T0512

X-ray Targets
387 388 389 390
391 392 393 394
395 396 397 398
399 400 401 402
403 404 405 406
407 408 409 410
411 412 413 414
415 416 417 418
419 420 421 422
423 424 425 426
427 428 429 430
431 432 433 434
435 436 438 439
440 441 442 443
444 445 446 447
448 449 450 451
452 453 454 455
456 457 458 459
461 463 465 470
477 478 479 481
483 485 486 487
488 489 490 491
493 494 495 496
497 501 502 503
504 505 506 507
508 509 510 511
512 513 514

T0512

surface layer protein BACUNI_02894 from Bacteroides uniformis

Target type: Server only

Target sequence:

>T0512 surface layer protein BACUNI_02894, Bacteroides uniformis, 328 residues
ASGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGIIPGAFCWKLEHHHHHH

Structure:
Method: X-ray, res=1.9Å, R/Rfree=0.17/0.20
Determined by: NESG
PDB ID: 3dsm

3dsm cartoon
Cartoon diagram of 512: 3dsm

PyMOL of 3dsm

Domains:  PyMOL of domains

Single domain protein.

Structure classification:

7-bladed β-propeller fold.

CASP category:

Comparative modeling:hard.

Closest templates:

1l0q, 1pby, 1jmx.

Target sequence - PDB file inconsistencies:

T0512    3dsm.pdb    T0512.pdb    PyMOL    PyMOL of domains    

T0512    1 ASGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGIIPGAFCWKLEHHHHHH 328
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~
3dsmA   15 ASGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGIIPGAFCWKLEHHHHH- 341

Residue change log: change 63, 140, 142, 150, 193, 199, 263, MSE to MET;

Single domain protein: target 1-327 ; pdb 15-341

Sequence classification:

Close family not in Pfam. COG33198 in CDD.

Server predictions:

T0512:pdb 15-341:seq 1-327:CM_hard;   alignment

distribution of first scores
First models for T0512: Gaussian kernel density estimation for GDT-TS scores of the first server models, plotted at various bandwidths (=standard deviations). The GDT-TS scores are shown as a spectrum along the horizontal axis: each bar represents first server model. The bars are colored green, gray and black for top 10, bottom 25% and the rest of servers. The family of curves with varying bandwidth is shown. Bandwidth varies from 0.3 to 8.2 GDT-TS % units with a step of 0.1, which corresponds to the color ramp from magenta through blue to cyan. Thicker curves: red, yellow-framed brown and black, correspond to bandwidths 1, 2 and 4 respectively.

click on a score in the table below to display the model in PyMOL

# GROUP ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ ↓ GROUP #
T0512 T0512 T0512 T0512
First score First Z-score Best score Best Z-score
1 LEE−SERVER 66.06 56.37 69.14 1.64 1.68 1.92 67.36 60.04 69.14 2.08 2.36 2.06 LEE−SERVER 1
2 COMA−M 65.44 58.66 63.93 1.57 1.97 1.41 65.44 58.66 63.93 1.78 2.13 1.44 COMA−M 2
3 HHpred2 65.21 56.70 73.63 1.55 1.72 2.35 65.21 56.70 73.63 1.74 1.81 2.60 HHpred2 3
4 GS−KudlatyPred 63.38 52.88 64.25 1.34 1.25 1.44 63.38 52.88 64.25 1.45 1.20 1.48 GS−KudlatyPred 4
5 fais−server 62.31 55.38 64.62 1.22 1.56 1.48 62.31 55.38 64.62 1.28 1.60 1.52 fais−server 5
6 FFASsuboptimal 62.16 53.03 67.72 1.21 1.27 1.78 62.16 53.03 67.72 1.26 1.22 1.89 FFASsuboptimal 6
7 COMA 61.54 52.37 62.65 1.14 1.18 1.29 62.08 52.37 63.93 1.25 1.11 1.44 COMA 7
8 RAPTOR 61.01 53.41 63.97 1.08 1.31 1.42 61.01 53.41 63.97 1.08 1.28 1.44 RAPTOR 8
9 BioSerf 61.01 52.91 60.02 1.08 1.25 1.04 61.01 52.91 60.02 1.08 1.20 0.97 BioSerf 9
10 PS2−server 60.63 51.53 64.17 1.03 1.08 1.44 60.63 51.53 64.17 1.02 0.98 1.47 PS2−server 10
11 HHpred4 60.09 50.10 62.32 0.97 0.90 1.26 60.09 50.10 62.32 0.93 0.75 1.24 HHpred4 11
12 nFOLD3 59.02 49.31 56.18 0.85 0.80 0.67 59.02 49.31 56.18 0.76 0.62 0.51 nFOLD3 12
13 Zhang−Server 58.87 49.13 58.11 0.84 0.78 0.85 59.40 50.02 58.20 0.82 0.73 0.75 Zhang−Server 13
14 FFASstandard 58.49 49.16 56.81 0.79 0.78 0.73 58.49 49.16 56.81 0.68 0.59 0.58 FFASstandard 14
15 FEIG 57.19 47.76 56.62 0.65 0.61 0.71 59.10 48.14 57.56 0.78 0.43 0.67 FEIG 15
16 MUSTER 56.96 46.25 55.40 0.62 0.42 0.59 57.42 48.24 55.40 0.51 0.45 0.41 MUSTER 16
17 BAKER−ROBETTA 56.88 48.93 53.12 0.61 0.76 0.37 60.09 51.53 61.30 0.93 0.98 1.12 BAKER−ROBETTA 17
18 Pcons_dot_net 56.58 47.22 52.22 0.58 0.54 0.29 58.87 47.22 56.90 0.74 0.28 0.59 Pcons_dot_net 18
19 Pushchino 56.50 48.85 51.23 0.57 0.75 0.19 56.50 48.85 51.23 0.36 0.54 -0.09 Pushchino 19
20 PSI 56.50 48.09 55.31 0.57 0.65 0.58 56.50 48.09 55.31 0.36 0.42 0.40 PSI 20
21 FAMSD 56.50 47.73 55.10 0.57 0.61 0.56 56.50 48.01 55.10 0.36 0.41 0.38 FAMSD 21
22 FFASflextemplate 56.42 46.79 56.30 0.56 0.49 0.68 58.26 50.36 56.30 0.64 0.79 0.52 FFASflextemplate 22
23 circle 56.35 47.07 54.85 0.55 0.53 0.54 56.65 48.52 55.10 0.39 0.49 0.38 circle 23
24 Pcons_multi 56.35 46.76 54.38 0.55 0.49 0.49 56.58 48.16 54.38 0.38 0.43 0.29 Pcons_multi 24
25 forecast 56.19 47.99 53.74 0.54 0.64 0.43 56.19 47.99 53.80 0.32 0.40 0.22 forecast 25
26 CpHModels 56.19 47.02 50.63 0.54 0.52 0.13 56.19 47.02 50.63 0.32 0.25 -0.16 CpHModels 26
27 pro−sp3−TASSER 55.89 47.12 53.49 0.50 0.53 0.41 56.19 47.32 55.61 0.32 0.30 0.44 pro−sp3−TASSER 27
28 MULTICOM−REFINE 54.89 44.80 49.63 0.39 0.24 0.04 54.89 44.80 49.63 0.11 -0.11 -0.28 MULTICOM−REFINE 28
29 MULTICOM−CLUSTER 54.89 44.44 49.74 0.39 0.20 0.05 54.89 44.44 49.74 0.11 -0.17 -0.27 MULTICOM−CLUSTER 29
30 MULTICOM−RANK 54.59 43.94 46.03 0.36 0.14 -0.31 54.66 46.71 49.72 0.07 0.20 -0.27 MULTICOM−RANK 30
31 METATASSER 54.51 44.27 51.35 0.35 0.18 0.20 55.66 48.06 53.89 0.23 0.42 0.23 METATASSER 31
32 pipe_int 52.98 44.57 46.49 0.17 0.21 -0.26 52.98 44.57 46.49 -0.19 -0.15 -0.66 pipe_int 32
33 GeneSilicoMetaServer 51.30 40.95 42.06 -0.01 -0.24 -0.69 54.20 46.33 49.04 0.00 0.14 -0.35 GeneSilicoMetaServer 33
34 3DShot2 51.07 39.58 41.42 -0.04 -0.41 -0.75 51.07 39.58 41.42 -0.49 -0.96 -1.27 3DShot2 34
35 mGenTHREADER 50.23 42.94 47.81 -0.13 0.01 -0.14 50.23 42.94 47.81 -0.62 -0.41 -0.50 mGenTHREADER 35
36 Pcons_local 49.31 39.65 42.97 -0.24 -0.40 -0.60 56.19 44.34 51.89 0.32 -0.19 -0.01 Pcons_local 36
37 Phyre_de_novo 48.70 37.77 50.04 -0.31 -0.63 0.08 48.70 37.77 50.04 -0.87 -1.25 -0.23 Phyre_de_novo 37
38 MULTICOM−CMFR 48.32 36.24 44.66 -0.35 -0.82 -0.44 54.89 44.19 49.59 0.11 -0.21 -0.28 MULTICOM−CMFR 38
39 HHpred5 48.24 38.61 52.62 -0.36 -0.53 0.33 48.24 38.61 52.62 -0.94 -1.11 0.08 HHpred5 39
40 MUProt 48.09 36.52 44.88 -0.37 -0.79 -0.42 55.05 43.58 49.65 0.14 -0.31 -0.28 MUProt 40
41 SAM−T02−server 47.71 40.37 35.79 -0.42 -0.31 -1.29 47.71 40.37 35.79 -1.02 -0.83 -1.94 SAM−T02−server 41
42 3D−JIGSAW_V3 45.03 39.17 34.56 -0.72 -0.46 -1.41 45.34 39.78 34.75 -1.40 -0.92 -2.07 3D−JIGSAW_V3 42
43 3D−JIGSAW_AEP 43.58 35.09 38.63 -0.88 -0.96 -1.02 43.58 35.09 38.63 -1.67 -1.68 -1.60 3D−JIGSAW_AEP 43
44 Poing 42.35 35.12 44.27 -1.02 -0.96 -0.48 44.49 35.12 44.27 -1.53 -1.68 -0.92 Poing 44
45 Phragment 42.35 35.12 44.22 -1.02 -0.96 -0.48 44.95 35.12 44.22 -1.46 -1.68 -0.93 Phragment 45
46 FALCON_CONSENSUS 42.05 36.39 36.86 -1.05 -0.80 -1.19 50.46 43.02 48.48 -0.59 -0.40 -0.42 FALCON_CONSENSUS 46
47 FALCON 42.05 36.39 36.86 -1.05 -0.80 -1.19 50.46 43.02 48.48 -0.59 -0.40 -0.42 FALCON 47
48 Phyre2 42.05 34.81 43.85 -1.05 -1.00 -0.52 45.11 34.81 43.85 -1.43 -1.73 -0.97 Phyre2 48
49 GS−MetaServer2 41.82 35.91 30.32 -1.08 -0.86 -1.82 56.80 49.87 54.25 0.41 0.71 0.28 GS−MetaServer2 49
50 ACOMPMOD 41.82 32.90 39.61 -1.08 -1.24 -0.93 51.22 42.71 46.61 -0.47 -0.45 -0.64 ACOMPMOD 50
51 SAM−T06−server 40.98 32.75 41.97 -1.17 -1.25 -0.70 48.55 41.62 41.97 -0.89 -0.63 -1.20 SAM−T06−server 51
52 MUFOLD−Server 40.67 32.39 35.81 -1.21 -1.30 -1.29 40.67 32.39 35.82 -2.13 -2.12 -1.94 MUFOLD−Server 52
53 SAM−T08−server 37.46 32.72 45.09 -1.57 -1.26 -0.40 54.59 47.96 46.45 0.06 0.40 -0.66 SAM−T08−server 53
54 LOOPP_Server 35.02 27.73 32.40 -1.84 -1.88 -1.62 37.16 30.58 38.58 -2.69 -2.41 -1.61 LOOPP_Server 54
55 panther_server 34.40 27.68 33.58 -1.91 -1.88 -1.51 44.80 37.21 34.07 -1.48 -1.34 -2.15 panther_server 55
56 3Dpro 29.89 25.31 24.50 -2.42 -2.18 -2.38 40.52 33.49 41.44 -2.16 -1.94 -1.26 3Dpro 56
57 FOLDpro 29.89 25.31 24.50 -2.42 -2.18 -2.38 40.52 33.49 41.44 -2.16 -1.94 -1.26 FOLDpro 57
58 FUGUE_KM 23.24 21.00 21.98 -3.17 -2.72 -2.62 42.12 36.42 35.21 -1.90 -1.47 -2.01 FUGUE_KM 58
59 mariner1 17.12 13.61 19.06 -3.86 -3.63 -2.90 46.25 37.41 48.67 -1.25 -1.31 -0.39 mariner1 59
60 RBO−Proteus 13.23 10.98 30.59 -4.29 -3.96 -1.79 16.36 13.10 31.80 -5.97 -5.24 -2.42 RBO−Proteus 60
61 MUFOLD−MD 12.08 11.29 26.92 -4.42 -3.92 -2.15 12.08 11.29 27.30 -6.65 -5.54 -2.96 MUFOLD−MD 61
62 RANDOM 11.02 9.03 11.02 -4.54 -4.20 -3.68 11.02 9.03 11.02 -6.81 -5.90 -4.92 RANDOM 62
63 Distill 7.11 5.28 14.91 -4.98 -4.67 -3.30 8.33 6.27 14.94 -7.24 -6.35 -4.45 Distill 63
64 schenk−torda−server 6.58 5.50 8.25 -5.04 -4.64 -3.95 6.58 5.86 9.08 -7.51 -6.42 -5.15 schenk−torda−server 64
65 BHAGEERATH                   -4.54 -4.20 -3.68                   -6.81 -5.90 -4.92 BHAGEERATH 65
66 Fiser−M4T                   -4.54 -4.20 -3.68                   -6.81 -5.90 -4.92 Fiser−M4T 66
67 Frankenstein                   -4.54 -4.20 -3.68                   -6.81 -5.90 -4.92 Frankenstein 67
68 OLGAFS                   -4.54 -4.20 -3.68                   -6.81 -5.90 -4.92 OLGAFS 68
69 YASARA                   -4.54 -4.20 -3.68                   -6.81 -5.90 -4.92 YASARA 69
70 huber−torda−server                   -4.54 -4.20 -3.68                   -6.81 -5.90 -4.92 huber−torda−server 70
71 keasar−server                   -4.54 -4.20 -3.68                   -6.81 -5.90 -4.92 keasar−server 71
72 mahmood−torda−server                   -4.54 -4.20 -3.68                   -6.81 -5.90 -4.92 mahmood−torda−server 72
73 rehtnap                   -4.54 -4.20 -3.68                   -6.81 -5.90 -4.92 rehtnap 73
74 test_http_server_01                   -4.54 -4.20 -3.68                   -6.81 -5.90 -4.92 test_http_server_01 74