ECOD: domain e4bbrA6

Domain ID e4bbrA6

A: a+b complex topology
X: N-terminal domain in RNA-polymerase beta-prime subunit
H: N-terminal domain in RNA-polymerase beta-prime subunit
T: N-terminal domain in RNA-polymerase beta-prime subunit
F: RNA_pol_Rpb1_1

UID:	001307443
Type:	Automatic domain
Parent:	e1twfA4
Range:	A:3-336
Ligands:	ZN
PDB:	4bbr
PDB Description:	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
UniProt:	P04050
Hsap BLAST neighbor:	P24928
Species:	Saccharomyces cerevisiae

Domains in the same chain:

Download Pymol

e4bbrA6	A:3-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4bbrA5	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e4bbrA1	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e4bbrA9	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4bbrA7	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4bbrA2	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e4bbrA3	A:1060-1102,A:1301-1455	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4bbrA4	A:1103-1131,A:1243-1300	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4bbrA8	A:1132-1242	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

Structural contacts of domain e4bbrA6 of H-group "N-terminal domain in RNA-polymerase beta-prime subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4bbrB2	A:X,Y,Z->B:x,y,z	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e4bbrB6	A:X,Y,Z->B:x,y,z	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e4bbrB4	A:X,Y,Z->B:x,y,z	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol
e4bbrM2	A:X,Y,Z->M:x,y,z	Rubredoxin-related	Interaction Interface Pymol
e4bbrM1	A:X,Y,Z->M:x,y,z	HTH	Interaction Interface Pymol
e4bbrD1	A:-X,Y,-Z-1/2->D:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e4bbrD1	A:X,Y,Z->D:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol