 PHVIERMQALEALHKYANNFAKIIAEIEQKQGTITTSLVNNKELLHSVQETFAQNLETIN 363

Query: 385 QDVKALDEKIKAL 397
             V  +++++ A+
Sbjct: 364 SKVAKVEQRVAAI 376

Modulates cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organization during mitosis. May play a role in synapse formation during brain development.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
307175615	395	Probable dynactin subunit 2 [Camponotus	0.857	0.865	0.383	6e-57
332017130	405	Putative dynactin subunit 2 [Acromyrmex	0.887	0.874	0.366	3e-55
322784970	429	hypothetical protein SINV_11387 [Solenop	0.887	0.825	0.365	3e-53
332375458	397	unknown [Dendroctonus ponderosae]	0.877	0.881	0.336	5e-50
383857042	402	PREDICTED: probable dynactin subunit 2-l	0.884	0.878	0.335	1e-49
350417688	403	PREDICTED: probable dynactin subunit 2-l	0.882	0.873	0.329	1e-48
340712309	403	PREDICTED: probable dynactin subunit 2-l	0.882	0.873	0.327	3e-48
110755392	405	PREDICTED: probable dynactin subunit 2 [	0.877	0.864	0.323	4e-48
380014039	407	PREDICTED: probable dynactin subunit 2-l	0.889	0.872	0.325	8e-48
291225390	402	PREDICTED: dynactin 2-like [Saccoglossus	0.889	0.883	0.324	5e-44

>gi|307175615|gb|EFN65524.1| Probable dynactin subunit 2 [Camponotus floridanus]

 Score =  228 bits (580), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 234/386 (60%), Gaps = 44/386 (11%)

Query: 27  SENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETP 86
           S  +EQLH+ AK+A  KFK K I     DFSD L     +G      DWELV++GEKETP
Sbjct: 41  SSCVEQLHISAKEAFNKFKGKQIVGKPVDFSDRL-----FG------DWELVSEGEKETP 89

Query: 87  LQKYQRLQCELKELMDEVSQIKEPAENSASDK-AKLSVQQIEELVSQVSAIKLDKILGPD 145
           LQKYQRLQCE+KEL +EV+++KE +++    K A   + Q ++L  Q+ ++KL+  LGPD
Sbjct: 90  LQKYQRLQCEIKELYEEVNELKENSKDEVEIKSASEIISQAQQLEKQLISLKLEDCLGPD 149

Query: 146 LLESLSDVEGAALKTLVMRLDSFALSNSKTPSSK---------GGVGSGELVRYQLGLQS 196
           ++ SLSD +G  LK L+ +++ F  +N   P SK           V SG +++YQ+    
Sbjct: 150 VVASLSDPQGTMLKQLISQIELFKQAN--MPPSKLSSEDEKTDESVESG-VLKYQMMYFP 206

Query: 197 QQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKL-ENLLGEHSSSVCKLFGGGHNSL 255
           ++A++  AA++  LEQRL  LENL+G  +S+ +L K  +NL  E               +
Sbjct: 207 EKARMQEAARIAQLEQRLCCLENLIG--TSNDKLSKFSQNLKCE--------------GI 250

Query: 256 VENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYEL 315
           +E    L A+I+L+D    D  + R+  L  ++D I +K  +++ +DSE++Q+++E+YE+
Sbjct: 251 MEAVQQLEAKISLLDVNQLDTIETRLGTLIYRMDSIAQKKAAME-QDSEQEQKISEMYEI 309

Query: 316 SRSVD--SALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLE 373
            +  D  S ++P+T+ERL+ L  +H QA  F+  L  LE +Q +++S L +N+SLL  ++
Sbjct: 310 MKKTDAISQILPQTVERLLTLSDIHQQAAAFSKSLIRLEELQTEISSGLDSNKSLLKGVQ 369

Query: 374 GKMGSDVERIKQDVKALDEKIKALKK 399
               S++E IK ++  LDE+IK LKK
Sbjct: 370 ESFASNMEVIKSNIALLDERIKKLKK 395

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017130|gb|EGI57929.1| Putative dynactin subunit 2 [Acromyrmex echinatior]

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 140/382 (36%), Positives = 234/382 (61%), Gaps = 28/382 (7%)

Query: 27  SENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETP 86
           S  +EQLH+ AK+A  KFK K I     DFSD L+   + GY     DWEL  +GEKETP
Sbjct: 41  SSCVEQLHISAKEAFNKFKGKQIVGKPVDFSDRLSNKPRTGYKF--GDWELAGEGEKETP 98

Query: 87  LQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV-QQIEELVSQVSAIKLDKILGPD 145
           LQK+QRLQCE+KEL +E++++KE +++    K+   +  Q +++  Q+ ++KL++ LGPD
Sbjct: 99  LQKFQRLQCEIKELYEELNELKEKSKDEEEIKSVSEIIAQAQQIEKQLVSLKLEECLGPD 158

Query: 146 LLESLSDVEGAALKTLVMRLDSF---ALSNSKTPSSKGG---VGSGELVRYQLGLQSQQA 199
           ++ SLSD +G  LK L+ +++ F   ++  +KT  SK     V  G L +YQ+    ++A
Sbjct: 159 VVASLSDPQGTILKQLISQIELFKQTSMPPTKTSESKKTDELVEPGTL-KYQMMYLPEKA 217

Query: 200 QLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENT 259
           ++  AA++  LEQRL  LEN++G  +S+ +L K    L       C+        ++E  
Sbjct: 218 RMQEAARIAQLEQRLCCLENIIG--TSNDKLSKFSQNLK------CQ-------GVMEAV 262

Query: 260 DWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSV 319
             L A+ +L+D    D  + R+  L  ++D I +K  + + ++SE++Q+++E+YE+ +  
Sbjct: 263 QQLEAKASLLDVNQLDTIETRLGTLIYRMDSIAQKRATTE-QESEQEQKISEMYEIMKKT 321

Query: 320 D--SALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMG 377
           D  S ++P+T+ERL+AL  +H QA  F+  L +LE +QV+++S L +N+SLL  ++    
Sbjct: 322 DAISQILPQTVERLLALSDIHQQAAAFSKSLIKLEELQVEISSGLESNKSLLKGVQESFA 381

Query: 378 SDVERIKQDVKALDEKIKALKK 399
           S++E IK ++  LDE++K L K
Sbjct: 382 SNMEVIKSNLALLDERVKKLNK 403

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322784970|gb|EFZ11741.1| hypothetical protein SINV_11387 [Solenopsis invicta]

 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 148/405 (36%), Positives = 236/405 (58%), Gaps = 51/405 (12%)

Query: 27  SENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGY--DV----LSQ--DWELV 78
           S  +EQLH+ AK+A  KFK K I     DFSD L+   + GY  D+    +S+  DWELV
Sbjct: 41  SSCVEQLHISAKEAFNKFKGKQIVGKPVDFSDRLSNKPRTGYKNDIDDTNISRFGDWELV 100

Query: 79  AQGEKETPLQKYQRLQCELKELMDEVSQIKEPAENSASDK-AKLSVQQIEELVSQVSAIK 137
            +GEKETPLQK+QRLQCE+KEL +E++++KE +++    K A   + Q  ++ +Q+ ++K
Sbjct: 101 GEGEKETPLQKFQRLQCEVKELYEEMNELKEKSKDEQEVKSASEIISQARQIETQLVSLK 160

Query: 138 LDKILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKG-------GVGSGELVRY 190
           L++ LGPD++ SLSD +G  LK LV +++ F    +  P SK         V  G +++Y
Sbjct: 161 LEECLGPDIVASLSDPQGTILKQLVSQIELF--KQTSVPPSKSEDNKTDESVEPG-VLKY 217

Query: 191 QLGLQSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGG 250
           Q+    ++A++  AA++  LEQRL  LEN++G  +S+ +L K    L       C     
Sbjct: 218 QMMYLPEKARMQEAARVAQLEQRLCCLENIIG--TSNDKLSKFSQNLK------C----- 264

Query: 251 GHNSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRV- 309
             N ++E    L A+ +L+D    D  + R+  L  ++D I  K  + + ++SE++Q+V 
Sbjct: 265 --NGIMEVVQQLEAKASLLDVNQLDTIETRLGTLIYRMDSIAHKKATTE-QESEQEQKVK 321

Query: 310 -------------NELYELSRSVD--SALVPRTLERLIALESLHAQAGNFATLLKELESV 354
                        +E+YE+ +  D  S ++P+T+ERL+AL  +H QA  F   L +LE +
Sbjct: 322 CQSVKISITLCLISEMYEIMKKTDAISQVLPQTVERLLALSDIHQQAAAFNKSLVKLEEL 381

Query: 355 QVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKALKK 399
           QVD+AS L +N+SLL  ++    S++E IK ++  LDE+IK L K
Sbjct: 382 QVDIASGLESNKSLLKGVQESFASNMEIIKGNIALLDERIKKLNK 426

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375458|gb|AEE62870.1| unknown [Dendroctonus ponderosae]

 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 226/380 (59%), Gaps = 30/380 (7%)

Query: 27  SENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETP 86
           +E +E+L + +++A  KFK K ++    DFS+ L K  + GYDV++ DWEL  QG++ETP
Sbjct: 39  NEPVEKLEISSEEAYNKFKGKFLNAANVDFSERLGKQFRTGYDVINGDWELAGQGKRETP 98

Query: 87  LQKYQRLQCELKELMDEVSQIKEPAENSASDKAKL----SVQQIEELVSQVSAIKLDKIL 142
           +QKYQRLQCE+KEL++EV+ +         D+ KL       Q+E+ +  ++ +KL++ L
Sbjct: 99  IQKYQRLQCEMKELLEEVNSL-----TVNKDEGKLDCLVPTDQVEQSLKLLADLKLEETL 153

Query: 143 GPDLLESLSDVEGAALKTLVMRLDSFA-LSNSKTPSSKGGVGSGELVRYQLGLQSQQAQL 201
           G +L+  +SD EG+ ++ L+ +L+ F  + N K    K     G  + YQ   + Q A+L
Sbjct: 154 GEELIAKISDPEGSQVRKLLAQLEEFKQVLNEKPEYEKNSNEEG--IIYQFNYRPQHAKL 211

Query: 202 NTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDW 261
              A++  LE RL +LE +LG  +SS +L +L       +++  K       SL+E   +
Sbjct: 212 QQTARIAELESRLHRLETVLG--ASSDKLSRL-------TTATNK------GSLLEAAQY 256

Query: 262 LRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVD- 320
           L A  +L+D++  D  + R++ LS KL  I +K   + P+D E+D+ + ELY+  ++ + 
Sbjct: 257 LSATASLLDSSQLDHIEGRLSALSQKLQVIGQKKKEL-PQDEEKDKMILELYDQLKNTET 315

Query: 321 -SALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSD 379
            + ++P+T+ERL +LE+LH +A  F   L ++E +Q ++ S++ NN++LL  ++    ++
Sbjct: 316 LTKILPQTVERLKSLEALHNKATEFTKTLTQMELIQSEIGSSVQNNKTLLQGVQESFATN 375

Query: 380 VERIKQDVKALDEKIKALKK 399
           +  + Q V  LD +IK L++
Sbjct: 376 LNEMNQKVVNLDSRIKTLQQ 395

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857042|ref|XP_003704015.1| PREDICTED: probable dynactin subunit 2-like [Megachile rotundata]

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/382 (33%), Positives = 230/382 (60%), Gaps = 29/382 (7%)

Query: 28  ENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETPL 87
           ++I +LH+ A +A  KFK K +     DFSD ++   + GY +  +DWEL  +GEKETP+
Sbjct: 40  DSIAKLHISATEAFNKFKGKQVDGEAIDFSDRISSKPRTGYKI--RDWELPGEGEKETPI 97

Query: 88  QKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKLDKILGPDLL 147
           QKYQRLQCE+KEL +EV+ +KE  EN+ +      + Q++ L  Q+ ++KL++ LG DL+
Sbjct: 98  QKYQRLQCEIKELYEEVNDLKE-NENADNTSVIDIISQVQHLEKQLDSLKLEECLGADLI 156

Query: 148 ESLSDVEGAALKTLVMRLDSFALSN-------SKTPSSKGG-VGSGELVRYQLGLQSQQA 199
            +LSD +G  LK L+ ++++F  +N       SK  S K        +++YQ+    ++A
Sbjct: 157 ATLSDPQGTRLKQLISQIEAFKQTNIPASQSDSKEQSMKTDKAAENGILKYQMMYLPEKA 216

Query: 200 QLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENT 259
           ++  AA++  LEQRL  LE+++G  +++ +L K    L       C+        ++E  
Sbjct: 217 RMQEAARIALLEQRLCNLESVIG--TATDKLDKFSRNLK------CQ-------GIMEAV 261

Query: 260 DWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSV 319
             L A+  L+D    D  ++R+  + +K+D I +K  ++   DSE++Q+++E+Y++ +  
Sbjct: 262 QELGAKAALLDMYQLDIIESRLATVIHKMDNIQQKKVALS-LDSEQEQKISEMYDIMKQT 320

Query: 320 D--SALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMG 377
           +  S ++P+T+ R++AL ++H QA  F+  L  LE +Q  + ++L +N+SLL  ++    
Sbjct: 321 ETMSHVLPQTVNRMLALNTIHQQAATFSKSLTRLEELQSQITTDLESNKSLLKGVQESFA 380

Query: 378 SDVERIKQDVKALDEKIKALKK 399
           S++E I+ ++++LDE+IK L K
Sbjct: 381 SNLEIIRTNIESLDERIKKLSK 402

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417688|ref|XP_003491545.1| PREDICTED: probable dynactin subunit 2-like [Bombus impatiens]

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/382 (32%), Positives = 232/382 (60%), Gaps = 30/382 (7%)

Query: 27  SENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETP 86
           +++IE+LH  A +A +KFK+K       DFSD ++   + GY     DWEL  +GEKETP
Sbjct: 39  TDSIEKLHTSATEAFIKFKNKRFLSKEVDFSDRISLKPRTGYKF--GDWELPGEGEKETP 96

Query: 87  LQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKLDKILGPDL 146
           +QKYQRLQCE+KEL +EV+ +KE ++          + Q++ L  Q+ ++KL++ LG DL
Sbjct: 97  IQKYQRLQCEIKELYEEVNDLKEKSKEEKVKSVADIISQVQLLGKQLDSLKLEECLGADL 156

Query: 147 LESLSDVEGAALKTLVMRLDSF-------ALSNSKTPSSKGGVGSGE-LVRYQLGLQSQQ 198
           + +LSD +G  +K L+ ++++F       + ++SK+ ++K    +   +++YQ+    ++
Sbjct: 157 VATLSDPQGTRMKQLISQIEAFKQTSILTSETDSKSQNAKDDKATEPGVLKYQMMYLPEK 216

Query: 199 AQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKL-ENLLGEHSSSVCKLFGGGHNSLVE 257
           A++  AA++  LEQRL  LE+++G  ++S +L K  +NL G+               ++E
Sbjct: 217 ARMQEAARIALLEQRLCNLESVIG--TTSDKLSKFSQNLKGQ--------------GVME 260

Query: 258 NTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSR 317
               L A+  L+D    D  ++R+  L +++D + +K  ++   DSE++Q+++E+Y++ +
Sbjct: 261 ALQELGAKAALLDTYQLDIIESRLAALIHRMDNVAQKKAAL-TLDSEQEQKISEMYDIMK 319

Query: 318 SVD--SALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGK 375
             +  S ++P+T+ R++AL ++H QA  F   L  LE +Q  + S+L +N+SLL  ++  
Sbjct: 320 QTETISQILPQTVNRMLALNTIHQQAATFNKSLTRLEELQSQITSDLESNKSLLKGVQES 379

Query: 376 MGSDVERIKQDVKALDEKIKAL 397
             S++E IK ++++LDE+IK L
Sbjct: 380 FASNLEIIKSNIESLDERIKKL 401

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712309|ref|XP_003394704.1| PREDICTED: probable dynactin subunit 2-like [Bombus terrestris]

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 231/382 (60%), Gaps = 30/382 (7%)

Query: 27  SENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETP 86
           +++IE+LH  A +A +KFK+K       DFSD ++   + GY     DWEL  +GEKETP
Sbjct: 39  TDSIEKLHTSATEAFIKFKNKRFLSKEVDFSDRISLKPRTGYKF--GDWELPGEGEKETP 96

Query: 87  LQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKLDKILGPDL 146
           +QKYQRLQCE+KEL +EV+ +KE ++          + Q++ L   + ++KL++ LG DL
Sbjct: 97  IQKYQRLQCEIKELYEEVNDLKEKSKEEKVKSVADIISQVQLLGKHLDSLKLEECLGADL 156

Query: 147 LESLSDVEGAALKTLVMRLDSF-------ALSNSKTPSSKGGVGSGE-LVRYQLGLQSQQ 198
           + +LSD +G  +K L+ ++++F       + ++SK+ ++K    +   +++YQ+    ++
Sbjct: 157 IATLSDPQGTRMKQLISQIEAFKQTSILTSETDSKSQNAKDDKATEPGVLKYQMMYLPEK 216

Query: 199 AQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKL-ENLLGEHSSSVCKLFGGGHNSLVE 257
           A++  AA++  LEQRL  LE+++G  ++S +L K  +NL G+               ++E
Sbjct: 217 ARMQEAARIALLEQRLCNLESVIG--TTSDKLSKFSQNLKGQ--------------GVME 260

Query: 258 NTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSR 317
               L A+  L+D    D  ++R+  L +++D + +K  ++   DSE++Q+++E+Y++ +
Sbjct: 261 ALQELGAKAALLDTYQLDIIESRLAALIHRMDNVAQKKTAL-TLDSEQEQKISEMYDIMK 319

Query: 318 SVD--SALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGK 375
             +  S ++P+T+ R++AL ++H QA  F   L  LE +Q  + S+L +N+SLL  ++  
Sbjct: 320 QTETISQILPQTVNRMLALNTIHQQAATFNKSLTRLEELQSQITSDLESNKSLLKGVQES 379

Query: 376 MGSDVERIKQDVKALDEKIKAL 397
             S++E IK ++++LDE+IK L
Sbjct: 380 FASNLEIIKSNIESLDERIKKL 401

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110755392|ref|XP_395729.3| PREDICTED: probable dynactin subunit 2 [Apis mellifera]

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 126/390 (32%), Positives = 224/390 (57%), Gaps = 40/390 (10%)

Query: 27  SENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETP 86
           +++IE+LH+ A +A  KFK+K +     DFSD ++   + GY     DWEL  +GEKET 
Sbjct: 39  TDSIEKLHISATEAFNKFKNKHVISKGVDFSDRVSLKPRTGYKF--GDWELPGEGEKETL 96

Query: 87  LQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKLDKILGPDL 146
           +QKYQRLQCE+KEL +EV+ +KE             + Q++ L  Q+ ++KL++ LG DL
Sbjct: 97  IQKYQRLQCEIKELYEEVNDLKEKMGEDEVKSVAGVISQVQLLEKQLDSLKLEECLGADL 156

Query: 147 LESLSDVEGAALKTLVMRLDSFA---------------LSNSKTPSSKGGVGSGELVRYQ 191
           + +LSD +G  +K L+ ++++F                + + KT  ++ GV     ++YQ
Sbjct: 157 VATLSDPQGTRMKQLISQIEAFKQTSILTSDTDSKMQNIKDDKTNKTEPGV-----LKYQ 211

Query: 192 LGLQSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGG 251
           +    ++A++  AA++  LEQRL  LE+++G  ++S +L K    L              
Sbjct: 212 MMYLPEKARMQEAARIALLEQRLCNLESIIG--TTSDKLSKFSQNLKSQ----------- 258

Query: 252 HNSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNE 311
              ++E    L A+  L+D    D  ++R+  L +++D I +K  ++   DSE++Q+++E
Sbjct: 259 --GVMEALQELGAKAALLDTYQLDIIESRLATLIHRMDNIAQKKTTL-TLDSEQEQKISE 315

Query: 312 LYELSRSVD--SALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLL 369
           +Y++ +  +  S ++P+T+ R++AL ++H QA  F   L  LE +Q  + S+L +N+SLL
Sbjct: 316 MYDIMKQTETMSQILPQTVNRMLALNTIHQQAATFNKSLTRLEELQSQITSDLESNKSLL 375

Query: 370 TSLEGKMGSDVERIKQDVKALDEKIKALKK 399
             ++    S++E IK ++++LDE+IK L K
Sbjct: 376 KGVQESFASNLEIIKNNIESLDERIKKLNK 405

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014039|ref|XP_003691051.1| PREDICTED: probable dynactin subunit 2-like [Apis florea]

 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 126/387 (32%), Positives = 229/387 (59%), Gaps = 32/387 (8%)

Query: 27  SENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETP 86
           +++IE+LH+ A +A  KFK+K +     DFSD ++   + GY     DWEL  +GEKET 
Sbjct: 39  TDSIEKLHISATEAFNKFKNKHVISKGVDFSDRVSLKPRTGYKF--GDWELPGEGEKETL 96

Query: 87  LQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLS--VQQIEELVSQVSAIKLDKILGP 144
           +QKYQRLQCE+KEL +EV+ +KE  +N   +   ++  + Q++ L  Q+ ++KL++ LG 
Sbjct: 97  IQKYQRLQCEIKELYEEVNDLKEIGKNGEDEVKSVAGVISQVQLLEKQLDSLKLEECLGT 156

Query: 145 DLLESLSDVEGAALKTLVMRLDSF---ALSNSKTPSSKGGVGSGEL-------VRYQLGL 194
           DL+ +LSD +G  +K L+ ++++F   ++  S T S    +   ++       ++YQ+  
Sbjct: 157 DLVATLSDPQGTRMKQLISQIEAFKQTSILTSDTDSKVQNIKDDKINKTEPGVLKYQMMY 216

Query: 195 QSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNS 254
             ++A++  AA++  LEQRL  LE+++G  ++S +L K    L                 
Sbjct: 217 LPEKARMQEAARIALLEQRLCNLESVIG--TTSDKLSKFSQNLKSQG------------- 261

Query: 255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYE 314
           ++E    L A+  L+D    D  ++R+  L +++D I +K  ++   DSE++Q+++E+Y+
Sbjct: 262 VMEALQELGAKAALLDTYQLDIIESRLATLIHRMDNIAQKKAAL-TLDSEQEQKISEMYD 320

Query: 315 LSRSVD--SALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSL 372
           + +  +  S ++P+T+ R++AL ++H QA  F   L  LE +Q  + S+L +N+SLL  +
Sbjct: 321 IMKQTETMSQILPQTVNRMLALNTIHQQAATFNKSLMRLEELQSQITSDLESNKSLLKGV 380

Query: 373 EGKMGSDVERIKQDVKALDEKIKALKK 399
           +    S++E IK ++++LDE+IK L K
Sbjct: 381 QESFASNLEIIKNNIESLDERIKKLNK 407

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291225390|ref|XP_002732686.1| PREDICTED: dynactin 2-like [Saccoglossus kowalevskii]

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 124/382 (32%), Positives = 211/382 (55%), Gaps = 27/382 (7%)

Query: 27  SENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQ--GEKE 84
           SE++E++ +    A  KFK+ ++     DFSD + K  K GYD    ++E+V +  G  E
Sbjct: 39  SESVERIAMPPNSAYKKFKNSSLDAGNLDFSDRIGKYRKTGYDTSKTEYEMVGEESGLPE 98

Query: 85  TPLQKYQRLQCELKELMDEVSQIKEPAENSA--SDKAKLSVQQIEELVSQVSAIKLDKIL 142
           TP+QKYQRLQ E++EL +EV QIK  A+  A  +D   L ++Q+  L  Q+ ++ L+K+L
Sbjct: 99  TPIQKYQRLQHEIRELSEEVEQIKTTAKEEAKVNDSPVLLIEQVHNLQDQLHSLHLEKLL 158

Query: 143 GPDLLESLSDVEGAALKTLVMRLDSF---ALSNSKTPSSKGGVGSGELVRYQLGLQSQQA 199
             + L  L+D +    K L+ +LD++   A S +K P ++       +V Y+L  + +QA
Sbjct: 159 TTEPLLDLADPQSQLPKKLLGQLDTYKKMAGSPTKKPEAQSATDGQHMV-YELYYKPEQA 217

Query: 200 QLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENT 259
           + +  + +  LEQRL KLE L+GE    + L++ E                  N LV+  
Sbjct: 218 KFSEVSMIAELEQRLAKLETLVGEDPQKLSLLRRET---------------QSNGLVDAV 262

Query: 260 DWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSV 319
             ++A+  L+D    +  DAR+  L  +L+ I  K  SV+  D  ++ R++ELY++    
Sbjct: 263 AVMQARTTLLDPIQLEHVDARLQGLLQRLNTIKTKKKSVE--DVSKESRISELYDMMERW 320

Query: 320 D--SALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMG 377
           D  +  +P+T+ERL +L+ LH QA  F+  L  L++ Q  ++S+L +  S +  L+    
Sbjct: 321 DGIAETLPKTVERLNSLQVLHNQALQFSQALSHLDTTQQQISSSLKSQYSTMKKLQDSFA 380

Query: 378 SDVERIKQDVKALDEKIKALKK 399
           S++  I+ +  +LDE++K LKK
Sbjct: 381 SNMAAIQANCASLDERLKKLKK 402

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
UNIPROTKB|E2QZ05	403	DCTN2 "Uncharacterized protein	0.882	0.873	0.315	1.1e-39
ZFIN|ZDB-GENE-040426-1279	406	dctn2 "dynactin 2 (p50)" [Dani	0.879	0.864	0.310	1.1e-39
UNIPROTKB|F5H223	378	DCTN2 "Dynactin subunit 2" [Ho	0.907	0.957	0.306	1.8e-39
UNIPROTKB|Q6IRB3	403	dctn2-b "Dynactin subunit 2-B"	0.882	0.873	0.307	3.7e-39
UNIPROTKB|Q3ZCF0	403	DCTN2 "Dynactin subunit 2" [Bo	0.882	0.873	0.315	4.8e-39
UNIPROTKB|Q66J30	403	dctn2-a "Dynactin subunit 2-A"	0.887	0.878	0.298	4.8e-39
UNIPROTKB|F5H2S7	406	DCTN2 "Dynactin subunit 2" [Ho	0.882	0.866	0.309	6.1e-39
UNIPROTKB|Q13561	401	DCTN2 "Dynactin subunit 2" [Ho	0.882	0.877	0.309	6.1e-39
RGD|1303182	402	Dctn2 "dynactin 2 (p50)" [Ratt	0.887	0.880	0.307	6.1e-39
UNIPROTKB|I3LN31	402	LOC100519091 "Uncharacterized	0.882	0.875	0.310	7.8e-39

UNIPROTKB|E2QZ05 DCTN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 122/387 (31%), Positives = 205/387 (52%)

Query:    26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
             TS ++E + ++   A  KFKDK +     DFSD + K  + GY+  S ++E++ +G   K
Sbjct:    39 TSTSVEHIIVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYE--SGEYEMLGEGLGVK 96

Query:    84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
             ETP QKYQRL  E++EL  EV +IK   + SA+++    V   +Q+  L  Q+ A  L+K
Sbjct:    97 ETPQQKYQRLLHEVQELTTEVEKIKTSVKESATEEKLTPVVLAKQLAALKQQLVASHLEK 156

Query:   141 ILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSG-----ELVRYQLGLQ 195
             +LGPD   +L+D +GA  K L+++L+  A  NSK   S G    G      LV Y+L  +
Sbjct:   157 LLGPDAAINLTDPDGALAKRLLLQLE--ATKNSKGTGSGGKTTGGTPVDSNLVTYELHSR 214

Query:   196 SQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNS 254
              +Q + + AAK+  LE+RL +LE       ++VR  +  +N L       C         
Sbjct:   215 PEQDKFSQAAKVAELEKRLTELE-------ATVRCDQDAQNPLSAGLQGAC--------- 258

Query:   255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYE 314
             L+E  + L+A++N +D A  D  +AR+  +  K+++I +   SV+  D++   +V++LYE
Sbjct:   259 LMETVELLQAKVNALDLAVLDQVEARLQSVLGKVNEIAKHKASVE--DADTQSKVHQLYE 316

Query:   315 -LSR-SVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDXXXXXXXXXXXXXXX 372
              + R S  ++ +P  ++RL+ ++ LH QA  F  LL  L++ Q                 
Sbjct:   317 TIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMIASSLKDNTALLTQV 376

Query:   373 EGKMGSDVERIKQDVKALDEKIKALKK 399
             +  M  ++  I+ +   +DE++K L K
Sbjct:   377 QTTMRENLSTIEGNFANIDERMKQLGK 403

GO:0031982 "vesicle" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005869 "dynactin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

ZFIN|ZDB-GENE-040426-1279 dctn2 "dynactin 2 (p50)" [Danio rerio (taxid:7955)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 120/386 (31%), Positives = 209/386 (54%)

Query:    27 SENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EKE 84
             S+++E++ ++   A  KFKDK +S    DFSD ++K  + GY+  S D+EL+A+G   KE
Sbjct:    43 SDSVERIVVNPNAAYDKFKDKHVSAKGLDFSDRISKNRRVGYE--SGDYELLAEGCGVKE 100

Query:    85 TPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDKI 141
             TP QKYQRL  E+ EL  +V +I+   + S +++    V   QQ  +L  Q+ +  LD +
Sbjct:   101 TPQQKYQRLVNEIHELCQDVEKIQTSTKESGAEERLTPVALAQQAAQLKQQLVSAHLDSL 160

Query:   142 LGPDLLESLSDVEGAALKTLVMRLD------SFALSNSKTPSSKGGVGSGELVRYQLGLQ 195
             LGPD   +L+D +GA  K L+ +L+      S A ++ KT + KG  G   ++ Y+L  +
Sbjct:   161 LGPDAHINLTDPDGALAKRLLTQLEVARGVRSGAGADGKTAAPKGPDG---VILYELHSR 217

Query:   196 SQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSL 255
              +Q +   +AK+  LE+RL +LE  +G  S            G  SS V      G +SL
Sbjct:   218 PEQEKFTESAKVAELERRLAELETAVGSGSDK---------RGPLSSGV-----QG-SSL 262

Query:   256 VENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYEL 315
              E  + L+A+++ +DAA  D  +AR+  +  K+++I +   +++  D+E   +V++LY++
Sbjct:   263 TETLELLQARVSALDAATLDQVEARLQSVLGKMNEIAKHKATME--DAETQSKVSQLYDV 320

Query:   316 SRSVDSAL--VPRTLERLIALESLHAQAGNFATLLKELESVQVDXXXXXXXXXXXXXXXE 373
              +  D+    +P+ ++RL A+  LH QA  F  LL  L++ Q                 +
Sbjct:   321 VQKWDAMATSLPQVVQRLTAVRELHEQAMQFGQLLTHLDTTQQMINNSLKDNSTLLTQVQ 380

Query:   374 GKMGSDVERIKQDVKALDEKIKALKK 399
               M  ++  ++++  ALD+++K L K
Sbjct:   381 QTMKENLLAVEENFSALDQRMKKLNK 406

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005869 "dynactin complex" evidence=IEA

GO:0040023 "establishment of nucleus localization" evidence=IMP

GO:0030719 "P granule organization" evidence=IMP

GO:0031982 "vesicle" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0060117 "auditory receptor cell development" evidence=IMP

GO:0035088 "establishment or maintenance of apical/basal cell polarity" evidence=IMP

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0001754 "eye photoreceptor cell differentiation" evidence=IMP

GO:0045494 "photoreceptor cell maintenance" evidence=IMP

GO:0005815 "microtubule organizing center" evidence=IEA

UNIPROTKB|F5H223 DCTN2 "Dynactin subunit 2" [Homo sapiens (taxid:9606)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 121/395 (30%), Positives = 210/395 (53%)

Query:    16 TRAPRSMMTRTSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDW 75
             T   R++   TS ++E + ++   A  KFKDK +     DFSD + K  + GY+  S ++
Sbjct:     6 TEDSRTLEELTSTSVEHIIVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYE--SGEY 63

Query:    76 ELVAQG--EKETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELV 130
             E++ +G   KETP QKYQRL  E++EL  EV +IK   + SA+++    V   +Q+  L 
Sbjct:    64 EMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKIKTTVKESATEEKLTPVLLAKQLAALK 123

Query:   131 SQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGS---GEL 187
              Q+ A  L+K+LGPD   +L+D +GA  K L+++L+  A  NSK  S     G+     L
Sbjct:   124 QQLVASHLEKLLGPDAAINLTDPDGALAKRLLLQLE--ATKNSKGGSGGKTTGTPPDSSL 181

Query:   188 VRYQLGLQSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCK 246
             V Y+L  + +Q + + AAK+  LE+RL +LE       ++VR  +  +N L       C 
Sbjct:   182 VTYELHSRPEQDKFSQAAKVAELEKRLTELE-------TAVRCDQDAQNPLSAGLQGAC- 233

Query:   247 LFGGGHNSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERD 306
                     L+E  + L+A+++ +D A  D  +AR+  +  K+++I +   SV+  D++  
Sbjct:   234 --------LMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASVE--DADTQ 283

Query:   307 QRVNELYE-LSR-SVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDXXXXXXX 364
              +V++LYE + R S  ++ +P  ++RL+ ++ LH QA  F  LL  L++ Q         
Sbjct:   284 SKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMIANSLKD 343

Query:   365 XXXXXXXXEGKMGSDVERIKQDVKALDEKIKALKK 399
                     +  M  ++  ++ +  ++DE++K L K
Sbjct:   344 NTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK 378

GO:0005869 "dynactin complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|Q6IRB3 dctn2-b "Dynactin subunit 2-B" [Xenopus laevis (taxid:8355)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 119/387 (30%), Positives = 204/387 (52%)

Query:    26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGE--K 83
             TS ++E + ++   A  KFKDK +     DFSD + K  + GY+  S ++E++ +G   K
Sbjct:    39 TSTSVEHIIVNPNAAYDKFKDKKVGTRCLDFSDRITKSKRTGYE--SGEYEILGEGLGIK 96

Query:    84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
             ETP QKYQRL  E++EL  EV + +   + SA+++    V   +Q+  L  Q+ +  L+K
Sbjct:    97 ETPQQKYQRLLHEVQELTQEVEKTQSTLKESATEEKLTPVALAKQVAALKQQLVSTHLEK 156

Query:   141 ILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTP----SSKG-GVGSGELVRYQLGLQ 195
             +LGPD   +L+D +GA  K L+ +LD  A    K P    S+KG G  +  LV Y+L  +
Sbjct:   157 LLGPDAAINLTDPDGALAKRLLTQLD--AAKTRKDPEGKSSAKGPGPDNENLVTYELHCR 214

Query:   196 SQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNS 254
              +Q + + AAK+  LE+RL       GE  ++VR  +  +N L       C         
Sbjct:   215 PEQNKFSQAAKMAELEKRL-------GELEAAVRCDQDTQNPLTVGLQGSC--------- 258

Query:   255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYE 314
             L++  + L+A++NL+D A  D  +AR+  +  K+++I +   +++  D+E   +V++LYE
Sbjct:   259 LMDTVEILQAKVNLLDVASLDQVEARLQSVLGKMNEIAKHKATIEDADTE--SKVHQLYE 316

Query:   315 LSRSVDSALV--PRTLERLIALESLHAQAGNFATLLKELESVQVDXXXXXXXXXXXXXXX 372
               +  DS  +  P+ ++RL+ L+ LH QA  F  LL  L++ Q                 
Sbjct:   317 TVQKWDSMSITLPQVVQRLLTLKQLHEQAMQFGQLLTHLDTTQQMISNSLKDNTNALAMV 376

Query:   373 EGKMGSDVERIKQDVKALDEKIKALKK 399
             +  M  ++  ++ +  ++D +IK L K
Sbjct:   377 QKAMKENLATVEDNFSSIDGRIKKLSK 403

GO:0031982 "vesicle" evidence=ISS

UNIPROTKB|Q3ZCF0 DCTN2 "Dynactin subunit 2" [Bos taurus (taxid:9913)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 122/387 (31%), Positives = 205/387 (52%)

Query:    26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
             TS ++E + ++   A  KFKDK +     DFSD + K  + GY+  S ++E++ +G   K
Sbjct:    39 TSTSVEHIIVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYE--SGEYEMLGEGLGVK 96

Query:    84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
             ETP QKYQRL  E++EL  EV +IK   + SA+++    V   +Q+  L  Q+ A  L+K
Sbjct:    97 ETPQQKYQRLLHEVQELTTEVEKIKTTVKESATEEKLTPVVLAKQLAALKQQLVASHLEK 156

Query:   141 ILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSG-----ELVRYQLGLQ 195
             +LGPD   +L+D +GA  K L+++L+  A  NSK   S G   SG      LV Y+L  +
Sbjct:   157 LLGPDAAINLTDPDGALAKRLLLQLE--ATKNSKGTGSGGKTTSGTPPDSSLVTYELHSR 214

Query:   196 SQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNS 254
              +Q + + AAK+  LE+RL +LE       ++VR  +  +N L       C         
Sbjct:   215 PEQDKFSQAAKVAELEKRLTELE-------ATVRCDQDAQNPLSAGLQGAC--------- 258

Query:   255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYE 314
             L++  + L+A++  +D A  D  +AR+  +  K+++I +   SV+  D++   +V++LYE
Sbjct:   259 LMDTVELLQAKVGALDLAVLDQVEARLQSVLGKVNEIAKHKASVE--DADTQSKVHQLYE 316

Query:   315 -LSR-SVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDXXXXXXXXXXXXXXX 372
              + R S  +A +P  ++RL+ ++ LH QA  F  LL  L++ Q                 
Sbjct:   317 TIQRWSPIAASLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMIACSLKDNATLLTQV 376

Query:   373 EGKMGSDVERIKQDVKALDEKIKALKK 399
             +  M  ++  I+ +   +DE++K L K
Sbjct:   377 QTTMCENLSTIEGNFANIDERMKKLGK 403

GO:0030426 "growth cone" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005869 "dynactin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q66J30 dctn2-a "Dynactin subunit 2-A" [Xenopus laevis (taxid:8355)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 115/385 (29%), Positives = 201/385 (52%)

Query:    26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
             TS ++E + ++   A  KFKDK +     DFSD + K  + GY+  S ++E++ +G   K
Sbjct:    39 TSTSVEHIIVNPNAAYDKFKDKKVGTRSLDFSDRITKSKRTGYE--SGEYEILGEGIGMK 96

Query:    84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
             ETP QKYQRL  E++EL  EV + +   + SA+++    V   +Q+  L  Q+ +  L+K
Sbjct:    97 ETPQQKYQRLLHEVQELTQEVEKTQSTVKESAAEEKLTPVALAKQVASLKQQLVSTHLEK 156

Query:   141 ILGPDLLESLSDVEGAALKTLVMRLDSFALSNS---KTPSSKGGVGSGELVRYQLGLQSQ 197
             +LGPD   +L+D +GA  K L+ +LD+     +   K+P+   G  +  LV Y+L  + +
Sbjct:   157 LLGPDAAINLTDPDGALAKRLLTQLDAAKTRKNPEGKSPAKGPGPDTENLVTYELHCRPE 216

Query:   198 QAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNSLV 256
             Q + + AAK+  LE+RL       GE   +VR  +  +N L       C         L+
Sbjct:   217 QNKFSQAAKMAELEKRL-------GELEVAVRCDQDTQNPLTVGLQGSC---------LM 260

Query:   257 ENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELS 316
             +  + L+A++NL+D A  D  +AR+  +  K+++I +   +++  D+E   +V++LYE  
Sbjct:   261 DTVEILQAKVNLLDVASLDQVEARLQSVLGKMNEIAKHKAAIEDADTE--SKVHQLYETV 318

Query:   317 RSVDS--ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDXXXXXXXXXXXXXXXEG 374
             +  DS    +P+ ++RL+ L+ LH QA  F  LL  L++ Q                 + 
Sbjct:   319 QKWDSMSGTLPQVVQRLLTLKQLHEQAMQFGQLLTHLDTTQQMIANSLKDNTNALAMVQK 378

Query:   375 KMGSDVERIKQDVKALDEKIKALKK 399
              M  ++  ++ +   +D +IK L K
Sbjct:   379 AMKENLATVEDNFSNIDGRIKKLSK 403

GO:0031982 "vesicle" evidence=ISS

UNIPROTKB|F5H2S7 DCTN2 "Dynactin subunit 2" [Homo sapiens (taxid:9606)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 119/385 (30%), Positives = 206/385 (53%)

Query:    26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
             TS ++E + ++   A  KFKDK +     DFSD + K  + GY+  S ++E++ +G   K
Sbjct:    44 TSTSVEHIIVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYE--SGEYEMLGEGLGVK 101

Query:    84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
             ETP QKYQRL  E++EL  EV +IK   + SA+++    V   +Q+  L  Q+ A  L+K
Sbjct:   102 ETPQQKYQRLLHEVQELTTEVEKIKTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEK 161

Query:   141 ILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGS---GELVRYQLGLQSQ 197
             +LGPD   +L+D +GA  K L+++L+  A  NSK  S     G+     LV Y+L  + +
Sbjct:   162 LLGPDAAINLTDPDGALAKRLLLQLE--ATKNSKGGSGGKTTGTPPDSSLVTYELHSRPE 219

Query:   198 QAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNSLV 256
             Q + + AAK+  LE+RL +LE       ++VR  +  +N L       C         L+
Sbjct:   220 QDKFSQAAKVAELEKRLTELE-------TAVRCDQDAQNPLSAGLQGAC---------LM 263

Query:   257 ENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYE-L 315
             E  + L+A+++ +D A  D  +AR+  +  K+++I +   SV+  D++   +V++LYE +
Sbjct:   264 ETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASVE--DADTQSKVHQLYETI 321

Query:   316 SR-SVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDXXXXXXXXXXXXXXXEG 374
              R S  ++ +P  ++RL+ ++ LH QA  F  LL  L++ Q                 + 
Sbjct:   322 QRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMIANSLKDNTTLLTQVQT 381

Query:   375 KMGSDVERIKQDVKALDEKIKALKK 399
              M  ++  ++ +  ++DE++K L K
Sbjct:   382 TMRENLATVEGNFASIDERMKKLGK 406

GO:0005869 "dynactin complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|Q13561 DCTN2 "Dynactin subunit 2" [Homo sapiens (taxid:9606)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 119/385 (30%), Positives = 206/385 (53%)

Query:    26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
             TS ++E + ++   A  KFKDK +     DFSD + K  + GY+  S ++E++ +G   K
Sbjct:    39 TSTSVEHIIVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYE--SGEYEMLGEGLGVK 96

Query:    84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
             ETP QKYQRL  E++EL  EV +IK   + SA+++    V   +Q+  L  Q+ A  L+K
Sbjct:    97 ETPQQKYQRLLHEVQELTTEVEKIKTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEK 156

Query:   141 ILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGS---GELVRYQLGLQSQ 197
             +LGPD   +L+D +GA  K L+++L+  A  NSK  S     G+     LV Y+L  + +
Sbjct:   157 LLGPDAAINLTDPDGALAKRLLLQLE--ATKNSKGGSGGKTTGTPPDSSLVTYELHSRPE 214

Query:   198 QAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNSLV 256
             Q + + AAK+  LE+RL +LE       ++VR  +  +N L       C         L+
Sbjct:   215 QDKFSQAAKVAELEKRLTELE-------TAVRCDQDAQNPLSAGLQGAC---------LM 258

Query:   257 ENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYE-L 315
             E  + L+A+++ +D A  D  +AR+  +  K+++I +   SV+  D++   +V++LYE +
Sbjct:   259 ETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASVE--DADTQSKVHQLYETI 316

Query:   316 SR-SVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDXXXXXXXXXXXXXXXEG 374
              R S  ++ +P  ++RL+ ++ LH QA  F  LL  L++ Q                 + 
Sbjct:   317 QRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMIANSLKDNTTLLTQVQT 376

Query:   375 KMGSDVERIKQDVKALDEKIKALKK 399
              M  ++  ++ +  ++DE++K L K
Sbjct:   377 TMRENLATVEGNFASIDERMKKLGK 401

GO:0003774 "motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000776 "kinetochore" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0005869 "dynactin complex" evidence=IDA

GO:0007067 "mitosis" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0031982 "vesicle" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

RGD|1303182 Dctn2 "dynactin 2 (p50)" [Rattus norvegicus (taxid:10116)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 118/384 (30%), Positives = 204/384 (53%)

Query:    26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
             +S ++E + ++   A  KFKDK +     DFSD + K  + GY+  S D+E++ +G   K
Sbjct:    39 SSTSVEHIIVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYE--SGDYEMLGEGLGVK 96

Query:    84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
             ETP QKYQRL  E++EL  EV +IK   + SA+++    V   +Q+  L  Q+ A  L+K
Sbjct:    97 ETPQQKYQRLLHEVQELTTEVEKIKTTVKESATEEKLTPVVLAKQLAALKQQLVASHLEK 156

Query:   141 ILGPDLLESLSDVEGAALKTLVMRLDSFALSN-SKTPSSKGGVG-SGELVRYQLGLQSQQ 198
             +LGPD   +L+D +GA  K L+++L++   S  S    S GG      LV Y+L  + +Q
Sbjct:   157 LLGPDAAINLADPDGALAKRLLLQLEATKSSKGSSGGKSTGGTPPDSSLVTYELHSRPEQ 216

Query:   199 AQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNSLVE 257
              + + AAK+  LE+RL +LE       ++VR  +  +N L       C         L+E
Sbjct:   217 DKFSQAAKVAELEKRLTELE-------ATVRCDQDAQNPLSAGLQGAC---------LME 260

Query:   258 NTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYE-LS 316
               + L+A++N +D A  D  +AR+  +  K+++I +   SV+  D++   +V++LYE + 
Sbjct:   261 TVELLQAKVNALDLAVLDQVEARLQSVLGKVNEIAKHKASVE--DADTQNKVHQLYETIQ 318

Query:   317 R-SVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDXXXXXXXXXXXXXXXEGK 375
             R S  ++ +P  ++RL+ ++ LH QA  F  LL  L++ Q                 +  
Sbjct:   319 RWSPVASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMMASSLKDNTALLTQVQTT 378

Query:   376 MGSDVERIKQDVKALDEKIKALKK 399
             M  ++  ++ +  ++D ++K L K
Sbjct:   379 MRENLATVEGNFASIDARMKKLGK 402

GO:0000776 "kinetochore" evidence=ISO;IDA

GO:0003774 "motor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=ISO;IDA

GO:0005856 "cytoskeleton" evidence=TAS

GO:0005869 "dynactin complex" evidence=ISO;IDA

GO:0005874 "microtubule" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IDA

GO:0007067 "mitosis" evidence=ISO;IDA

GO:0008283 "cell proliferation" evidence=IEA;ISO

GO:0016020 "membrane" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0030426 "growth cone" evidence=IEA;ISO

GO:0031982 "vesicle" evidence=ISO;ISS

UNIPROTKB|I3LN31 LOC100519091 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 120/387 (31%), Positives = 206/387 (53%)

Query:    26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
             TS ++E + ++   A  KFKDK +     DFSD + K  + GY+  S ++E++ +G   K
Sbjct:    38 TSTSVEHIIVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYE--SGEYEMLGEGLGVK 95

Query:    84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
             ETP QKYQRL  E++EL  EV +IK   + SA+++    V   +Q+  L  Q+ A  L+K
Sbjct:    96 ETPQQKYQRLLHEVQELTTEVEKIKMTVKESATEEKLTPVVLAKQLAALKQQLVASHLEK 155

Query:   141 ILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSGE-----LVRYQLGLQ 195
             +LGPD   +L+D +GA  K L+++L+  A  N+K   S G   SG      LV Y+L  +
Sbjct:   156 LLGPDAAINLTDPDGALAKRLLLQLE--ATKNTKGAGSGGKTTSGSPPDSSLVTYELHSR 213

Query:   196 SQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNS 254
              +Q + + AAK+  LE+RL +LE       ++VR  +  +N L       C         
Sbjct:   214 PEQDKFSQAAKVAELEKRLTELE-------ATVRCDQDAQNPLSAGLQGAC--------- 257

Query:   255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYE 314
             L+E  + L+A+++ +D A  D  +AR+  +  K+++I +   SV+  D++   +V++LYE
Sbjct:   258 LMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASVE--DADTQSKVHQLYE 315

Query:   315 -LSR-SVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDXXXXXXXXXXXXXXX 372
              + R S  ++ +P  ++RL+ ++ LH QA  F  LL  L++ Q                 
Sbjct:   316 TIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMIACSLKDNATLLTQV 375

Query:   373 EGKMGSDVERIKQDVKALDEKIKALKK 399
             +  M  ++  ++ +   +DE++K L K
Sbjct:   376 QTTMRENLSTVEGNFANIDERMKKLGK 402

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005869 "dynactin complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6AYH5	DCTN2_RAT	No assigned EC number	0.3151	0.8872	0.8805	yes	N/A
Q9PTG6	DCTN2_CHICK	No assigned EC number	0.2971	0.8721	0.8656	yes	N/A
Q7K2D2	DCTN2_DROME	No assigned EC number	0.2922	0.8145	0.8552	yes	N/A
Q5FW42	DCTN2_XENTR	No assigned EC number	0.2994	0.8897	0.8765	yes	N/A
Q99KJ8	DCTN2_MOUSE	No assigned EC number	0.3125	0.8872	0.8805	yes	N/A
Q13561	DCTN2_HUMAN	No assigned EC number	0.3107	0.8872	0.8827	yes	N/A
Q28Y46	DCTN2_DROPS	No assigned EC number	0.2868	0.8145	0.8552	yes	N/A
Q3ZCF0	DCTN2_BOVIN	No assigned EC number	0.3281	0.8822	0.8734	yes	N/A
Q7PZ25	DCTN2_ANOGA	No assigned EC number	0.2891	0.8395	0.8656	yes	N/A
Q7T3H1	DCTN2_DANRE	No assigned EC number	0.3178	0.8771	0.8641	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	399
pfam04912	376	pfam04912, Dynamitin, Dynamitin	4e-57

>gnl|CDD|218324 pfam04912, Dynamitin, Dynamitin

 Score =  191 bits (486), Expect = 4e-57
 Identities = 112/379 (29%), Positives = 200/379 (52%), Gaps = 38/379 (10%)

Query: 26  TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGE--K 83
           T+E+IE++ +   +A  KFK + ++ +  DFSDS+ K  + GY +   ++E++ +G   K
Sbjct: 30  TNESIERISVSPSEAHKKFKGRKLNTSNVDFSDSIGKKKRKGYLMKQGEYEILGEGFSEK 89

Query: 84  ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAK--LSVQQIEELVSQVSAIKLDKI 141
           ETP+QK+QRLQ E+ EL++E+  I+   + S  +K         +E L  Q+  +KL+++
Sbjct: 90  ETPVQKFQRLQTEMNELLEEIQAIQSDVKESKEEKISTVALAGVVETLEKQLETLKLEQL 149

Query: 142 LGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSGELVRYQLGLQSQQAQL 201
           LG D +   SD +G   K L+ +L+ F  S +K+ S                   +Q +L
Sbjct: 150 LGSDTVIDSSDTQGNLSKKLLTQLEEFKKSTNKSASPDK----------------EQTKL 193

Query: 202 NTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDW 261
           + A+KL  LE+RL KLE  +G     +      + L   + S+          L+E    
Sbjct: 194 SQASKLAELEKRLHKLEAAIGNDPDKL------SRLTADTESLP---------LLEAVSR 238

Query: 262 LRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS 321
           + A+  L+D  H D  + R+  +  K++ I EK  +    D+  + +++ELYE+ +  D 
Sbjct: 239 ISAKAALLDPDHLDHIEQRLQSVLGKMESIDEKKAASL-ADANTESKISELYEIMKKWDP 297

Query: 322 AL--VPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSD 379
            +  +P  +ERL  L+SLH QA +F+  L  LE+ Q  + S+L +N++LL  ++     +
Sbjct: 298 VVEQLPDVVERLKTLKSLHEQASHFSQSLAHLETTQQTIESSLASNKNLLEEVQESFKQN 357

Query: 380 VERIKQDVKALDEKIKALK 398
           +E IK +V  L+ ++  L+
Sbjct: 358 LETIKDNVTKLEARVAKLQ 376

Dynamitin is a subunit of the microtubule-dependent motor complex and in implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS). Length = 376

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	399
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	100.0
KOG3958|consensus	371		100.0
PF07426	174	Dynactin_p22: Dynactin subunit p22; InterPro: IPR0	97.54
PRK04778	569	septation ring formation regulator EzrA; Provision	94.65
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	93.17
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	91.37
PRK03918	880	chromosome segregation protein; Provisional	89.49
PRK11637	428	AmiB activator; Provisional	87.74
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	87.44
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	87.36
PRK04863	1486	mukB cell division protein MukB; Provisional	85.49
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	83.96
PRK04778	569	septation ring formation regulator EzrA; Provision	83.64
PF10046	99	BLOC1_2: Biogenesis of lysosome-related organelles	83.48
PF14712	92	Snapin_Pallidin: Snapin/Pallidin	82.17
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	81.78
COG4942	420	Membrane-bound metallopeptidase [Cell division and	80.9
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	80.45
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	80.04

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=100.00  E-value=4.3e-76  Score=598.82  Aligned_cols=356  Identities=34%  Similarity=0.526  Sum_probs=322.0

Q ss_pred             ccccCCCCCccccCCCHHhHHhhccCCcccCCCCccccccccccccCccccCCceeeccCC--CCCCHHHHHHHHHHHHH
Q psy9591          21 SMMTRTSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EKETPLQKYQRLQCELK   98 (399)
Q Consensus        21 ~~~e~~s~~Ie~~~l~~~~Ar~kF~~~~vda~~vDFSD~I~~kr~~gY~~~sg~~ei~g~~--~~ET~~qKl~RL~rEve   98 (399)
                      +.+++.|++|++.+|+|++||+||+|+.||+++|||||||++|||+||++.+++||++|++  ++|||+|||+||+|||+
T Consensus        25 ~~~~~~~~~I~~~~l~~~~A~~kF~~~~vda~~vDFSd~i~~krr~~~~~~~~~~e~~g~~~~e~Es~~~kl~RL~~Ev~  104 (388)
T PF04912_consen   25 DDDEDESEDIERSRLNPDEARSKFKGARVDARGVDFSDRISKKRRSGYRSRSGEYEILGDDSSEKESPEQKLQRLRREVE  104 (388)
T ss_pred             CCccccccchhhcCCCHHHHHHHhCcCcCCCCCCCchhhcccccccccccCCCceeecCCCCCCcCCHHHHHHHHHHHHH
Confidence            5677899999999999999999999999999999999999999999999988999999995  89999999999999999


Q ss_pred             HHHHHHHhhccccccccchhhcCCH----HHHHHHHHHHHhhhcccccCccccccccchhHHHHHHHHHhhhhhccCCCC
Q psy9591          99 ELMDEVSQIKEPAENSASDKAKLSV----QQIEELVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDSFALSNSK  174 (399)
Q Consensus        99 EL~eE~~~~k~~~~~~~~~~~~~~~----~~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~~k~l~~ql~~~~~~~~~  174 (399)
                      ||++||+++++......  ++.+++    .++..|+++|+.|+++..+|+..+...++|++.+.++|+.+++.|+...+.
T Consensus       105 EL~eEl~~~~~~~~~~~--~e~~~~~~l~~~~~~L~~~L~~l~l~~~lg~~~~~~~~~~~~~~~~kl~~~l~~~k~~~~~  182 (388)
T PF04912_consen  105 ELKEELEKRKADSKESD--EEKISPEELAQQLEELSKQLDSLKLEELLGEETAQDLSDPQKALSKKLLSQLESFKSSSGA  182 (388)
T ss_pred             HHHHHHHHHhhcccccc--cccCChhhHHHHHHHHHHHHHHhhcccccchhhhcccccchhhHHHHHHHhhhhccccccc
Confidence            99999999987653222  233333    389999999999999998888777777889999999999999999744321


Q ss_pred             CCCCCCCCCCCCccceecccchhHHHhhhhhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCC
Q psy9591         175 TPSSKGGVGSGELVRYQLGLQSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNS  254 (399)
Q Consensus       175 ~~~~~~~~~~~~~vtye~~~~~~~~~~~~~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~  254 (399)
                          ...+..++.|||++||+|++.++.+++++|+||+||+.||++||+++  ++++.++   .          +..+.|
T Consensus       183 ----~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~~~--~~~~~l~---~----------~~~~~~  243 (388)
T PF04912_consen  183 ----GSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESALGIDS--DKMSSLD---S----------DTSSSP  243 (388)
T ss_pred             ----CCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHhCCCc--ccccccc---c----------cCCcch
Confidence                11234567899999999999999999999999999999999999966  5577776   2          346899


Q ss_pred             hHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC--CCCchHHHHHH
Q psy9591         255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS--ALVPRTLERLI  332 (399)
Q Consensus       255 L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~--~~LP~ll~RLr  332 (399)
                      |+++|+.|++|+++|++++||+|++||+.|++++++|++++... ..+.++++||++||++|++|++  ++||+||+||+
T Consensus       244 l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~-~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~  322 (388)
T PF04912_consen  244 LLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEA-KEDAEQESKIDELYEILPRWDPYAPSLPSLVERLK  322 (388)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccc-cccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999877762 3678999999999999999999  99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591         333 ALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKALK  398 (399)
Q Consensus       333 sL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L~  398 (399)
                      +|+.||++|++|+++|.+|++.|.+|..++++|+++|++||++|.+|+++|++||+.||+||++|+
T Consensus       323 tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L~  388 (388)
T PF04912_consen  323 TLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKLQ  388 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999985

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>KOG3958|consensus

Probab=100.00  E-value=9.2e-65  Score=483.48  Aligned_cols=344  Identities=31%  Similarity=0.500  Sum_probs=312.9

Q ss_pred             CCCCCccccCCCCCccccCCCHHhHHhhccCCcccCCCCccccccccccccCccccCCceeeccCC--CCCCHHHHHHHH
Q psy9591          16 TRAPRSMMTRTSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EKETPLQKYQRL   93 (399)
Q Consensus        16 ~~~~~~~~e~~s~~Ie~~~l~~~~Ar~kF~~~~vda~~vDFSD~I~~kr~~gY~~~sg~~ei~g~~--~~ET~~qKl~RL   93 (399)
                      |++.++.+++.+++|++++++|+.|+.||+++++...++||||||++++|+||...+++||++|.|  .+|||.|||+||
T Consensus        20 q~~~~e~~e~t~~~ie~i~v~~~~a~kkfk~~~v~~~s~dfsD~i~k~~r~~y~~~s~~yEm~G~G~~~kETp~qK~qRl   99 (371)
T KOG3958|consen   20 QKSEPENDEPTHPDIELISVDPDEALKKFKNRVVNLTSSDFSDRIGKKRRHGYGNNSYVYEMLGEGLGVKETPQQKYQRL   99 (371)
T ss_pred             hccccccCCCCCCCeeeeeechhHHHHHhhcceeccCcccchHHHHhhhhhccCCCcceeeeeccCcCcccCHHHHHHHH
Confidence            344555677889999999999999999999999999999999999999999999988999999999  699999999999


Q ss_pred             HHHHHHHHHHHHhhccccccccchhhcCCHH----HHHHHHHHHHhhhcccccCccccccccchhHHHHHHHHHhhhhhc
Q psy9591          94 QCELKELMDEVSQIKEPAENSASDKAKLSVQ----QIEELVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDSFA  169 (399)
Q Consensus        94 ~rEveEL~eE~~~~k~~~~~~~~~~~~~~~~----~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~~k~l~~ql~~~~  169 (399)
                      .+||.||..|+++++...  ....+++.++.    ++..|.++|..+++++.+|+..     .|++.+.++++.|++.++
T Consensus       100 l~Ev~eL~~eve~ik~dk--~~a~Eek~t~~l~A~vla~lkk~l~al~leq~lGk~a-----tp~~~~vk~ll~q~E~~k  172 (371)
T KOG3958|consen  100 LHEVQELTTEVEKIKTDK--ESATEEKLTPVLLAKVLAALKKQLVALHLEQLLGKDA-----TPDGALVKRLLLQLEATK  172 (371)
T ss_pred             HHHHHHHHHHHHHHhhch--hhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCcHHHHHHHHHHHHhhc
Confidence            999999999999999883  22234556664    8999999999999999999876     599999999999999988


Q ss_pred             cCCCCCCCCCCCCCCCCccceecccchhHHHhhhhhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccC
Q psy9591         170 LSNSKTPSSKGGVGSGELVRYQLGLQSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFG  249 (399)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~vtye~~~~~~~~~~~~~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~  249 (399)
                      .+.. .   ++            .++|.+. |.+.+|+|+||+||.+||+.||...  +++++|+   +          +
T Consensus       173 ~sg~-~---t~------------~p~p~~d-~s~~akVA~LE~Rlt~lE~vvg~~~--d~~~~ls---a----------~  220 (371)
T KOG3958|consen  173 NSGK-T---TG------------TPRPEQD-FSQAAKVAELEKRLTELETVVGCDQ--DAQNPLS---A----------G  220 (371)
T ss_pred             ccCc-c---cC------------CCCCCcc-HHHHHHHHHHHHHHHHHHHHHcCCc--cccCchh---h----------c
Confidence            6532 1   11            1146665 8999999999999999999999998  7899998   3          4


Q ss_pred             CCCCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC--CCCchH
Q psy9591         250 GGHNSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS--ALVPRT  327 (399)
Q Consensus       250 ~~~~~L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~--~~LP~l  327 (399)
                      ..+.+++++|..|..++++|++..||.|++|++.++.++++|++++++ +..|.+.++||++||+++++|+|  ..||++
T Consensus       221 ~~~a~vletVe~L~~k~s~l~~~~ld~vEqRL~s~lgK~~~IaEk~~~-s~~Da~~d~KV~elye~~qrw~pi~stLP~~  299 (371)
T KOG3958|consen  221 LQGACVLETVELLQAKVSALDLAVLDQVEQRLQSVLGKVNEIAEKHKA-SVEDADTDSKVHELYETIQRWSPIASTLPEL  299 (371)
T ss_pred             cCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccchhhhhHHHHHHHHHhhhhHHHhhHHH
Confidence            577999999999999999999999999999999999999999987776 46889999999999999999999  999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcC
Q psy9591         328 LERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKALKK  399 (399)
Q Consensus       328 l~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L~k  399 (399)
                      |+||++|+.||++|.+|++.|.+|++.|..|...++++.++|..||.+|++|+.+|+++|+.||+||++|+|
T Consensus       300 V~rl~al~~LHeqa~~Fa~~lthl~t~q~~i~~sl~~n~ell~~vqtt~~qnl~tV~~k~a~ie~rva~l~k  371 (371)
T KOG3958|consen  300 VQRLVALKQLHEQAMQFAQLLTHLDTTQQMIANSLKDNTELLTQVQTTMRQNLATVEGKFASIEERVAKLGK  371 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999986

>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport

Probab=97.54  E-value=0.0037  Score=57.74  Aligned_cols=118  Identities=19%  Similarity=0.318  Sum_probs=77.6

Q ss_pred             hhhHHHHHHHHHHHHHHh-CCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcCCCchhHHHHHHH
Q psy9591         204 AAKLTSLEQRLIKLENLL-GEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDAAHCDAYDARIT  282 (399)
Q Consensus       204 ~~~ia~LE~RL~~LE~~l-G~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~~~~Ld~i~~Rl~  282 (399)
                      .+-+..||+||..||..| |....           .          ...+.+++..|......|+=....+     .||+
T Consensus         4 ~~~l~~Le~Ri~~LE~~v~G~~~~-----------~----------~~~~~~v~~~L~~~~~~L~~~~s~r-----e~i~   57 (174)
T PF07426_consen    4 MSALDILEKRIEELERRVYGENGS-----------K----------EGQPEKVIDSLLSVQSALNSAASKR-----ERIK   57 (174)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcc-----------c----------cCCchHHHHHHHHHHHHHHHHHccc-----HHHH
Confidence            456788999999999999 65431           0          1245678888887777776553332     4677


Q ss_pred             HHHHHHHHHHHhcC-------CCCC--------CCchhHHHHHHHHHhhhhcCC-------CCCchHHHHHHHHHHHHHH
Q psy9591         283 HLSNKLDKIIEKAN-------SVDP--------KDSERDQRVNELYELSRSVDS-------ALVPRTLERLIALESLHAQ  340 (399)
Q Consensus       283 ~L~~ele~l~~kk~-------~~~~--------~~~~~~~KI~eLY~~l~~~~~-------~~LP~ll~RLrsL~~LH~~  340 (399)
                      .+.++++.|.+-=-       ..+.        ...+.-.+..++++.+..++|       ..+|..-++|..|..+|.+
T Consensus        58 ~l~k~~~eL~~YLDP~~~e~~~l~~~~K~~~ILa~e~~i~~~~~~Leki~~L~pvL~se~i~~vp~~~~kL~~L~~~~~~  137 (174)
T PF07426_consen   58 ELFKRIEELNKYLDPNFIEEIQLPDSAKLQIILAEEDEIKSTAELLEKIKSLEPVLDSESIRNVPELCDKLQKLSQIHLE  137 (174)
T ss_pred             HHHHHHHHHHHHcCchhhhhcccchHHHHHHHHHccHHHHHHHHHHHHHHHhhhhcCcHHHhhhHHHHHHHHHHHHHHHH
Confidence            77777777754100       0000        122444456667777777666       7899999999999999987


Q ss_pred             HHHHHHH
Q psy9591         341 AGNFATL  347 (399)
Q Consensus       341 Aa~f~~~  347 (399)
                      ...-++.
T Consensus       138 Q~e~~~~  144 (174)
T PF07426_consen  138 QQEESEE  144 (174)
T ss_pred             HHHHHHH
Confidence            6654433

Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=94.65  E-value=1.6  Score=47.31  Aligned_cols=20  Identities=35%  Similarity=0.512  Sum_probs=13.7

Q ss_pred             hhhHHHHHHHHHHHHHHhCC
Q psy9591         204 AAKLTSLEQRLIKLENLLGE  223 (399)
Q Consensus       204 ~~~ia~LE~RL~~LE~~lG~  223 (399)
                      ..-+..++..+..|+..+-.
T Consensus       197 ~e~l~~l~~~~~~l~~~~~~  216 (569)
T PRK04778        197 REILDQLEEELAALEQIMEE  216 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34456778888888887743

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=93.17  E-value=3.5  Score=44.70  Aligned_cols=20  Identities=20%  Similarity=0.346  Sum_probs=14.8

Q ss_pred             hhhHHHHHHHHHHHHHHhCC
Q psy9591         204 AAKLTSLEQRLIKLENLLGE  223 (399)
Q Consensus       204 ~~~ia~LE~RL~~LE~~lG~  223 (399)
                      ..-+..++..+..|+..+-.
T Consensus       193 ~eil~~l~~~~~~l~~~~e~  212 (560)
T PF06160_consen  193 REILEKLKEETDELEEIMED  212 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34467788888888888854

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>TIGR00606 rad50 rad50

Probab=91.37  E-value=9.5  Score=45.50  Aligned_cols=65  Identities=12%  Similarity=0.189  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHH--HHHHHHHHHHHHhhc
Q psy9591         334 LESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLE---GKMGSDVERI--KQDVKALDEKIKALK  398 (399)
Q Consensus       334 L~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve---~~~~~N~~~v--~~nv~~Le~Ri~~L~  398 (399)
                      |..+..+.......+..++..+..+...|+..+.-+...+   ..+..|+...  +..+..++..|..|.
T Consensus       972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~ 1041 (1311)
T TIGR00606       972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHL 1041 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445578888899999999999988888877664   4688888888  888888888877663

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=89.49  E-value=25  Score=39.69  Aligned_cols=38  Identities=16%  Similarity=0.197  Sum_probs=22.6

Q ss_pred             hHHHHHHHHHhhhhcCC--CCCchHHHHHHHHHHHHHHHH
Q psy9591         305 RDQRVNELYELSRSVDS--ALVPRTLERLIALESLHAQAG  342 (399)
Q Consensus       305 ~~~KI~eLY~~l~~~~~--~~LP~ll~RLrsL~~LH~~Aa  342 (399)
                      ...++.++....+.+..  ..+..+..+++.+..++....
T Consensus       343 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~l~~~l~  382 (880)
T PRK03918        343 LKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLT  382 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34445555555665555  555666666767766666544

>PRK11637 AmiB activator; Provisional

Probab=87.74  E-value=23  Score=36.92  Aligned_cols=16  Identities=25%  Similarity=0.382  Sum_probs=7.3

Q ss_pred             hHHHHHHHHHHHHHHh
Q psy9591         206 KLTSLEQRLIKLENLL  221 (399)
Q Consensus       206 ~ia~LE~RL~~LE~~l  221 (399)
                      ++.++++.|..+++.+
T Consensus        48 ~l~~l~~qi~~~~~~i   63 (428)
T PRK11637         48 QLKSIQQDIAAKEKSV   63 (428)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444444

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=87.44  E-value=0.96  Score=45.71  Aligned_cols=63  Identities=25%  Similarity=0.401  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591         336 SLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG---KMGSDVERIKQDVKALDEKIKALK  398 (399)
Q Consensus       336 ~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~---~~~~N~~~v~~nv~~Le~Ri~~L~  398 (399)
                      .++.....++..+..|-....+....|...+..+..++.   +++..+....-+|.+||.||++|.
T Consensus        88 ~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE  153 (326)
T PF04582_consen   88 SLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE  153 (326)
T ss_dssp             ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence            344445555555555555555555555555555555553   467777888888888888888875

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=87.36  E-value=3  Score=40.09  Aligned_cols=115  Identities=15%  Similarity=0.206  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHhhcCC------CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC------CC
Q psy9591         256 VENTDWLRAQINLIDA------AHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS------AL  323 (399)
Q Consensus       256 ~~~l~~L~~qlslL~~------~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~------~~  323 (399)
                      -.-+..|.+++.+|..      ..|+.+..|+..+.+.++................+.||..|=..|.....      .-
T Consensus        35 E~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k  114 (237)
T PF00261_consen   35 EAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERK  114 (237)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445568888888852      24455555555555555444332221000112344455544444443322      22


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591         324 VPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLE  373 (399)
Q Consensus       324 LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve  373 (399)
                      +.-+-.||..   +......+-..+..++....++...|+.....|..+|
T Consensus       115 ~~E~~rkl~~---~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE  161 (237)
T PF00261_consen  115 YEEVERKLKV---LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLE  161 (237)
T ss_dssp             HHHCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhh
Confidence            2233333333   3333333344444444444444444444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK04863 mukB cell division protein MukB; Provisional

Probab=85.49  E-value=98  Score=37.82  Aligned_cols=25  Identities=16%  Similarity=0.323  Sum_probs=21.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHh
Q psy9591          82 EKETPLQKYQRLQCELKELMDEVSQ  106 (399)
Q Consensus        82 ~~ET~~qKl~RL~rEveEL~eE~~~  106 (399)
                      ...-.++++..|+.|.+++.+.+++
T Consensus       780 gr~are~~~~~l~~~~~~~~~~~~~  804 (1486)
T PRK04863        780 GRAAREKRIEQLRAEREELAERYAT  804 (1486)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466789999999999999999863

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=83.96  E-value=61  Score=34.16  Aligned_cols=72  Identities=15%  Similarity=0.142  Sum_probs=43.1

Q ss_pred             hhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcC------CCchhHH
Q psy9591         204 AAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLID------AAHCDAY  277 (399)
Q Consensus       204 ~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~------~~~Ld~i  277 (399)
                      -..++.++.++..|++.++..+.  ... ..             .+....++...+..|+.++..|.      +|.+-.+
T Consensus       217 ~~~l~~~~a~~~~l~~~l~~~~~--~~~-~~-------------~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l  280 (498)
T TIGR03007       217 RLELNEAIAQRDALKRQLGGEEP--VLL-AG-------------SSVANSELDGRIEALEKQLDALRLRYTDKHPDVIAT  280 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCC--CcC-cc-------------cccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHH
Confidence            44567888888888888876541  111 00             01234567777888888887764      3445555


Q ss_pred             HHHHHHHHHHHHHH
Q psy9591         278 DARITHLSNKLDKI  291 (399)
Q Consensus       278 ~~Rl~~L~~ele~l  291 (399)
                      .+++..|...+.+.
T Consensus       281 ~~qi~~l~~~l~~~  294 (498)
T TIGR03007       281 KREIAQLEEQKEEE  294 (498)
T ss_pred             HHHHHHHHHHHHhh
Confidence            56666555555443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=83.64  E-value=71  Score=34.71  Aligned_cols=144  Identities=13%  Similarity=0.236  Sum_probs=91.2

Q ss_pred             hhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcC-------------
Q psy9591         204 AAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLID-------------  270 (399)
Q Consensus       204 ~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~-------------  270 (399)
                      ...+..|..+|......||.-.    +..                      .-..++.|..+|..|.             
T Consensus       255 ~~~i~~l~~~i~~~~~~l~~l~----l~~----------------------~~~~~~~i~~~Id~Lyd~lekE~~A~~~v  308 (569)
T PRK04778        255 EKEIQDLKEQIDENLALLEELD----LDE----------------------AEEKNEEIQERIDQLYDILEREVKARKYV  308 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC----hHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777776654    332                      3333444444444442             


Q ss_pred             -------CCchhHHHHHHHHHHHHHHHHHHhcCCCCC------CCchhHHHHHHHHH-hhhhcCC--CCCchHHHHHHH-
Q psy9591         271 -------AAHCDAYDARITHLSNKLDKIIEKANSVDP------KDSERDQRVNELYE-LSRSVDS--ALVPRTLERLIA-  333 (399)
Q Consensus       271 -------~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~------~~~~~~~KI~eLY~-~l~~~~~--~~LP~ll~RLrs-  333 (399)
                             +..|+.+......|..+++.|.....-...      .-..+-..+.+-|. ....+..  ...-.+.+++.. 
T Consensus       309 ek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel  388 (569)
T PRK04778        309 EKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEI  388 (569)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence                   346777888888888888888764332100      01122333443343 3333433  335556666655 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591         334 ---LESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLE  373 (399)
Q Consensus       334 ---L~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve  373 (399)
                         |..++.+-..+...|..|.+...+....++.|+..|..+.
T Consensus       389 ~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik  431 (569)
T PRK04778        389 LKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK  431 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               7788888999999999999999999999999999988776

>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system []

Probab=83.48  E-value=13  Score=30.92  Aligned_cols=57  Identities=21%  Similarity=0.302  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHhh
Q psy9591         337 LHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG---KMGSDVERIKQDVKALDEKIKAL  397 (399)
Q Consensus       337 LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~---~~~~N~~~v~~nv~~Le~Ri~~L  397 (399)
                      +...|.+....+..|++....+..-+++.    +.+|+   .|...+..+..|.+.||.|+..|
T Consensus        40 ~~~~~~~l~~~~~~l~~k~~~l~~~l~~I----d~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~l   99 (99)
T PF10046_consen   40 MKDIAAGLEKNLEDLNQKYEELQPYLQQI----DQIEEQVTELEQTVYELDEYSKELESKFKKL   99 (99)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            34445566666666666665555554443    33333   37788899999999999999865

>PF14712 Snapin_Pallidin: Snapin/Pallidin

Probab=82.17  E-value=21  Score=28.86  Aligned_cols=58  Identities=16%  Similarity=0.313  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHhHHHHHHHHHHHHHHHHhhcC
Q psy9591         342 GNFATLLKELESVQVDLASNLTNNQSLLTSLEG------------------KMGSDVERIKQDVKALDEKIKALKK  399 (399)
Q Consensus       342 a~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~------------------~~~~N~~~v~~nv~~Le~Ri~~L~k  399 (399)
                      ..+-..|.++-+.|..+...|+....-|..+..                  +++..|..+...+..|..|+.+|.+
T Consensus        17 ~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~q   92 (92)
T PF14712_consen   17 DRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKLQQ   92 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            344455555666666666555555544443322                  3688888999999999999888864

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=81.78  E-value=47  Score=31.97  Aligned_cols=62  Identities=15%  Similarity=0.284  Sum_probs=37.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHHHHH
Q psy9591         273 HCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQ  340 (399)
Q Consensus       273 ~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~~LH~~  340 (399)
                      .|..|..|+..+..+|+.=...|..      ..++++..|++.+.+++..+---+-.|..+.+.|+..
T Consensus         6 KL~~i~e~~~~f~~~le~e~~~Rr~------~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~   67 (247)
T PF06705_consen    6 KLASINERFSGFESDLENEKRQRRE------QEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSK   67 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777777777777655544443      4556666666666666653334455555555555543

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=80.90  E-value=79  Score=33.32  Aligned_cols=132  Identities=22%  Similarity=0.337  Sum_probs=67.9

Q ss_pred             ChHHHHHHHHHHHhhcC------CCchhHHHHHHHHHHHHHHHHHHhcC----------------C--CC------CCCc
Q psy9591         254 SLVENTDWLRAQINLID------AAHCDAYDARITHLSNKLDKIIEKAN----------------S--VD------PKDS  303 (399)
Q Consensus       254 ~L~~~l~~L~~qlslL~------~~~Ld~i~~Rl~~L~~ele~l~~kk~----------------~--~~------~~~~  303 (399)
                      .|...|..++..++-|+      ...++.++++|..+...++.+...+.                +  .+      +.++
T Consensus        63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda  142 (420)
T COG4942          63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDA  142 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhcChhhh
Confidence            35555555555555554      34677777777777777766653221                1  01      1233


Q ss_pred             hhHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591         304 ERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFAT-----------LLKELESVQVDLASNLTNNQSLLTSL  372 (399)
Q Consensus       304 ~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~~LH~~Aa~f~~-----------~L~~Le~~q~~l~~~l~~~~~~L~~v  372 (399)
                      .....+--+|..|       .|...+|+.+|..--.+.+..-+           .+.+...++..+...+....+++..+
T Consensus       143 ~~~~R~ai~~~~l-------~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l  215 (420)
T COG4942         143 QRSVRLAIYYGAL-------NPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQL  215 (420)
T ss_pred             hHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555666654       47777777666544433333222           22333444444444444445555554


Q ss_pred             HHH----------HHHhHHHHHHHHHHHHH
Q psy9591         373 EGK----------MGSDVERIKQDVKALDE  392 (399)
Q Consensus       373 e~~----------~~~N~~~v~~nv~~Le~  392 (399)
                      +..          +..|...+..-|..+|.
T Consensus       216 ~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~  245 (420)
T COG4942         216 NSELSADQKKLEELRANESRLKNEIASAEA  245 (420)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            432          55555555555555553

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=80.45  E-value=59  Score=33.54  Aligned_cols=138  Identities=17%  Similarity=0.261  Sum_probs=79.7

Q ss_pred             ChHHHHHHHHHHHhhcC------C----------------CchhHHHHHHHHHHH-HHHHHHHhcCCCCCCCchhHHHHH
Q psy9591         254 SLVENTDWLRAQINLID------A----------------AHCDAYDARITHLSN-KLDKIIEKANSVDPKDSERDQRVN  310 (399)
Q Consensus       254 ~L~~~l~~L~~qlslL~------~----------------~~Ld~i~~Rl~~L~~-ele~l~~kk~~~~~~~~~~~~KI~  310 (399)
                      .-+..+-.|++||+.|.      +                +.|+.+++||..|.. .++.+..+-..       -..|++
T Consensus       206 ~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~-------L~~~~~  278 (388)
T PF04912_consen  206 QQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKS-------LLSELE  278 (388)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------HHHHHH
Confidence            34667778888888776      1                236667777777633 45555432221       112222


Q ss_pred             HHHHhhhhc----CC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-------
Q psy9591         311 ELYELSRSV----DS-ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNL---TNNQSLLTSLEGK-------  375 (399)
Q Consensus       311 eLY~~l~~~----~~-~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l---~~~~~~L~~ve~~-------  375 (399)
                      +|=+.-...    +. .-|-.|.+-|..+..++...=....+|..|.....+...-.   ...+.....|+..       
T Consensus       279 ~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~  358 (388)
T PF04912_consen  279 ELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEEL  358 (388)
T ss_pred             HHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222111111    22 56778888899999999888888888888887776554333   2233333334333       


Q ss_pred             HHHhHHHHHHHHHHHHHHHHhhc
Q psy9591         376 MGSDVERIKQDVKALDEKIKALK  398 (399)
Q Consensus       376 ~~~N~~~v~~nv~~Le~Ri~~L~  398 (399)
                      +..=-..+..|++.++..|+.|.
T Consensus       359 L~~ve~~~~~N~~~i~~n~~~le  381 (388)
T PF04912_consen  359 LNKVEEKFKENMETIEKNVKKLE  381 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222335667777777777663

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=80.04  E-value=22  Score=41.98  Aligned_cols=19  Identities=37%  Similarity=0.489  Sum_probs=12.2

Q ss_pred             hHHHHHHHHHHHHHHhCCC
Q psy9591         206 KLTSLEQRLIKLENLLGEH  224 (399)
Q Consensus       206 ~ia~LE~RL~~LE~~lG~~  224 (399)
                      ++..|+.+|..++..+...
T Consensus       668 ~l~~l~~~l~~~~~~~~~~  686 (1163)
T COG1196         668 ELKELEEELAELEAQLEKL  686 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5566777777777665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	399
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 69/433 (15%), Positives = 135/433 (31%), Gaps = 131/433 (30%)

Query: 10  MICQKPTRAPRSMMTRTSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYG-- 67
            +  K     +  +    E + +++     + +K + +  S+    + +  ++L+     
Sbjct: 70  TLLSKQEEMVQKFV----EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 68  ---YDVLSQDWELVAQGEKETPLQKYQRLQCELKELMDEVSQIKEPAENSA------SDK 118
              Y+V              + LQ Y +L+  L EL         PA+N        S K
Sbjct: 126 FAKYNV--------------SRLQPYLKLRQALLEL--------RPAKNVLIDGVLGSGK 163

Query: 119 AKLSVQ------QIEELVSQVSAIKLDKILGPD-LLESLSDVEGAALKTLVMRLDSFALS 171
             +++          ++  ++  + L     P+ +LE         L+ L+ ++D    S
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--------MLQKLLYQIDPNWTS 215

Query: 172 NSKTPSSKGGVGSGELVRYQLGLQSQQAQLNTAAKLTSLEQRLIKLEN------------ 219
            S   S             +L + S QA+L    K    E  L+ L N            
Sbjct: 216 RSDHSS-----------NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 220 ----------------LLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLR 263
                           L    ++ + L      L         L       L      L 
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLLL---KYLDCRPQDLP 319

Query: 264 AQ--------INLIDAAHCDAYDARITHL----SNKLDKIIEKA-NSVDPKDSERDQRVN 310
            +        +++I A       A   +      +KL  IIE + N ++P     + R  
Sbjct: 320 REVLTTNPRRLSII-AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA----EYR-- 372

Query: 311 ELYE-LSRSVDSALVP-RTLERL----------IALESLHAQ---AGNFATLLKELESVQ 355
           ++++ LS    SA +P   L  +          + +  LH               + S+ 
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 356 VDLASNLTNNQSL 368
           ++L   L N  +L
Sbjct: 433 LELKVKLENEYAL 445

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 8e-06
 Identities = 50/333 (15%), Positives = 104/333 (31%), Gaps = 78/333 (23%)

Query: 101 MD-EVSQIKEPAENSASD-----KAKLSVQQIEELVSQV-SAIKLDKILG-PD------- 145
           MD E  + +   ++  S            + ++++   + S  ++D I+   D       
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 146 LLESLSDVEGAALKTLV---MRLD-SFALSNSKTPSSKGGVGSGELVRYQLGLQSQQAQL 201
           L  +L   +   ++  V   +R++  F +S  KT   +    S     Y      Q+ +L
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP---SMMTRMYI----EQRDRL 119

Query: 202 -NTAAKLTSL----EQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLV 256
            N             Q  +KL   L E   +  ++            +  + G G   + 
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL------------IDGVLGSGKTWVA 167

Query: 257 ENTDWLRA---------QINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQ 307
            +     +         +I  ++  +C++ +  +  L   L +I     S     S    
Sbjct: 168 LDV--CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 308 RVNELY-ELSRSVDSALVPRTLERLIAL----ESLHAQAGNFA--TLLKELESVQVDLAS 360
           R++ +  EL R + S      L  L+ L     +    A N +   LL            
Sbjct: 226 RIHSIQAELRRLLKSKPYENCL--LV-LLNVQNAKAWNAFNLSCKILL------------ 270

Query: 361 NLTNNQSLLTSLEGKMGSDVERIKQDVKALDEK 393
             T  + +   L     + +  +      L   
Sbjct: 271 -TTRFKQVTDFLSAATTTHI-SLDHHSMTLTPD 301

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 62/440 (14%), Positives = 130/440 (29%), Gaps = 119/440 (27%)

Query: 1   MINQMF-MRLMICQKPTRAPRSMMTRTSENIEQL--HLDAKQATLKFKDKTISVNRADFS 57
           M  ++F + L  C  P     +++    E +++L   +D    +       I +      
Sbjct: 180 MDFKIFWLNLKNCNSP----ETVL----EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 58  DSLNKL-----HKYGYDVL-----SQDWE--------------------LVAQGEKETPL 87
             L +L     ++    VL     ++ W                     L A       L
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 88  QKYQR--LQCELKELMDEVSQIKE---PAENSASDKAKLSVQQIEELVS----------Q 132
             +       E+K L+ +    +    P E          +  I E +            
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--VLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 133 VSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDSFAL--SNSKTPSSKGGVGSGELVRY 190
           V+  KL  I+   L   L   E    + +    D  ++   ++  P+    +    L   
Sbjct: 350 VNCDKLTTIIESSL-NVLEPAE---YRKM---FDRLSVFPPSAHIPTI---L----LSLI 395

Query: 191 QLGLQSQQAQ--LNTAAKLTSLEQRLIKLENLLGEHSSSVRL-IKLENLLGEHSS----- 242
              +        +N   K + +E++    E+ +   S  + L +KLEN    H S     
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQ--PKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 243 -----------SVCKLFG------GGHNSLVENTD-------------WLRAQINLIDAA 272
                          L        G H   +E+ +             +L  +I     A
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 273 HCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLI 332
              +       + N L ++      +   D + ++ VN + +    ++  L+      L+
Sbjct: 514 WNASGS-----ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568

Query: 333 ALESLHAQAGNFATLLKELE 352
            +  +      F    K+++
Sbjct: 569 RIALMAEDEAIFEEAHKQVQ 588

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	399
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	89.12
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	83.06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	82.68
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	82.35

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=89.12  E-value=3.9  Score=32.73  Aligned_cols=73  Identities=12%  Similarity=0.173  Sum_probs=53.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHhHHHHHHH
Q psy9591         325 PRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSL------------------LTSLEGKMGSDVERIKQD  386 (399)
Q Consensus       325 P~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~------------------L~~ve~~~~~N~~~v~~n  386 (399)
                      |.+=+.+..+..+|.........+..++....+....++..+.+                  +..+...+.++.+.++..
T Consensus         1 ~~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~   80 (107)
T 1fxk_A            1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLR   80 (107)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            56667778888888888888888888887777777666665554                  444555677777777777


Q ss_pred             HHHHHHHHHhh
Q psy9591         387 VKALDEKIKAL  397 (399)
Q Consensus       387 v~~Le~Ri~~L  397 (399)
                      ++.|+.++..+
T Consensus        81 i~~le~~~~~~   91 (107)
T 1fxk_A           81 EKTIERQEERV   91 (107)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777776655

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=83.06  E-value=9.3  Score=30.89  Aligned_cols=73  Identities=19%  Similarity=0.216  Sum_probs=47.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHhHHHHHHH
Q psy9591         325 PRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSL------------------LTSLEGKMGSDVERIKQD  386 (399)
Q Consensus       325 P~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~------------------L~~ve~~~~~N~~~v~~n  386 (399)
                      |.+=+.+..++.+|.........+..++....+....++..+.+                  +..+...+.++.+.++..
T Consensus         6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~   85 (117)
T 2zqm_A            6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVR   85 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            34445666677777777777777777776666666655555443                  334445577777777777


Q ss_pred             HHHHHHHHHhh
Q psy9591         387 VKALDEKIKAL  397 (399)
Q Consensus       387 v~~Le~Ri~~L  397 (399)
                      ++.|+.++..+
T Consensus        86 i~~le~~~~~l   96 (117)
T 2zqm_A           86 LNALERQEKKL   96 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777766654

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=82.68  E-value=0.89  Score=51.73  Aligned_cols=19  Identities=11%  Similarity=0.352  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHhh
Q psy9591         379 DVERIKQDVKALDEKIKAL  397 (399)
Q Consensus       379 N~~~v~~nv~~Le~Ri~~L  397 (399)
                      ....+...+..|..+|+.+
T Consensus      1145 q~~~L~~ele~L~~~Ieel 1163 (1184)
T 1i84_S         1145 QKRDLSEELEALKTELEDT 1163 (1184)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555544

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=82.35  E-value=31  Score=31.96  Aligned_cols=25  Identities=24%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             HhhhhhhHHHHHHHHHHHHHHhCCC
Q psy9591         200 QLNTAAKLTSLEQRLIKLENLLGEH  224 (399)
Q Consensus       200 ~~~~~~~ia~LE~RL~~LE~~lG~~  224 (399)
                      .+..+-.+..+|.+|..|+..+|.-
T Consensus         6 ~L~~L~~LQ~lD~~i~~l~~~~~~l   30 (256)
T 3na7_A            6 HLKQLIEISHLDKEIDSLEPLIREK   30 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566788899999999999988663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00