T0448
protein Q88SR8 from Lactobacillus plantarum
Target sequence:
>T0448 Q88SR8, Lactobacillus plantarum, 232 residues
MIAMIVKGGLAMAISNGHVSFKRPAWLGDSITANNGLATVHYHDILAADWDVERSDNLGISGSTIGSRYDAMAVRYQAIPEDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADYGVPHLSLYRDAGMTFAIPAQAAIYSVDTLHPNNAGHRVIARKLQSFLDSHFLEHHHHHH
Structure:
Determined by:
NESG
PDB ID: 3dc7
Cartoon diagram of 448: 3dc7 chain A residues
Domains: PyMOL of domains
Single domain protein.
Structure classification:
SGNH hydrolase from Flavodoxin-like fold.
CASP category:
Comparative modeling:medium.
Closest templates:
3bzw.
Target sequence - PDB file inconsistencies:
T0448 3dc7.pdb T0448.pdb PyMOL PyMOL of domains
T0448 1 MIAMIVKGGLAMAISNGHVSFKRPAWLGDSITANNGLATVHYHDILAADWDVERSDNLGISGSTIGSRYDAMAVRYQAIPEDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADYGVPHLSLYRDAGMTFAIPAQAAIYSVDTLHPNNAGHRVIARKLQSFLDSHFLEHHHHHH 232 ~~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~ 3dc7A 18 -----------------HVSFKRPAWLGDSITANNGLATVHYHDILAADWDVERSDNLGISGSTIGSRYDAMAVRYQAIPEDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADYGVPHLSLYRDAGMTFAIPAQAAIYSVDTLHPNNAGHRVIARKLQSFLDSHFLEHHHH-- 230
Residue change log: change 72, 109, 117, 118, 169, 186, MSE to MET;
Single domain protein: target 18-230 ; pdb 18-230
Sequence classification:
SGNH_hydrolase in CDD.
Server predictions:
T0448:pdb 18-230:seq 18-230:CM_medium;   alignment
First models for T0448:
Gaussian kernel density estimation
for GDT-TS scores of the
first server models, plotted at various bandwidths (=standard deviations).
The GDT-TS scores are shown as a spectrum along
the horizontal axis: each bar represents first server model. The bars are
colored
green, gray and black for top 10, bottom 25% and the rest of servers.
The family of curves with varying
bandwidth is shown. Bandwidth varies from 0.3 to 8.2 GDT-TS % units
with a step of 0.1, which corresponds to the
color ramp from magenta through blue to cyan. Thicker curves: red,
yellow-framed brown and black, correspond to bandwidths 1, 2 and 4
respectively.
click on a score in the table below to display the model in PyMOL
# | GROUP ↓ | TS ↓ | TR ↓ | CS ↓ | TS ↓ | TR ↓ | CS ↓ | TS ↓ | TR ↓ | CS ↓ | TS ↓ | TR ↓ | CS ↓ | ↓ GROUP | # |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T0448 | T0448 | T0448 | T0448 | ||||||||||||
First score | First Z-score | Best score | Best Z-score | ||||||||||||
1 | BAKER−ROBETTA | 76.29 | 71.36 | 67.18 | 1.55 | 1.66 | 1.49 | 76.29 | 71.36 | 67.18 | 1.28 | 1.30 | 1.21 | BAKER−ROBETTA | 1 |
2 | HHpred4 | 76.06 | 70.34 | 68.14 | 1.52 | 1.55 | 1.60 | 76.06 | 70.34 | 68.14 | 1.25 | 1.17 | 1.34 | HHpred4 | 2 |
3 | HHpred5 | 75.94 | 71.56 | 69.44 | 1.51 | 1.68 | 1.75 | 75.94 | 71.56 | 69.44 | 1.23 | 1.32 | 1.52 | HHpred5 | 3 |
4 | HHpred2 | 75.70 | 69.21 | 67.89 | 1.48 | 1.44 | 1.57 | 75.70 | 69.21 | 67.89 | 1.20 | 1.04 | 1.31 | HHpred2 | 4 |
5 | FFASsuboptimal | 75.47 | 70.15 | 66.61 | 1.45 | 1.53 | 1.42 | 75.82 | 71.52 | 67.44 | 1.22 | 1.32 | 1.25 | FFASsuboptimal | 5 |
6 | PS2−server | 74.41 | 68.70 | 62.54 | 1.33 | 1.38 | 0.95 | 74.41 | 68.70 | 62.54 | 1.02 | 0.97 | 0.56 | PS2−server | 6 |
7 | GS−KudlatyPred | 73.94 | 69.17 | 66.10 | 1.28 | 1.43 | 1.36 | 73.94 | 69.17 | 66.10 | 0.95 | 1.03 | 1.06 | GS−KudlatyPred | 7 |
8 | FFASstandard | 73.94 | 68.31 | 65.50 | 1.28 | 1.34 | 1.29 | 73.94 | 68.94 | 65.55 | 0.95 | 1.00 | 0.98 | FFASstandard | 8 |
9 | LEE−SERVER | 73.94 | 64.94 | 67.98 | 1.28 | 0.98 | 1.58 | 75.35 | 68.70 | 68.16 | 1.15 | 0.97 | 1.35 | LEE−SERVER | 9 |
10 | FAMSD | 73.83 | 69.21 | 63.09 | 1.26 | 1.44 | 1.02 | 73.83 | 69.21 | 64.59 | 0.94 | 1.04 | 0.85 | FAMSD | 10 |
11 | RAPTOR | 73.83 | 63.89 | 66.03 | 1.26 | 0.87 | 1.35 | 74.18 | 69.01 | 66.76 | 0.99 | 1.01 | 1.15 | RAPTOR | 11 |
12 | FFASflextemplate | 73.47 | 68.94 | 65.55 | 1.22 | 1.41 | 1.30 | 73.94 | 68.94 | 65.55 | 0.95 | 1.00 | 0.98 | FFASflextemplate | 12 |
13 | Fiser−M4T | 73.24 | 64.32 | 61.65 | 1.19 | 0.92 | 0.85 | 73.24 | 64.32 | 61.65 | 0.85 | 0.44 | 0.44 | Fiser−M4T | 13 |
14 | keasar−server | 73.00 | 68.08 | 65.38 | 1.17 | 1.32 | 1.28 | 73.94 | 68.86 | 65.56 | 0.95 | 0.99 | 0.98 | keasar−server | 14 |
15 | pipe_int | 73.00 | 68.08 | 63.72 | 1.17 | 1.32 | 1.09 | 73.00 | 68.08 | 63.72 | 0.82 | 0.90 | 0.73 | pipe_int | 15 |
16 | GS−MetaServer2 | 73.00 | 67.61 | 65.51 | 1.17 | 1.27 | 1.29 | 73.00 | 67.61 | 65.51 | 0.82 | 0.84 | 0.98 | GS−MetaServer2 | 16 |
17 | 3D−JIGSAW_AEP | 72.89 | 67.80 | 64.06 | 1.15 | 1.29 | 1.13 | 72.89 | 67.80 | 64.06 | 0.80 | 0.86 | 0.77 | 3D−JIGSAW_AEP | 17 |
18 | fais−server | 72.89 | 66.39 | 65.57 | 1.15 | 1.14 | 1.30 | 72.89 | 66.39 | 65.57 | 0.80 | 0.69 | 0.98 | fais−server | 18 |
19 | SAM−T02−server | 72.77 | 66.59 | 63.52 | 1.14 | 1.16 | 1.07 | 72.77 | 66.59 | 63.52 | 0.79 | 0.72 | 0.70 | SAM−T02−server | 19 |
20 | SAM−T06−server | 69.60 | 58.88 | 63.02 | 0.77 | 0.34 | 1.01 | 72.77 | 66.75 | 63.34 | 0.79 | 0.74 | 0.67 | SAM−T06−server | 20 |
21 | CpHModels | 69.48 | 64.63 | 57.82 | 0.76 | 0.95 | 0.41 | 69.48 | 64.63 | 57.82 | 0.32 | 0.48 | CpHModels | 21 | |
22 | MULTICOM−CMFR | 68.19 | 56.14 | 61.18 | 0.61 | 0.05 | 0.80 | 70.19 | 63.54 | 61.35 | 0.42 | 0.34 | 0.40 | MULTICOM−CMFR | 22 |
23 | Pushchino | 67.37 | 62.44 | 48.61 | 0.52 | 0.72 | 67.37 | 62.44 | 48.61 | 0.02 | 0.21 | Pushchino | 23 | ||
24 | YASARA | 66.90 | 60.17 | 56.50 | 0.46 | 0.48 | 0.26 | 69.72 | 63.54 | 59.72 | 0.36 | 0.34 | 0.17 | YASARA | 24 |
25 | MULTICOM−REFINE | 66.43 | 59.47 | 58.31 | 0.41 | 0.41 | 0.47 | 66.43 | 59.47 | 58.31 | MULTICOM−REFINE | 25 | |||
26 | 3DShot2 | 64.79 | 55.09 | 52.02 | 0.22 | 64.79 | 55.09 | 52.02 | 3DShot2 | 26 | |||||
27 | Phyre_de_novo | 62.68 | 57.67 | 53.60 | 0.22 | 66.43 | 59.16 | 54.68 | Phyre_de_novo | 27 | |||||
28 | Zhang−Server | 62.32 | 53.09 | 56.49 | 0.26 | 72.53 | 65.02 | 65.00 | 0.75 | 0.52 | 0.91 | Zhang−Server | 28 | ||
29 | pro−sp3−TASSER | 60.91 | 50.31 | 51.64 | 60.91 | 50.31 | 56.25 | pro−sp3−TASSER | 29 | ||||||
30 | METATASSER | 60.09 | 43.66 | 52.68 | 63.97 | 55.05 | 56.38 | METATASSER | 30 | ||||||
31 | FEIG | 59.62 | 48.20 | 53.21 | 60.33 | 53.99 | 53.21 | FEIG | 31 | ||||||
32 | MULTICOM−RANK | 59.51 | 51.84 | 50.97 | 66.90 | 58.73 | 58.91 | 0.06 | MULTICOM−RANK | 32 | |||||
33 | MULTICOM−CLUSTER | 59.51 | 51.84 | 50.97 | 70.19 | 65.96 | 60.56 | 0.42 | 0.64 | 0.29 | MULTICOM−CLUSTER | 33 | |||
34 | COMA−M | 59.27 | 50.59 | 51.86 | 59.62 | 53.91 | 51.86 | COMA−M | 34 | ||||||
35 | Pcons_multi | 59.16 | 50.94 | 51.96 | 59.16 | 51.56 | 51.96 | Pcons_multi | 35 | ||||||
36 | MUProt | 58.57 | 53.09 | 50.50 | 66.90 | 60.56 | 59.31 | 0.11 | MUProt | 36 | |||||
37 | BioSerf | 58.33 | 49.34 | 51.88 | 58.33 | 49.34 | 51.88 | BioSerf | 37 | ||||||
38 | Distill | 58.10 | 51.29 | 49.46 | 59.04 | 51.29 | 49.46 | Distill | 38 | ||||||
39 | Pcons_local | 57.86 | 47.85 | 45.80 | 57.86 | 47.85 | 46.46 | Pcons_local | 39 | ||||||
40 | SAM−T08−server | 57.28 | 49.22 | 50.57 | 75.23 | 71.01 | 66.78 | 1.13 | 1.25 | 1.15 | SAM−T08−server | 40 | |||
41 | Pcons_dot_net | 57.16 | 50.98 | 46.80 | 58.33 | 53.17 | 48.90 | Pcons_dot_net | 41 | ||||||
42 | Phyre2 | 57.04 | 51.41 | 49.43 | 66.31 | 60.05 | 53.76 | Phyre2 | 42 | ||||||
43 | PSI | 56.69 | 51.29 | 46.73 | 56.69 | 51.29 | 49.50 | PSI | 43 | ||||||
44 | MUSTER | 56.57 | 49.69 | 50.50 | 56.57 | 49.69 | 50.50 | MUSTER | 44 | ||||||
45 | Poing | 56.45 | 48.71 | 49.33 | 66.78 | 58.18 | 54.15 | Poing | 45 | ||||||
46 | 3D−JIGSAW_V3 | 56.22 | 50.74 | 45.82 | 72.42 | 67.88 | 63.37 | 0.74 | 0.87 | 0.68 | 3D−JIGSAW_V3 | 46 | |||
47 | Phragment | 56.22 | 50.51 | 49.25 | 66.43 | 59.39 | 53.74 | Phragment | 47 | ||||||
48 | ACOMPMOD | 55.40 | 44.52 | 45.85 | 55.40 | 46.63 | 45.85 | ACOMPMOD | 48 | ||||||
49 | GeneSilicoMetaServer | 54.81 | 48.40 | 46.75 | 56.92 | 48.40 | 46.75 | GeneSilicoMetaServer | 49 | ||||||
50 | circle | 54.70 | 43.90 | 44.38 | 73.94 | 69.17 | 64.44 | 0.95 | 1.03 | 0.83 | circle | 50 | |||
51 | mGenTHREADER | 53.17 | 47.53 | 43.96 | 53.17 | 47.53 | 43.96 | mGenTHREADER | 51 | ||||||
52 | LOOPP_Server | 52.11 | 45.77 | 43.54 | 67.02 | 62.79 | 58.17 | 0.25 | LOOPP_Server | 52 | |||||
53 | 3Dpro | 52.11 | 41.59 | 48.69 | 70.42 | 65.73 | 61.99 | 0.45 | 0.61 | 0.49 | 3Dpro | 53 | |||
54 | forecast | 51.99 | 44.01 | 42.85 | 52.11 | 45.54 | 49.24 | forecast | 54 | ||||||
55 | nFOLD3 | 51.99 | 42.84 | 43.96 | 72.42 | 67.80 | 63.78 | 0.74 | 0.86 | 0.74 | nFOLD3 | 55 | |||
56 | COMA | 51.76 | 44.95 | 45.14 | 60.33 | 52.66 | 51.86 | COMA | 56 | ||||||
57 | FUGUE_KM | 50.70 | 46.71 | 35.26 | 56.34 | 48.20 | 42.21 | FUGUE_KM | 57 | ||||||
58 | FOLDpro | 50.59 | 37.68 | 39.50 | 52.70 | 45.34 | 45.79 | FOLDpro | 58 | ||||||
59 | panther_server | 49.65 | 43.70 | 38.40 | 54.46 | 46.48 | 44.20 | panther_server | 59 | ||||||
60 | rehtnap | 48.83 | 44.29 | 30.44 | 51.06 | 45.15 | 33.45 | rehtnap | 60 | ||||||
61 | FALCON_CONSENSUS | 48.59 | 41.55 | 42.01 | 74.30 | 68.35 | 66.27 | 1.00 | 0.93 | 1.08 | FALCON_CONSENSUS | 61 | |||
62 | FALCON | 48.59 | 41.55 | 42.01 | 58.69 | 48.44 | 66.27 | 1.08 | FALCON | 62 | |||||
63 | MUFOLD−Server | 38.97 | 32.63 | 27.76 | 38.97 | 32.63 | 27.76 | MUFOLD−Server | 63 | ||||||
64 | mariner1 | 23.83 | 19.52 | 19.32 | 55.05 | 46.28 | 50.00 | mariner1 | 64 | ||||||
65 | MUFOLD−MD | 17.61 | 15.65 | 22.19 | 19.13 | 16.12 | 25.72 | MUFOLD−MD | 65 | ||||||
66 | RBO−Proteus | 15.26 | 13.81 | 21.30 | 15.26 | 13.81 | 22.20 | RBO−Proteus | 66 | ||||||
67 | RANDOM | 12.48 | 10.50 | 12.48 | 12.48 | 10.50 | 12.48 | RANDOM | 67 | ||||||
68 | OLGAFS | 9.27 | 7.86 | 9.27 | 7.86 | OLGAFS | 68 | ||||||||
69 | BHAGEERATH | BHAGEERATH | 69 | ||||||||||||
70 | Frankenstein | Frankenstein | 70 | ||||||||||||
71 | huber−torda−server | huber−torda−server | 71 | ||||||||||||
72 | mahmood−torda−server | mahmood−torda−server | 72 | ||||||||||||
73 | schenk−torda−server | schenk−torda−server | 73 | ||||||||||||
74 | test_http_server_01 | test_http_server_01 | 74 |