254780947

254780947

transcription-repair coupling factor

GeneID:8209969 Locus tag:CLIBASIA_04230
Protein GI in NCBI database:254780947 Protein Accession:YP_003065360.1
Gene range:+ ( 938109 , 941672 ) Protein Length:1186aa
NCBI annotation:transcription-repair coupling factor
Pathway in KEGG:Nucleotide excision repair [PATH:las03420]
Subsystem in SEED:Cell division-ribosomal stress proteins cluster;
DNA-replication;
Transcription factors bacterial
sequencesequence profileraw resultsgenome browserNCBI geneNCBI protein

Prediction of Local Sequence Properties

scaler
Sequence
Secondary Structure
Disordered region
Transmembrane Helices
Signal Peptide
conservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------
MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPTKKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANFGTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLVESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPIEVIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIRPDQNLVFDCLLPTINQRFFEAKRIITHLINMTNPEIQTPDSGDLSLKVKS
cccHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHcccccEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEEcHHHHHcccccHHHHHHcEEEEEccccccHHHHHHHHHHcccEEccccccccEEEEEccEEEEEcccccccEEEEccccEEEEEEEEEcccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHcccccHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccHHHHHHHHccccEEEEEccccccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHcccccccccccHHHHHHcccccEEEEEccHHHccccccEEEEEHHHHHcHHHHHHHHHHHHHHHHHcccHHHcccccEEEEEccccEEEEEEEEEEccccccEEEEEEEcccccccccHHHHHcccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHccccccEEEEcHHHHHHHHHcccccEEEEEcHHHccHHHHHHHHHccccccEEEccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHcccccEEEEccHHHcccccccccEEEEEcccccccHHHHHHHcccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccHHHcccHHHHcHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccEEEEccccEEEEEEcccccccHHHHHHHHHHcccEEEEccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEc
*********ISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPTKKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANFGTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLVESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPIEVIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIRPDQNLVFDCLLPTINQRFFEAKRIITHLINMT************SLKVKS
mifgsdierisekyckkitlspvidgtegfilaeiarlglslvyicsderilinlkkiltlvvpdirviifpawdclpydrvspspyvvtrrlscisnlvsfnssketiivlttvsavmcrsvnimsikdyklsiqskdqidmakviekletngfqrvnavykvgeyavrggildvyeptkkypvrldffgntidslrlfdsstqrtireisifeintlsevmltsqnisrfrenylanfgtttqedplyvaisqgrrypgmehwlpffyqsmetifpylsefciitdplvketarkrsqliqdyyearlqyssdkkqysvykpiapeklylnyqqfdaliqtthklvqmtafnqqetahnrvvhlnafpgkswvpsavqkiesqdnwesggrfdkflshvaqqaqkgiktiisassqgalqhlihlieshgfkkikkintlteinsllkeeiaavilpinqgfetkhmilvtetdllgkkiarrvvrkknvhaqsffdssnieegaiivhaehgigrfvrlysievsgtfhdclelhyadnaklfvpvenidlisrysteittvtldklggsawktrkanlkkrledlaqklvdiaakraihsvpplmvsqdlysqfikrfphvetedqekaidaviqdlssgrlmdrlicgdvgfgkteialraafiavmnglqvaviapttllvrqhfrlfserfqgfsvriasisrfvqtkeaalhkksitegqvdivigthallnpkitfanlgliiideeqhfgvkhkealkethtgvhvltlsatpiprtlqlaitgvrelslismppinriacrtsisifdplvvretlmreyyrggqsfyvcprlsdlekcytflqsevpelkiamahgqmspknledkmnafyegqydvllstsivesgldlpkantmivqradmfglaqlyqlrgrvgrskiasfalfllpenrpltaaaqkrlrilqslntlgagfqlasydldirgtgnllgeeqsghireigfelyqkmleetvasikgqkdlvesdwspqvlieasvmipesyvsdinlrlslyrrlgnitdhadishfkeemvdrfgplpievihllkvvflkllcrianidkmdiglkgiiiqfrhktfsnpeallqyiaqqkgkiiirpdqnlvfdcllptinqrffeakriithlinmtnpeiqtpdsgdlslkvks
mifgsdierisekyckkitlspvidgtegfilaeiarlglslvyicsderilinlkkiltlvvpdirviifpawdclpydrvspspyvvtrrlscisnlvsfnssketiivlttvsavmcrsvnimsikdyklsiqskdqidmakviekletngfqrvnavykvgeyavrggildvyeptkkypvrldffgntidslrlfdsstqrtireisifeintlsevmltsqnisrfrenylanfgtttqedplyvaisqgrrypgmehwlpffyqsmetifpylsefciitdplvketarkrsqliqdyyearlqyssdkkqysvykpiapeklylnyqqfdaliqtthklvqmtafnqqetahnrvvhlnafpgkswvpsavqkiesqdnwesggrfdkflshvaqqaqkgiktiisassqgalqhlihlieshgfkkikkintlteinsllkeeiaavilpinqgfetkhmilvtetdllgkkiarrvvrkknvhaqsffdssnieegaiivhaehgigrfvrlysievsgtfhdclelhyadnaklfvpvenidlisrysteittvtldklggsawktrkanlkkrledlaqklvdiaakraihsvpplmvsqdlysqfikrfphvetedqekaidaviqdlssgrlmdrlicgdvgfgkteialraafiavmnglqvaviapttllvrqhfrlfserfqgfsvriasisrfvqtkeaalhkksitegqvdivigthallnpkitfanlgliiideeqhfgvkhkealkethtgvhvltlsatpiprtlqlaitgvrelslismppinriacrtsisifdplvvretlmreyyrggqsfyvcprlsdlekcytflqsevpelkiamahgqmspknledkmnafyegqydvllstsivesgldlpkantmivqradmfglaqlyqlrgrvgrskiasfalfllpenrpltaaaqkrlrilqslntlgagfqlasydldirgtgnllgeeqsghireigfelyqkmleetvasikgqkdlvesdwspqvlieasvmipesyvsdinlrlslyrrlgnitdhadishfkeemvdrfgplpievihllkvvflkllcrianidkmdiglkgiiiqfrhktfsnpeallqyiaqqkgkiiirpdqnlvfdcllptinqrffeakriithlinmtnpeiqtpdsgdlslkvks
MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPTKKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANFGTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLVESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPIEVIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIRPDQNLVFDCLLPTINQRFFEAKRIITHLINMTNPEIQTPDSGDLSLKVKS

Domain archietecture



Structure model(s) of the protein

model for region: 10-371,388-1168
HTML Comment Box is loading comments...