254780289

254780289

RNA polymerase sigma factor RpoD

GeneID:8209271 Locus tag:CLIBASIA_00870
Protein GI in NCBI database:254780289 Protein Accession:YP_003064702.1
Gene range:- ( 177937 , 179985 ) Protein Length:681aa
NCBI annotation:RNA polymerase sigma factor RpoD
Pathway in KEGG:RNA polymerase [PATH:las03020]
Subsystem in SEED:Transcription initiation, bacterial sigma factors
sequencesequence profileraw resultsgenome browserNCBI geneNCBI protein

Prediction of Local Sequence Properties

scaler
Sequence
Secondary Structure
Disordered region
Transmembrane Helices
Signal Peptide
conservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-
MTIGKKRNRDSDSEHEDSDDSLVFDFSDDSWKKMIKLARQRGYVTIEELNAFLPPDEVSSEQMEDTVAMLSNMGINVVDGDDLEDEEGSEDSLDLASSASNSSVFLQKRKDSADRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLTFQALIIWRDELNDGTTLLREIIDLEACIGPESKGGFFHGTEGHSYQKREDSSQEKERDDVQETEGDIESAAKVSKDDRSKVDSPPENAENDERNLDEDEDDSAHTLSAMEDQLRPKVMCALDEIAEVYRELRSLQDNAVNGQKDEKSSVKCKVLKEKLVKLVGSLSLNQSRIDLLVEQLYDISKRIMHNEGELLRLAQSYGIKRDVFLERHQGRELDPHWVSYAKDFPEGEWKNFVACEVDSILKIRNEIKSISVETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD
cccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHcccccccHHHHHHHHHHHHHcccEEcccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccHHHHccccccHHHHHccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
********************************************************************************************L**********************************M********EGEIAIAKRIEAGRAMMMASLCESPLTFQALIIWRDELNDGTTLLREIIDLEACIGPES********************************************************************************LRPKVMCALDEIAEVYRELRSLQDNAVNGQKDEKSSVKCKVLKEKLVKLVGSLSLNQSRIDLLVEQLYDISKRIMHNEGELLRLAQSYGIKRDVFLERHQGRELDPHWVSYAKDFPEGEWKNFVACEVDSILKIRNEIKSISVETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFL*
mtigkkrnrdsdsehedsddslvfdfsddswkkmiklarqrgyvtieelnaflppdevsseqmedtvamlsnmginvvdgddledeegsedsldlassasnssvflqkrkdsadrstddpvrmylremgsiellsregeiaiakrieagrammmaslcespltfqaliiwrdelndgttllreiidleacigpeskggffhgteghsyqkredssqekerddvqetegdiesaakvskddrskvdsppenaendernldededdsahtlsamedqlrpkvmcaldeiaevyrelrslqdnavngqkdekssvkckvlkeklvklvgslslnqsridllveqlydiskrimhnegellrlaqsygikrdvflerhqgreldphwvsyakdfpegewknfvacevdsilkirneiksisvetgisisefrhivsmvrkgeceasiakkemveanlrlvisvakkytnrglqfldliqegniglmkaaekfdwclgykfstyamwwvkqaitrsiadqsctiripvhmrdkihkvvrtarrmsnkikreptpeeiakklampvegvrkvlkitkepisletpigdedtshlgdfiedknavspldsaiqanlretttrvlasltpreervlrmrfgigmntdhtleevgkqfcvtrerirqieakairklkhpsrskklrsfld
mtigkkrnrdsdsehedsddslvfdfsddswkkmiklarqrgyvtieelnaflppdevsseqmedtvamlsnmginvvdgddledeegsedsldlassasnssvflqkrkdsadrstddpvrmylremgsiellsregeiaiakrieagrammmaslcespltfqaliiwrdelndgttllreiidleacigpeskggffhgteghsyqkredssqekerddvqetegdiesaakvskddrskvdsppenaendernldededdsahtlsamedqlrpkvmcaldeiaevyrelrslqdnavngqkdekssvkckvlkeklvklvgslslnqsridllveqlydiskrimhnegellrlaqsygikrdvflerhqgreldphwvsyakdfpegewknfvacevdsilkirneiksisvetgisisefrhivsmvrkgeceasiakkemveanlrlvisvakkytnrglqfldliqegniglmkaaekfdwclgykfstyamwwvkqaitrsiadqsctiripvhmrdkihkvvrtarrmsnkikreptpeeiakklampvegvrkvlkitkepisletpigdedtshlgdfiedknavspldsaiqanlretttrvlasltpreervlrmrfgigmntdhtleevgkqfcvtrerirqieakairklkhpsrskklrsfld
MTIGKKRNRDSDSEHEDSDDSLVFDFSDDSWKKMIKLARQRGYVTIEELNAFLPPDEVSSEQMEDTVAMLSNMGINVVDGDDLEDEEGSEDSLDLASSASNSSVFLQKRKDSADRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLTFQALIIWRDELNDGTTLLREIIDLEACIGPESKGGFFHGTEGHSYQKREDSSQEKERDDVQETEGDIESAAKVSKDDRSKVDSPPENAENDERNLDEDEDDSAHTLSAMEDQLRPKVMCALDEIAEVYRELRSLQDNAVNGQKDEKSSVKCKVLKEKLVKLVGSLSLNQSRIDLLVEQLYDISKRIMHNEGELLRLAQSYGIKRDVFLERHQGRELDPHWVSYAKDFPEGEWKNFVACEVDSILKIRNEIKSISVETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD

Domain archietecture



Structure model(s) of the protein

model for region: 26-208,222-229,258-682
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