T0452
putative homoserine dehydrogenase (NP_069768.1) from Archaeoglobus fulgidus
Target sequence:
>T0452 NP_069768.1, ARCHAEOGLOBUS FULGIDUS, 326 residues
MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGAMPVVKLAKRYLALCEIESVKGIFNGTCNYILSRMEEERLPYEHILKEAQELGYAEADPSYDVEGIDAALKLVIIANTIGVKASYEDVEVTGITQITPEAFQVAAEKGYTIRLIAEVSREKLKVSPRLVPFHHPLAIKGTMNAAMFKTDTAGSIFVAGRGAGKEETASAILSDLYEIYAGPR
Structure:
Determined by:
JCSG
PDB ID: 3do5
Cartoon diagram of 452: 3do5 chain A
Domains: PyMOL of domains
Two domains. Residue ranges in PDB: 1-144,304-324 and 145-303. Residue ranges in target: 1-144,304-324 and 145-303.
Correlation between weighted by the number of residues sum of GDT-TS scores for domain-based evlatuation (y, vertical axis)
and whole chain GDT-TS (x, horizontal axis).
To compute the weighted sum, GDT-TS for each domain was multiplied by the domain length, and this sum was divided by the sum of domain lengths. Each point represents first server model. Green, gray and black points are top 10, bottom 25% and the rest of prediction models. Blue line is the best-fit slope line (intersection 0) to the top 10 server models. Red line is the diagonal. Slope and root mean square y-x distance for the top 10 models (average difference between the weighted sum of domain GDT-TS scores and the whole chain GDT-TS score) are shown above the plot.
Structure classification:
N-domain: NAD(P)-binding Rossmann fold. C-domain: FwdE/GAPDH domain-like fold.
CASP category:
Whole chain: Comparative modeling:easy.
1st domain: Comparative modeling:easy. 2nd domain: Comparative modeling:easy.
Closest templates:
2ejw.
Target sequence - PDB file inconsistencies:
T0452 3do5.pdb T0452.pdb PyMOL PyMOL of domains
T0452 1 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGAMPVVKLAKRYLALCEIESVKGIFNGTCNYILSRMEEERLPYEHILKEAQELGYAEADPSYDVEGIDAALKLVIIANTIGVKASYEDVEVTGITQITPEAFQVAAEKGYTIRLIAEVSREKLKVSPRLVPFHHPLAIKGTMNAAMFKTDTAGSIFVAGRGAGKEETASAILSDLYEIYAGPR 326 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~ 3do5A 1 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYDVLIEASVTR----EGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGAMPVVKLAKRYLALCEIESVKGIFNGTCNYILSRMEEERLPYEHILKEAQELGYAEADPSYDVEGIDAALKLVIIANTIGVKASYEDVEVTGITQITPEAFQVAAEKGYTIRLIAEVSREKLKVSPRLVPFHHPLAIKGTMNAAMFKTDTAGSIFVAGRGAGKEETASAILSDLYEIYAG-- 324
Residue change log: change 1, 58, 64, 126, 137, 146, 179, 285, 289, MSE to MET;
We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:
1st domain: target 1-90, 95-144, 304-324 ; pdb 1-90, 95-144, 304-324
2nd domain: target 145-303 ; pdb 145-303
Sequence classification:
N-domain: Homoserine dehydrogenase, NAD binding (NAD_binding_3), C-domain:Homoserine dehydrogenase (Homoserine_dh) in Pfam.
Server predictions:
T0452:pdb 1-324:seq 1-324:CM_easy;   alignment
First models for T0452:
Gaussian kernel density estimation
for GDT-TS scores of the
first server models, plotted at various bandwidths (=standard deviations).
The GDT-TS scores are shown as a spectrum along
the horizontal axis: each bar represents first server model. The bars are
colored
green, gray and black for top 10, bottom 25% and the rest of servers.
The family of curves with varying
bandwidth is shown. Bandwidth varies from 0.3 to 8.2 GDT-TS % units
with a step of 0.1, which corresponds to the
color ramp from magenta through blue to cyan. Thicker curves: red,
yellow-framed brown and black, correspond to bandwidths 1, 2 and 4
respectively.
452_1:pdb 1-144,304-324:seq 1-144,304-324:CM_easy;   alignment
First models for T0452_1:
Gaussian kernel density estimation
for GDT-TS scores of the
first server models, plotted at various bandwidths (=standard deviations).
The GDT-TS scores are shown as a spectrum along
the horizontal axis: each bar represents first server model. The bars are
colored
green, gray and black for top 10, bottom 25% and the rest of servers.
The family of curves with varying
bandwidth is shown. Bandwidth varies from 0.3 to 8.2 GDT-TS % units
with a step of 0.1, which corresponds to the
color ramp from magenta through blue to cyan. Thicker curves: red,
yellow-framed brown and black, correspond to bandwidths 1, 2 and 4
respectively.
452_2:pdb 145-303:seq 145-303:CM_easy;   alignment
First models for T0452_2:
Gaussian kernel density estimation
for GDT-TS scores of the
first server models, plotted at various bandwidths (=standard deviations).
The GDT-TS scores are shown as a spectrum along
the horizontal axis: each bar represents first server model. The bars are
colored
green, gray and black for top 10, bottom 25% and the rest of servers.
The family of curves with varying
bandwidth is shown. Bandwidth varies from 0.3 to 8.2 GDT-TS % units
with a step of 0.1, which corresponds to the
color ramp from magenta through blue to cyan. Thicker curves: red,
yellow-framed brown and black, correspond to bandwidths 1, 2 and 4
respectively.
click on a score in the table below to display the model in PyMOL
# | GROUP ↓ | TS ↓ | TR ↓ | CS ↓ | TS ↓ | TR ↓ | CS ↓ | TS ↓ | TR ↓ | CS ↓ | TS ↓ | TR ↓ | CS ↓ | TS ↓ | TR ↓ | CS ↓ | TS ↓ | TR ↓ | CS ↓ | TS ↓ | TR ↓ | CS ↓ | TS ↓ | TR ↓ | CS ↓ | TS ↓ | TR ↓ | CS ↓ | TS ↓ | TR ↓ | CS ↓ | TS ↓ | TR ↓ | CS ↓ | TS ↓ | TR ↓ | CS ↓ | ↓ GROUP | # |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T0452 | 452_1 | 452_2 | T0452 | 452_1 | 452_2 | T0452 | 452_1 | 452_2 | T0452 | 452_1 | 452_2 | ||||||||||||||||||||||||||||
First score | First Z-score | Best score | Best Z-score | ||||||||||||||||||||||||||||||||||||
1 | MUProt | 83.83 | 78.05 | 84.31 | 84.47 | 80.02 | 78.95 | 93.40 | 91.93 | 91.43 | 1.41 | 1.55 | 1.15 | 1.44 | 1.43 | 1.27 | 0.96 | 1.18 | 0.91 | 84.61 | 78.05 | 84.51 | 84.63 | 80.59 | 79.18 | 93.55 | 91.93 | 91.61 | 1.58 | 1.59 | 1.14 | 1.16 | 1.18 | 0.98 | 0.84 | 1.03 | 0.81 | MUProt | 1 |
2 | LEE−SERVER | 83.44 | 77.81 | 83.42 | 84.16 | 80.95 | 78.74 | 92.30 | 90.20 | 89.86 | 1.37 | 1.52 | 1.07 | 1.41 | 1.51 | 1.25 | 0.86 | 1.04 | 0.80 | 85.39 | 81.85 | 83.70 | 84.78 | 80.95 | 78.93 | 92.61 | 90.51 | 90.26 | 1.67 | 2.03 | 1.07 | 1.17 | 1.21 | 0.96 | 0.75 | 0.90 | 0.70 | LEE−SERVER | 2 |
3 | MULTICOM−CLUSTER | 83.28 | 79.69 | 83.89 | 83.23 | 80.44 | 78.03 | 91.51 | 89.83 | 91.48 | 1.36 | 1.70 | 1.11 | 1.32 | 1.46 | 1.18 | 0.79 | 1.01 | 0.92 | 83.28 | 79.92 | 83.89 | 83.23 | 80.44 | 78.92 | 93.24 | 92.19 | 91.48 | 1.42 | 1.80 | 1.09 | 1.00 | 1.16 | 0.96 | 0.81 | 1.05 | 0.80 | MULTICOM−CLUSTER | 3 |
4 | MULTICOM−REFINE | 83.05 | 78.78 | 83.30 | 83.85 | 81.26 | 78.09 | 92.14 | 89.41 | 90.27 | 1.34 | 1.62 | 1.06 | 1.38 | 1.54 | 1.19 | 0.84 | 0.98 | 0.83 | 84.53 | 78.78 | 84.53 | 84.47 | 81.26 | 79.14 | 93.24 | 91.77 | 91.66 | 1.57 | 1.67 | 1.14 | 1.14 | 1.24 | 0.98 | 0.81 | 1.01 | 0.81 | MULTICOM−REFINE | 4 |
5 | Phyre_de_novo | 82.81 | 78.59 | 82.80 | 83.70 | 79.04 | 78.23 | 91.35 | 89.05 | 89.22 | 1.31 | 1.60 | 1.02 | 1.36 | 1.34 | 1.20 | 0.77 | 0.95 | 0.75 | 82.81 | 78.59 | 82.80 | 83.70 | 79.04 | 78.23 | 91.35 | 89.05 | 89.22 | 1.36 | 1.65 | 0.99 | 1.05 | 1.01 | 0.88 | 0.63 | 0.78 | 0.62 | Phyre_de_novo | 5 |
6 | MULTICOM−RANK | 82.42 | 77.06 | 83.63 | 83.23 | 78.78 | 79.05 | 92.77 | 83.33 | 90.09 | 1.27 | 1.45 | 1.09 | 1.32 | 1.32 | 1.28 | 0.90 | 0.50 | 0.81 | 82.42 | 77.06 | 83.63 | 83.23 | 78.78 | 79.05 | 92.77 | 85.38 | 90.09 | 1.32 | 1.47 | 1.06 | 1.00 | 0.99 | 0.97 | 0.77 | 0.46 | 0.69 | MULTICOM−RANK | 6 |
7 | RAPTOR | 82.03 | 77.14 | 83.23 | 84.01 | 79.66 | 80.49 | 90.72 | 88.52 | 88.85 | 1.24 | 1.46 | 1.06 | 1.40 | 1.40 | 1.42 | 0.72 | 0.91 | 0.72 | 82.27 | 77.14 | 84.19 | 85.09 | 80.80 | 80.96 | 91.67 | 89.67 | 89.07 | 1.30 | 1.48 | 1.11 | 1.21 | 1.20 | 1.17 | 0.66 | 0.83 | 0.61 | RAPTOR | 7 |
8 | Zhang−Server | 81.48 | 75.50 | 82.29 | 80.90 | 77.38 | 77.14 | 92.14 | 85.11 | 89.20 | 1.18 | 1.30 | 0.98 | 1.08 | 1.19 | 1.10 | 0.84 | 0.64 | 0.75 | 82.03 | 75.50 | 82.86 | 82.76 | 78.52 | 78.59 | 92.45 | 90.04 | 89.20 | 1.27 | 1.29 | 0.99 | 0.94 | 0.96 | 0.92 | 0.74 | 0.86 | 0.62 | Zhang−Server | 8 |
9 | METATASSER | 80.78 | 74.38 | 80.85 | 79.97 | 76.14 | 75.63 | 91.98 | 89.78 | 88.59 | 1.12 | 1.19 | 0.87 | 0.99 | 1.08 | 0.95 | 0.83 | 1.01 | 0.70 | 81.48 | 74.38 | 80.85 | 84.01 | 80.38 | 78.47 | 91.98 | 90.20 | 88.59 | 1.21 | 1.16 | 0.81 | 1.09 | 1.15 | 0.91 | 0.69 | 0.88 | 0.57 | METATASSER | 9 |
10 | BioSerf | 79.53 | 70.62 | 82.99 | 84.16 | 79.40 | 80.96 | 89.47 | 82.55 | 86.82 | 0.99 | 0.83 | 1.04 | 1.41 | 1.37 | 1.47 | 0.61 | 0.43 | 0.57 | 79.53 | 70.62 | 82.99 | 84.16 | 79.40 | 80.96 | 89.47 | 82.55 | 86.82 | 0.97 | 0.72 | 1.01 | 1.10 | 1.05 | 1.17 | 0.44 | 0.21 | 0.43 | BioSerf | 10 |
11 | FEIG | 79.30 | 70.65 | 76.66 | 76.40 | 70.39 | 73.12 | 88.21 | 85.80 | 83.14 | 0.97 | 0.83 | 0.53 | 0.62 | 0.58 | 0.71 | 0.49 | 0.69 | 0.29 | 79.30 | 70.65 | 76.66 | 76.40 | 70.39 | 73.12 | 88.36 | 85.80 | 83.14 | 0.95 | 0.72 | 0.44 | 0.21 | 0.12 | 0.35 | 0.33 | 0.49 | 0.13 | FEIG | 11 |
12 | Fiser−M4T | 79.22 | 72.19 | 81.46 | 82.92 | 77.54 | 77.27 | 86.95 | 81.81 | 87.75 | 0.96 | 0.98 | 0.92 | 1.28 | 1.21 | 1.11 | 0.38 | 0.38 | 0.64 | 79.22 | 72.19 | 81.46 | 82.92 | 77.54 | 77.27 | 86.95 | 81.81 | 87.75 | 0.94 | 0.90 | 0.87 | 0.96 | 0.86 | 0.78 | 0.20 | 0.15 | 0.50 | Fiser−M4T | 12 |
13 | MULTICOM−CMFR | 77.89 | 72.53 | 80.08 | 82.92 | 77.02 | 77.44 | 86.95 | 81.50 | 84.57 | 0.84 | 1.01 | 0.80 | 1.28 | 1.16 | 1.13 | 0.38 | 0.35 | 0.40 | 83.91 | 80.05 | 83.33 | 82.92 | 78.73 | 77.53 | 92.30 | 84.54 | 90.94 | 1.50 | 1.82 | 1.04 | 0.96 | 0.98 | 0.81 | 0.72 | 0.38 | 0.76 | MULTICOM−CMFR | 13 |
14 | pro−sp3−TASSER | 76.64 | 69.48 | 75.71 | 77.80 | 71.79 | 71.23 | 88.52 | 83.18 | 83.24 | 0.72 | 0.72 | 0.45 | 0.77 | 0.70 | 0.53 | 0.52 | 0.48 | 0.30 | 80.94 | 74.58 | 82.21 | 80.28 | 77.69 | 77.56 | 93.55 | 92.19 | 90.61 | 1.14 | 1.18 | 0.94 | 0.66 | 0.87 | 0.81 | 0.84 | 1.05 | 0.73 | pro−sp3−TASSER | 14 |
15 | PS2−server | 76.41 | 64.43 | 78.44 | 77.95 | 69.82 | 73.71 | 89.62 | 85.22 | 85.89 | 0.69 | 0.23 | 0.67 | 0.78 | 0.53 | 0.77 | 0.62 | 0.65 | 0.50 | 76.41 | 64.43 | 78.44 | 79.97 | 75.41 | 76.38 | 89.62 | 85.22 | 85.89 | 0.60 | 0.60 | 0.62 | 0.64 | 0.69 | 0.46 | 0.44 | 0.35 | PS2−server | 15 | |
16 | pipe_int | 75.16 | 65.52 | 77.18 | 80.90 | 76.76 | 77.18 | 83.33 | 76.62 | 80.89 | 0.57 | 0.34 | 0.57 | 1.08 | 1.14 | 1.10 | 0.06 | 0.12 | 75.16 | 65.52 | 77.18 | 80.90 | 76.76 | 77.18 | 83.33 | 76.62 | 80.89 | 0.45 | 0.12 | 0.49 | 0.73 | 0.78 | 0.77 | pipe_int | 16 | ||||
17 | SAM−T08−server | 74.53 | 66.15 | 76.87 | 81.68 | 77.43 | 78.35 | 79.40 | 67.56 | 79.11 | 0.51 | 0.40 | 0.55 | 1.16 | 1.20 | 1.22 | 74.53 | 66.15 | 76.87 | 81.68 | 77.43 | 78.35 | 85.69 | 81.50 | 79.64 | 0.38 | 0.20 | 0.46 | 0.82 | 0.85 | 0.90 | 0.07 | 0.12 | SAM−T08−server | 17 | ||||
18 | GS−MetaServer2 | 72.50 | 63.54 | 73.66 | 66.77 | 61.39 | 64.03 | 89.62 | 76.36 | 86.91 | 0.31 | 0.15 | 0.29 | 0.62 | 0.57 | 72.50 | 63.54 | 73.66 | 80.75 | 74.12 | 75.64 | 89.62 | 76.36 | 86.91 | 0.14 | 0.17 | 0.71 | 0.50 | 0.61 | 0.46 | 0.43 | GS−MetaServer2 | 18 | ||||||
19 | forecast | 72.11 | 61.04 | 73.80 | 80.75 | 76.81 | 77.10 | 78.46 | 71.02 | 73.80 | 0.28 | 0.30 | 1.06 | 1.14 | 1.09 | 73.44 | 67.19 | 74.22 | 81.68 | 76.81 | 77.23 | 88.52 | 86.11 | 86.85 | 0.25 | 0.32 | 0.22 | 0.82 | 0.78 | 0.78 | 0.35 | 0.52 | 0.43 | forecast | 19 | ||||
20 | 3DShot2 | 72.03 | 63.28 | 72.94 | 79.35 | 74.38 | 75.83 | 77.99 | 73.48 | 73.53 | 0.27 | 0.12 | 0.23 | 0.92 | 0.93 | 0.97 | 72.03 | 63.28 | 72.94 | 79.35 | 74.38 | 75.83 | 77.99 | 73.48 | 73.53 | 0.08 | 0.11 | 0.55 | 0.53 | 0.63 | 3DShot2 | 20 | |||||||
21 | GS−KudlatyPred | 71.95 | 63.67 | 72.77 | 80.44 | 75.26 | 76.39 | 77.36 | 71.38 | 72.48 | 0.26 | 0.16 | 0.21 | 1.03 | 1.01 | 1.03 | 71.95 | 63.67 | 72.77 | 80.44 | 75.26 | 76.39 | 77.36 | 71.38 | 72.48 | 0.07 | 0.10 | 0.68 | 0.62 | 0.69 | GS−KudlatyPred | 21 | |||||||
22 | fais−server | 71.72 | 63.96 | 74.19 | 82.14 | 78.42 | 77.52 | 77.36 | 70.23 | 74.20 | 0.24 | 0.19 | 0.33 | 1.21 | 1.29 | 1.14 | 71.72 | 64.53 | 74.60 | 82.14 | 78.42 | 77.52 | 89.47 | 85.69 | 87.81 | 0.05 | 0.01 | 0.26 | 0.87 | 0.95 | 0.81 | 0.44 | 0.48 | 0.51 | fais−server | 22 | |||
23 | MUSTER | 71.17 | 64.40 | 74.17 | 68.32 | 63.15 | 64.55 | 90.88 | 88.68 | 86.77 | 0.19 | 0.23 | 0.33 | 0.73 | 0.92 | 0.56 | 72.19 | 65.05 | 74.17 | 78.26 | 72.98 | 71.99 | 90.88 | 88.68 | 86.77 | 0.10 | 0.07 | 0.22 | 0.43 | 0.39 | 0.23 | 0.58 | 0.74 | 0.42 | MUSTER | 23 | |||
24 | COMA−M | 70.94 | 63.65 | 75.04 | 68.32 | 62.63 | 66.58 | 89.47 | 80.08 | 86.62 | 0.16 | 0.16 | 0.40 | 0.08 | 0.61 | 0.24 | 0.55 | 74.22 | 68.02 | 76.16 | 70.50 | 64.80 | 67.26 | 90.57 | 87.84 | 88.12 | 0.34 | 0.41 | 0.40 | 0.55 | 0.67 | 0.53 | COMA−M | 24 | |||||
25 | keasar−server | 70.70 | 64.40 | 72.77 | 68.17 | 63.51 | 63.14 | 88.05 | 83.12 | 85.08 | 0.14 | 0.23 | 0.21 | 0.48 | 0.48 | 0.43 | 71.02 | 64.40 | 74.50 | 75.62 | 70.96 | 72.64 | 89.15 | 85.90 | 87.41 | 0.25 | 0.12 | 0.18 | 0.30 | 0.41 | 0.50 | 0.47 | keasar−server | 25 | |||||
26 | YASARA | 70.55 | 62.89 | 66.64 | 81.52 | 78.62 | 78.37 | 72.96 | 67.72 | 57.34 | 0.13 | 0.08 | 1.14 | 1.30 | 1.22 | 70.55 | 63.05 | 66.64 | 81.52 | 78.62 | 78.37 | 72.96 | 67.72 | 57.34 | 0.80 | 0.97 | 0.90 | YASARA | 26 | ||||||||||
27 | HHpred2 | 69.92 | 62.87 | 73.82 | 69.10 | 64.96 | 64.08 | 89.78 | 84.49 | 86.78 | 0.06 | 0.08 | 0.30 | 0.10 | 0.63 | 0.59 | 0.56 | 69.92 | 62.87 | 73.82 | 69.10 | 64.96 | 64.08 | 89.78 | 84.49 | 86.78 | 0.19 | 0.47 | 0.38 | 0.42 | HHpred2 | 27 | |||||||
28 | PSI | 69.84 | 62.45 | 71.14 | 75.00 | 70.24 | 72.20 | 77.52 | 68.08 | 73.61 | 0.06 | 0.04 | 0.08 | 0.48 | 0.56 | 0.62 | 70.62 | 65.21 | 72.70 | 75.00 | 70.24 | 72.20 | 88.99 | 86.06 | 86.73 | 0.09 | 0.09 | 0.05 | 0.10 | 0.26 | 0.40 | 0.52 | 0.42 | PSI | 28 | ||||
29 | HHpred4 | 69.69 | 63.78 | 73.94 | 68.17 | 62.06 | 63.42 | 89.47 | 82.70 | 88.04 | 0.04 | 0.17 | 0.31 | 0.61 | 0.45 | 0.66 | 69.69 | 63.78 | 73.94 | 68.17 | 62.06 | 63.42 | 89.47 | 82.70 | 88.04 | 0.20 | 0.44 | 0.22 | 0.52 | HHpred4 | 29 | ||||||||
30 | HHpred5 | 69.69 | 63.78 | 73.94 | 68.17 | 62.06 | 63.42 | 89.47 | 82.70 | 88.04 | 0.04 | 0.17 | 0.31 | 0.61 | 0.45 | 0.66 | 69.69 | 63.78 | 73.94 | 68.17 | 62.06 | 63.42 | 89.47 | 82.70 | 88.04 | 0.20 | 0.44 | 0.22 | 0.52 | HHpred5 | 30 | ||||||||
31 | COMA | 69.61 | 63.93 | 73.52 | 67.39 | 62.11 | 63.35 | 88.84 | 80.40 | 87.40 | 0.03 | 0.18 | 0.28 | 0.55 | 0.26 | 0.61 | 72.42 | 65.65 | 76.16 | 80.90 | 76.76 | 77.16 | 88.84 | 85.33 | 88.12 | 0.13 | 0.14 | 0.40 | 0.73 | 0.78 | 0.77 | 0.38 | 0.45 | 0.53 | COMA | 31 | |||
32 | GeneSilicoMetaServer | 69.61 | 62.68 | 70.21 | 63.98 | 57.87 | 61.97 | 85.85 | 81.66 | 81.56 | 0.03 | 0.06 | 0.01 | 0.28 | 0.36 | 0.17 | 72.50 | 63.54 | 73.66 | 66.77 | 61.39 | 64.03 | 89.62 | 85.53 | 86.94 | 0.14 | 0.17 | 0.46 | 0.47 | 0.44 | GeneSilicoMetaServer | 32 | |||||||
33 | FFASstandard | 69.45 | 60.29 | 72.66 | 66.15 | 54.45 | 62.21 | 87.89 | 83.81 | 86.38 | 0.02 | 0.21 | 0.47 | 0.53 | 0.53 | 69.45 | 62.42 | 72.66 | 75.78 | 71.07 | 72.31 | 87.89 | 83.81 | 86.38 | 0.09 | 0.14 | 0.19 | 0.27 | 0.29 | 0.32 | 0.39 | FFASstandard | 33 | ||||||
34 | FFASflextemplate | 69.45 | 60.29 | 72.66 | 66.15 | 54.45 | 62.21 | 87.89 | 83.81 | 86.38 | 0.02 | 0.21 | 0.47 | 0.53 | 0.53 | 70.78 | 64.82 | 72.66 | 66.15 | 61.18 | 62.21 | 87.89 | 83.81 | 86.38 | 0.04 | 0.09 | 0.29 | 0.32 | 0.39 | FFASflextemplate | 34 | ||||||||
35 | Frankenstein | 69.30 | 61.48 | 68.43 | 65.22 | 56.73 | 60.75 | 78.62 | 69.08 | 78.45 | 0.00 | 71.09 | 64.27 | 73.40 | 80.12 | 75.88 | 76.07 | 79.56 | 72.22 | 78.45 | 0.15 | 0.64 | 0.69 | 0.66 | Frankenstein | 35 | |||||||||||||
36 | SAM−T06−server | 68.83 | 59.38 | 71.43 | 75.62 | 69.20 | 70.82 | 78.46 | 74.69 | 76.58 | 0.11 | 0.55 | 0.47 | 0.49 | 68.83 | 60.96 | 71.43 | 77.64 | 70.60 | 73.39 | 81.76 | 76.42 | 76.58 | 0.36 | 0.14 | 0.38 | SAM−T06−server | 36 | |||||||||||
37 | Pcons_local | 68.67 | 59.35 | 70.52 | 73.91 | 66.77 | 71.07 | 77.20 | 72.59 | 73.63 | 0.03 | 0.37 | 0.26 | 0.51 | 70.86 | 64.14 | 71.40 | 78.73 | 76.24 | 72.67 | 78.14 | 74.06 | 73.70 | 0.48 | 0.72 | 0.30 | Pcons_local | 37 | |||||||||||
38 | FAMSD | 68.67 | 58.83 | 71.07 | 65.06 | 58.02 | 60.48 | 88.68 | 85.74 | 85.10 | 0.08 | 0.54 | 0.69 | 0.44 | 69.22 | 63.15 | 71.14 | 76.55 | 72.41 | 71.00 | 88.68 | 85.74 | 85.10 | 0.23 | 0.33 | 0.13 | 0.37 | 0.49 | 0.29 | FAMSD | 38 | ||||||||
39 | BAKER−ROBETTA | 68.59 | 61.56 | 72.91 | 65.84 | 60.66 | 64.92 | 85.69 | 79.51 | 83.98 | 0.23 | 0.27 | 0.19 | 0.35 | 70.08 | 63.12 | 74.53 | 68.01 | 62.06 | 67.70 | 87.58 | 81.34 | 87.16 | 0.25 | 0.26 | 0.11 | 0.45 | BAKER−ROBETTA | 39 | ||||||||||
40 | Pcons_dot_net | 68.52 | 60.88 | 73.65 | 66.30 | 59.47 | 62.32 | 89.15 | 86.53 | 88.67 | 0.29 | 0.58 | 0.75 | 0.71 | 70.47 | 64.77 | 73.65 | 68.32 | 59.47 | 62.32 | 90.25 | 86.53 | 88.67 | 0.03 | 0.17 | 0.52 | 0.56 | 0.57 | Pcons_dot_net | 40 | |||||||||
41 | Pcons_multi | 68.52 | 60.88 | 73.65 | 66.30 | 59.47 | 62.32 | 89.15 | 86.53 | 88.67 | 0.29 | 0.58 | 0.75 | 0.71 | 77.03 | 67.97 | 78.19 | 73.91 | 64.08 | 68.12 | 94.03 | 87.32 | 90.85 | 0.68 | 0.41 | 0.58 | 0.89 | 0.63 | 0.75 | Pcons_multi | 41 | ||||||||
42 | FUGUE_KM | 68.28 | 62.45 | 69.06 | 65.22 | 58.59 | 58.36 | 87.11 | 84.07 | 83.43 | 0.04 | 0.40 | 0.56 | 0.31 | 68.28 | 62.45 | 69.06 | 65.22 | 58.59 | 58.36 | 87.11 | 84.07 | 83.43 | 0.21 | 0.34 | 0.15 | FUGUE_KM | 42 | |||||||||||
43 | nFOLD3 | 68.28 | 62.40 | 68.78 | 65.22 | 54.35 | 57.69 | 87.11 | 84.28 | 83.57 | 0.04 | 0.40 | 0.57 | 0.32 | 70.00 | 62.50 | 70.00 | 77.95 | 72.77 | 73.88 | 87.11 | 84.28 | 83.57 | 0.39 | 0.36 | 0.43 | 0.21 | 0.36 | 0.17 | nFOLD3 | 43 | ||||||||
44 | circle | 68.12 | 60.23 | 72.02 | 64.60 | 58.90 | 63.18 | 88.21 | 84.96 | 84.12 | 0.15 | 0.49 | 0.63 | 0.36 | 68.52 | 60.70 | 72.02 | 65.37 | 59.52 | 63.18 | 88.36 | 84.96 | 84.88 | 0.03 | 0.33 | 0.42 | 0.27 | circle | 44 | ||||||||||
45 | mGenTHREADER | 68.05 | 61.80 | 67.41 | 64.44 | 58.54 | 57.08 | 87.58 | 83.07 | 81.23 | 0.44 | 0.48 | 0.14 | 68.05 | 61.80 | 67.41 | 64.44 | 58.54 | 57.08 | 87.58 | 83.07 | 81.23 | 0.26 | 0.26 | mGenTHREADER | 45 | |||||||||||||
46 | panther_server | 67.81 | 59.79 | 61.09 | 64.91 | 53.93 | 54.85 | 75.63 | 63.89 | 69.62 | 69.92 | 62.27 | 68.38 | 78.26 | 71.95 | 71.28 | 86.48 | 81.34 | 83.76 | 0.43 | 0.28 | 0.16 | 0.15 | 0.11 | 0.18 | panther_server | 46 | ||||||||||||
47 | Phyre2 | 67.58 | 60.76 | 73.95 | 66.92 | 60.20 | 64.71 | 84.75 | 78.25 | 86.61 | 0.31 | 0.19 | 0.09 | 0.55 | 71.33 | 63.93 | 74.36 | 80.28 | 73.86 | 76.76 | 84.75 | 78.25 | 86.61 | 0.24 | 0.66 | 0.48 | 0.73 | 0.41 | Phyre2 | 47 | |||||||||
48 | Poing | 67.19 | 60.21 | 76.01 | 67.24 | 58.95 | 68.66 | 84.75 | 78.25 | 86.61 | 0.48 | 0.28 | 0.19 | 0.09 | 0.55 | 71.48 | 63.93 | 76.01 | 79.81 | 73.39 | 76.86 | 84.75 | 78.25 | 86.61 | 0.02 | 0.38 | 0.60 | 0.43 | 0.74 | 0.41 | Poing | 48 | |||||||
49 | Phragment | 67.11 | 60.13 | 75.53 | 66.46 | 58.75 | 67.73 | 84.75 | 78.25 | 86.61 | 0.44 | 0.19 | 0.19 | 0.09 | 0.55 | 71.41 | 63.93 | 75.53 | 80.28 | 73.86 | 76.94 | 84.75 | 78.25 | 86.61 | 0.01 | 0.34 | 0.66 | 0.48 | 0.75 | 0.41 | Phragment | 49 | |||||||
50 | FALCON_CONSENSUS | 67.11 | 59.92 | 71.86 | 65.37 | 55.23 | 61.06 | 88.05 | 85.85 | 86.98 | 0.14 | 0.48 | 0.70 | 0.58 | 71.17 | 66.02 | 74.14 | 77.48 | 73.86 | 72.58 | 90.41 | 85.85 | 87.46 | 0.18 | 0.22 | 0.34 | 0.48 | 0.29 | 0.54 | 0.50 | 0.48 | FALCON_CONSENSUS | 50 | ||||||
51 | FALCON | 67.11 | 59.92 | 71.86 | 65.37 | 55.23 | 61.06 | 88.05 | 85.85 | 86.98 | 0.14 | 0.48 | 0.70 | 0.58 | 71.17 | 66.02 | 74.14 | 77.48 | 73.86 | 72.58 | 90.41 | 85.85 | 87.46 | 0.18 | 0.22 | 0.34 | 0.48 | 0.29 | 0.54 | 0.50 | 0.48 | FALCON | 51 | ||||||
52 | FFASsuboptimal | 66.95 | 56.88 | 70.79 | 66.15 | 56.16 | 59.60 | 87.89 | 83.91 | 85.33 | 0.06 | 0.47 | 0.54 | 0.45 | 68.28 | 62.94 | 71.37 | 66.15 | 56.78 | 61.11 | 87.89 | 85.38 | 85.89 | 0.29 | 0.46 | 0.35 | FFASsuboptimal | 52 | |||||||||||
53 | SAM−T02−server | 65.62 | 60.62 | 58.87 | 58.08 | 55.18 | 42.21 | 85.85 | 81.55 | 79.75 | 0.28 | 0.36 | 0.03 | 67.73 | 60.62 | 58.87 | 60.71 | 56.78 | 49.19 | 85.85 | 81.55 | 79.75 | 0.09 | 0.12 | SAM−T02−server | 53 | |||||||||||||
54 | Pushchino | 65.31 | 59.63 | 60.55 | 58.23 | 49.74 | 46.30 | 83.65 | 80.19 | 80.03 | 0.09 | 0.25 | 0.05 | 65.31 | 59.63 | 60.55 | 58.23 | 49.74 | 46.30 | 83.65 | 80.19 | 80.03 | 0.01 | Pushchino | 54 | ||||||||||||||
55 | Distill | 62.03 | 56.62 | 57.48 | 63.51 | 51.66 | 61.46 | 65.41 | 60.80 | 57.11 | 62.42 | 56.62 | 58.45 | 68.63 | 62.84 | 64.05 | 65.41 | 60.80 | 57.11 | Distill | 55 | ||||||||||||||||||
56 | CpHModels | 61.02 | 52.60 | 57.26 | 52.17 | 48.34 | 43.07 | 83.65 | 74.84 | 75.84 | 0.09 | 61.02 | 52.60 | 57.26 | 52.17 | 48.34 | 43.07 | 83.65 | 74.84 | 75.84 | CpHModels | 56 | |||||||||||||||||
57 | 3Dpro | 56.95 | 49.19 | 49.58 | 63.20 | 52.33 | 59.71 | 55.35 | 45.91 | 44.30 | 57.19 | 49.19 | 49.65 | 63.51 | 53.67 | 59.71 | 55.35 | 46.17 | 44.30 | 3Dpro | 57 | ||||||||||||||||||
58 | MUFOLD−Server | 53.91 | 45.10 | 45.02 | 64.29 | 57.87 | 56.27 | 53.62 | 44.92 | 39.23 | 54.22 | 45.94 | 45.75 | 64.29 | 57.87 | 56.80 | 54.87 | 49.00 | 41.07 | MUFOLD−Server | 58 | ||||||||||||||||||
59 | ACOMPMOD | 52.66 | 45.16 | 48.74 | 58.08 | 53.52 | 52.36 | 52.67 | 41.25 | 47.73 | 52.66 | 45.16 | 48.74 | 58.08 | 53.52 | 52.36 | 52.67 | 41.25 | 47.73 | ACOMPMOD | 59 | ||||||||||||||||||
60 | LOOPP_Server | 38.36 | 36.07 | 21.24 | 1.86 | 1.86 | 75.63 | 71.02 | 75.41 | 68.98 | 61.98 | 72.21 | 76.86 | 72.31 | 73.15 | 90.25 | 85.74 | 85.69 | 0.05 | 0.27 | 0.32 | 0.35 | 0.52 | 0.49 | 0.34 | LOOPP_Server | 60 | ||||||||||||
61 | rehtnap | 34.06 | 29.01 | 27.79 | 33.54 | 27.74 | 32.61 | 44.97 | 37.53 | 30.34 | 47.66 | 41.72 | 30.34 | 55.90 | 50.10 | 39.46 | 44.97 | 37.53 | 30.49 | rehtnap | 61 | ||||||||||||||||||
62 | 3D−JIGSAW_AEP | 30.70 | 23.33 | 27.83 | 51.71 | 42.55 | 48.99 | 15.72 | 12.89 | 15.99 | 30.70 | 24.22 | 27.83 | 51.71 | 42.55 | 48.99 | 15.72 | 13.00 | 16.05 | 3D−JIGSAW_AEP | 62 | ||||||||||||||||||
63 | 3D−JIGSAW_V3 | 26.64 | 22.47 | 30.76 | 43.79 | 35.40 | 44.97 | 26.89 | 23.11 | 24.93 | 26.64 | 22.47 | 30.76 | 43.79 | 35.45 | 44.97 | 26.89 | 23.11 | 24.93 | 3D−JIGSAW_V3 | 63 | ||||||||||||||||||
64 | FOLDpro | 22.81 | 17.79 | 21.22 | 43.79 | 35.09 | 40.71 | 12.74 | 9.70 | 11.55 | 25.16 | 19.66 | 24.75 | 48.76 | 38.82 | 47.06 | 16.82 | 15.46 | 14.20 | FOLDpro | 64 | ||||||||||||||||||
65 | mariner1 | 22.66 | 19.53 | 7.87 | 1.86 | 1.86 | 44.50 | 38.00 | 47.62 | 40.16 | 36.25 | 23.76 | 37.27 | 31.26 | 38.32 | 79.09 | 71.23 | 77.77 | mariner1 | 65 | |||||||||||||||||||
66 | OLGAFS | 14.38 | 10.26 | 2.55 | 26.09 | 20.81 | 13.00 | 10.38 | 6.92 | 3.54 | 14.77 | 12.40 | 2.55 | 26.71 | 21.95 | 13.01 | 10.38 | 7.18 | 3.64 | OLGAFS | 66 | ||||||||||||||||||
67 | MUFOLD−MD | 10.55 | 7.84 | 24.97 | 16.30 | 14.44 | 29.31 | 19.50 | 14.05 | 31.36 | 12.19 | 9.63 | 28.57 | 20.03 | 17.34 | 34.28 | 19.50 | 16.82 | 35.11 | MUFOLD−MD | 67 | ||||||||||||||||||
68 | RBO−Proteus | 10.31 | 8.59 | 29.61 | 20.50 | 17.08 | 37.95 | 16.20 | 13.05 | 31.62 | 12.27 | 10.60 | 29.70 | 22.83 | 18.12 | 38.23 | 17.77 | 15.78 | 32.15 | RBO−Proteus | 68 | ||||||||||||||||||
69 | RANDOM | 8.85 | 7.15 | 8.85 | 16.53 | 13.94 | 16.53 | 13.17 | 11.52 | 13.17 | 8.85 | 7.15 | 8.85 | 16.53 | 13.94 | 16.53 | 13.17 | 11.52 | 13.17 | RANDOM | 69 | ||||||||||||||||||
70 | schenk−torda−server | 6.02 | 5.03 | 5.67 | 11.18 | 9.68 | 13.03 | 11.63 | 9.43 | 9.03 | 7.11 | 6.28 | 7.12 | 12.58 | 10.97 | 14.00 | 13.21 | 11.43 | 12.24 | schenk−torda−server | 70 | ||||||||||||||||||
71 | BHAGEERATH | BHAGEERATH | 71 | ||||||||||||||||||||||||||||||||||||
72 | huber−torda−server | huber−torda−server | 72 | ||||||||||||||||||||||||||||||||||||
73 | mahmood−torda−server | mahmood−torda−server | 73 | ||||||||||||||||||||||||||||||||||||
74 | test_http_server_01 | test_http_server_01 | 74 |