254780901

254780901

single-stranded-DNA-specific exonuclease (EC 3.1.-.-)

GeneID:8209921 Locus tag:CLIBASIA_04000
Protein GI in NCBI database:254780901 Protein Accession:YP_003065314.1
Gene range:+ ( 878507 , 880309 ) Protein Length:599aa
NCBI annotation:single-stranded-DNA-specific exonuclease protein
Pathway in KEGG:Base excision repair [PATH:las03410]
Mismatch repair [PATH:las03430]
Homologous recombination [PATH:las03440]
Subsystem in SEED:DNA Repair Base Excision;
DNA-replication;
DNA repair, bacterial RecFOR pathway
sequencesequence profileraw resultsgenome browserNCBI geneNCBI protein

Prediction of Local Sequence Properties

scaler
Sequence
Secondary Structure
Disordered region
Transmembrane Helices
Signal Peptide
conservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------60
MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAK
ccccccccHHHHHcccccccccccccHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHcHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHccccEEEccccHHccccccHHHHHHHHHccccEEEEEccccccHHHHHHHHHcccEEEEEcccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHEEEccccHHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHccccHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEccccEEEEEEEccccccHHHHHHHHcccccEEccccccHHccccccHHHHHHHHHHHHHHHHHHccHHHccccEEEcccccHHHccHHHHHHHHHcccccccccccEEEccccEEEEEEEEcccEEEEEEEcccccEEEEEEEcccccccHHHHHcccccEEEEEEEEEEEEEccccEEEEEEEEccccHHHHHcc
***QAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP*******************E*AQLIITVDC**************GIDVIVIDHHQ*K*******ALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFA*
mndqaflgvecsisgfrwvsllgqeginralaitqkhaipdivarvlvnrnvsidyakdflnpsirllmpdpliltdcdkaarrivqaiynsekimifgdydvdgaasvalmmrflshcsvnanmyipdrivdgygpnpslmekfinegaqliitvdcgstsydalqyatnqgidvividhhqvkseeipayalvnpnrlddlsgqghlcaagvvflvlvliyrilrqdnkvplnfdllslldlvalatvcdvvpliglnrayvvkglmvarrqgnpglkaliervnisspitaenlgymigpsinaggrigesnlgsrllisddsqelemlamkldvlnqnrrlmesamleqaeakvltqcddiqqasvivvegdrwhpgivgllaarlkekfgrpsfaisfeedgkgigsgrsiegfdigkmvsfaveegilvkggghamaagltvervnfgrlcdffqkfahnivpalittpvfkidgvlnasavnialidmlesagpygagnpnpvfafpnhklqsirvvnlahlqmtfesqdsetlqaiafrvygtplgeflmqsrgkrmhvtghlcvnywrgskrcqlrvldaspveghhfak
mndqaflgvecsisgfrwvsllgqeginralaitqkhaipdivarvlvnrnvsidyakdflnpsirllmpdpliltdcdkaarrivqaiynsekimifgdydvdgaasvalmmrflshcsvnanmyipdrivdgygpnpslmekfinegaqliitvdcgstsydalqyatnqgidvividhhqvkseeipayalvnpnrlddlsgqghlcaagvvflvlvliyrilrqdnkvplnfdllslldlvalatvcdvvpliglnrayvvkglmvarrqgnpglkaliervnisspitaenlgymigpsinaggrigesnlgsrllisddsqelemlamkldvlnqnrrlmesamleqaeakvltqcddiqqasvivvegdrwhpgivgllaarlkekfgrpsfaisfeedgkgigsgrsiegfdigkmvsfaveegilvkggghamaagltvervnfgrlcdffqkfahnivpalittpvfkidgvlnasavnialidmlesagpygagnpnpvfafpnhklqsirvvnlahlqmtfesqdsetlqaiafrvygtplgeflmqsrgkrmhvtghlcvnywrgskrcqlrvldaspveghhfak
MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAK

Domain archietecture



Structure model(s) of the protein

model for region: 14-597
HTML Comment Box is loading comments...