| Protein ID Link to complete analysis report |
Lenth Link to complete analysis report |
Similarity with COG COG1097 |
All predicted COG clusters |
|---|---|---|---|
| 1g000176m | 1924 | hhsearch probability: 95.55 Identity: 16% subject length: 239 Length of aligned reigon: 103 Coverage over query: 542-656 Coverage over subject: 29-138 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG3063, PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] COG5107, RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] COG2183, Tex Transcriptional accessory protein [Transcription] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG5010, TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] COG3071, HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG0457, NrfG FOG: TPR repeat [General function prediction only] COG5191, Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] COG4700, Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] COG3898, Uncharacterized membrane-bound protein [Function unknown] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG4105, ComL DNA uptake lipoprotein [General function prediction only] COG1729, Uncharacterized protein conserved in bacteria [Function unknown] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG4785, NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] COG0557, VacB Exoribonuclease R [Transcription] |
| 1g000173m | 1935 | hhsearch probability: 95.71 Identity: 16% subject length: 239 Length of aligned reigon: 103 Coverage over query: 542-656 Coverage over subject: 29-138 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG3063, PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] COG5107, RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] COG2183, Tex Transcriptional accessory protein [Transcription] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG3071, HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] COG5010, TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] COG0457, NrfG FOG: TPR repeat [General function prediction only] COG5191, Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG4700, Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] COG3898, Uncharacterized membrane-bound protein [Function unknown] COG1729, Uncharacterized protein conserved in bacteria [Function unknown] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG4105, ComL DNA uptake lipoprotein [General function prediction only] COG4785, NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] COG0557, VacB Exoribonuclease R [Transcription] |
| 1g000236m | 1810 | hhsearch probability: 96.22 Identity: 16% subject length: 239 Length of aligned reigon: 103 Coverage over query: 417-531 Coverage over subject: 29-138 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG3063, PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] COG5107, RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] COG2183, Tex Transcriptional accessory protein [Transcription] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG3071, HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] COG5010, TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] COG5191, Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] COG0457, NrfG FOG: TPR repeat [General function prediction only] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG4700, Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] COG1729, Uncharacterized protein conserved in bacteria [Function unknown] COG3898, Uncharacterized membrane-bound protein [Function unknown] COG4105, ComL DNA uptake lipoprotein [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG4785, NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] COG0557, VacB Exoribonuclease R [Transcription] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1747, Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] |
| 1g000242m | 1801 | hhsearch probability: 96.30 Identity: 16% subject length: 239 Length of aligned reigon: 103 Coverage over query: 408-522 Coverage over subject: 29-138 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG3063, PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] COG5107, RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] COG2183, Tex Transcriptional accessory protein [Transcription] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG3071, HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] COG5010, TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] COG5191, Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG0457, NrfG FOG: TPR repeat [General function prediction only] COG4700, Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] COG3898, Uncharacterized membrane-bound protein [Function unknown] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1729, Uncharacterized protein conserved in bacteria [Function unknown] COG4785, NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] COG4105, ComL DNA uptake lipoprotein [General function prediction only] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] COG0557, VacB Exoribonuclease R [Transcription] |
| 1g001046m | 1176 | hhsearch probability: 96.83 Identity: 23% subject length: 239 Length of aligned reigon: 73 Coverage over query: 220-294 Coverage over subject: 61-138 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG4889, Predicted helicase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] |
| 1g000227m | 1826 | hhsearch probability: 95.70 Identity: 16% subject length: 239 Length of aligned reigon: 103 Coverage over query: 542-656 Coverage over subject: 29-138 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG2183, Tex Transcriptional accessory protein [Transcription] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG3063, PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] COG5191, Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] COG5010, TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] COG0557, VacB Exoribonuclease R [Transcription] COG5107, RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] COG3071, HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] |
| 1g002054m | 974 | hhsearch probability: 95.29 Identity: 22% subject length: 239 Length of aligned reigon: 65 Coverage over query: 909-973 Coverage over subject: 63-138 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG0689, Rph RNase PH [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG2123, RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG1530, CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] |
| 1g040243m | 797 | hhsearch probability: 90.65 Identity: 20% subject length: 239 Length of aligned reigon: 86 Coverage over query: 245-359 Coverage over subject: 140-226 |
COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG0724, RNA-binding proteins (RRM domain) [General function prediction only] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG5175, MOT2 Transcriptional repressor [Transcription] COG5082, AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] |
| 1g021034m | 318 | hhsearch probability: 96.19 Identity: 30% subject length: 239 Length of aligned reigon: 57 Coverage over query: 262-318 Coverage over subject: 62-123 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG1530, CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis] |
| 1g000449m | 1497 | hhsearch probability: 95.85 Identity: 23% subject length: 239 Length of aligned reigon: 74 Coverage over query: 760-834 Coverage over subject: 63-140 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] |
| 1g015066m | 414 | hhsearch probability: 96.84 Identity: 22% subject length: 239 Length of aligned reigon: 74 Coverage over query: 95-170 Coverage over subject: 60-137 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG1530, CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis] |
| 1g001115m | 1152 | hhsearch probability: 95.74 Identity: 23% subject length: 239 Length of aligned reigon: 73 Coverage over query: 760-833 Coverage over subject: 63-139 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] |
| 1g005707m | 681 | hhsearch probability: 96.99 Identity: 24% subject length: 239 Length of aligned reigon: 80 Coverage over query: 261-340 Coverage over subject: 63-145 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG0557, VacB Exoribonuclease R [Transcription] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1530, CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis] |
| 1g022938m | 289 | hhsearch probability: 96.89 Identity: 29% subject length: 239 Length of aligned reigon: 69 Coverage over query: 186-260 Coverage over subject: 62-139 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] |
| 1g011538m | 483 | hhsearch probability: 97.43 Identity: 21% subject length: 239 Length of aligned reigon: 80 Coverage over query: 167-280 Coverage over subject: 59-138 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG0557, VacB Exoribonuclease R [Transcription] COG1530, CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis] |
| 1g010232m | 514 | hhsearch probability: 97.41 Identity: 21% subject length: 239 Length of aligned reigon: 80 Coverage over query: 167-280 Coverage over subject: 59-138 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG0557, VacB Exoribonuclease R [Transcription] COG1530, CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis] |
| 1g024995m | 259 | hhsearch probability: 97.40 Identity: 27% subject length: 239 Length of aligned reigon: 71 Coverage over query: 54-130 Coverage over subject: 60-139 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG2183, Tex Transcriptional accessory protein [Transcription] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] |
| 1g026737m | 234 | hhsearch probability: 97.50 Identity: 27% subject length: 239 Length of aligned reigon: 71 Coverage over query: 54-130 Coverage over subject: 60-139 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG2183, Tex Transcriptional accessory protein [Transcription] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] |
| 1g026794m | 233 | hhsearch probability: 97.33 Identity: 23% subject length: 239 Length of aligned reigon: 98 Coverage over query: 22-130 Coverage over subject: 32-139 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG2183, Tex Transcriptional accessory protein [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] |
| 1g002487m | 916 | hhsearch probability: 97.66 Identity: 27% subject length: 239 Length of aligned reigon: 89 Coverage over query: 760-857 Coverage over subject: 61-153 |
COG0689, Rph RNase PH [Translation, ribosomal structure and biogenesis] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG2123, RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1530, CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] |
| 1g003942m | 784 | hhsearch probability: 90.51 Identity: 25% subject length: 239 Length of aligned reigon: 48 Coverage over query: 297-354 Coverage over subject: 147-194 |
COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG0195, NusA Transcription elongation factor [Transcription] COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only] COG5166, Uncharacterized conserved protein [Function unknown] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g039337m | 1344 | hhsearch probability: 96.29 Identity: 18% subject length: 239 Length of aligned reigon: 77 Coverage over query: 843-920 Coverage over subject: 61-140 |
COG2183, Tex Transcriptional accessory protein [Transcription] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1555, ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG5164, SPT5 Transcription elongation factor [Transcription] COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair] |
| 1g022837m | 291 | hhsearch probability: 90.56 Identity: 19% subject length: 239 Length of aligned reigon: 59 Coverage over query: 124-191 Coverage over subject: 148-207 |
COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only] COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] COG0195, NusA Transcription elongation factor [Transcription] COG1855, ATPase (PilT family) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] |
| 1g019747m | 336 | hhsearch probability: 92.52 Identity: 15% subject length: 239 Length of aligned reigon: 47 Coverage over query: 259-314 Coverage over subject: 148-194 |
COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG0195, NusA Transcription elongation factor [Transcription] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1855, ATPase (PilT family) [General function prediction only] COG5166, Uncharacterized conserved protein [Function unknown] |
| 1g019754m | 336 | hhsearch probability: 92.52 Identity: 15% subject length: 239 Length of aligned reigon: 47 Coverage over query: 259-314 Coverage over subject: 148-194 |
COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG0195, NusA Transcription elongation factor [Transcription] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1855, ATPase (PilT family) [General function prediction only] COG5166, Uncharacterized conserved protein [Function unknown] |
| 1g019742m | 336 | hhsearch probability: 92.52 Identity: 15% subject length: 239 Length of aligned reigon: 47 Coverage over query: 259-314 Coverage over subject: 148-194 |
COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG0195, NusA Transcription elongation factor [Transcription] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1855, ATPase (PilT family) [General function prediction only] COG5166, Uncharacterized conserved protein [Function unknown] |
| 1g014452m | 424 | hhsearch probability: 90.27 Identity: 26% subject length: 239 Length of aligned reigon: 47 Coverage over query: 353-405 Coverage over subject: 148-194 |
COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG0195, NusA Transcription elongation factor [Transcription] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] |
| 1g003933m | 785 | hhsearch probability: 91.24 Identity: 26% subject length: 239 Length of aligned reigon: 38 Coverage over query: 201-238 Coverage over subject: 147-184 |
COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG0195, NusA Transcription elongation factor [Transcription] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] |
| 1g005922m | 669 | hhsearch probability: 90.87 Identity: 36% subject length: 239 Length of aligned reigon: 47 Coverage over query: 223-279 Coverage over subject: 148-194 |
COG0195, NusA Transcription elongation factor [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only] COG1855, ATPase (PilT family) [General function prediction only] COG5166, Uncharacterized conserved protein [Function unknown] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] |
| 1g025119m | 257 | hhsearch probability: 92.32 Identity: 20% subject length: 239 Length of aligned reigon: 66 Coverage over query: 145-223 Coverage over subject: 148-214 |
COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG0195, NusA Transcription elongation factor [Transcription] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g025112m | 257 | hhsearch probability: 92.32 Identity: 20% subject length: 239 Length of aligned reigon: 66 Coverage over query: 145-223 Coverage over subject: 148-214 |
COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG0195, NusA Transcription elongation factor [Transcription] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g025127m | 257 | hhsearch probability: 92.32 Identity: 20% subject length: 239 Length of aligned reigon: 66 Coverage over query: 145-223 Coverage over subject: 148-214 |
COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG0195, NusA Transcription elongation factor [Transcription] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g025165m | 257 | hhsearch probability: 92.69 Identity: 20% subject length: 239 Length of aligned reigon: 66 Coverage over query: 145-223 Coverage over subject: 148-214 |
COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG0195, NusA Transcription elongation factor [Transcription] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g021032m | 318 | hhsearch probability: 92.16 Identity: 24% subject length: 239 Length of aligned reigon: 58 Coverage over query: 247-310 Coverage over subject: 148-206 |
COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG0195, NusA Transcription elongation factor [Transcription] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g032315m | 143 | hhsearch probability: 93.57 Identity: 13% subject length: 239 Length of aligned reigon: 71 Coverage over query: 46-122 Coverage over subject: 59-132 |
COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG0557, VacB Exoribonuclease R [Transcription] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] |
| 1g021005m | 318 | hhsearch probability: 92.16 Identity: 24% subject length: 239 Length of aligned reigon: 58 Coverage over query: 247-310 Coverage over subject: 148-206 |
COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG0195, NusA Transcription elongation factor [Transcription] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g030170m | 182 | hhsearch probability: 97.85 Identity: 15% subject length: 239 Length of aligned reigon: 85 Coverage over query: 80-176 Coverage over subject: 59-145 |
COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG2183, Tex Transcriptional accessory protein [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1530, CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis] |
| 1g030172m | 182 | hhsearch probability: 98.00 Identity: 24% subject length: 239 Length of aligned reigon: 99 Coverage over query: 21-130 Coverage over subject: 31-139 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG0557, VacB Exoribonuclease R [Transcription] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] |
| 1g005716m | 681 | hhsearch probability: 97.34 Identity: 21% subject length: 239 Length of aligned reigon: 70 Coverage over query: 273-345 Coverage over subject: 63-139 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG0557, VacB Exoribonuclease R [Transcription] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1530, CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] |
| 1g030458m | 177 | hhsearch probability: 97.32 Identity: 19% subject length: 239 Length of aligned reigon: 85 Coverage over query: 62-175 Coverage over subject: 60-145 |
COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG0557, VacB Exoribonuclease R [Transcription] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] |
| 1g030455m | 177 | hhsearch probability: 97.32 Identity: 19% subject length: 239 Length of aligned reigon: 85 Coverage over query: 62-175 Coverage over subject: 60-145 |
COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG0557, VacB Exoribonuclease R [Transcription] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] |
| 1g044309m | 259 | hhsearch probability: 98.30 Identity: 21% subject length: 239 Length of aligned reigon: 77 Coverage over query: 83-162 Coverage over subject: 60-140 |
COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1530, CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] |
| 1g019315m | 343 | hhsearch probability: 97.27 Identity: 22% subject length: 239 Length of aligned reigon: 78 Coverage over query: 167-278 Coverage over subject: 59-136 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] |
| 1g029485m | 192 | hhsearch probability: 97.58 Identity: 19% subject length: 239 Length of aligned reigon: 86 Coverage over query: 76-190 Coverage over subject: 59-145 |
COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG0557, VacB Exoribonuclease R [Transcription] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] |
| 1g029495m | 192 | hhsearch probability: 97.58 Identity: 19% subject length: 239 Length of aligned reigon: 86 Coverage over query: 76-190 Coverage over subject: 59-145 |
COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG0557, VacB Exoribonuclease R [Transcription] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] |
| 1g027782m | 219 | hhsearch probability: 90.39 Identity: 18% subject length: 239 Length of aligned reigon: 51 Coverage over query: 147-197 Coverage over subject: 157-209 |
COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG0195, NusA Transcription elongation factor [Transcription] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] |
| 1g012600m | 460 | hhsearch probability: 93.30 Identity: 25% subject length: 239 Length of aligned reigon: 63 Coverage over query: 156-221 Coverage over subject: 148-210 |
COG1514, LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] |
| 1g010205m | 515 | hhsearch probability: 95.04 Identity: 25% subject length: 239 Length of aligned reigon: 63 Coverage over query: 156-221 Coverage over subject: 148-210 |
COG1514, LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] |
| 1g010252m | 514 | hhsearch probability: 95.01 Identity: 25% subject length: 239 Length of aligned reigon: 63 Coverage over query: 156-221 Coverage over subject: 148-210 |
COG1514, LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] |
| 1g010498m | 509 | hhsearch probability: 95.27 Identity: 25% subject length: 239 Length of aligned reigon: 64 Coverage over query: 150-216 Coverage over subject: 147-210 |
COG1514, LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] |
| 1g017090m | 377 | hhsearch probability: 96.50 Identity: 25% subject length: 239 Length of aligned reigon: 64 Coverage over query: 19-85 Coverage over subject: 148-211 |
COG1514, LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g012323m | 466 | hhsearch probability: 95.38 Identity: 25% subject length: 239 Length of aligned reigon: 63 Coverage over query: 108-173 Coverage over subject: 148-210 |
COG1514, LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] |
| 1g012306m | 466 | hhsearch probability: 95.38 Identity: 25% subject length: 239 Length of aligned reigon: 63 Coverage over query: 108-173 Coverage over subject: 148-210 |
COG1514, LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] |
| 1g012372m | 465 | hhsearch probability: 95.10 Identity: 26% subject length: 239 Length of aligned reigon: 62 Coverage over query: 157-221 Coverage over subject: 149-210 |
COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1514, LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis] COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] |
| 1g003989m | 781 | hhsearch probability: 91.97 Identity: 21% subject length: 239 Length of aligned reigon: 38 Coverage over query: 170-213 Coverage over subject: 148-185 |
COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] |
| 1g003997m | 780 | hhsearch probability: 91.77 Identity: 21% subject length: 239 Length of aligned reigon: 38 Coverage over query: 169-212 Coverage over subject: 148-185 |
COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] |
| 1g031032m | 167 | hhsearch probability: 94.58 Identity: 24% subject length: 239 Length of aligned reigon: 41 Coverage over query: 34-98 Coverage over subject: 155-195 |
COG5176, MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] |
| 1g032397m | 141 | hhsearch probability: 99.87 Identity: 22% subject length: 239 Length of aligned reigon: 114 Coverage over query: 3-136 Coverage over subject: 3-118 |
COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] |
| 1g032149m | 146 | hhsearch probability: 99.95 Identity: 28% subject length: 239 Length of aligned reigon: 120 Coverage over query: 6-145 Coverage over subject: 6-127 |
COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] |
| 1g028346m | 210 | hhsearch probability: 99.96 Identity: 25% subject length: 239 Length of aligned reigon: 138 Coverage over query: 6-163 Coverage over subject: 6-145 |
COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1571, Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only] |
| 1g029155m | 198 | hhsearch probability: 99.97 Identity: 24% subject length: 239 Length of aligned reigon: 140 Coverage over query: 4-163 Coverage over subject: 4-145 |
COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG2183, Tex Transcriptional accessory protein [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1571, Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only] COG1645, Uncharacterized Zn-finger containing protein [General function prediction only] |
| 1g020356m | 327 | hhsearch probability: 100.00 Identity: 29% subject length: 239 Length of aligned reigon: 225 Coverage over query: 31-279 Coverage over subject: 6-235 |
COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG2183, Tex Transcriptional accessory protein [Transcription] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] |
| 1g026448m | 238 | hhsearch probability: 100.00 Identity: 31% subject length: 239 Length of aligned reigon: 215 Coverage over query: 7-234 Coverage over subject: 3-228 |
COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] |
| 1g026458m | 238 | hhsearch probability: 100.00 Identity: 31% subject length: 239 Length of aligned reigon: 215 Coverage over query: 7-234 Coverage over subject: 3-228 |
COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] |