ECOD: domain e4bbrA3

Domain ID e4bbrA3

A: a+b complex topology
X: central helical domain in RNA-polymerase beta-prime subunit
H: central helical domain in RNA-polymerase beta-prime subunit
T: central helical domain in RNA-polymerase beta-prime subunit
F: RNA_pol_Rpb1_5

UID:	001307440
Type:	Automatic domain
Parent:	e5fj8A6
Range:	A:1060-1102,A:1301-1455
PDB:	4bbr
PDB Description:	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
UniProt:	P04050
Hsap BLAST neighbor:	P24928
Species:	Saccharomyces cerevisiae

Domains in the same chain:

Download Pymol

e4bbrA6	A:3-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4bbrA5	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e4bbrA1	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4bbrA9	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4bbrA7	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4bbrA2	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e4bbrA3	A:1060-1102,A:1301-1455	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4bbrA4	A:1103-1131,A:1243-1300	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4bbrA8	A:1132-1242	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

Structural contacts of domain e4bbrA3 of H-group "central helical domain in RNA-polymerase beta-prime subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4bbrB2	A:X,Y,Z->B:x,y,z	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e4bbrE2	A:X,Y,Z->E:x,y,z	Eukaryotic RPB5 N-terminal domain	Interaction Interface Pymol
e4bbrE1	A:X,Y,Z->E:x,y,z	RPB5-like RNA polymerase subunit	Interaction Interface Pymol
e4bbrF1	A:X,Y,Z->F:x,y,z	RPB6/omega subunit-like	Interaction Interface Pymol
e4bbrG3	A:X,Y,Z->G:x,y,z	Nucleic acid-binding proteins	Interaction Interface Pymol
e4bbrG4	A:X,Y,Z->G:x,y,z	Flavin-binding protein dodecin-like	Interaction Interface Pymol