T0473

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T0473

protein A3DK08 from Clostridium thermocellum

Target type: Human/Server

Target sequence:

>T0473 CmR9, Clostridium thermocellum, 68 residues
MKITKDMIIADVLQMDRGTAPIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKELNEYFEKKEV

Structure:
Method: NMR
Determined by: NESG
PDB ID: 2k53

PyMOL of 2k53

Domains:  PyMOL of domains

Single domain protein. Unfortunately, the most interesting region (differing from the template) is conformationally flexible in the middle (green in the image above) of this NMR structure, and some residues from it were removed from NMR models for evaluation of predictions.

Structure classification:

An unusual helix-turn-helix (HTH) containing protein. The last two α-helices (yellow and orange-red) form the HTH motif, which is readily recognizable by almost perpendicular orientation of the two helices and a long extended "turn" between them that positions the N-terminus of the second helix close to the middle of the first helix. The rest of the structure is unique and shared only with the closest homologs: T0469 and the only full-chain template 2fi0. This N-terminal segment is structured as 3 helices and completes the HTH core in a manner similar to how a single N-terminal helix packs agaist HTH in a classic three-helical bundle fold.

We used COMPASS to find homologs of T0473. The first COMPASS hit in the SCOP database is to a typical HTH three-helical bundle. Reasonably small E-value of ~0.03 is almost good enough to validate this match.

Subject = d1hcra_   a.4.1.2  HIN recombinase (DNA-binding domain)
length=52 filtered_length=51 Neff=12.765 Smith-Waterman score = 48 Evalue = 2.80e-02
QUERY         21     PIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKELNEYFEKKE  67
CONSENSUS_1   21     EVFLKYGLDCCGCPIAGFETLEDACREHGIDLDELLEELNEAIAEKD  67
                     +++ + ++  +   +A+ E++++++RE G+ ++ L + L++  ++++
CONSENSUS_2   4      PKLTPEQIAEARRLLAAGESVAEIARELGVSRSTLYRYLPASEKRTA  50
d1hcra_       4      RAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKR  50

All top COMPASS hits are HTH-containing proteins with different SCOP folds. Additionally, their E-values are quite low, so there is little doubt about evolutionary origin of T0473 and its homology to HTH domains. The 49-Gly-Ile-Asp-51 in T0473 is a very typical sequence for an HTH turn, and Ala44, four residues before Gly49, is a conserved small residue to make room for the second HTH helix packing. However only the HTH part of the domain is homologous, as the way it is completed is quite different among homologs:

CASP category:

Comparative modeling: medium. Closest template detectable by HHpred, but contains some structural differences.

Closest templates:

The only full-length template was 2fi0, which is another structure of a hypothetical protein determined by a structural genomics center.

T0473    ----MKITKDMIIADVLQMDRGTAPIFINNGMHCLGCP-----SSMGESIEDACAVHGIDADKLVKELNEYFEKKEV--
2fi0_A   VVMDNIIDVSIPVAEVVDKHPEVLEILVELGFKPLANPLMRNTVGRKVSLKQGSKLAGTPMDKIVRTLEANGYEVIGLD

Both molecules are shown below with the most similar HTH region (yellow-red) at the back and more variable N-terminal helices in front. The first two helices (blue-cyan and cyan-green) have very similar orientations in both molecules, however, the differences are pronounced in the green-yellow region, where T0473 has a 6-residue deletion eliminating the fourth helix of 2fi0. Another interesting difference is that 2fi0 contains a C-terminal segment (red) that forms β-strand pairing with the N-terminial segment (blue). Thus a two-stranded β-sheet is present in 2fi0. However, T0473 lacks the C-terminal extension. Nevertheless, the N-terminal region (blue) still holds the extended conformation even without H-bond pairing, at least close to the first helix.

Target sequence - PDB file inconsistencies:

NMR models contain two C-terminal residues 69-LE-70, not present in the target sequence (coming from His-tag).

T0473    2k53.pdb    T0473.pdb    PyMOL    PyMOL of domains   

T0473    1 MKITKDMIIADVLQMDRGTAPIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKELNEYFEKKEV-- 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~
2k53A    1 MKITKDMIIADVLQMDRGTAPIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKELNEYFEKKEVLE 70

Single domain protein: target 1-68 ; pdb 1-68

Sequence classification:

COG2846 in COG database, which is predicted to be "Regulator of cell morphogenesis and NO signaling". Below is PROMALS3D alignment of several most distant homologs detectable by PSI-BLAST. This alignment was not edited manually and may have errors.

Conservation:      9        5        7     6                      5                 7                                                   
T0473            ----MKITKDMIIADVLQMDRGTAPIFINNGMHCLGCP-----SSMGESIEDACAVHGIDADKLVKELNEYFEKKEV-------------------------------------     
T0469         1  --MTQKFTKDMTFAQALQTHPGVAGVLRSYNLGCIGCM-----GAQNESLEQGANAHGLNVEDILRDLNALA------------------------------------------   65
2fi0_chainA   1  VVMDNIIDVSIPVAEVVDKHPEVLEILVELGFKPLANPLMRNTVGRKVSLKQGSKLAGTPMDKIVRTLEANGYEVIGLD-----------------------------------   79
gi_81428069   1  --MAKQIKLSQTVYELVTAYPEIVPILVSIGLDGVTNPALLNTAGRFMTLPKGAQMKQIPLSQIVATLTENDFEVIADD-----------------------------------   77
gi_109645979  1  --MA-LITKDMTVGQVLRSYPQTVQTFLELGMHCLGCPS-----STMESIEGAALTHGKKPDELVEKLNKVI----AAN-----------------------------------   67
gi_95930439   1  ----MLIQPQMTIKQIIDTWPQTLDVFTANGFEQFAQPEMIDRVGRFLKLESALSQKGYDCAAFIALLQERI----DAADQQADI-------TLVE------------------   81
gi_146300169  1  --M--ENLKNKTIGSFVAQDYRTAAVFSKYRIDF-CCK-------GNRTVDEVCEKQNIDADVLLQNIHEVI----QSENNGSIDFNSWPLDLLADYIEKTHHRYVEDKTHTLL   98
gi_163939963  1  --MKHTFTETSIIGEIVTQFPKASDLFKSYRIDF-CCG-------GNRPLIDAINERNLSATEVITELNTLY-NNTKLLNESEIDWKNASYRELIDYVINKHHR----------   93
Consensus_aa:    ..M..bhp.sbhl.phlpp@Pphh.lh.ph.hc..ts...........sl.pthp.pshshs.ll.pLp.............................................     
Consensus_ss:                hhhhhhh   hhhhhhh                    hhhhhhhh   hhhhhhhhhhhh                                               

Comments:

This protein is a close homolog of T0469:

T0473 --MKITKDMIIADVLQMDRGTAPIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKELNEYFEKKEV
T0469 MTQKFTKDMTFAQALQTHPGVAGVLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILRDLNALA-----

Curiously, many sequences of this family contain conserved Cysteine residues in the most varible region of the molecule, and some also contain Histidine in the HTH turn. These residues are highlighted in magenta in the above family alignment and are shown on the structure of T0473. Due to their conservation, it was hypothesized that they might be part of a metal or some other ligand - binding site.

Server predictions:

T0473:pdb 1-68:seq 1-68:CM_medium;   alignment

click on a score in the table below to display the model in PyMOL

# GROUP ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ ↓ GROUP #
T0473 T0473 T0473 T0473
First score First Z-score Best score Best Z-score
1 mufold 81.25 77.33 80.82 1.32 1.73 1.57 82.72 79.78 80.82 1.42 1.89 1.41 mufold 1
2 KudlatyPredHuman 79.41 70.59 79.18 1.17 1.16 1.39 79.41 72.18 80.68 1.11 1.18 1.39 KudlatyPredHuman 2
3 METATASSER 79.41 69.61 77.58 1.17 1.08 1.21 79.41 71.32 77.58 1.11 1.09 1.03 METATASSER 3
4 MULTICOM 78.68 72.06 79.38 1.11 1.29 1.41 78.68 72.06 79.70 1.04 1.16 1.28 MULTICOM 4
5 DBAKER 78.68 69.36 80.46 1.11 1.06 1.53 78.68 69.36 80.46 1.04 0.91 1.37 DBAKER 5
6 Zhang−Server 77.57 69.73 78.26 1.02 1.09 1.28 79.04 71.94 78.81 1.08 1.15 1.17 Zhang−Server 6
7 GeneSilico 77.57 69.73 78.26 1.02 1.09 1.28 77.57 69.73 78.26 0.94 0.94 1.11 GeneSilico 7
8 McGuffin 77.57 69.73 78.26 1.02 1.09 1.28 82.35 79.41 78.60 1.39 1.86 1.15 McGuffin 8
9 FEIG 77.21 70.59 69.16 0.99 1.16 0.26 77.21 70.59 72.28 0.91 1.03 0.40 FEIG 9
10 Zhang 76.84 71.69 78.02 0.96 1.25 1.26 78.31 72.55 78.55 1.01 1.21 1.14 Zhang 10
11 TASSER 75.73 67.65 77.76 0.87 0.91 1.23 75.73 67.65 77.76 0.77 0.75 1.05 TASSER 11
12 AMU−Biology 74.63 70.47 69.44 0.78 1.15 0.29 75.37 70.47 74.49 0.74 1.01 0.66 AMU−Biology 12
13 Sternberg 73.90 66.54 74.01 0.72 0.82 0.80 73.90 66.54 74.01 0.60 0.64 0.60 Sternberg 13
14 Phyre_de_novo 73.90 66.54 74.02 0.72 0.82 0.81 73.90 66.54 74.05 0.60 0.64 0.61 Phyre_de_novo 14
15 SAM−T08−human 73.90 63.85 77.74 0.72 0.59 1.23 73.90 66.91 79.06 0.60 0.68 1.20 SAM−T08−human 15
16 StruPPi 73.16 65.81 69.98 0.66 0.75 0.35 73.16 65.81 69.98 0.53 0.57 0.12 StruPPi 16
17 3DShotMQ 73.16 65.56 75.94 0.66 0.73 1.02 73.16 65.56 75.94 0.53 0.55 0.83 3DShotMQ 17
18 Bates_BMM 73.16 59.19 76.31 0.66 0.19 1.06 79.41 74.27 79.86 1.11 1.37 1.30 Bates_BMM 18
19 3D−JIGSAW_V3 72.79 62.99 77.32 0.63 0.51 1.18 73.90 68.63 77.32 0.60 0.84 0.99 3D−JIGSAW_V3 19
20 IBT_LT 72.79 62.26 73.88 0.63 0.45 0.79 72.79 62.26 73.88 0.49 0.24 0.59 IBT_LT 20
21 LevittGroup 72.43 68.02 69.39 0.60 0.94 0.28 73.53 68.02 72.04 0.56 0.78 0.37 LevittGroup 21
22 BAKER−ROBETTA 72.43 60.91 72.27 0.60 0.34 0.61 74.27 65.93 75.62 0.63 0.58 0.79 BAKER−ROBETTA 22
23 GS−KudlatyPred 72.43 60.91 72.27 0.60 0.34 0.61 72.43 60.91 72.27 0.46 0.11 0.39 GS−KudlatyPred 23
24 Poing 72.06 65.44 71.92 0.57 0.72 0.57 72.06 65.44 71.92 0.43 0.54 0.35 Poing 24
25 FAMS−multi 72.06 64.71 71.42 0.57 0.66 0.51 72.43 64.71 71.66 0.46 0.47 0.32 FAMS−multi 25
26 MUSTER 72.06 64.71 69.36 0.57 0.66 0.28 72.06 64.71 69.36 0.43 0.47 0.05 MUSTER 26
27 SAM−T08−server 72.06 64.46 77.93 0.57 0.64 1.25 74.27 66.42 77.93 0.63 0.63 1.07 SAM−T08−server 27
28 BioSerf 72.06 58.82 70.80 0.57 0.16 0.44 72.06 58.82 70.80 0.43 -0.09 0.22 BioSerf 28
29 ACOMPMOD 72.06 56.37 72.56 0.57 -0.05 0.64 72.06 56.37 72.56 0.43 -0.32 0.43 ACOMPMOD 29
30 LEE 72.06 53.68 75.59 0.57 -0.28 0.98 72.79 62.38 75.59 0.49 0.25 0.79 LEE 30
31 3D−JIGSAW_AEP 71.69 68.50 70.36 0.54 0.98 0.39 73.16 69.00 72.54 0.53 0.87 0.43 3D−JIGSAW_AEP 31
32 NirBenTal 71.69 65.32 70.06 0.54 0.71 0.36 71.69 65.32 70.06 0.39 0.53 0.13 NirBenTal 32
33 fams−ace2 71.69 64.09 77.66 0.54 0.61 1.22 71.69 64.09 77.66 0.39 0.41 1.04 fams−ace2 33
34 pro−sp3−TASSER 71.69 63.85 72.92 0.54 0.59 0.68 82.35 79.41 77.66 1.39 1.86 1.04 pro−sp3−TASSER 34
35 EB_AMU_Physics 71.69 62.62 71.97 0.54 0.48 0.57 71.69 62.62 71.97 0.39 0.27 0.36 EB_AMU_Physics 35
36 tripos_08 71.32 65.93 65.42 0.51 0.76 -0.17 71.32 65.93 65.42 0.36 0.58 -0.42 tripos_08 36
37 Phragment 71.32 65.20 71.09 0.51 0.70 0.47 71.32 65.20 71.09 0.36 0.52 0.25 Phragment 37
38 Zico 71.32 64.71 72.80 0.51 0.66 0.67 77.57 69.48 78.68 0.94 0.92 1.16 Zico 38
39 ZicoFullSTP 71.32 64.71 72.80 0.51 0.66 0.67 77.57 69.48 78.68 0.94 0.92 1.16 ZicoFullSTP 39
40 ZicoFullSTPFullData 71.32 64.71 72.80 0.51 0.66 0.67 72.79 64.71 78.68 0.49 0.47 1.16 ZicoFullSTPFullData 40
41 keasar−server 71.32 62.74 70.65 0.51 0.49 0.42 72.43 63.85 72.36 0.46 0.39 0.41 keasar−server 41
42 Phyre2 70.96 63.36 71.61 0.48 0.55 0.53 70.96 63.36 71.61 0.32 0.34 0.32 Phyre2 42
43 Hao_Kihara 70.96 63.11 69.42 0.48 0.53 0.29 70.96 63.11 69.42 0.32 0.32 0.06 Hao_Kihara 43
44 MidwayFolding 70.96 63.11 71.78 0.48 0.53 0.55 70.96 63.11 71.78 0.32 0.32 0.34 MidwayFolding 44
45 RAPTOR 70.96 63.11 71.78 0.48 0.53 0.55 71.69 63.11 72.68 0.39 0.32 0.44 RAPTOR 45
46 PS2−server 70.96 62.38 70.21 0.48 0.46 0.37 70.96 62.38 70.21 0.32 0.25 0.15 PS2−server 46
47 PS2−manual 70.96 62.38 70.21 0.48 0.46 0.37 70.96 62.38 70.21 0.32 0.25 0.15 PS2−manual 47
48 Bilab−UT 70.96 60.66 71.84 0.48 0.32 0.56 72.43 62.74 71.84 0.46 0.28 0.34 Bilab−UT 48
49 Kolinski 70.59 62.01 74.00 0.45 0.43 0.80 70.96 63.36 75.08 0.32 0.34 0.73 Kolinski 49
50 COMA−M 70.59 61.52 68.61 0.45 0.39 0.19 70.59 61.52 68.61 0.29 0.17 -0.04 COMA−M 50
51 COMA 70.59 61.52 68.61 0.45 0.39 0.19 70.59 61.52 68.61 0.29 0.17 -0.04 COMA 51
52 Jones−UCL 70.59 60.29 70.32 0.45 0.29 0.39 70.59 60.29 70.32 0.29 0.05 0.16 Jones−UCL 52
53 nFOLD3 70.59 59.80 67.93 0.45 0.24 0.12 70.96 64.22 68.06 0.32 0.42 -0.11 nFOLD3 53
54 A−TASSER 70.59 58.33 71.15 0.45 0.12 0.48 78.68 75.49 76.00 1.04 1.49 0.84 A−TASSER 54
55 fleil 70.22 63.85 68.85 0.42 0.59 0.22 72.06 64.46 71.52 0.43 0.45 0.31 fleil 55
56 Chicken_George 70.22 63.36 72.51 0.42 0.55 0.63 74.63 63.36 78.65 0.67 0.34 1.15 Chicken_George 56
57 MUProt 70.22 61.89 70.31 0.42 0.42 0.39 70.59 61.89 70.52 0.29 0.20 0.19 MUProt 57
58 MULTICOM−CMFR 70.22 61.64 70.13 0.42 0.40 0.37 72.43 65.56 71.51 0.46 0.55 0.30 MULTICOM−CMFR 58
59 3DShot2 70.22 61.40 68.45 0.42 0.38 0.18 70.22 61.40 68.45 0.25 0.16 -0.06 3DShot2 59
60 HHpred4 70.22 61.15 70.24 0.42 0.36 0.38 70.22 61.15 70.24 0.25 0.13 0.15 HHpred4 60
61 HHpred5 70.22 61.15 70.24 0.42 0.36 0.38 70.22 61.15 70.24 0.25 0.13 0.15 HHpred5 61
62 MULTICOM−REFINE 70.22 60.66 70.05 0.42 0.32 0.36 70.22 61.89 70.48 0.25 0.20 0.18 MULTICOM−REFINE 62
63 MULTICOM−RANK 70.22 60.42 70.17 0.42 0.30 0.37 72.06 63.97 70.66 0.43 0.40 0.20 MULTICOM−RANK 63
64 3DShot1 69.85 61.52 72.64 0.39 0.39 0.65 69.85 61.52 72.64 0.22 0.17 0.44 3DShot1 64
65 MULTICOM−CLUSTER 69.85 61.03 70.26 0.39 0.35 0.38 71.32 63.97 70.26 0.36 0.40 0.16 MULTICOM−CLUSTER 65
66 PRI−Yang−KiharA 69.85 58.58 70.15 0.39 0.14 0.37 69.85 58.58 70.15 0.22 -0.11 0.14 PRI−Yang−KiharA 66
67 FAMSD 69.85 54.90 69.30 0.39 -0.17 0.27 69.85 62.38 69.30 0.22 0.25 0.04 FAMSD 67
68 SAM−T06−server 69.48 61.89 72.26 0.36 0.42 0.61 69.48 62.74 72.26 0.19 0.28 0.39 SAM−T06−server 68
69 pipe_int 69.48 60.66 66.88 0.36 0.32 -0.00 69.48 60.66 66.88 0.19 0.09 -0.25 pipe_int 69
70 Elofsson 69.48 60.66 70.29 0.36 0.32 0.38 70.22 60.91 70.32 0.25 0.11 0.16 Elofsson 70
71 HHpred2 69.48 60.66 69.66 0.36 0.32 0.31 69.48 60.66 69.66 0.19 0.09 0.08 HHpred2 71
72 SHORTLE 69.48 54.53 75.43 0.36 -0.20 0.96 69.48 54.53 75.43 0.19 -0.49 0.77 SHORTLE 72
73 FFASstandard 69.12 62.50 67.72 0.33 0.47 0.09 69.12 63.97 67.72 0.15 0.40 -0.15 FFASstandard 73
74 FUGUE_KM 68.75 62.62 66.70 0.30 0.48 -0.02 68.75 62.62 66.70 0.12 0.27 -0.27 FUGUE_KM 74
75 ABIpro 68.75 60.17 67.42 0.30 0.28 0.06 76.47 71.08 77.58 0.84 1.07 1.03 ABIpro 75
76 FFASsuboptimal 68.38 54.90 67.66 0.27 -0.17 0.09 71.69 62.62 70.62 0.39 0.27 0.20 FFASsuboptimal 76
77 TJ_Jiang 68.02 59.44 67.37 0.24 0.21 0.05 69.12 60.17 70.52 0.15 0.04 0.19 TJ_Jiang 77
78 FOLDpro 68.02 59.19 68.23 0.24 0.19 0.15 68.02 59.19 68.23 0.05 -0.05 -0.09 FOLDpro 78
79 mGenTHREADER 68.02 56.01 66.22 0.24 -0.08 -0.08 68.02 56.01 66.22 0.05 -0.35 -0.32 mGenTHREADER 79
80 FFASflextemplate 67.65 63.97 65.52 0.21 0.60 -0.15 69.12 63.97 67.72 0.15 0.40 -0.15 FFASflextemplate 80
81 GS−MetaServer2 67.65 60.54 68.93 0.21 0.31 0.23 69.48 60.54 70.21 0.19 0.07 0.15 GS−MetaServer2 81
82 PSI 67.28 62.87 64.88 0.18 0.50 -0.23 67.28 62.87 64.88 -0.02 0.30 -0.48 PSI 82
83 LOOPP_Server 67.28 60.66 61.60 0.18 0.32 -0.60 67.28 60.66 61.60 -0.02 0.09 -0.87 LOOPP_Server 83
84 CpHModels 66.91 62.99 64.96 0.15 0.51 -0.22 66.91 62.99 64.96 -0.05 0.31 -0.47 CpHModels 84
85 Pcons_local 66.91 62.50 64.96 0.15 0.47 -0.22 69.48 62.74 70.01 0.19 0.28 0.13 Pcons_local 85
86 Pcons_dot_net 66.91 62.50 64.96 0.15 0.47 -0.22 69.85 62.74 70.27 0.22 0.28 0.16 Pcons_dot_net 86
87 Pcons_multi 66.91 62.50 64.96 0.15 0.47 -0.22 69.85 62.99 68.76 0.22 0.31 -0.02 Pcons_multi 87
88 Softberry 66.91 57.11 65.25 0.15 0.01 -0.19 66.91 57.11 65.25 -0.05 -0.25 -0.44 Softberry 88
89 GeneSilicoMetaServer 66.54 59.68 66.71 0.12 0.23 -0.02 69.48 60.54 70.21 0.19 0.07 0.15 GeneSilicoMetaServer 89
90 xianmingpan 65.81 57.48 63.00 0.06 0.05 -0.44 65.81 57.48 63.00 -0.16 -0.21 -0.71 xianmingpan 90
91 SAM−T02−server 65.81 57.23 63.94 0.06 0.03 -0.33 65.81 57.23 63.94 -0.16 -0.24 -0.59 SAM−T02−server 91
92 SMEG−CCP 65.81 55.27 63.87 0.06 -0.14 -0.34 65.81 55.27 63.87 -0.16 -0.42 -0.60 SMEG−CCP 92
93 JIVE08 65.07 53.31 63.52 0.00 -0.31 -0.38 65.07 55.15 63.52 -0.23 -0.43 -0.64 JIVE08 93
94 FLOUDAS 57.72 43.51 54.58 -0.59 -1.14 -1.39 57.72 43.51 54.58 -0.91 -1.54 -1.71 FLOUDAS 94
95 Handl−Lovell 55.52 43.75 59.83 -0.77 -1.12 -0.80 58.09 49.02 63.69 -0.88 -1.01 -0.62 Handl−Lovell 95
96 Sasaki−Cetin−Sasai 54.04 49.39 60.14 -0.89 -0.64 -0.76 54.04 49.39 60.14 -1.26 -0.98 -1.05 Sasaki−Cetin−Sasai 96
97 SAINT1 51.84 41.79 59.92 -1.07 -1.29 -0.79 51.84 41.79 59.92 -1.46 -1.70 -1.07 SAINT1 97
98 FALCON_CONSENSUS 49.27 40.20 49.27 -1.28 -1.42 -1.99 50.73 40.20 49.27 -1.56 -1.85 -2.34 FALCON_CONSENSUS 98
99 FALCON 48.90 43.75 58.60 -1.31 -1.12 -0.94 49.27 43.75 58.60 -1.70 -1.51 -1.23 FALCON 99
100 keasar 44.12 42.28 56.43 -1.70 -1.25 -1.18 73.90 63.85 77.31 0.60 0.39 0.99 keasar 100
101 fais@hgc 43.75 37.87 58.01 -1.73 -1.62 -1.00 54.04 44.12 60.88 -1.26 -1.48 -0.96 fais@hgc 101
102 RBO−Proteus 43.38 41.79 55.89 -1.76 -1.29 -1.24 43.38 41.79 58.06 -2.25 -1.70 -1.29 RBO−Proteus 102
103 MUFOLD−MD 40.44 34.31 50.33 -1.99 -1.92 -1.87 50.00 40.32 55.44 -1.63 -1.84 -1.60 MUFOLD−MD 103
104 POEMQA 40.44 33.09 57.14 -1.99 -2.03 -1.10 75.73 66.05 80.58 0.77 0.60 1.38 POEMQA 104
105 forecast 40.07 29.53 52.46 -2.02 -2.33 -1.63 40.81 33.46 52.46 -2.49 -2.49 -1.96 forecast 105
106 PHAISTOS 39.71 36.77 51.55 -2.05 -1.71 -1.73 58.09 48.77 56.23 -0.88 -1.04 -1.51 PHAISTOS 106
107 Jiang_Zhu 39.34 34.93 49.85 -2.08 -1.87 -1.92 39.34 36.64 49.85 -2.63 -2.18 -2.27 Jiang_Zhu 107
108 fais−server 39.34 33.21 56.36 -2.08 -2.02 -1.19 49.27 46.57 57.24 -1.70 -1.25 -1.39 fais−server 108
109 circle 38.60 34.44 45.35 -2.14 -1.91 -2.43 71.69 63.85 68.95 0.39 0.39 0.00 circle 109
110 dill_ucsf 38.60 32.97 43.69 -2.14 -2.04 -2.62 38.60 32.97 43.69 -2.70 -2.53 -3.00 dill_ucsf 110
111 Frankenstein 38.60 31.00 48.10 -2.14 -2.21 -2.12 45.59 36.89 48.10 -2.04 -2.16 -2.48 Frankenstein 111
112 FrankensteinLong 38.60 31.00 48.10 -2.14 -2.21 -2.12 45.59 36.89 48.10 -2.04 -2.16 -2.48 FrankensteinLong 112
113 RPFM 38.60 28.43 42.15 -2.14 -2.42 -2.79 38.60 33.46 48.62 -2.70 -2.49 -2.42 RPFM 113
114 Wolynes 38.23 30.15 46.72 -2.17 -2.28 -2.28 42.65 37.87 46.90 -2.32 -2.07 -2.62 Wolynes 114
115 DistillSN 37.87 26.59 33.40 -2.20 -2.58 -3.78 41.91 36.52 38.31 -2.39 -2.20 -3.64 DistillSN 115
116 MeilerLabRene 37.50 37.01 54.90 -2.23 -1.69 -1.35 40.44 37.26 57.75 -2.52 -2.13 -1.33 MeilerLabRene 116
117 Distill 36.40 30.02 49.70 -2.32 -2.29 -1.94 40.44 32.11 51.08 -2.52 -2.61 -2.12 Distill 117
118 Scheraga 35.66 26.59 29.87 -2.38 -2.58 -4.18 36.40 31.98 37.28 -2.90 -2.63 -3.76 Scheraga 118
119 igor 34.93 31.00 37.45 -2.44 -2.21 -3.32 34.93 31.00 37.45 -3.04 -2.72 -3.74 igor 119
120 ShakAbInitio 34.19 26.59 44.72 -2.50 -2.58 -2.50 38.23 29.17 44.72 -2.73 -2.89 -2.88 ShakAbInitio 120
121 mariner1 34.19 24.63 27.53 -2.50 -2.75 -4.44 39.34 30.39 48.59 -2.63 -2.78 -2.42 mariner1 121
122 POEM 33.82 25.49 50.69 -2.53 -2.67 -1.83 43.75 40.44 80.58 -2.22 -1.83 1.38 POEM 122
123 MUFOLD−Server 33.09 26.72 43.02 -2.59 -2.57 -2.69 39.34 33.21 48.72 -2.63 -2.51 -2.40 MUFOLD−Server 123
124 rehtnap 31.98 29.78 32.60 -2.68 -2.31 -3.87 31.98 29.78 32.60 -3.31 -2.83 -4.32 rehtnap 124
125 schenk−torda−server 31.62 25.25 31.01 -2.71 -2.69 -4.05 33.82 27.45 32.21 -3.14 -3.05 -4.37 schenk−torda−server 125
126 RANDOM 29.00 23.84 29.00 -2.92 -2.81 -4.28 29.00 23.84 29.00 -3.59 -3.39 -4.75 RANDOM 126
127 Linnolt−UH−CMB 26.47 22.30 33.97 -3.13 -2.95 -3.72 26.47 22.30 33.97 -3.83 -3.54 -4.16 Linnolt−UH−CMB 127
128 panther_server 26.10 24.39 13.56 -3.16 -2.77 -6.02 26.10 24.39 13.56 -3.86 -3.34 -6.58 panther_server 128
129 mahmood−torda−server 25.00 21.20 38.90 -3.25 -3.04 -3.16 29.04 26.23 38.90 -3.59 -3.17 -3.57 mahmood−torda−server 129
130 Pushchino 23.90 21.69 7.77 -3.34 -3.00 -6.67 23.90 21.69 7.77 -4.07 -3.60 -7.27 Pushchino 130
131 TWPPLAB 22.79 19.61 8.14 -3.43 -3.17 -6.63 22.79 19.61 8.14 -4.17 -3.79 -7.23 TWPPLAB 131
132 DelCLab 22.43 19.73 8.17 -3.46 -3.16 -6.63 23.90 20.59 15.25 -4.07 -3.70 -6.38 DelCLab 132
133 3Dpro                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 3Dpro 133
134 Abagyan                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 Abagyan 134
135 BHAGEERATH                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 BHAGEERATH 135
136 CBSU                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 CBSU 136
137 FEIG_REFINE                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 FEIG_REFINE 137
138 Fiser−M4T                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 Fiser−M4T 138
139 HCA                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 HCA 139
140 LEE−SERVER                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 LEE−SERVER 140
141 NIM2                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 NIM2 141
142 Nano_team                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 Nano_team 142
143 OLGAFS                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 OLGAFS 143
144 Ozkan−Shell                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 Ozkan−Shell 144
145 POISE                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 POISE 145
146 PZ−UAM                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 PZ−UAM 146
147 ProtAnG                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 ProtAnG 147
148 ProteinShop                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 ProteinShop 148
149 SAMUDRALA                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 SAMUDRALA 149
150 TsaiLab                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 TsaiLab 150
151 UCDavisGenome                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 UCDavisGenome 151
152 Wolfson−FOBIA                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 Wolfson−FOBIA 152
153 YASARA                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 YASARA 153
154 YASARARefine                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 YASARARefine 154
155 Zhou−SPARKS                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 Zhou−SPARKS 155
156 dill_ucsf_extended                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 dill_ucsf_extended 156
157 huber−torda−server                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 huber−torda−server 157
158 jacobson                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 jacobson 158
159 mti                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 mti 159
160 mumssp                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 mumssp 160
161 psiphifoldings                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 psiphifoldings 161
162 ricardo                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 ricardo 162
163 rivilo                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 rivilo 163
164 sessions                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 sessions 164
165 taylor                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 taylor 165
166 test_http_server_01                   -2.92 -2.81 -4.28                   -3.59 -3.39 -4.75 test_http_server_01 166