Psyllid ID: psy1329

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-----
MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKDMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEEDKTSGIYSSLYKACKFS
ccccccccccEEEcEEEEEEEEEccEEEEEEEEcHHHHHHHHcccccHHHHHHcccccccccccccccHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccEEEEEEEEccccHHHHccccccHHHHHHcccEEEcccccccccHHHHHHHHccccccccccccccccccHHHHHHccccccccccccccHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccEEccccccHHHHHHHHHHHHHHHccccEEEEEEEEEEccccHHHHHHHHHHHHHcccEEEEEEEccEEEEEEEEccccHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccc
ccEEEcccccEEccEEEEEEEEccccEEEEEEccHHHHHHHccccccHHHHHHHHHHEEcccccccccHHHHHHHHccccHHHHHHHHHHcccEEEccccccEEEEEEEEEEEEccccEEEEEEEccHEEHHcccccccHHHHccHHHHHHHHHHcHHHHccccEEEEEEcHHHHHHHHccccccHHHHHHHHHHEHcccccccccHHHHHHHHccccHHHHHHHHHHcccEEccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHcccEEEEEEEEEEEccccccccHHcHcHHHHHHHHccccccccccccccccHHHHHHHEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHccc
mskiftptnqirMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFtnvskgqaanKEDLKKAFNTEDQTEICKLILMKDmskiftptnqirMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFtnvskgqaanKEDLKKAFNTnmlnissltsfrekDIDEVLQTHTVFtnvskgqaanKEDLKKAFNTEDQTEICKLILMKgelqisdkERSSQIENQFKDIATIVSEkcintetkrpfTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVeneewsgggllliclidpgkyreIDELVRTetrgqgtlellnlkevtegeeerSSQIENQFKDIATIVSEkcintetkrpfTVSMIEAGLKQIHFSVNVNKNSKQQALEEDKTSGIYSSLYKACKFS
mskiftptnqirmtnVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFtnvskgqaankedlkkafnteDQTEICKLILMKDMSkiftptnqirmtNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVftnvskgqaankEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTvftnvskgqaankedLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIativsekcintetKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEvsagvkdvkklkEKLVKCATsveneewsggglLLICLIDPGKYREIDELVrtetrgqgtlellnlkevtegeeerssqienqfkdiativsekcintetKRPFTVSMIEAGLKQIHFSVNVNKNskqqaleedktsgiysslykackfs
MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKDMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGvkdvkklkeklvkCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEEDKTSGIYSSLYKACKFS
********NQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK***********AFNTEDQTEICKLILMKDMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK*********KKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNV******************DQTEICKLILMKGELQ***********NQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNL*****************FKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNV****************************
*******TNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKDMS***************IVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNMLN*********KDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQ**************KDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQG*************************KDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEEDKTSGIYSSLYKACKF*
MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKDMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKE***********IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEEDKTSGIYSSLYKACKFS
*SKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKDMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEEDKTSGIYSSLYKACKFS
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MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKDMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEEDKTSGIYSSLYKACKFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query465 2.2.26 [Sep-21-2011]
A5D8M6250 Ribosome maturation prote N/A N/A 0.526 0.98 0.544 3e-80
Q5ZIY4250 Ribosome maturation prote yes N/A 0.526 0.98 0.557 3e-80
Q5RAZ2250 Ribosome maturation prote yes N/A 0.526 0.98 0.547 7e-80
Q9Y3A5250 Ribosome maturation prote yes N/A 0.526 0.98 0.547 7e-80
Q6DIT8250 Ribosome maturation prote yes N/A 0.526 0.98 0.537 2e-79
Q3SWZ6250 Ribosome maturation prote yes N/A 0.526 0.98 0.540 5e-79
Q5RK30250 Ribosome maturation prote yes N/A 0.526 0.98 0.544 1e-78
P70122250 Ribosome maturation prote yes N/A 0.526 0.98 0.544 1e-78
Q23202253 Ribosome maturation prote yes N/A 0.533 0.980 0.461 3e-70
Q86KZ5274 Ribosome maturation prote yes N/A 0.526 0.894 0.438 3e-65
>sp|A5D8M6|SBDS_XENLA Ribosome maturation protein SBDS OS=Xenopus laevis GN=sbds PE=2 SV=1 Back     alignment and function desciption
 Score =  299 bits (766), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 160/294 (54%), Positives = 196/294 (66%), Gaps = 49/294 (16%)

Query: 96  IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
           IFTPTNQIR+TNVA+VRMKK GKRFEIACYKNKV+SWR+  E                  
Sbjct: 3   IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAE------------------ 44

Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
                                       KD+DEVLQTH+VF NVSKGQ A KEDL KAF 
Sbjct: 45  ----------------------------KDLDEVLQTHSVFMNVSKGQGAKKEDLLKAFG 76

Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
           TEDQTEICK IL KGELQ+S+KERS+Q+E  F+DIATIV++KC+N ETKRP+TV++IE  
Sbjct: 77  TEDQTEICKQILSKGELQVSEKERSTQLEQMFRDIATIVADKCVNPETKRPYTVNLIERA 136

Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCA 335
           +K IH+SV   K++KQQAL+VI  LK+ M IERA MR+R  V A      K K K +   
Sbjct: 137 MKDIHYSVKATKSTKQQALDVIKQLKETMQIERAHMRLRFIVPAKDGKKLKEKLKPLIKH 196

Query: 336 TSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEE 389
              EN +     L ++CLIDPG +REIDEL+R ET+G+GTLE+L+LK+V EG+E
Sbjct: 197 IESENFDQE---LEIVCLIDPGCFREIDELIRCETKGKGTLEVLSLKDVEEGDE 247
Required for the assembly of mature ribosomes and ribosome biogenesis. Together with EFTUD1, triggers the GTP-dependent release of eif6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating eif6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. Required for normal levels of protein synthesis. May play a role in cellular stress resistance. May play a role in cellular response to DNA damage. May play a role in cell proliferation.
Xenopus laevis (taxid: 8355)
>sp|Q5ZIY4|SBDS_CHICK Ribosome maturation protein SBDS OS=Gallus gallus GN=SBDS PE=2 SV=1 Back     alignment and function description
>sp|Q5RAZ2|SBDS_PONAB Ribosome maturation protein SBDS OS=Pongo abelii GN=SBDS PE=2 SV=1 Back     alignment and function description
>sp|Q9Y3A5|SBDS_HUMAN Ribosome maturation protein SBDS OS=Homo sapiens GN=SBDS PE=1 SV=4 Back     alignment and function description
>sp|Q6DIT8|SBDS_XENTR Ribosome maturation protein SBDS OS=Xenopus tropicalis GN=sbds PE=2 SV=1 Back     alignment and function description
>sp|Q3SWZ6|SBDS_BOVIN Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1 Back     alignment and function description
>sp|Q5RK30|SBDS_RAT Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2 SV=1 Back     alignment and function description
>sp|P70122|SBDS_MOUSE Ribosome maturation protein SBDS OS=Mus musculus GN=Sbds PE=1 SV=4 Back     alignment and function description
>sp|Q23202|SBDS_CAEEL Ribosome maturation protein SBDS OS=Caenorhabditis elegans GN=sbds-1 PE=3 SV=2 Back     alignment and function description
>sp|Q86KZ5|SBDS_DICDI Ribosome maturation protein SBDS OS=Dictyostelium discoideum GN=sbds PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query465
156553811252 PREDICTED: ribosome maturation protein S 0.535 0.988 0.606 2e-95
383854215252 PREDICTED: ribosome maturation protein S 0.535 0.988 0.595 2e-94
48129273255 PREDICTED: ribosome maturation protein S 0.541 0.988 0.593 4e-94
380023259255 PREDICTED: LOW QUALITY PROTEIN: ribosome 0.541 0.988 0.593 1e-93
350423297252 PREDICTED: ribosome maturation protein S 0.535 0.988 0.599 2e-93
340719099255 PREDICTED: ribosome maturation protein S 0.535 0.976 0.595 1e-92
332025015253 Ribosome maturation protein SBDS [Acromy 0.535 0.984 0.580 8e-91
322787074288 hypothetical protein SINV_15393 [Solenop 0.544 0.878 0.572 2e-90
357615518251 hypothetical protein KGM_05560 [Danaus p 0.535 0.992 0.569 1e-89
193676604252 PREDICTED: ribosome maturation protein S 0.533 0.984 0.557 7e-89
>gi|156553811|ref|XP_001604171.1| PREDICTED: ribosome maturation protein SBDS-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 180/297 (60%), Positives = 211/297 (71%), Gaps = 48/297 (16%)

Query: 93  MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTN 152
           MSKIFTP NQIR+TNVA+VRMKKAGKRFEIACY+NKVISWRN +E               
Sbjct: 1   MSKIFTPVNQIRLTNVAVVRMKKAGKRFEIACYRNKVISWRNKLE--------------- 45

Query: 153 VSKGQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKK 212
                                          KDIDEVLQTHTVF NVSKGQ A KEDL K
Sbjct: 46  -------------------------------KDIDEVLQTHTVFMNVSKGQVAKKEDLIK 74

Query: 213 AFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMI 272
           AF  +DQTEICK IL KGELQ+SDKER S +++ FKDIAT V++KC+N E+KRP++VS+I
Sbjct: 75  AFGKDDQTEICKEILEKGELQVSDKERHSALDSMFKDIATTVADKCVNPESKRPYSVSLI 134

Query: 273 EAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLV 332
           E  +K IHFSV  N+N+KQQALEVI  LK  M +ERAQMR+RV VS   K+ +KL+EK+V
Sbjct: 135 EKAMKDIHFSVKPNRNAKQQALEVITQLKTVMPLERAQMRLRVLVSG--KEARKLREKIV 192

Query: 333 KCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEE 389
           K  T VE+E+W+ G L L+CLIDPG YREIDELVR ET+G G LELLNLKE+TEGEE
Sbjct: 193 KLTTKVESEDWNSGSLDLVCLIDPGHYREIDELVRAETKGSGVLELLNLKEITEGEE 249

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383854215|ref|XP_003702617.1| PREDICTED: ribosome maturation protein SBDS-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|48129273|ref|XP_396646.1| PREDICTED: ribosome maturation protein SBDS-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380023259|ref|XP_003695442.1| PREDICTED: LOW QUALITY PROTEIN: ribosome maturation protein SBDS-like [Apis florea] Back     alignment and taxonomy information
>gi|350423297|ref|XP_003493435.1| PREDICTED: ribosome maturation protein SBDS-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340719099|ref|XP_003397994.1| PREDICTED: ribosome maturation protein SBDS-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|332025015|gb|EGI65202.1| Ribosome maturation protein SBDS [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|322787074|gb|EFZ13298.1| hypothetical protein SINV_15393 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|357615518|gb|EHJ69704.1| hypothetical protein KGM_05560 [Danaus plexippus] Back     alignment and taxonomy information
>gi|193676604|ref|XP_001943727.1| PREDICTED: ribosome maturation protein SBDS-like [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query465
UNIPROTKB|Q5ZIY4250 SBDS "Ribosome maturation prot 0.436 0.812 0.6 9e-61
UNIPROTKB|A5D8M6250 sbds "Ribosome maturation prot 0.458 0.852 0.578 5e-60
UNIPROTKB|E2R2W6252 SBDS "Uncharacterized protein" 0.438 0.809 0.582 1.3e-59
UNIPROTKB|Q9Y3A5250 SBDS "Ribosome maturation prot 0.436 0.812 0.580 4.5e-59
UNIPROTKB|Q5RAZ2250 SBDS "Ribosome maturation prot 0.436 0.812 0.580 4.5e-59
UNIPROTKB|Q6DIT8250 sbds "Ribosome maturation prot 0.458 0.852 0.569 4.5e-59
UNIPROTKB|F1RJJ3250 SBDS "Uncharacterized protein" 0.436 0.812 0.580 7.3e-59
ZFIN|ZDB-GENE-040426-1116257 sbds "Shwachman-Bodian-Diamond 0.460 0.832 0.572 9.3e-59
UNIPROTKB|B5XEK1250 SBDS "Ribosome maturation prot 0.455 0.848 0.562 1.9e-58
UNIPROTKB|Q3SWZ6250 SBDS "Ribosome maturation prot 0.436 0.812 0.571 3.2e-58
UNIPROTKB|Q5ZIY4 SBDS "Ribosome maturation protein SBDS" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 126/210 (60%), Positives = 160/210 (76%)

Query:   183 EKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQ 242
             EKDIDEVLQTHTVF NVSKGQ A KEDL +AF T+DQTEICK+IL KGELQ+SDKER +Q
Sbjct:    44 EKDIDEVLQTHTVFVNVSKGQVAKKEDLVRAFGTDDQTEICKVILSKGELQVSDKERQTQ 103

Query:   243 IENQFKDIATIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQ 302
             +E  F+DIATIV++KC+N ETKRP+TV +IE  +K IH+SV  NK++KQQALEVI  LK+
Sbjct:   104 LEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIRQLKE 163

Query:   303 CMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKYR 360
              M IERA MR+R  + V  G                 +ENE++    L ++CLIDPG +R
Sbjct:   164 TMQIERAHMRLRFILPVKEGKKLKEKLKPLIKV----IENEDFHDQ-LEIVCLIDPGCFR 218

Query:   361 EIDELVRTETRGQGTLELLNLKEVTEGEEE 390
             EIDEL+R+ET+G+GTLE+L+LK+V EG+E+
Sbjct:   219 EIDELIRSETKGKGTLEVLSLKDVEEGDEK 248
GO:0003723 "RNA binding" evidence=IBA
GO:0005634 "nucleus" evidence=IBA
GO:0005737 "cytoplasm" evidence=IBA
GO:0006364 "rRNA processing" evidence=IBA
GO:0042273 "ribosomal large subunit biogenesis" evidence=IBA
GO:0005654 "nucleoplasm" evidence=IEA
GO:0005730 "nucleolus" evidence=IEA
GO:0001833 "inner cell mass cell proliferation" evidence=IEA
GO:0008017 "microtubule binding" evidence=IEA
GO:0019843 "rRNA binding" evidence=IEA
GO:0030282 "bone mineralization" evidence=IEA
GO:0030595 "leukocyte chemotaxis" evidence=IEA
GO:0043148 "mitotic spindle stabilization" evidence=IEA
GO:0048539 "bone marrow development" evidence=IEA
GO:0008283 "cell proliferation" evidence=ISS
GO:0042256 "mature ribosome assembly" evidence=ISS
GO:0043022 "ribosome binding" evidence=ISS
GO:0000922 "spindle pole" evidence=ISS
UNIPROTKB|A5D8M6 sbds "Ribosome maturation protein SBDS" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|E2R2W6 SBDS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y3A5 SBDS "Ribosome maturation protein SBDS" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RAZ2 SBDS "Ribosome maturation protein SBDS" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q6DIT8 sbds "Ribosome maturation protein SBDS" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|F1RJJ3 SBDS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1116 sbds "Shwachman-Bodian-Diamond syndrome" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B5XEK1 SBDS "Ribosome maturation protein SBDS" [Salmo salar (taxid:8030)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SWZ6 SBDS "Ribosome maturation protein SBDS" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3SWZ6SBDS_BOVINNo assigned EC number0.54080.52680.98yesN/A
Q5RK30SBDS_RATNo assigned EC number0.54420.52680.98yesN/A
P70122SBDS_MOUSENo assigned EC number0.54420.52680.98yesN/A
Q9Y3A5SBDS_HUMANNo assigned EC number0.54760.52680.98yesN/A
Q5ZIY4SBDS_CHICKNo assigned EC number0.55780.52680.98yesN/A
Q6DIT8SBDS_XENTRNo assigned EC number0.53740.52680.98yesN/A
Q5RAZ2SBDS_PONABNo assigned EC number0.54760.52680.98yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
PTZ00448373 PTZ00448, PTZ00448, hypothetical protein; Provisio 3e-49
COG1500234 COG1500, COG1500, Predicted exosome subunit [Trans 1e-48
pfam09377126 pfam09377, SBDS_C, SBDS protein C-terminal domain 2e-41
TIGR00291231 TIGR00291, RNA_SBDS, rRNA metabolism protein, SBDS 2e-40
pfam0117291 pfam01172, SBDS, Shwachman-Bodian-Diamond syndrome 2e-32
pfam0117291 pfam01172, SBDS, Shwachman-Bodian-Diamond syndrome 5e-30
PTZ00448373 PTZ00448, PTZ00448, hypothetical protein; Provisio 1e-28
COG1500234 COG1500, COG1500, Predicted exosome subunit [Trans 5e-25
PRK13760231 PRK13760, PRK13760, putative RNA-associated protei 2e-24
TIGR00291231 TIGR00291, RNA_SBDS, rRNA metabolism protein, SBDS 7e-20
pfam09377126 pfam09377, SBDS_C, SBDS protein C-terminal domain 8e-18
PRK13760231 PRK13760, PRK13760, putative RNA-associated protei 9e-13
COG1500234 COG1500, COG1500, Predicted exosome subunit [Trans 3e-08
PTZ00448 373 PTZ00448, PTZ00448, hypothetical protein; Provisio 4e-08
TIGR00291231 TIGR00291, RNA_SBDS, rRNA metabolism protein, SBDS 2e-06
>gnl|CDD|185627 PTZ00448, PTZ00448, hypothetical protein; Provisional Back     alignment and domain information 
 Score =  172 bits (437), Expect = 3e-49
 Identities = 100/272 (36%), Positives = 150/272 (55%), Gaps = 50/272 (18%)

Query: 96  IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
           +F P+NQI++TNVA+VR K  GKRFE+ACYKNK+++WR+ +E D+DEVLQ  T+F NVSK
Sbjct: 3   LFQPSNQIKLTNVAVVRYKSHGKRFEVACYKNKILNWRSGVEWDLDEVLQIRTIFANVSK 62

Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
           GQ AN +DL   F TN  +I +                                      
Sbjct: 63  GQLANSDDLNTVFGTN--SIDN-------------------------------------- 82

Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
                 ICK IL KGE+Q+S+ ERS  ++ QF DI  +++   +N +   P +V +IE+ 
Sbjct: 83  ------ICKTILSKGEIQVSETERSYMLDKQFTDICHMLNRMTVNPKNNLPLSVKIIESE 136

Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCM--SIERAQMRVRVEVSAGVKDVKKLKEKLVK 333
           LK   FSV++NK +K+QAL+    LK+ +   IERA+M ++  +S  + + + + +KL +
Sbjct: 137 LKDSGFSVSLNKTTKEQALKAFDILKKRIPDQIERAKMMLK--LSVDIVNKQNITKKLNE 194

Query: 334 CATSVENEEWSGGGLLLICLIDPGKYREIDEL 365
                 + E       +  L +P  YREID+L
Sbjct: 195 FNVFPISSEEKHNTYSITFLCEPRYYREIDQL 226

Length = 373
>gnl|CDD|224417 COG1500, COG1500, Predicted exosome subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|220213 pfam09377, SBDS_C, SBDS protein C-terminal domain Back     alignment and domain information
>gnl|CDD|129392 TIGR00291, RNA_SBDS, rRNA metabolism protein, SBDS family Back     alignment and domain information
>gnl|CDD|189870 pfam01172, SBDS, Shwachman-Bodian-Diamond syndrome (SBDS) protein Back     alignment and domain information
>gnl|CDD|189870 pfam01172, SBDS, Shwachman-Bodian-Diamond syndrome (SBDS) protein Back     alignment and domain information
>gnl|CDD|185627 PTZ00448, PTZ00448, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|224417 COG1500, COG1500, Predicted exosome subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|237492 PRK13760, PRK13760, putative RNA-associated protein; Provisional Back     alignment and domain information
>gnl|CDD|129392 TIGR00291, RNA_SBDS, rRNA metabolism protein, SBDS family Back     alignment and domain information
>gnl|CDD|220213 pfam09377, SBDS_C, SBDS protein C-terminal domain Back     alignment and domain information
>gnl|CDD|237492 PRK13760, PRK13760, putative RNA-associated protein; Provisional Back     alignment and domain information
>gnl|CDD|224417 COG1500, COG1500, Predicted exosome subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|185627 PTZ00448, PTZ00448, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|129392 TIGR00291, RNA_SBDS, rRNA metabolism protein, SBDS family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 465
KOG2917|consensus250 100.0
TIGR00291231 RNA_SBDS rRNA metabolism protein, SBDS family. Thi 100.0
PRK13760231 putative RNA-associated protein; Provisional 100.0
PTZ00448373 hypothetical protein; Provisional 100.0
COG1500234 Predicted exosome subunit [Translation, ribosomal 100.0
PF09377125 SBDS_C: SBDS protein C-terminal domain; InterPro: 100.0
KOG2917|consensus250 100.0
PTZ00448373 hypothetical protein; Provisional 100.0
TIGR00291231 RNA_SBDS rRNA metabolism protein, SBDS family. Thi 100.0
COG1500234 Predicted exosome subunit [Translation, ribosomal 99.97
PRK13760231 putative RNA-associated protein; Provisional 99.97
PF0117291 SBDS: Shwachman-Bodian-Diamond syndrome (SBDS) pro 99.96
PF0117291 SBDS: Shwachman-Bodian-Diamond syndrome (SBDS) pro 99.93
PF09377125 SBDS_C: SBDS protein C-terminal domain; InterPro: 99.66
cd0409778 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elo 95.65
PF0918656 DUF1949: Domain of unknown function (DUF1949); Int 95.48
PF0067989 EFG_C: Elongation factor G C-terminus; InterPro: I 95.4
cd0371178 Tet_C Tet_C: C-terminus of ribosomal protection pr 95.14
cd0371378 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C- 95.08
cd0371079 BipA_TypA_C BipA_TypA_C: a C-terminal portion of B 95.05
cd0151479 Elongation_Factor_C Elongation factor G C-terminus 95.02
cd0409680 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family r 94.9
cd0409880 eEF2_C_snRNP eEF2_C_snRNP: This family includes a 94.83
smart0083885 EFG_C Elongation factor G C-terminus. This domain 94.55
cd0370980 lepA_C lepA_C: This family represents the C-termin 94.43
TIGR00257204 IMPACT_YIGZ uncharacterized protein, YigZ family. 91.0
PRK11568204 hypothetical protein; Provisional 90.49
>KOG2917|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.1e-86  Score=630.71  Aligned_cols=249  Identities=69%  Similarity=1.030  Sum_probs=244.9

Q ss_pred             ccceeeccccccccceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccchhhHHHhhhhcc
Q psy1329          93 MSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTNM  172 (465)
Q Consensus        93 Ms~i~~P~nqi~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~~~~~~~a~n~~~  172 (465)
                      |+ ||||+||+||||||||||||+|+|||||||||||.+||+|.|+|||||||+|+||.|||||                
T Consensus         1 ~~-i~tP~nQirLTNVavVrlKK~GkRFEiAcYkNKV~~wRng~ekdlDEVLQthtVf~NVSKG----------------   63 (250)
T KOG2917|consen    1 MS-IFTPTNQIRLTNVAVVRLKKAGKRFEIACYKNKVVEWRNGVEKDLDEVLQTHTVFSNVSKG----------------   63 (250)
T ss_pred             CC-ccCcCCceEEEEEEEEEEeccCceEEEEEecchhhhhhhcCcccHHHHHHHhHhhhhcccc----------------
Confidence            44 9999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccccccccchhhhhhhccccccccccccCCHHHHHHhhCCCCHHHHHHHHhhcCccccCHHHHHHHHHHHHHHHHH
Q psy1329         173 LNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIAT  252 (465)
Q Consensus       173 ~~~~~~~~~~~~~~~~al~~~~v~~n~~kg~~A~~~dLkkaFgT~D~~ei~k~IL~kGelQ~s~~ER~~~iE~~~keI~~  252 (465)
                                                    +.|+++||+++|||+|+++||++||.+||+|+|++||..|++.++|+|++
T Consensus        64 ------------------------------~vAkk~dL~kaFg~~d~~~I~~eIl~kGe~QvsekeR~~~~~~~~r~I~~  113 (250)
T KOG2917|consen   64 ------------------------------QVAKKEDLIKAFGTTDETEICKEILSKGELQVSEKERHSQLEKTFRDIVT  113 (250)
T ss_pred             ------------------------------ccccHHHHHHHhCCCcHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence                                          99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCCCcHHHHHHHHhhcCcccccCcCHHHHHHHHHHHhhhhcCceeeeEEEEEEEeeCchhHHHHHHHHH
Q psy1329         253 IVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLV  332 (465)
Q Consensus       253 iI~~~~inp~Tk~P~p~~~IE~al~~i~~~v~~~k~~k~Qalevik~L~~~ipI~ra~m~v~v~~~ip~~~~~~~~~~l~  332 (465)
                      +|+.+||||+|+||||+++||+||.++||++++|+|+|+||||+|++|++.|||+||+|++||.  +|.+..+.+.++|.
T Consensus       114 iv~~k~vnpetkRpyp~s~iekal~e~hfsv~~nk~sK~QaleaIkkL~~~~pI~rarMrlRv~--v~~~~~~~l~ekl~  191 (250)
T KOG2917|consen  114 IVAAKCVNPETKRPYPPSMIEKALQEIHFSVKTNKSSKQQALEAIKKLKEKMPIERARMRLRVS--VPVKEGKELKEKLK  191 (250)
T ss_pred             HHHHHhcCCccCCcCCHHHHHHHHHhcceeecCCchHHHHHHHHHHHHHHhCchhhhceeEEEE--EeccchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999  89999999999999


Q ss_pred             hhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEeeeeeeccCchh
Q psy1329         333 KCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEE  390 (465)
Q Consensus       333 ~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl~~~~~~e~~e~  390 (465)
                      ++..+++.|+|++++|.++|+|+||.||+|+++++++|+|+|.++||+++++.||++.
T Consensus       192 ~l~~~ve~e~~~~~~~~~~~lI~pg~fr~~d~lvr~etk~kg~leiL~~~e~~e~e~~  249 (250)
T KOG2917|consen  192 ELIDSVESEDWDPDQLECVCLIDPGCFREIDELVRKETKGKGRLEILDLKEVEEGEEC  249 (250)
T ss_pred             HHhhccccccCCCCceEEEEEEcCCchHHHHHHHhhhccccceEEEEeeccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999863

>TIGR00291 RNA_SBDS rRNA metabolism protein, SBDS family Back     alignment and domain information
>PRK13760 putative RNA-associated protein; Provisional Back     alignment and domain information
>PTZ00448 hypothetical protein; Provisional Back     alignment and domain information
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants [] Back     alignment and domain information
>KOG2917|consensus Back     alignment and domain information
>PTZ00448 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00291 RNA_SBDS rRNA metabolism protein, SBDS family Back     alignment and domain information
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13760 putative RNA-associated protein; Provisional Back     alignment and domain information
>PF01172 SBDS: Shwachman-Bodian-Diamond syndrome (SBDS) protein ; InterPro: IPR019783 This entry represents the N-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants [] Back     alignment and domain information
>PF01172 SBDS: Shwachman-Bodian-Diamond syndrome (SBDS) protein ; InterPro: IPR019783 This entry represents the N-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants [] Back     alignment and domain information
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants [] Back     alignment and domain information
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes Back     alignment and domain information
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins Back     alignment and domain information
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] Back     alignment and domain information
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O) Back     alignment and domain information
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G Back     alignment and domain information
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2 Back     alignment and domain information
>cd01514 Elongation_Factor_C Elongation factor G C-terminus Back     alignment and domain information
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p Back     alignment and domain information
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p Back     alignment and domain information
>smart00838 EFG_C Elongation factor G C-terminus Back     alignment and domain information
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane Back     alignment and domain information
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family Back     alignment and domain information
>PRK11568 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
2kdo_A252 Structure Of The Human Shwachman-Bodian-Diamond Syn 5e-81
2kdo_A252 Structure Of The Human Shwachman-Bodian-Diamond Syn 3e-17
2l9n_A252 Structure Of The Human Shwachman-Bodian-Diamond Syn 6e-81
2l9n_A252 Structure Of The Human Shwachman-Bodian-Diamond Syn 3e-17
1p9q_C256 Structure Of A Hypothetical Protein Af0491 From Arc 2e-14
1t95_A240 Crystal Structure Of The Shwachman-Bodian-Diamond S 9e-14
2wbm_A252 Crystal Structure Of Mthsbds, The Homologue Of The 7e-11
>pdb|2KDO|A Chain A, Structure Of The Human Shwachman-Bodian-Diamond Syndrome Protein, Sbds Length = 252 Back     alignment and structure 
Iteration: 1

 Score =  298 bits (762), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 155/296 (52%), Positives = 197/296 (66%), Gaps = 53/296 (17%)
Query: 96  IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
           IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+ +E                  
Sbjct: 5   IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVE------------------ 46
Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
                                       KD+DEVLQTH+VF NVSKGQ A KEDL  AF 
Sbjct: 47  ----------------------------KDLDEVLQTHSVFVNVSKGQVAKKEDLISAFG 78
Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
           T+DQTEICK IL KGE+Q+SDKER +Q+E  F+DIATIV++KC+N ETKRP+TV +IE  
Sbjct: 79  TDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERA 138
Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVR--VEVSAGXXXXXXXXXXXXX 333
           +K IH+SV  NK++KQQALEVI  LK+ M IERA MR+R  + V+ G             
Sbjct: 139 MKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPL--- 195
Query: 334 CATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEE 389
               +E+E++ G  L ++CLIDPG +REIDEL++ ET+G+G+LE+LNLK+V EG+E
Sbjct: 196 -IKVIESEDY-GQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDE 249
>pdb|2KDO|A Chain A, Structure Of The Human Shwachman-Bodian-Diamond Syndrome Protein, Sbds Length = 252 Back     alignment and structure
>pdb|2L9N|A Chain A, Structure Of The Human Shwachman-Bodian-Diamond Syndrome (Sbds) Protein Length = 252 Back     alignment and structure
>pdb|2L9N|A Chain A, Structure Of The Human Shwachman-Bodian-Diamond Syndrome (Sbds) Protein Length = 252 Back     alignment and structure
>pdb|1P9Q|C Chain C, Structure Of A Hypothetical Protein Af0491 From Archaeoglobus Fulgidus Length = 256 Back     alignment and structure
>pdb|1T95|A Chain A, Crystal Structure Of The Shwachman-Bodian-Diamond Syndrome Protein Orthologue From Archaeoglobus Fulgidus Length = 240 Back     alignment and structure
>pdb|2WBM|A Chain A, Crystal Structure Of Mthsbds, The Homologue Of The Shwachman-Bodian-Diamond Syndrome Protein In The Euriarchaeon Methanothermobacter Thermautotrophicus Length = 252 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
2kdo_A252 Ribosome maturation protein SBDS; SBDS protein, pr 4e-79
2kdo_A252 Ribosome maturation protein SBDS; SBDS protein, pr 5e-32
2kdo_A252 Ribosome maturation protein SBDS; SBDS protein, pr 1e-12
1t95_A240 Hypothetical protein AF0491; shwachman-bodian-diam 9e-77
1t95_A240 Hypothetical protein AF0491; shwachman-bodian-diam 2e-30
1t95_A240 Hypothetical protein AF0491; shwachman-bodian-diam 8e-13
2wbm_A252 MTHSBDS, ribosome maturation protein SDO1 homolog; 3e-73
2wbm_A252 MTHSBDS, ribosome maturation protein SDO1 homolog; 4e-30
2wbm_A252 MTHSBDS, ribosome maturation protein SDO1 homolog; 6e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A Length = 252 Back     alignment and structure
 Score =  245 bits (627), Expect = 4e-79
 Identities = 160/295 (54%), Positives = 202/295 (68%), Gaps = 49/295 (16%)

Query: 96  IFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSK 155
           IFTPTNQIR+TNVA+VRMK+AGKRFEIACYKNKV+ WR+                     
Sbjct: 5   IFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSG-------------------- 44

Query: 156 GQAANKEDLKKAFNTNMLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFN 215
                                      EKD+DEVLQTH+VF NVSKGQ A KEDL  AF 
Sbjct: 45  --------------------------VEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFG 78

Query: 216 TEDQTEICKLILMKGELQISDKERSSQIENQFKDIATIVSEKCINTETKRPFTVSMIEAG 275
           T+DQTEICK IL KGE+Q+SDKER +Q+E  F+DIATIV++KC+N ETKRP+TV +IE  
Sbjct: 79  TDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERA 138

Query: 276 LKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCA 335
           +K IH+SV  NK++KQQALEVI  LK+ M IERA MR+R  +     + KKLKEKL    
Sbjct: 139 MKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPV--NEGKKLKEKLKPLI 196

Query: 336 TSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEE 390
             +E+E++ G  L ++CLIDPG +REIDEL++ ET+G+G+LE+LNLK+V EG+E+
Sbjct: 197 KVIESEDY-GQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDEK 250
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A Length = 252 Back     alignment and structure
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A Length = 252 Back     alignment and structure
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C Length = 240 Back     alignment and structure
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C Length = 240 Back     alignment and structure
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C Length = 240 Back     alignment and structure
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 252 Back     alignment and structure
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 252 Back     alignment and structure
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 252 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query465
2kdo_A252 Ribosome maturation protein SBDS; SBDS protein, pr 100.0
2wbm_A252 MTHSBDS, ribosome maturation protein SDO1 homolog; 100.0
1t95_A240 Hypothetical protein AF0491; shwachman-bodian-diam 100.0
2kdo_A252 Ribosome maturation protein SBDS; SBDS protein, pr 100.0
2wbm_A252 MTHSBDS, ribosome maturation protein SDO1 homolog; 100.0
1t95_A240 Hypothetical protein AF0491; shwachman-bodian-diam 99.97
1nyn_A131 Hypothetical 12.0 kDa protein in NAM8-GAR1 interge 99.88
1nyn_A131 Hypothetical 12.0 kDa protein in NAM8-GAR1 interge 99.87
3lh2_S76 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immun 94.1
2cve_A191 Hypothetical protein TTHA1053; COG1739, UPF0029, s 91.15
1vi7_A217 Hypothetical protein YIGZ; structural genomics, un 88.55
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A Back     alignment and structure
Probab=100.00  E-value=1.2e-83  Score=621.49  Aligned_cols=250  Identities=64%  Similarity=0.996  Sum_probs=245.3

Q ss_pred             CccceeeccccccccceEEEEEEecCeeEEEEechhhHHHhhcCCCCChhhhhccCceeeecccCcccchhhHHHhhhhc
Q psy1329          92 DMSKIFTPTNQIRMTNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTN  171 (465)
Q Consensus        92 GMs~i~~P~nqi~ltnv~ivrlkk~gkrFEIacy~nkv~~~R~g~e~dideVLq~~~VF~nvsKG~~~~~~~~~~a~n~~  171 (465)
                      ||++||||+||+|||||+|||||++|+||||+||||+|.+||+|.++||+||||+++||+|+|||               
T Consensus         1 ~m~~i~~P~~qi~ltnv~ivr~k~~g~~FEI~v~~~~v~~wr~g~~~~l~eVl~~~~VF~n~skG---------------   65 (252)
T 2kdo_A            1 GHMSIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKG---------------   65 (252)
T ss_dssp             CCSCSCCCCCSSCTTSEEEEEEECSSCEEEEEEESSSGGGGGTTCCSCSSTTCCCCCEEEETTTT---------------
T ss_pred             CCCCccCCCCcEEecceEEEEEEcCCcEEEEEECHHHHHHHHcCCCCCHHHHhCcceeeecCccc---------------
Confidence            89999999999999999999999999999999999999999999999999999999999999999               


Q ss_pred             cccccccccccccchhhhhhhccccccccccccCCHHHHHHhhCCCCHHHHHHHHhhcCccccCHHHHHHHHHHHHHHHH
Q psy1329         172 MLNISSLTSFREKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLILMKGELQISDKERSSQIENQFKDIA  251 (465)
Q Consensus       172 ~~~~~~~~~~~~~~~~~al~~~~v~~n~~kg~~A~~~dLkkaFgT~D~~ei~k~IL~kGelQ~s~~ER~~~iE~~~keI~  251 (465)
                                                     ++|++++|.++|||+|.++||++||++||+|+|++||+.++|+++|||+
T Consensus        66 -------------------------------~~As~~~L~~~FGT~d~~eii~~IL~kGe~Q~s~~eR~~~~e~k~r~Ii  114 (252)
T 2kdo_A           66 -------------------------------QVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIA  114 (252)
T ss_dssp             -------------------------------EEECHHHHHHHTSCSCHHHHHHHHHHSSEECCCSSSSSSSCTTHHHHHH
T ss_pred             -------------------------------ccCCHHHHHHhhCCCCHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHH
Confidence                                           9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCcHHHHHHHHhhcCcccccCcCHHHHHHHHHHHhhhhcCceeeeEEEEEEEeeCchhHHHHHHHH
Q psy1329         252 TIVSEKCINTETKRPFTVSMIEAGLKQIHFSVNVNKNSKQQALEVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKL  331 (465)
Q Consensus       252 ~iI~~~~inp~Tk~P~p~~~IE~al~~i~~~v~~~k~~k~Qalevik~L~~~ipI~ra~m~v~v~~~ip~~~~~~~~~~l  331 (465)
                      ++|+++||||+|++|||++|||+||+++||+|||+||+|+||+++||+|+++|||+||+|+++|+  +|.++++++++.|
T Consensus       115 ~~Ia~~~VnP~T~~P~p~~~IE~Am~e~~~~vdp~ksak~Qalevik~L~~~iPI~ra~m~l~v~--vp~~~~~~~~~~l  192 (252)
T 2kdo_A          115 TIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFI--LPVNEGKKLKEKL  192 (252)
T ss_dssp             HHHHTTEECCTTSCTTCHHHHHHHHHHHSSCSSTTCCHHHHHHHHHHHHHHHSCCEEECCCEEEE--CBHHHHHHHTTTH
T ss_pred             HHHHHhccCCCCCCCCCHHHHHHHHHhCCcccCCCCCHHHHHHHHHHHhhhhCCeeeeeEEEEEE--EcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999  9999999999999


Q ss_pred             HhhccccceeeeeCCeEEEEEEecCCChHHHHHHHHhhcCCceEEEEeeeeeeccCchh
Q psy1329         332 VKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEE  390 (465)
Q Consensus       332 ~~~~~~ve~ee~~~g~~~~~~~I~PG~~rei~~~v~~~tkG~g~~evl~~~~~~e~~e~  390 (465)
                      .+++..+++|+|.++ |.++|+||||+||+|+++|+++|+|+|+++||+++.+.||++.
T Consensus       193 ~~~~~~v~~ee~~~~-~~~v~~I~pg~~~~~~~~v~~~tkG~~~~evl~~~~~~~~~~~  250 (252)
T 2kdo_A          193 KPLIKVIESEDYGQQ-LEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDEK  250 (252)
T ss_dssp             HHHTCEEEEECCSSB-CCEEECCCGGGHHHHHHHHHHHTTTTSEEEECCCSSSCCCBSC
T ss_pred             HHhhCcceeeeccCC-eEEEEEECCcchHHHHHHHHHhcCCCEEEEEEEEeeeecCccc
Confidence            999667999999766 9999999999999999999999999999999999999998864
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C Back     alignment and structure
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A Back     alignment and structure
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C Back     alignment and structure
>1nyn_A Hypothetical 12.0 kDa protein in NAM8-GAR1 intergenic region; hypothetical protein, structural genomics, PSI; NMR {Saccharomyces cerevisiae} SCOP: d.235.1.1 Back     alignment and structure
>1nyn_A Hypothetical 12.0 kDa protein in NAM8-GAR1 intergenic region; hypothetical protein, structural genomics, PSI; NMR {Saccharomyces cerevisiae} SCOP: d.235.1.1 Back     alignment and structure
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene} Back     alignment and structure
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2 Back     alignment and structure
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 465
d1t95a276 d.235.1.2 (A:11-86) Hypothetical protein AF0491, N 2e-28
d1t95a276 d.235.1.2 (A:11-86) Hypothetical protein AF0491, N 4e-23
d1t95a175 a.5.8.1 (A:87-161) Hypothetical protein AF0491, mi 1e-25
d1t95a175 a.5.8.1 (A:87-161) Hypothetical protein AF0491, mi 3e-19
d1nyna_111 d.235.1.1 (A:) Hypothetical protein Yhr087W {Baker 5e-14
d1nyna_111 d.235.1.1 (A:) Hypothetical protein Yhr087W {Baker 1e-11
>d1t95a2 d.235.1.2 (A:11-86) Hypothetical protein AF0491, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 76 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FYSH domain
superfamily: FYSH domain
family: Hypothetical protein AF0491, N-terminal domain
domain: Hypothetical protein AF0491, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  105 bits (263), Expect = 2e-28
 Identities = 21/75 (28%), Positives = 39/75 (52%)

Query: 15 NVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKK 74
             I R++K G+ FE+          +   E + +++L    VF +  KG+ A+ ++L+K
Sbjct: 2  KAVIARLRKGGEEFEVLVDPYLARDLKEGKEVNFEDLLAAEEVFKDAKKGERASVDELRK 61

Query: 75 AFNTEDQTEICKLIL 89
           F T+D  EI + I+
Sbjct: 62 IFGTDDVFEIARKII 76
>d1t95a2 d.235.1.2 (A:11-86) Hypothetical protein AF0491, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 76 Back     information, alignment and structure
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 75 Back     information, alignment and structure
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 75 Back     information, alignment and structure
>d1nyna_ d.235.1.1 (A:) Hypothetical protein Yhr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 Back     information, alignment and structure
>d1nyna_ d.235.1.1 (A:) Hypothetical protein Yhr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query465
d1t95a276 Hypothetical protein AF0491, N-terminal domain {Ar 99.96
d1t95a175 Hypothetical protein AF0491, middle domain {Archae 99.94
d1t95a276 Hypothetical protein AF0491, N-terminal domain {Ar 99.93
d1nyna_111 Hypothetical protein Yhr087W {Baker's yeast (Sacch 99.79
d1nyna_111 Hypothetical protein Yhr087W {Baker's yeast (Sacch 99.73
d1t95a175 Hypothetical protein AF0491, middle domain {Archae 99.67
d1t95a373 Hypothetical protein AF0491, C-terminal domain {Ar 99.6
d1vi7a271 Hypothetical protein YigZ, C-terminal domain {Esch 96.0
d2bv3a589 Elongation factor G (EF-G) {Thermus thermophilus [ 94.73
d2dy1a596 Elongation factor G (EF-G) {Thermus thermophilus, 94.65
d1n0ua5117 Elongation factor 2 (eEF-2) {Baker's yeast (Saccha 91.29
>d1t95a2 d.235.1.2 (A:11-86) Hypothetical protein AF0491, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FYSH domain
superfamily: FYSH domain
family: Hypothetical protein AF0491, N-terminal domain
domain: Hypothetical protein AF0491, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=1.3e-29  Score=204.62  Aligned_cols=76  Identities=28%  Similarity=0.519  Sum_probs=74.8

Q ss_pred             ceEEEEEEeecCeeEEEEeecchhHHhhccCcCCchhhhcccceeeeccccccCCHHHHHHhhCCCCHHHHHHHHH
Q psy1329          14 TNVAIVRMKKAGKRFEIACYKNKVISWRNNIEKDIDEVLQTHTVFTNVSKGQAANKEDLKKAFNTEDQTEICKLIL   89 (465)
Q Consensus        14 tNvvIvRlKk~GkrFEIavyPnkv~~~R~G~e~dIdeVLq~d~VF~nvsKGe~As~edL~kaFGTtD~~eIak~IL   89 (465)
                      +|++||||+++|+||||+||||+|++||+|.++||++||++++||+|++||++||+++|.++|||+|..+||+.||
T Consensus         1 d~avv~rlk~~g~~FEI~vdp~~~~~~r~g~~~~l~dvl~~~~Vf~d~~kG~~As~~~L~~~FgT~d~~~I~~~IL   76 (76)
T d1t95a2           1 DKAVIARLRKGGEEFEVLVDPYLARDLKEGKEVNFEDLLAAEEVFKDAKKGERASVDELRKIFGTDDVFEIARKII   76 (76)
T ss_dssp             CCCEEEEEEETTEEEEEEECHHHHHHHHTTCCCCHHHHBSSSCCEEETTTTEECCHHHHHHHHSCCCHHHHHHHHH
T ss_pred             CceEEEEEEeCCeEEEEEECHHHHHHHHCCCccchhHheeeeeEEeccccCccCCHHHHHHHhCCCCHHHHHHHhC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999999997
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t95a2 d.235.1.2 (A:11-86) Hypothetical protein AF0491, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1nyna_ d.235.1.1 (A:) Hypothetical protein Yhr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nyna_ d.235.1.1 (A:) Hypothetical protein Yhr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t95a3 d.58.11.3 (A:162-234) Hypothetical protein AF0491, C-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1vi7a2 d.58.11.2 (A:138-208) Hypothetical protein YigZ, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} Back     information, alignment and structure
>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure