254780306

254780306

DNA topoisomerase I (EC 5.99.1.2)

GeneID:8209288 Locus tag:CLIBASIA_00955
Protein GI in NCBI database:254780306 Protein Accession:YP_003064719.1
Gene range:+ ( 194907 , 197420 ) Protein Length:836aa
NCBI annotation:DNA topoisomerase I
Subsystem in SEED:Conserved gene cluster associated with Met-tRNA formyltransferase

Prediction of Local Sequence Properties

scaler
Sequence
Secondary Structure
Disordered region
Transmembrane Helices
Signal Peptide
conservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830------
MNVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLPGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNEDSRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLTSNPQDIPEMKESVLLGNDLETKESVTLRSGRFGLYVQRGDGKDAKRCSLPKTWKSDSVDYDKAMSLLSLPREIGIHPETQKNIIAGTGKYGYYLNHDGAYTKLESIEQVLTIDLEQAISCITEKKKIEKSSRKNSKNQGHVIGTHPEGGSITVHNGRYGPYLHWKKINASLSKEESPDTVDLEKALKILNIKKQKK
cEEEEEccHHHHHHHHHHcccccEEEEEEccEEcccccccccccccccccEEEEccccHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHcccccccccEEEEEEEccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccccccHHHHHHHHHHHHHHccccccEEEEEEEEEcccccEEEEEEEccccccccccccccHHHHHHHHHHHccccEEEEEEEcccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccEEEccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEccccccEEEEEEEEEEEEccHHHHHcccccccccccccccccccccccEEEEcccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEccEEEEcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEccccccEEEcccccccccccccccccccccccccccccccccccccEEEEEccccccEEcccccccccccccccccccccccHHHHHHHHHcHHHccccccccccEEEcccccccEEEEccEEcccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEEcccccccEEcccEEEEccccccHHHccHHHHHHHHHHHHHcc
MNVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLPGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNEDSRTCP********LK*********************QLTSNPQDIPEMKESVLLGNDLETKESVTLRSGRFGLYVQRGDGKDAKRCSLPKTWKSDSVDYDKAMSLLSLPREIGIHPETQKNIIAGTGKYGYYLNHDGAYTKLESIEQVLTIDLEQAISCIT*******************IGTHPEGGSITVHNGRYGPYLHWKKINASLSKEESPDTVDLEKALKILNIKK***
mnviivespakaktiskylgsnykvlssfghirdlpakkgsvlpekefemiwnidpssqkhlqniihavksstililatdpdregeaiswhvldvlrqknliektkiqrvsfnaitkqvvlnamksprdinldlvnaylarraldylvgfnlspilwqklpgarsagrvqsvalrlicnrenqiesfvseeywslsvlletprndkftahltdfngqriekksisnkkeaddlisfvkkatysvekienkpikrnpwpafttstlqqvassrlgfsashtmriaqklyegidvngeivglitymrtdgvhmspdaleavrrsitshygdhylpekpriyssksknaqeaheairpndfdflpskmkqfldsdqfqlynliwkrsvasqmasakferttvniiatyndqighlrttgsllcfdgflkvwenqydqeknseedillpyisaneqliatetnasqhfteppprysesslikkmeeigigrpstyatiletlykrkyviaekrkilpqntgrivtaflenffsqyveydftadleekldeistgklnwkevlhefweefiekidsikklrisnvldilndtlssvifppkennedsrtcpechthslslklsskygafvgctnypeckytrqltsnpqdipemkesvllgndletkesvtlrsgrfglyvqrgdgkdakrcslpktwksdsvdydkamsllslpreigihpetqkniiagtgkygyylnhdgaytklesieqvltidleqaiscitekkkiekssrknsknqghvigthpeggsitvhngrygpylhwkkinaslskeespdtvdlekalkilnikkqkk
mnviivespakaktiskylgsnykvlssfghirdlpakkgsvlpekefemiwnidpssqkhlqniihavksstililatdpdregeaiswhvldvlrqknliektkiqrvsfnaitkqvvlnamksprdinldlvnaylarraldylvgfnlspilwqklpgarsagrvqsvalrlicnrenqiesfvseeywslsvlletprndkftahltdfngqriekksisnkkeaddlisfvkkatysvekienkpikrnpwpafttstlqqvassrlgfsashtmriaqklyegidvngeivglitymrtdgvhmspdaleavrrsitshygdhylpekpriyssksknaqeaheairpndfdflpskmkqfldsdqfqlynliwkrsvasqmasakferttvniiatyndqighlrttgsllcfdgflkvwenqydqeknseedillpyisaneqliatetnasqhfteppprysesslikkmeeigigrpstyatiletlykrkyviaekrkilpqntgrivtaflenffsqyveydftadleekldeistgklnwkevlhefweefiekidsikklrisnvldilndtlssvifppkennedsrtcpechthslslklsskygafvgctnypeckytrqltsnpqdipemkesvllgndletkesvtlrsgrfglyvqrgdgkdakrcslpktwksdsvdydkamsllslpreigihpetqkniiagtgkygyylnhdgaytklesieqvltidleqaiscitekkkiekssrknsknqghvigthpeggsitvhngrygpylhwkkinaslskeespdtvdlekalkilnikkqkk
MNVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLPGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNEDSRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLTSNPQDIPEMKESVLLGNDLETKESVTLRSGRFGLYVQRGDGKDAKRCSLPKTWKSDSVDYDKAMSLLSLPREIGIHPETQKNIIAGTGKYGYYLNHDGAYTKLESIEQVLTIDLEQAISCITEKKKIEKSSRKNSKNQGHVIGTHPEGGSITVHNGRYGPYLHWKKINASLSKEESPDTVDLEKALKILNIKKQKK

Domain archietecture




Structure model(s) of the protein

model for region: 1-580,601-637
model for region: 718-745

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