T0444

X-ray Targets
387 388 389 390
391 392 393 394
395 396 397 398
399 400 401 402
403 404 405 406
407 408 409 410
411 412 413 414
415 416 417 418
419 420 421 422
423 424 425 426
427 428 429 430
431 432 433 434
435 436 438 439
440 441 442 443
444 445 446 447
448 449 450 451
452 453 454 455
456 457 458 459
461 463 465 470
477 478 479 481
483 485 486 487
488 489 490 491
493 494 495 496
497 501 502 503
504 505 506 507
508 509 510 511
512 513 514

T0444

ribonucleotide reductase subunit M2B from Homo sapiens

Target type: Server only

Target sequence:

>T0444 MM30C, Homo sapiens, 326 residues
MHHHHHHSSGVDLGTENLYFQSMSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTN

Structure:
Method: X-ray, res=2.8Å, R/Rfree=0.21/0.26
Determined by: SGC
PDB ID: 2vux

2vux_A cartoon
Cartoon diagram of 444: 2vux chain A

PyMOL of 2vux

Domains:  PyMOL of domains

Single domain protein.

Structure classification:

Ferritin fold.

CASP category:

Comparative modeling:easy.

Closest templates:

1jk0.

Target sequence - PDB file inconsistencies:

T0444    2vux.pdb    T0444.pdb    PyMOL    PyMOL of domains    

T0444    1 MHHHHHHSSGVDLGTENLYFQSMSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTN 326
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~||||||||~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~
2vuxA   30 ---------------------------------NEEPLLRK-----VIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAAS------NLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFM---------- 312

Single domain protein: target 34-41, 47-103, 110-316 ; pdb 30-37, 43-99, 106-312

Sequence classification:

Ribonucleotide reductase, small chain (Ribonuc_red_sm) in Pfam.

Server predictions:

T0444:pdb 30-312:seq 34-316:CM_easy;   alignment

distribution of first scores
First models for T0444: Gaussian kernel density estimation for GDT-TS scores of the first server models, plotted at various bandwidths (=standard deviations). The GDT-TS scores are shown as a spectrum along the horizontal axis: each bar represents first server model. The bars are colored green, gray and black for top 10, bottom 25% and the rest of servers. The family of curves with varying bandwidth is shown. Bandwidth varies from 0.3 to 8.2 GDT-TS % units with a step of 0.1, which corresponds to the color ramp from magenta through blue to cyan. Thicker curves: red, yellow-framed brown and black, correspond to bandwidths 1, 2 and 4 respectively.

click on a score in the table below to display the model in PyMOL

# GROUP ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ ↓ GROUP #
T0444 T0444 T0444 T0444
First score First Z-score Best score Best Z-score
1 MUFOLD−Server 94.67 93.93 89.44 2.35 2.65 1.01 94.67 93.93 89.44 1.29 1.25 1.08 MUFOLD−Server 1
2 Poing 93.84 93.11 88.63 2.04 2.43 0.76 93.84 93.11 88.63 1.01 1.08 0.48 Poing 2
3 Phyre2 93.84 93.11 88.63 2.04 2.43 0.76 93.84 93.11 88.63 1.01 1.08 0.48 Phyre2 3
4 Phragment 93.84 93.11 88.63 2.04 2.43 0.76 93.84 93.11 88.63 1.01 1.08 0.48 Phragment 4
5 HHpred5 93.84 92.62 89.68 2.04 2.30 1.09 93.84 92.62 89.68 1.01 0.98 1.26 HHpred5 5
6 rehtnap 91.82 90.96 85.77 1.29 1.86 -0.13 93.20 92.83 86.88 0.79 1.02 -0.83 rehtnap 6
7 FFASstandard 91.08 86.00 84.08 1.02 0.54 -0.66 94.48 93.63 89.85 1.23 1.19 1.39 FFASstandard 7
8 FFASflextemplate 90.99 88.60 84.83 0.99 1.23 -0.42 90.99 88.60 84.83 0.03 0.14 -2.36 FFASflextemplate 8
9 FFASsuboptimal 90.99 88.60 84.83 0.99 1.23 -0.42 90.99 88.60 84.83 0.03 0.14 -2.36 FFASsuboptimal 9
10 Phyre_de_novo 90.53 86.37 88.91 0.82 0.64 0.85 93.66 92.92 88.91 0.95 1.04 0.69 Phyre_de_novo 10
11 panther_server 90.26 87.44 81.16 0.72 0.92 -1.57 94.39 94.03 86.41 1.19 1.27 -1.18 panther_server 11
12 Zhang−Server 89.98 87.59 88.76 0.61 0.96 0.80 89.98 87.59 88.76 -0.31 -0.08 0.58 Zhang−Server 12
13 MUSTER 89.61 84.65 88.37 0.48 0.18 0.68 90.72 87.10 88.37 -0.06 -0.18 0.29 MUSTER 13
14 GeneSilicoMetaServer 89.43 85.69 87.85 0.41 0.46 0.52 94.58 94.09 90.06 1.26 1.29 1.55 GeneSilicoMetaServer 14
15 Fiser−M4T 88.97 85.72 88.47 0.24 0.46 0.71 88.97 85.72 88.47 -0.66 -0.47 0.36 Fiser−M4T 15
16 3Dpro 88.97 84.93 87.22 0.24 0.25 0.32 89.61 84.93 87.48 -0.44 -0.63 -0.38 3Dpro 16
17 OLGAFS 88.88 84.71 86.05 0.21 0.19 -0.04 89.34 85.42 87.69 -0.53 -0.53 -0.22 OLGAFS 17
18 Pushchino 88.79 84.93 87.69 0.17 0.25 0.47 88.79 84.93 87.69 -0.72 -0.63 -0.22 Pushchino 18
19 pipe_int 88.79 84.93 87.69 0.17 0.25 0.47 94.39 91.02 88.12 1.19 0.64 0.10 pipe_int 19
20 3D−JIGSAW_AEP 88.79 84.56 87.29 0.17 0.16 0.34 89.06 84.56 87.29 -0.62 -0.71 -0.52 3D−JIGSAW_AEP 20
21 RAPTOR 88.79 84.01 88.03 0.17 0.01 0.57 93.20 92.16 88.19 0.79 0.88 0.15 RAPTOR 21
22 LEE−SERVER 88.60 84.74 87.79 0.10 0.20 0.50 88.60 85.08 87.95 -0.78 -0.60 -0.03 LEE−SERVER 22
23 FAMSD 88.60 84.19 86.32 0.10 0.06 0.04 88.69 84.71 86.87 -0.75 -0.68 -0.84 FAMSD 23
24 MUProt 88.60 82.66 88.29 0.10 -0.35 0.65 88.60 83.76 88.29 -0.78 -0.88 0.23 MUProt 24
25 MULTICOM−REFINE 88.51 83.67 88.30 0.07 -0.08 0.66 88.60 83.95 88.30 -0.78 -0.84 0.23 MULTICOM−REFINE 25
26 Pcons_local 88.42 83.15 87.84 0.04 -0.22 0.51 95.13 94.64 89.77 1.45 1.40 1.33 Pcons_local 26
27 Pcons_dot_net 88.42 83.15 87.84 0.04 -0.22 0.51 88.60 83.33 87.84 -0.78 -0.97 -0.11 Pcons_dot_net 27
28 Pcons_multi 88.42 83.15 87.84 0.04 -0.22 0.51 89.80 85.39 88.65 -0.37 -0.54 0.49 Pcons_multi 28
29 circle 88.42 82.66 85.53 0.04 -0.35 -0.20 88.88 84.90 87.05 -0.69 -0.64 -0.70 circle 29
30 MULTICOM−CMFR 88.42 82.05 87.83 0.04 -0.51 0.51 95.68 95.37 92.18 1.63 1.55 3.13 MULTICOM−CMFR 30
31 SAM−T08−server 88.33 83.92 86.39 0.00 -0.02 0.06 88.33 83.92 86.39 -0.87 -0.85 -1.19 SAM−T08−server 31
32 HHpred4 88.33 82.35 87.69 0.00 -0.43 0.47 88.33 82.35 87.69 -0.87 -1.17 -0.22 HHpred4 32
33 HHpred2 88.33 82.35 87.69 0.00 -0.43 0.47 88.33 82.35 87.69 -0.87 -1.17 -0.22 HHpred2 33
34 PSI 88.23 83.58 87.84 -0.03 -0.11 0.51 94.94 94.52 89.99 1.38 1.38 1.50 PSI 34
35 pro−sp3−TASSER 88.14 84.16 87.39 -0.07 0.05 0.37 88.60 84.99 87.73 -0.78 -0.62 -0.19 pro−sp3−TASSER 35
36 nFOLD3 88.14 82.97 87.39 -0.07 -0.27 0.37 88.79 84.93 87.69 -0.72 -0.63 -0.22 nFOLD3 36
37 fais−server 88.14 81.59 87.71 -0.07 -0.63 0.47 94.58 93.84 89.74 1.26 1.23 1.31 fais−server 37
38 PS2−server 88.05 83.58 86.85 -0.10 -0.11 0.21 95.96 95.47 90.16 1.73 1.58 1.62 PS2−server 38
39 Frankenstein 88.05 83.33 86.70 -0.10 -0.17 0.16 94.03 93.54 88.91 1.07 1.17 0.69 Frankenstein 39
40 MULTICOM−CLUSTER 87.96 82.81 88.14 -0.13 -0.31 0.61 88.23 82.97 88.31 -0.91 -1.04 0.24 MULTICOM−CLUSTER 40
41 COMA−M 87.87 83.76 86.73 -0.17 -0.06 0.17 87.87 83.76 86.85 -1.03 -0.88 -0.85 COMA−M 41
42 GS−KudlatyPred 87.87 82.84 86.20 -0.17 -0.30 0.00 87.87 82.84 86.20 -1.03 -1.07 -1.34 GS−KudlatyPred 42
43 forecast 87.87 82.54 86.78 -0.17 -0.38 0.18 94.30 93.47 88.79 1.16 1.16 0.60 forecast 43
44 huber−torda−server 87.87 81.92 86.00 -0.17 -0.55 -0.06 94.48 93.75 89.41 1.23 1.22 1.06 huber−torda−server 44
45 BioSerf 87.78 83.49 86.33 -0.20 -0.13 0.04 87.78 83.49 86.33 -1.06 -0.94 -1.24 BioSerf 45
46 FEIG 87.59 82.94 86.75 -0.27 -0.28 0.18 87.78 83.49 87.20 -1.06 -0.94 -0.59 FEIG 46
47 3DShot2 87.59 81.28 85.70 -0.27 -0.72 -0.15 87.59 81.28 85.70 -1.13 -1.40 -1.71 3DShot2 47
48 keasar−server 87.50 83.39 86.59 -0.30 -0.16 0.13 87.68 83.39 87.11 -1.10 -0.96 -0.66 keasar−server 48
49 YASARA 87.50 83.39 85.63 -0.30 -0.16 -0.17 87.50 83.39 87.26 -1.16 -0.96 -0.54 YASARA 49
50 mGenTHREADER 87.41 83.67 85.28 -0.34 -0.08 -0.28 87.41 83.67 85.28 -1.19 -0.90 -2.02 mGenTHREADER 50
51 GS−MetaServer2 87.41 83.36 85.75 -0.34 -0.16 -0.14 94.67 94.18 90.04 1.29 1.31 1.53 GS−MetaServer2 51
52 ACOMPMOD 87.22 83.18 81.90 -0.41 -0.21 -1.34 87.22 83.18 81.90 -1.25 -1.00 -4.55 ACOMPMOD 52
53 BAKER−ROBETTA 87.13 81.25 84.76 -0.44 -0.72 -0.44 88.05 82.05 86.58 -0.97 -1.24 -1.05 BAKER−ROBETTA 53
54 mariner1 87.04 82.54 86.90 -0.47 -0.38 0.22 94.85 94.36 89.74 1.35 1.34 1.31 mariner1 54
55 3D−JIGSAW_V3 86.86 79.50 84.86 -0.54 -1.19 -0.41 95.31 94.70 90.26 1.51 1.41 1.70 3D−JIGSAW_V3 55
56 MULTICOM−RANK 86.31 82.20 87.94 -0.74 -0.47 0.55 87.96 82.81 88.14 -1.00 -1.08 0.11 MULTICOM−RANK 56
57 SAM−T06−server 85.75 80.24 85.28 -0.95 -0.99 -0.28 87.04 83.33 85.28 -1.31 -0.97 -2.02 SAM−T06−server 57
58 CpHModels 85.57 81.04 85.84 -1.02 -0.78 -0.11 85.57 81.04 85.84 -1.82 -1.45 -1.61 CpHModels 58
59 FALCON 81.71 77.97 76.90 -2.44 -1.60 -2.89 89.52 83.70 87.47 -0.47 -0.89 -0.39 FALCON 59
60 METATASSER 79.41 76.53 73.59 -3.29 -1.98 -3.92 89.15 84.68 87.61 -0.59 -0.69 -0.28 METATASSER 60
61 Distill 77.67 69.88 71.85 -3.93 -3.75 -4.46 78.77 73.50 76.73 -4.14 -3.03 -8.41 Distill 61
62 COMA 73.53 68.84 66.34 -5.46 -4.02 -6.18 88.05 83.21 86.85 -0.97 -0.99 -0.85 COMA 62
63 FOLDpro 70.86 65.23 63.30 -6.45 -4.98 -7.13 94.58 94.09 88.92 1.26 1.29 0.70 FOLDpro 63
64 SAM−T02−server 70.77 64.71 63.74 -6.48 -5.12 -6.99 94.48 93.75 89.41 1.23 1.22 1.06 SAM−T02−server 64
65 FALCON_CONSENSUS 55.61 47.15 44.06 -12.09 -9.79 -13.12 81.71 77.97 76.90 -3.13 -2.09 -8.29 FALCON_CONSENSUS 65
66 MUFOLD−MD 20.59 18.75 35.85 -25.03 -17.34 -15.67 27.48 22.46 38.80 -21.64 -13.73 -36.76 MUFOLD−MD 66
67 RBO−Proteus 15.53 14.52 30.30 -26.90 -18.46 -17.40 16.09 14.61 32.38 -25.52 -15.37 -41.56 RBO−Proteus 67
68 RANDOM 12.79 11.24 12.79 -27.91 -19.34 -22.86 12.79 11.24 12.79 -26.65 -16.08 -56.19 RANDOM 68
69 schenk−torda−server 7.08 6.04 -7.61 -30.02 -20.72 -29.21 8.27 7.84 -4.46 -28.19 -16.79 -69.09 schenk−torda−server 69
70 BHAGEERATH                   -27.91 -19.34 -22.86                   -26.65 -16.08 -56.19 BHAGEERATH 70
71 FUGUE_KM                   -27.91 -19.34 -22.86                   -18.12 -12.98 -56.19 FUGUE_KM 71
72 LOOPP_Server                   -27.91 -19.34 -22.86                   -26.65 -16.08 -56.19 LOOPP_Server 72
73 mahmood−torda−server                   -27.91 -19.34 -22.86                   -26.65 -16.08 -56.19 mahmood−torda−server 73
74 test_http_server_01                   -27.91 -19.34 -22.86                   -26.65 -16.08 -56.19 test_http_server_01 74