Psyllid ID: psy3233

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MSIEKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHEcHHHccccccHHHHHHcEEEcccccccHHHHHHHHHHHHHHHHHHHEEHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcc
Coil and Loop (DISEMBL)
MSIEKLendvldgkyseDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR
Flexible Loop (DISEMBL)
msieklendvldgkysEDYWVQRYIIqnesnvpsfLEHVKDKILRTGKYLNVIRKCkasvqskclldKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSlltllmqdYDLVNRIR
Low Complexity Region (SEG)
MSIEKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR
Disordered region (IsUnstruct)
*********VLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDK*********Y***TDSALIRMIDEAYHFASSSLLTLLMQDYDLV****
Disordered Region (DISOPRED)
********DVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQ***********AAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR
Disordered Region (DISEMBL)
MSIEKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR
Disordered Region (DISPRO)
*SIEKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQ*******Q****AEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLV*R**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSIEKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
Q9XYP7	852	Gamma-tubulin complex com	no	N/A	0.879	0.119	0.385	3e-14
Q5R5J6	902	Gamma-tubulin complex com	yes	N/A	0.793	0.101	0.392	3e-12
Q9BSJ2	902	Gamma-tubulin complex com	yes	N/A	0.793	0.101	0.392	3e-12
Q921G8	905	Gamma-tubulin complex com	yes	N/A	0.844	0.108	0.371	7e-12
Q9Y705	784	Spindle pole body compone	yes	N/A	0.620	0.091	0.328	5e-06
Q95ZG3	1335	Spindle pole body compone	yes	N/A	0.948	0.082	0.253	6e-06

>sp|Q9XYP7|GCP2_DROME Gamma-tubulin complex component 2 homolog OS=Drosophila melanogaster GN=Grip84 PE=1 SV=2

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 12/114 (10%)

Query: 4   EKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSK 63
           E +  D L   YS+DYW +RY +++E  +PSFL    DKILRTGKYLNVIR+C   V   
Sbjct: 401 EVIHRDELPEHYSDDYWERRYTLRDE-QIPSFLAKYSDKILRTGKYLNVIRQCGKRVMP- 458

Query: 64  CLLDKQRQRAAEMKY-MESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
                      EM    + T    + +I++AY+FA+  LL +L+ + DL+  ++
Sbjct: 459 ---------TQEMNLEFDPTSERHVSVINDAYYFAARMLLDVLLTENDLMGHLQ 503

Drosophila melanogaster (taxid: 7227)

>sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 10/102 (9%)

Query: 15  YSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQRAA 74
           Y++ YW QRY I  +  +PSFL+ + DKIL TGKYLNV+R+C   V            A 
Sbjct: 423 YNDKYWDQRYTIVQQ-QIPSFLQKMADKILSTGKYLNVVRECGHDVTCPV--------AK 473

Query: 75  EMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
           E+ Y    + A +  I++A+++AS  LL  LM++ +LV  +R
Sbjct: 474 EIIYT-LKERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLR 514

Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.

Pongo abelii (taxid: 9601)

>sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 10/102 (9%)

Query: 15  YSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQRAA 74
           Y++ YW QRY I  +  +PSFL+ + DKIL TGKYLNV+R+C   V            A 
Sbjct: 423 YNDKYWDQRYTIVQQ-QIPSFLQKMADKILSTGKYLNVVRECGHDVTCPV--------AK 473

Query: 75  EMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
           E+ Y    + A +  I++A+++AS  LL  LM++ +LV  +R
Sbjct: 474 EIIYTLK-ERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLR 514

Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.

Homo sapiens (taxid: 9606)

>sp|Q921G8|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=2

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 15/113 (13%)

Query: 4   EKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSK 63
           EK++ D     Y++ YW QRY +  +  +PSFL+ V  KIL TGKYLNV+R+C   V   
Sbjct: 417 EKIQED-----YNDKYWDQRYTVLPQ-QIPSFLQKVAGKILSTGKYLNVVRECGHDVTCP 470

Query: 64  CLLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
                    A E+ Y    + A +  I++A+++AS  LL  LM++ +LV  +R
Sbjct: 471 V--------AKEIIYTLK-ERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLR 514

Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.

Mus musculus (taxid: 10090)

>sp|Q9Y705|ALP4_SCHPO Spindle pole body component alp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp4 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 11  LDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQR 70
           LD  Y+++YW +RY+I+ E  VP  L  +++K+L  GKYLNV+ +C+  V +   L+ + 
Sbjct: 323 LDEDYTDEYWEKRYVIR-EDQVPPQLLDLQNKVLFAGKYLNVVLECRKGVNNLASLNAKD 381

Query: 71  QRAAEMKYMESTD 83
               ++ +  + D
Sbjct: 382 DTQNQLLWPSTFD 394

Component of the gamma tubule complex that is required for the regulation of both interphase microtubules and mitotic bipolar spindles. Required for correct septation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 40/150 (26%)

Query: 6   LENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCL 65
           L+ D ++  +++ YW QRY I+ +  +P +L+    KIL TGKYLNV+R+C  S+  +  
Sbjct: 632 LKRDNINRDFNDLYWEQRYQIR-QDQIPKYLQSHALKILTTGKYLNVVRECNQSISQQQQ 690

Query: 66  LDKQ------------------------RQRAAEMKYMESTDSALIRM------------ 89
            +K                           +  + + + ST +++I              
Sbjct: 691 HNKSDNNNNNNNNVKLNSQQQLLLLKLNTTQQQQQQQLSSTSASMIPTTIIEYSKNENVY 750

Query: 90  ---IDEAYHFASSSLLTLLMQDYDLVNRIR 116
              I++AY +AS  LL LL+ +  L++R++
Sbjct: 751 IDKIEKAYDYASGILLNLLINERHLISRLK 780

May be involved in microtubule nucleation.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
157137985	852	gamma-tubulin complex component 2 (gcp-2	0.827	0.112	0.449	6e-16
157137987	817	gamma-tubulin complex component 2 (gcp-2	0.827	0.117	0.449	6e-16
195448078	943	GK25106 [Drosophila willistoni] gi|19416	0.887	0.109	0.389	4e-14
195398753	1024	GJ15836 [Drosophila virilis] gi|19415040	0.887	0.100	0.371	2e-13
321459519	869	hypothetical protein DAPPUDRAFT_327924 [	0.793	0.105	0.431	2e-13
125982903	935	GA17771 [Drosophila pseudoobscura pseudo	0.827	0.102	0.396	4e-13
194762974	927	GF20484 [Drosophila ananassae] gi|190629	0.887	0.111	0.371	1e-12
281361111	833	gamma-tubulin ring protein 84, isoform D	0.879	0.122	0.385	1e-12
24643286	926	gamma-tubulin ring protein 84, isoform A	0.879	0.110	0.385	1e-12
60677909	833	RE12810p [Drosophila melanogaster]	0.879	0.122	0.385	1e-12

>gi|157137985|ref|XP_001664106.1| gamma-tubulin complex component 2 (gcp-2) [Aedes aegypti] gi|108869595|gb|EAT33820.1| AAEL013903-PB [Aedes aegypti]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 68/109 (62%), Gaps = 13/109 (11%)

Query: 7   ENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLL 66
           END++D      YW ++YII+ +  VP FL    D ILRTGKYLNVIR+C +SV      
Sbjct: 412 ENDMMD------YWEKQYIIRTDK-VPCFLNEYADIILRTGKYLNVIRECGSSV------ 458

Query: 67  DKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRI 115
           D Q+     +KY  S     I+ I++AY++ASSSLL L+M  Y+L+ R+
Sbjct: 459 DYQQNVCVSLKYTHSDHQTYIKAIEDAYNYASSSLLNLIMDKYNLMGRL 507

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157137987|ref|XP_001664107.1| gamma-tubulin complex component 2 (gcp-2) [Aedes aegypti] gi|108869596|gb|EAT33821.1| AAEL013903-PA [Aedes aegypti]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 68/109 (62%), Gaps = 13/109 (11%)

Query: 7   ENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLL 66
           END++D      YW ++YII+ +  VP FL    D ILRTGKYLNVIR+C +SV      
Sbjct: 412 ENDMMD------YWEKQYIIRTDK-VPCFLNEYADIILRTGKYLNVIRECGSSV------ 458

Query: 67  DKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRI 115
           D Q+     +KY  S     I+ I++AY++ASSSLL L+M  Y+L+ R+
Sbjct: 459 DYQQNVCVSLKYTHSDHQTYIKAIEDAYNYASSSLLNLIMDKYNLMGRL 507

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195448078|ref|XP_002071500.1| GK25106 [Drosophila willistoni] gi|194167585|gb|EDW82486.1| GK25106 [Drosophila willistoni]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 69/113 (61%), Gaps = 10/113 (8%)

Query: 4   EKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSK 63
           E + +D L   YS+DYW +RY ++++  +PSFLE   DKILRTGKYLNVIR+C   V + 
Sbjct: 479 EVVHHDELPEHYSDDYWEKRYTVRDD-RIPSFLEKYADKILRTGKYLNVIRQCGKRVMAI 537

Query: 64  CLLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
             +D Q            T+   + +I++AY+FA+  LL +L+ + DL+  ++
Sbjct: 538 QPMDLQ---------FNPTNEQHVHVINDAYYFAARMLLDVLLTENDLMGHLQ 581

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195398753|ref|XP_002057985.1| GJ15836 [Drosophila virilis] gi|194150409|gb|EDW66093.1| GJ15836 [Drosophila virilis]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 10/113 (8%)

Query: 4   EKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSK 63
           E +  D L   YS+DYW +RY ++ E  +P+FLE   DKILRTGKYLNVIR+C   V   
Sbjct: 568 EVIHKDELPEHYSDDYWEKRYTVRTEC-IPTFLEKYADKILRTGKYLNVIRQCGKRVMPT 626

Query: 64  CLLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
             ++ +    +E+          + +I++AY+FA+  LL +L+ + DL+  ++
Sbjct: 627 QQMNLEFDPTSELH---------VHVINDAYYFAARMLLDVLLTENDLMGHLQ 670

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321459519|gb|EFX70571.1| hypothetical protein DAPPUDRAFT_327924 [Daphnia pulex]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 10/102 (9%)

Query: 15  YSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQRAA 74
           YS+DYW +RY ++ +  VPSFL  + D+ILRTGKYLNVI++C   V+          R  
Sbjct: 420 YSDDYWEKRYTLRRD-RVPSFLLPLTDQILRTGKYLNVIKQCGMKVKPP--------RID 470

Query: 75  EMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
           ++ Y     S     I++AY +AS +LL +LMQDYDL+ R++
Sbjct: 471 DLVYTLD-GSGYKEAIEKAYSYASETLLHVLMQDYDLLGRLK 511

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125982903|ref|XP_001355217.1| GA17771 [Drosophila pseudoobscura pseudoobscura] gi|54643530|gb|EAL32274.1| GA17771 [Drosophila pseudoobscura pseudoobscura]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 10/106 (9%)

Query: 11  LDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQR 70
           L   YS+DYW +RY ++ +  +PSFLE   DKILRTGKYLNVIR+C   V     ++ Q 
Sbjct: 486 LPEHYSDDYWEKRYTVRRD-RIPSFLEKYSDKILRTGKYLNVIRQCGKRVMPTQQMELQ- 543

Query: 71  QRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
                   ++ TD   + +I++AY+FA+  LL +L+ + DL+  ++
Sbjct: 544 --------LDPTDERHVYVINDAYYFAARMLLDVLLTENDLMGHLQ 581

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194762974|ref|XP_001963609.1| GF20484 [Drosophila ananassae] gi|190629268|gb|EDV44685.1| GF20484 [Drosophila ananassae]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 69/113 (61%), Gaps = 10/113 (8%)

Query: 4   EKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSK 63
           E +  D L   YS+DYW +RY ++ +  +P+FLE   DKILRTGKYLNVIR+C   V   
Sbjct: 498 EVIHRDELPEHYSDDYWEKRYTVRRD-RIPTFLEKYSDKILRTGKYLNVIRQCGKRVMPT 556

Query: 64  CLLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
                   +  E+++  S++   + +I++AY+FA+  LL +L+ + DL+  ++
Sbjct: 557 --------QQMELEFDPSSERH-VTVINDAYYFAARMLLDVLLTENDLMGHLQ 600

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281361111|ref|NP_001162797.1| gamma-tubulin ring protein 84, isoform D [Drosophila melanogaster] gi|272506171|gb|ACZ95331.1| gamma-tubulin ring protein 84, isoform D [Drosophila melanogaster]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 12/114 (10%)

Query: 4   EKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSK 63
           E +  D L   YS+DYW +RY +++E  +PSFL    DKILRTGKYLNVIR+C   V   
Sbjct: 475 EVIHRDELPEHYSDDYWERRYTLRDE-QIPSFLAKYSDKILRTGKYLNVIRQCGKRVMP- 532

Query: 64  CLLDKQRQRAAEMKY-MESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
                      EM    + T    + +I++AY+FA+  LL +L+ + DL+  ++
Sbjct: 533 ---------TQEMNLEFDPTSERHVSVINDAYYFAARMLLDVLLTENDLMGHLQ 577

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24643286|ref|NP_728264.1| gamma-tubulin ring protein 84, isoform A [Drosophila melanogaster] gi|22832580|gb|AAN09501.1| gamma-tubulin ring protein 84, isoform A [Drosophila melanogaster]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 12/114 (10%)

Query: 4   EKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSK 63
           E +  D L   YS+DYW +RY +++E  +PSFL    DKILRTGKYLNVIR+C   V   
Sbjct: 475 EVIHRDELPEHYSDDYWERRYTLRDE-QIPSFLAKYSDKILRTGKYLNVIRQCGKRVMP- 532

Query: 64  CLLDKQRQRAAEMKY-MESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
                      EM    + T    + +I++AY+FA+  LL +L+ + DL+  ++
Sbjct: 533 ---------TQEMNLEFDPTSERHVSVINDAYYFAARMLLDVLLTENDLMGHLQ 577

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|60677909|gb|AAX33461.1| RE12810p [Drosophila melanogaster]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 12/114 (10%)

Query: 4   EKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSK 63
           E +  D L   YS+DYW +RY +++E  +PSFL    DKILRTGKYLNVIR+C   V   
Sbjct: 475 EVIHRDELPEHYSDDYWERRYTLRDE-QIPSFLAKYSDKILRTGKYLNVIRQCGKRVMP- 532

Query: 64  CLLDKQRQRAAEMKY-MESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
                      EM    + T    + +I++AY+FA+  LL +L+ + DL+  ++
Sbjct: 533 ---------TQEMNLEFDPTSERHVSVINDAYYFAARMLLDVLLTENDLMGHLQ 577

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
FB|FBgn0026430	852	Grip84 "gamma-tubulin ring pro	0.887	0.120	0.380	4.6e-14
ZFIN|ZDB-GENE-031118-150	882	tubgcp2 "tubulin, gamma comple	0.879	0.115	0.392	4.8e-14
UNIPROTKB|Q5ZKY5	895	TUBGCP2 "Uncharacterized prote	0.879	0.113	0.375	5.8e-13
UNIPROTKB|B3KTU7	495	TUBGCP2 "Gamma-tubulin complex	0.879	0.206	0.375	1.3e-12
UNIPROTKB|E1BZL5	906	TUBGCP2 "Uncharacterized prote	0.844	0.108	0.379	2e-12
UNIPROTKB|E1C2Y1	906	TUBGCP2 "Uncharacterized prote	0.844	0.108	0.379	2e-12
UNIPROTKB|F2Z2B9	721	TUBGCP2 "Gamma-tubulin complex	0.879	0.141	0.375	2.4e-12
UNIPROTKB|Q9BSJ2	902	TUBGCP2 "Gamma-tubulin complex	0.879	0.113	0.375	3.3e-12
UNIPROTKB|J9P5U2	704	TUBGCP2 "Uncharacterized prote	0.870	0.143	0.353	1.3e-11
MGI|MGI:1921487	905	Tubgcp2 "tubulin, gamma comple	0.879	0.112	0.366	1.4e-11

FB|FBgn0026430 Grip84 "gamma-tubulin ring protein 84" [Drosophila melanogaster (taxid:7227)]

 Score = 193 (73.0 bits), Expect = 4.6e-14, P = 4.6e-14
 Identities = 43/113 (38%), Positives = 69/113 (61%)

Query:     4 EKLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSK 63
             E +  D L   YS+DYW +RY +++E  +PSFL    DKILRTGKYLNVIR+C      K
Sbjct:   401 EVIHRDELPEHYSDDYWERRYTLRDEQ-IPSFLAKYSDKILRTGKYLNVIRQC-----GK 454

Query:    64 CLLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
              ++  Q      +++ + T    + +I++AY+FA+  LL +L+ + DL+  ++
Sbjct:   455 RVMPTQEMN---LEF-DPTSERHVSVINDAYYFAARMLLDVLLTENDLMGHLQ 503

GO:0015631 "tubulin binding" evidence=NAS

GO:0072686 "mitotic spindle" evidence=IDA

GO:0008275 "gamma-tubulin small complex" evidence=NAS;IDA;IPI

GO:0005813 "centrosome" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=IDA

GO:0008017 "microtubule binding" evidence=ISS

GO:0007017 "microtubule-based process" evidence=ISS

GO:0005875 "microtubule associated complex" evidence=ISS

GO:0051011 "microtubule minus-end binding" evidence=IDA

GO:0043015 "gamma-tubulin binding" evidence=IDA

GO:0000922 "spindle pole" evidence=IEA

GO:0051225 "spindle assembly" evidence=IMP

GO:0030953 "astral microtubule organization" evidence=IMP

GO:0007126 "meiosis" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0051297 "centrosome organization" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

ZFIN|ZDB-GENE-031118-150 tubgcp2 "tubulin, gamma complex associated protein 2" [Danio rerio (taxid:7955)]

 Score = 193 (73.0 bits), Expect = 4.8e-14, P = 4.8e-14
 Identities = 44/112 (39%), Positives = 68/112 (60%)

Query:     5 KLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKC 64
             +L+ + +   Y++ YW QRY I  +  +PSFL+ + DKIL TGKYLNV+R+C   V   C
Sbjct:   413 ELQKEKIQEDYNDKYWDQRYTIV-QHRIPSFLQKMADKILNTGKYLNVVRECGRDVT--C 469

Query:    65 LLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
                     A E+ Y    + A +  I++AY++AS  LL  LM++ +LV+R+R
Sbjct:   470 ------PDAKEVLYTLK-ERAYVEQIEKAYYYASKVLLDFLMEEKELVSRLR 514

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5ZKY5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 183 (69.5 bits), Expect = 5.8e-13, P = 5.8e-13
 Identities = 42/112 (37%), Positives = 67/112 (59%)

Query:     5 KLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKC 64
             +L+ + +   Y++ YW QRY +  +  +PSFL+ + DKIL TGKYLNV+R+C   V   C
Sbjct:   413 ELQKEKIQEDYNDKYWDQRYTVVQQQ-IPSFLQKMADKILSTGKYLNVVRECGRDVT--C 469

Query:    65 LLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
              + K      E+ Y    + A +  I++AY++AS  LL  LM++ +LV  +R
Sbjct:   470 PVAK------EVIYTLK-ERAYVEQIEKAYNYASKVLLDFLMEEKELVAHLR 514

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

UNIPROTKB|B3KTU7 TUBGCP2 "Gamma-tubulin complex component 2" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 42/112 (37%), Positives = 66/112 (58%)

Query:     5 KLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKC 64
             +L  + +   Y++ YW QRY I  +  +PSFL+ + DKIL TGKYLNV+R+C   V   C
Sbjct:     6 ELRKERIQEDYNDKYWDQRYTIVQQQ-IPSFLQKMADKILSTGKYLNVVRECGHDVT--C 62

Query:    65 LLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
              + K      E+ Y    + A +  I++A+++AS  LL  LM++ +LV  +R
Sbjct:    63 PVAK------EIIYTLK-ERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLR 107

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|E1BZL5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 41/108 (37%), Positives = 65/108 (60%)

Query:     5 KLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKC 64
             +L+ + +   Y++ YW QRY +  +  +PSFL+ + DKIL TGKYLNV+R+C   V   C
Sbjct:   413 ELQKEKIQEDYNDKYWDQRYTVVQQQ-IPSFLQKMADKILSTGKYLNVVRECGRDVT--C 469

Query:    65 LLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLV 112
              + K      E+ Y    + A +  I++AY++AS  LL  LM++ +LV
Sbjct:   470 PVAK------EVIYTLK-ERAYVEQIEKAYNYASKVLLDFLMEEKELV 510

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

UNIPROTKB|E1C2Y1 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 41/108 (37%), Positives = 65/108 (60%)

Query:     5 KLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKC 64
             +L+ + +   Y++ YW QRY +  +  +PSFL+ + DKIL TGKYLNV+R+C   V   C
Sbjct:   413 ELQKEKIQEDYNDKYWDQRYTVVQQQ-IPSFLQKMADKILSTGKYLNVVRECGRDVT--C 469

Query:    65 LLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLV 112
              + K      E+ Y    + A +  I++AY++AS  LL  LM++ +LV
Sbjct:   470 PVAK------EVIYTLK-ERAYVEQIEKAYNYASKVLLDFLMEEKELV 510

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

UNIPROTKB|F2Z2B9 TUBGCP2 "Gamma-tubulin complex component 2" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 42/112 (37%), Positives = 66/112 (58%)

Query:     5 KLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKC 64
             +L  + +   Y++ YW QRY I  +  +PSFL+ + DKIL TGKYLNV+R+C   V   C
Sbjct:   413 ELRKERIQEDYNDKYWDQRYTIVQQQ-IPSFLQKMADKILSTGKYLNVVRECGHDVT--C 469

Query:    65 LLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
              + K      E+ Y    + A +  I++A+++AS  LL  LM++ +LV  +R
Sbjct:   470 PVAK------EIIYTLK-ERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLR 514

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

UNIPROTKB|Q9BSJ2 TUBGCP2 "Gamma-tubulin complex component 2" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 42/112 (37%), Positives = 66/112 (58%)

Query:     5 KLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKC 64
             +L  + +   Y++ YW QRY I  +  +PSFL+ + DKIL TGKYLNV+R+C   V   C
Sbjct:   413 ELRKERIQEDYNDKYWDQRYTIVQQQ-IPSFLQKMADKILSTGKYLNVVRECGHDVT--C 469

Query:    65 LLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
              + K      E+ Y    + A +  I++A+++AS  LL  LM++ +LV  +R
Sbjct:   470 PVAK------EIIYTLK-ERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLR 514

GO:0000922 "spindle pole" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005813 "centrosome" evidence=IDA

GO:0005815 "microtubule organizing center" evidence=TAS

GO:0005881 "cytoplasmic microtubule" evidence=TAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0007020 "microtubule nucleation" evidence=TAS

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|J9P5U2 TUBGCP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 169 (64.5 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 40/113 (35%), Positives = 67/113 (59%)

Query:     5 KLENDVLDGKYSEDYWVQRY-IIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSK 63
             +L  + +   Y++ YW QRY ++Q +  +PSFL+ +  K+L TGKYLNV+R+C   V   
Sbjct:   212 ELRKEKIQEDYNDKYWDQRYTVVQRQ--IPSFLQKMAGKVLSTGKYLNVVRECGHDVT-- 267

Query:    64 CLLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
             C + K      E+ Y    + A +  I++A+++AS  LL  LM++ +LV  +R
Sbjct:   268 CPVAK------EIIYTLK-ERAYVEQIEKAFNYASKVLLAFLMEEKELVAHLR 313

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

MGI|MGI:1921487 Tubgcp2 "tubulin, gamma complex associated protein 2" [Mus musculus (taxid:10090)]

 Score = 170 (64.9 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 41/112 (36%), Positives = 65/112 (58%)

Query:     5 KLENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKC 64
             +L  + +   Y++ YW QRY +  +  +PSFL+ V  KIL TGKYLNV+R+C   V   C
Sbjct:   413 ELRKEKIQEDYNDKYWDQRYTVLPQQ-IPSFLQKVAGKILSTGKYLNVVRECGHDVT--C 469

Query:    65 LLDKQRQRAAEMKYMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
              + K      E+ Y    + A +  I++A+++AS  LL  LM++ +LV  +R
Sbjct:   470 PVAK------EIIYTLK-ERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLR 514

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	116
pfam04130	528	pfam04130, Spc97_Spc98, Spc97 / Spc98 family	1e-17

>gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family

 Score = 76.8 bits (189), Expect = 1e-17
 Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 7/120 (5%)

Query: 3   IEKLENDVLDGKYSEDYWVQRYIIQNESNVPSFL-EHVKDKILRTGKYLNVIRKCKASVQ 61
           I++ E++ +    S++YW +RY +  E  +PSFL + +  KIL  GK LN +R+C  S  
Sbjct: 193 IKENESEEVLSDDSDEYWEERYTL-REDMLPSFLPKELARKILEIGKSLNFLRECCKSHP 251

Query: 62  SKCLLDKQRQRAAEMKYMES-----TDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
                         +  +         SAL  +ID AY  AS SLL LL+++YDL+  ++
Sbjct: 252 LAKDQSLALSLREALVSLLKLFSSLDTSALELLIDSAYLEASKSLLDLLLEEYDLLGHLQ 311

The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2. Length = 528

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
KOG2001|consensus	734		99.95
KOG2000|consensus	879		99.64
PF04130	542	Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR00	99.52

>KOG2001|consensus

Probab=99.95  E-value=4e-28  Score=202.77  Aligned_cols=103  Identities=41%  Similarity=0.702  Sum_probs=91.3

Q ss_pred             cccccCCCCCCHHhhhccceeccCCCCChhhHHHHHHHHhhhHHHHHHHHhhCCCcchhhhhHHhhhhhhccccC-Cchh
Q psy3233           6 LENDVLDGKYSEDYWVQRYIIQNESNVPSFLEHVKDKILRTGKYLNVIRKCKASVQSKCLLDKQRQRAAEMKYME-STDS   84 (116)
Q Consensus         6 ~~k~~l~~~~~d~~W~~rY~lr~~~~iP~FL~~~a~kIL~TGK~lN~lR~c~~~~~~~~~~~~~~~~~~~l~~~~-~~~~   84 (116)
                      ++|+.+++||+|+||++||+||++ .||.||.+.|+|||.||||+||+|+||+.++.|...      . .+.|.. ..+.
T Consensus       301 ~~k~~l~ed~~d~YW~~RY~ir~d-qiP~fL~~~adkIL~tGKYLNVvReC~~~v~~p~~~------n-~~~~~~~~~e~  372 (734)
T KOG2001|consen  301 ITKEDLPEDYTDKYWDQRYTIRKD-QIPGFLLSEADKILRTGKYLNVVRECGKIVTIPQSS------N-EINDPADLMES  372 (734)
T ss_pred             hhhhcCchhhhHHHHHHhheechh-hcchHHHHHHHHHHHhhhHHHHHHHhCccCCCCcch------h-hhccccccchh
Confidence            788999999999999999999999 999999999999999999999999999999877321      0 233320 2369


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccchhccC
Q psy3233          85 ALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR  116 (116)
Q Consensus        85 ~~~~~Id~ay~~As~~Ll~lL~~~~~L~~hL~  116 (116)
                      .++..|+.||.+||..||++|+++|+|.+|||
T Consensus       373 ~~~e~I~~ay~~A~~~lL~ll~~e~dL~~hLr  404 (734)
T KOG2001|consen  373 NHEEYIKKAYEFANEILLKLLFEEYDLVGHLR  404 (734)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            99999999999999999999999999999996

>KOG2000|consensus

Probab=99.64  E-value=9e-17  Score=139.22  Aligned_cols=100  Identities=24%  Similarity=0.430  Sum_probs=84.6

Q ss_pred             CCCHHhhhccceeccCCCCChhhHH-HHHHHHhhhHHHHHHHHhhCCCcchhhhhHH---h-hhhhhccccCCchhHHHH
Q psy3233          14 KYSEDYWVQRYIIQNESNVPSFLEH-VKDKILRTGKYLNVIRKCKASVQSKCLLDKQ---R-QRAAEMKYMESTDSALIR   88 (116)
Q Consensus        14 ~~~d~~W~~rY~lr~~~~iP~FL~~-~a~kIL~TGK~lN~lR~c~~~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~   88 (116)
                      .-.|++|+++|.++.. |||.||.. +|.|||+|||++||+|.||....|....+..   . .....+.|+  .+..++.
T Consensus       416 ~~~d~lw~~~~~l~~~-~lP~Fi~~~~a~kI~l~GKsinfL~~~c~e~~w~~e~~~~~~~~~s~~~~l~~~--~~~~l~~  492 (879)
T KOG2000|consen  416 VKDDRLWHDGYKLRYE-MLPSFIPMELAQKILLIGKSINFLRDCCNEQTWSDEIDAKASVEESSTRDLEYA--SDVGLLG  492 (879)
T ss_pred             cccccccccccccchh-hcccccCHHHHHHHHHhhhHHHHHHHhccccccccchhHHHHHhhhhhhhhccC--CChhHHH
Confidence            3448999999999999 99999999 9999999999999999999987765443321   0 112266776  6999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccccchhccC
Q psy3233          89 MIDEAYHFASSSLLTLLMQDYDLVNRIR  116 (116)
Q Consensus        89 ~Id~ay~~As~~Ll~lL~~~~~L~~hL~  116 (116)
                      .|++||....++|.++|.+.|+|.+|++
T Consensus       493 ~v~~ay~e~inhl~~ll~~~~~l~dh~~  520 (879)
T KOG2000|consen  493 SVSEAYSEIVNHLNDILEEVISLLDHNQ  520 (879)
T ss_pred             HHhhhhccchHHHHHHHHHHhhHHHHHH
Confidence            9999999999999999999999999974

>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin

Probab=99.52  E-value=1.2e-14  Score=117.56  Aligned_cols=104  Identities=28%  Similarity=0.577  Sum_probs=59.0

Q ss_pred             CCCCCHHhhhccceeccCCCCChhh-HHHHHHHHhhhHHHHHHHHhhCCCcchhhhhH----------HhhhhhhccccC
Q psy3233          12 DGKYSEDYWVQRYIIQNESNVPSFL-EHVKDKILRTGKYLNVIRKCKASVQSKCLLDK----------QRQRAAEMKYME   80 (116)
Q Consensus        12 ~~~~~d~~W~~rY~lr~~~~iP~FL-~~~a~kIL~TGK~lN~lR~c~~~~~~~~~~~~----------~~~~~~~l~~~~   80 (116)
                      ....++.+|+++|+++++ ++|.|+ .++|++|+.+||++++||.|+...........          .........+..
T Consensus       206 ~~~~~~~~w~~~f~l~~~-~~P~fl~~~~a~~Il~~Gk~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (542)
T PF04130_consen  206 NSESSEDFWDDRFVLRES-RVPSFLSKDLAEKILEIGKSLRLLRSCNPEHEWCSDQELSSDLCLSDKESSESSSLQPFEP  284 (542)
T ss_dssp             ------------EEE-GG-GS-TTS-HHHHHHHHHHHHHHHT------S------TT-SHHH----HHHHHHHHHHT-SS
T ss_pred             cCcccchhhccCEEECcc-cCChhcCHHHHHHHHHHHHHHHHHHHhccccccchhccchhhhhhhhhhhhhHHHhccccc
Confidence            455678999999999999 999999 55999999999999999999877543211100          000111111222


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhccccchhccC
Q psy3233          81 STDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR  116 (116)
Q Consensus        81 ~~~~~~~~~Id~ay~~As~~Ll~lL~~~~~L~~hL~  116 (116)
                      .....++..|++.|..+|+.|+++|+++++|.+||+
T Consensus       285 ~~~~~l~~~i~~~~~~~~~~l~~~l~~~~~l~~~l~  320 (542)
T PF04130_consen  285 LDQDKLESKIESQYKLVNKSLLDLLFEDYNLLEHLK  320 (542)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            578999999999999999999999999999999984

The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	116
3rip_A	677	Gamma-tubulin complex component 4; helix bundles,	2e-07

>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Length = 677

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 15/120 (12%), Positives = 51/120 (42%), Gaps = 8/120 (6%)

Query: 4   EKLENDVLDGKYSEDYWVQRYIIQNESNVPSFL-EHVKDKILRTGKYLNVIRKCKASVQS 62
           E  +  +++ +      ++++ +     +PS++   V +KIL  G+ + +      ++  
Sbjct: 237 ELQDLRLIEEENMLAPSLKQFSL-RVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTR 295

Query: 63  KCLLDKQRQRAAEMK------YMESTDSALIRMIDEAYHFASSSLLTLLMQDYDLVNRIR 116
           K  + K ++     +          +     +++D      +  L  L++++ DL+ +++
Sbjct: 296 KGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLK 355

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	116
3rip_A	677	Gamma-tubulin complex component 4; helix bundles,	99.76

>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}

Probab=99.76  E-value=1.9e-19  Score=151.25  Aligned_cols=99  Identities=14%  Similarity=0.258  Sum_probs=72.4

Q ss_pred             HHhhhccceeccCCCCChhhHH-HHHHHHhhhHHHHHHHHhhCCCcchhh--hhHHhh---hhhhc-cccCCchhHHHHH
Q psy3233          17 EDYWVQRYIIQNESNVPSFLEH-VKDKILRTGKYLNVIRKCKASVQSKCL--LDKQRQ---RAAEM-KYMESTDSALIRM   89 (116)
Q Consensus        17 d~~W~~rY~lr~~~~iP~FL~~-~a~kIL~TGK~lN~lR~c~~~~~~~~~--~~~~~~---~~~~l-~~~~~~~~~~~~~   89 (116)
                      .+||+++|+||.+ |||.||++ +|+|||.||||+||||+||...+....  .+...+   ....+ ..+..+...|+..
T Consensus       250 ~~~w~~~y~l~~~-~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~e~~  328 (677)
T 3rip_A          250 LAPSLKQFSLRVE-ILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQV  328 (677)
T ss_dssp             ---CCCCEEECGG-GSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred             ccchhcceeecHh-hCcCccCHHHHHHHHHhhHHHHHHHccCCCCCcccccccchHHHHHHHHHHHhccccCCHHHHHHH
Confidence            3689999999999 99999987 999999999999999998865321100  000000   00111 1111357799999


Q ss_pred             HHHHHHHHHHHHHHHHhccccchhccC
Q psy3233          90 IDEAYHFASSSLLTLLMQDYDLVNRIR  116 (116)
Q Consensus        90 Id~ay~~As~~Ll~lL~~~~~L~~hL~  116 (116)
                      |+++|..||+.|+++|+++|+|++||+
T Consensus       329 I~~~~~~as~~Ll~lL~~~~~L~~hL~  355 (677)
T 3rip_A          329 VDRIRSTVAEHLWKLMVEESDLLGQLK  355 (677)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            999999999999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00