Psyllid ID: psy13096


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
ENTRTPGGAAGTSVKPTKYHYYPHNQHIYLLPECAVQQENTRTPGGAAGTSVKPTKYHYYPHNQHIYLLPECAVQQVCNAVYVRLNYTQPLCACPSRYREPCSASINSDDFHTTELTTDPQGKVLTLVKTCEPVLDMRLCRSPRDWSLLALQNIRTGKSHYLVICRCPDSSILEGPMSHDQPTYASVPGIRVYGMMCVNRAASVVSTTASVYHTSSTTYRTPTPSKRKSRPLRLSRSVRVSRRK
ccccccccccccccccccEEEcccccEEEEccccHHcccccccccccccccccccEEEEcccccEEEEcccccHHHcccEEEEEEcccccccccccccccccccccccccccEEEEEccccccEEEEEEcccccccccccccccccHHEEEEEcccccEEEEEEEEccccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccEEEcccccEEEEccHHHEEEccccccccccccccccccEEEcccccEEEEccHcHHHHHHccEEEEcccccccccccccccccccccccccccccEEEcccccccEEEEEEccccHHHHHHcccHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccEcccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEcc
entrtpggaagtsvkptkyhyyphnqhiyllpecavqqentrtpggaagtsvkptkyhyyphnqhiyllpecAVQQVCNAVYVRLnytqplcacpsryrepcsasinsddfhttelttdpqgkVLTLVKTCepvldmrlcrsprdWSLLALQNirtgkshylvicrcpdssilegpmshdqptyasvpgirvYGMMCVNRAASVVSTTASvyhtssttyrtptpskrksrplrlsrsvrvsrrk
entrtpggaagtsvkptkYHYYPHNQHIYLLPECAVQQENTRTPGGAAGTSVKPTKYHYYPHNQHIYLLPECAVQQVCNAVYVRLNYTQPLCACPSRYREPCSASINSDDFHttelttdpqgkvlTLVKTCEPVLDMRLCRSPRDWSLLALQnirtgkshyLVICRCPDSSILEGPMSHDQPTYASVPGIRVYGMMCVNRAASVVSTtasvyhtssttyrtptpskrksrplrlsrsvrvsrrk
ENTRTPGGAAGTSVKPTKYHYYPHNQHIYLLPECAVQQENTRTPGGAAGTSVKPTKYHYYPHNQHIYLLPECAVQQVCNAVYVRLNYTQPLCACPSRYREPCSASINSDDFHTTELTTDPQGKVLTLVKTCEPVLDMRLCRSPRDWSLLALQNIRTGKSHYLVICRCPDSSILEGPMSHDQPTYASVPGIRVYGMMCVNRAASVVSTTASVYHtssttyrtptpskrksrplrlsrsvrvsrrK
****************TKYHYYPHNQHIYLLPECAVQQ************SVKPTKYHYYPHNQHIYLLPECAVQQVCNAVYVRLNYTQPLCACPSRYREPCSASINSDDFHTTELTTDPQGKVLTLVKTCEPVLDMRLCRSPRDWSLLALQNIRTGKSHYLVICRCPDSSILEG*****QPTYASVPGIRVYGMMCVNRAASVVSTTASVYH*******************************
********************YYPHNQHIYLLPECA*******************TKYHYYPHNQHIYLLPECAVQQVCNAVYVRLNYTQPLCACPSRYRE*****INSDDFHTTELTTDPQGKVLTLVKTCEPVLDMRLCRSPRDWSLLALQNIRTGKSHYLVICRCPDSSILEGPMSHDQPTYASVPGIRVYGMMCVNRA*******************************************
***********TSVKPTKYHYYPHNQHIYLLPECAVQQENTRTPGGAAGTSVKPTKYHYYPHNQHIYLLPECAVQQVCNAVYVRLNYTQPLCACPSRYREPCSASINSDDFHTTELTTDPQGKVLTLVKTCEPVLDMRLCRSPRDWSLLALQNIRTGKSHYLVICRCPDSSILEGPMSHDQPTYASVPGIRVYGMMCVNRAASVVSTTASV*********************************
************SVKPTKYHYYPHNQHIYLLPECAVQQENTRTPGGAAGTSVKPTKYHYYPHNQHIYLLPECAVQQVCNAVYVRLNYTQPLCACPSRYREPCSASINSDDFHTTELTTDPQGKVLTLVKTCEPVLDMRLCRSPRDWSLLALQNIRTGKSHYLVICRCPDSSILEGPMSHDQPTYASVPGIRVYGMMCVNRAA**************TTYRT**********LRLSRSVRVSRR*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ENTRTPGGAAGTSVKPTKYHYYPHNQHIYLLPECAVQQENTRTPGGAAGTSVKPTKYHYYPHNQHIYLLPECAVQQVCNAVYVRLNYTQPLCACPSRYREPCSASINSDDFHTTELTTDPQGKVLTLVKTCEPVLDMRLCRSPRDWSLLALQNIRTGKSHYLVICRCPDSSILEGPMSHDQPTYASVPGIRVYGMMCVNRAASVVSTTASVYHTSSTTYRTPTPSKRKSRPLRLSRSVRVSRRK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
328704000280 PREDICTED: hypothetical protein LOC10057 0.840 0.732 0.691 6e-81
328791620 470 PREDICTED: hypothetical protein LOC10057 0.729 0.378 0.699 1e-79
350417782 466 PREDICTED: hypothetical protein LOC10074 0.672 0.351 0.810 3e-79
380017133294 PREDICTED: uncharacterized protein LOC10 0.721 0.598 0.706 4e-79
270014982 355 hypothetical protein TcasGA2_TC013608 [T 0.696 0.478 0.729 3e-78
322790257208 hypothetical protein SINV_09848 [Solenop 0.75 0.879 0.687 2e-77
307203057174 hypothetical protein EAI_09026 [Harpegna 0.659 0.925 0.731 6e-74
357627396262 hypothetical protein KGM_11658 [Danaus p 0.704 0.656 0.739 1e-72
195495122 849 GE22223 [Drosophila yakuba] gi|194181234 0.676 0.194 0.725 4e-72
194872660 849 GG15880 [Drosophila erecta] gi|190654840 0.676 0.194 0.725 4e-72
>gi|328704000|ref|XP_003242373.1| PREDICTED: hypothetical protein LOC100573121 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 150/217 (69%), Positives = 173/217 (79%), Gaps = 12/217 (5%)

Query: 32  PECAVQQENTRTPGGAAGTSVKPTKYHYYPHNQHIYLLPECAVQQVCNAVYVRLNYTQPL 91
           PE    +E  ++   A    +KPTKYHYYPHNQHIYLLPECAVQQVCNAVYVRLNYTQPL
Sbjct: 39  PESTEDEETNKS--AAPNQGLKPTKYHYYPHNQHIYLLPECAVQQVCNAVYVRLNYTQPL 96

Query: 92  CACPSRYREPCSASINSDDFHTTELTTDPQGKVLTLVKTCEPVLDMRLCRSPRDWSLLAL 151
           CACPSRY+EPCSAS+N+DD HTTEL+TDP GK+LTLVKTCEPV +MR CRSPRDWSLLAL
Sbjct: 97  CACPSRYKEPCSASLNADDLHTTELSTDPNGKILTLVKTCEPVAEMRTCRSPRDWSLLAL 156

Query: 152 QNIRTGKSHYLVICRCPDSSILEGPMSHDQPTYASVPGIRVYGMMCVNR---AASVVSTT 208
           QN+RTGKSHYLVICRCP +++LEGPMSHDQPTYASVPGIRVYGMMCV +    +   +T 
Sbjct: 157 QNVRTGKSHYLVICRCPHTNLLEGPMSHDQPTYASVPGIRVYGMMCVTKNGGGSGHQTTL 216

Query: 209 ASVYHTSSTTYRTPTP-SKRKSRPLRLSRSVRVSRRK 244
           A   H+S      P P +KR++RPLR  RS+    R+
Sbjct: 217 APPLHSS------PAPITKRRARPLRTPRSLDAYYRR 247




Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791620|ref|XP_003251600.1| PREDICTED: hypothetical protein LOC100577168 [Apis mellifera] Back     alignment and taxonomy information
>gi|350417782|ref|XP_003491592.1| PREDICTED: hypothetical protein LOC100745101 [Bombus impatiens] Back     alignment and taxonomy information
>gi|380017133|ref|XP_003692517.1| PREDICTED: uncharacterized protein LOC100870902 [Apis florea] Back     alignment and taxonomy information
>gi|270014982|gb|EFA11430.1| hypothetical protein TcasGA2_TC013608 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|322790257|gb|EFZ15256.1| hypothetical protein SINV_09848 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307203057|gb|EFN82248.1| hypothetical protein EAI_09026 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|357627396|gb|EHJ77102.1| hypothetical protein KGM_11658 [Danaus plexippus] Back     alignment and taxonomy information
>gi|195495122|ref|XP_002095133.1| GE22223 [Drosophila yakuba] gi|194181234|gb|EDW94845.1| GE22223 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|194872660|ref|XP_001973057.1| GG15880 [Drosophila erecta] gi|190654840|gb|EDV52083.1| GG15880 [Drosophila erecta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
FB|FBgn0261799 852 dsx-c73A "doublesex cognate 73 0.631 0.180 0.785 1.2e-67
FB|FBgn0261799 dsx-c73A "doublesex cognate 73A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 121/154 (78%), Positives = 133/154 (86%)

Query:    51 SVKPTKYHYYPHNQHIYLLPECAVQQVCNAVYVRLNYTQPLCACPSRYREPCSASINSDD 110
             + KPTKYHYYPHNQHIYLLPECA+QQVCNAVYVRLNYTQPLCACPSRYR+PCSAS+N DD
Sbjct:   493 TAKPTKYHYYPHNQHIYLLPECAIQQVCNAVYVRLNYTQPLCACPSRYRDPCSASLNEDD 552

Query:   111 FHTTELTTDPQGKVLTLVKTCEPVLDMRLCRSPRDWSLLALQNIRTGKSHYLVICRCPDS 170
              HTT+L  D + K +TL KTCE   +MR CRSP+DWSLLALQN RTGKSHYLVICRCPD 
Sbjct:   553 QHTTKLVGDTKKKAITLAKTCEATTEMRECRSPKDWSLLALQNTRTGKSHYLVICRCPDH 612

Query:   171 SILEGPMSHDQPTYASVPGIRVYGMMCVNRAASV 204
               +EGPM+HDQPTYASVPGIRV+GMMCV    SV
Sbjct:   613 FKMEGPMAHDQPTYASVPGIRVFGMMCVKPGYSV 646


GO:0005214 "structural constituent of chitin-based cuticle" evidence=IC
GO:0040003 "chitin-based cuticle development" evidence=IEP
GO:0005576 "extracellular region" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 244
PF11581129 Argos: Antagonist of EGFR signalling, Argos; Inter 99.95
PF11581129 Argos: Antagonist of EGFR signalling, Argos; Inter 93.81
>PF11581 Argos: Antagonist of EGFR signalling, Argos; InterPro: IPR021633 Argos is a natural secreted antagonist of EGFR signalling which functions by binding growth factor ligands that activate EGFR by forming a clamp like structure using three disulphide-bonded beta-sheet domains [] Back     alignment and domain information
Probab=99.95  E-value=1.6e-28  Score=200.58  Aligned_cols=76  Identities=33%  Similarity=0.597  Sum_probs=62.6

Q ss_pred             ceeEeecCCCCceeeEEecccccccCcccCCCCc--ceeeecccccCCceEEEEEeecCCCCccccCCCCCCCCcCCCCC
Q psy13096        112 HTTELTTDPQGKVLTLVKTCEPVLDMRLCRSPRD--WSLLALQNIRTGKSHYLVICRCPDSSILEGPMSHDQPTYASVPG  189 (244)
Q Consensus       112 HTi~d~~d~~~kkttl~KtCEPV~~lp~CR~fRD--WsLlalqn~rtgkS~ylViCRCP~~svl~gpmshdqP~yas~pG  189 (244)
                      |||+|       |||+||+|||||+||+||+|||  |+|++.  +.+|+|+|+||||||++||++  |.++||.-+|++|
T Consensus         1 hti~d-------ktr~yk~cepvkrlp~cr~frd~twtl~~~--~~~n~t~Q~V~C~Cp~~Sv~Y--l~kr~p~~~g~~g   69 (129)
T PF11581_consen    1 HTIAD-------KTRQYKLCEPVKRLPKCRYFRDYTWTLTSG--PDANATEQIVHCRCPKNSVTY--LTKRQPYNNGNPG   69 (129)
T ss_dssp             SEEEE-------TTEEEEESS-GGGS-B--TTTSEEEEEEEE--TTTTEEEEEE-SB--TTEEEE--EEEEEE--TTS-C
T ss_pred             Cccch-------hcceeecccchhhcchhheeccceEEEecC--CCCCceeEEEEeecCCCccce--eeeccccCCCCcc
Confidence            99999       9999999999999999999999  999997  448999999999999999998  9999999999999


Q ss_pred             ceEEEEEeec
Q psy13096        190 IRVYGMMCVN  199 (244)
Q Consensus       190 irVYgm~C~~  199 (244)
                       ++|.|||||
T Consensus        70 -~~Y~FaCSP   78 (129)
T PF11581_consen   70 -FQYAFACSP   78 (129)
T ss_dssp             -EEEEEEEEE
T ss_pred             -eEEEEecCh
Confidence             559999999



; PDB: 3CGU_A 3C9A_A.

>PF11581 Argos: Antagonist of EGFR signalling, Argos; InterPro: IPR021633 Argos is a natural secreted antagonist of EGFR signalling which functions by binding growth factor ligands that activate EGFR by forming a clamp like structure using three disulphide-bonded beta-sheet domains [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
3c9a_A223 Protein giant-lens; argos, EGF, EGFR inhibitor, in 1e-35
>3c9a_A Protein giant-lens; argos, EGF, EGFR inhibitor, inhibitor, developmental protein, glycoprotein, secreted, sensory transduction, vision; 1.60A {Drosophila melanogaster} PDB: 3cgu_A Length = 223 Back     alignment and structure
 Score =  125 bits (315), Expect = 1e-35
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 21/134 (15%)

Query: 69  LPECAVQQVCNAV-YVRLNYTQPLCACPSRYREPCSASINSDDFHTTELTTDPQGKVLTL 127
           LP CA   VC+ +      + +  C CP      C +S+  +D HT    T         
Sbjct: 26  LPVCAPNAVCSKIDLYETPWIERQCRCPDG--RTCPSSLGVEDGHTIADKT-------RH 76

Query: 128 VKTCEPVLDMRLCRSPRDWSLLALQNIRTGKSHYLVICRCPDSSIL----EGPMSHDQPT 183
            K C+PV  + +C+  RD++           +  +V CRCP +S+       P+ +D P 
Sbjct: 77  YKMCQPVHKLPVCKHFRDYTWTLTTAAELNVTEQIVHCRCPRNSVTYLTKREPIGNDSPG 136

Query: 184 YASVPGIRVYGMMC 197
           Y        Y   C
Sbjct: 137 Y-------RYLFAC 143


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
3c9a_A223 Protein giant-lens; argos, EGF, EGFR inhibitor, in 100.0
>3c9a_A Protein giant-lens; argos, EGF, EGFR inhibitor, inhibitor, developmental protein, glycoprotein, secreted, sensory transduction, vision; 1.60A {Drosophila melanogaster} PDB: 3cgu_A Back     alignment and structure
Probab=100.00  E-value=3.3e-44  Score=311.30  Aligned_cols=128  Identities=27%  Similarity=0.567  Sum_probs=120.2

Q ss_pred             eeccCCCceeeCCcchhhhhhceeeeec-CCCCCcccCCCCCCCCCcCCCCCCCCceeEeecCCCCceeeEEeccccccc
Q psy13096         58 HYYPHNQHIYLLPECAVQQVCNAVYVRL-NYTQPLCACPSRYREPCSASINSDDFHTTELTTDPQGKVLTLVKTCEPVLD  136 (244)
Q Consensus        58 hYyphnqhiylLPECa~qqVCnkVd~y~-n~tqp~CrCp~~y~~pCsaSL~~DDgHTi~d~~d~~~kkttl~KtCEPV~~  136 (244)
                      .-|+-.++.++|||||++|||||||+|+ ||+|+|||||++  ++||+||..||||||+|       |+|++|+|||||+
T Consensus        15 ~lY~~~~Se~dLP~Ca~~~VCn~V~~y~~P~vEr~CRCP~~--~~CP~sl~~dD~hTi~d-------kr~q~K~CePvk~   85 (223)
T 3c9a_A           15 ILYQVGDSEEDLPVCAPNAVCSKIDLYETPWIERQCRCPDG--RTCPSSLGVEDGHTIAD-------KTRHYKMCQPVHK   85 (223)
T ss_dssp             EEESSSSSGGGSCBCCTTBEEEEEECSSSCEEEECCBCSTT--CCCCCCSSSTTSSEEEE-------TTEEEEESSCSTT
T ss_pred             EEeecCCchhhccccchhhhhhhhhhhccchhhhhccCcCc--CCCCceeccCCCeeecc-------cceeeeecccccc
Confidence            4567778999999999999999999998 999999999997  99999999999999999       9999999999999


Q ss_pred             CcccCCCCc--ceeeecccccCCceEEEEEeecCCCCccccCCCCCCCCcCCCCCceEEEEEeec
Q psy13096        137 MRLCRSPRD--WSLLALQNIRTGKSHYLVICRCPDSSILEGPMSHDQPTYASVPGIRVYGMMCVN  199 (244)
Q Consensus       137 lp~CR~fRD--WsLlalqn~rtgkS~ylViCRCP~~svl~gpmshdqP~yas~pGirVYgm~C~~  199 (244)
                      ||+||+|+|  |||+++ | ..|.++|+||||||++++.+  |..+||.-++++| .+|.|+||+
T Consensus        86 Lp~Cr~f~d~twTL~~~-~-~~Nvt~qiVhCrCp~ns~~~--l~kr~~~~~~~~~-~~~~f~Csp  145 (223)
T 3c9a_A           86 LPVCKHFRDYTWTLTTA-A-ELNVTEQIVHCRCPRNSVTY--LTKREPIGNDSPG-YRYLFACSP  145 (223)
T ss_dssp             SCBCCTTTSCCEEEEEE-T-TTTEEEEEECSBCCTTEEEE--EEEEEECCTTCCS-EEEEEEEEE
T ss_pred             CcccccCCCcceEeeec-c-CCcceEEEEEEeCCCCCeEE--EEEcccccCCCcc-EEEEEEecc
Confidence            999999999  999997 3 35788899999999999987  9999999999999 669999999




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00