254780142

254780142

DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6)

GeneID:8209117 Locus tag:CLIBASIA_00105
Protein GI in NCBI database:254780142 Protein Accession:YP_003064555.1
Gene range:- ( 19927 , 24123 ) Protein Length:1397aa
NCBI annotation:DNA-directed RNA polymerase subunit beta'
Pathway in KEGG:Purine metabolism [PATH:las00230]
Pyrimidine metabolism [PATH:las00240]
RNA polymerase [PATH:las03020]
Subsystem in SEED:RNA polymerase bacterial

Prediction of Local Sequence Properties

scaler
Sequence
Secondary Structure
Disordered region
Transmembrane Helices
Signal Peptide
conservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------140
MQQEVMRFFNPWTDDRGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGKYKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTLLGMSLRDVERVLYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIAMMGADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMIIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQESVDALFDNGRHKRVVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLMALELFKPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGAPVTVPSQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHALENKIVTLHSKIRGRYKSVDKDGNSISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKNISAMVDTIYRHCGQKSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMVKEYENQYNDGLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDPETGRQKKMNSIFMMSHSGARGSIHQMRQLGGMRGLIAKPSGEIIESPIRSHFKGGLCGFEFFQSCVGGRKGLLDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGLTITHIVDSGQVVYSLGSRVLGRTALDDIINPLTNECIVKAGQLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDLARGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVTVMDRSFIESPCDGIVKIKNRNVCRNSTNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISEWDPHTFPIITEVSGTVGFEDLVDGISVIESIGESTGIAKRKVIDWRFASRSQNLKPAIVVTDENGVVLKSARGTDARWFLPVDALLSVSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFEARRPKNHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVEKGDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEITDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRVAMNRDQMILKERSNFSQNEDLKNTAIQGSIA
ccHHHHHHHcccccccEEEEEEEEcccHHHHHHHcEEEEEcccccccccccccccccccHHHcccccccHHHccccccccccccccHHcccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHccccccccccHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHcccccHHHEEEEEcccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccHHccccHHHHHHHccccccHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHccccEEEEEcccccccccccEEEEEEEcccEEEEEEcccccccccccccEEEEEccccHHHHHHHHHHHcccccEEEccccccEEEcHHHHHHHHHHHHccccccccccEEcccHHHHHHHHHcccccccccEEEEEcccccccccccEEccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEHHHccccccHHHHHHHHHccccccccccccccccHHHHHHccccHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHcccEEEEEcccccccEEEEEEEccccEEEcccccccccHHHHcccccccccEEEEccccccHHHHHHHHHccccEEEEEEcEEEcccccHHHHHHHHHHHccccccccccHHEEEccccccccccEEEEEEEEccccccccccccccccccEEEEEEEEEEEcccccEEEEEcccEEEEEEccccEEEEEEEccccEEEEEcccEEEcccEEEccccccccEEEEcccEEEEEEcccccEEEEEccccccccEEEEEEEcccccccccccEEEEEcccccEEEcccccccccccccccEEEEccccccccccEEEEEccccccccccccccccHHHHHHHccccccEEEEEEccEEEEEEcccccEEEEEEEcccccEEEEEEcccccEEEEEcccEEEcccEEEcccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccEEEEEcccccccccccHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccccHHHHcccHHHHHHHHHHHccccccccccccccEEccccccccccHHHHHHHHHcccHHHHHHcccHHHHccHHHHHHccccccc
MQ************DRGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGKYKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTLLGMSLRDVERVLYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIAMMGADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMIIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQESVDALFDNGRHKRVVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLMALELFKPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGAPVTVPSQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHALENKIVTLHSKIRGRYKSVDKDGNSISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKNISAMVDTIYRHCGQKSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMVKEYENQYNDGLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRV*********KKMNSIFMMSHSGARGSIHQMRQLGGMRGLIAKPSGEIIESPIRSHFKGGLCGFEFFQSCVGGRKGLLDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGLTITHIVDSGQVVYSLGSRVLGRTALDDIINPLTNECIVKAGQLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDLARGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVTVMDRSFIESPCDGIVKIKNRNVCRNSTNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISEWDPHTFPIITEVSGTVGFEDLVDGISVIESIGESTGIAKRKVIDWRFASRSQNLKPAIVVTDENGVVLKSARGTDARWFLPVDALLSVSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFEARRPKNHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVEKGDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEITDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRVA******************************
mqqevmrffnpwtddrgfdsvrisiaspakiaslsygeikkpetinyrtfkperdglfcarifgpikdyecicgkykrmkykgiicekcgvevtlssvrrdrmahidlaspvahpwflkslpsristllgmslrdvervlyfesyvvvdpglsslekyqilteeeyveavsqfgqdqfiammgadaiyellialdlqnlaltlrdqlsksssifrrkkiikrlkivdsfitsgnnpgwmiirklpvlppdlrplvaldfgrfaasdlndlyrrvigrnnrlmrlkslhapeiiirnekrmlqesvdalfdngrhkrvvtganrrplkslsdmlkgkqgrfrtnllgkrvdysgrsvivagpelqlhqcglpklmalelfkpflyaqlekkgyvstvkqakkfvekerpevwdvlaevvhqhvvllnrapslhrlsmqafepkiisgkaiqlhplvcagynadfdgdqmavyavispeaqlearvlmlstnnllhpasgapvtvpsqdmvlglcylstvhegdpgegmlfadmgevyhalenkivtlhskirgryksvdkdgnsiskiydttpgrmiigeilprhheisfdicnqemikknisamvdtiyrhcgqkstvafcddlmrlgfryacssgisfgkddiivpeskekiiaeadkmvkeyenqyndglitrgekynkvvdlwgkttdkvteemmarikrvefdpetgrqkkmnsifmmshsgargsihqmrqlggmrgliakpsgeiiespirshfkgglcgfeffqscvggrkglldvvmrtassgylsrrlvdvaqncvvnqvdcntkkgltithivdsgqvvyslgsrvlgrtalddiinpltnecivkagqlileshvneiekcgirsvrirsaltcessrgvcvlcygrdlargslvnvgeavgviaaqsigepgtqltmrtfhlggavtvmdrsfiespcdgivkiknrnvcrnstndlismgrnttlqildmsgqeqyshrimygaklfvddggviecgqrisewdphtfpiitevsgtvgfedlvdgisviesigestgiakrkvidwrfasrsqnlkpaivvtdengvvlksargtdarwflpvdallsvspgqkvstgdvlarlpissaktkditsglprvaelfearrpknhailaeisgtirikrnyknksrvviepfedgvepaeyfipknkhfylqdgdhvekgdyildgnpvpqdilrikgvealasylinevqevyrlegvainhkhievvvrhmlqkveitdpadteyilgdnvdrieveelnrslaqqgkklvsfspilqgitkaslqtksfisaasfqettkvlteaaiagkvdtldgfkenvivgrsipagtgailhekrrvamnrdqmilkersnfsqnedlkntaiqgsia
mqqevmrffnpwtddrgfdsvrisiaspakiaslsygeikkpetinyrtfkperdglfcarifgpikdyecicgkykrmkykgiicekcgvevtlssvrrdrmahidlaspvahpwflkslpsristllgmslrdvervlyfesyvvvdpglsslekyqilteeeyveavsqfgqdqfiammgadaiyellialdlqnlaltlrdqlsksssifrrkkiikrlkivdsfitsgnnpgwmiirklpvlppdlrplvaldfgrfaasdlndlyrrvigrnnrlmrlkslhapeiiirnekrmlqesvdalfdngrhkrvvtganrrplkslsdmlkgkqgrfrtnllgkrvdysgrsvivagpelqlhqcglpklmalelfkpflyaqlekkgyvstvkqakkfvekerpevwdvlaevvhqhvvllnrapslhrlsmqafepkiisgkaiqlhplvcagynadfdgdqmavyavispeaqlearvlmlstnnllhpasgapvtvpsqdmvlglcylstvhegdpgegmlfadmgevyhalenkivtlhskirgryksvdkdgnsiskiydttpgrmiigeilprhheisfdicnqemikknisamvdtiyrhcgqkstvafcddlmrlgfryacssgisfgkddiivpeskekiiaeadkmvkeyenqyndglitrgekynkvvdlwgkttdkvteemmarikrvefdpetgrqkkmnsifmmshsgargsihqmrqlggmrgliakpsgeiiespirshfkgglcgfeffqscvggrkglldvvmrtassgylsrrlvdvaqncvvnqvdcntkkgltithivdsgqvvyslgsrvlgrtalddiinpltnecivkagqlileshvneiekcgirsvrirsaltcessrgvcvlcygrdlargslvnvgeavgviaaqsigepgtqltmrtfhlggavtvmdrsfiespcdgivkiknrnvcrnstndlismgrnttlqildmsgqeqyshrimygaklfvddggviecgqrisewdphtfpiitevsgtvgfedlvdgisviesigestgiakrkvidwrfasrsqnlkpaivvtdengvvlksargtdarwflpvdallsvspgqkvstgdvlarlpissaktkditsglprvaelfearrpknhailaeisgtirikrnyknksrvviepfedgvepaeyfipknkhfylqdgdhvekgdyildgnpvpqdilrikgvealasylinevqevyrlegvainhkhievvvrhmlqkveitdpadteyilgdnvdrieveelnrslaqqgkklvsfspilqgitkaslqtksfisaasfqettkvlteaaiagkvdtldgfkenvivgrsipagtgailhekrrvamnrdqmilkersnfsqnedlkntaiqgsia
MQQEVMRFFNPWTDDRGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGKYKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTLLGMSLRDVERVLYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIAMMGADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMIIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQESVDALFDNGRHKRVVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLMALELFKPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGAPVTVPSQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHALENKIVTLHSKIRGRYKSVDKDGNSISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKNISAMVDTIYRHCGQKSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMVKEYENQYNDGLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDPETGRQKKMNSIFMMSHSGARGSIHQMRQLGGMRGLIAKPSGEIIESPIRSHFKGGLCGFEFFQSCVGGRKGLLDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGLTITHIVDSGQVVYSLGSRVLGRTALDDIINPLTNECIVKAGQLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDLARGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVTVMDRSFIESPCDGIVKIKNRNVCRNSTNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISEWDPHTFPIITEVSGTVGFEDLVDGISVIESIGESTGIAKRKVIDWRFASRSQNLKPAIVVTDENGVVLKSARGTDARWFLPVDALLSVSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFEARRPKNHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVEKGDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEITDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRVAMNRDQMILKERSNFSQNEDLKNTAIQGSIA

Domain archietecture




Structure model(s) of the protein

model for region: 3-1370

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