T0441

Targets
387 388 389 390
391 392 393 394
395 396 397 398
399 400 401 402
403 404 405 406
407 408 409 410
411 412 413 414
415 416 417 418
419 420 421 422
423 424 425 426
427 428 429 430
431 432 433 434
435 436 437 438
439 440 441 442
443 444 445 446
447 448 449 450
451 452 453 454
455 456 457 458
459 460 461 462
463 464 465 466
467 468 469 470
471 472 473 474
475 476 477 478
479 480 481 482
483 484 485 486
487 488 489 490
491 492 493 494
495 496 497 498
499 500 501 502
503 504 505 506
507 508 509 510
511 512 513 514

T0441

PurR family transcriptional regulator from Vibrio parahaemolyticus

Target type: Server only

Target sequence:

>T0441 NP_799742, Vibrio parahaemolyticus, 342 residues
MSEPRKRRSTGNVTLADVAKQAGVGTMTVSRALRTPELVSDKLREKIQQVVDELGYIPNKAAGALASAESYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEASNTPVLEIAELSSKASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEGSSMGEHAYPSLTSAEFDYERMGTKAAEKLLHAIKGEPEERPTSMGFKLKRRASTAIN

Structure:
Method: X-ray, res=2.88Å, R/Rfree=0.22/0.28
Determined by: MCSG
PDB ID: 3d8u

3d8u_A cartoon
Cartoon diagram of 441: 3d8u chain A

PyMOL of 3d8u

Domains:  PyMOL of domains

Two domains, duplication. Residue ranges in PDB: 71-170,302-329 and 169-301,330-340. Residue ranges in target: 71-170,302-329 and 169-301,330-340.

441 domain evaluation plot
Correlation between weighted by the number of residues sum of GDT-TS scores for domain-based evlatuation (y, vertical axis) and whole chain GDT-TS (x, horizontal axis).

To compute the weighted sum, GDT-TS for each domain was multiplied by the domain length, and this sum was divided by the sum of domain lengths. Each point represents first server model. Green, gray and black points are top 10, bottom 25% and the rest of prediction models. Blue line is the best-fit slope line (intersection 0) to the top 10 server models. Red line is the diagonal. Slope and root mean square y-x distance for the top 10 models (average difference between the weighted sum of domain GDT-TS scores and the whole chain GDT-TS score) are shown above the plot.

Structure classification:

Periplasmic binding protein I fold.

CASP category:

Whole chain: Comparative modeling:medium.

1st domain: Comparative modeling:medium. 2nd domain: Comparative modeling:easy. Similar to the template, domain evaluation not necessary.

Closest templates:

2fep.

Target sequence - PDB file inconsistencies:

T0441    3d8u.pdb    T0441.pdb    PyMOL    PyMOL of domains    

T0441    1 MSEPRKRRSTGNVTLADVAKQAGVGTMTVSRALRTPELVSDKLREKIQQVVDELGYIPNKAAGALASAESYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEASNTPVLEIAELSSKASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEGSSMGEHAYPSLTSAEFDYERMGTKAAEKLLHAIKGEPEERPTSMGFKLKRRASTAIN 342
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~|||||||||||||~~
3d8uA   71 ----------------------------------------------------------------------YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEASNTPVLEIAELSSKASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEGSSMGEHAYPSLTSAEFDYERMGTKAAEKLLHAIKGE------SMGFKLKRRASTA-- 340

Residue change log: change 213, 288, 306, 329, MSE to MET;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 71-170, 302-321, 328-329 ; pdb 71-170, 302-321, 328-329

2nd domain: target 171-301, 330-340 ; pdb 171-301, 330-340

Sequence classification:

Periplasmic binding proteins and sugar binding domain of the LacI family (Peripla_BP_1) in Pfam.

Server predictions:

T0441:pdb 71-340:seq 71-340:CM_medium;   alignment

distribution of first scores
First models for T0441: Gaussian kernel density estimation for GDT-TS scores of the first server models, plotted at various bandwidths (=standard deviations). The GDT-TS scores are shown as a spectrum along the horizontal axis: each bar represents first server model. The bars are colored green, gray and black for top 10, bottom 25% and the rest of servers. The family of curves with varying bandwidth is shown. Bandwidth varies from 0.3 to 8.2 GDT-TS % units with a step of 0.1, which corresponds to the color ramp from magenta through blue to cyan. Thicker curves: red, yellow-framed brown and black, correspond to bandwidths 1, 2 and 4 respectively.

441_1:pdb 71-170,302-329:seq 71-170,302-329:CM_medium;   alignment

distribution of first scores
First models for T0441_1: Gaussian kernel density estimation for GDT-TS scores of the first server models, plotted at various bandwidths (=standard deviations). The GDT-TS scores are shown as a spectrum along the horizontal axis: each bar represents first server model. The bars are colored green, gray and black for top 10, bottom 25% and the rest of servers. The family of curves with varying bandwidth is shown. Bandwidth varies from 0.3 to 8.2 GDT-TS % units with a step of 0.1, which corresponds to the color ramp from magenta through blue to cyan. Thicker curves: red, yellow-framed brown and black, correspond to bandwidths 1, 2 and 4 respectively.

441_2:pdb 169-301,330-340:seq 169-301,330-340:CM_easy;   alignment

distribution of first scores
First models for T0441_2: Gaussian kernel density estimation for GDT-TS scores of the first server models, plotted at various bandwidths (=standard deviations). The GDT-TS scores are shown as a spectrum along the horizontal axis: each bar represents first server model. The bars are colored green, gray and black for top 10, bottom 25% and the rest of servers. The family of curves with varying bandwidth is shown. Bandwidth varies from 0.3 to 8.2 GDT-TS % units with a step of 0.1, which corresponds to the color ramp from magenta through blue to cyan. Thicker curves: red, yellow-framed brown and black, correspond to bandwidths 1, 2 and 4 respectively.

click on a score in the table below to display the model in PyMOL

# GROUP ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ ↓ GROUP #
T0441 441_1 441_2 T0441 441_1 441_2 T0441 441_1 441_2 T0441 441_1 441_2
First score First Z-score Best score Best Z-score
1 forecast 74.62 63.07 76.80 77.25 64.41 78.76 84.72 80.90 78.64 2.00 2.01 -0.04 0.20 -0.05 0.57 0.63 0.96 -0.82 74.62 63.07 76.86 77.66 64.41 78.86 84.90 81.31 81.41 1.35 1.46 -0.38 -0.29 -0.80 0.21 0.17 0.71 -0.13 forecast 1
2 Phyre_de_novo 74.24 60.01 80.51 80.12 70.56 79.90 87.33 79.57 83.70 1.88 1.20 0.99 1.15 1.24 0.85 1.64 0.75 1.02 74.24 60.01 80.51 80.12 70.56 79.90 87.33 79.57 83.70 1.23 0.63 0.74 1.06 0.76 0.60 1.15 0.31 0.76 Phyre_de_novo 2
3 FAMSD 73.96 62.91 77.19 76.03 61.68 77.92 84.90 82.81 80.01 1.79 1.96 0.07 -0.20 -0.62 0.37 0.70 1.28 -0.32 73.96 63.92 77.19 76.84 64.69 78.14 84.90 82.81 80.01 1.14 1.70 -0.28 -0.74 -0.73 -0.06 0.17 1.05 -0.68 FAMSD 3
4 3DShot2 73.77 63.60 76.45 76.43 61.61 77.54 84.90 79.69 78.95 1.73 2.15 -0.13 -0.07 -0.63 0.27 0.70 0.77 -0.71 73.77 63.60 76.45 76.43 61.61 77.54 84.90 79.69 78.95 1.08 1.61 -0.51 -0.97 -1.51 -0.28 0.17 0.34 -1.10 3DShot2 4
5 circle 73.48 61.87 76.11 77.05 64.28 77.76 84.20 82.35 78.30 1.63 1.69 -0.23 0.14 -0.08 0.33 0.43 1.20 -0.94 73.86 64.55 76.29 77.05 65.57 78.14 84.20 82.35 78.30 1.11 1.87 -0.56 -0.63 -0.50 -0.06 -0.12 0.95 -1.35 circle 5
6 MULTICOM−CMFR 73.48 58.84 79.59 77.66 66.33 78.42 85.24 79.80 83.43 1.63 0.90 0.73 0.34 0.35 0.49 0.83 0.78 0.92 73.48 58.84 79.59 77.66 66.33 78.42 85.24 79.80 83.43 0.99 0.32 0.46 -0.29 -0.31 0.05 0.31 0.36 0.66 MULTICOM−CMFR 6
7 METATASSER 73.20 63.26 79.57 79.10 63.59 78.16 87.33 85.24 83.57 1.54 2.06 0.73 0.81 -0.22 0.42 1.64 1.67 0.97 73.20 63.26 79.67 80.94 67.96 78.54 87.33 85.24 83.57 0.90 1.52 0.48 1.51 0.10 0.09 1.15 1.61 0.71 METATASSER 7
8 Pcons_local 73.20 60.80 78.70 77.46 65.03 79.27 86.11 75.93 81.36 1.54 1.41 0.49 0.27 0.08 0.69 1.17 0.15 0.17 73.20 60.80 80.02 79.71 72.61 80.24 86.11 78.18 82.75 0.90 0.85 0.59 0.84 1.28 0.72 0.66 -0.01 0.39 Pcons_local 8
9 RAPTOR 73.20 59.28 79.55 77.46 66.12 79.20 86.11 75.93 82.73 1.54 1.01 0.72 0.27 0.31 0.68 1.17 0.15 0.67 75.28 62.12 80.61 79.92 70.08 80.55 86.98 82.81 83.45 1.56 1.21 0.77 0.95 0.64 0.84 1.01 1.05 0.67 RAPTOR 9
10 keasar−server 73.11 64.27 77.86 77.05 65.30 79.37 84.20 78.65 79.87 1.51 2.32 0.26 0.14 0.14 0.72 0.43 0.60 -0.37 73.20 64.27 77.86 77.25 65.30 79.52 84.20 79.11 80.37 0.90 1.79 -0.08 -0.52 -0.57 0.45 -0.12 0.20 -0.54 keasar−server 10
11 3Dpro 73.11 61.17 77.36 76.84 60.11 78.80 85.07 80.90 79.54 1.51 1.51 0.12 0.07 -0.95 0.58 0.77 0.96 -0.49 73.11 61.17 77.36 76.84 60.11 78.80 85.07 80.90 79.54 0.87 0.95 -0.23 -0.74 -1.89 0.19 0.24 0.61 -0.86 3Dpro 11
12 GeneSilicoMetaServer 73.11 57.45 79.06 76.23 64.21 79.28 87.50 72.80 81.97 1.51 0.53 0.59 -0.13 -0.09 0.70 1.71 -0.36 0.39 73.11 61.40 79.51 79.92 70.63 80.21 87.50 80.03 82.05 0.87 1.01 0.43 0.95 0.78 0.71 1.22 0.41 0.12 GeneSilicoMetaServer 12
13 LEE−SERVER 73.01 60.29 80.33 79.51 69.94 79.22 86.98 84.90 83.97 1.48 1.28 0.94 0.95 1.11 0.68 1.51 1.62 1.12 73.01 60.29 82.56 82.17 75.68 82.22 88.89 84.90 85.34 0.84 0.71 1.37 2.19 2.06 1.46 1.79 1.53 1.41 LEE−SERVER 13
14 ACOMPMOD 72.16 63.19 72.22 72.95 59.56 71.41 83.51 69.10 76.97 1.21 2.04 -1.30 -1.22 -1.06 -1.22 0.16 -0.96 -1.43 72.16 63.19 72.22 77.66 65.37 75.87 83.51 69.10 76.97 0.57 1.50 -1.81 -0.29 -0.55 -0.90 -0.40 -2.09 -1.87 ACOMPMOD 14
15 Zhang−Server 71.21 57.51 80.50 78.69 66.94 78.74 87.67 85.13 84.65 0.91 0.55 0.98 0.68 0.48 0.57 1.78 1.66 1.37 71.50 57.73 80.81 79.10 66.94 78.99 87.85 85.76 84.97 0.36 0.01 0.83 0.50 -0.16 0.26 1.36 1.73 1.26 Zhang−Server 15
16 MULTICOM−REFINE 70.45 57.32 79.57 79.30 64.00 78.55 84.55 79.46 83.22 0.66 0.50 0.73 0.88 -0.13 0.52 0.56 0.73 0.85 70.55 57.32 79.81 79.51 64.00 78.67 85.24 79.69 83.52 0.06 -0.10 0.53 0.73 -0.90 0.14 0.31 0.34 0.69 MULTICOM−REFINE 16
17 FUGUE_KM 70.36 60.51 67.55 70.29 56.83 64.52 82.29 71.88 74.53 0.64 1.33 -2.59 -2.10 -1.63 -2.89 -0.31 -0.51 -2.31 70.36 60.51 67.55 76.23 64.07 72.90 82.29 71.88 74.53 0.00 0.77 -3.25 -1.08 -0.88 -2.00 -0.89 -1.45 -2.83 FUGUE_KM 17
18 MULTICOM−CLUSTER 70.36 56.12 79.72 79.10 67.35 78.77 84.90 78.88 83.31 0.64 0.18 0.77 0.81 0.57 0.57 0.70 0.63 0.88 71.21 59.82 79.72 79.10 67.35 78.77 84.90 80.15 83.31 0.27 0.58 0.50 0.50 -0.05 0.18 0.17 0.44 0.61 MULTICOM−CLUSTER 18
19 MUProt 70.27 57.45 79.68 79.51 63.12 78.56 85.07 70.60 83.40 0.61 0.53 0.76 0.95 -0.32 0.52 0.77 -0.72 0.91 70.83 57.70 79.87 79.71 64.89 78.82 85.24 80.03 83.52 0.15 0.01 0.54 0.84 -0.68 0.19 0.31 0.41 0.69 MUProt 19
20 MULTICOM−RANK 69.79 56.41 79.04 78.69 60.72 78.15 84.38 78.59 82.71 0.45 0.26 0.58 0.68 -0.82 0.42 0.50 0.59 0.66 71.21 58.84 79.98 79.71 67.35 79.33 86.28 80.32 83.72 0.27 0.32 0.58 0.84 -0.05 0.38 0.73 0.48 0.77 MULTICOM−RANK 20
21 HHpred5 69.79 55.34 78.60 77.66 64.14 79.57 82.64 72.22 80.97 0.45 -0.02 0.46 0.34 -0.10 0.77 -0.18 -0.45 0.03 69.79 55.34 78.60 77.66 64.14 79.57 82.64 72.22 80.97 -0.18 -0.64 0.15 -0.29 -0.87 0.47 -0.75 -1.38 -0.30 HHpred5 21
22 nFOLD3 69.51 52.59 70.86 63.52 53.01 62.41 86.28 83.28 81.47 0.36 -0.74 -1.68 -4.33 -2.43 -3.40 1.24 1.35 0.21 71.50 56.53 77.08 78.07 64.82 75.27 86.28 83.28 81.73 0.36 -0.31 -0.32 -0.06 -0.69 -1.12 0.73 1.16 -0.01 nFOLD3 22
23 BioSerf 69.41 52.94 82.06 82.79 72.13 81.67 87.33 84.90 84.91 0.33 -0.65 1.41 2.03 1.56 1.28 1.64 1.62 1.46 69.41 52.94 82.06 82.79 72.13 81.67 87.33 84.90 84.91 -0.30 -1.29 1.22 2.53 1.16 1.25 1.15 1.53 1.24 BioSerf 23
24 Poing 68.47 55.90 75.34 72.13 61.20 73.02 81.08 75.06 80.54 0.03 0.13 -0.44 -1.49 -0.72 -0.83 -0.79 0.01 -0.13 72.82 59.31 78.96 77.05 66.46 78.51 86.81 76.79 82.35 0.78 0.44 0.26 -0.63 -0.28 0.08 0.94 -0.33 0.24 Poing 24
25 Phyre2 68.47 55.90 75.34 72.13 61.20 73.02 81.08 75.06 80.54 0.03 0.13 -0.44 -1.49 -0.72 -0.83 -0.79 0.01 -0.13 72.82 59.31 78.96 77.05 66.46 78.51 86.81 76.79 82.35 0.78 0.44 0.26 -0.63 -0.28 0.08 0.94 -0.33 0.24 Phyre2 25
26 Phragment 68.47 55.90 75.34 72.13 61.20 73.02 81.08 75.06 80.54 0.03 0.13 -0.44 -1.49 -0.72 -0.83 -0.79 0.01 -0.13 72.82 59.47 78.96 77.05 66.46 78.51 86.81 76.79 82.35 0.78 0.49 0.26 -0.63 -0.28 0.08 0.94 -0.33 0.24 Phragment 26
27 SAM−T06−server 68.18 56.50 74.51 77.05 61.61 77.81 81.42 72.51 75.75 -0.06 0.28 -0.67 0.14 -0.63 0.34 -0.65 -0.41 -1.87 68.18 56.50 75.01 77.66 70.22 78.91 81.42 72.51 76.24 -0.69 -0.32 -0.95 -0.29 0.67 0.23 -1.24 -1.31 -2.16 SAM−T06−server 27
28 FEIG 67.99 53.12 80.77 77.05 71.86 80.37 83.85 78.99 83.81 -0.12 -0.60 1.06 0.14 1.51 0.96 0.29 0.65 1.06 75.00 60.04 81.39 78.89 71.86 80.63 89.06 86.86 84.60 1.47 0.64 1.01 0.39 1.09 0.87 1.85 1.98 1.12 FEIG 28
29 FALCON_CONSENSUS 67.90 54.45 76.96 78.48 62.36 75.44 82.12 79.46 81.48 -0.15 -0.26 0.01 0.61 -0.48 -0.24 -0.38 0.73 0.21 72.63 60.01 77.13 78.48 65.44 77.08 84.03 81.48 81.48 0.72 0.63 -0.30 0.16 -0.54 -0.45 -0.18 0.75 -0.10 FALCON_CONSENSUS 29
30 FALCON 67.80 56.25 74.29 76.23 65.30 72.38 80.21 68.87 79.51 -0.18 0.22 -0.73 -0.13 0.14 -0.98 -1.12 -1.00 -0.50 72.63 60.01 77.59 78.07 70.01 77.08 84.03 81.48 81.48 0.72 0.63 -0.16 -0.06 0.62 -0.45 -0.18 0.75 -0.10 FALCON 30
31 Frankenstein 67.61 53.47 76.78 78.07 62.09 75.03 82.12 73.78 81.43 -0.24 -0.51 -0.04 0.47 -0.53 -0.34 -0.38 -0.20 0.20 73.30 61.68 76.78 78.07 64.07 76.90 84.90 78.53 81.58 0.93 1.09 -0.41 -0.06 -0.88 -0.52 0.17 0.07 -0.07 Frankenstein 31
32 3D−JIGSAW_AEP 67.52 54.61 75.69 75.82 62.02 74.16 81.60 68.52 80.34 -0.27 -0.21 -0.34 -0.27 -0.55 -0.55 -0.58 -1.06 -0.20 67.61 54.89 75.69 76.23 63.39 74.17 81.94 69.10 80.34 -0.87 -0.76 -0.74 -1.08 -1.06 -1.53 -1.03 -2.09 -0.55 3D−JIGSAW_AEP 32
33 pro−sp3−TASSER 67.52 53.95 76.58 76.84 62.50 75.13 81.08 74.02 81.02 -0.27 -0.39 -0.10 0.07 -0.45 -0.31 -0.79 -0.16 0.05 72.16 59.94 79.80 79.30 67.28 78.39 86.46 84.14 83.84 0.57 0.61 0.52 0.61 -0.07 0.03 0.80 1.36 0.82 pro−sp3−TASSER 33
34 CpHModels 67.14 54.39 81.47 80.12 69.33 81.46 84.20 62.91 84.34 -0.39 -0.27 1.25 1.15 0.98 1.23 0.43 -1.98 1.25 67.14 54.39 81.47 80.12 69.33 81.46 84.20 62.91 84.34 -1.02 -0.89 1.04 1.06 0.45 1.17 -0.12 -3.51 1.02 CpHModels 34
35 MUSTER 67.14 52.97 76.09 76.23 61.61 73.66 81.25 74.54 81.35 -0.39 -0.64 -0.23 -0.13 -0.63 -0.67 -0.72 -0.07 0.17 68.84 57.99 79.68 79.30 72.75 80.78 87.33 77.03 83.37 -0.48 0.08 0.49 0.61 1.31 0.92 1.15 -0.27 0.64 MUSTER 35
36 SAM−T02−server 67.05 54.55 71.93 68.65 60.31 68.89 79.17 74.07 78.14 -0.42 -0.23 -1.38 -2.64 -0.91 -1.83 -1.53 -0.15 -1.00 71.69 55.97 79.28 78.89 69.88 79.72 82.81 78.59 81.99 0.42 -0.46 0.36 0.39 0.59 0.53 -0.68 0.08 0.10 SAM−T02−server 36
37 PS2−server 66.86 54.36 75.60 76.03 58.61 73.25 81.25 77.43 80.91 -0.48 -0.28 -0.37 -0.20 -1.26 -0.77 -0.72 0.40 0.01 74.81 59.15 80.46 76.84 64.14 79.29 88.19 79.28 84.17 1.41 0.40 0.73 -0.74 -0.87 0.37 1.50 0.24 0.95 PS2−server 37
38 3D−JIGSAW_V3 66.67 53.88 73.98 74.80 61.27 72.98 80.38 77.84 78.47 -0.54 -0.41 -0.82 -0.61 -0.70 -0.83 -1.06 0.46 -0.88 66.76 54.42 74.04 75.61 62.98 73.10 80.38 77.84 78.48 -1.14 -0.89 -1.25 -1.42 -1.16 -1.93 -1.66 -0.09 -1.28 3D−JIGSAW_V3 38
39 HHpred4 66.57 52.27 75.61 75.41 58.88 72.80 81.60 78.47 81.22 -0.57 -0.83 -0.37 -0.41 -1.20 -0.88 -0.58 0.57 0.12 66.57 52.27 75.61 75.41 58.88 72.80 81.60 78.47 81.22 -1.20 -1.47 -0.77 -1.53 -2.20 -2.04 -1.17 0.06 -0.21 HHpred4 39
40 HHpred2 66.48 52.72 75.68 75.20 59.09 72.89 81.42 78.18 81.26 -0.60 -0.71 -0.35 -0.48 -1.16 -0.86 -0.65 0.52 0.13 66.48 52.72 75.68 75.20 59.09 72.89 81.42 78.18 81.26 -1.22 -1.35 -0.75 -1.64 -2.14 -2.01 -1.24 -0.01 -0.19 HHpred2 40
41 PSI 66.38 56.09 74.75 69.67 57.38 70.34 86.11 67.94 81.74 -0.64 0.17 -0.60 -2.30 -1.52 -1.48 1.17 -1.15 0.31 69.03 56.09 79.80 79.92 73.09 80.13 86.11 75.87 82.50 -0.42 -0.43 0.52 0.95 1.40 0.68 0.66 -0.54 0.29 PSI 41
42 Distill 66.38 55.71 68.14 72.75 59.77 72.53 78.99 72.97 69.42 -0.64 0.08 -2.43 -1.28 -1.02 -0.94 -1.60 -0.33 -4.17 68.75 55.81 68.44 73.16 62.09 73.88 79.34 76.91 70.70 -0.51 -0.51 -2.98 -2.76 -1.38 -1.64 -2.09 -0.30 -4.33 Distill 42
43 BAKER−ROBETTA 66.38 54.29 80.00 77.87 67.35 79.97 83.68 57.41 82.97 -0.64 -0.30 0.85 0.41 0.57 0.86 0.23 -2.87 0.75 66.67 55.62 80.01 78.07 70.70 80.07 83.85 57.52 83.09 -1.16 -0.56 0.59 -0.06 0.79 0.66 -0.26 -4.75 0.53 BAKER−ROBETTA 43
44 COMA−M 66.19 51.80 81.02 79.92 71.17 78.75 87.33 81.89 85.53 -0.70 -0.95 1.13 1.08 1.36 0.57 1.64 1.13 1.68 67.52 54.89 81.44 80.94 73.43 81.51 87.33 83.56 85.53 -0.90 -0.76 1.03 1.51 1.49 1.19 1.15 1.22 1.48 COMA−M 44
45 YASARA 66.00 56.16 62.03 61.27 51.98 53.39 79.86 76.27 74.71 -0.76 0.19 -4.11 -5.07 -2.65 -5.60 -1.26 0.21 -2.25 66.67 56.16 63.32 63.93 56.97 57.50 81.08 76.27 74.78 -1.16 -0.41 -4.56 -7.83 -2.68 -7.72 -1.38 -0.45 -2.73 YASARA 45
46 fais−server 66.00 52.08 79.94 79.30 71.65 79.71 83.68 72.57 83.02 -0.76 -0.88 0.83 0.88 1.46 0.80 0.23 -0.40 0.77 68.94 57.16 80.03 79.51 72.40 80.19 86.63 78.82 83.02 -0.45 -0.14 0.59 0.73 1.23 0.70 0.87 0.14 0.50 fais−server 46
47 GS−MetaServer2 65.53 51.26 80.35 79.71 72.47 80.19 83.51 78.41 83.36 -0.91 -1.09 0.94 1.01 1.64 0.92 0.16 0.56 0.90 72.73 58.27 80.35 79.71 72.47 80.19 83.68 78.41 83.38 0.75 0.16 0.69 0.84 1.24 0.70 -0.33 0.04 0.64 GS−MetaServer2 47
48 COMA 65.44 52.81 80.04 78.89 71.11 79.95 83.33 79.28 83.02 -0.94 -0.69 0.86 0.74 1.35 0.86 0.09 0.70 0.77 72.06 56.72 81.44 78.89 71.11 81.51 84.38 81.25 85.53 0.54 -0.26 1.03 0.39 0.90 1.19 -0.04 0.69 1.48 COMA 48
49 Pcons_dot_net 65.34 52.59 80.02 79.71 72.61 80.24 82.99 59.90 82.75 -0.97 -0.74 0.85 1.01 1.66 0.93 -0.04 -2.47 0.67 73.20 60.80 80.39 79.71 72.61 80.31 86.11 77.14 83.32 0.90 0.85 0.70 0.84 1.28 0.75 0.66 -0.25 0.62 Pcons_dot_net 49
50 Pcons_multi 65.34 52.59 80.02 79.71 72.61 80.24 82.99 59.90 82.75 -0.97 -0.74 0.85 1.01 1.66 0.93 -0.04 -2.47 0.67 68.47 56.53 81.09 80.12 73.43 80.82 87.67 79.34 84.85 -0.60 -0.31 0.92 1.06 1.49 0.94 1.29 0.26 1.22 Pcons_multi 50
51 FFASstandard 65.25 52.62 79.81 79.30 70.97 80.12 82.64 78.47 82.51 -1.00 -0.74 0.79 0.88 1.32 0.90 -0.18 0.57 0.59 73.77 60.64 79.81 79.30 70.97 80.12 84.72 81.02 82.51 1.08 0.80 0.53 0.61 0.86 0.68 0.10 0.64 0.30 FFASstandard 51
52 mariner1 65.06 54.51 68.72 67.21 56.42 64.42 78.65 74.59 76.30 -1.06 -0.24 -2.27 -3.11 -1.72 -2.92 -1.73 -0.07 -1.67 70.74 60.70 76.18 76.84 69.06 77.06 81.60 74.59 80.24 0.12 0.82 -0.59 -0.74 0.38 -0.46 -1.17 -0.83 -0.59 mariner1 52
53 SAM−T08−server 65.06 50.69 79.28 78.89 69.60 79.26 84.55 79.34 82.33 -1.06 -1.24 0.65 0.74 1.04 0.69 0.56 0.71 0.52 69.60 58.08 79.28 78.89 69.60 79.31 84.55 79.34 82.33 -0.24 0.11 0.36 0.39 0.52 0.38 0.03 0.26 0.23 SAM−T08−server 53
54 FFASflextemplate 64.87 51.93 79.22 78.89 70.01 79.72 82.64 61.40 81.89 -1.12 -0.92 0.63 0.74 1.12 0.80 -0.18 -2.22 0.36 65.25 52.62 79.81 79.30 70.97 80.12 82.64 78.47 82.51 -1.61 -1.38 0.53 0.61 0.86 0.68 -0.75 0.06 0.30 FFASflextemplate 54
55 FFASsuboptimal 64.87 51.93 79.22 78.89 70.01 79.72 82.64 61.40 81.89 -1.12 -0.92 0.63 0.74 1.12 0.80 -0.18 -2.22 0.36 66.19 53.00 80.37 79.51 71.86 80.12 84.03 78.47 83.59 -1.32 -1.27 0.70 0.73 1.09 0.68 -0.18 0.06 0.72 FFASsuboptimal 55
56 pipe_int 64.77 51.52 79.71 78.69 69.67 79.71 82.99 78.12 82.70 -1.15 -1.02 0.77 0.68 1.05 0.80 -0.04 0.51 0.66 64.77 51.52 79.71 78.69 69.67 79.71 82.99 78.12 82.70 -1.76 -1.67 0.49 0.28 0.53 0.52 -0.61 -0.02 0.37 pipe_int 56
57 Fiser−M4T 64.77 49.02 79.60 79.51 71.31 80.46 85.24 72.63 81.92 -1.15 -1.68 0.74 0.95 1.39 0.98 0.83 -0.39 0.37 64.77 49.02 79.60 79.51 71.31 80.46 85.24 72.63 81.92 -1.76 -2.35 0.46 0.73 0.95 0.80 0.31 -1.28 0.07 Fiser−M4T 57
58 MUFOLD−Server 64.68 49.27 70.68 74.39 60.31 71.74 77.26 66.72 74.03 -1.18 -1.61 -1.73 -0.74 -0.91 -1.14 -2.27 -1.35 -2.49 65.62 51.58 73.17 74.59 60.31 72.00 79.86 75.23 78.59 -1.50 -1.66 -1.52 -1.98 -1.83 -2.34 -1.87 -0.69 -1.24 MUFOLD−Server 58
59 MUFOLD−MD 64.49 48.90 70.76 74.59 59.29 71.94 77.43 66.44 74.01 -1.24 -1.71 -1.70 -0.68 -1.12 -1.09 -2.20 -1.40 -2.50 65.53 52.15 73.17 75.20 63.32 71.94 79.86 75.23 78.60 -1.52 -1.50 -1.52 -1.64 -1.07 -2.36 -1.87 -0.69 -1.23 MUFOLD−MD 59
60 rehtnap 64.02 51.52 65.97 73.36 59.43 70.90 71.18 63.89 67.69 -1.39 -1.02 -3.03 -1.08 -1.09 -1.34 -4.64 -1.81 -4.80 64.02 51.52 65.97 73.36 63.52 70.90 74.31 67.07 67.73 -2.00 -1.67 -3.74 -2.65 -1.02 -2.75 -4.12 -2.56 -5.49 rehtnap 60
61 Pushchino 63.35 50.28 67.30 72.75 57.58 67.79 76.74 63.66 71.71 -1.60 -1.35 -2.66 -1.28 -1.48 -2.10 -2.47 -1.85 -3.34 63.35 50.28 67.30 72.75 57.58 67.79 76.74 63.66 71.71 -2.21 -2.01 -3.33 -2.99 -2.53 -3.90 -3.14 -3.34 -3.93 Pushchino 61
62 GS−KudlatyPred 63.26 46.94 79.45 78.69 72.13 80.29 81.25 77.08 81.81 -1.63 -2.23 0.69 0.68 1.56 0.94 -0.72 0.34 0.33 63.26 46.94 79.45 78.69 72.13 80.29 81.25 77.08 81.81 -2.24 -2.92 0.41 0.28 1.16 0.74 -1.31 -0.26 0.02 GS−KudlatyPred 62
63 OLGAFS 61.55 49.62 66.25 64.55 49.25 61.00 77.78 73.84 75.03 -2.18 -1.52 -2.95 -3.99 -3.22 -3.75 -2.07 -0.19 -2.13 61.84 49.97 66.25 64.96 52.73 61.10 77.95 73.84 75.12 -2.69 -2.10 -3.65 -7.27 -3.75 -6.39 -2.65 -1.00 -2.60 OLGAFS 63
64 mGenTHREADER 53.98 41.79 79.28 78.89 69.88 79.72 63.54 51.97 81.99 -4.60 -3.58 0.65 0.74 1.09 0.80 -7.61 -3.76 0.40 53.98 41.79 79.28 78.89 69.88 79.72 63.54 51.97 81.99 -5.17 -4.32 0.36 0.39 0.59 0.53 -8.49 -6.02 0.10 mGenTHREADER 64
65 FOLDpro 43.18 31.31 47.26 54.51 45.49 53.48 51.74 40.97 50.19 -8.05 -6.33 -8.19 -7.31 -4.00 -5.57 -12.19 -5.56 -11.16 48.11 39.33 47.26 60.66 52.46 54.51 61.11 51.39 54.47 -7.03 -4.99 -9.50 -9.63 -3.82 -8.83 -9.47 -6.15 -10.68 FOLDpro 65
66 RBO−Proteus 13.73 10.38 35.22 29.71 22.47 43.49 23.44 19.96 38.48 -17.45 -11.82 -11.52 -15.49 -8.81 -8.00 -23.20 -8.99 -15.41 15.34 13.38 35.22 33.20 28.96 43.73 23.44 19.96 38.48 -17.38 -12.04 -13.21 -24.72 -9.77 -12.84 -24.74 -13.36 -16.95 RBO−Proteus 66
67 RANDOM 10.67 8.91 10.67 19.24 16.38 19.24 18.51 14.88 18.51 -18.43 -12.20 -18.29 -18.95 -10.08 -13.90 -25.12 -9.82 -22.67 10.67 8.91 10.67 19.24 16.38 19.24 18.51 14.88 18.51 -18.86 -13.25 -20.78 -32.39 -12.95 -21.93 -26.74 -14.52 -24.77 RANDOM 67
68 schenk−torda−server 7.39 6.57 7.18 12.09 10.18 16.56 12.33 11.63 13.47 -19.48 -12.82 -19.26 -21.31 -11.38 -14.55 -27.52 -10.35 -24.50 8.05 6.66 11.44 16.60 14.41 22.44 12.33 11.63 17.78 -19.69 -13.86 -20.54 -33.84 -13.45 -20.75 -29.24 -15.27 -25.05 schenk−torda−server 68
69 panther_server 0.00 0.00 -23.39 0.00 0.00 -12.61 0.00 0.00 -13.62 -21.84 -14.54 -27.70 -25.30 -13.51 -21.64 -32.31 -12.25 -34.34 1.71 1.64 -23.21 3.69 3.55 -12.22 0.00 0.00 -13.62 -21.69 -15.23 -31.22 -40.93 -16.20 -33.62 -34.24 -17.93 -37.35 panther_server 69
70 BHAGEERATH                                                       -18.43 -12.20 -18.29 -18.95 -10.08 -13.90 -25.12 -9.82 -22.67                                                       -18.86 -13.25 -20.78 -32.39 -12.95 -21.93 -26.74 -14.52 -24.77 BHAGEERATH 70
71 LOOPP_Server                                                       -18.43 -12.20 -18.29 -18.95 -10.08 -13.90 -25.12 -9.82 -22.67                                                       -18.86 -13.25 -20.78 -32.39 -12.95 -21.93 -26.74 -14.52 -24.77 LOOPP_Server 71
72 huber−torda−server                                                       -18.43 -12.20 -18.29 -18.95 -10.08 -13.90 -25.12 -9.82 -22.67                                                       -18.86 -13.25 -20.78 -32.39 -12.95 -21.93 -26.74 -14.52 -24.77 huber−torda−server 72
73 mahmood−torda−server                                                       -18.43 -12.20 -18.29 -18.95 -10.08 -13.90 -25.12 -9.82 -22.67                                                       -18.86 -13.25 -20.78 -32.39 -12.95 -21.93 -26.74 -14.52 -24.77 mahmood−torda−server 73
74 test_http_server_01                                                       -18.43 -12.20 -18.29 -18.95 -10.08 -13.90 -25.12 -9.82 -22.67                                                       -18.86 -13.25 -20.78 -32.39 -12.95 -21.93 -26.74 -14.52 -24.77 test_http_server_01 74