Psyllid ID: psy10312

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70---
Protein Sequence
MGSRFRFPLEFLGANCCFIFTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDEGESIPLETGR
Secondary Structure (PSIPRED)
cccccccccccccccEEcccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgsrfrfpleflganccfiFTGTELWEANlrnggqpppqvaqktpwghtpatniggtwgeddegesipletgr
Flexible Loop (DISEMBL)
MGSRFRFPLEFLGANCCFIFTGTELWEANLRNGGQPPPQVAQKTPWGHTPatniggtwgeddegesipletgr
Low Complexity Region (SEG)
MGSRFRFPLEFLGANCCFIFTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDEGESIPLETGR
Disordered region (IsUnstruct)
****FRFPLEFLGANCCFIFTGTELWEANL*******************************************
Disordered Region (DISOPRED)
****FRFPLEFLGANCCFIFTGTELWE************************TNIGGTWG**************
Disordered Region (DISEMBL)
MGSRFRFPLEFLGANCCFIFTGTELWEANLRNG************WGHTPATNIGGTWGED************
Disordered Region (DISPRO)
***RFRFPLEFLGANCCFIFTGTELWEANLRNGGQP*************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSRFRFPLEFLGANCCFIFTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDEGESIPLETGR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	73	2.2.26 [Sep-21-2011]
Q8SY33	1384	Protein Gawky OS=Drosophi	yes	N/A	0.630	0.033	0.673	3e-12

>sp|Q8SY33|GAWKY_DROME Protein Gawky OS=Drosophila melanogaster GN=gw PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/46 (67%), Positives = 37/46 (80%)

Query: 19 IFTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDEG 64
          I  GT+LWE+NLRNGGQP  Q   K  WGHTP++N+GGTWGEDD+G
Sbjct: 45 INNGTDLWESNLRNGGQPAAQQVPKPSWGHTPSSNLGGTWGEDDDG 90

Required for gene silencing mediated by micro-RNAs (miRNAs). Silences both polyadenylated and deadenylated mRNAs. Required for miRNA-mediated translational repression and mRNA decay. Not required for miRNA target recognition. Necessary to initiate but not to maintain silencing. Promotes mRNA deadenylation through the recruitment of the CCR4-NOT and PAN complexes and promotes decapping by the DCP1-DCP2 complex. Dissociates from silenced mRNAs after deadenylation. Required for completion of nuclear divisions during early embryonic development.
Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
307198673	2031	Trinucleotide repeat-containing gene 6C	0.616	0.022	0.844	3e-15
307185285	2022	Trinucleotide repeat-containing gene 6A	0.616	0.022	0.844	3e-15
340727004	1992	PREDICTED: hypothetical protein LOC10064	0.630	0.023	0.826	4e-15
332026373	1888	Trinucleotide repeat-containing gene 6A	0.616	0.023	0.844	4e-15
328783711	1801	PREDICTED: hypothetical protein LOC41164	0.630	0.025	0.826	4e-15
350414279	1991	PREDICTED: hypothetical protein LOC10074	0.630	0.023	0.826	4e-15
380028808	1807	PREDICTED: uncharacterized protein LOC10	0.630	0.025	0.826	4e-15
383860126	1832	PREDICTED: protein Gawky-like [Megachile	0.630	0.025	0.804	7e-15
322794818	2013	hypothetical protein SINV_10484 [Solenop	0.616	0.022	0.822	1e-14
242017325	1096	conserved hypothetical protein [Pediculu	0.616	0.041	0.755	2e-12

>gi|307198673|gb|EFN79509.1| Trinucleotide repeat-containing gene 6C protein [Harpegnathos saltator]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/45 (84%), Positives = 40/45 (88%)

Query: 19   IFTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDE 63
            +  GT+LWEANLRNGGQPPPQ   KTPWGHTPATNIGGTWGEDDE
Sbjct: 967  VNNGTDLWEANLRNGGQPPPQQQAKTPWGHTPATNIGGTWGEDDE 1011

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307185285|gb|EFN71385.1| Trinucleotide repeat-containing gene 6A protein [Camponotus floridanus]

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/45 (84%), Positives = 40/45 (88%)

Query: 19   IFTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDE 63
            +  GT+LWEANLRNGGQPPPQ   KTPWGHTPATNIGGTWGEDDE
Sbjct: 959  VNNGTDLWEANLRNGGQPPPQQQTKTPWGHTPATNIGGTWGEDDE 1003

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727004|ref|XP_003401841.1| PREDICTED: hypothetical protein LOC100648841 [Bombus terrestris]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/46 (82%), Positives = 40/46 (86%)

Query: 19  IFTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDEG 64
           +  GT+LWEANLRNGGQPPPQ   KTPWGHTPATNIGGTWGEDDE 
Sbjct: 911 VNNGTDLWEANLRNGGQPPPQQQAKTPWGHTPATNIGGTWGEDDEA 956

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026373|gb|EGI66502.1| Trinucleotide repeat-containing gene 6A protein [Acromyrmex echinatior]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/45 (84%), Positives = 40/45 (88%)

Query: 19  IFTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDE 63
           +  GT+LWEANLRNGGQPPPQ   KTPWGHTPATNIGGTWGEDDE
Sbjct: 824 VNNGTDLWEANLRNGGQPPPQQQTKTPWGHTPATNIGGTWGEDDE 868

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783711|ref|XP_395115.4| PREDICTED: hypothetical protein LOC411646 [Apis mellifera]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/46 (82%), Positives = 40/46 (86%)

Query: 19  IFTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDEG 64
           +  GT+LWEANLRNGGQPPPQ   KTPWGHTPATNIGGTWGEDDE 
Sbjct: 712 VNNGTDLWEANLRNGGQPPPQQQAKTPWGHTPATNIGGTWGEDDEA 757

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414279|ref|XP_003490265.1| PREDICTED: hypothetical protein LOC100744615 [Bombus impatiens]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/46 (82%), Positives = 40/46 (86%)

Query: 19  IFTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDEG 64
           +  GT+LWEANLRNGGQPPPQ   KTPWGHTPATNIGGTWGEDDE 
Sbjct: 911 VNNGTDLWEANLRNGGQPPPQQQAKTPWGHTPATNIGGTWGEDDEA 956

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028808|ref|XP_003698078.1| PREDICTED: uncharacterized protein LOC100863913 [Apis florea]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/46 (82%), Positives = 40/46 (86%)

Query: 19  IFTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDEG 64
           +  GT+LWEANLRNGGQPPPQ   KTPWGHTPATNIGGTWGEDDE 
Sbjct: 697 VNNGTDLWEANLRNGGQPPPQQQAKTPWGHTPATNIGGTWGEDDEA 742

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860126|ref|XP_003705542.1| PREDICTED: protein Gawky-like [Megachile rotundata]

 Score = 84.3 bits (207), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 40/46 (86%)

Query: 19  IFTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDEG 64
           +  GT+LWEANLRNGGQPPPQ   KTPWGHTPATNIGGTWGEDD+ 
Sbjct: 722 VNNGTDLWEANLRNGGQPPPQQQAKTPWGHTPATNIGGTWGEDDDA 767

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794818|gb|EFZ17765.1| hypothetical protein SINV_10484 [Solenopsis invicta]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 39/45 (86%)

Query: 19  IFTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDE 63
           +  GT+LWEANLRNGGQPPPQ   K PWGHTPATNIGGTWGEDDE
Sbjct: 929 VNNGTDLWEANLRNGGQPPPQQQTKAPWGHTPATNIGGTWGEDDE 973

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017325|ref|XP_002429140.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212514013|gb|EEB16402.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/45 (75%), Positives = 38/45 (84%)

Query: 19  IFTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDE 63
           I  GT+LWEANLRNGGQPP Q   KTPW HTP+TN+GGTWGE+DE
Sbjct: 297 INNGTDLWEANLRNGGQPPAQPQNKTPWNHTPSTNLGGTWGEEDE 341

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
FB|FBgn0051992	1384	gw "gawky" [Drosophila melanog	0.739	0.039	0.618	1.1e-13

FB|FBgn0051992 gw "gawky" [Drosophila melanogaster (taxid:7227)]

 Score = 192 (72.6 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 34/55 (61%), Positives = 42/55 (76%)

Query:    19 IFTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDEG-ESIPLETG 72
             I  GT+LWE+NLRNGGQP  Q   K  WGHTP++N+GGTWGEDD+G +S  + TG
Sbjct:    45 INNGTDLWESNLRNGGQPAAQQVPKPSWGHTPSSNLGGTWGEDDDGADSSSVWTG 99


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.140   0.478    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       73        73   0.00091  102 3  12 22  0.43    29
                                                     29  0.45    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  487 (52 KB)
  Total size of DFA:  87 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.38u 0.15s 7.53t   Elapsed:  00:00:00
  Total cpu time:  7.38u 0.15s 7.53t   Elapsed:  00:00:00
  Start:  Thu Aug 15 15:45:21 2013   End:  Thu Aug 15 15:45:21 2013

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0035195 "gene silencing by miRNA" evidence=IMP

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IMP

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=IDA

GO:0006402 "mRNA catabolic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0032880 "regulation of protein localization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8SY33	GAWKY_DROME	No assigned EC number	0.6739	0.6301	0.0332	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00