T0433

X-ray Targets
387 388 389 390
391 392 393 394
395 396 397 398
399 400 401 402
403 404 405 406
407 408 409 410
411 412 413 414
415 416 417 418
419 420 421 422
423 424 425 426
427 428 429 430
431 432 433 434
435 436 438 439
440 441 442 443
444 445 446 447
448 449 450 451
452 453 454 455
456 457 458 459
461 463 465 470
477 478 479 481
483 485 486 487
488 489 490 491
493 494 495 496
497 501 502 503
504 505 506 507
508 509 510 511
512 513 514

T0433

protein CAC97174 from Listeria innocua

Target type: Server only

Target sequence:

>T0433 CAC97174 , Listeria innocua, 199 residues
MKILLIGASGTLGSAVKERLEKKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDKLEPFFEGFLPVPAAKVARAFEKSVFGAQTGESYQVY

Structure:
Method: X-ray, res=2.06Å, R/Rfree=0.17/0.21
Determined by: MCSG
PDB ID: 3d7l

3d7l_A cartoon
Cartoon diagram of 433: 3d7l chain A

PyMOL of 3d7l

Domains:  PyMOL of domains

Single domain protein.

Structure classification:

NAD(P)-binding Rossmann fold.

CASP category:

Comparative modeling:medium.

Closest templates:

2et6, 2fwm.

Target sequence - PDB file inconsistencies:

T0433    3d7l.pdb    T0433.pdb    PyMOL    PyMOL of domains    

T0433    1 ---MKILLIGASGTLGSAVKERLEKKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDKLEPFFEGFLPVPAAKVARAFEKSVFGAQTGESYQVY 199
           ~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3d7lA   -2 SNAMKILLIGASGTLGSAVKERLEKKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDKLEPFFEGFLPVPAAKVARAFEKSVFGAQTGESYQVY 199

Residue change log: change 1, 49, 114, 115, 127, 143, MSE to MET; remove -2-SNA-0 as it is not present in target sequence;

Single domain protein: target 1-199 ; pdb 1-199

Sequence classification:

Short chain dehydrogenase (adh_short) in Pfam.

Server predictions:

T0433:pdb 1-199:seq 1-199:CM_medium;   alignment

distribution of first scores
First models for T0433: Gaussian kernel density estimation for GDT-TS scores of the first server models, plotted at various bandwidths (=standard deviations). The GDT-TS scores are shown as a spectrum along the horizontal axis: each bar represents first server model. The bars are colored green, gray and black for top 10, bottom 25% and the rest of servers. The family of curves with varying bandwidth is shown. Bandwidth varies from 0.3 to 8.2 GDT-TS % units with a step of 0.1, which corresponds to the color ramp from magenta through blue to cyan. Thicker curves: red, yellow-framed brown and black, correspond to bandwidths 1, 2 and 4 respectively.

click on a score in the table below to display the model in PyMOL

# GROUP ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ ↓ GROUP #
T0433 T0433 T0433 T0433
First score First Z-score Best score Best Z-score
1 BAKER−ROBETTA 79.40 75.04 75.52 1.67 1.81 1.39 79.40 75.04 75.52 1.55 1.61 1.21 BAKER−ROBETTA 1
2 LEE−SERVER 78.27 71.40 79.35 1.51 1.35 1.85 78.39 73.79 79.35 1.38 1.43 1.72 LEE−SERVER 2
3 FEIG 78.02 72.82 78.78 1.47 1.53 1.78 78.02 73.49 78.78 1.32 1.38 1.64 FEIG 3
4 HHpred4 78.02 69.39 77.56 1.47 1.10 1.63 78.02 69.39 77.56 1.32 0.80 1.48 HHpred4 4
5 PS2−server 76.76 71.31 77.92 1.28 1.34 1.68 76.76 71.31 77.92 1.10 1.07 1.53 PS2−server 5
6 Zhang−Server 76.38 71.27 72.63 1.22 1.33 1.05 76.88 71.27 72.71 1.12 1.07 0.84 Zhang−Server 6
7 forecast 75.25 71.73 72.80 1.05 1.39 1.07 76.13 71.73 73.66 0.99 1.13 0.97 forecast 7
8 MULTICOM−CMFR 75.25 67.46 71.25 1.05 0.85 0.88 75.25 67.46 71.25 0.84 0.52 0.65 MULTICOM−CMFR 8
9 PSI 75.13 70.35 73.32 1.03 1.22 1.13 76.38 72.03 77.45 1.04 1.18 1.47 PSI 9
10 MULTICOM−REFINE 75.13 63.44 70.48 1.03 0.34 0.79 75.13 66.25 70.87 0.82 0.35 0.60 MULTICOM−REFINE 10
11 Phyre_de_novo 74.62 67.42 75.29 0.96 0.85 1.36 74.62 67.42 75.29 0.73 0.52 1.18 Phyre_de_novo 11
12 MUProt 74.50 62.65 70.29 0.94 0.24 0.77 75.00 66.08 70.72 0.80 0.32 0.58 MUProt 12
13 MULTICOM−CLUSTER 74.37 70.02 70.97 0.92 1.17 0.85 74.62 70.02 70.97 0.73 0.89 0.61 MULTICOM−CLUSTER 13
14 MULTICOM−RANK 74.25 70.73 65.52 0.90 1.26 0.20 74.62 71.11 65.91 0.73 1.04 -0.05 MULTICOM−RANK 14
15 FAMSD 74.25 69.97 67.99 0.90 1.17 0.49 76.88 73.62 70.10 1.12 1.40 0.50 FAMSD 15
16 circle 74.12 68.17 67.92 0.88 0.94 0.48 77.76 74.75 69.43 1.27 1.57 0.41 circle 16
17 Pcons_local 74.12 65.16 71.95 0.88 0.56 0.96 74.12 65.16 71.95 0.65 0.19 0.74 Pcons_local 17
18 RAPTOR 74.00 67.21 70.18 0.86 0.82 0.75 75.25 68.38 76.82 0.84 0.65 1.38 RAPTOR 18
19 fais−server 73.62 67.42 74.27 0.81 0.85 1.24 73.62 67.42 74.55 0.56 0.52 1.09 fais−server 19
20 keasar−server 73.24 66.29 70.56 0.75 0.70 0.80 74.62 66.96 70.94 0.73 0.45 0.61 keasar−server 20
21 SAM−T08−server 73.24 66.29 73.59 0.75 0.70 1.16 73.37 70.48 73.59 0.52 0.95 0.96 SAM−T08−server 21
22 pro−sp3−TASSER 72.49 68.30 64.03 0.64 0.96 0.02 72.49 68.64 65.31 0.37 0.69 -0.13 pro−sp3−TASSER 22
23 GeneSilicoMetaServer 72.49 62.35 67.75 0.64 0.21 0.46 73.62 64.74 67.75 0.56 0.13 0.19 GeneSilicoMetaServer 23
24 GS−KudlatyPred 72.36 61.31 71.03 0.62 0.07 0.85 72.36 61.31 71.03 0.35 -0.36 0.62 GS−KudlatyPred 24
25 HHpred2 71.98 62.94 72.52 0.56 0.28 1.03 71.98 62.94 72.52 0.28 -0.13 0.82 HHpred2 25
26 Pcons_multi 69.97 65.79 62.51 0.26 0.64 -0.16 69.97 65.79 63.09 -0.06 0.28 -0.42 Pcons_multi 26
27 GS−MetaServer2 69.72 57.79 66.48 0.22 -0.37 0.31 73.62 63.99 66.95 0.56 0.02 0.09 GS−MetaServer2 27
28 3D−JIGSAW_AEP 69.60 64.41 61.19 0.21 0.47 -0.32 72.74 68.89 63.50 0.41 0.73 -0.37 3D−JIGSAW_AEP 28
29 nFOLD3 69.22 60.59 70.46 0.15 -0.02 0.79 71.73 65.62 70.46 0.24 0.26 0.55 nFOLD3 29
30 3D−JIGSAW_V3 68.97 64.20 60.64 0.11 0.44 -0.38 70.73 65.28 62.15 0.07 0.21 -0.55 3D−JIGSAW_V3 30
31 METATASSER 68.84 62.90 63.57 0.09 0.28 -0.03 68.84 62.90 63.57 -0.26 -0.13 -0.36 METATASSER 31
32 Frankenstein 68.59 57.79 66.66 0.05 -0.37 0.33 70.98 63.65 67.76 0.11 -0.02 0.19 Frankenstein 32
33 HHpred5 68.34 62.31 68.51 0.02 0.20 0.55 68.34 62.31 68.51 -0.34 -0.22 0.29 HHpred5 33
34 3DShot2 68.34 61.39 59.86 0.02 0.08 -0.48 68.34 61.39 59.86 -0.34 -0.35 -0.85 3DShot2 34
35 Pushchino 67.84 64.32 61.69 -0.06 0.45 -0.26 67.84 64.32 61.69 -0.43 0.07 -0.61 Pushchino 35
36 COMA−M 67.46 62.69 66.05 -0.12 0.25 0.26 72.86 67.67 70.95 0.43 0.55 0.61 COMA−M 36
37 huber−torda−server 66.58 62.65 62.89 -0.25 0.24 -0.12 73.87 69.35 69.96 0.61 0.79 0.48 huber−torda−server 37
38 mariner1 66.46 60.93 57.92 -0.27 0.03 -0.71 70.98 66.62 63.73 0.11 0.40 -0.34 mariner1 38
39 LOOPP_Server 66.21 59.09 62.02 -0.30 -0.21 -0.22 76.00 69.93 76.28 0.97 0.88 1.31 LOOPP_Server 39
40 pipe_int 65.83 55.61 61.60 -0.36 -0.65 -0.27 65.83 55.61 61.60 -0.77 -1.18 -0.62 pipe_int 40
41 Poing 65.33 56.28 62.50 -0.43 -0.56 -0.16 65.33 58.33 62.50 -0.86 -0.79 -0.50 Poing 41
42 Phyre2 65.33 56.28 62.50 -0.43 -0.56 -0.16 65.33 57.66 62.50 -0.86 -0.88 -0.50 Phyre2 42
43 Phragment 65.33 56.28 62.50 -0.43 -0.56 -0.16 65.33 58.33 62.50 -0.86 -0.79 -0.50 Phragment 43
44 COMA 65.20 56.74 63.25 -0.45 -0.50 -0.07 72.61 65.58 71.88 0.39 0.25 0.73 COMA 44
45 FFASsuboptimal 64.32 58.96 52.11 -0.59 -0.22 -1.40 65.95 60.38 53.67 -0.75 -0.49 -1.66 FFASsuboptimal 45
46 FFASstandard 64.20 58.75 53.12 -0.60 -0.25 -1.28 64.57 60.05 53.12 -0.99 -0.54 -1.73 FFASstandard 46
47 FFASflextemplate 64.20 58.75 53.12 -0.60 -0.25 -1.28 64.57 60.05 53.12 -0.99 -0.54 -1.73 FFASflextemplate 47
48 Fiser−M4T 63.69 57.66 56.61 -0.68 -0.39 -0.86 63.69 57.66 56.61 -1.14 -0.88 -1.27 Fiser−M4T 48
49 SAM−T06−server 63.69 57.24 58.13 -0.68 -0.44 -0.68 64.70 60.18 58.13 -0.97 -0.52 -1.07 SAM−T06−server 49
50 panther_server 63.19 55.23 55.85 -0.76 -0.69 -0.95 65.83 58.38 57.56 -0.77 -0.78 -1.15 panther_server 50
51 FALCON_CONSENSUS 61.31 46.36 57.53 -1.04 -1.81 -0.75 73.49 65.45 71.81 0.54 0.23 0.73 FALCON_CONSENSUS 51
52 FALCON 61.31 46.36 57.53 -1.04 -1.81 -0.75 73.49 65.45 71.81 0.54 0.23 0.73 FALCON 52
53 MUSTER 60.80 53.18 53.78 -1.11 -0.95 -1.20 74.00 70.02 67.76 0.63 0.89 0.19 MUSTER 53
54 FUGUE_KM 60.80 50.08 52.27 -1.11 -1.34 -1.38 62.31 51.63 55.01 -1.38 -1.74 -1.48 FUGUE_KM 54
55 3Dpro 60.30 54.44 54.89 -1.19 -0.79 -1.07 60.30 54.44 54.89 -1.72 -1.34 -1.50 3Dpro 55
56 SAM−T02−server 60.18 49.96 53.38 -1.21 -1.36 -1.25 60.68 54.61 53.38 -1.66 -1.32 -1.70 SAM−T02−server 56
57 BioSerf 59.67 44.51 55.51 -1.28 -2.05 -0.99 59.67 44.51 55.51 -1.83 -2.76 -1.42 BioSerf 57
58 mGenTHREADER 58.42 46.57 51.97 -1.47 -1.79 -1.42 58.42 46.57 51.97 -2.04 -2.47 -1.88 mGenTHREADER 58
59 rehtnap 54.77 47.07 44.10 -2.02 -1.73 -2.35 62.31 53.85 52.73 -1.38 -1.43 -1.78 rehtnap 59
60 Distill 50.63 42.00 41.07 -2.64 -2.37 -2.71 50.63 42.00 41.17 -3.38 -3.12 -3.31 Distill 60
61 MUFOLD−Server 47.36 40.66 43.18 -3.13 -2.53 -2.46 47.61 41.08 43.55 -3.89 -3.26 -2.99 MUFOLD−Server 61
62 FOLDpro 45.98 39.03 37.48 -3.34 -2.74 -3.14 51.63 43.51 47.54 -3.21 -2.91 -2.47 FOLDpro 62
63 Pcons_dot_net 44.22 42.80 26.42 -3.60 -2.26 -4.46 65.70 61.60 58.68 -0.79 -0.32 -1.00 Pcons_dot_net 63
64 MUFOLD−MD 40.08 33.21 51.33 -4.22 -3.48 -1.49 43.59 33.63 51.33 -4.58 -4.32 -1.97 MUFOLD−MD 64
65 ACOMPMOD 39.45 34.67 37.95 -4.31 -3.29 -3.09 62.19 55.57 59.96 -1.40 -1.18 -0.83 ACOMPMOD 65
66 RBO−Proteus 20.10 15.66 31.87 -7.22 -5.69 -3.81 20.23 15.66 31.87 -8.59 -6.89 -4.53 RBO−Proteus 66
67 RANDOM 12.83 10.92 12.83 -8.31 -6.29 -6.08 12.83 10.92 12.83 -9.85 -7.57 -7.03 RANDOM 67
68 schenk−torda−server 11.56 9.63 10.52 -8.50 -6.46 -6.35 11.56 10.13 11.38 -10.07 -7.69 -7.22 schenk−torda−server 68
69 OLGAFS 10.43 8.84 -0.36 -8.67 -6.56 -7.65 19.60 17.67 21.30 -8.69 -6.61 -5.92 OLGAFS 69
70 BHAGEERATH                   -8.31 -6.29 -6.08                   -9.85 -7.57 -7.03 BHAGEERATH 70
71 CpHModels                   -8.31 -6.29 -6.08                   -9.85 -7.57 -7.03 CpHModels 71
72 YASARA                   -8.31 -6.29 -6.08                   -9.85 -7.57 -7.03 YASARA 72
73 mahmood−torda−server                   -8.31 -6.29 -6.08                   -10.14 -7.78 -7.03 mahmood−torda−server 73
74 test_http_server_01                   -8.31 -6.29 -6.08                   -9.85 -7.57 -7.03 test_http_server_01 74