Psyllid ID: psy6339

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-----
MNNPNISSYVRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILNVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTFPMVMIP
cccccccccccccHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccEEEEEEcccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccEEEEccccccccccccccccccEEEEEEHHHHcccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccHHHHHHHHHHHHHHHHccccccEEcccccEEccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccEEccccHHHHccccccccccccccccEEEEEEcccccccccccccccEEEEEEcccccccEEEEEEEEEEEccEEEEEEEEEEcEEEccccEEEEEEcHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEccHHHcHHcccccccccccccccEEEEEcccccccccEEEccccccccccccccEEEEccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccHHccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHcccccccccccEEEEccccccc
cccccccccccccHHHHHHHHHHHHHHHcccEEEccccccccccccEEEEcccccccccccccccccccccccccHHEEEcccccccHHcccccccccHHHHHHccccccHHHHHHHHHHHHHHHcccHccccHHHEEEEEEcccHHccccccHHHHHHHHHccccHHHEEEEccccccHHcccccccccccEEEEcccccccccccccccccccEEEEEEEEEEEEccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEHHHccHHHHcccccccccccEEEEEEccccccccHHHHHHHHccccEcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHEEccccccEcccccccccEEEEEEEEcccEEEcEccEEEEEEccccccHHHHcccccEEEEEccccEEEcccccccccEEEEEcccccccEEEEEEccEccccEEEEEEEEEEcEEEEcccEEEEEEcHHHHHHHHHHccHHHHHHHHHHHHHcHHHcccccccccHcEEEcccccccccHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHcccEEEEEccccccEEEEEEEcccccccEEEEccccEEcccccccEEEEEcHHHHHHHcEEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHccccccccHHHHHccccEEEccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccEEEEccEEEcc
MNNPNISSYVRLCSKSIRSSFLDYFCntqghtlvksspivpygddsiAFVNSGMCQFknvflgltpapyprvansqkcvrvggkhndlscagrdsyHHTFFEMLgnwsfndyYKRDACRMALEfltkppvslpldrlyftyfggsdqyglpcdeeTRDIWLelgvprdhikkegmkcnfwemgstgpcgysseihydmkgepssalARVNADRNDLIEIWNIVFIShkrvsadtivplsknyidtglGFERLVTILQnktstydtdlFLPLLETIEKvsgakpygrtfttsnrtdldtsYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWkplvktqpeleqfnimeepglvLGVKYLTKqlardpsiteisgdMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSkakaasnvpdidlmdlkhfpvtddkykydyhydtnskrytfpcldtnlvgivigdqvfcidkhairharsgasidsIQLEHNAWVGLifdktnlyataggqiddIGVAYLtnttqengkVEIGELASLEGKIVHFGNVvssfkvtpgltsrVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYqkscrvfsdecaldfsvygetlsvDSVAAVEKYINDVIANQvqvdrrhmraselpflthltvipgeiypddvilidisdkenvisrepccgthvfntghiesctvigyksynhgvrsikcltgdsskAAVENGKHLSTAASFSqilnvgnipygddsIAFVNSGMCQFknvflgltpapyprvansqkcirvggkhndlsfagrdsyHHTFFEMLgnwsfndyYKRDACRMALEfltkppvslpldrlyftfpmvmip
MNNPNISSYVRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFltkppvslpLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFIshkrvsadtivPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEkvsgakpygrtfttsnrtdldtsYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLIsedvfkvkqgklvKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKplvktqpeleqfnimeepgLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELkerskakaasnvpdidlmdlkhfpvtdDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFgnvvssfkvtpgltsrVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRAselpflthltvipgeiYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILNVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFltkppvslpldrlYFTFPMVMIP
MNNPNISSYVRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTddkykydyhydTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILNVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTFPMVMIP
*******SYVRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDM*******LARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQ*****************PDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDS**AAVENGKHLSTAASFSQILNVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTFPMVM**
****************IRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKY***************GDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQ**********************MDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGAS****QLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTA*******************AFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTFPMVMI*
********YVRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELK********SNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILNVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTFPMVMIP
*********VRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYG**FTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILNVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTFPMVMIP
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MNNPNISSYVRLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAxxxxxxxxxxxxxxxxxxxxxSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILNVGNIPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCIRVGGKHNDLSFAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTFPMVMIP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query925 2.2.26 [Sep-21-2011]
Q9VRJ11012 Alanine--tRNA ligase, mit yes N/A 0.84 0.767 0.378 1e-151
P50475968 Alanine--tRNA ligase, cyt yes N/A 0.807 0.771 0.348 1e-127
Q9VLM8966 Alanine--tRNA ligase, cyt no N/A 0.791 0.757 0.345 1e-126
Q8CFX8968 Alanine--tRNA ligase, cyt N/A N/A 0.806 0.770 0.341 1e-126
Q8BGQ7968 Alanine--tRNA ligase, cyt yes N/A 0.802 0.766 0.347 1e-125
P49588968 Alanine--tRNA ligase, cyt yes N/A 0.803 0.767 0.344 1e-124
O01541968 Alanine--tRNA ligase, cyt yes N/A 0.798 0.763 0.340 1e-124
Q5RC02968 Alanine--tRNA ligase, cyt yes N/A 0.804 0.768 0.344 1e-124
P21894967 Alanine--tRNA ligase, cyt N/A N/A 0.790 0.755 0.341 1e-122
Q5A8K2969 Alanine--tRNA ligase OS=C N/A N/A 0.805 0.768 0.340 1e-121
>sp|Q9VRJ1|SYAM_DROME Alanine--tRNA ligase, mitochondrial OS=Drosophila melanogaster GN=Aats-ala-m PE=2 SV=1 Back     alignment and function desciption
 Score =  536 bits (1381), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 309/817 (37%), Positives = 455/817 (55%), Gaps = 40/817 (4%)

Query: 12  LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
           L ++ IR +FLD+F    GH  V+SSP+VP+ D ++AFVN+GM QFK+VFLG   AP+ R
Sbjct: 12  LTAREIRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKR 71

Query: 72  VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
           V NSQKCVRVGGKHNDLS  G D YHHTFFEMLGNWSF DY+KR+AC MALE L + P +
Sbjct: 72  VVNSQKCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELL-RGPYN 130

Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYS 191
           +   RLY TYF G    G+P D E  +IW  LG P   I   G   NFWEMG+TGPCG  
Sbjct: 131 IDPGRLYVTYFAGDKVLGIPADLECFEIWRSLGFPASRILPFGCADNFWEMGATGPCGPC 190

Query: 192 SEIHYDMKGEPSSALAR---VNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLG 248
           +EIH D + +  S   R   VNA R+DL E+WN+VFI + R +  +I  L  +++DTG+G
Sbjct: 191 TEIHIDHRPDLGSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGMG 250

Query: 249 FERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTT-SNRTDLDTSYRMLSDYS 307
           FERL  +LQNK+S YDTDLF P+ + I++ +    Y  +F    N   LDTSYR+L+D++
Sbjct: 251 FERLTAVLQNKSSNYDTDLFTPIFDGIQQAAKTPVYSGSFPDGGNAAVLDTSYRILADHA 310

Query: 308 RMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEI 367
           RM+T  LAD M PD   KLR V+R AL ISE VF     KL+ +L   + E LG+ YPE+
Sbjct: 311 RMVTACLADGMLPDQNQKLRRVLRKALNISEHVF--AHDKLLTQLVPIVVETLGEAYPEM 368

Query: 368 QDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQ 427
                 +  ++  E  ++ NLR+++ K +  ++   P L+  ++ME PG V   + L  Q
Sbjct: 369 AAKQQAVIDLICHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYRELQMQ 428

Query: 428 LARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAF--EQKLNELKERSKA 485
             +  + T I GD  + L DTYGL++    +LA  + +    E +  E  L +LK +   
Sbjct: 429 RCKFSNNT-IPGDFLYKLTDTYGLTEESFLKLAELENMNCDLERYRAEVSLAKLKAKGNQ 487

Query: 486 KAASNVPDIDL-----------MDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGI 534
           +  +     DL           M  K    TD+ +KY Y +D  S  Y  P L T ++G+
Sbjct: 488 RETAGGSLCDLATEQRIAEAQAMLTKRLTPTDNSHKYTYSFDKESDSYQIPPLKTRVLGM 547

Query: 535 VIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLT 594
           ++ D            +R+  S   IQ      + ++   +N Y  +GGQ  D G   ++
Sbjct: 548 LLNDAEV---------SRTQGS--RIQQPFTDLISIVTAGSNFYYESGGQQSDGGKILVS 596

Query: 595 NTTQEN--GKVEIGELASLEGKIVHFGNVVS---SFKVTPGLTSRVEVDARMRLGCMRAH 649
           N  Q +    +++  +  L   +VH   + S   +F++  G    ++VDA+ R      H
Sbjct: 597 NHQQPDHPHSLDVIGVKHLNDCVVHICKLSSPTDAFQLAIGDEVELQVDAQQRQLNTCHH 656

Query: 650 TTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQ 708
           T +HLLNAA+R +    TYQ S  V SD+C L+  + G+ +    V  +E  IN VI + 
Sbjct: 657 TATHLLNAAIRSLFKKVTYQVSSSVSSDQCKLELGLLGKRIQKTDVQLIEDLINRVICSA 716

Query: 709 VQVDRRHMRASELPFLTHLTVIPGEIYPDDVI-LIDISDKE-NVISREPCCGTHVFNTGH 766
             V+ + + A+E+     +T++PGE+YP+  + L+++   E  + S+E CCGTH  NT  
Sbjct: 717 APVEVQLLSAAEVLEQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHATNTSE 776

Query: 767 IESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKHL 803
           +    ++  K  N    +   + G +++  ++    L
Sbjct: 777 LSCFCIVNLKQTNRARFAFTAVAGQAAENVLKTAALL 813
Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7
>sp|P50475|SYAC_RAT Alanine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Aars PE=1 SV=3 Back     alignment and function description
>sp|Q9VLM8|SYAC_DROME Alanine--tRNA ligase, cytoplasmic OS=Drosophila melanogaster GN=Aats-ala PE=2 SV=1 Back     alignment and function description
>sp|Q8CFX8|SYAC_MESAU Alanine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=Aars PE=2 SV=1 Back     alignment and function description
>sp|Q8BGQ7|SYAC_MOUSE Alanine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Aars PE=1 SV=1 Back     alignment and function description
>sp|P49588|SYAC_HUMAN Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 Back     alignment and function description
>sp|O01541|SYAC_CAEEL Alanine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=aars-2 PE=2 SV=1 Back     alignment and function description
>sp|Q5RC02|SYAC_PONAB Alanine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=AARS PE=2 SV=1 Back     alignment and function description
>sp|P21894|SYAC_BOMMO Alanine--tRNA ligase, cytoplasmic OS=Bombyx mori PE=1 SV=1 Back     alignment and function description
>sp|Q5A8K2|SYA_CANAL Alanine--tRNA ligase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ALA1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query925
3071768811005 Alanyl-tRNA synthetase, cytoplasmic [Cam 0.833 0.767 0.403 1e-168
3227956781018 hypothetical protein SINV_04921 [Solenop 0.84 0.763 0.394 1e-166
3072125801019 Alanyl-tRNA synthetase, cytoplasmic [Har 0.837 0.760 0.392 1e-166
340728025882 PREDICTED: LOW QUALITY PROTEIN: alanyl-t 0.847 0.888 0.392 1e-165
3838529791007 PREDICTED: alanine--tRNA ligase, mitocho 0.859 0.789 0.380 1e-163
91087359 1044 PREDICTED: similar to mitochondrial alan 0.829 0.734 0.410 1e-162
380017803861 PREDICTED: alanine--tRNA ligase, mitocho 0.84 0.902 0.382 1e-162
350402768885 PREDICTED: alanyl-tRNA synthetase, mitoc 0.847 0.885 0.391 1e-162
332026963 1085 Alanyl-tRNA synthetase, cytoplasmic [Acr 0.843 0.718 0.392 1e-160
1954919331012 GE21485 [Drosophila yakuba] gi|194179878 0.84 0.767 0.380 1e-154
>gi|307176881|gb|EFN66222.1| Alanyl-tRNA synthetase, cytoplasmic [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 322/798 (40%), Positives = 469/798 (58%), Gaps = 27/798 (3%)

Query: 17  IRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQ 76
           IR  FLDYF N   H++++SSP+ P  D S+AF+N+GM QFK +FL     P  +V NSQ
Sbjct: 22  IRKEFLDYFSNDLKHSIIRSSPVSPIADQSLAFINAGMNQFKGIFLDYHEPPAAKVVNSQ 81

Query: 77  KCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDR 136
           KC+RVGGKHNDLS  G DSYHHTFFEMLGNWSF DY+K DAC  A   LT     +P + 
Sbjct: 82  KCIRVGGKHNDLSVVGNDSYHHTFFEMLGNWSFGDYFKEDACTYAWNLLTNI-YGIPEEC 140

Query: 137 LYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHY 196
           LY TYFGG+++ G+  D E ++IWL LG+P   +   GM+ NFWEMG +GPCG  +EIH 
Sbjct: 141 LYVTYFGGNEKLGMAPDLECKNIWLRLGLPECKVLPFGMRDNFWEMGLSGPCGPCTEIHV 200

Query: 197 DMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTIL 256
           D     ++  ARVN    DL+E+WNIVFI ++R++  +IVPLSK+++DTG+GFERLVT L
Sbjct: 201 DFMRRNTNQAARVNKGYADLMELWNIVFIQYERLANGSIVPLSKHHVDTGMGFERLVTFL 260

Query: 257 QNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALAD 316
           Q K S YDTDLF PL + I+K S A  Y  TF   +   LD  YR+L+D++RM+TVALAD
Sbjct: 261 QGKKSNYDTDLFQPLFDAIQKHSNAPNYKGTFDNDDTGKLDYGYRILADHTRMVTVALAD 320

Query: 317 NMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQL 376
           NM P+   KLR ++R+A+ + E +F  K G +V EL+Y +A+ L   YPE+ +++ ++Q 
Sbjct: 321 NMLPEEQKKLRRILRNAINVGEKIFH-KSG-IVTELAYTVADNLDAAYPELHNNLKQVQR 378

Query: 377 ILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITE 436
           I+  E  +F  LR  + K+W  +++ +PEL        PGLV G K L   L        
Sbjct: 379 IIDFEEDLFKRLRNTSGKKWSKMIEIRPELASITDWMAPGLVDGYKELQSMLKELRKTNI 438

Query: 437 ISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNV----P 492
           +SG +AF LYDTYGL+   I ELA  + L      FE++L+  + +SK     N      
Sbjct: 439 LSGTVAFKLYDTYGLNSETIAELAEIESLHFDEIDFEKQLDNHRYQSKIGLDKNSILTKE 498

Query: 493 DIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHAR 552
            +++++  H P T+D +KY+Y Y+ N+    FP L++ L+GI+I  ++       I   R
Sbjct: 499 SLEILEKDHVPKTNDSFKYNYTYNGNNYE--FPALNSKLIGIIINGEL------VINKTR 550

Query: 553 SGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLE 612
              ++  I       +G+I DKT  Y++ GGQ+ DIG     N + +N    I  +  + 
Sbjct: 551 KTINVKEI-YNSTDEIGIILDKTVCYSSEGGQVSDIG-----NISIKNLFFNIDNVIKIN 604

Query: 613 GKIVHFGNV------VSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCT 666
           G ++H G         S   +  G    V ++  +R+G M+ HT +HLLNAAL++V+   
Sbjct: 605 GYVIHSGYFAKIDLPTSELYLQIGDDCLVNIEPNIRIGAMKHHTATHLLNAALKQVMQVV 664

Query: 667 YQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTH 726
           YQ S  V +D     F+ +GE L++D +  +E  IN++I  +  +    +   EL     
Sbjct: 665 YQSSSTVNADNLKFQFNSFGEQLTLDQMRIIEHCINNIIQTRAAITVETLNLLELLKQDD 724

Query: 727 LTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIK 786
           +T+IPGEIYP   I +   +  N+ S+E CCGTHV NT  ++    + Y S     R++K
Sbjct: 725 ITLIPGEIYPYTGIKVIEINANNLKSKETCCGTHVHNTSVLQHFCFLTYTSKGTTKRTVK 784

Query: 787 CLTGDSSKAAVENGKHLS 804
            + G  +    + G+ +S
Sbjct: 785 AIVGQEALRMKQAGERIS 802

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|322795678|gb|EFZ18357.1| hypothetical protein SINV_04921 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307212580|gb|EFN88295.1| Alanyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|340728025|ref|XP_003402333.1| PREDICTED: LOW QUALITY PROTEIN: alanyl-tRNA synthetase, mitochondrial-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383852979|ref|XP_003702002.1| PREDICTED: alanine--tRNA ligase, mitochondrial-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|91087359|ref|XP_975627.1| PREDICTED: similar to mitochondrial alanyl-tRNA synthetase CG4633-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|380017803|ref|XP_003692834.1| PREDICTED: alanine--tRNA ligase, mitochondrial-like [Apis florea] Back     alignment and taxonomy information
>gi|350402768|ref|XP_003486595.1| PREDICTED: alanyl-tRNA synthetase, mitochondrial-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332026963|gb|EGI67059.1| Alanyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|195491933|ref|XP_002093777.1| GE21485 [Drosophila yakuba] gi|194179878|gb|EDW93489.1| GE21485 [Drosophila yakuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query925
FB|FBgn00289621012 Aats-ala-m "mitochondrial alan 0.830 0.758 0.373 4.7e-135
FB|FBgn0027094966 Aats-ala "Alanyl-tRNA syntheta 0.4 0.383 0.463 7.3e-117
ZFIN|ZDB-GENE-041008-2131022 aars2 "alanyl-tRNA synthetase 0.412 0.373 0.483 8.6e-117
UNIPROTKB|F1N8U6816 AARS2 "Uncharacterized protein 0.396 0.449 0.474 3.7e-116
UNIPROTKB|F1NC50991 AARS2 "Uncharacterized protein 0.396 0.370 0.474 3.7e-116
MGI|MGI:2384560968 Aars "alanyl-tRNA synthetase" 0.395 0.378 0.462 4.2e-115
UNIPROTKB|F1P5J5916 AARS "Uncharacterized protein" 0.4 0.403 0.455 6.9e-115
RGD|1304832968 Aars "alanyl-tRNA synthetase" 0.395 0.378 0.465 1.1e-114
WB|WBGene00000197968 aars-2 [Caenorhabditis elegans 0.421 0.402 0.414 7.8e-114
UNIPROTKB|F1P7C2968 AARS "Uncharacterized protein" 0.395 0.378 0.462 1.1e-112
FB|FBgn0028962 Aats-ala-m "mitochondrial alanyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1323 (470.8 bits), Expect = 4.7e-135, P = 4.7e-135
 Identities = 302/808 (37%), Positives = 446/808 (55%)

Query:    12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
             L ++ IR +FLD+F    GH  V+SSP+VP+ D ++AFVN+GM QFK+VFLG   AP+ R
Sbjct:    12 LTAREIRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKR 71

Query:    72 VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
             V NSQKCVRVGGKHNDLS  G D YHHTFFEMLGNWSF DY+KR+AC MALE L + P +
Sbjct:    72 VVNSQKCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELL-RGPYN 130

Query:   132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYS 191
             +   RLY TYF G    G+P D E  +IW  LG P   I   G   NFWEMG+TGPCG  
Sbjct:   131 IDPGRLYVTYFAGDKVLGIPADLECFEIWRSLGFPASRILPFGCADNFWEMGATGPCGPC 190

Query:   192 SEIHYDMKGEPSSALAR---VNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLG 248
             +EIH D + +  S   R   VNA R+DL E+WN+VFI + R +  +I  L  +++DTG+G
Sbjct:   191 TEIHIDHRPDLGSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGMG 250

Query:   249 FERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTS-NRTDLDTSYRMLSDYS 307
             FERL  +LQNK+S YDTDLF P+ + I++ +    Y  +F    N   LDTSYR+L+D++
Sbjct:   251 FERLTAVLQNKSSNYDTDLFTPIFDGIQQAAKTPVYSGSFPDGGNAAVLDTSYRILADHA 310

Query:   308 RMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEI 367
             RM+T  LAD M PD   KLR V+R AL ISE VF     KL+ +L   + E LG+ YPE+
Sbjct:   311 RMVTACLADGMLPDQNQKLRRVLRKALNISEHVFA--HDKLLTQLVPIVVETLGEAYPEM 368

Query:   368 QDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQ 427
                   +  ++  E  ++ NLR+++ K +  ++   P L+  ++ME PG V   + L  Q
Sbjct:   369 AAKQQAVIDLICHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYRELQMQ 428

Query:   428 LARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAF--EQKLNELKERSKA 485
               +  + T I GD  + L DTYGL++    +LA  + +    E +  E  L +LK +   
Sbjct:   429 RCKFSNNT-IPGDFLYKLTDTYGLTEESFLKLAELENMNCDLERYRAEVSLAKLKAKGNQ 487

Query:   486 KAASNVPDIDLMDLKHFPVTXXXXXXXXXXXTNSKRYTF-----------PCLDTNLVGI 534
             +  +     DL   +                 NS +YT+           P L T ++G+
Sbjct:   488 RETAGGSLCDLATEQRIAEAQAMLTKRLTPTDNSHKYTYSFDKESDSYQIPPLKTRVLGM 547

Query:   535 VIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLT 594
             ++ D            +R+  S   IQ      + ++   +N Y  +GGQ  D G   ++
Sbjct:   548 LLNDAEV---------SRTQGS--RIQQPFTDLISIVTAGSNFYYESGGQQSDGGKILVS 596

Query:   595 NTTQENG--KVEIGELASLEGKIVHFGNVVS---SFKVTPGLTSRVEVDARMRLGCMRAH 649
             N  Q +    +++  +  L   +VH   + S   +F++  G    ++VDA+ R      H
Sbjct:   597 NHQQPDHPHSLDVIGVKHLNDCVVHICKLSSPTDAFQLAIGDEVELQVDAQQRQLNTCHH 656

Query:   650 TTSHLLNAALRRVLT-CTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQ 708
             T +HLLNAA+R +    TYQ S  V SD+C L+  + G+ +    V  +E  IN VI + 
Sbjct:   657 TATHLLNAAIRSLFKKVTYQVSSSVSSDQCKLELGLLGKRIQKTDVQLIEDLINRVICSA 716

Query:   709 VQVDRRHMRASELPFLTHLTVIPGEIYPDDVI-LIDISDKE-NVISREPCCGTHVFNTGH 766
               V+ + + A+E+     +T++PGE+YP+  + L+++   E  + S+E CCGTH  NT  
Sbjct:   717 APVEVQLLSAAEVLEQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHATNTSE 776

Query:   767 IESCTVIGYKSYNHGVRSIKCLTGDSSK 794
             +    ++  K  N    +   + G +++
Sbjct:   777 LSCFCIVNLKQTNRARFAFTAVAGQAAE 804
GO:0005739 "mitochondrion" evidence=ISS
GO:0006419 "alanyl-tRNA aminoacylation" evidence=ISS
GO:0004813 "alanine-tRNA ligase activity" evidence=ISS;NAS
GO:0005524 "ATP binding" evidence=IEA
GO:0003676 "nucleic acid binding" evidence=IEA
FB|FBgn0027094 Aats-ala "Alanyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041008-213 aars2 "alanyl-tRNA synthetase 2, mitochondrial (putative)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8U6 AARS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NC50 AARS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2384560 Aars "alanyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1P5J5 AARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1304832 Aars "alanyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00000197 aars-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1P7C2 AARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A6L1L8SYA_BACV86, ., 1, ., 1, ., 70.32570.73720.7830yesN/A
A6U9N4SYA_SINMW6, ., 1, ., 1, ., 70.31200.74590.7779yesN/A
Q0TEI3SYA_ECOL56, ., 1, ., 1, ., 70.31940.72640.7671yesN/A
P36428SYA_ARATH6, ., 1, ., 1, ., 70.33620.77180.7118yesN/A
Q7MV54SYA_PORGI6, ., 1, ., 1, ., 70.31450.73510.7762yesN/A
A9WCR2SYA_CHLAA6, ., 1, ., 1, ., 70.31350.760.7863yesN/A
O13914SYA_SCHPO6, ., 1, ., 1, ., 70.32190.77180.7445yesN/A
Q13W97SYA_BURXL6, ., 1, ., 1, ., 70.31270.72970.7723yesN/A
O01541SYAC_CAEEL6, ., 1, ., 1, ., 70.34060.79890.7634yesN/A
Q1GHA1SYA_RUEST6, ., 1, ., 1, ., 70.30750.76100.7972yesN/A
Q65VQ5SYA_MANSM6, ., 1, ., 1, ., 70.31920.73180.7737yesN/A
A4SGJ6SYA_PROVI6, ., 1, ., 1, ., 70.33490.74590.7796yesN/A
Q8BGQ7SYAC_MOUSE6, ., 1, ., 1, ., 70.34740.80210.7665yesN/A
A1BD33SYA_CHLPD6, ., 1, ., 1, ., 70.33330.73940.7702yesN/A
Q54Y20SYAC_DICDI6, ., 1, ., 1, ., 70.30450.78050.7632yesN/A
P40825SYA_YEAST6, ., 1, ., 1, ., 70.32680.77720.7314yesN/A
P50475SYAC_RAT6, ., 1, ., 1, ., 70.34860.80750.7716yesN/A
Q5RC02SYAC_PONAB6, ., 1, ., 1, ., 70.34490.80430.7685yesN/A
B1XCM5SYA_ECODH6, ., 1, ., 1, ., 70.31940.72640.7671yesN/A
A5FIP9SYA_FLAJ16, ., 1, ., 1, ., 70.31780.76430.8043yesN/A
Q1R804SYA_ECOUT6, ., 1, ., 1, ., 70.31820.72640.7671yesN/A
P61700SYA_DESVH6, ., 1, ., 1, ., 70.30650.73080.7690yesN/A
Q9VRJ1SYAM_DROME6, ., 1, ., 1, ., 70.37820.840.7677yesN/A
A8A3H4SYA_ECOHS6, ., 1, ., 1, ., 70.31940.72640.7671yesN/A
Q3ATN3SYA_CHLCH6, ., 1, ., 1, ., 70.32590.73620.7686yesN/A
Q32CN1SYA_SHIDS6, ., 1, ., 1, ., 70.31940.72640.7671yesN/A
Q64YB4SYA_BACFR6, ., 1, ., 1, ., 70.33410.73940.7844yesN/A
B2V709SYA_SULSY6, ., 1, ., 1, ., 70.32450.75450.7968yesN/A
B1K026SYA_BURCC6, ., 1, ., 1, ., 70.30120.73940.7826yesN/A
Q8KG04SYA_CHLTE6, ., 1, ., 1, ., 70.31920.74590.7796yesN/A
O67323SYA_AQUAE6, ., 1, ., 1, ., 70.33370.75350.8039yesN/A
Q5LHE6SYA_BACFN6, ., 1, ., 1, ., 70.33410.73940.7844yesN/A
A1VEQ6SYA_DESVV6, ., 1, ., 1, ., 70.30650.73080.7690yesN/A
Q5AQL1SYA_EMENI6, ., 1, ., 1, ., 70.33570.78590.7565yesN/A
P49588SYAC_HUMAN6, ., 1, ., 1, ., 70.34420.80320.7675yesN/A
A6LEZ8SYA_PARD86, ., 1, ., 1, ., 70.32910.74810.7926yesN/A
Q3B1I7SYA_PELLD6, ., 1, ., 1, ., 70.31780.75020.7824yesN/A
B2SZN0SYA_BURPP6, ., 1, ., 1, ., 70.30820.72750.7700yesN/A
A8ANQ1SYA_CITK86, ., 1, ., 1, ., 70.31160.72860.7702yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.70.824
3rd Layer6.1.10.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query925
PLN02900936 PLN02900, PLN02900, alanyl-tRNA synthetase 1e-175
PRK00252865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 1e-169
COG0013879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 1e-165
pfam01411551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 1e-151
TIGR00344851 TIGR00344, alaS, alanine--tRNA ligase 1e-150
cd00673232 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS 1e-96
PRK01584594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 4e-80
cd00673 232 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS 7e-42
pfam01411 551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 1e-41
PRK00252 865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 6e-40
PLN02900 936 PLN02900, PLN02900, alanyl-tRNA synthetase 4e-37
TIGR03683902 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase 5e-36
COG0013 879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 7e-36
TIGR00344 851 TIGR00344, alaS, alanine--tRNA ligase 9e-32
PRK13902900 PRK13902, alaS, alanyl-tRNA synthetase; Provisiona 2e-31
PRK01584 594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 3e-16
COG2872241 COG2872, COG2872, Predicted metal-dependent hydrol 6e-16
PRK01584594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 5e-11
pfam0797344 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synt 4e-05
PLN02961223 PLN02961, PLN02961, alanine-tRNA ligase 4e-05
TIGR03683 902 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase 6e-04
smart0086343 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syn 6e-04
PRK13902 900 PRK13902, alaS, alanyl-tRNA synthetase; Provisiona 8e-04
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information 
 Score =  533 bits (1375), Expect = e-175
 Identities = 286/822 (34%), Positives = 424/822 (51%), Gaps = 103/822 (12%)

Query: 15  KSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLG-----LTPAPY 69
             IR +FL +F  ++GHT + SSP+VP  D ++ F N+GM QFK +FLG           
Sbjct: 14  DRIRRTFLSFF-ESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKL 72

Query: 70  PRVANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPP 129
           PR  N+QKC+R GGKHNDL   G+D+YHHTFFEMLGNWSF DY+K++A   A E LTK  
Sbjct: 73  PRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTK-V 131

Query: 130 VSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCG 189
             LP DRLY TYFGG +      D+E R IWL+  +P + +   G K NFWEMG TGPCG
Sbjct: 132 YGLPADRLYATYFGGDE--KQAPDDEARAIWLDY-LPEERVLPFGCKDNFWEMGDTGPCG 188

Query: 190 YSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGF 249
             SEIHYD  GE  +A   VN D    IEIWN+VFI   R +  ++ PL   ++DTG+G 
Sbjct: 189 PCSEIHYDRIGERDAADL-VNNDDPRFIEIWNLVFIQFNREADGSLKPLPAKHVDTGMGL 247

Query: 250 ERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRM 309
           ERL +ILQNK S YDTDLF+P+ + I++ +GA+PY       +   +D +YR+++D+ R 
Sbjct: 248 ERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRT 307

Query: 310 ITVALADNMFPDATAK---LRNVVRDALLISEDVFKVKQG---KLVKELSYNIAEILGDV 363
           ++ A+AD + P    +   LR ++R A+     +   ++G    LV+ +     E+ GDV
Sbjct: 308 LSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVV----VELSGDV 363

Query: 364 YPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKY 423
           +PE++ +  +I  I+ EE   F               KT              L  G++ 
Sbjct: 364 FPEVKKNEKRITEIIAEEELSF--------------GKT--------------LEKGIEK 395

Query: 424 LTKQL--ARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKE 481
             K L  A+      +SG  AF LYDTYG   ++ + +A  + +T+  E FE  + E +E
Sbjct: 396 FKKALAAAKANGGPVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARE 455

Query: 482 RSK-AKAASNVPDIDL-------MDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVG 533
           RS+ A   +    I+L       +  +    TDD  KYD+  D  +           +  
Sbjct: 456 RSRAAHLKAGGGAIELAAEATSWLQKQGVAATDDFLKYDWLSDHEAV----------VKA 505

Query: 534 IVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYL 593
           I+ G                G  ++S+       VG++ DKT+ YA +GGQI D GV   
Sbjct: 506 ILTG----------------GGFVESVSEGDE--VGIVLDKTSFYAESGGQIGDTGVLEG 547

Query: 594 TNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSH 653
           +        VE+ ++    G ++H G  V+   V+ G     +VD   R      HT +H
Sbjct: 548 SG----GAVVEVSDVQKAGGFVLHIG-TVTEGSVSVGDAVTCKVDYDRRRRIAPNHTATH 602

Query: 654 LLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVD 712
           LLN+AL+ VL     QK   V  ++   DFS +G+ ++ + +  VE  +N+ I + + V+
Sbjct: 603 LLNSALKEVLGDHVDQKGSLVAFEKLRFDFS-HGKPMTPEELREVESLVNEWIGDALPVE 661

Query: 713 RRHMRASELPFLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTV 772
            + M  ++   +  L  + GE YPD V ++ +       S E C GTHV NT   E+  +
Sbjct: 662 AKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGGV---YSMELCGGTHVSNTAEAEAFKL 718

Query: 773 IGYKSYNHGVRSIKCLTGDSSKAAVENGKHLSTAASFSQILN 814
           +  +    G+R I  +TG    AAVE    ++ A S  + L+
Sbjct: 719 LSEEGIAKGIRRITAVTGG---AAVE---AINAADSLERELD 754

Length = 936
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain Back     alignment and domain information
>gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase Back     alignment and domain information
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain Back     alignment and domain information
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 925
KOG0188|consensus895 100.0
COG0013879 AlaS Alanyl-tRNA synthetase [Translation, ribosoma 100.0
PLN02900936 alanyl-tRNA synthetase 100.0
TIGR00344851 alaS alanine--tRNA ligase. The model describes ala 100.0
PRK00252865 alaS alanyl-tRNA synthetase; Reviewed 100.0
PRK01584594 alanyl-tRNA synthetase; Provisional 100.0
TIGR03683902 A-tRNA_syn_arch alanyl-tRNA synthetase. This famil 100.0
PRK13902900 alaS alanyl-tRNA synthetase; Provisional 100.0
PF01411552 tRNA-synt_2c: tRNA synthetases class II (A); Inter 100.0
cd00673232 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II 100.0
PLN02961223 alanine-tRNA ligase 100.0
COG2872241 Predicted metal-dependent hydrolases related to al 100.0
cd00673 232 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II 100.0
PF01411 552 tRNA-synt_2c: tRNA synthetases class II (A); Inter 100.0
PLN02900 936 alanyl-tRNA synthetase 100.0
KOG0188|consensus 895 100.0
COG0013 879 AlaS Alanyl-tRNA synthetase [Translation, ribosoma 100.0
TIGR00344 851 alaS alanine--tRNA ligase. The model describes ala 100.0
PRK00252 865 alaS alanyl-tRNA synthetase; Reviewed 100.0
PRK01584 594 alanyl-tRNA synthetase; Provisional 100.0
PRK13902 900 alaS alanyl-tRNA synthetase; Provisional 99.97
KOG2105|consensus415 99.97
TIGR03683 902 A-tRNA_syn_arch alanyl-tRNA synthetase. This famil 99.97
PLN02837 614 threonine-tRNA ligase 99.92
PRK12305 575 thrS threonyl-tRNA synthetase; Reviewed 99.9
PLN02908 686 threonyl-tRNA synthetase 99.87
PRK00413 638 thrS threonyl-tRNA synthetase; Reviewed 99.86
PRK12444 639 threonyl-tRNA synthetase; Reviewed 99.85
TIGR00418 563 thrS threonyl-tRNA synthetase. This model represen 99.79
COG0441 589 ThrS Threonyl-tRNA synthetase [Translation, riboso 99.76
KOG1637|consensus 560 99.71
PF0797344 tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco 99.38
smart0086344 tRNA_SAD Threonyl and Alanyl tRNA synthetase secon 99.1
PRK14799 545 thrS threonyl-tRNA synthetase; Provisional 99.04
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 95.21
PRK09348283 glyQ glycyl-tRNA synthetase subunit alpha; Validat 94.63
TIGR00388293 glyQ glycyl-tRNA synthetase, tetrameric type, alph 93.29
cd00733279 GlyRS_alpha_core Class II Glycyl-tRNA synthetase ( 92.07
PRK14908 1000 glycyl-tRNA synthetase; Provisional 89.39
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 89.07
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 88.19
COG0752298 GlyQ Glycyl-tRNA synthetase, alpha subunit [Transl 88.07
PF02091284 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit 86.9
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 84.91
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 81.7
>KOG0188|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.6e-223  Score=1870.83  Aligned_cols=717  Identities=40%  Similarity=0.664  Sum_probs=667.2

Q ss_pred             cCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccccccccCCCCCCCCCccccccccccCCCCCCCCCC
Q psy6339          12 LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSCA   91 (925)
Q Consensus        12 ~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~flG~~~p~~~r~~~~QkCiR~gGKHnDld~V   91 (925)
                      ||++|||++||+||+ ++.|++|+||||||.+||||||+|||||||||+|||+ -.+++|++|+|||||+||||||||+|
T Consensus         2 ~ta~evR~tFldfF~-~k~H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt-~a~lkRa~NsQKCIRAGGKHNDLdDV   79 (895)
T KOG0188|consen    2 LTASEVRKTFLDFFK-SKHHKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT-MAKLKRAANSQKCIRAGGKHNDLDDV   79 (895)
T ss_pred             ccHHHHHHHHHHHHH-hcCceEeccCCcccCCCCeeEEeccchhhcchhhhhc-hhhhHhhhhhhhHHhccCCcCChhHh
Confidence            899999999999999 5889999999999999999999999999999999999 56799999999999999999999999


Q ss_pred             CCCCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHhcCCCCCccc
Q psy6339          92 GRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLELGVPRDHIK  171 (925)
Q Consensus        92 G~t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~~Gv~~~~I~  171 (925)
                      |+|.|||||||||||||||||||+|||.|||||||+ +||||+||||||||+||+.+|||+|.||++||+++|||++||+
T Consensus        80 GkD~yHhTfFEMlGNWSFGdYfK~Eac~~AwelLt~-vygi~~dRLYVtYF~Gde~~Gl~~D~E~r~iW~~~Gvp~srIL  158 (895)
T KOG0188|consen   80 GKDFYHHTFFEMLGNWSFGDYFKEEACAWAWELLTF-VYGIPTDRLYVTYFGGDEKLGLEPDLECREIWNELGVPDSRIL  158 (895)
T ss_pred             chhccccCchhhcCCCCcchHHHHHHHHHHHHHHHH-hhcCCCceEEEEEecCccccCCCCCcHHHHHHHHcCCChhhcc
Confidence            999999999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             ccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccccCCCCcccccchHHH
Q psy6339         172 KEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFER  251 (925)
Q Consensus       172 ~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~IDTGmGLER  251 (925)
                      +|+.+|||||||++||||||||||||+.++ ++++.+||.|+|+++||||||||||||++||+|.|||+|||||||||||
T Consensus       159 p~~~kDNFWEMGdtGPCGPCtEIHyDriG~-r~a~~LVN~ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGfER  237 (895)
T KOG0188|consen  159 PFGMKDNFWEMGDTGPCGPCTEIHYDRIGG-RDAVKLVNHDDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGFER  237 (895)
T ss_pred             CCccccchhhhcCCCCCCcchhhhhhhhcC-cchHHHhcCCCcCceeeeeeeeeeeccccCCccccCcccccccccCHHH
Confidence            999999999999999999999999999887 7888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCcccccccHHHHHHHHHHhCCCCCCCcccCCCCCCCCceEEEEecCccceeeeecCCccCCCc---hhHHH
Q psy6339         252 LVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDAT---AKLRN  328 (925)
Q Consensus       252 l~~vlqg~~snydtD~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rvIaDH~R~~~f~iaDGv~Psn~---~vlRr  328 (925)
                      |++|||+|.||||||+|+||+++|++.++++ |+|    ++.+.+|+||||+|||+||+++|||||++|+|+   |||||
T Consensus       238 LvsVlQnk~SNYDTDlFtPif~aiq~~~~~~-YtG----~d~d~~D~AyRVvADH~RtlTvalsDG~~Pdn~GrgyvLRR  312 (895)
T KOG0188|consen  238 LVSVLQNKTSNYDTDLFTPIFEAIQEGTGAR-YTG----EDADGIDTAYRVVADHARTLTVALSDGGVPDNTGRGYVLRR  312 (895)
T ss_pred             HHHHHhcccccccchhhHHHHHHHHHhcCCC-ccC----CccccchhhHHHHHHHhhhhheeeecCCCCCCCCChhHHHH
Confidence            9999999999999999999999999999998 998    345678999999999999999999999999999   49999


Q ss_pred             HHHHHHHHhHHhhccccccchHHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHHhhhhcccccccccchhh
Q psy6339         329 VVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQ  408 (925)
Q Consensus       329 ilRRa~r~~~~~~~~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~~~~~~  408 (925)
                      |||||+||++..++.++ +||.+|||+|++.||++||||+.+...|.+||..||+.|.+|+                   
T Consensus       313 ILRRavrya~e~l~~~~-g~~~~LVpvvv~~lgd~fPEl~~~~~~v~diineEE~~F~ktl-------------------  372 (895)
T KOG0188|consen  313 ILRRAVRYAHEKLNAPP-GFFSTLVPVVVETLGDAFPELKRDPQHVIDIINEEEAQFLKTL-------------------  372 (895)
T ss_pred             HHHHHHHHHHHHhCCCc-chhhhhhHHHHHHHhhhchhhhcCHHHHHHHhcHHHHHHHHHH-------------------
Confidence            99999999999999886 6899999999999999999999999999999999999999885                   


Q ss_pred             hccccchhHhhHHHHHHHHHhcCCCCCcCChhhhhHhhcccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHhhhc
Q psy6339         409 FNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAA  488 (925)
Q Consensus       409 ~~~~~~~~l~~g~~~l~~~~~~~~~~~~i~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~sr~~~~  488 (925)
                               ++|.++|++.+.++++++.|||++||.||||||||+|||++||+|+|++||+++|+++.++.+++|+.+..
T Consensus       373 ---------~rg~~~f~r~~~~~~~s~tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~Sk~~~~  443 (895)
T KOG0188|consen  373 ---------DRGRKLFDRVARELGSSKTIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAARQEAQEKSKGAGG  443 (895)
T ss_pred             ---------HHHHHHHHHHHHhcCCCCcCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHHHhccCC
Confidence                     45888888888888877899999999999999999999999999999999999999999988888887654


Q ss_pred             CCC-cccccccccCCCCcCCCCceeeeecCCCCccccccccceEEEEEeCCeeeecccccccccccCCCCcchhccccce
Q psy6339         489 SNV-PDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAW  567 (925)
Q Consensus       489 ~~~-~~~~~~~~~~~~~t~~~~k~~f~~~~~~~gY~~~~~~akVl~i~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~  567 (925)
                      .+. ...+.+ .+-+|+|+|++||+          ++..++++|+++..++..       |.++.   +|+        +
T Consensus       444 ~~~~i~ldvl-~el~p~TdDs~KY~----------~~~~~~~~il~l~~e~~~-------v~~~~---~g~--------~  494 (895)
T KOG0188|consen  444 GKLSIDLDVL-SELVPPTDDSFKYN----------EFGVCKTRILALYREDQF-------VESIP---KGQ--------E  494 (895)
T ss_pred             CCCcccHHHH-HhhCCCCCCccccc----------cCccchhhhhhhhcCCce-------eeecC---CCc--------e
Confidence            321 111111 11279999999863          346899999999988776       66654   677        9


Q ss_pred             EEEEeecceeeeCCCCCcccEEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecccccCCCCeEEEEEchhchHHHHH
Q psy6339         568 VGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMR  647 (925)
Q Consensus       568 ~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~V~~V~k~~g~ivH~~~~~~~~~l~~G~~V~~~VD~~rR~~~mr  647 (925)
                      +.||||+|+||+|+|||.+|+|.|...+.+.  ..+.|..++. +|+|+|.+...  +.|++|++|.+.+|.+||..+|+
T Consensus       495 ~givldktnFYaEqGGQ~~D~G~lv~~~~~~--~~fnV~~~~~-gg~vvh~g~l~--~~l~vgdqv~~~~De~rR~~im~  569 (895)
T KOG0188|consen  495 CGIVLDKTNFYAEQGGQIYDTGKLVIDGDED--FVFNVKRVQV-GGYVVHIGVLE--GDLSVGDQVELHVDEERRQLIMR  569 (895)
T ss_pred             EEEEeecceeehhcCCcccccceEEEecCcc--ceeehhhccc-CCEEEEEeeec--cccccchhHHHHhhHHHHHHHhh
Confidence            9999999999999999999999999877432  3566666666 89999999873  68999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHhhcceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccccccccc
Q psy6339         648 AHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHL  727 (925)
Q Consensus       648 ~HTAtHLL~aAL~~vl~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~g~  727 (925)
                      +|||||||++|||+++..+.|+||+|.||++||||++ ..++|.+|++++|+.+|++|.++.+|...++++++|++..|+
T Consensus       570 nHTaTHlLN~aLr~~l~~t~QkGSlV~pdklRfDf~~-k~~lt~eql~~vE~~~ne~I~~~~~V~~~e~~l~~ak~i~gl  648 (895)
T KOG0188|consen  570 NHTATHLLNFALRQVLKGTDQKGSLVAPDKLRFDFST-KGALTKEQLKKVEDKINEFIQKNAPVYAKELPLAEAKKIPGL  648 (895)
T ss_pred             cchHHHHHHHHHHHhcccccccccccChhHeeeeccc-CCCCCHHHHHHHHHHHHHHHhcCCceEEEecCHHHHhcCCCc
Confidence            9999999999999999888999999999999999996 456999999999999999999999999999999999999999


Q ss_pred             ccccCCcCCCcEEEEEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEcchhHHHHHHHHHH
Q psy6339         728 TVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGDSSKAAVENGKH  802 (925)
Q Consensus       728 ~~l~geky~~~vRVV~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~~A~~~~~~~ee  802 (925)
                      ++.|+|.||+.||||.+|.. ...++|+|||||+.|||+||.|.|++++++++|+|||.+|||++|.+++..+++
T Consensus       649 r~v~~E~YPdpVRVVsvg~~-~~~svE~CgGTH~~~t~~i~~fvI~se~~iakgirRivavTG~eA~~a~~~a~~  722 (895)
T KOG0188|consen  649 RAVFDEVYPDPVRVVSVGAG-QLTSVEFCGGTHLTNTSHIGDFVIVSEEGIAKGIRRIVAVTGKEAQEALRLAED  722 (895)
T ss_pred             ccccCCccCCceEEEEeccc-cccceeecCCcccccccccceEEEechhhhhhceeEEEEeccHHHHHHHHHHHH
Confidence            99999999999999999853 347999999999999999999999999999999999999999999999998874

>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02900 alanyl-tRNA synthetase Back     alignment and domain information
>TIGR00344 alaS alanine--tRNA ligase Back     alignment and domain information
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK01584 alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase Back     alignment and domain information
>PRK13902 alaS alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>PLN02961 alanine-tRNA ligase Back     alignment and domain information
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] Back     alignment and domain information
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02900 alanyl-tRNA synthetase Back     alignment and domain information
>KOG0188|consensus Back     alignment and domain information
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00344 alaS alanine--tRNA ligase Back     alignment and domain information
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK01584 alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK13902 alaS alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2105|consensus Back     alignment and domain information
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1637|consensus Back     alignment and domain information
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer Back     alignment and domain information
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit Back     alignment and domain information
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain Back     alignment and domain information
>PRK14908 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query925
1yfr_A465 Crystal Structure Of Alanyl-Trna Synthetase In Comp 2e-79
1yfr_A 465 Crystal Structure Of Alanyl-Trna Synthetase In Comp 5e-27
3htz_A464 Crystal Structure Of The Catalytic Fragment Of Alan 2e-79
3htz_A 464 Crystal Structure Of The Catalytic Fragment Of Alan 5e-27
1riq_A465 The Crystal Structure Of The Catalytic Fragment Of 2e-74
1riq_A 465 The Crystal Structure Of The Catalytic Fragment Of 2e-25
3hxu_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 3e-71
3hxu_A 441 Crystal Structure Of Catalytic Fragment Of E. Coli 1e-24
3hxz_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 2e-70
3hxz_A 441 Crystal Structure Of Catalytic Fragment Of E. Coli 9e-25
2zzf_A752 Crystal Structure Of Alanyl-Trna Synthetase Without 4e-23
2zze_A752 Crystal Structure Of Alanyl-Trna Synthetase Without 7e-16
2ztg_A739 Crystal Structure Of Archaeoglobus Fulgidus Alanyl- 2e-05
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 Back     alignment and structure 
Iteration: 1

 Score =  293 bits (751), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 180/485 (37%), Positives = 263/485 (54%), Gaps = 73/485 (15%)
Query: 12  LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
           L +  IR  FL +F   +GHT VKS+P+VP  D ++ FVN+GM  FKNVFLGL   PY R
Sbjct: 3   LSAHEIRELFLSFF-EKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKR 61
Query: 72  VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
             + QKC+RV GKHNDL   G  S HHTFFEMLGN+SF DY+K++A   A EF+T+  + 
Sbjct: 62  ATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLK 120
Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLE-LGVPRDHIKKEGMKCNFWEMGSTGPCGY 190
           LP ++LY + +          DEE   IW E +G+P + I + G + NFW+MG  GPCG 
Sbjct: 121 LPKEKLYVSVY--------KDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGP 172
Query: 191 SSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFE 250
           SSEI+ D +GE      R        +EIWN+VF+ + R     + PL    IDTG+G E
Sbjct: 173 SSEIYVD-RGEEYEGDER-------YLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 224
Query: 251 RLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMI 310
           R+ ++LQ K S ++ D+  PL++  E+VSG K YG  F T      D + R+++D+ R I
Sbjct: 225 RIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGEKFET------DVALRVIADHLRAI 277
Query: 311 TVALADNMFPDATAK---LRNVVRDAL-----LISEDVFKVKQGKLVKELSYNIAEILGD 362
           T A++D + P    +   +R ++R A+     L  E+ F  K   LV        +I+ +
Sbjct: 278 TFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENPFLYKGVDLV-------VDIMKE 330
Query: 363 VYPEIQDSINKIQ-LILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGV 421
            YPE++ S   ++ ++ GEE R    L+                              G+
Sbjct: 331 PYPELELSREFVKGIVKGEEKRFIKTLKA-----------------------------GM 361
Query: 422 KYLTK--QLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNEL 479
           +Y+ +  Q A +     +SG   FT YDTYG   ++I E+A  K L +  E F+ +L E 
Sbjct: 362 EYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQ 421
Query: 480 KERSK 484
           +ER++
Sbjct: 422 RERAR 426
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 Back     alignment and structure
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 Back     alignment and structure
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 Back     alignment and structure
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 Back     alignment and structure
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 Back     alignment and structure
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 Back     alignment and structure
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 Back     alignment and structure
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 Back     alignment and structure
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 Back     alignment and structure
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752 Back     alignment and structure
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain In Lysine-Methylated Form Length = 752 Back     alignment and structure
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking The C-Terminal Dimerization Domain In Complex With Ala-Sa Length = 739 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query925
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 1e-138
3hy0_A 441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 1e-47
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 1e-135
1yfs_A 465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 1e-45
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 1e-115
2ztg_A 739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 2e-32
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 6e-87
2zze_A 752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 2e-21
3kew_A241 DHHA1 domain protein; structural genomics, PSI-2, 5e-30
2e1b_A216 PH0108, 216AA long hypothetical alanyl-tRNA synthe 7e-23
1v4p_A157 Alanyl-tRNA synthetase; alanine-tRNA ligase, riken 6e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 Back     alignment and structure
 Score =  420 bits (1081), Expect = e-138
 Identities = 169/494 (34%), Positives = 251/494 (50%), Gaps = 82/494 (16%)

Query: 14  SKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVA 73
           +  IR +FLD+F +++GH +V SS +VP+ D ++ F N+GM QFK+VFLGL    Y R  
Sbjct: 4   TAEIRQAFLDFF-HSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 62

Query: 74  NSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPV-SL 132
            SQ+CVR GGKHNDL   G  + HHTFFEMLGN+SF DY+K DA   A   LT     +L
Sbjct: 63  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFAL 122

Query: 133 PLDRLYFTYFGGSDQYGLPCDEETRDIWL-ELGVPRDHIKKEGMKC-------NFWEMGS 184
           P +RL+ T +          D+E  +IW  E+G+PR+ I + G          NFW+MG 
Sbjct: 123 PKERLWVTVY--------ESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGD 174

Query: 185 TGPCGYSSEIHYDM-----KGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLS 239
           TGPCG  +EI YD       G P S       D +  IEIWNIVF+   R +  T+ PL 
Sbjct: 175 TGPCGPCTEIFYDHGDHIWGGPPGS----PEEDGDRYIEIWNIVFMQFNRQADGTMEPLP 230

Query: 240 KNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTS 299
           K  +DT +G ER+  +LQ+  S YD DLF  L++ + KV+GA               + S
Sbjct: 231 KPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLS-----------NKS 279

Query: 300 YRMLSDYSRMITVALADNMFPDATAK---LRNVVRDA-----LLISEDVFKVKQGKLVKE 351
            R+++D+ R     +AD + P    +   LR ++R A     +L +++ F  K   LV  
Sbjct: 280 LRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYK---LVGP 336

Query: 352 LSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNI 411
           L     +++G    +++    +++ +L  E                       E EQF  
Sbjct: 337 L----IDVMGSAGEDLKRQQAQVEQVLKTE-----------------------E-EQFAR 368

Query: 412 MEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEA 471
             E GL L    L ++LA+      + G+ AF LYDTYG   ++  ++   + + +    
Sbjct: 369 TLERGLAL----LDEELAKLSG-DTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAG 423

Query: 472 FEQKLNELKERSKA 485
           FE  + E + R++ 
Sbjct: 424 FEAAMEEQRRRARE 437
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 Back     alignment and structure
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 Back     alignment and structure
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 Back     alignment and structure
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241 Back     alignment and structure
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216 Back     alignment and structure
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query925
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 100.0
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 100.0
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 100.0
3kew_A241 DHHA1 domain protein; structural genomics, PSI-2, 100.0
2e1b_A216 PH0108, 216AA long hypothetical alanyl-tRNA synthe 100.0
3hy0_A 441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1yfs_A 465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 100.0
2zze_A 752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 100.0
2ztg_A 739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 99.95
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 99.93
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 99.93
1tke_A224 Threonyl-tRNA synthetase; ligase; 1.46A {Escherich 99.93
1v4p_A157 Alanyl-tRNA synthetase; alanine-tRNA ligase, riken 99.92
3rf1_A311 Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA 90.67
1j5w_A298 Glycyl-tRNA synthetase alpha chain; structural gen 86.98
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Back     alignment and structure
Probab=100.00  E-value=1.7e-189  Score=1673.77  Aligned_cols=630  Identities=23%  Similarity=0.368  Sum_probs=558.2

Q ss_pred             cccCHHHHHHHHHHhcccCCC---cEEeCCCCCCcCCCCccceecccccccccccc-CCCCCCCCCccccccccccCCCC
Q psy6339          10 VRLCSKSIRSSFLDYFCNTQG---HTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFL-GLTPAPYPRVANSQKCVRVGGKH   85 (925)
Q Consensus        10 ~~~~~~eiR~~Fl~fF~~~~g---H~~v~ssslvp~~dptllF~nAGM~qFk~~fl-G~~~p~~~r~~~~QkCiR~gGKH   85 (925)
                      +.||++|||++||+||+ +||   |++||||||||+|||||||||||||||||||+ |+++||++|+||||||||+    
T Consensus        55 ~~~~~~eiR~~fl~fF~-~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp~~r~~~~QkCiR~----  129 (752)
T 2zze_A           55 RXYTLDEMREXFLRFFE-XHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRF----  129 (752)
T ss_dssp             SCCCHHHHHHHHHHHHH-TCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCSSSSEEEEEEEECC----
T ss_pred             ccCCHHHHHHHHHHHHh-ccCCCcceEEeccCcccCCCCCeeeeecchhhhhHhhcCCCcCCCCCCccccccceec----
Confidence            67999999999999999 699   99999999999999999999999999999997 9999999999999999997    


Q ss_pred             CCCCCCCCCCCcchhhhhhcccccC-----cccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHH
Q psy6339          86 NDLSCAGRDSYHHTFFEMLGNWSFN-----DYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIW  160 (925)
Q Consensus        86 nDld~VG~t~rHhTfFeMLGn~SFg-----dYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW  160 (925)
                      |||||||+|+|||||||||||||||     ||||+|||+|||||||+ +||||++||+                      
T Consensus       130 ~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~-~~gl~~~ri~----------------------  186 (752)
T 2zze_A          130 TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTK-ELXMXPEDIT----------------------  186 (752)
T ss_dssp             TTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHH-TSCCCGGGEE----------------------
T ss_pred             CcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhh-hhhcchhhee----------------------
Confidence            7999999999999999999999999     99999999999999999 8999888873                      


Q ss_pred             HhcCCCCCcccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeeccccc-------------
Q psy6339         161 LELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISH-------------  227 (925)
Q Consensus       161 ~~~Gv~~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy-------------  227 (925)
                                    .+||||+||  ||||||||||||.                  |||||||||||             
T Consensus       187 --------------~~dNfW~~G--GpcGPcsEI~~dg------------------lEiwNlVFmq~~~~~~~~~~~~~~  232 (752)
T 2zze_A          187 --------------FKENPWAGG--GNAGPAFEVLYRG------------------LEVATLVFMQYXXAPENAPQDQVV  232 (752)
T ss_dssp             --------------EEECCEEET--TEEECEEEEEETT------------------EEEEEEEEEEEEECCTTCCSCCEE
T ss_pred             --------------eccCcccCC--CCCCCceeEEECC------------------Eeeeeeeeeeeccccccccccchh
Confidence                          178999999  9999999999983                  99999999999             


Q ss_pred             ccCCCCccccCCCCcccccchHHHHHHHHhCCCCcccccccHHHHHHHHHHhCCCC-----------CCCcccCCCCCCC
Q psy6339         228 KRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKP-----------YGRTFTTSNRTDL  296 (925)
Q Consensus       228 ~r~~~g~l~~Lp~k~IDTGmGLERl~~vlqg~~snydtD~f~pli~~i~~~~~~~~-----------y~g~~~~~~~~~~  296 (925)
                      || ++|+|+|||+||||||||||||||||||++||||| +|.|||++|++++|+++           |.|.++.++...+
T Consensus       233 ~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~~~~~~a~~~g~~~~~~~~~~  310 (752)
T 2zze_A          233 VI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDLGDL  310 (752)
T ss_dssp             ET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCCSSSSSCH
T ss_pred             cc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCCccchhhhhhhhhccccCCccchhhH
Confidence            88 69999999999999999999999999999999999 99999999999999862           3343332211111


Q ss_pred             ------------------------CceEEEEecCccceeeeecCCccCCCc---hhHHHHHHHHHHHhHHhhccccccch
Q psy6339         297 ------------------------DTSYRMLSDYSRMITVALADNMFPDAT---AKLRNVVRDALLISEDVFKVKQGKLV  349 (925)
Q Consensus       297 ------------------------~~~~rvIaDH~R~~~f~iaDGv~Psn~---~vlRrilRRa~r~~~~~~~~~~~~fl  349 (925)
                                              +.++||||||+||++||||||++|||+   ||||||||||+|+|++++...  + |
T Consensus       311 ~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~--~-l  387 (752)
T 2zze_A          311 RYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLRELGLEV--P-L  387 (752)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHHHHTTCCC--C-H
T ss_pred             HHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHHHHHHHHHHHHhCCCc--c-h
Confidence                                    458899999999999999999999999   599999999999998765444  7 9


Q ss_pred             HHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHHhhhhcccccccccchhhhccccchhHhhHHHHHHHHHh
Q psy6339         350 KELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLA  429 (925)
Q Consensus       350 ~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~l~~~~~  429 (925)
                      ++||+.|++.|+++||||.++++.|++||+.||++|.+|+                            ++|+++|++.++
T Consensus       388 ~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl----------------------------~~G~~~l~~~~~  439 (752)
T 2zze_A          388 SEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETL----------------------------RRGSDLVRREIA  439 (752)
T ss_dssp             HHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999985                            457888888776


Q ss_pred             cCC--CCCcCChhhhhHhhcccCCCHHHHHHHHHHcCCccCHH-HHHHHHHHHHHHHHhhhcCCCcccccccccCCCCcC
Q psy6339         430 RDP--SITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHE-AFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTD  506 (925)
Q Consensus       430 ~~~--~~~~i~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~t~  506 (925)
                      +++  ..+.|||++||+||||||||+|||++||+|+|++||++ +|+++|++||+++|++......+..  .....|+  
T Consensus       440 ~~~~~~~~~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~~~~~~~~--~~~~~~~--  515 (752)
T 2zze_A          440 KLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKGEELVDFE--LLKDLPD--  515 (752)
T ss_dssp             HHHHHSCSCCCHHHHHHHHHHHCCCHHHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC-------CCCSS--SSSSSCC--
T ss_pred             HhhhcCCCccCHHHHHHHHhccCCCHHHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhcccccchhhH--HhccCCC--
Confidence            542  12579999999999999999999999999999999998 8999999999998865211110101  1112333  


Q ss_pred             CCCceeeeecCCCCcccc---ccccceEEEEEeCCeeeecccccccccccCCCCcchhccccceEEEEeecceeeeCCCC
Q psy6339         507 DKYKYDYHYDTNSKRYTF---PCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGG  583 (925)
Q Consensus       507 ~~~k~~f~~~~~~~gY~~---~~~~akVl~i~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~vvLD~T~FYpegGG  583 (925)
                          ++|.      +|+.   .+++|+|+++..                               ..||||+|||||||||
T Consensus       516 ----T~~l------~Y~~~yl~~~~a~Vl~i~~-------------------------------~~VVLD~TpFYpEgGG  554 (752)
T 2zze_A          516 ----TRRL------YYEDPFMXEFDAXVLRVIX-------------------------------DWVILDATAFYPEGGG  554 (752)
T ss_dssp             ----CEEH------HHHCTTCCEEEEEEEEEET-------------------------------TEEEESEECSCCSBTT
T ss_pred             ----ceee------cccCCccceEEEEEEEEEc-------------------------------CEEEEeCCCCCCCCCC
Confidence                3444      3433   578999999861                               2599999999999999


Q ss_pred             CcccEEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecccccCCCCeEEEEEchhchHHHHHHhHHHHHHHHHHHHhh
Q psy6339         584 QIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL  663 (925)
Q Consensus       584 Q~~D~G~I~~~~~~~~~~~~~V~~V~k~~g~ivH~~~~~~~~~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aAL~~vl  663 (925)
                      ||+|+|+|..++     ..+.|.+|++.+|.++|.+..  .+.|++|++|.++|||+||+++|++|||+|||++||++++
T Consensus       555 Q~~D~G~I~~~g-----~~~~V~dv~k~~g~ivH~~~~--~~~l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vl  627 (752)
T 2zze_A          555 QPYDTGVLIVNG-----REVXVTNVQXVGXVIIHXVED--PGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVL  627 (752)
T ss_dssp             BCCCCEEEEETT-----EEEEEEEEEEETTEEEEEESC--GGGCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCC-----EEEEEEeeeecCcEEEEeccc--cCccCcCCeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence            999999998644     478999999999999999975  2578999999999999999999999999999999999999


Q ss_pred             -cceeeccccccCCceEEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEcCcccccccccccccc-CCcCCCcEEE
Q psy6339         664 -TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIANQVQVDRRHMRASELPFLTHLTVIP-GEIYPDDVIL  741 (925)
Q Consensus       664 -~~v~Q~Gs~v~~d~~r~Df~~~~~~ls~eel~~IE~~vNe~I~~~~pV~~~~~~~eEA~~~~g~~~l~-geky~~~vRV  741 (925)
                       .+++|+|+++.++++||||++ .+++|++++++||+.||++|++++||++.+++++||.+..+...++ +++|++.|||
T Consensus       628 G~~v~q~Gs~v~~d~~rfDFs~-~~~lt~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~~~lf~~ge~ygd~VRV  706 (752)
T 2zze_A          628 GRHVWQAGSQLTTDWARLDISH-YXRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRV  706 (752)
T ss_dssp             CTTCEEEEEEECSSCEEEEEEC-SSCCCHHHHHHHHHHHHHHHHHTCBEEEEEEEHHHHHHHHCGGGCSSCCCCSSEEEE
T ss_pred             CCceeeecCcccCCceEEEEeC-CCCCCHHHHHHHHHHHHHHHHhCCccceeecCHHHHhhcchhhhhcCCCCCCCeEEE
Confidence             788999999999999999997 4789999999999999999999999999999999997776554332 7888889999


Q ss_pred             EEeCCCCCcccccccCCCCCCCCCCcccEEEEeeeecCCCeEEEEEEcch
Q psy6339         742 IDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGD  791 (925)
Q Consensus       742 V~Ig~~~~~~~~elCGGTHV~nTgeIG~fkI~~~~~~~~GvrRI~~vtG~  791 (925)
                      |+||+    +|+++||||||+|||+||.|+|++++++++|++||+++||.
T Consensus       707 V~IGd----~svelCGGTHV~nTgeIG~fKIls~s~i~~GvrRIeavtG~  752 (752)
T 2zze_A          707 VXIED----WDVQACGGTHLPSTGLVGPIXILRTERIQDGVERIIFACGE  752 (752)
T ss_dssp             EEETT----TEEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEECC
T ss_pred             EEECC----ceeCCCCCCccCCHhHccEEEEEEEEEEcCCEEEEEEEeCC
Confidence            99999    89999999999999999999999999999999999999994
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Back     alignment and structure
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Back     alignment and structure
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Back     alignment and structure
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Back     alignment and structure
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Back     alignment and structure
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Back     alignment and structure
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Back     alignment and structure
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A* Back     alignment and structure
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 925
d1riqa2236 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) 8e-69
d1riqa2236 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) 4e-25
d1riqa1221 a.203.1.1 (A:237-457) Putative anticodon-binding d 1e-16
d1v4pa_151 d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo 6e-13
d2e1ba2129 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C 9e-13
d1nyra3179 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR 3e-07
d2e1ba187 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t 5e-04
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Alanyl-tRNA synthetase (AlaRS)
species: Aquifex aeolicus [TaxId: 63363]

 Score =  226 bits (577), Expect = 8e-69
 Identities = 113/253 (44%), Positives = 151/253 (59%), Gaps = 19/253 (7%)

Query: 12  LCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPR 71
           L +  IR  FL +F   +GHT VKS+P+VP  D ++ FVN+GM  FKNVFLGL   PY R
Sbjct: 2   LSAHEIRELFLSFF-EKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKR 60

Query: 72  VANSQKCVRVGGKHNDLSCAGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVS 131
             + QKC+RV GKHNDL   G  S HHTFFEMLGN+SF DY+K++A   A EF+T+  + 
Sbjct: 61  ATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLK 119

Query: 132 LPLDRLYFTYFGGSDQYGLPCDEETRDIWLE-LGVPRDHIKKEGMKCNFWEMGSTGPCGY 190
           LP ++LY + +          DEE   IW E +G+P + I + G + NFW+MG  GPCG 
Sbjct: 120 LPKEKLYVSVY--------KDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGP 171

Query: 191 SSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFE 250
           SSEI+ D                   +EIWN+VF+ + R     + PL    IDTG+G E
Sbjct: 172 SSEIYVDRG--------EEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 223

Query: 251 RLVTILQNKTSTY 263
           R+ ++LQ K S +
Sbjct: 224 RIASVLQGKNSNF 236
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 Back     information, alignment and structure
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 221 Back     information, alignment and structure
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151 Back     information, alignment and structure
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129 Back     information, alignment and structure
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179 Back     information, alignment and structure
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query925
d1riqa2236 Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [ 100.0
d1riqa1221 Putative anticodon-binding domain of alanyl-tRNA s 100.0
d1riqa2 236 Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [ 100.0
d2e1ba2129 AlaX-M trans-editing enzyme, C-terminal domain {Py 99.97
d1v4pa_151 Hypothetical protein PH0574 {Archaeon Pyrococcus h 99.96
d1nyra3179 Threonyl-tRNA synthetase (ThrRS), second 'addition 99.94
d1tkea2162 Threonyl-tRNA synthetase (ThrRS), second 'addition 99.83
d2e1ba187 AlaX-M trans-editing enzyme, N-terminal domain {Py 99.51
d1j5wa_281 Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermo 95.65
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Alanyl-tRNA synthetase (AlaRS)
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=2.4e-110  Score=865.37  Aligned_cols=235  Identities=49%  Similarity=0.884  Sum_probs=228.1

Q ss_pred             ccCHHHHHHHHHHhcccCCCcEEeCCCCCCcCCCCccceeccccccccccccCCCCCCCCCccccccccccCCCCCCCCC
Q psy6339          11 RLCSKSIRSSFLDYFCNTQGHTLVKSSPIVPYGDDSIAFVNSGMCQFKNVFLGLTPAPYPRVANSQKCVRVGGKHNDLSC   90 (925)
Q Consensus        11 ~~~~~eiR~~Fl~fF~~~~gH~~v~ssslvp~~dptllF~nAGM~qFk~~flG~~~p~~~r~~~~QkCiR~gGKHnDld~   90 (925)
                      .|+++|||++||+||+ +|||++||||||||+||||||||||||+||||||+|+++||++|+|++|||||+|||||||||
T Consensus         1 ~mt~~eiR~~Fl~FF~-~~gH~~v~s~slvp~~DptlLFtnAGM~~Fkp~flG~~~p~~~r~~~~QkCiR~~gk~nDld~   79 (236)
T d1riqa2           1 SLSAHEIRELFLSFFE-KKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQ   79 (236)
T ss_dssp             CCCHHHHHHHHHHHHH-HTTCEECCCCCSSCTTCTTCSSCCSTTGGGHHHHTTSSCCSCSEEEEEEEEECEETTEECTTT
T ss_pred             CCCHHHHHHHHHHHHH-hCCCEEcCCCCcccCCCCCeeeecccchhhhhhhcCccccCCCccccccccccccCccchhhh
Confidence            4899999999999999 599999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcchhhhhhcccccCcccHHHHHHHHHhhcccCCCCCCCCceEEEEEcCCCCCCCCCcHHHHHHHHh-cCCCCCc
Q psy6339          91 AGRDSYHHTFFEMLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETRDIWLE-LGVPRDH  169 (925)
Q Consensus        91 VG~t~rHhTfFeMLGn~SFgdYfK~eai~~awe~Lt~~~l~l~~~rl~vT~~~gd~~~gl~~D~E~~~iW~~-~Gv~~~~  169 (925)
                      ||+|+|||||||||||||||||||+|||.|||||||+ +|||||+|||||||++        |+||+++|.+ +|||++|
T Consensus        80 VG~t~rH~TfFEMLGn~SFgdYfK~eai~~awe~lt~-~l~l~~~rl~vtv~~~--------D~e~~~~w~~~~gi~~~r  150 (236)
T d1riqa2          80 VGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTE-VLKLPKEKLYVSVYKD--------DEEAYRIWNEHIGIPSER  150 (236)
T ss_dssp             TTTSSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHH-TSCCCGGGEEEEEETT--------CHHHHHHHHTTTCCCGGG
T ss_pred             cCCcccchhhhhhccccccCchhHHHHHHHHHHHHHH-HhccCccceEEEeecC--------cHHHHHHHHhhcCccccc
Confidence            9999999999999999999999999999999999999 9999999999999984        8999999986 8999999


Q ss_pred             ccccCCccCcccCCCCCCCcCceEEEeecCCCCCCcccccCCCCCceEEeeeecccccccCCCCccccCCCCcccccchH
Q psy6339         170 IKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGF  249 (925)
Q Consensus       170 I~~~~~~dNfW~~G~~GpcGPcsEI~~d~~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~k~IDTGmGL  249 (925)
                      |++++.+||||+||++||||||||||||+|+.+        ++++|||||||||||||+|+++|++.|||+|+|||||||
T Consensus       151 I~~~~~~dNfW~~g~~GpcGPcsEi~yd~g~~~--------~~~~r~lEIwNlVFmqy~~~~~G~~~~L~~k~IDTGmGL  222 (236)
T d1riqa2         151 IWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEY--------EGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGL  222 (236)
T ss_dssp             EEEECHHHHEEESSSSEEEEEEEEEEEECCTTS--------CHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEH
T ss_pred             ceecCCCCCccccCCCCCCCcceeEEEcccccc--------CCCCceeeeeeeeheeeeecCCCccccCCCCcccCCccH
Confidence            999999999999999999999999999998764        245799999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCcc
Q psy6339         250 ERLVTILQNKTSTY  263 (925)
Q Consensus       250 ERl~~vlqg~~sny  263 (925)
                      |||||||||++|||
T Consensus       223 ERi~~vlqg~~s~y  236 (236)
T d1riqa2         223 ERIASVLQGKNSNF  236 (236)
T ss_dssp             HHHHHHHTTCSSGG
T ss_pred             HHHHHHHcCCCCCC
Confidence            99999999999998
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure