Psyllid ID: psy9692

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFTMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTmtdvvgnpeeerrsdfyyqpwaeeaVCRYFYSKVQQKRAELEQALVYQFTmtdvvgnpeeerrsdfyyqpwaeeaVCRYFYSKVQQKRAELEQAL
Flexible Loop (DISEMBL)
SLDNKIHETVEtinslktnREFFLSfakdpqqfINKWIISQTRDLKTMTdvvgnpeeerrsdfyyqpWAEEAVCRYFYSKVQQKRAELEQALVYQFTmtdvvgnpeeerrSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL
Low Complexity Region (SEG)
SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFTMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL
Disordered region (IsUnstruct)
***********TINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVG*******SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFTMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKV***********
Disordered Region (DISOPRED)
SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDL****************DFYYQPWAEEAVCRYF*************************GNPEEERRSDFYYQPWAEEAVCRYFYSK************
Disordered Region (DISEMBL)
SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFTMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQ**********
Disordered Region (DISPRO)
SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFTMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAEL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFTMTDVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q96GM5	515	SWI/SNF-related matrix-as	yes	N/A	0.683	0.188	0.783	4e-41
Q61466	515	SWI/SNF-related matrix-as	yes	N/A	0.683	0.188	0.783	4e-41
Q2TBN1	515	SWI/SNF-related matrix-as	yes	N/A	0.683	0.188	0.762	2e-39
Q6P9Z1	483	SWI/SNF-related matrix-as	no	N/A	0.683	0.200	0.618	4e-33
Q6STE5	483	SWI/SNF-related matrix-as	no	N/A	0.683	0.200	0.618	4e-33
Q99JR8	531	SWI/SNF-related matrix-as	no	N/A	0.683	0.182	0.639	2e-32
Q92925	531	SWI/SNF-related matrix-as	no	N/A	0.683	0.182	0.649	2e-32
O54772	531	SWI/SNF-related matrix-as	no	N/A	0.683	0.182	0.639	3e-32
E1BJD1	531	SWI/SNF-related matrix-as	no	N/A	0.683	0.182	0.649	7e-32
Q9FMT4	534	SWI/SNF complex component	yes	N/A	0.528	0.140	0.447	6e-12

>sp|Q96GM5|SMRD1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens GN=SMARCD1 PE=1 SV=2

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 76/97 (78%), Positives = 86/97 (88%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           +LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLKTMTDVVGNPEEERR
Sbjct: 419 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERR 478

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
           ++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL  + T
Sbjct: 479 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515

Involved in chromatin remodeling. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity). Has a strong influence on the Vitamin D-mediated transcriptional activity from an enhancer Vitamin D receptor element (VDRE). May be a link between mammalian SWI-SNF-like chromatin remodeling complexes and the vitamin D receptor (VDR) heterodimer. Mediates critical interactions between nuclear receptors and the BRG1/SMARCA4 chromatin-remodeling complex for transactivation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene.
Homo sapiens (taxid: 9606)

>sp|Q61466|SMRD1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus musculus GN=Smarcd1 PE=1 SV=3

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 76/97 (78%), Positives = 86/97 (88%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           +LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLKTMTDVVGNPEEERR
Sbjct: 419 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERR 478

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
           ++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL  + T
Sbjct: 479 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515

Involved in chromatin remodeling. Has a strong influence on the Vitamin D-mediated transcriptional activity from an enhancer Vitamin D receptor element (VDRE). May be a link between mammalian SWI-SNF-like chromatin remodeling complexes and the vitamin D receptor (VDR) heterodimer. Mediates critical interactions between nuclear receptors and the BRG1/SMARCA4 chromatin-remodeling complex for transactivation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Mus musculus (taxid: 10090)

>sp|Q2TBN1|SMRD1_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1 PE=2 SV=1

 Score =  160 bits (406), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/97 (76%), Positives = 84/97 (86%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           +LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLK MTDVVGN EEERR
Sbjct: 419 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMTDVVGNSEEERR 478

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
           ++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL  + T
Sbjct: 479 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515

Involved in chromatin remodeling. Has a strong influence on the Vitamin D-mediated transcriptional activity from an enhancer Vitamin D receptor element (VDRE). May be a link between mammalian SWI-SNF-like chromatin remodeling complexes and the vitamin D receptor (VDR) heterodimer. Mediates critical interactions between nuclear receptors and the BRG1/SMARCA4 chromatin-remodeling complex for transactivation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Bos taurus (taxid: 9913)

>sp|Q6P9Z1|SMRD3_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Mus musculus GN=Smarcd3 PE=1 SV=2

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 81/97 (83%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           +LD+KIHET+E+IN LK  R+F LSF++DP+ ++   + SQ+RDLK MTDV GNPEEERR
Sbjct: 387 ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERR 446

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
           ++FY+QPW++EAV RYFY K+QQ+R ELEQ+LV + T
Sbjct: 447 AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 483

Plays a role in ATP dependent nucleosome remodeling by SMARCA4 containing complexes. Stimulates nuclear receptor mediated transcription (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Mus musculus (taxid: 10090)

>sp|Q6STE5|SMRD3_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Homo sapiens GN=SMARCD3 PE=1 SV=1

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 81/97 (83%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           +LD+KIHET+E+IN LK  R+F LSF++DP+ ++   + SQ+RDLK MTDV GNPEEERR
Sbjct: 387 ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERR 446

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
           ++FY+QPW++EAV RYFY K+QQ+R ELEQ+LV + T
Sbjct: 447 AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 483

Plays a role in ATP dependent nucleosome remodeling by SMARCA4 containing complexes. Stimulates nuclear receptor mediated transcription. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Homo sapiens (taxid: 9606)

>sp|Q99JR8|SMRD2_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Mus musculus GN=Smarcd2 PE=2 SV=2

 Score =  137 bits (345), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/97 (63%), Positives = 79/97 (81%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           SLD KIHET+E+IN LKT R+F LSF+ +PQ FI +W+ SQ RDLK +TDV+GNPEEERR
Sbjct: 435 SLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIITDVIGNPEEERR 494

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
           + FY+QPWA+EAV R+ ++KVQQ+R ELEQ L  + T
Sbjct: 495 AAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).

Mus musculus (taxid: 10090)

>sp|Q92925|SMRD2_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Homo sapiens GN=SMARCD2 PE=1 SV=3

 Score =  137 bits (344), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/97 (64%), Positives = 79/97 (81%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           SLD KIHET+E+IN LKT R+F LSF+ DPQ FI +W+ SQ RDLK +TDV+GNPEEERR
Sbjct: 435 SLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERR 494

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
           + FY+QPWA+EAV R+ ++KVQQ+R ELEQ L  + T
Sbjct: 495 AAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).

Homo sapiens (taxid: 9606)

>sp|O54772|SMRD2_RAT SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Rattus norvegicus GN=Smarcd2 PE=2 SV=3

 Score =  137 bits (344), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/97 (63%), Positives = 79/97 (81%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           SLD KIHET+E+IN LKT R+F LSF+ +PQ FI +W+ SQ RDLK +TDV+GNPEEERR
Sbjct: 435 SLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIITDVIGNPEEERR 494

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
           + FY+QPWA+EAV R+ ++KVQQ+R ELEQ L  + T
Sbjct: 495 AAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).

Rattus norvegicus (taxid: 10116)

>sp|E1BJD1|SMRD2_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Bos taurus GN=SMARCD2 PE=3 SV=1

 Score =  135 bits (340), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 63/97 (64%), Positives = 79/97 (81%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           SLD KIHET+E+IN LKT R+F LSF+ DPQ FI +W+ SQ RDLK +TDV+GNPEEERR
Sbjct: 435 SLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERR 494

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
           + FY+QPWA+EAV R+ ++KVQQ+R ELEQ L  + T
Sbjct: 495 AAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).

Bos taurus (taxid: 9913)

>sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 3   DNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMT-DVVGNPEEERRS 61
           D  I   +  I+  +  R FFL F++ P +FIN  I SQ++DLK +  +   N E ERRS
Sbjct: 445 DEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERRS 504

Query: 62  DFYYQPWAEEAVCRYF 77
           DF+ QPW E+AV RY 
Sbjct: 505 DFFNQPWVEDAVIRYL 520

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
322798220	467	hypothetical protein SINV_00172 [Solenop	0.647	0.197	0.945	1e-45
332023941	499	SWI/SNF-related matrix-associated actin-	0.647	0.184	0.945	1e-45
307206105	499	SWI/SNF-related matrix-associated actin-	0.647	0.184	0.945	1e-45
307183318	499	SWI/SNF-related matrix-associated actin-	0.647	0.184	0.945	2e-45
156550207	499	PREDICTED: SWI/SNF-related matrix-associ	0.647	0.184	0.945	2e-45
242021871	494	brg-1 associated factor, putative [Pedic	0.647	0.186	0.934	4e-45
350418264	499	PREDICTED: SWI/SNF-related matrix-associ	0.647	0.184	0.934	6e-45
340726624	499	PREDICTED: SWI/SNF-related matrix-associ	0.647	0.184	0.934	6e-45
383861944	499	PREDICTED: SWI/SNF-related matrix-associ	0.647	0.184	0.934	6e-45
380020614	499	PREDICTED: SWI/SNF-related matrix-associ	0.647	0.184	0.923	2e-44

>gi|322798220|gb|EFZ20012.1| hypothetical protein SINV_00172 [Solenopsis invicta]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/92 (94%), Positives = 91/92 (98%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           SLDNKIHETVETIN LKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR
Sbjct: 371 SLDNKIHETVETINQLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 430

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
           ++FYYQPWA+EAVCRYFY+KVQQKRAELEQAL
Sbjct: 431 AEFYYQPWAQEAVCRYFYTKVQQKRAELEQAL 462

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023941|gb|EGI64159.1| SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 [Acromyrmex echinatior]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/92 (94%), Positives = 91/92 (98%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           SLDNKIHETVETIN LKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR
Sbjct: 403 SLDNKIHETVETINQLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 462

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
           ++FYYQPWA+EAVCRYFY+KVQQKRAELEQAL
Sbjct: 463 AEFYYQPWAQEAVCRYFYTKVQQKRAELEQAL 494

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206105|gb|EFN84185.1| SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 [Harpegnathos saltator]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/92 (94%), Positives = 91/92 (98%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           SLDNKIHETVETIN LKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR
Sbjct: 403 SLDNKIHETVETINQLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 462

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
           ++FYYQPWA+EAVCRYFY+KVQQKRAELEQAL
Sbjct: 463 AEFYYQPWAQEAVCRYFYTKVQQKRAELEQAL 494

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183318|gb|EFN70187.1| SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 [Camponotus floridanus]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/92 (94%), Positives = 91/92 (98%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           SLDNKIHETVETIN LKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR
Sbjct: 403 SLDNKIHETVETINQLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 462

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
           ++FYYQPWA+EAVCRYFY+KVQQKRAELEQAL
Sbjct: 463 AEFYYQPWAQEAVCRYFYTKVQQKRAELEQAL 494

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550207|ref|XP_001601313.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1-like [Nasonia vitripennis]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/92 (94%), Positives = 91/92 (98%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           SLDNKIHETVETIN LKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR
Sbjct: 403 SLDNKIHETVETINQLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 462

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
           ++FYYQPWA+EAVCRYFY+KVQQKRAELEQAL
Sbjct: 463 AEFYYQPWAQEAVCRYFYTKVQQKRAELEQAL 494

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021871|ref|XP_002431366.1| brg-1 associated factor, putative [Pediculus humanus corporis] gi|212516642|gb|EEB18628.1| brg-1 associated factor, putative [Pediculus humanus corporis]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/92 (93%), Positives = 91/92 (98%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           SLDNKIHETV+TIN LKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR
Sbjct: 393 SLDNKIHETVDTINQLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 452

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
           S++YYQPWA+EAVCRYFY+KVQQKRAELEQAL
Sbjct: 453 SEYYYQPWAQEAVCRYFYTKVQQKRAELEQAL 484

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418264|ref|XP_003491804.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1-like [Bombus impatiens]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 86/92 (93%), Positives = 90/92 (97%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           SLDNKIHETVETIN LKTNREFFLSFAKDPQQFINKWIISQTRDLKTM DVVGNPEEERR
Sbjct: 403 SLDNKIHETVETINQLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMIDVVGNPEEERR 462

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
           ++FYYQPWA+EAVCRYFY+KVQQKRAELEQAL
Sbjct: 463 AEFYYQPWAQEAVCRYFYTKVQQKRAELEQAL 494

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726624|ref|XP_003401655.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1-like [Bombus terrestris]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 86/92 (93%), Positives = 90/92 (97%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           SLDNKIHETVETIN LKTNREFFLSFAKDPQQFINKWIISQTRDLKTM DVVGNPEEERR
Sbjct: 403 SLDNKIHETVETINQLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMIDVVGNPEEERR 462

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
           ++FYYQPWA+EAVCRYFY+KVQQKRAELEQAL
Sbjct: 463 AEFYYQPWAQEAVCRYFYTKVQQKRAELEQAL 494

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861944|ref|XP_003706444.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1-like [Megachile rotundata]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 86/92 (93%), Positives = 90/92 (97%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           SLDNKIHETVETIN LKTNREFFLSFAKDPQQFINKWIISQTRDLKTM DVVGNPEEERR
Sbjct: 403 SLDNKIHETVETINQLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMIDVVGNPEEERR 462

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
           ++FYYQPWA+EAVCRYFY+KVQQKRAELEQAL
Sbjct: 463 AEFYYQPWAQEAVCRYFYTKVQQKRAELEQAL 494

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020614|ref|XP_003694177.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1-like [Apis florea]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/92 (92%), Positives = 89/92 (96%)

Query: 1   SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
           SLDNKIHETVETIN LKTNREFFLSF KDPQQFINKWIISQTRDLKTM DVVGNPEEERR
Sbjct: 403 SLDNKIHETVETINQLKTNREFFLSFVKDPQQFINKWIISQTRDLKTMIDVVGNPEEERR 462

Query: 61  SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
           ++FYYQPWA+EAVCRYFY+KVQQKRAELEQAL
Sbjct: 463 AEFYYQPWAQEAVCRYFYTKVQQKRAELEQAL 494

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
UNIPROTKB|H9KZE0	516	SMARCD1 "Uncharacterized prote	0.647	0.178	0.815	2.6e-38
UNIPROTKB|Q96GM5	515	SMARCD1 "SWI/SNF-related matri	0.647	0.178	0.815	2.6e-38
UNIPROTKB|F1SHA1	513	SMARCD1 "Uncharacterized prote	0.647	0.179	0.815	2.6e-38
MGI|MGI:1933623	515	Smarcd1 "SWI/SNF related, matr	0.647	0.178	0.815	2.6e-38
RGD|1305406	515	Smarcd1 "SWI/SNF related, matr	0.647	0.178	0.815	2.6e-38
UNIPROTKB|F1MTG9	515	SMARCD1 "SWI/SNF-related matri	0.647	0.178	0.793	6.3e-37
UNIPROTKB|Q2TBN1	515	SMARCD1 "SWI/SNF-related matri	0.647	0.178	0.793	6.3e-37
FB|FBgn0025463	515	Bap60 "Brahma associated prote	0.640	0.176	0.791	1e-36
ZFIN|ZDB-GENE-080509-2	476	smarcd3b "SWI/SNF related, mat	0.683	0.203	0.659	8.5e-33
UNIPROTKB|F1NJN5	462	SMARCD3 "Uncharacterized prote	0.647	0.199	0.663	4.2e-31

UNIPROTKB|H9KZE0 SMARCD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 75/92 (81%), Positives = 84/92 (91%)

Query:     1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
             +LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLKTMTDVVGNPEEERR
Sbjct:   420 ALDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERR 479

Query:    61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
             ++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct:   480 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 511

GO:0006337 "nucleosome disassembly" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0048096 "chromatin-mediated maintenance of transcription" evidence=IEA

GO:0071564 "npBAF complex" evidence=IEA

GO:0071565 "nBAF complex" evidence=IEA

UNIPROTKB|Q96GM5 SMARCD1 "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1" [Homo sapiens (taxid:9606)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 75/92 (81%), Positives = 84/92 (91%)

Query:     1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
             +LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLKTMTDVVGNPEEERR
Sbjct:   419 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERR 478

Query:    61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
             ++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct:   479 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 510

GO:0007399 "nervous system development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0032947 "protein complex scaffold" evidence=IDA

GO:0048096 "chromatin-mediated maintenance of transcription" evidence=IMP

GO:0006338 "chromatin remodeling" evidence=IDA;IMP

GO:0016514 "SWI/SNF complex" evidence=IDA

GO:0071564 "npBAF complex" evidence=ISS

GO:0071565 "nBAF complex" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=NAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0006337 "nucleosome disassembly" evidence=IDA

UNIPROTKB|F1SHA1 SMARCD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 75/92 (81%), Positives = 84/92 (91%)

Query:     1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
             +LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLKTMTDVVGNPEEERR
Sbjct:   417 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERR 476

Query:    61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
             ++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct:   477 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 508

GO:0071565 "nBAF complex" evidence=IEA

GO:0071564 "npBAF complex" evidence=IEA

GO:0048096 "chromatin-mediated maintenance of transcription" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=IEA

GO:0006337 "nucleosome disassembly" evidence=IEA

MGI|MGI:1933623 Smarcd1 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1" [Mus musculus (taxid:10090)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 75/92 (81%), Positives = 84/92 (91%)

Query:     1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
             +LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLKTMTDVVGNPEEERR
Sbjct:   419 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERR 478

Query:    61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
             ++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct:   479 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 510

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0006337 "nucleosome disassembly" evidence=ISO

GO:0006338 "chromatin remodeling" evidence=ISO

GO:0007399 "nervous system development" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=ISO

GO:0048096 "chromatin-mediated maintenance of transcription" evidence=ISO

GO:0071564 "npBAF complex" evidence=IDA

GO:0071565 "nBAF complex" evidence=IDA

RGD|1305406 Smarcd1 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 75/92 (81%), Positives = 84/92 (91%)

Query:     1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
             +LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLKTMTDVVGNPEEERR
Sbjct:   419 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERR 478

Query:    61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
             ++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct:   479 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 510

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006337 "nucleosome disassembly" evidence=IEA;ISO

GO:0006338 "chromatin remodeling" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0016514 "SWI/SNF complex" evidence=IEA;ISO

GO:0032947 "protein complex scaffold" evidence=IEA;ISO

GO:0048096 "chromatin-mediated maintenance of transcription" evidence=IEA;ISO

GO:0071564 "npBAF complex" evidence=IEA;ISO

GO:0071565 "nBAF complex" evidence=IEA;ISO

UNIPROTKB|F1MTG9 SMARCD1 "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1" [Bos taurus (taxid:9913)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 73/92 (79%), Positives = 82/92 (89%)

Query:     1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
             +LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLK MTDVVGN EEERR
Sbjct:   419 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMTDVVGNSEEERR 478

Query:    61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
             ++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct:   479 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 510

GO:0071565 "nBAF complex" evidence=IEA

GO:0071564 "npBAF complex" evidence=IEA

GO:0048096 "chromatin-mediated maintenance of transcription" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=IEA

GO:0006337 "nucleosome disassembly" evidence=IEA

UNIPROTKB|Q2TBN1 SMARCD1 "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1" [Bos taurus (taxid:9913)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 73/92 (79%), Positives = 82/92 (89%)

Query:     1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
             +LDNKIHET+ETIN LKT REF LSFA+DPQ FIN W+ SQ RDLK MTDVVGN EEERR
Sbjct:   419 TLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMTDVVGNSEEERR 478

Query:    61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
             ++FY+QPWA+EAVCRYFYSKVQQ+R ELEQAL
Sbjct:   479 AEFYFQPWAQEAVCRYFYSKVQQRRQELEQAL 510

GO:0071565 "nBAF complex" evidence=ISS

GO:0071564 "npBAF complex" evidence=ISS

GO:0016568 "chromatin modification" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

FB|FBgn0025463 Bap60 "Brahma associated protein 60kD" [Drosophila melanogaster (taxid:7227)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 72/91 (79%), Positives = 81/91 (89%)

Query:     2 LDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERRS 61
             LD KIHETV+TIN + TNREFFLSFAKDPQ FI++WIIS+TRDLK MTDV GNPEEERR+
Sbjct:   420 LDTKIHETVDTINQMNTNREFFLSFAKDPQMFIHRWIISETRDLKLMTDVAGNPEEERRA 479

Query:    62 DFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
             +FYYQPW  EAV RYF++KV QKRAELEQAL
Sbjct:   480 EFYYQPWTHEAVSRYFFTKVNQKRAELEQAL 510

GO:0003713 "transcription coactivator activity" evidence=IC

GO:0005515 "protein binding" evidence=IPI

GO:0035060 "brahma complex" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0010628 "positive regulation of gene expression" evidence=IGI

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IPI

GO:0031453 "positive regulation of heterochromatin assembly" evidence=IMP

GO:0008134 "transcription factor binding" evidence=ISS

GO:0003677 "DNA binding" evidence=IDA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

ZFIN|ZDB-GENE-080509-2 smarcd3b "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b" [Danio rerio (taxid:7955)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 64/97 (65%), Positives = 81/97 (83%)

Query:     1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
             SLDNKIHET+E+IN LK  R+F LSF++DP+ +I  W+ SQ+RDLK MTDV GNPEEERR
Sbjct:   380 SLDNKIHETIESINQLKIQRDFMLSFSRDPKGYIQDWLKSQSRDLKLMTDVAGNPEEERR 439

Query:    61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQALVYQFT 97
             ++FY+QPW++EAV RYFY K+QQ+R ELEQAL  + T
Sbjct:   440 AEFYHQPWSQEAVSRYFYCKIQQRRQELEQALALRNT 476

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0003007 "heart morphogenesis" evidence=IGI

GO:0055007 "cardiac muscle cell differentiation" evidence=IGI

UNIPROTKB|F1NJN5 SMARCD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 61/92 (66%), Positives = 79/92 (85%)

Query:     1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTDVVGNPEEERR 60
             +LDNKIHET+E+IN LK  R+F LSF+KDP+ +I   + SQ+RDLK MTDVVGNPEEERR
Sbjct:   366 ALDNKIHETIESINQLKIQRDFMLSFSKDPKGYIQDLLRSQSRDLKVMTDVVGNPEEERR 425

Query:    61 SDFYYQPWAEEAVCRYFYSKVQQKRAELEQAL 92
             ++FY++PW++EAV RYFY K+QQ+R ELEQ+L
Sbjct:   426 AEFYHEPWSQEAVSRYFYCKIQQRRQELEQSL 457

GO:0006337 "nucleosome disassembly" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

GO:0035257 "nuclear hormone receptor binding" evidence=IEA

GO:0042692 "muscle cell differentiation" evidence=IEA

GO:0043393 "regulation of protein binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0071564 "npBAF complex" evidence=IEA

GO:0071565 "nBAF complex" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IEA

GO:0003139 "secondary heart field specification" evidence=IEA

GO:0003219 "cardiac right ventricle formation" evidence=IEA

GO:0003407 "neural retina development" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96GM5	SMRD1_HUMAN	No assigned EC number	0.7835	0.6830	0.1883	yes	N/A
Q61466	SMRD1_MOUSE	No assigned EC number	0.7835	0.6830	0.1883	yes	N/A
Q2TBN1	SMRD1_BOVIN	No assigned EC number	0.7628	0.6830	0.1883	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
KOG2570|consensus	420		99.95
KOG2570|consensus	420		99.53

>KOG2570|consensus

Probab=99.95  E-value=1.4e-28  Score=211.54  Aligned_cols=86  Identities=59%  Similarity=1.034  Sum_probs=82.9

Q ss_pred             ChhHHHHHHHHHHHhhhHHHHHHHHHhhCHHHHHHHHHHHHHhhHHHhhh-cCCCchhhhhccccCChhHHHHHHHHHHH
Q psy9692           1 SLDNKIHETVETINSLKTNREFFLSFAKDPQQFINKWIISQTRDLKTMTD-VVGNPEEERRSDFYYQPWAEEAVCRYFYS   79 (142)
Q Consensus         1 ~lD~~I~~~i~~i~~~k~rr~F~l~fs~dP~~FI~~wi~SQ~rDLk~~~~-~~~~~eeeRrsefy~~pwv~EAV~ryl~~   79 (142)
                      +||++|+.+|++||+++.||+||++||+||++||++||.||++|||++.| .+||+|++|+++||.+||++|||+|||+.
T Consensus       333 alD~kI~~li~~ine~~~rr~Ff~~Fs~dPvefin~wi~Sq~~Dlkv~~gd~~~N~e~eRraefy~qpw~~eav~ry~~~  412 (420)
T KOG2570|consen  333 ALDRKITELIQQINESKERRDFFLEFSKDPVEFINEWIESQSSDLKVLAGDVSGNPEEERRAEFYKQPWTDEAVSRYMFL  412 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhcchhhHHhhccccCCHHHHHHHHHHcCccHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999995 67899999999999999999999999999


Q ss_pred             HHHHHHH
Q psy9692          80 KVQQKRA   86 (142)
Q Consensus        80 kv~q~r~   86 (142)
                      |++++++
T Consensus       413 ~~~q~r~  419 (420)
T KOG2570|consen  413 KVQQKRQ  419 (420)
T ss_pred             HHhhccC
Confidence            9999865

>KOG2570|consensus

Probab=99.53  E-value=5.7e-15  Score=127.78  Aligned_cols=61  Identities=48%  Similarity=0.897  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCChhhhhhhhccCCCcHHHHHHHHHHHHHHHHHHH
Q psy9692          69 AEEAVCRYFYSKVQQKRAELEQALVYQFTMT-DVVGNPEEERRSDFYYQPWAEEAVCRYFYSKVQQKRAE  137 (142)
Q Consensus        69 v~EAV~ryl~~kv~q~r~ele~~lg~~K~~~-~~~~~~E~eR~sefy~qpwv~eav~ry~~~k~~qk~~~  137 (142)
                      ..+.| .||+..+.++.++|       |+|+ |.+||+|+||||+||+||||+|||+||++.|++|+|+|
T Consensus       359 s~dPv-efin~wi~Sq~~Dl-------kv~~gd~~~N~e~eRraefy~qpw~~eav~ry~~~~~~q~r~~  420 (420)
T KOG2570|consen  359 SKDPV-EFINEWIESQSSDL-------KVLAGDVSGNPEEERRAEFYKQPWTDEAVSRYMFLKVQQKRQE  420 (420)
T ss_pred             hhCHH-HHHHHHHHhcchhh-------HHhhccccCCHHHHHHHHHHcCccHHHHHHHHHHHHHhhccCC
Confidence            36667 78899999999999       4776 89999999999999999999999999999999999975

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00