| Protein ID Link to complete analysis report |
Lenth Link to complete analysis report |
Similarity with COG COG1074 |
All predicted COG clusters |
|---|---|---|---|
| 1g013858m | 435 | hhsearch probability: 91.26 Identity: 22% subject length: 1139 Length of aligned reigon: 58 Coverage over query: 157-217 Coverage over subject: 15-72 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1485, Predicted ATPase [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] |
| 1g018574m | 354 | hhsearch probability: 93.18 Identity: 25% subject length: 1139 Length of aligned reigon: 56 Coverage over query: 69-124 Coverage over subject: 15-72 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] |
| 1g022383m | 298 | hhsearch probability: 92.94 Identity: 25% subject length: 1139 Length of aligned reigon: 57 Coverage over query: 68-124 Coverage over subject: 14-72 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] |
| 1g019337m | 342 | hhsearch probability: 93.28 Identity: 21% subject length: 1139 Length of aligned reigon: 58 Coverage over query: 62-122 Coverage over subject: 14-71 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] |
| 1g019359m | 342 | hhsearch probability: 93.28 Identity: 21% subject length: 1139 Length of aligned reigon: 58 Coverage over query: 62-122 Coverage over subject: 14-71 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] |
| 1g017573m | 369 | hhsearch probability: 93.74 Identity: 30% subject length: 1139 Length of aligned reigon: 56 Coverage over query: 32-87 Coverage over subject: 15-72 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] |
| 1g014314m | 427 | hhsearch probability: 90.98 Identity: 23% subject length: 1139 Length of aligned reigon: 57 Coverage over query: 82-138 Coverage over subject: 15-73 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] |
| 1g041899m | 650 | hhsearch probability: 91.62 Identity: 16% subject length: 1139 Length of aligned reigon: 57 Coverage over query: 23-79 Coverage over subject: 14-74 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g018420m | 356 | hhsearch probability: 93.46 Identity: 22% subject length: 1139 Length of aligned reigon: 58 Coverage over query: 12-69 Coverage over subject: 16-75 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g015595m | 404 | hhsearch probability: 93.09 Identity: 25% subject length: 1139 Length of aligned reigon: 56 Coverage over query: 69-124 Coverage over subject: 15-72 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] |
| 1g015093m | 413 | hhsearch probability: 93.05 Identity: 27% subject length: 1139 Length of aligned reigon: 56 Coverage over query: 76-131 Coverage over subject: 15-72 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] |
| 1g022724m | 293 | hhsearch probability: 92.96 Identity: 25% subject length: 1139 Length of aligned reigon: 55 Coverage over query: 69-123 Coverage over subject: 15-71 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] |
| 1g014486m | 423 | hhsearch probability: 91.21 Identity: 23% subject length: 1139 Length of aligned reigon: 57 Coverage over query: 82-138 Coverage over subject: 15-73 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1855, ATPase (PilT family) [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g014801m | 418 | hhsearch probability: 91.69 Identity: 23% subject length: 1139 Length of aligned reigon: 56 Coverage over query: 73-128 Coverage over subject: 15-72 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1485, Predicted ATPase [General function prediction only] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] |
| 1g011104m | 493 | hhsearch probability: 90.40 Identity: 22% subject length: 1139 Length of aligned reigon: 54 Coverage over query: 141-194 Coverage over subject: 17-72 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] |
| 1g015158m | 412 | hhsearch probability: 92.31 Identity: 31% subject length: 1139 Length of aligned reigon: 55 Coverage over query: 75-129 Coverage over subject: 15-71 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1485, Predicted ATPase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG5410, Uncharacterized protein conserved in bacteria [Function unknown] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] |
| 1g015134m | 412 | hhsearch probability: 92.31 Identity: 31% subject length: 1139 Length of aligned reigon: 55 Coverage over query: 75-129 Coverage over subject: 15-71 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1485, Predicted ATPase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG5410, Uncharacterized protein conserved in bacteria [Function unknown] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] |
| 1g043110m | 316 | hhsearch probability: 90.21 Identity: 28% subject length: 1139 Length of aligned reigon: 61 Coverage over query: 72-136 Coverage over subject: 15-75 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g017196m | 375 | hhsearch probability: 91.31 Identity: 21% subject length: 1139 Length of aligned reigon: 57 Coverage over query: 68-124 Coverage over subject: 15-72 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g015129m | 413 | hhsearch probability: 94.39 Identity: 30% subject length: 1139 Length of aligned reigon: 56 Coverage over query: 76-131 Coverage over subject: 15-72 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1485, Predicted ATPase [General function prediction only] |
| 1g015074m | 413 | hhsearch probability: 94.39 Identity: 30% subject length: 1139 Length of aligned reigon: 56 Coverage over query: 76-131 Coverage over subject: 15-72 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1485, Predicted ATPase [General function prediction only] |
| 1g015098m | 413 | hhsearch probability: 94.39 Identity: 30% subject length: 1139 Length of aligned reigon: 56 Coverage over query: 76-131 Coverage over subject: 15-72 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1485, Predicted ATPase [General function prediction only] |
| 1g015454m | 406 | hhsearch probability: 93.55 Identity: 25% subject length: 1139 Length of aligned reigon: 55 Coverage over query: 69-123 Coverage over subject: 15-71 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g006311m | 651 | hhsearch probability: 90.49 Identity: 21% subject length: 1139 Length of aligned reigon: 58 Coverage over query: 565-630 Coverage over subject: 377-438 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1204, Superfamily II helicase [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] |
| 1g013778m | 436 | hhsearch probability: 91.71 Identity: 20% subject length: 1139 Length of aligned reigon: 60 Coverage over query: 23-82 Coverage over subject: 15-75 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g013826m | 436 | hhsearch probability: 91.71 Identity: 20% subject length: 1139 Length of aligned reigon: 60 Coverage over query: 23-82 Coverage over subject: 15-75 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g010196m | 515 | hhsearch probability: 90.23 Identity: 21% subject length: 1139 Length of aligned reigon: 58 Coverage over query: 68-125 Coverage over subject: 15-73 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] |
| 1g010111m | 518 | hhsearch probability: 90.67 Identity: 21% subject length: 1139 Length of aligned reigon: 56 Coverage over query: 68-123 Coverage over subject: 15-71 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] |
| 1g027749m | 219 | hhsearch probability: 94.66 Identity: 24% subject length: 1139 Length of aligned reigon: 58 Coverage over query: 69-126 Coverage over subject: 15-74 |
COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g020452m | 326 | hhsearch probability: 90.74 Identity: 24% subject length: 1139 Length of aligned reigon: 62 Coverage over query: 69-148 Coverage over subject: 13-74 |
COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] |
| 1g009641m | 530 | hhsearch probability: 91.65 Identity: 21% subject length: 1139 Length of aligned reigon: 58 Coverage over query: 68-125 Coverage over subject: 15-73 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] |
| 1g011884m | 475 | hhsearch probability: 90.33 Identity: 19% subject length: 1139 Length of aligned reigon: 58 Coverage over query: 23-80 Coverage over subject: 15-73 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] |
| 1g011620m | 481 | hhsearch probability: 91.36 Identity: 21% subject length: 1139 Length of aligned reigon: 57 Coverage over query: 68-124 Coverage over subject: 15-72 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] |
| 1g012395m | 464 | hhsearch probability: 92.17 Identity: 21% subject length: 1139 Length of aligned reigon: 57 Coverage over query: 68-124 Coverage over subject: 15-72 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] |
| 1g012434m | 464 | hhsearch probability: 92.17 Identity: 21% subject length: 1139 Length of aligned reigon: 57 Coverage over query: 68-124 Coverage over subject: 15-72 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] |
| 1g012427m | 464 | hhsearch probability: 92.17 Identity: 21% subject length: 1139 Length of aligned reigon: 57 Coverage over query: 68-124 Coverage over subject: 15-72 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] |
| 1g011605m | 481 | hhsearch probability: 90.62 Identity: 20% subject length: 1139 Length of aligned reigon: 60 Coverage over query: 68-127 Coverage over subject: 15-75 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] |
| 1g000698m | 1345 | hhsearch probability: 92.92 Identity: 20% subject length: 1139 Length of aligned reigon: 69 Coverage over query: 588-665 Coverage over subject: 1059-1136 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4343, CRISPR-associated protein, RecB family exonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG2887, RecB family exonuclease [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] |
| 1g002130m | 961 | hhsearch probability: 92.68 Identity: 21% subject length: 1139 Length of aligned reigon: 58 Coverage over query: 875-940 Coverage over subject: 377-438 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] |
| 1g007492m | 601 | hhsearch probability: 91.11 Identity: 29% subject length: 1139 Length of aligned reigon: 65 Coverage over query: 452-521 Coverage over subject: 11-75 |
COG1204, Superfamily II helicase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g035699m | 633 | hhsearch probability: 90.97 Identity: 16% subject length: 1139 Length of aligned reigon: 58 Coverage over query: 341-398 Coverage over subject: 12-73 |
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] |
| 1g003388m | 824 | hhsearch probability: 95.94 Identity: 22% subject length: 1139 Length of aligned reigon: 78 Coverage over query: 672-749 Coverage over subject: 741-872 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3911, Predicted ATPase [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] |
| 1g000162m | 1987 | hhsearch probability: 98.29 Identity: 31% subject length: 1139 Length of aligned reigon: 88 Coverage over query: 717-807 Coverage over subject: 742-837 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG5290, IkappaB kinase complex, IKAP component [Transcription] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3063, PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] COG3911, Predicted ATPase [General function prediction only] COG3071, HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] |
| 1g000053m | 2576 | hhsearch probability: 99.38 Identity: 19% subject length: 1139 Length of aligned reigon: 175 Coverage over query: 577-760 Coverage over subject: 377-576 |
COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG5290, IkappaB kinase complex, IKAP component [Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] |
| 1g000039m | 2856 | hhsearch probability: 99.61 Identity: 17% subject length: 1139 Length of aligned reigon: 180 Coverage over query: 599-789 Coverage over subject: 376-577 |
COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG5290, IkappaB kinase complex, IKAP component [Transcription] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] COG1201, Lhr Lhr-like helicases [General function prediction only] COG3071, HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG3063, PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] |
| 1g000038m | 2858 | hhsearch probability: 99.62 Identity: 16% subject length: 1139 Length of aligned reigon: 180 Coverage over query: 600-790 Coverage over subject: 376-577 |
COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5290, IkappaB kinase complex, IKAP component [Transcription] COG3071, HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG3063, PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] |
| 1g035724m | 1939 | hhsearch probability: 98.78 Identity: 26% subject length: 1139 Length of aligned reigon: 91 Coverage over query: 939-1030 Coverage over subject: 730-837 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5290, IkappaB kinase complex, IKAP component [Transcription] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4889, Predicted helicase [General function prediction only] COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0714, MoxR-like ATPases [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG3063, PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] |
| 1g038017m | 610 | hhsearch probability: 94.36 Identity: 21% subject length: 1139 Length of aligned reigon: 84 Coverage over query: 281-371 Coverage over subject: 377-467 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] |
| 1g004009m | 779 | hhsearch probability: 99.43 Identity: 20% subject length: 1139 Length of aligned reigon: 175 Coverage over query: 550-733 Coverage over subject: 377-578 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3911, Predicted ATPase [General function prediction only] |
| 1g004121m | 772 | hhsearch probability: 99.44 Identity: 19% subject length: 1139 Length of aligned reigon: 175 Coverage over query: 550-733 Coverage over subject: 377-578 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3911, Predicted ATPase [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] |
| 1g000509m | 1456 | hhsearch probability: 99.50 Identity: 13% subject length: 1139 Length of aligned reigon: 147 Coverage over query: 1069-1224 Coverage over subject: 377-577 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4889, Predicted helicase [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] |
| 1g006652m | 637 | hhsearch probability: 99.90 Identity: 18% subject length: 1139 Length of aligned reigon: 167 Coverage over query: 368-541 Coverage over subject: 377-573 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG3911, Predicted ATPase [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] |
| 1g000228m | 1825 | hhsearch probability: 99.69 Identity: 17% subject length: 1139 Length of aligned reigon: 178 Coverage over query: 588-773 Coverage over subject: 376-577 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] |
| 1g038763m | 690 | hhsearch probability: 99.72 Identity: 14% subject length: 1139 Length of aligned reigon: 152 Coverage over query: 415-582 Coverage over subject: 410-575 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1204, Superfamily II helicase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3911, Predicted ATPase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG1855, ATPase (PilT family) [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] |
| 1g001054m | 1171 | hhsearch probability: 99.88 Identity: 18% subject length: 1139 Length of aligned reigon: 173 Coverage over query: 550-732 Coverage over subject: 377-577 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g006386m | 647 | hhsearch probability: 99.87 Identity: 17% subject length: 1139 Length of aligned reigon: 175 Coverage over query: 368-550 Coverage over subject: 377-572 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3911, Predicted ATPase [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] |
| 1g041971m | 1044 | hhsearch probability: 99.78 Identity: 16% subject length: 1139 Length of aligned reigon: 176 Coverage over query: 363-546 Coverage over subject: 377-576 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG1204, Superfamily II helicase [General function prediction only] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3911, Predicted ATPase [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1855, ATPase (PilT family) [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g044416m | 245 | hhsearch probability: 96.29 Identity: 32% subject length: 1139 Length of aligned reigon: 50 Coverage over query: 163-214 Coverage over subject: 744-838 |
COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] |
| 1g001347m | 1095 | hhsearch probability: 99.88 Identity: 19% subject length: 1139 Length of aligned reigon: 173 Coverage over query: 550-732 Coverage over subject: 377-577 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g001718m | 1021 | hhsearch probability: 99.89 Identity: 19% subject length: 1139 Length of aligned reigon: 170 Coverage over query: 550-732 Coverage over subject: 377-577 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] |
| 1g048652m | 1382 | hhsearch probability: 99.78 Identity: 17% subject length: 1139 Length of aligned reigon: 176 Coverage over query: 582-765 Coverage over subject: 377-576 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3911, Predicted ATPase [General function prediction only] |
| 1g001501m | 1066 | hhsearch probability: 99.89 Identity: 19% subject length: 1139 Length of aligned reigon: 170 Coverage over query: 550-732 Coverage over subject: 377-577 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g002852m | 874 | hhsearch probability: 99.83 Identity: 21% subject length: 1139 Length of aligned reigon: 177 Coverage over query: 531-720 Coverage over subject: 377-574 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG3911, Predicted ATPase [General function prediction only] |
| 1g038509m | 806 | hhsearch probability: 99.89 Identity: 22% subject length: 1139 Length of aligned reigon: 179 Coverage over query: 541-732 Coverage over subject: 377-575 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4889, Predicted helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3911, Predicted ATPase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] |
| 1g002849m | 874 | hhsearch probability: 99.83 Identity: 21% subject length: 1139 Length of aligned reigon: 177 Coverage over query: 531-720 Coverage over subject: 377-574 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG3911, Predicted ATPase [General function prediction only] |
| 1g002841m | 874 | hhsearch probability: 99.83 Identity: 21% subject length: 1139 Length of aligned reigon: 177 Coverage over query: 531-720 Coverage over subject: 377-574 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG3911, Predicted ATPase [General function prediction only] |
| 1g015510m | 405 | hhsearch probability: 96.53 Identity: 20% subject length: 1139 Length of aligned reigon: 59 Coverage over query: 202-264 Coverage over subject: 1057-1121 |
COG2887, RecB family exonuclease [DNA replication, recombination, and repair] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG2251, Predicted nuclease (RecB family) [General function prediction only] |
| 1g008899m | 549 | hhsearch probability: 99.30 Identity: 19% subject length: 1139 Length of aligned reigon: 177 Coverage over query: 196-380 Coverage over subject: 377-577 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] |
| 1g001127m | 1148 | hhsearch probability: 100.00 Identity: 25% subject length: 1139 Length of aligned reigon: 440 Coverage over query: 433-923 Coverage over subject: 335-841 |
COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1330, RecC Exonuclease V gamma subunit [DNA replication, recombination, and repair] COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG3893, Inactivated superfamily I helicase [DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g047960m | 371 | hhsearch probability: 97.57 Identity: 24% subject length: 1139 Length of aligned reigon: 63 Coverage over query: 125-187 Coverage over subject: 742-842 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] |