T0444

Targets
387 388 389 390
391 392 393 394
395 396 397 398
399 400 401 402
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407 408 409 410
411 412 413 414
415 416 417 418
419 420 421 422
423 424 425 426
427 428 429 430
431 432 433 434
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439 440 441 442
443 444 445 446
447 448 449 450
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479 480 481 482
483 484 485 486
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495 496 497 498
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503 504 505 506
507 508 509 510
511 512 513 514

T0444

ribonucleotide reductase subunit M2B from Homo sapiens

Target type: Server only

Target sequence:

>T0444 MM30C, Homo sapiens, 326 residues
MHHHHHHSSGVDLGTENLYFQSMSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTN

Structure:
Method: X-ray, res=2.8Å, R/Rfree=0.21/0.26
Determined by: SGC
PDB ID: 2vux

2vux_A cartoon
Cartoon diagram of 444: 2vux chain A

PyMOL of 2vux

Domains:  PyMOL of domains

Single domain protein.

Structure classification:

Ferritin fold.

CASP category:

Comparative modeling:easy.

Closest templates:

1jk0.

Target sequence - PDB file inconsistencies:

T0444    2vux.pdb    T0444.pdb    PyMOL    PyMOL of domains    

T0444    1 MHHHHHHSSGVDLGTENLYFQSMSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTN 326
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~||||||||~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~
2vuxA   30 ---------------------------------NEEPLLRK-----VIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAAS------NLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFM---------- 312

Single domain protein: target 34-41, 47-103, 110-316 ; pdb 30-37, 43-99, 106-312

Sequence classification:

Ribonucleotide reductase, small chain (Ribonuc_red_sm) in Pfam.

Server predictions:

T0444:pdb 30-312:seq 34-316:CM_easy;   alignment

distribution of first scores
First models for T0444: Gaussian kernel density estimation for GDT-TS scores of the first server models, plotted at various bandwidths (=standard deviations). The GDT-TS scores are shown as a spectrum along the horizontal axis: each bar represents first server model. The bars are colored green, gray and black for top 10, bottom 25% and the rest of servers. The family of curves with varying bandwidth is shown. Bandwidth varies from 0.3 to 8.2 GDT-TS % units with a step of 0.1, which corresponds to the color ramp from magenta through blue to cyan. Thicker curves: red, yellow-framed brown and black, correspond to bandwidths 1, 2 and 4 respectively.

click on a score in the table below to display the model in PyMOL

# GROUP ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ ↓ GROUP #
T0444 T0444 T0444 T0444
First score First Z-score Best score Best Z-score
1 MUFOLD−Server 94.67 93.93 89.44 2.35 2.65 1.01 94.67 93.93 89.44 1.29 1.25 1.08 MUFOLD−Server 1
2 Poing 93.84 93.11 88.63 2.04 2.43 0.76 93.84 93.11 88.63 1.01 1.08 0.48 Poing 2
3 Phyre2 93.84 93.11 88.63 2.04 2.43 0.76 93.84 93.11 88.63 1.01 1.08 0.48 Phyre2 3
4 Phragment 93.84 93.11 88.63 2.04 2.43 0.76 93.84 93.11 88.63 1.01 1.08 0.48 Phragment 4
5 HHpred5 93.84 92.62 89.68 2.04 2.30 1.09 93.84 92.62 89.68 1.01 0.98 1.26 HHpred5 5
6 rehtnap 91.82 90.96 85.77 1.29 1.86 -0.13 93.20 92.83 86.88 0.79 1.02 -0.83 rehtnap 6
7 FFASstandard 91.08 86.00 84.08 1.02 0.54 -0.66 94.48 93.63 89.85 1.23 1.19 1.39 FFASstandard 7
8 FFASflextemplate 90.99 88.60 84.83 0.99 1.23 -0.42 90.99 88.60 84.83 0.03 0.14 -2.36 FFASflextemplate 8
9 FFASsuboptimal 90.99 88.60 84.83 0.99 1.23 -0.42 90.99 88.60 84.83 0.03 0.14 -2.36 FFASsuboptimal 9
10 Phyre_de_novo 90.53 86.37 88.91 0.82 0.64 0.85 93.66 92.92 88.91 0.95 1.04 0.69 Phyre_de_novo 10
11 panther_server 90.26 87.44 81.16 0.72 0.92 -1.57 94.39 94.03 86.41 1.19 1.27 -1.18 panther_server 11
12 Zhang−Server 89.98 87.59 88.76 0.61 0.96 0.80 89.98 87.59 88.76 -0.31 -0.08 0.58 Zhang−Server 12
13 MUSTER 89.61 84.65 88.37 0.48 0.18 0.68 90.72 87.10 88.37 -0.06 -0.18 0.29 MUSTER 13
14 GeneSilicoMetaServer 89.43 85.69 87.85 0.41 0.46 0.52 94.58 94.09 90.06 1.26 1.29 1.55 GeneSilicoMetaServer 14
15 Fiser−M4T 88.97 85.72 88.47 0.24 0.46 0.71 88.97 85.72 88.47 -0.66 -0.47 0.36 Fiser−M4T 15
16 3Dpro 88.97 84.93 87.22 0.24 0.25 0.32 89.61 84.93 87.48 -0.44 -0.63 -0.38 3Dpro 16
17 OLGAFS 88.88 84.71 86.05 0.21 0.19 -0.04 89.34 85.42 87.69 -0.53 -0.53 -0.22 OLGAFS 17
18 Pushchino 88.79 84.93 87.69 0.17 0.25 0.47 88.79 84.93 87.69 -0.72 -0.63 -0.22 Pushchino 18
19 pipe_int 88.79 84.93 87.69 0.17 0.25 0.47 94.39 91.02 88.12 1.19 0.64 0.10 pipe_int 19
20 3D−JIGSAW_AEP 88.79 84.56 87.29 0.17 0.16 0.34 89.06 84.56 87.29 -0.62 -0.71 -0.52 3D−JIGSAW_AEP 20
21 RAPTOR 88.79 84.01 88.03 0.17 0.01 0.57 93.20 92.16 88.19 0.79 0.88 0.15 RAPTOR 21
22 LEE−SERVER 88.60 84.74 87.79 0.10 0.20 0.50 88.60 85.08 87.95 -0.78 -0.60 -0.03 LEE−SERVER 22
23 FAMSD 88.60 84.19 86.32 0.10 0.06 0.04 88.69 84.71 86.87 -0.75 -0.68 -0.84 FAMSD 23
24 MUProt 88.60 82.66 88.29 0.10 -0.35 0.65 88.60 83.76 88.29 -0.78 -0.88 0.23 MUProt 24
25 MULTICOM−REFINE 88.51 83.67 88.30 0.07 -0.08 0.66 88.60 83.95 88.30 -0.78 -0.84 0.23 MULTICOM−REFINE 25
26 Pcons_local 88.42 83.15 87.84 0.04 -0.22 0.51 95.13 94.64 89.77 1.45 1.40 1.33 Pcons_local 26
27 Pcons_dot_net 88.42 83.15 87.84 0.04 -0.22 0.51 88.60 83.33 87.84 -0.78 -0.97 -0.11 Pcons_dot_net 27
28 Pcons_multi 88.42 83.15 87.84 0.04 -0.22 0.51 89.80 85.39 88.65 -0.37 -0.54 0.49 Pcons_multi 28
29 circle 88.42 82.66 85.53 0.04 -0.35 -0.20 88.88 84.90 87.05 -0.69 -0.64 -0.70 circle 29
30 MULTICOM−CMFR 88.42 82.05 87.83 0.04 -0.51 0.51 95.68 95.37 92.18 1.63 1.55 3.13 MULTICOM−CMFR 30
31 SAM−T08−server 88.33 83.92 86.39 0.00 -0.02 0.06 88.33 83.92 86.39 -0.87 -0.85 -1.19 SAM−T08−server 31
32 HHpred4 88.33 82.35 87.69 0.00 -0.43 0.47 88.33 82.35 87.69 -0.87 -1.17 -0.22 HHpred4 32
33 HHpred2 88.33 82.35 87.69 0.00 -0.43 0.47 88.33 82.35 87.69 -0.87 -1.17 -0.22 HHpred2 33
34 PSI 88.23 83.58 87.84 -0.03 -0.11 0.51 94.94 94.52 89.99 1.38 1.38 1.50 PSI 34
35 pro−sp3−TASSER 88.14 84.16 87.39 -0.07 0.05 0.37 88.60 84.99 87.73 -0.78 -0.62 -0.19 pro−sp3−TASSER 35
36 nFOLD3 88.14 82.97 87.39 -0.07 -0.27 0.37 88.79 84.93 87.69 -0.72 -0.63 -0.22 nFOLD3 36
37 fais−server 88.14 81.59 87.71 -0.07 -0.63 0.47 94.58 93.84 89.74 1.26 1.23 1.31 fais−server 37
38 PS2−server 88.05 83.58 86.85 -0.10 -0.11 0.21 95.96 95.47 90.16 1.73 1.58 1.62 PS2−server 38
39 Frankenstein 88.05 83.33 86.70 -0.10 -0.17 0.16 94.03 93.54 88.91 1.07 1.17 0.69 Frankenstein 39
40 MULTICOM−CLUSTER 87.96 82.81 88.14 -0.13 -0.31 0.61 88.23 82.97 88.31 -0.91 -1.04 0.24 MULTICOM−CLUSTER 40
41 COMA−M 87.87 83.76 86.73 -0.17 -0.06 0.17 87.87 83.76 86.85 -1.03 -0.88 -0.85 COMA−M 41
42 GS−KudlatyPred 87.87 82.84 86.20 -0.17 -0.30 0.00 87.87 82.84 86.20 -1.03 -1.07 -1.34 GS−KudlatyPred 42
43 forecast 87.87 82.54 86.78 -0.17 -0.38 0.18 94.30 93.47 88.79 1.16 1.16 0.60 forecast 43
44 huber−torda−server 87.87 81.92 86.00 -0.17 -0.55 -0.06 94.48 93.75 89.41 1.23 1.22 1.06 huber−torda−server 44
45 BioSerf 87.78 83.49 86.33 -0.20 -0.13 0.04 87.78 83.49 86.33 -1.06 -0.94 -1.24 BioSerf 45
46 FEIG 87.59 82.94 86.75 -0.27 -0.28 0.18 87.78 83.49 87.20 -1.06 -0.94 -0.59 FEIG 46
47 3DShot2 87.59 81.28 85.70 -0.27 -0.72 -0.15 87.59 81.28 85.70 -1.13 -1.40 -1.71 3DShot2 47
48 keasar−server 87.50 83.39 86.59 -0.30 -0.16 0.13 87.68 83.39 87.11 -1.10 -0.96 -0.66 keasar−server 48
49 YASARA 87.50 83.39 85.63 -0.30 -0.16 -0.17 87.50 83.39 87.26 -1.16 -0.96 -0.54 YASARA 49
50 mGenTHREADER 87.41 83.67 85.28 -0.34 -0.08 -0.28 87.41 83.67 85.28 -1.19 -0.90 -2.02 mGenTHREADER 50
51 GS−MetaServer2 87.41 83.36 85.75 -0.34 -0.16 -0.14 94.67 94.18 90.04 1.29 1.31 1.53 GS−MetaServer2 51
52 ACOMPMOD 87.22 83.18 81.90 -0.41 -0.21 -1.34 87.22 83.18 81.90 -1.25 -1.00 -4.55 ACOMPMOD 52
53 BAKER−ROBETTA 87.13 81.25 84.76 -0.44 -0.72 -0.44 88.05 82.05 86.58 -0.97 -1.24 -1.05 BAKER−ROBETTA 53
54 mariner1 87.04 82.54 86.90 -0.47 -0.38 0.22 94.85 94.36 89.74 1.35 1.34 1.31 mariner1 54
55 3D−JIGSAW_V3 86.86 79.50 84.86 -0.54 -1.19 -0.41 95.31 94.70 90.26 1.51 1.41 1.70 3D−JIGSAW_V3 55
56 MULTICOM−RANK 86.31 82.20 87.94 -0.74 -0.47 0.55 87.96 82.81 88.14 -1.00 -1.08 0.11 MULTICOM−RANK 56
57 SAM−T06−server 85.75 80.24 85.28 -0.95 -0.99 -0.28 87.04 83.33 85.28 -1.31 -0.97 -2.02 SAM−T06−server 57
58 CpHModels 85.57 81.04 85.84 -1.02 -0.78 -0.11 85.57 81.04 85.84 -1.82 -1.45 -1.61 CpHModels 58
59 FALCON 81.71 77.97 76.90 -2.44 -1.60 -2.89 89.52 83.70 87.47 -0.47 -0.89 -0.39 FALCON 59
60 METATASSER 79.41 76.53 73.59 -3.29 -1.98 -3.92 89.15 84.68 87.61 -0.59 -0.69 -0.28 METATASSER 60
61 Distill 77.67 69.88 71.85 -3.93 -3.75 -4.46 78.77 73.50 76.73 -4.14 -3.03 -8.41 Distill 61
62 COMA 73.53 68.84 66.34 -5.46 -4.02 -6.18 88.05 83.21 86.85 -0.97 -0.99 -0.85 COMA 62
63 FOLDpro 70.86 65.23 63.30 -6.45 -4.98 -7.13 94.58 94.09 88.92 1.26 1.29 0.70 FOLDpro 63
64 SAM−T02−server 70.77 64.71 63.74 -6.48 -5.12 -6.99 94.48 93.75 89.41 1.23 1.22 1.06 SAM−T02−server 64
65 FALCON_CONSENSUS 55.61 47.15 44.06 -12.09 -9.79 -13.12 81.71 77.97 76.90 -3.13 -2.09 -8.29 FALCON_CONSENSUS 65
66 MUFOLD−MD 20.59 18.75 35.85 -25.03 -17.34 -15.67 27.48 22.46 38.80 -21.64 -13.73 -36.76 MUFOLD−MD 66
67 RBO−Proteus 15.53 14.52 30.30 -26.90 -18.46 -17.40 16.09 14.61 32.38 -25.52 -15.37 -41.56 RBO−Proteus 67
68 RANDOM 12.79 11.24 12.79 -27.91 -19.34 -22.86 12.79 11.24 12.79 -26.65 -16.08 -56.19 RANDOM 68
69 schenk−torda−server 7.08 6.04 -7.61 -30.02 -20.72 -29.21 8.27 7.84 -4.46 -28.19 -16.79 -69.09 schenk−torda−server 69
70 BHAGEERATH                   -27.91 -19.34 -22.86                   -26.65 -16.08 -56.19 BHAGEERATH 70
71 FUGUE_KM                   -27.91 -19.34 -22.86                   -18.12 -12.98 -56.19 FUGUE_KM 71
72 LOOPP_Server                   -27.91 -19.34 -22.86                   -26.65 -16.08 -56.19 LOOPP_Server 72
73 mahmood−torda−server                   -27.91 -19.34 -22.86                   -26.65 -16.08 -56.19 mahmood−torda−server 73
74 test_http_server_01                   -27.91 -19.34 -22.86                   -26.65 -16.08 -56.19 test_http_server_01 74