T0504

X-ray Targets
387 388 389 390
391 392 393 394
395 396 397 398
399 400 401 402
403 404 405 406
407 408 409 410
411 412 413 414
415 416 417 418
419 420 421 422
423 424 425 426
427 428 429 430
431 432 433 434
435 436 438 439
440 441 442 443
444 445 446 447
448 449 450 451
452 453 454 455
456 457 458 459
461 463 465 470
477 478 479 481
483 485 486 487
488 489 490 491
493 494 495 496
497 501 502 503
504 505 506 507
508 509 510 511
512 513 514

T0504

Tudor domain of histone-lysine N-methyltransferase SETDB1 from Homo sapiens

Target type: Server only

Target sequence:

>T0504 SETDB1, Homo sapiens, 208 residues
ENLYFQGDLIVSMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLSGNHIAYDYHPPADKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSELYPICRPLKKTWEDIEDISCRDFIEEYVTAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEP

Structure:
Method: X-ray, res=1.77Å, R/Rfree=0.21/0.24
Determined by: SGC
PDB ID: 3dlm

3dlm cartoon
Cartoon diagram of 504: 3dlm

PyMOL of 3dlm

Domains:  PyMOL of domains

Three domains, triplication. Residue ranges in PDB: 1-61; 62-152 and 153-208. Residue ranges in target: 1-61; 62-152 and 153-208. Servers failed to predict mutual domain arrangement. Predictions need to be evaluated by domains separately.

504 domain evaluation plot
Correlation between weighted by the number of residues sum of GDT-TS scores for domain-based evlatuation (y, vertical axis) and whole chain GDT-TS (x, horizontal axis).

To compute the weighted sum, GDT-TS for each domain was multiplied by the domain length, and this sum was divided by the sum of domain lengths. Each point represents first server model. Green, gray and black points are top 10, bottom 25% and the rest of prediction models. Blue line is the best-fit slope line (intersection 0) to the top 10 server models. Red line is the diagonal. Slope and root mean square y-x distance for the top 10 models (average difference between the weighted sum of domain GDT-TS scores and the whole chain GDT-TS score) are shown above the plot.

Structure classification:

SH3 barrel fold.

CASP category:

Whole chain: Free modeling.

1st domain: Comparative modeling:medium. 2nd domain: Fold recognition. 3rd domain: Comparative modeling:easy.

Closest templates:

2g3r, 2qqr, 1ssf, 2r58, 2eqm, 1wjq, 1wgs.

Target sequence - PDB file inconsistencies:

T0504    3dlm.pdb    T0504.pdb    PyMOL    PyMOL of domains    

T0504    1 ENLYFQGDLIVSMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLSGNHIAYDYHPPADKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSELYPICRPLKKTWEDIEDISCRDFIEEYVTAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEP 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3dlmA    1 ENLYFQGDLIVSMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLSGNHIAYDYHPPADKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSELYPICRPLKKTWEDIEDISCRDFIEEYVTAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEP 208

3-domain protein, all domains used in evaluation:

1st domain: target 1-61 ; pdb 1-61

2nd domain: target 62-152 ; pdb 62-152

3rd domain: target 153-208 ; pdb 153-208

Sequence classification:

Tudor domain (PF00567) in Pfam.

Server predictions:

T0504:pdb 1-208:seq 1-208:FM;   alignment

distribution of first scores
First models for T0504: Gaussian kernel density estimation for GDT-TS scores of the first server models, plotted at various bandwidths (=standard deviations). The GDT-TS scores are shown as a spectrum along the horizontal axis: each bar represents first server model. The bars are colored green, gray and black for top 10, bottom 25% and the rest of servers. The family of curves with varying bandwidth is shown. Bandwidth varies from 0.3 to 8.2 GDT-TS % units with a step of 0.1, which corresponds to the color ramp from magenta through blue to cyan. Thicker curves: red, yellow-framed brown and black, correspond to bandwidths 1, 2 and 4 respectively.

504_1:pdb 1-61:seq 1-61:CM_medium;   alignment

distribution of first scores
First models for T0504_1: Gaussian kernel density estimation for GDT-TS scores of the first server models, plotted at various bandwidths (=standard deviations). The GDT-TS scores are shown as a spectrum along the horizontal axis: each bar represents first server model. The bars are colored green, gray and black for top 10, bottom 25% and the rest of servers. The family of curves with varying bandwidth is shown. Bandwidth varies from 0.3 to 8.2 GDT-TS % units with a step of 0.1, which corresponds to the color ramp from magenta through blue to cyan. Thicker curves: red, yellow-framed brown and black, correspond to bandwidths 1, 2 and 4 respectively.

504_2:pdb 62-152:seq 62-152:FR;   alignment

distribution of first scores
First models for T0504_2: Gaussian kernel density estimation for GDT-TS scores of the first server models, plotted at various bandwidths (=standard deviations). The GDT-TS scores are shown as a spectrum along the horizontal axis: each bar represents first server model. The bars are colored green, gray and black for top 10, bottom 25% and the rest of servers. The family of curves with varying bandwidth is shown. Bandwidth varies from 0.3 to 8.2 GDT-TS % units with a step of 0.1, which corresponds to the color ramp from magenta through blue to cyan. Thicker curves: red, yellow-framed brown and black, correspond to bandwidths 1, 2 and 4 respectively.

504_3:pdb 153-208:seq 153-208:CM_easy;   alignment

distribution of first scores
First models for T0504_3: Gaussian kernel density estimation for GDT-TS scores of the first server models, plotted at various bandwidths (=standard deviations). The GDT-TS scores are shown as a spectrum along the horizontal axis: each bar represents first server model. The bars are colored green, gray and black for top 10, bottom 25% and the rest of servers. The family of curves with varying bandwidth is shown. Bandwidth varies from 0.3 to 8.2 GDT-TS % units with a step of 0.1, which corresponds to the color ramp from magenta through blue to cyan. Thicker curves: red, yellow-framed brown and black, correspond to bandwidths 1, 2 and 4 respectively.

click on a score in the table below to display the model in PyMOL

# GROUP ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ ↓ GROUP #
T0504 504_1 504_2 504_3 T0504 504_1 504_2 504_3 T0504 504_1 504_2 504_3 T0504 504_1 504_2 504_3
First score First Z-score Best score Best Z-score
1 SAM−T08−server 29.93 24.36 57.13 74.18 70.63 74.65 44.78 38.37 56.18 77.23 70.69 77.63 1.99 1.20 1.60 1.83 2.01 1.77 1.07 0.86 1.47 0.69 0.66 0.72 29.93 24.36 60.32 75.00 70.63 76.23 44.78 38.37 59.08 77.68 70.69 81.97 1.68 0.81 1.63 1.28 1.39 1.41 0.26 0.07 1.27 0.53 0.47 0.79 SAM−T08−server 1
2 3D−JIGSAW_V3 27.52 26.36 56.63 75.41 71.31 77.01 46.98 42.58 51.89 83.93 83.33 81.59 1.49 1.61 1.57 1.91 2.05 1.93 1.33 1.40 1.05 0.94 1.13 0.87 27.52 26.72 56.63 75.82 73.22 77.03 47.53 42.58 53.15 85.27 83.78 81.59 1.12 1.34 1.35 1.33 1.55 1.47 0.58 0.56 0.63 0.90 1.09 0.77 3D−JIGSAW_V3 2
3 HHpred4 27.40 25.48 54.92 73.36 67.90 72.30 48.08 45.70 50.29 84.82 77.68 81.87 1.46 1.43 1.44 1.78 1.82 1.61 1.47 1.80 0.89 0.97 0.92 0.88 27.40 25.48 54.92 73.36 67.90 72.30 48.08 45.70 50.29 84.82 77.68 81.87 1.09 1.06 1.23 1.18 1.22 1.15 0.64 0.93 0.32 0.87 0.80 0.78 HHpred4 3
4 GeneSilicoMetaServer 27.04 23.64 29.12 76.64 69.81 75.09 45.60 41.76 43.02 0.00 0.00 0.80 1.39 1.05 -0.45 1.99 1.95 1.80 1.17 1.30 0.18 -2.13 -1.97 -2.15 27.04 23.68 29.12 76.64 69.81 75.09 51.10 46.52 52.12 58.48 45.69 46.14 1.01 0.65 -0.68 1.38 1.34 1.34 0.99 1.03 0.51 -0.39 -0.71 -1.01 GeneSilicoMetaServer 4
5 Frankenstein 26.80 25.48 39.87 77.05 68.58 75.85 47.53 43.68 51.19 20.98 17.71 24.50 1.34 1.43 0.34 2.02 1.87 1.85 1.40 1.54 0.98 -1.36 -1.31 -1.27 26.80 25.48 39.87 77.05 68.58 75.85 51.92 48.35 52.24 73.21 68.45 70.70 0.95 1.06 0.12 1.40 1.27 1.39 1.08 1.24 0.53 0.32 0.36 0.22 Frankenstein 5
6 MUProt 26.68 26.36 52.53 63.12 57.38 64.58 43.96 39.56 50.36 83.48 77.53 82.82 1.32 1.61 1.27 1.11 1.12 1.09 0.97 1.01 0.90 0.92 0.91 0.92 26.68 26.36 52.53 63.12 58.33 64.58 50.55 46.34 53.93 83.48 80.06 83.04 0.92 1.26 1.05 0.57 0.64 0.62 0.92 1.01 0.71 0.81 0.91 0.84 MUProt 6
7 PSI 26.56 25.68 48.69 51.64 47.81 51.99 40.66 35.71 50.27 88.39 84.23 83.24 1.29 1.47 0.99 0.37 0.48 0.23 0.57 0.52 0.89 1.10 1.16 0.94 26.56 25.68 48.83 55.33 47.81 53.06 42.86 38.65 50.55 88.39 85.71 86.59 0.89 1.11 0.78 0.10 -0.01 -0.17 0.04 0.10 0.34 1.05 1.18 1.02 PSI 7
8 HHpred2 26.32 23.52 52.78 51.23 47.13 60.20 46.70 41.39 53.36 86.16 81.10 84.14 1.24 1.02 1.29 0.34 0.44 0.79 1.30 1.25 1.19 1.02 1.05 0.97 26.32 23.52 52.78 51.23 47.13 60.20 46.70 41.39 53.36 86.16 81.10 84.14 0.84 0.62 1.07 -0.15 -0.05 0.32 0.48 0.42 0.65 0.94 0.96 0.90 HHpred2 8
9 LEE−SERVER 25.96 24.44 57.28 76.64 71.72 72.47 50.82 45.88 54.33 84.38 76.94 83.96 1.17 1.21 1.62 1.99 2.08 1.62 1.80 1.82 1.29 0.95 0.89 0.96 30.77 27.08 60.63 76.64 71.72 73.63 50.82 45.88 59.33 90.18 86.61 87.63 1.87 1.43 1.65 1.38 1.46 1.24 0.95 0.95 1.30 1.13 1.22 1.07 LEE−SERVER 9
10 MULTICOM−CMFR 25.84 25.60 47.60 47.95 41.94 49.10 43.96 38.09 50.09 85.27 84.67 83.19 1.14 1.45 0.91 0.13 0.09 0.04 0.97 0.83 0.87 0.99 1.18 0.93 25.84 25.60 47.60 64.34 58.06 64.37 49.73 45.15 53.74 85.27 84.67 83.19 0.73 1.09 0.69 0.64 0.62 0.60 0.83 0.87 0.69 0.90 1.13 0.85 MULTICOM−CMFR 10
11 FALCON 25.72 23.44 59.41 72.54 66.53 68.66 50.55 47.62 64.00 79.91 78.42 80.15 1.12 1.01 1.77 1.72 1.73 1.37 1.77 2.05 2.23 0.79 0.95 0.82 25.72 24.24 59.41 72.95 67.62 68.66 50.82 48.08 64.45 79.91 78.42 80.16 0.70 0.78 1.56 1.15 1.21 0.90 0.95 1.21 1.86 0.64 0.83 0.70 FALCON 11
12 FALCON_CONSENSUS 25.48 24.24 59.03 72.95 66.67 68.10 50.55 47.80 63.58 79.91 78.42 80.16 1.07 1.17 1.74 1.75 1.74 1.33 1.77 2.07 2.19 0.79 0.95 0.82 25.72 24.24 59.41 72.95 67.62 68.66 50.82 48.08 64.45 79.91 78.42 80.16 0.70 0.78 1.56 1.15 1.21 0.90 0.95 1.21 1.86 0.64 0.83 0.70 FALCON_CONSENSUS 12
13 MULTICOM−REFINE 25.24 24.60 52.63 63.52 55.05 64.60 43.41 38.65 50.52 84.38 78.42 82.89 1.02 1.25 1.27 1.14 0.97 1.09 0.90 0.90 0.92 0.95 0.95 0.92 25.60 24.60 52.63 63.52 56.56 64.60 52.47 46.34 53.93 84.38 80.06 82.91 0.67 0.86 1.06 0.59 0.53 0.62 1.14 1.01 0.71 0.85 0.91 0.84 MULTICOM−REFINE 13
14 MULTICOM−RANK 25.12 24.48 52.27 63.12 55.74 63.62 43.68 39.29 50.21 83.04 82.14 82.60 0.99 1.22 1.25 1.11 1.01 1.02 0.93 0.98 0.89 0.90 1.09 0.91 25.48 24.76 52.27 63.93 59.02 64.65 50.00 45.79 53.92 83.93 82.14 82.60 0.64 0.90 1.03 0.61 0.68 0.62 0.86 0.94 0.71 0.83 1.01 0.82 MULTICOM−RANK 14
15 MULTICOM−CLUSTER 25.00 24.52 52.33 62.70 55.33 63.67 43.68 38.92 50.33 82.59 81.10 82.59 0.97 1.23 1.25 1.09 0.99 1.03 0.93 0.93 0.90 0.89 1.05 0.91 25.48 24.76 52.33 63.12 56.56 64.55 46.43 39.65 50.91 87.50 81.55 86.76 0.64 0.90 1.04 0.57 0.53 0.62 0.45 0.22 0.38 1.00 0.98 1.03 MULTICOM−CLUSTER 15
16 FEIG 24.76 23.80 36.96 29.92 23.63 36.38 23.90 21.06 34.62 86.61 83.04 82.92 0.92 1.08 0.13 -1.03 -1.13 -0.82 -1.47 -1.36 -0.64 1.04 1.12 0.92 24.76 23.80 36.96 33.20 26.64 37.34 23.90 21.06 34.62 86.61 83.04 82.92 0.48 0.68 -0.10 -1.23 -1.31 -1.24 -2.13 -1.98 -1.40 0.96 1.05 0.84 FEIG 16
17 circle 24.64 19.31 28.07 17.62 15.98 7.00 38.19 33.42 36.19 84.38 71.88 82.89 0.90 0.16 -0.53 -1.83 -1.64 -2.82 0.26 0.23 -0.49 0.95 0.70 0.92 24.64 20.99 28.07 45.08 43.44 52.85 38.19 33.42 36.19 84.38 71.88 82.89 0.45 0.04 -0.76 -0.52 -0.28 -0.18 -0.49 -0.52 -1.22 0.85 0.52 0.83 circle 17
18 METATASSER 24.16 22.88 44.01 43.85 38.39 41.12 40.93 35.62 51.15 80.80 78.42 77.64 0.80 0.89 0.64 -0.13 -0.14 -0.50 0.60 0.51 0.98 0.82 0.95 0.73 25.00 23.64 45.53 43.85 38.39 44.60 46.15 41.76 51.99 82.59 78.42 77.67 0.53 0.65 0.53 -0.59 -0.59 -0.74 0.42 0.47 0.50 0.77 0.83 0.57 METATASSER 18
19 keasar−server 24.04 23.08 38.38 20.08 18.17 23.11 45.33 40.38 49.02 83.04 79.46 81.70 0.77 0.93 0.23 -1.67 -1.49 -1.72 1.13 1.12 0.77 0.90 0.99 0.88 24.04 23.08 39.01 20.49 18.17 27.40 45.33 40.38 49.02 83.93 79.46 81.70 0.31 0.52 0.05 -1.99 -1.82 -1.91 0.33 0.30 0.18 0.83 0.88 0.78 keasar−server 19
20 RAPTOR 23.92 21.47 50.74 52.46 37.16 45.64 42.58 36.08 57.99 82.59 72.77 84.03 0.75 0.60 1.14 0.42 -0.23 -0.20 0.80 0.57 1.65 0.89 0.74 0.96 23.92 21.55 50.74 56.97 43.31 52.10 42.86 36.26 57.99 83.48 73.96 84.03 0.28 0.17 0.92 0.20 -0.28 -0.23 0.04 -0.18 1.16 0.81 0.62 0.89 RAPTOR 20
21 HHpred5 23.92 19.75 45.35 36.07 28.69 54.61 33.24 27.20 41.58 83.48 67.41 82.19 0.75 0.25 0.74 -0.64 -0.79 0.41 -0.34 -0.57 0.04 0.92 0.54 0.90 23.92 19.75 45.35 36.07 28.69 54.61 33.24 27.20 41.58 83.48 67.41 82.19 0.28 -0.24 0.52 -1.06 -1.18 -0.06 -1.06 -1.25 -0.64 0.81 0.31 0.80 HHpred5 21
22 3D−JIGSAW_AEP 23.56 21.80 43.71 48.77 44.40 46.84 39.56 35.53 44.87 82.59 79.31 79.82 0.67 0.67 0.62 0.19 0.26 -0.11 0.43 0.50 0.36 0.89 0.98 0.81 24.64 23.76 45.78 52.87 46.59 52.49 45.60 41.67 48.45 82.59 79.31 79.99 0.45 0.67 0.55 -0.05 -0.08 -0.20 0.36 0.46 0.11 0.77 0.88 0.69 3D−JIGSAW_AEP 22
23 COMA 23.08 22.20 45.94 45.49 43.31 50.61 32.69 28.48 43.01 85.71 82.44 85.92 0.57 0.75 0.78 -0.03 0.18 0.14 -0.40 -0.41 0.18 1.00 1.10 1.04 27.76 27.20 59.75 75.41 64.07 74.67 50.00 43.96 58.22 85.71 84.82 87.66 1.17 1.45 1.59 1.30 0.99 1.31 0.86 0.73 1.18 0.92 1.14 1.07 COMA 23
24 COMA−M 23.08 22.20 45.82 45.90 43.72 51.49 31.32 27.29 41.95 85.71 82.44 85.92 0.57 0.75 0.78 -0.00 0.21 0.20 -0.57 -0.56 0.08 1.00 1.10 1.04 27.89 27.40 59.75 75.82 72.54 74.67 51.92 48.44 58.22 86.16 84.97 87.66 1.20 1.50 1.59 1.33 1.51 1.31 1.08 1.26 1.18 0.94 1.14 1.07 COMA−M 24
25 Pcons_local 22.84 21.07 28.12 14.34 11.88 4.15 42.58 38.74 39.62 80.80 74.26 81.00 0.53 0.52 -0.52 -2.04 -1.91 -3.01 0.80 0.91 -0.15 0.82 0.79 0.85 22.84 21.07 28.12 62.70 58.33 64.06 42.58 38.74 39.62 80.80 74.26 81.00 0.03 0.06 -0.75 0.54 0.64 0.58 0.01 0.11 -0.85 0.68 0.64 0.74 Pcons_local 25
26 Pcons_dot_net 22.84 21.07 28.12 14.34 11.88 4.15 42.58 38.74 39.62 80.80 74.26 81.00 0.53 0.52 -0.52 -2.04 -1.91 -3.01 0.80 0.91 -0.15 0.82 0.79 0.85 22.84 21.07 28.12 14.34 11.88 4.15 44.78 40.11 48.17 80.80 74.26 81.00 0.03 0.06 -0.75 -2.36 -2.21 -3.50 0.26 0.27 0.08 0.68 0.64 0.74 Pcons_dot_net 26
27 Pcons_multi 22.84 21.07 28.12 14.34 11.88 4.15 42.58 38.74 39.62 80.80 74.26 81.00 0.53 0.52 -0.52 -2.04 -1.91 -3.01 0.80 0.91 -0.15 0.82 0.79 0.85 24.40 22.72 37.64 18.44 17.62 22.39 47.53 43.68 47.61 84.82 78.57 83.83 0.39 0.44 -0.05 -2.12 -1.86 -2.25 0.58 0.69 0.02 0.87 0.84 0.88 Pcons_multi 27
28 3DShot2 22.48 19.99 33.92 23.77 18.44 30.27 40.93 31.87 36.74 79.91 72.17 76.05 0.45 0.30 -0.10 -1.43 -1.47 -1.24 0.60 0.03 -0.43 0.79 0.71 0.67 22.48 19.99 33.92 23.77 18.44 30.27 40.93 31.87 36.74 79.91 72.17 76.05 -0.06 -0.18 -0.32 -1.80 -1.81 -1.72 -0.18 -0.70 -1.16 0.64 0.54 0.49 3DShot2 28
29 Zhang−Server 21.75 20.47 46.12 45.49 43.31 54.43 32.14 27.20 44.62 78.57 73.81 79.67 0.30 0.40 0.80 -0.03 0.18 0.40 -0.47 -0.57 0.34 0.74 0.78 0.80 24.88 22.07 55.35 66.39 57.65 64.41 42.86 37.55 57.04 79.91 77.23 82.12 0.50 0.29 1.26 0.76 0.60 0.61 0.04 -0.03 1.05 0.64 0.78 0.80 Zhang−Server 29
30 Phyre_de_novo 21.15 20.19 44.47 43.85 39.21 52.33 30.77 26.56 40.95 78.57 75.00 81.75 0.18 0.34 0.68 -0.13 -0.09 0.26 -0.64 -0.65 -0.02 0.74 0.82 0.88 25.24 24.12 49.44 72.95 65.57 72.03 50.00 42.49 61.71 78.57 75.00 81.75 0.59 0.75 0.82 1.15 1.08 1.13 0.86 0.55 1.56 0.57 0.67 0.78 Phyre_de_novo 30
31 Phyre2 20.43 19.71 45.39 43.85 38.66 53.00 30.50 26.46 44.04 75.89 73.21 79.87 0.03 0.24 0.74 -0.13 -0.13 0.30 -0.67 -0.66 0.28 0.64 0.75 0.81 25.60 23.76 45.47 74.18 68.17 74.42 49.18 44.96 55.59 77.68 75.00 79.87 0.67 0.67 0.53 1.23 1.24 1.29 0.77 0.84 0.89 0.53 0.67 0.68 Phyre2 31
32 GS−KudlatyPred 20.31 17.91 43.44 56.56 49.59 64.32 43.96 39.01 54.24 51.34 38.54 44.07 0.00 -0.13 0.60 0.69 0.60 1.07 0.97 0.94 1.28 -0.25 -0.54 -0.53 20.31 17.91 43.57 57.38 49.59 64.32 43.96 39.01 54.24 51.34 38.54 45.27 -0.56 -0.65 0.39 0.22 0.10 0.60 0.17 0.14 0.75 -0.74 -1.05 -1.05 GS−KudlatyPred 32
33 SAM−T06−server 20.19 17.23 31.99 22.95 16.12 22.20 42.58 34.16 50.18 50.89 43.16 56.99 -0.02 -0.27 -0.24 -1.49 -1.63 -1.79 0.80 0.32 0.88 -0.27 -0.37 -0.05 24.88 23.16 31.99 73.36 68.85 70.50 42.58 39.47 50.18 50.89 43.16 56.99 0.50 0.54 -0.47 1.18 1.28 1.02 0.01 0.20 0.30 -0.76 -0.83 -0.46 SAM−T06−server 33
34 CpHModels 20.07 17.55 23.41 56.97 51.78 57.55 42.86 37.73 42.69 0.00 0.00 0.80 -0.04 -0.21 -0.87 0.72 0.75 0.61 0.83 0.78 0.15 -2.13 -1.97 -2.15 20.07 17.55 23.41 56.97 51.78 57.55 42.86 37.73 42.69 0.00 0.00 0.80 -0.62 -0.74 -1.10 0.20 0.24 0.14 0.04 -0.01 -0.51 -3.21 -2.87 -3.28 CpHModels 34
35 pro−sp3−TASSER 19.71 16.51 35.58 35.25 29.23 34.31 36.54 31.23 46.96 62.05 53.42 61.12 -0.12 -0.42 0.02 -0.69 -0.75 -0.97 0.06 -0.05 0.57 0.14 0.02 0.11 21.88 19.95 35.58 35.25 29.23 34.31 38.19 31.23 46.96 69.64 64.29 71.99 -0.20 -0.19 -0.20 -1.11 -1.15 -1.44 -0.49 -0.78 -0.05 0.14 0.17 0.29 pro−sp3−TASSER 35
36 BAKER−ROBETTA 19.59 16.27 39.59 61.07 49.59 64.38 45.60 38.65 49.83 31.25 30.36 38.37 -0.14 -0.47 0.32 0.98 0.60 1.08 1.17 0.90 0.85 -0.99 -0.84 -0.75 20.07 17.75 42.81 61.07 51.64 64.38 45.60 39.19 53.24 50.45 38.24 43.74 -0.62 -0.69 0.33 0.44 0.23 0.61 0.36 0.16 0.64 -0.78 -1.06 -1.13 BAKER−ROBETTA 36
37 3Dpro 19.35 17.99 32.90 19.26 17.90 22.31 42.58 37.45 44.58 69.20 64.14 69.21 -0.19 -0.12 -0.17 -1.72 -1.51 -1.78 0.80 0.74 0.33 0.40 0.42 0.41 23.32 21.15 39.32 19.26 17.90 22.70 51.92 47.53 53.35 79.91 71.58 78.86 0.14 0.08 0.07 -2.07 -1.84 -2.23 1.08 1.15 0.65 0.64 0.51 0.63 3Dpro 37
38 BioSerf 18.51 15.79 35.72 43.44 34.70 44.46 31.87 25.46 35.83 64.29 54.17 68.36 -0.37 -0.57 0.03 -0.16 -0.39 -0.28 -0.50 -0.79 -0.52 0.22 0.04 0.38 18.51 15.79 35.72 43.44 34.70 44.46 31.87 25.46 35.83 64.29 54.17 68.36 -0.98 -1.14 -0.19 -0.62 -0.81 -0.75 -1.21 -1.46 -1.26 -0.11 -0.31 0.11 BioSerf 38
39 Pushchino 18.39 15.66 15.85 22.95 17.49 27.24 14.56 12.64 15.12 68.30 58.19 49.93 -0.39 -0.60 -1.42 -1.49 -1.54 -1.44 -2.61 -2.44 -2.55 0.37 0.19 -0.31 18.39 15.66 15.85 22.95 17.49 27.24 14.56 12.64 15.12 68.30 58.19 49.93 -1.01 -1.16 -1.66 -1.85 -1.87 -1.92 -3.19 -2.97 -3.52 0.08 -0.12 -0.82 Pushchino 39
40 FOLDpro 18.15 16.95 26.06 16.80 15.16 22.25 26.92 26.19 28.47 66.52 62.05 69.84 -0.44 -0.33 -0.67 -1.88 -1.69 -1.78 -1.11 -0.70 -1.24 0.30 0.34 0.43 22.11 19.55 26.06 19.26 16.39 22.40 50.55 45.24 51.00 66.52 62.05 69.84 -0.14 -0.28 -0.91 -2.07 -1.93 -2.25 0.92 0.88 0.39 -0.01 0.06 0.18 FOLDpro 40
41 mGenTHREADER 16.95 15.66 22.26 48.77 41.80 41.71 24.73 21.80 16.32 53.57 45.24 52.66 -0.69 -0.60 -0.95 0.19 0.08 -0.46 -1.37 -1.26 -2.43 -0.17 -0.29 -0.21 16.95 15.66 22.26 48.77 41.80 41.71 24.73 21.80 16.32 53.57 45.24 52.66 -1.34 -1.16 -1.19 -0.30 -0.38 -0.94 -2.03 -1.89 -3.39 -0.63 -0.73 -0.68 mGenTHREADER 41
42 MUSTER 16.11 14.34 35.52 45.49 42.21 53.71 30.22 26.37 41.16 41.07 38.69 48.54 -0.86 -0.87 0.02 -0.03 0.11 0.35 -0.70 -0.68 0.00 -0.63 -0.53 -0.37 27.52 25.92 42.44 79.51 71.86 78.85 53.02 45.51 55.71 41.07 38.69 48.54 1.12 1.16 0.31 1.55 1.47 1.59 1.21 0.91 0.91 -1.23 -1.04 -0.89 MUSTER 42
43 FAMSD 15.74 13.42 42.71 61.07 49.86 53.71 27.47 21.25 35.93 84.38 73.66 83.11 -0.94 -1.06 0.55 0.98 0.62 0.35 -1.04 -1.33 -0.51 0.95 0.77 0.93 25.00 21.47 43.32 61.07 49.86 53.71 50.82 47.89 52.89 84.38 73.66 83.11 0.53 0.15 0.37 0.44 0.12 -0.12 0.95 1.19 0.60 0.85 0.61 0.85 FAMSD 43
44 PS2−server 15.38 13.62 28.27 44.67 40.57 52.98 25.55 20.24 28.23 39.29 32.44 42.98 -1.01 -1.02 -0.51 -0.08 0.00 0.30 -1.27 -1.46 -1.26 -0.69 -0.77 -0.57 26.44 24.52 54.07 74.59 67.76 76.13 37.09 30.77 45.58 81.70 79.31 82.37 0.87 0.84 1.17 1.25 1.21 1.41 -0.62 -0.83 -0.20 0.72 0.88 0.81 PS2−server 44
45 GS−MetaServer2 14.78 13.62 15.99 46.72 42.35 51.53 30.50 29.03 29.88 0.00 0.00 0.80 -1.13 -1.02 -1.41 0.05 0.12 0.20 -0.67 -0.34 -1.10 -2.13 -1.97 -2.15 27.04 23.68 29.12 76.64 69.81 75.09 51.10 46.52 47.17 58.48 45.69 46.14 1.01 0.65 -0.68 1.38 1.34 1.34 0.99 1.03 -0.03 -0.39 -0.71 -1.01 GS−MetaServer2 45
46 pipe_int 14.66 12.18 13.89 39.75 38.12 41.07 32.69 26.65 32.73 0.00 0.00 0.80 -1.16 -1.31 -1.57 -0.40 -0.16 -0.51 -0.40 -0.64 -0.82 -2.13 -1.97 -2.15 14.66 12.18 13.89 39.75 38.12 41.07 32.69 26.65 32.73 0.00 0.00 0.80 -1.88 -1.95 -1.81 -0.84 -0.60 -0.98 -1.12 -1.32 -1.60 -3.21 -2.87 -3.28 pipe_int 46
47 RBO−Proteus 14.54 12.22 32.55 43.03 34.56 44.59 27.47 23.26 44.47 37.95 28.72 42.52 -1.18 -1.31 -0.20 -0.19 -0.40 -0.27 -1.04 -1.08 0.32 -0.74 -0.90 -0.59 15.26 14.54 32.55 43.03 34.56 44.59 32.69 27.11 46.24 47.77 44.49 53.95 -1.74 -1.42 -0.43 -0.64 -0.82 -0.74 -1.12 -1.26 -0.13 -0.91 -0.77 -0.62 RBO−Proteus 47
48 forecast 14.54 11.18 16.63 33.61 28.28 35.24 23.63 20.60 21.86 23.21 20.68 32.32 -1.18 -1.52 -1.37 -0.80 -0.82 -0.90 -1.51 -1.42 -1.89 -1.28 -1.20 -0.97 14.54 11.62 17.51 33.61 28.28 36.62 23.63 21.34 23.55 25.45 20.68 32.32 -1.90 -2.08 -1.54 -1.21 -1.21 -1.29 -2.16 -1.94 -2.60 -1.99 -1.89 -1.70 forecast 48
49 ACOMPMOD 14.30 13.42 11.79 47.54 44.54 50.82 28.30 25.73 20.63 0.00 0.00 0.80 -1.23 -1.06 -1.72 0.11 0.27 0.16 -0.94 -0.76 -2.01 -2.13 -1.97 -2.15 22.11 19.71 12.17 47.54 44.54 50.82 50.55 45.97 58.83 79.02 69.79 76.71 -0.14 -0.25 -1.93 -0.37 -0.21 -0.32 0.92 0.96 1.25 0.60 0.43 0.52 ACOMPMOD 49
50 FFASstandard 14.18 12.66 17.16 43.03 40.57 53.42 30.50 28.48 31.18 0.00 0.00 0.80 -1.26 -1.22 -1.33 -0.19 0.00 0.33 -0.67 -0.41 -0.98 -2.13 -1.97 -2.15 14.18 13.18 17.16 43.85 40.57 53.42 31.32 28.75 31.51 0.00 0.00 0.80 -1.99 -1.73 -1.56 -0.59 -0.45 -0.14 -1.28 -1.07 -1.74 -3.21 -2.87 -3.28 FFASstandard 50
51 nFOLD3 14.06 13.50 15.08 45.08 43.17 51.50 29.40 23.54 27.86 0.00 0.00 0.80 -1.28 -1.04 -1.48 -0.05 0.18 0.20 -0.80 -1.04 -1.30 -2.13 -1.97 -2.15 25.00 23.00 41.31 69.67 67.76 63.76 49.45 43.96 51.63 83.04 73.51 81.88 0.53 0.50 0.22 0.96 1.21 0.56 0.80 0.73 0.46 0.79 0.60 0.78 nFOLD3 51
52 FFASflextemplate 14.06 13.02 15.87 42.21 38.39 52.92 30.77 28.94 28.68 0.00 0.00 0.80 -1.28 -1.14 -1.42 -0.24 -0.14 0.30 -0.64 -0.35 -1.22 -2.13 -1.97 -2.15 14.06 13.02 16.06 43.85 39.34 52.92 30.77 28.94 29.44 0.00 0.00 0.80 -2.02 -1.76 -1.65 -0.59 -0.53 -0.18 -1.34 -1.05 -1.96 -3.21 -2.87 -3.28 FFASflextemplate 52
53 Phragment 14.06 12.98 33.89 43.85 39.48 51.89 28.85 24.82 46.39 36.61 29.46 35.91 -1.28 -1.15 -0.10 -0.13 -0.07 0.23 -0.87 -0.88 0.51 -0.79 -0.88 -0.84 15.14 13.86 37.00 44.26 39.62 53.09 29.67 26.46 47.72 44.20 34.97 44.87 -1.76 -1.57 -0.10 -0.57 -0.51 -0.16 -1.46 -1.34 0.03 -1.08 -1.22 -1.07 Phragment 53
54 Poing 14.06 12.46 33.49 43.85 38.12 52.89 30.22 26.19 44.57 30.80 26.04 37.43 -1.28 -1.26 -0.13 -0.13 -0.16 0.30 -0.70 -0.70 0.33 -1.00 -1.00 -0.78 14.90 13.82 35.61 45.49 40.30 53.34 30.22 26.19 45.81 40.62 33.19 43.26 -1.82 -1.58 -0.20 -0.49 -0.47 -0.15 -1.40 -1.37 -0.17 -1.26 -1.30 -1.15 Poing 54
55 FUGUE_KM 13.58 12.90 8.07 45.08 42.62 49.39 26.37 25.27 13.53 0.00 0.00 0.80 -1.38 -1.17 -1.99 -0.05 0.14 0.06 -1.17 -0.82 -2.70 -2.13 -1.97 -2.15 22.84 21.23 21.56 56.97 47.40 57.55 51.92 48.26 44.58 0.00 0.00 0.80 0.03 0.10 -1.24 0.20 -0.03 0.14 1.08 1.23 -0.31 -3.21 -2.87 -3.28 FUGUE_KM 55
56 FFASsuboptimal 13.58 12.10 20.79 44.26 38.80 40.35 28.57 25.09 33.68 21.43 19.49 23.90 -1.38 -1.33 -1.06 -0.11 -0.12 -0.56 -0.91 -0.84 -0.73 -1.35 -1.25 -1.29 14.54 13.82 25.44 45.90 43.44 53.72 30.50 28.30 33.71 21.43 19.49 25.59 -1.90 -1.58 -0.95 -0.47 -0.28 -0.12 -1.37 -1.12 -1.49 -2.18 -1.95 -2.04 FFASsuboptimal 56
57 LOOPP_Server 13.46 12.02 12.50 31.97 29.51 25.79 23.08 15.66 26.19 24.55 19.49 22.05 -1.41 -1.35 -1.67 -0.90 -0.74 -1.54 -1.57 -2.05 -1.46 -1.23 -1.25 -1.36 16.95 14.62 17.75 42.21 41.12 37.50 25.00 20.79 32.16 34.82 32.14 33.93 -1.34 -1.40 -1.52 -0.69 -0.42 -1.23 -2.00 -2.01 -1.66 -1.54 -1.35 -1.62 LOOPP_Server 57
58 SAM−T02−server 13.10 12.38 9.25 43.44 40.98 49.16 26.92 24.18 16.69 0.00 0.00 0.80 -1.48 -1.27 -1.91 -0.16 0.03 0.04 -1.11 -0.96 -2.39 -2.13 -1.97 -2.15 19.83 16.91 9.25 43.44 40.98 49.16 45.33 38.92 31.54 44.20 36.16 35.71 -0.67 -0.88 -2.15 -0.62 -0.43 -0.43 0.33 0.13 -1.73 -1.08 -1.16 -1.53 SAM−T02−server 58
59 fais−server 12.98 12.26 23.15 30.74 26.09 31.74 24.73 20.51 39.42 31.70 27.53 32.50 -1.50 -1.30 -0.89 -0.98 -0.96 -1.14 -1.37 -1.43 -0.17 -0.97 -0.95 -0.97 16.95 13.02 23.15 31.15 26.50 34.11 25.27 22.98 39.42 31.70 27.53 44.92 -1.34 -1.76 -1.12 -1.35 -1.31 -1.46 -1.97 -1.75 -0.87 -1.69 -1.57 -1.07 fais−server 59
60 MUFOLD−MD 12.38 11.02 21.43 24.59 18.85 30.08 27.20 25.73 34.25 33.48 28.12 35.20 -1.63 -1.55 -1.01 -1.38 -1.45 -1.25 -1.07 -0.76 -0.68 -0.91 -0.93 -0.87 13.70 11.78 26.24 31.15 28.69 35.22 29.40 25.73 38.72 38.39 32.14 40.24 -2.10 -2.04 -0.89 -1.35 -1.18 -1.38 -1.50 -1.43 -0.95 -1.36 -1.35 -1.30 MUFOLD−MD 60
61 Distill 11.54 10.46 19.34 24.59 17.76 29.85 24.73 21.52 27.55 34.82 28.87 38.64 -1.80 -1.67 -1.17 -1.38 -1.52 -1.27 -1.37 -1.30 -1.33 -0.86 -0.90 -0.74 12.62 10.74 21.75 27.46 24.04 33.04 24.73 21.61 29.57 36.16 28.87 42.07 -2.35 -2.28 -1.22 -1.57 -1.46 -1.53 -2.03 -1.91 -1.95 -1.47 -1.51 -1.21 Distill 61
62 huber−torda−server 10.46 8.05 7.09 23.36 18.44 20.73 20.60 17.49 20.04 24.11 21.73 18.40 -2.02 -2.17 -2.07 -1.46 -1.47 -1.89 -1.88 -1.82 -2.06 -1.25 -1.16 -1.49 10.46 9.38 7.09 25.00 20.63 22.14 20.60 17.49 20.04 25.00 21.73 20.75 -2.85 -2.59 -2.31 -1.72 -1.67 -2.27 -2.50 -2.40 -2.99 -2.01 -1.84 -2.28 huber−torda−server 62
63 rehtnap 10.34 9.34 3.90 35.66 31.97 41.78 14.84 13.92 -3.96 31.70 29.91 22.48 -2.05 -1.90 -2.30 -0.66 -0.57 -0.46 -2.58 -2.27 -4.41 -0.97 -0.86 -1.34 11.66 9.98 8.78 36.07 31.97 42.14 14.84 13.92 0.34 32.59 29.91 31.83 -2.57 -2.45 -2.18 -1.06 -0.98 -0.91 -3.16 -2.82 -5.14 -1.64 -1.46 -1.73 rehtnap 63
64 MUFOLD−Server 10.22 6.61 17.11 23.77 15.30 25.16 21.15 14.10 26.39 32.59 13.39 35.97 -2.07 -2.46 -1.33 -1.43 -1.68 -1.59 -1.81 -2.25 -1.44 -0.94 -1.48 -0.84 10.22 7.37 19.60 26.64 16.80 30.34 23.63 17.49 29.53 33.93 27.23 41.52 -2.91 -3.04 -1.38 -1.62 -1.91 -1.71 -2.16 -2.40 -1.95 -1.58 -1.58 -1.24 MUFOLD−Server 64
65 mariner1 9.74 7.49 10.45 25.82 18.99 25.98 17.58 13.28 16.37 25.89 22.02 30.02 -2.17 -2.28 -1.82 -1.30 -1.44 -1.53 -2.24 -2.35 -2.42 -1.18 -1.15 -1.06 12.26 9.94 14.40 33.61 26.50 40.25 21.98 20.70 27.88 27.68 24.70 30.02 -2.44 -2.46 -1.77 -1.21 -1.31 -1.04 -2.34 -2.02 -2.13 -1.88 -1.70 -1.82 mariner1 65
66 RANDOM 9.44 8.14 9.44 26.77 21.76 26.77 19.07 16.69 19.07 28.53 24.19 28.53 -2.23 -2.15 -1.89 -1.24 -1.25 -1.48 -2.06 -1.92 -2.16 -1.09 -1.07 -1.12 9.44 8.14 9.44 26.77 21.76 26.77 19.07 16.69 19.07 28.53 24.19 28.53 -3.09 -2.87 -2.13 -1.62 -1.60 -1.96 -2.68 -2.49 -3.09 -1.84 -1.73 -1.89 RANDOM 66
67 schenk−torda−server 9.01 7.65 11.73 22.13 19.81 22.77 15.93 13.55 23.10 25.00 20.54 27.62 -2.32 -2.25 -1.73 -1.54 -1.38 -1.75 -2.44 -2.32 -1.77 -1.22 -1.21 -1.15 9.98 8.53 12.44 25.00 19.95 29.74 20.60 17.67 23.10 28.57 27.38 27.62 -2.97 -2.78 -1.91 -1.72 -1.72 -1.75 -2.50 -2.38 -2.65 -1.84 -1.58 -1.94 schenk−torda−server 67
68 panther_server 7.21 6.13 2.54 20.49 16.94 24.12 14.56 12.00 14.01 16.96 13.99 7.61 -2.69 -2.56 -2.40 -1.64 -1.57 -1.66 -2.61 -2.52 -2.65 -1.51 -1.45 -1.90 19.95 17.39 3.96 20.49 16.94 24.12 45.60 39.93 41.03 16.96 13.99 9.89 -0.64 -0.77 -2.54 -1.99 -1.90 -2.14 0.36 0.25 -0.70 -2.40 -2.21 -2.83 panther_server 68
69 BHAGEERATH                                                                         -2.23 -2.15 -1.89 -1.24 -1.25 -1.48 -2.06 -1.92 -2.16 -1.09 -1.07 -1.12                                                                         -3.09 -2.87 -2.13 -1.62 -1.60 -1.96 -2.68 -2.49 -3.09 -1.84 -1.73 -1.89 BHAGEERATH 69
70 Fiser−M4T                                                                         -2.23 -2.15 -1.89 -1.24 -1.25 -1.48 -2.06 -1.92 -2.16 -1.09 -1.07 -1.12                                                                         -3.09 -2.87 -2.13 -1.62 -1.60 -1.96 -2.68 -2.49 -3.09 -1.84 -1.73 -1.89 Fiser−M4T 70
71 OLGAFS                                                                         -2.23 -2.15 -1.89 -1.24 -1.25 -1.48 -2.06 -1.92 -2.16 -1.09 -1.07 -1.12                                                                         -3.09 -2.87 -2.13 -1.62 -1.60 -1.96 -2.68 -2.49 -3.09 -1.84 -1.73 -1.89 OLGAFS 71
72 YASARA                                                                         -2.23 -2.15 -1.89 -1.24 -1.25 -1.48 -2.06 -1.92 -2.16 -1.09 -1.07 -1.12                                                                         -3.09 -2.87 -2.13 -1.62 -1.60 -1.96 -2.68 -2.49 -3.09 -1.84 -1.73 -1.89 YASARA 72
73 mahmood−torda−server                                                                         -2.23 -2.15 -1.89 -1.24 -1.25 -1.48 -2.06 -1.92 -2.16 -1.09 -1.07 -1.12                                                                         -3.09 -2.87 -2.13 -1.62 -1.60 -1.96 -2.68 -2.49 -3.09 -1.84 -1.73 -1.89 mahmood−torda−server 73
74 test_http_server_01                                                                         -2.23 -2.15 -1.89 -1.24 -1.25 -1.48 -2.06 -1.92 -2.16 -1.09 -1.07 -1.12                                                                         -3.09 -2.87 -2.13 -1.62 -1.60 -1.96 -2.68 -2.49 -3.09 -1.84 -1.73 -1.89 test_http_server_01 74