Psyllid ID: psy151

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MSSLNKLLSEDSDSKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVTPHIMILPSDLRYFVKAL
Secondary Structure (PSIPRED)
ccccccccccccEEEccccEEEEccEEEEEEcHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHccccccccEEEEcccccccEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHccccccEEEEEcEEEEEEccHHHHHHHcHHHHccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHccccccccEEEEcccccHHHEEc
Coil and Loop (DISEMBL)
msslnkllsedsdskprpwvldiSGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLqqqcyyplippnvelpvdmECWElhaqlpvtphimilpsdLRYFVKAL
Flexible Loop (DISEMBL)
msslnkllsedsdskprpwvLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVTPHIMILPSDLRYFVKAL
Low Complexity Region (SEG)
MSSLNKLLSEDSDSKPRPWVLDIsgvvvgvtsvdvLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVTPHIMILPSDLRYFVKAL
Disordered region (IsUnstruct)
*****************PWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVTPHIMILPSDLRYFV***
Disordered Region (DISOPRED)
*********EDSDSKPRPWVLDISGVVVGVTSVDVLMHLG*************LSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVTPHIMILPSDLRYFVKAL
Disordered Region (DISEMBL)
***************PRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVTPHIMILPSDLRYFVKAL
Disordered Region (DISPRO)
*SSLNKLLSEDSDSKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVTPHIMILPSDLRYFVKAL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSLNKLLSEDSDSKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVTPHIMILPSDLRYFVKAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
Q14181	598	DNA polymerase alpha subu	yes	N/A	0.827	0.152	0.505	2e-23
Q58D13	604	DNA polymerase alpha subu	yes	N/A	0.963	0.175	0.467	4e-23
O89043	600	DNA polymerase alpha subu	yes	N/A	0.827	0.151	0.494	3e-22
P33611	600	DNA polymerase alpha subu	yes	N/A	0.827	0.151	0.494	5e-22
O74946	574	DNA polymerase alpha subu	yes	N/A	0.845	0.162	0.408	2e-13
Q9VB62	609	DNA polymerase alpha subu	yes	N/A	0.827	0.149	0.393	6e-13
Q21625	581	DNA polymerase alpha subu	yes	N/A	0.763	0.144	0.420	5e-09

>sp|Q14181|DPOA2_HUMAN DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 67/91 (73%)

Query: 18  PWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
           P  L I+GV+ G+TS D+L HLG EE +++   +DR SR+  H+L Q+ YYPL PP  ++
Sbjct: 459 PCSLSINGVIFGLTSTDLLFHLGAEEISSSSGTSDRFSRILKHILTQRSYYPLYPPQEDM 518

Query: 78  PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
            +D E + ++AQLPVTP ++I+PS+LRYFVK
Sbjct: 519 AIDYESFYVYAQLPVTPDVLIIPSELRYFVK 549

May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha/primase complex to the cellular replication machinery.
Homo sapiens (taxid: 9606)

>sp|Q58D13|DPOA2_BOVIN DNA polymerase alpha subunit B OS=Bos taurus GN=POLA2 PE=2 SV=1

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 71/109 (65%), Gaps = 3/109 (2%)

Query: 3   SLNKLLSEDSDSK---PRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLAS 59
           S + LL ED         P  L I+GV+ G+TS D+L H+G EE +++   +DR SR+  
Sbjct: 443 SCSDLLREDKKRVRLVSEPCTLSINGVIFGLTSTDLLFHMGAEEISSSSGTSDRFSRILR 502

Query: 60  HLLQQQCYYPLIPPNVELPVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
           H+L Q+ YYPL PP  ++ +D E + L+AQLPVTP + I PS+LRYFVK
Sbjct: 503 HILTQRSYYPLYPPQEDMAIDYENFYLYAQLPVTPDVFIAPSELRYFVK 551

May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha/primase complex to the cellular replication machinery.

Bos taurus (taxid: 9913)

>sp|O89043|DPOA2_RAT DNA polymerase alpha subunit B OS=Rattus norvegicus GN=Pola2 PE=2 SV=2

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 65/91 (71%)

Query: 18  PWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
           P  L I+GV+ G+TS D+L H+G EE  ++   +DR SR+  H+L Q+ YYPL PP+ ++
Sbjct: 459 PCNLSINGVMFGLTSTDLLFHIGAEEICSSSGTSDRFSRILKHILTQRSYYPLYPPHEDM 518

Query: 78  PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
            +D E +  +AQLPVTP + I+PS+LRYFVK
Sbjct: 519 AIDYENFYTYAQLPVTPDVFIVPSELRYFVK 549

May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha/primase complex to the cellular replication machinery.

Rattus norvegicus (taxid: 10116)

>sp|P33611|DPOA2_MOUSE DNA polymerase alpha subunit B OS=Mus musculus GN=Pola2 PE=1 SV=2

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 65/91 (71%)

Query: 18  PWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
           P  L I+GV+ G+TS D+L H+G EE  ++   +DR SR+  H+L Q+ YYPL PP+ ++
Sbjct: 459 PCSLSINGVMFGLTSTDLLFHIGAEEIFSSSGTSDRFSRVLKHILTQRSYYPLYPPHEDM 518

Query: 78  PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
            +D E +  +AQLPVTP + I+PS+LRYFVK
Sbjct: 519 AIDYENFYTYAQLPVTPDVFIVPSELRYFVK 549

May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha/primase complex to the cellular replication machinery.

Mus musculus (taxid: 10090)

>sp|O74946|DPOA2_SCHPO DNA polymerase alpha subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol12 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 5/98 (5%)

Query: 16  PRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNV 75
           P P +  I+ VV GV++ D+L+H  REE    P   +  +RL SH+L Q+ +YPL P   
Sbjct: 421 PNPCMFSINDVVFGVSTNDILLHTSREELFRLPSHGNLFARLVSHVLHQRHFYPLFPGGS 480

Query: 76  -----ELPVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
                   +D+   +L   L   P I+ILPSDLRYFVK
Sbjct: 481 LEKCNPSNLDIAHLKLGEFLNTMPDILILPSDLRYFVK 518

May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha/primase complex to the cellular replication machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9VB62|DPOA2_DROME DNA polymerase alpha subunit B OS=Drosophila melanogaster GN=DNApol-alpha73 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 16  PRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPP-N 74
           P P ++D+ G  +GVTS DV+ HL   EFA      +R+ R  +HL  Q  +YPL PP +
Sbjct: 470 PDPSLVDLDGFTLGVTSTDVVDHLLSHEFAV--NAGERMHRAINHLFHQGSFYPLYPPAD 527

Query: 75  VELPVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
            ++  D +    +AQL   P+++ILPSD R+F++
Sbjct: 528 EDMAYDSQLALKYAQLKQLPNVLILPSDQRHFIR 561

May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha/primase complex to the cellular replication machinery.

Drosophila melanogaster (taxid: 7227)

>sp|Q21625|DPOA2_CAEEL DNA polymerase alpha subunit B OS=Caenorhabditis elegans GN=div-1 PE=3 SV=3

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 18  PWVLDISGVVVGVTSVDVLMHLGREEF--AAAPEMTDRLSRLASHLLQQQCYYPLIPPNV 75
           P +  ISGV V +TS + +  L   EF  +A  E  DR++RL+SHLL QQC YPL P   
Sbjct: 441 PCIFRISGVEVAMTSSEPIQALSNTEFHRSANQENIDRVARLSSHLLTQQCMYPLEP--T 498

Query: 76  ELPVDMECWELHAQLPVTPHIMILPSDL 103
           E+P  M        +  TPHI+  P+ L
Sbjct: 499 EVPASMGDLLDVCCIGSTPHIVFAPTKL 526

May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha/primase complex to the cellular replication machinery.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
346466585	543	hypothetical protein [Amblyomma maculatu	0.9	0.182	0.545	5e-25
443709652	465	hypothetical protein CAPTEDRAFT_95153, p	0.809	0.191	0.561	1e-24
403294139	662	PREDICTED: DNA polymerase alpha subunit	0.827	0.137	0.527	2e-22
296218739	598	PREDICTED: DNA polymerase alpha subunit	0.827	0.152	0.516	5e-22
363746899	238	PREDICTED: DNA polymerase alpha subunit	0.845	0.390	0.516	5e-22
208967074	598	polymerase (DNA directed) alpha 2 [synth	0.827	0.152	0.505	6e-22
439601	598	DNA polymerase alpha [Homo sapiens]	0.827	0.152	0.505	6e-22
355566320	598	DNA polymerase alpha 70 kDa subunit [Mac	0.827	0.152	0.505	6e-22
410251086	598	polymerase (DNA directed), alpha 2 (70kD	0.827	0.152	0.505	6e-22
397516918	598	PREDICTED: LOW QUALITY PROTEIN: DNA poly	0.827	0.152	0.505	6e-22

>gi|346466585|gb|AEO33137.1| hypothetical protein [Amblyomma maculatum]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 72/99 (72%)

Query: 10  EDSDSKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYP 69
           E+    P P +LD+ G +VG TSVDVLMHLGREE + +P+MTDRLSRL  H+L Q  +YP
Sbjct: 395 ENITCAPNPCLLDVGGYIVGATSVDVLMHLGREEISFSPKMTDRLSRLTKHILTQHSFYP 454

Query: 70  LIPPNVELPVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
           L PP+ ++ VD+   +   +L VTPH+++LPSDLR FVK
Sbjct: 455 LYPPSEDINVDLSHLDDSGRLTVTPHLLVLPSDLRGFVK 493

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443709652|gb|ELU04244.1| hypothetical protein CAPTEDRAFT_95153, partial [Capitella teleta]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 67/89 (75%)

Query: 18  PWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
           P  L I GV++G+TS D+L HLG EE +  P   DRLSRLA+H++ Q+ YYPL PP+ ++
Sbjct: 330 PSTLSIDGVIIGITSTDILFHLGAEEISMPPGGADRLSRLANHVITQRSYYPLYPPSEDV 389

Query: 78  PVDMECWELHAQLPVTPHIMILPSDLRYF 106
            +D E WE H++LP TPH++ILPSDLRYF
Sbjct: 390 SIDYEHWEAHSKLPTTPHLLILPSDLRYF 418

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|403294139|ref|XP_003938060.1| PREDICTED: DNA polymerase alpha subunit B [Saimiri boliviensis boliviensis]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 66/91 (72%)

Query: 18  PWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
           P  L I+GV+ G+TS D+L HLG EE +++   +DR SR+  H+L Q+ YYPL PP  E+
Sbjct: 523 PCSLSINGVIFGLTSTDLLFHLGAEEISSSSGTSDRFSRILKHILTQRSYYPLYPPQEEM 582

Query: 78  PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
            +D E + ++AQLPVTP I I+PS+LRYFVK
Sbjct: 583 AIDYETFYVYAQLPVTPDIFIIPSELRYFVK 613

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296218739|ref|XP_002755571.1| PREDICTED: DNA polymerase alpha subunit B [Callithrix jacchus]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 66/91 (72%)

Query: 18  PWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
           P  L I+GV+ G+TS D+L HLG EE +++   +DR SR+  H+L Q+ YYPL PP  ++
Sbjct: 459 PCSLSINGVIFGLTSTDLLFHLGAEEISSSSGTSDRFSRIFKHILTQRSYYPLYPPQEDM 518

Query: 78  PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
            +D E + ++AQLPVTP I I+PS+LRYFVK
Sbjct: 519 AIDYETFYVYAQLPVTPDIFIIPSELRYFVK 549

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|363746899|ref|XP_003643842.1| PREDICTED: DNA polymerase alpha subunit B-like, partial [Gallus gallus]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 68/93 (73%)

Query: 16  PRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNV 75
           P P  LDI+GVV+G+TS D+L H+G EE +++   +DR +R+  H+L Q+ +YPL PP  
Sbjct: 99  PDPCTLDINGVVLGLTSTDLLFHMGAEEISSSSGTSDRFTRILQHILTQRSFYPLYPPAE 158

Query: 76  ELPVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
           E+ VD E +   A LPVTPH++I+PS+LRYFVK
Sbjct: 159 EMNVDYESFSSFASLPVTPHVLIIPSELRYFVK 191

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|208967074|dbj|BAG73551.1| polymerase (DNA directed) alpha 2 [synthetic construct]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 67/91 (73%)

Query: 18  PWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
           P  L I+GV+ G+TS D+L HLG EE +++   +DR SR+  H+L Q+ YYPL PP  ++
Sbjct: 459 PCSLSINGVIFGLTSTDLLFHLGAEEISSSSGTSDRFSRILKHILTQRSYYPLYPPQEDM 518

Query: 78  PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
            +D E + ++AQLPVTP ++I+PS+LRYFVK
Sbjct: 519 AIDYESFYVYAQLPVTPDVLIIPSELRYFVK 549

Source: synthetic construct

Species: synthetic construct

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

>gi|439601|gb|AAA16459.1| DNA polymerase alpha [Homo sapiens]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 67/91 (73%)

Query: 18  PWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
           P  L I+GV+ G+TS D+L HLG EE +++   +DR SR+  H+L Q+ YYPL PP  ++
Sbjct: 459 PCSLSINGVIFGLTSTDLLFHLGAEEISSSSGTSDRFSRILKHILTQRSYYPLYPPQEDM 518

Query: 78  PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
            +D E + ++AQLPVTP ++I+PS+LRYFVK
Sbjct: 519 AIDYESFYVYAQLPVTPDVLIIPSELRYFVK 549

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355566320|gb|EHH22699.1| DNA polymerase alpha 70 kDa subunit [Macaca mulatta]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 67/91 (73%)

Query: 18  PWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
           P  L I+GV+ G+TS D+L HLG EE +++   +DR SR+  H+L Q+ YYPL PP  ++
Sbjct: 459 PCSLSINGVIFGLTSTDLLFHLGAEEISSSSGTSDRFSRILKHILTQRSYYPLYPPQEDM 518

Query: 78  PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
            +D E + ++AQLPVTP ++I+PS+LRYFVK
Sbjct: 519 AIDYETFYVYAQLPVTPDVLIIPSELRYFVK 549

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410251086|gb|JAA13510.1| polymerase (DNA directed), alpha 2 (70kD subunit) [Pan troglodytes]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 67/91 (73%)

Query: 18  PWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
           P  L I+GV+ G+TS D+L HLG EE +++   +DR SR+  H+L Q+ YYPL PP  ++
Sbjct: 459 PCSLSINGVIFGLTSTDLLFHLGAEEISSSSGTSDRFSRILKHILTQRSYYPLYPPQEDM 518

Query: 78  PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
            +D E + ++AQLPVTP ++I+PS+LRYFVK
Sbjct: 519 AIDYESFYVYAQLPVTPDVLIIPSELRYFVK 549

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397516918|ref|XP_003828668.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase alpha subunit B [Pan paniscus]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 67/91 (73%)

Query: 18  PWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
           P  L I+GV+ G+TS D+L HLG EE +++   +DR SR+  H+L Q+ YYPL PP  ++
Sbjct: 459 PCSLSINGVIFGLTSTDLLFHLGAEEISSSSGTSDRFSRILKHILTQRSYYPLYPPQEDM 518

Query: 78  PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
            +D E + ++AQLPVTP ++I+PS+LRYFVK
Sbjct: 519 AIDYESFYVYAQLPVTPDVLIIPSELRYFVK 549

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
UNIPROTKB|H0YDR7	261	POLA2 "DNA polymerase alpha su	0.845	0.356	0.440	7.5e-18
UNIPROTKB|B4DNB4	361	POLA2 "cDNA FLJ60312, highly s	0.827	0.252	0.439	2.5e-17
UNIPROTKB|F1RQV4	598	POLA2 "Uncharacterized protein	0.845	0.155	0.419	8.7e-17
UNIPROTKB|Q14181	598	POLA2 "DNA polymerase alpha su	0.827	0.152	0.439	1.1e-16
UNIPROTKB|F6XEE7	595	POLA2 "Uncharacterized protein	0.827	0.152	0.439	1.8e-16
UNIPROTKB|F1MXS4	600	POLA2 "DNA polymerase alpha su	0.963	0.176	0.412	1.8e-16
UNIPROTKB|F1MLC0	604	POLA2 "DNA polymerase alpha su	0.963	0.175	0.412	1.9e-16
UNIPROTKB|Q58D13	604	POLA2 "DNA polymerase alpha su	0.963	0.175	0.412	1.9e-16
RGD|621817	600	Pola2 "polymerase (DNA directe	0.827	0.151	0.428	1.3e-15
UNIPROTKB|G3V8U6	600	Pola2 "Polymerase (DNA directe	0.827	0.151	0.428	1.3e-15

UNIPROTKB|H0YDR7 POLA2 "DNA polymerase alpha subunit B" [Homo sapiens (taxid:9606)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 41/93 (44%), Positives = 58/93 (62%)

Query:    18 PWVLDIXXXXXXXXXXXXLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
             P  L I            L HLG EE +++   +DR SR+  H+L Q+ YYPL PP  ++
Sbjct:   129 PCSLSINGVIFGLTSTDLLFHLGAEEISSSSGTSDRFSRILKHILTQRSYYPLYPPQEDM 188

Query:    78 PVDMECWELHAQLPVTPHIMILPSDLRYFVKAL 110
              +D E + ++AQLPVTP ++I+PS+LRYFVK L
Sbjct:   189 AIDYESFYVYAQLPVTPDVLIIPSELRYFVKFL 221

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|B4DNB4 POLA2 "cDNA FLJ60312, highly similar to DNA polymerase subunit alpha B" [Homo sapiens (taxid:9606)]

 Score = 215 (80.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 40/91 (43%), Positives = 57/91 (62%)

Query:    18 PWVLDIXXXXXXXXXXXXLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
             P  L I            L HLG EE +++   +DR SR+  H+L Q+ YYPL PP  ++
Sbjct:   251 PCSLSINGVIFGLTSTDLLFHLGAEEISSSSGTSDRFSRILKHILTQRSYYPLYPPQEDM 310

Query:    78 PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
              +D E + ++AQLPVTP ++I+PS+LRYFVK
Sbjct:   311 AIDYESFYVYAQLPVTPDVLIIPSELRYFVK 341

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1RQV4 POLA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 216 (81.1 bits), Expect = 8.7e-17, P = 8.7e-17
 Identities = 39/93 (41%), Positives = 55/93 (59%)

Query:    16 PRPWVLDIXXXXXXXXXXXXLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNV 75
             P P  L +            L H+G EE +++   +DR SR+  H+L Q+ YYPL PP  
Sbjct:   458 PEPCTLSVNGMIFGLTSTDLLFHMGAEEISSSSGTSDRFSRILKHILTQRSYYPLYPPQE 517

Query:    76 ELPVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
             ++ +D E +  HAQLPVTP + + PS+LRYFVK
Sbjct:   518 DVAIDYEHFYAHAQLPVTPDVFVAPSELRYFVK 550

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005658 "alpha DNA polymerase:primase complex" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q14181 POLA2 "DNA polymerase alpha subunit B" [Homo sapiens (taxid:9606)]

 Score = 215 (80.7 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 40/91 (43%), Positives = 57/91 (62%)

Query:    18 PWVLDIXXXXXXXXXXXXLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
             P  L I            L HLG EE +++   +DR SR+  H+L Q+ YYPL PP  ++
Sbjct:   459 PCSLSINGVIFGLTSTDLLFHLGAEEISSSSGTSDRFSRILKHILTQRSYYPLYPPQEDM 518

Query:    78 PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
              +D E + ++AQLPVTP ++I+PS+LRYFVK
Sbjct:   519 AIDYESFYVYAQLPVTPDVLIIPSELRYFVK 549

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

GO:0005658 "alpha DNA polymerase:primase complex" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006260 "DNA replication" evidence=NAS

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0003674 "molecular_function" evidence=ND

GO:0032201 "telomere maintenance via semi-conservative replication" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0000722 "telomere maintenance via recombination" evidence=TAS

GO:0000723 "telomere maintenance" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006270 "DNA replication initiation" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F6XEE7 POLA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 213 (80.0 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 40/91 (43%), Positives = 57/91 (62%)

Query:    18 PWVLDIXXXXXXXXXXXXLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
             P  L I            L H+G EE ++A   +DRLSR+  H+L Q+ YYPL PP  ++
Sbjct:   455 PCNLSINGVIFGLTSTDLLFHMGAEEISSASGTSDRLSRILKHILTQRSYYPLYPPQEDM 514

Query:    78 PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
              +D E + ++AQLP+TP I I+PS+L+YFVK
Sbjct:   515 AIDYENFYIYAQLPITPDIFIIPSELKYFVK 545

GO:0006260 "DNA replication" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1MXS4 POLA2 "DNA polymerase alpha subunit B" [Bos taurus (taxid:9913)]

 Score = 213 (80.0 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 45/109 (41%), Positives = 61/109 (55%)

Query:     3 SLNKLLSEDSDSK---PRPWVLDIXXXXXXXXXXXXLMHLGREEFAAAPEMTDRLSRLAS 59
             S + LL ED         P  L I            L H+G EE +++   +DR SR+  
Sbjct:   443 SCSDLLREDKKRVRLVSEPCTLSINGVIFGLTSTDLLFHMGAEEISSSSGTSDRFSRILR 502

Query:    60 HLLQQQCYYPLIPPNVELPVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
             H+L Q+ YYPL PP  ++ +D E + L+AQLPVTP + I PS+LRYFVK
Sbjct:   503 HILTQRSYYPLYPPQEDMAIDYENFYLYAQLPVTPDVFIAPSELRYFVK 551

GO:0006260 "DNA replication" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1MLC0 POLA2 "DNA polymerase alpha subunit B" [Bos taurus (taxid:9913)]

 Score = 213 (80.0 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 45/109 (41%), Positives = 61/109 (55%)

Query:     3 SLNKLLSEDSDSK---PRPWVLDIXXXXXXXXXXXXLMHLGREEFAAAPEMTDRLSRLAS 59
             S + LL ED         P  L I            L H+G EE +++   +DR SR+  
Sbjct:   443 SCSDLLREDKKRVRLVSEPCTLSINGVIFGLTSTDLLFHMGAEEISSSSGTSDRFSRILR 502

Query:    60 HLLQQQCYYPLIPPNVELPVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
             H+L Q+ YYPL PP  ++ +D E + L+AQLPVTP + I PS+LRYFVK
Sbjct:   503 HILTQRSYYPLYPPQEDMAIDYENFYLYAQLPVTPDVFIAPSELRYFVK 551

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005658 "alpha DNA polymerase:primase complex" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q58D13 POLA2 "DNA polymerase alpha subunit B" [Bos taurus (taxid:9913)]

 Score = 213 (80.0 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 45/109 (41%), Positives = 61/109 (55%)

Query:     3 SLNKLLSEDSDSK---PRPWVLDIXXXXXXXXXXXXLMHLGREEFAAAPEMTDRLSRLAS 59
             S + LL ED         P  L I            L H+G EE +++   +DR SR+  
Sbjct:   443 SCSDLLREDKKRVRLVSEPCTLSINGVIFGLTSTDLLFHMGAEEISSSSGTSDRFSRILR 502

Query:    60 HLLQQQCYYPLIPPNVELPVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
             H+L Q+ YYPL PP  ++ +D E + L+AQLPVTP + I PS+LRYFVK
Sbjct:   503 HILTQRSYYPLYPPQEDMAIDYENFYLYAQLPVTPDVFIAPSELRYFVK 551

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

RGD|621817 Pola2 "polymerase (DNA directed), alpha 2, accessory subunit" [Rattus norvegicus (taxid:10116)]

 Score = 205 (77.2 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/91 (42%), Positives = 55/91 (60%)

Query:    18 PWVLDIXXXXXXXXXXXXLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
             P  L I            L H+G EE  ++   +DR SR+  H+L Q+ YYPL PP+ ++
Sbjct:   459 PCNLSINGVMFGLTSTDLLFHIGAEEICSSSGTSDRFSRILKHILTQRSYYPLYPPHEDM 518

Query:    78 PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
              +D E +  +AQLPVTP + I+PS+LRYFVK
Sbjct:   519 AIDYENFYTYAQLPVTPDVFIVPSELRYFVK 549

GO:0000060 "protein import into nucleus, translocation" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IMP

GO:0005634 "nucleus" evidence=ISO

GO:0005658 "alpha DNA polymerase:primase complex" evidence=IC;ISO;TAS

GO:0005737 "cytoplasm" evidence=ISO

GO:0006260 "DNA replication" evidence=ISO;IMP;TAS

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|G3V8U6 Pola2 "Polymerase (DNA directed), alpha 2, isoform CRA_a" [Rattus norvegicus (taxid:10116)]

 Score = 205 (77.2 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/91 (42%), Positives = 55/91 (60%)

Query:    18 PWVLDIXXXXXXXXXXXXLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
             P  L I            L H+G EE  ++   +DR SR+  H+L Q+ YYPL PP+ ++
Sbjct:   459 PCNLSINGVMFGLTSTDLLFHIGAEEICSSSGTSDRFSRILKHILTQRSYYPLYPPHEDM 518

Query:    78 PVDMECWELHAQLPVTPHIMILPSDLRYFVK 108
              +D E +  +AQLPVTP + I+PS+LRYFVK
Sbjct:   519 AIDYENFYTYAQLPVTPDVFIVPSELRYFVK 549

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0005658 "alpha DNA polymerase:primase complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q14181	DPOA2_HUMAN	No assigned EC number	0.5054	0.8272	0.1521	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	110
pfam04042	189	pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsil	2e-17
COG5214	581	COG5214, POL12, DNA polymerase alpha-primase compl	5e-15

>gnl|CDD|217857 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon subunit B

 Score = 72.7 bits (179), Expect = 2e-17
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 18  PWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVEL 77
           P    I+GV + VTS D +  L R          +RL RL   +L+Q+  YPL  P+   
Sbjct: 102 PCRFSINGVEIVVTSGDNVKDLLRYSLKF-SSSEERLLRLVETILRQRHLYPL-APDTLG 159

Query: 78  PVDMECWELHA-QLPVTPHIMILPSDLRYFVK 108
           P   +  +     L   P + I+   L  FV 
Sbjct: 160 PYPYD--KDDPFVLDPLPDVFIVGDKLPPFVT 189

This family contains a number of DNA polymerase subunits. The B subunit of the DNA polymerase alpha plays an essential role at the initial stage of DNA replication in S. cerevisiae and is phosphorylated in a cell cycle-dependent manner. DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure. Length = 189

>gnl|CDD|227539 COG5214, POL12, DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]

 Score = 68.9 bits (168), Expect = 5e-15
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 16  PRPWVLDISGVVVGVTSVDVLMHLGREEF--AAAPEMTDRLSRLASHLLQQQCYYPLIPP 73
             P    I+ ++ G++S+D  + +  EE    +     DRL R++ HLL Q+ +YP+ P 
Sbjct: 423 GNPCEFFINEILFGISSLDTPLEISSEECFHDSLLSGGDRLGRISYHLLFQRTFYPVFPG 482

Query: 74  NVEL---PVDMECWELHAQLP-----VTPHIMILPSDLRYFVK 108
                  P  ++   +   LP       P I I+PS L++F +
Sbjct: 483 GSLEKCNPSSLDV--VSLSLPEFMSMTAPDIYIVPSKLKHFCR 523

Length = 581

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
KOG1625|consensus	600		100.0
COG5214	581	POL12 DNA polymerase alpha-primase complex, polyme	99.96
PF04042	209	DNA_pol_E_B: DNA polymerase alpha/epsilon subunit	99.88
cd07386	243	MPP_DNA_pol_II_small_archeal_C archeal DNA polymer	98.2
PTZ00235	291	DNA polymerase epsilon subunit B; Provisional	96.97
PRK04036	504	DNA polymerase II small subunit; Validated	96.71
cd07387	257	MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2	96.12
KOG3818|consensus	525		95.46
COG1311	481	HYS2 Archaeal DNA polymerase II, small subunit/DNA	92.29

>KOG1625|consensus

Probab=100.00  E-value=3.6e-35  Score=247.37  Aligned_cols=105  Identities=49%  Similarity=0.769  Sum_probs=96.8

Q ss_pred             hhhccCC-CC--CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcC--CCCchHHHHHHHhHhcccccccCCCCCCCccC
Q psy151            5 NKLLSED-SD--SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAA--PEMTDRLSRLASHLLQQQCYYPLIPPNVELPV   79 (110)
Q Consensus         5 ~~~~~~~-~n--~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~--~~~~drl~Rl~~hll~QrsfYPl~P~~~~~~l   79 (110)
                      ++.++.+ +|  |++|||.|+|||+.||+||+|+++||++||++++  .+++|||+|+.+|||+|||||||||| +++++
T Consensus       443 ~~~~~~~~~~l~~~~nPc~f~in~v~vg~ts~D~l~~Ls~eE~~~~~~~~~~dR~~Rls~HlL~QrsfYPL~PP-~dl~~  521 (600)
T KOG1625|consen  443 RNRLSDEKKNLKCVANPCLFSINGVEVGVTSTDTLLHLSSEEFFRNALQSNGDRLARLSSHLLTQRSFYPLFPP-EDLPV  521 (600)
T ss_pred             hhhccCcccceEEccCcceEEEccEEEEeecchHHHHhhhhHhhcCCCCcchHHHHHHHHHHhhcccccccCCc-hhcch
Confidence            4455555 45  9999999999999999999999999999999995  56789999999999999999999997 68999


Q ss_pred             ChhhHHhhcCCCCCCcEEEcCCCCCcccccC
Q psy151           80 DMECWELHAQLPVTPHIMILPSDLRYFVKAL  110 (110)
Q Consensus        80 D~~~~~~~~~~~~~PDilI~PS~l~~F~K~V  110 (110)
                      |++.+...++++.+|||||+||+||||+|+|
T Consensus       522 s~~~~~~~~~~~~~PdIlIlPSdLr~Fvk~V  552 (600)
T KOG1625|consen  522 SYSLLLKYAQIGSTPDILILPSDLRHFVKDV  552 (600)
T ss_pred             hhhhHHHHhccCCCCcEEEechhhHHHHHhc
Confidence            9999999999999999999999999999987

>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]

Probab=99.96  E-value=2.8e-31  Score=219.29  Aligned_cols=108  Identities=27%  Similarity=0.446  Sum_probs=99.8

Q ss_pred             hhhhhccCCCC--CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcC--CCCchHHHHHHHhHhcccccccCCCCCC---
Q psy151            3 SLNKLLSEDSD--SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAA--PEMTDRLSRLASHLLQQQCYYPLIPPNV---   75 (110)
Q Consensus         3 ~~~~~~~~~~n--~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~--~~~~drl~Rl~~hll~QrsfYPl~P~~~---   75 (110)
                      -.|+.+++|+|  |.+|||.|.|||+.||++|.|++.|+++||+.++  ..++||++|+..|+|+||+|||+||.+.   
T Consensus       408 ~~r~al~lp~nfkC~~NPc~F~INei~fg~Ss~Dt~l~~s~eE~f~~~l~s~g~rl~Ris~H~l~QR~fyPvFPg~~~~k  487 (581)
T COG5214         408 IGRNALRLPSNFKCTGNPCEFFINEILFGISSLDTPLEISSEECFHDSLLSGGDRLGRISYHLLFQRTFYPVFPGGSLEK  487 (581)
T ss_pred             cchhhhcCCccccccCCcceeEeeeeEEEeccCCchhhccHHHHhccccccccchHHHHHHHHHhhceeecccCCccccc
Confidence            45889999999  9999999999999999999999999999999985  5678999999999999999999999752   


Q ss_pred             --CccCChhhHHhhcCCC-CCCcEEEcCCCCCcccccC
Q psy151           76 --ELPVDMECWELHAQLP-VTPHIMILPSDLRYFVKAL  110 (110)
Q Consensus        76 --~~~lD~~~~~~~~~~~-~~PDilI~PS~l~~F~K~V  110 (110)
                        ...+|+.++...++++ ..|||+|+||+|++|+|+|
T Consensus       488 ~~ps~ldv~~l~l~Ef~~~t~PDI~IvpS~L~hF~r~V  525 (581)
T COG5214         488 CNPSSLDVVSLSLPEFMSMTAPDIYIVPSKLKHFCRDV  525 (581)
T ss_pred             cCccccceEEecchhhhccCCCcEEEehHHHHHHHHhc
Confidence              2679999999888887 9999999999999999987

>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast

Probab=99.88  E-value=7.5e-24  Score=157.12  Aligned_cols=93  Identities=40%  Similarity=0.560  Sum_probs=72.7

Q ss_pred             CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcCCCCchHHHHHHHhHhcccccccCCCCCCCccCChhhHHhhcCCCCC
Q psy151           14 SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVT   93 (110)
Q Consensus        14 ~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~~~~~drl~Rl~~hll~QrsfYPl~P~~~~~~lD~~~~~~~~~~~~~   93 (110)
                      |++|||+|++||+.||+++.|++++|+++|+.++....|++.|+++|||+||+|||++|.. ..++++.+.+. ..+..+
T Consensus       117 ~~sNP~~~~i~~~~i~~~s~d~~~~l~~~~~~~~~~~~~~~~~l~~~il~q~hl~P~~pd~-~~~~~~~~~~~-l~l~~~  194 (209)
T PF04042_consen  117 FVSNPCRISINGQEIGVTSGDILDDLRRYEISKSSSSEDRIERLMETILQQRHLYPLYPDT-LPPIPWSYDDP-LVLDPT  194 (209)
T ss_dssp             E--CSEEEEETTEEEEE-SSHHHHHHHHCCESHHHHHS-HHHHHHHHHHHCTBS-TTSSE---B-GGGGGCGC-TCGCS-
T ss_pred             EeCCCeEEEEeCCcEEEECCcHHHHHHhhccCCCcchhHHHHHHHHHHHHhhcccCCCCCC-ccccccCcCCC-cccCCC
Confidence            9999999999999999999999999999999877655799999999999999999999932 34566655443 456889


Q ss_pred             CcEEEcCCCCCcccc
Q psy151           94 PHIMILPSDLRYFVK  108 (110)
Q Consensus        94 PDilI~PS~l~~F~K  108 (110)
                      |||+|+|+++++|+|
T Consensus       195 Pdili~~~~~~~F~~  209 (209)
T PF04042_consen  195 PDILILPSDLPPFVK  209 (209)
T ss_dssp             -SEEEEEESCSSEE-
T ss_pred             CcEEEECCCCcCcCC
Confidence            999999999999987

In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.

>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain

Probab=98.20  E-value=2.3e-06  Score=65.09  Aligned_cols=85  Identities=19%  Similarity=0.151  Sum_probs=60.1

Q ss_pred             CCCCCcEEEECCeEEEeec----hHHHHHHhHHHhhcCCCCchHHHHHHHhHhcccccccCCCCCCCccCChhhHHhhcC
Q psy151           14 SKPRPWVLDISGVVVGVTS----VDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQ   89 (110)
Q Consensus        14 ~~~NP~~~~iN~~~igvts----~Dil~~L~~~ei~~~~~~~drl~Rl~~hll~QrsfYPl~P~~~~~~lD~~~~~~~~~   89 (110)
                      +++||+.+.+||..|-++.    .|++..+.       ....++..+++++++.||+++|++|....+.-+  + .....
T Consensus       118 ~l~Np~~~~~~g~~i~~~~G~~~~d~~~~~~-------~~~~~~~~~~~~~~l~~~hl~P~~~~~~~~~~~--~-~~~~~  187 (243)
T cd07386         118 FVSNPALVKIHGVDVLIYHGRSIDDVVKLIP-------GLSYDKPGKAMEELLKRRHLAPIYGGRTPIAPE--P-EDYLV  187 (243)
T ss_pred             EeCCCCEEEECCEEEEEECCCCHHHHHHhCC-------CCCcccHHHHHHHHHhhcccCCCCCCCEeeCCC--C-CCCEE
Confidence            8999999999999886665    55554432       112468899999999999999999974322111  1 22344


Q ss_pred             CCCCCcEEEcCCCCCcccc
Q psy151           90 LPVTPHIMILPSDLRYFVK  108 (110)
Q Consensus        90 ~~~~PDilI~PS~l~~F~K  108 (110)
                      +...||++|..-.-.++.+
T Consensus       188 ~~~~p~vii~Gh~h~~~~~  206 (243)
T cd07386         188 IDEVPDILHTGHVHVYGVG  206 (243)
T ss_pred             ecCCCCEEEECCCCchHhE
Confidence            6679999999877655543

The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera

>PTZ00235 DNA polymerase epsilon subunit B; Provisional

Probab=96.97  E-value=0.0043  Score=49.98  Aligned_cols=91  Identities=18%  Similarity=0.170  Sum_probs=68.4

Q ss_pred             CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcCC--CCchHHHHHHHhHhcccccccCCCCCCCccCChhhHHhhcCCC
Q psy151           14 SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAP--EMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLP   91 (110)
Q Consensus        14 ~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~~--~~~drl~Rl~~hll~QrsfYPl~P~~~~~~lD~~~~~~~~~~~   91 (110)
                      |.+|||.++.=+..|-+.=-|+...|.+.-+...+  ...|--..+++-|+.|.+..|+ |....+.-|+.|   .+.+-
T Consensus       157 ~aSNPcRI~y~sqEIVifRdDl~~~L~r~~~i~~~~~~~~d~~~~lvkTIldQ~HL~Pl-~~~~pI~W~yD~---aL~Ly  232 (291)
T PTZ00235        157 FATNPCRIRHLSKKMIFFRHDILNDLIWSSTINATNNERNNLQNILVSTIVGQSHIYPI-PHDNRILKRYSP---FLFLY  232 (291)
T ss_pred             EecCCcEEEecCceEEEEeHHHHHHHhhhccCCCCCccchhHHHHHHHhhhcccccCCC-ccCCcccccccc---ceecc
Confidence            99999999999999999999999999976532222  2234556899999999999999 444445444433   46678


Q ss_pred             CCCcEEEcCCC-CCcccc
Q psy151           92 VTPHIMILPSD-LRYFVK  108 (110)
Q Consensus        92 ~~PDilI~PS~-l~~F~K  108 (110)
                      ..||+||+.-. ..+|+|
T Consensus       233 PlPd~ivL~D~s~~~~~~  250 (291)
T PTZ00235        233 PLPHFICVCDNSCNSFIS  250 (291)
T ss_pred             CCCCEEEEecCCCCccce
Confidence            89999999755 566554

>PRK04036 DNA polymerase II small subunit; Validated

Probab=96.71  E-value=0.0022  Score=54.51  Aligned_cols=83  Identities=14%  Similarity=0.115  Sum_probs=58.0

Q ss_pred             CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcCCCCchHHHHHHHhHhcccccccCCCCCCCccCChhhHHhhcCCCCC
Q psy151           14 SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVT   93 (110)
Q Consensus        14 ~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~~~~~drl~Rl~~hll~QrsfYPl~P~~~~~~lD~~~~~~~~~~~~~   93 (110)
                      +++||+.+.++|..|-++.-|.+.++.+.- ..  ...++-..+.++++.||+..|.+|..  .++-.. ......+...
T Consensus       367 ~lsNP~~i~l~G~~iLl~HG~~idDl~~~i-~~--~s~~~p~~~m~~~l~~rHlaPt~p~~--~~~~p~-~~D~lvi~~~  440 (504)
T PRK04036        367 FVSNPALVNLHGVDVLIYHGRSIDDVISLI-PG--ASYEKPGKAMEELLKRRHLAPIYGGR--TPIAPE-KEDYLVIDEV  440 (504)
T ss_pred             EecCCeEEEECCEEEEEECCCCHHHHHhhc-cc--ccccCHHHHHHHHHHhcccCCCCCCC--EEeCcC-CCCCEEEecC
Confidence            899999999999999999866655554321 11  11245577899999999999999974  333332 2333455667


Q ss_pred             CcEEEcCCC
Q psy151           94 PHIMILPSD  102 (110)
Q Consensus        94 PDilI~PS~  102 (110)
                      ||++++.-.
T Consensus       441 Pdv~~~GH~  449 (504)
T PRK04036        441 PDIFHTGHV  449 (504)
T ss_pred             CCEEEeCCC
Confidence            999998644

>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain

Probab=96.12  E-value=0.014  Score=46.01  Aligned_cols=79  Identities=22%  Similarity=0.248  Sum_probs=55.5

Q ss_pred             CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcCCCCchHHHHHHHhHhcccccccCCCCCCC-ccC-ChhhHHhhcCCC
Q psy151           14 SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVE-LPV-DMECWELHAQLP   91 (110)
Q Consensus        14 ~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~~~~~drl~Rl~~hll~QrsfYPl~P~~~~-~~l-D~~~~~~~~~~~   91 (110)
                      +++||+.|+|||+.|-.||-..+.+|.+.-    + ..++++ +.+.+|+=|+.-|.+|-... +|. |-    ...-++
T Consensus       132 ~vtNP~~~~i~g~~vLgtsGqni~Di~ky~----~-~~~~l~-~me~~L~wrHlaPTaPDTL~~yP~~~~----Dpfvi~  201 (257)
T cd07387         132 LVTNPYEFSIDGVRVLGTSGQNVDDILKYS----S-LESRLD-ILERTLKWRHIAPTAPDTLWCYPFTDR----DPFILE  201 (257)
T ss_pred             EeCCCeEEEECCEEEEEECCCCHHHHHHhC----C-CCCHHH-HHHHHHHhcccCCCCCCccccccCCCC----Cceeec
Confidence            899999999999999999988888887542    1 134433 45556777999999996421 232 21    123456


Q ss_pred             CCCcEEEcCCC
Q psy151           92 VTPHIMILPSD  102 (110)
Q Consensus        92 ~~PDilI~PS~  102 (110)
                      ..|||+++.-.
T Consensus       202 ~~PhVyf~Gnq  212 (257)
T cd07387         202 ECPHVYFAGNQ  212 (257)
T ss_pred             CCCCEEEeCCC
Confidence            78999998643

PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily

>KOG3818|consensus

Probab=95.46  E-value=0.056  Score=46.29  Aligned_cols=102  Identities=14%  Similarity=0.134  Sum_probs=78.0

Q ss_pred             hhhhccCCCC--CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcCCCCchHHHHHHHhHhcccccccCCCCCCCccCCh
Q psy151            4 LNKLLSEDSD--SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDM   81 (110)
Q Consensus         4 ~~~~~~~~~n--~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~~~~~drl~Rl~~hll~QrsfYPl~P~~~~~~lD~   81 (110)
                      .+++....+|  |-+|||.+.----.|-|.-.|+.....++-+.-+....--=.++++-||.|.+.-|+-+....+--|+
T Consensus       384 ~~~i~kv~~~tvfasNPcRIqy~sQEIvVfR~DL~~kfcRn~l~Fp~~~~qipq~~vkTIL~QgHLsP~p~~~~PV~WD~  463 (525)
T KOG3818|consen  384 TKHISKVCKNTVFASNPCRIQYCSQEIVVFRDDLSGKFCRNSLNFPITVEQIPQHLVKTILDQGHLSPFPQHIRPVLWDF  463 (525)
T ss_pred             HHHHHhhcCCceeccCCeeeEeecceEEEEhHhhhhHHhhccccCCCcHHHHHHHHHHHHhhccccCCCccccCccccCc
Confidence            4667777887  99999999998888888999999999998775443333345679999999999999876655565566


Q ss_pred             hhHHhhcCCCCCCcEEEcCCCCCcccc
Q psy151           82 ECWELHAQLPVTPHIMILPSDLRYFVK  108 (110)
Q Consensus        82 ~~~~~~~~~~~~PDilI~PS~l~~F~K  108 (110)
                      +|.   +.+--.||.|++--....|..
T Consensus       464 D~a---Lsl~PlPdlmvl~Ds~~sf~~  487 (525)
T KOG3818|consen  464 DHA---LSLYPLPDLMVLADSFSSFFD  487 (525)
T ss_pred             ccc---eEeccCcceEEeecccccccc
Confidence            552   445568999999876666643

>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]

Probab=92.29  E-value=0.41  Score=41.16  Aligned_cols=81  Identities=15%  Similarity=0.128  Sum_probs=55.1

Q ss_pred             CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcCCCCchHHHHHHHhHhcccccccCCCCCCCccCChhhHHhhcCCCCC
Q psy151           14 SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVELPVDMECWELHAQLPVT   93 (110)
Q Consensus        14 ~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~~~~~drl~Rl~~hll~QrsfYPl~P~~~~~~lD~~~~~~~~~~~~~   93 (110)
                      +++||+.++++|+-|=+..-=-+.+|.+.  . ...+-|....+.+-+|.=|+.-|.||..  +++-... +.+.-+..-
T Consensus       345 ~v~NP~~~~l~G~~vL~~hG~sidDii~~--v-P~~~~~~~~~ame~lLk~rHlaPtygg~--~p~aP~~-kD~lVIeev  418 (481)
T COG1311         345 FVSNPALVSLHGVDVLIYHGRSIDDIIKL--V-PGADYDSPLKAMEELLKRRHLAPTYGGT--LPIAPET-KDYLVIEEV  418 (481)
T ss_pred             ecCCCcEEEECCEEEEEecCCCHHHHHhh--C-CCCCccchHHHHHHHHHhcccCCCCCCc--cccccCC-cCceeeccC
Confidence            99999999999987755543333333321  1 1123467777888889999999999984  4443333 445567788


Q ss_pred             CcEEEcC
Q psy151           94 PHIMILP  100 (110)
Q Consensus        94 PDilI~P  100 (110)
                      |||+++.
T Consensus       419 PDv~~~G  425 (481)
T COG1311         419 PDVFHTG  425 (481)
T ss_pred             CcEEEEc
Confidence            9999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	110
3flo_A	460	DNA polymerase alpha subunit B; protein-protein co	6e-19

>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc-binding motif, DNA replication; HET: DNA; 2.50A {Saccharomyces cerevisiae} Length = 460

 Score = 79.4 bits (195), Expect = 6e-19
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 31/124 (25%)

Query: 16  PRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNV 75
             P    I+ +  G ++VD    L             RL R++ H+LQQ+ YYP+ P ++
Sbjct: 274 ANPSSFQINEIYFGCSNVDTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSI 333

Query: 76  -------------ELPVDMECWELHAQLP------------------VTPHIMILPSDLR 104
                        E        E   +                     +P IMI+PS+L+
Sbjct: 334 RTRIKPKDVSTKKETNDMESKEEKVYEHISGADLDVSYLGLTEFVGGFSPDIMIIPSELQ 393

Query: 105 YFVK 108
           +F +
Sbjct: 394 HFAR 397

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
3flo_A	460	DNA polymerase alpha subunit B; protein-protein co	99.97
3e0j_A	476	DNA polymerase subunit delta-2; DNA polymerase del	97.01

>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.4e-32  Score=225.58  Aligned_cols=104  Identities=29%  Similarity=0.510  Sum_probs=91.0

Q ss_pred             hhhccCCC-C--CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcCC--CCchHHHHHHHhHhcccccccCCCCCCC---
Q psy151            5 NKLLSEDS-D--SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAP--EMTDRLSRLASHLLQQQCYYPLIPPNVE---   76 (110)
Q Consensus         5 ~~~~~~~~-n--~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~~--~~~drl~Rl~~hll~QrsfYPl~P~~~~---   76 (110)
                      +|.+++++ |  |++|||+|+|||+.||+||.|+++||+  |+.+++  .++||++|+|+|||+|||||||||++.+   
T Consensus       260 ~k~l~l~k~nv~~~sNPc~~~in~v~igvss~Dil~~L~--e~~~~~~~~~~dr~~Rl~~hlL~Qr~~yPL~P~~~~~~~  337 (460)
T 3flo_A          260 RKALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLK--EVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRTRI  337 (460)
T ss_dssp             TTTTTCCTTTEEECCBSEEEEETTEEEEECCSCHHHHCC--CEEECHHHHHSCHHHHHHHHHHHHTBSCCCSSCCEEC--
T ss_pred             hhhhcCCcccEEEeCCCEEEEECCEEEEEEcHHHHHHHH--HhhcCCCCccccHHHHHHHHHhhcCcccCcCCCcccccc
Confidence            46678888 8  999999999999999999999999997  455542  4579999999999999999999999843   


Q ss_pred             ---------------------------ccCChhhHHhhcC-CCCCCcEEEcCCCCCcccccC
Q psy151           77 ---------------------------LPVDMECWELHAQ-LPVTPHIMILPSDLRYFVKAL  110 (110)
Q Consensus        77 ---------------------------~~lD~~~~~~~~~-~~~~PDilI~PS~l~~F~K~V  110 (110)
                                                 ++||++|++..++ ++++|||||+||+|++|+|+|
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Ldv~yl~l~e~~~~~~PDilI~PS~l~~F~kvv  399 (460)
T 3flo_A          338 KPKDVSTKKETNDMESKEEKVYEHISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVV  399 (460)
T ss_dssp             -----------------------CCEECCBCGGGGGGGBCGGGCCCSEEECCCSSCCEEEEE
T ss_pred             cccccccccccccccccccccccccCCcccceeccchhhcccCCCCCEEEcCCCCcCceEEe
Confidence                                       3589999987666 389999999999999999986

>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}

Probab=97.01  E-value=0.0013  Score=54.83  Aligned_cols=80  Identities=23%  Similarity=0.250  Sum_probs=58.2

Q ss_pred             CCC--CCCCCcEEEECCeEEEeechHHHHHHhHHHhhcCCCCchHHHHHHHhHhcccccccCCCCCCC-ccC-ChhhHHh
Q psy151           11 DSD--SKPRPWVLDISGVVVGVTSVDVLMHLGREEFAAAPEMTDRLSRLASHLLQQQCYYPLIPPNVE-LPV-DMECWEL   86 (110)
Q Consensus        11 ~~n--~~~NP~~~~iN~~~igvts~Dil~~L~~~ei~~~~~~~drl~Rl~~hll~QrsfYPl~P~~~~-~~l-D~~~~~~   86 (110)
                      +.+  +++||+.+.|+|+.|=.||-..+.+|.+.-     ...++++ +.+.+|+-|+..|.+|-.-. +|. |-    .
T Consensus       329 ~~~~~~vtNP~~~~i~G~~~LgtsGqnidDi~ky~-----~~~~~l~-~me~~LkwrHlAPTaPdTl~~yP~~~~----D  398 (476)
T 3e0j_A          329 YSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYS-----SMEDHLE-ILEWTLRVRHISPTAPDTLGCYPFYKT----D  398 (476)
T ss_dssp             STTEEECCSSEEEEETTEEEEECSSHHHHHHHHHS-----CCCCHHH-HHHHHHHBTCSCTTSCCC------CCS----C
T ss_pred             cCccEEeCCCeEEEECCEEEEEECCCCHHHHHhcC-----CCCCHHH-HHHHHHHHhccCCCCCCceeeccCCCC----C
Confidence            355  899999999999999888887777776542     1246776 88999999999999997421 232 22    2


Q ss_pred             hcCCCCCCcEEEcC
Q psy151           87 HAQLPVTPHIMILP  100 (110)
Q Consensus        87 ~~~~~~~PDilI~P  100 (110)
                      ..-++..|||+++.
T Consensus       399 pfVi~~~PhVyf~G  412 (476)
T 3e0j_A          399 PFIFPECPHVYFCG  412 (476)
T ss_dssp             TTSCSSCCSEEEEE
T ss_pred             ceeecCCCcEEEeC
Confidence            35568899999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00