T0493

Targets
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T0493

C-terminal domain of DNA helicase APC89291.2 from Lactobacillus plantarun

Target type: Human/Server

Target sequence:

>T0493 DNA helicase APC89291.2, Lactobacillus plantarun, 174 residues
SNASYRSTQQITDFTKEILVNGEAVTAFDRQGDLPNVVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQENYQREDERQLLYTICSRAMHELTLVAVGSLSPLLARVNHALYTLNEAK

Structure:
Method: X-ray, res=1.66Å, R/Rfree=0.19/0.23
Determined by: MCSG
PDB ID: 3dmn

3dmn cartoon
Cartoon diagram of 493: 3dmn

PyMOL of 3dmn

Domains:  PyMOL of domains

Single domain. A piece of a larger protein, which is nevetheless stable and structured, except two loops.

Structure classification:

P-loop-containing nucleoside triphosphate hydrolase fold, P-loop motif deteriorated.

3dmn cartoon
Ribbon diagram of 493: 3dmn

CASP category:

Comparative modeling:medium.

Closest templates:

2is6, 1pjr, 1uaa. 

Conservation:                 8  69978 58   5                         5 9  6                              5 665 7   5       5                                  6 6 5 5997997 7                                   5 85  7976  7                   7 5                                                
2IS1_A_                    -IRLEQNYRSTSNILSAANALIENNNGR------LGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIEGQADT-WQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSL--------DEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMGTPMVENDSGYKLGQRVRHAK    174
gi_108797788_ref_YP_63798  SSRLNINYRTTAEILGWSLGLMRGEPIDDMEGGLDSIAGCKSYVHGSPPMLSGSGTADAEAEHIAKVVNAWIDRGVAPSEIGIAVRAKWFASKIEHALKAAGIAT------------VDLARASE-DDEAVHVGTMHRMKGLEFRCMCVAGVTAKWVPALNAVTPIDDDKQTHQRDLERERCLLFVACTRAREELLVTWHGE-----------PSPFIADLAHGKEENQ------------------------------------    675
gi_168214788_ref_ZP_02640  IYNLNKSYRSTYEIMEYANKYLDED------------RIIPIVRHGKPVEEIEFHNDEELSESIIESLKEFSNEG--LESIAIITRDKEELEKVYNLISNKVHL------------VKFDNEDVL-YKGGNVIIPSYFAKGLEFDGVIIVDNGSLKD--------------------ENEDLIKYIMSTRALHRLKEIQFK----------------------------------------------------------------    695
gi_169191099_ref_ZP_02850  FFELNRSYRSTMEIIEFANRILGAMGGG-------VKPAVPVFRSGDPVEVVQVDRAAWQKQIAQSIREWQADGQ--FQTISVIGRTAEQCAELHDYLVREGLEA-----------SLVQSKQPE-YGGGLSVVPVYLSKGLEFDAVLIADAGADMYT-------------------QDDAKLLYVGCTRALHKLKLLHRES-----------LTTLINEV--------------------------------------------    544
gi_168158683_ref_ZP_02593  YYELTRSYRSTKEIIEFANEIIKNAEIP-------VGLATPVFRSGEEVKVIQAEDQFNEIMKTLKHLQNDD-----VKTIAVIGRTDDECRDIYEKLTKAGVAV-----------NVIEADQSK-YEGGISVVPVYLAKGLEFDAVLLIDVDEEHYKN-----------------TKHDAKLLYVGCTRSLHDLWIFHSGE-----------ASPLIKK---------------------------------------------    670
gi_168165560_ref_ZP_02600  YYELTRSYRSTKEIIEFANEIIKNAEIP-------VGLAMPVFRSGEEVKVIHTEDQFTEILKTLKQLQNAD-----VKTIAVIGRTDDECRDMYEKLTNAGLTV-----------NVIEANQSK-YEGGISVVPVYLAKGLEFDAVLLIDVDEEHYKN-----------------TKHDAKLLYVGCTRSLHDLWIFHSGE-----------ASPLIKK---------------------------------------------    670
gi_169826457_ref_YP_00169  FRTLQKSYRTTIEIMEVANEILAQMDEQ-------LPLVEPVVRHGNVPSFIQAEQFDAL--KIKEIFDTIRQHG--HRSIALICKTTVEAIMMQNDLTAHQLPA-----------QLLTENDSI-NQEMLLVVPSHLAKGLEFDAVIVAAFHTPFYD------------------TPIDRKLLYVALTRAMHELYLIGPSK-----------NTFLLEN---------------------------------------------    723
gi_110799377_ref_YP_69630  YKHLSQSYRSTVEIINYANKVLVKQNTY-------EEPAKPVLRHGMVPEEIEFNNAKEFCERLDNIVKKVKDEG--KTSIAIVGKTLDECKKIRTLVKKYSNYD----------FELIKDDQKE-FDLNLIIIPSYLTKGLEFDCTIVYNLNKENYND-----------------NEIDKKLLYVVLTRALHYEYIFYKEE-----------KSPLIG----------------------------------------------    745
gi_29375517_ref_NP_814671  TYQLLNSYRSSKEITRLFQTLGTQPEQ---------LTIVPIRHDGEKPTFIPCDSASDYLKAIVTSITTFDSK----ESTAIITKTFAEKEQLTKELCA--------------------SLSLE-EHPSLQVLSIDMAKGLEFDNVILHNPNVNRYSD-----------------NKRDKKILYTAISRGMKRVVLPYTGT-----------LSEWFTPYLAAQ----------------------------------------    708
gi_28377335_ref_NP_784227  LITLNKSYRSTEQITNFAKALLPDGD-----------QIQAFTRKGDLPKVMIRYGEDAALSSLRSEVEHQLKA---TNTVAVLTKDLAESKQVYQYLKRY-TVT-----------TLMADSDRT-MPQGVIVMPIYLAKGLEFDAVVAYDVSATNYP------------------DADSVGILYTIASRAMHHLTLLSIGD-----------VSPLIAQLDPTLFTIEHQVRV-------------------------------    736
gi_148543438_ref_YP_00127  LIALRRSYRSTTEITNFAKALLPDGD-----------KIISFTRHGKKPRLLVRYSDKESQQSLLDETLKLADE---HETVAILTKNQEQAAGIYQLLHRQKVEN-----------IHLLDKDASELPKGVLILPIYLAKGLEFDAVLAADVSAKNLT------------------NTDEVGMIYTMASRAMHELVLLSNGS-----------VSDAINEKAGRLLTIEYQLPNKN-----------------------------    737
gi_116492059_ref_YP_80379  LITLNRSYRSTAQITNFAAALLPDGH-----------KIQAFSREGDLPKVIIADNEQQAVVDMTNLCRDELQQ---YGTIAILTKNMAESEHVATLLHELKP-------------SLLNDGDRS-LPKGIVVLPIYLAKGLEFDSVIAYNVSEANFP------------------GRLWRGTLYTIASRAMHQLHLISIGK-----------VSNLITQIKPDQFSFQKSFNITPHKSQKLDE---------------------    724
gi_42519709_ref_NP_965639  VVQLTKSYRSTKEITNFTKQILRQGE-----------KIEAFDRRGPKPAFYKRDSIEKEYSALEDILAENDEQ---KLTTAIITKTLAEAQEVAKVLKERKIKA-----------TLIGSANQR-LVPGTLVMPSYLAKGLEFDAVVAWGVSKENYH------------------QLDETQLLYTIASRAMYKLDLIYTGE-----------KSPLFDNLDEKTYVNK------------------------------------    736
gi_116495451_ref_YP_80718  VVQLTQSYRSTKQVTDFTKAILTSGQ-----------KIVAFNRQGPLPKLVVRPDEAGLMAALQDQLKINNEA---KQTTAVIAKTLEAAEAIYEQMKAAGIKV-----------TLIKSENQR-LAAGVIVVPSFLAKGLEFDAVVLWQINAANYH------------------EEDERELLYTVASRAMHRLTMLASPD-----------VTPLLDKVPADLYERG------------------------------------    735
T0493_DNA_helicase_APC892  ---SNASYRSTQQITDFTKEILVNGE-----------AVTAFDRQGDLPNVVVTPNFEAGVDQVVDQLAMNDSE---RDTTAIIGKSLAECEALTKALKARGEQV-----------TLIQTENQR-LAPGVIVVPSFLAKGLEFDAVIVWNANQENYQ------------------REDERQLLYTICSRAMHELTLVAVGS-----------LSPLLARVNHALYTLNEAK---------------------------------    143
gi_168135096_ref_ZP_02578  GINLTRSYRSTKPIIEFTRALVPEGK-----------NIHAFERDGEKPTVTKVSNESELHEHITAKVAELQKEQ--HNTIAIICKSAAESAAAYEALNHI-ENI-----------KLVKSNSAE-YEQGIVVIPAYLAKGIEFDAVIIYDASKDVYS------------------DESVRRLFYTACTRAMHELHLYSVGE-----------VSPFVLGADSESFELITTP---------------------------------    746
gi_49480066_ref_YP_035300  GINLTRSYRSTKPIIEFTRALVPEGK-----------NIHAFERDGEKPTVTKVSNHNELHEHITSKIAELQKQN--HNTIAIICKSAAESAAAYEALSHI-ENI-----------KLVKSNSAE-YEQGIVVIPAYLAKGIEFDAVIIYDASKDVYN------------------DESVRRLFYTACTRAMHELQLYSVGE-----------VSPFIVEADSESFELIT-P---------------------------------    746
gi_167635442_ref_ZP_02393  GINLTRSYRSTKPIIEFTRALVPEGK-----------NIHAFERDGEKPTVTKVANESELHERITAKVAELQKQN--HNTIAIICKSAAESAAAYEALSPI-ENI-----------KLVKSNSAE-YEQGIVVIPAYLAKGIEFDAVIIYDASKAVYN------------------DESVRRLFYTACTRAMHELQLYSVGE-----------VSPFIVEADSESFELIT-P---------------------------------    746
gi_16080398_ref_NP_391225  YVRLKRTYRSTRQIVEFTKAMLQDGA-----------DIEPFNRSGEMPLVVKTEGHESLCQKLAQEIGRLKKKG--HETIAVICKTAHQCIQAHAHMSEY-TDV-----------RLIHKENQP-FQKGVCVIPVYLAKGIEFDAVLVYDASEEHYH------------------TEHDRRLLYTACTRAMHMLAVFYTGE-----------ASPFVTAVPPHLYQIAE-----------------------------------    745
gi_89895484_ref_YP_518971  GMELCRSYRSTIEISGFTQKILENK------------KLIPIERHGDTPTITVCRTPKEQLAEIQHLIEEFRQSE--YATLGVICKSQQQARLLFAQLHGVYDTM-----------VLLDFGSSE-FQEGIVVTSVHMAKGLEFDQVIVPEVSDDLFK------------------TQLDRSLLYIACTRAMHKLDLTCCGE-----------KTKFLHSC--------------------------------------------    274
Consensus_aa:              ..pLppoYRST.pIhphhp.ll.p..............h.sh.+pGp.sphh...s...bh..l.p.h....pp.....ohAlls+s..pt..h.p.lp.....h............hh.s.s.p.b..tl.lhs.@hAKGLEFDsVllhshs...h....................p.-..lhYhhhoRAhccL.lh...p............o.hl.p.............................................
Consensus_ss:              eeee      hhhhhhhhhhhhh                         eeeeee  hhhhhhhhhhhhhhhhh       eeeee  hhhhhhhhhhhhh                hhh h         eeee hhh       eeeee                           hhhhhhhhhhhhhh  eeeeee                hhhhh  hhh                                        
 

Target sequence - PDB file inconsistencies:

T0493    3dmn.pdb    T0493.pdb    PyMOL    PyMOL of domains    

T0493    1 SNASYRSTQQITDFTKEILVNGEAVTAFDRQGDLPNVVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQENYQREDERQLLYTICSRAMHELTLVAVGSLSPLLARVNHALYTLNEAK 174
           ~~|||||||||||||||||||~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~
3dmnA  596 --ASYRSTQQITDFTKEILVN--------RQGDLPNVVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTEN-RLAPGVIVVPSFLAKGLEFDAVIVWNANQENYQREDERQLLYTICSRAMHELTLVAVGSLSPLLARVNHALYTLNE-- 765

Residue change log: change 649, 738, MSE to MET;

Single domain protein: target 3-21, 30-95, 97-172 ; pdb 596-614, 623-688, 690-765

Sequence classification:

A domain from COG3973 in CDD.

Server predictions:

T0493:pdb 596-765:seq 3-172:CM_medium;   alignment

distribution of first scores
First models for T0493: Gaussian kernel density estimation for GDT-TS scores of the first server models, plotted at various bandwidths (=standard deviations). The GDT-TS scores are shown as a spectrum along the horizontal axis: each bar represents first server model. The bars are colored green, gray and black for top 10, bottom 25% and the rest of servers. The family of curves with varying bandwidth is shown. Bandwidth varies from 0.3 to 8.2 GDT-TS % units with a step of 0.1, which corresponds to the color ramp from magenta through blue to cyan. Thicker curves: red, yellow-framed brown and black, correspond to bandwidths 1, 2 and 4 respectively.

click on a score in the table below to display the model in PyMOL

# GROUP ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ ↓ GROUP #
T0493 T0493 T0493 T0493
First score First Z-score Best score Best Z-score
1 EB_AMU_Physics 77.64 72.88 78.10 0.80 0.86 0.74 77.64 72.88 78.75 0.74 0.77 0.70 EB_AMU_Physics 1
2 IBT_LT 77.17 72.62 77.93 0.77 0.85 0.74 77.17 72.62 77.93 0.71 0.76 0.65 IBT_LT 2
3 LEE 77.17 71.07 81.06 0.77 0.76 0.91 77.33 72.46 81.06 0.72 0.75 0.84 LEE 3
4 MULTICOM−RANK 76.86 71.79 77.77 0.75 0.80 0.73 76.86 71.79 78.19 0.69 0.70 0.67 MULTICOM−RANK 4
5 KudlatyPredHuman 76.86 71.58 78.14 0.75 0.79 0.75 76.86 71.58 78.84 0.69 0.69 0.71 KudlatyPredHuman 5
6 MULTICOM 76.86 70.76 78.54 0.75 0.74 0.77 77.02 72.41 78.54 0.70 0.74 0.69 MULTICOM 6
7 3DShotMQ 76.71 71.64 78.13 0.75 0.79 0.75 76.71 71.64 78.13 0.68 0.69 0.66 3DShotMQ 7
8 POEMQA 76.71 71.53 77.85 0.75 0.79 0.73 76.71 71.53 78.45 0.68 0.69 0.68 POEMQA 8
9 MUProt 76.71 71.53 78.60 0.75 0.79 0.77 77.02 71.58 78.60 0.70 0.69 0.69 MUProt 9
10 Elofsson 76.71 71.43 78.13 0.75 0.78 0.75 77.02 71.64 78.68 0.70 0.69 0.70 Elofsson 10
11 Frankenstein 76.55 72.41 77.23 0.74 0.84 0.70 76.55 72.41 77.23 0.67 0.74 0.61 Frankenstein 11
12 Zico 76.55 71.58 77.86 0.74 0.79 0.73 76.55 71.95 79.51 0.67 0.71 0.75 Zico 12
13 ZicoFullSTP 76.55 71.58 77.86 0.74 0.79 0.73 76.55 71.95 79.51 0.67 0.71 0.75 ZicoFullSTP 13
14 MULTICOM−REFINE 76.55 70.34 78.21 0.74 0.72 0.75 77.17 71.89 78.64 0.71 0.71 0.69 MULTICOM−REFINE 14
15 GeneSilico 76.55 70.34 78.21 0.74 0.72 0.75 76.71 72.77 79.28 0.68 0.77 0.73 GeneSilico 15
16 McGuffin 76.55 70.34 78.21 0.74 0.72 0.75 76.71 72.77 78.64 0.68 0.77 0.69 McGuffin 16
17 GS−KudlatyPred 76.40 72.77 76.97 0.73 0.86 0.68 76.40 72.77 77.03 0.66 0.77 0.60 GS−KudlatyPred 17
18 MULTICOM−CMFR 76.24 72.00 77.02 0.72 0.81 0.69 76.40 72.00 78.42 0.66 0.72 0.68 MULTICOM−CMFR 18
19 Bates_BMM 76.24 71.48 78.43 0.72 0.78 0.76 76.24 71.48 78.43 0.65 0.68 0.68 Bates_BMM 19
20 mufold 76.09 71.74 78.56 0.71 0.80 0.77 76.09 71.74 79.11 0.64 0.70 0.72 mufold 20
21 MULTICOM−CLUSTER 76.09 70.91 78.22 0.71 0.75 0.75 76.09 70.91 79.08 0.64 0.65 0.72 MULTICOM−CLUSTER 21
22 Chicken_George 75.93 69.72 76.08 0.70 0.68 0.63 76.71 72.77 78.81 0.68 0.77 0.70 Chicken_George 22
23 TASSER 75.93 67.03 78.93 0.70 0.53 0.79 75.93 71.22 78.93 0.63 0.67 0.71 TASSER 23
24 3Dpro 75.78 71.22 75.55 0.69 0.77 0.60 77.33 73.71 76.87 0.72 0.83 0.59 3Dpro 24
25 FFASstandard 75.78 70.60 76.16 0.69 0.73 0.64 75.78 70.60 76.41 0.62 0.63 0.56 FFASstandard 25
26 FFASflextemplate 75.78 70.60 76.16 0.69 0.73 0.64 75.78 70.60 76.16 0.62 0.63 0.54 FFASflextemplate 26
27 MUSTER 75.78 69.15 77.88 0.69 0.65 0.73 75.78 69.15 77.88 0.62 0.53 0.65 MUSTER 27
28 HHpred5 75.62 71.07 77.94 0.68 0.76 0.74 75.62 71.07 77.94 0.61 0.66 0.65 HHpred5 28
29 FrankensteinLong 75.62 70.34 76.06 0.68 0.72 0.63 75.62 70.34 76.15 0.61 0.61 0.54 FrankensteinLong 29
30 Zhang−Server 75.62 69.20 79.28 0.68 0.65 0.81 75.93 69.67 79.84 0.63 0.57 0.77 Zhang−Server 30
31 Sternberg 75.62 69.20 79.28 0.68 0.65 0.81 75.62 69.20 79.28 0.61 0.54 0.73 Sternberg 31
32 Zhang 75.62 68.48 80.50 0.68 0.61 0.88 75.78 70.76 80.59 0.62 0.64 0.81 Zhang 32
33 pro−sp3−TASSER 75.47 71.22 78.33 0.68 0.77 0.76 75.47 71.22 78.94 0.60 0.67 0.71 pro−sp3−TASSER 33
34 fams−ace2 75.47 70.39 77.45 0.68 0.72 0.71 75.62 71.17 77.72 0.61 0.66 0.64 fams−ace2 34
35 METATASSER 75.31 70.55 78.62 0.67 0.73 0.77 75.31 70.55 78.62 0.59 0.62 0.69 METATASSER 35
36 COMA−M 75.31 70.44 77.99 0.67 0.72 0.74 75.31 70.44 78.17 0.59 0.62 0.66 COMA−M 36
37 COMA 75.31 70.44 77.99 0.67 0.72 0.74 75.31 70.44 78.17 0.59 0.62 0.66 COMA 37
38 forecast 75.31 69.31 77.86 0.67 0.66 0.73 75.47 70.70 78.46 0.60 0.63 0.68 forecast 38
39 POEM 75.31 69.10 75.34 0.67 0.65 0.59 75.93 70.08 78.45 0.63 0.59 0.68 POEM 39
40 3DShot1 75.31 69.00 77.89 0.67 0.64 0.73 75.31 69.00 77.89 0.59 0.52 0.65 3DShot1 40
41 ZicoFullSTPFullData 75.31 68.38 79.13 0.67 0.61 0.80 76.55 71.58 79.51 0.67 0.69 0.75 ZicoFullSTPFullData 41
42 HHpred4 75.16 69.56 77.58 0.66 0.67 0.72 75.16 69.56 77.58 0.58 0.56 0.63 HHpred4 42
43 ABIpro 75.16 69.56 75.11 0.66 0.67 0.58 75.16 69.56 75.11 0.58 0.56 0.48 ABIpro 43
44 Pcons_local 75.00 70.65 75.88 0.65 0.74 0.62 75.00 70.65 75.88 0.57 0.63 0.53 Pcons_local 44
45 Pcons_dot_net 75.00 70.65 75.88 0.65 0.74 0.62 75.00 70.65 77.43 0.57 0.63 0.62 Pcons_dot_net 45
46 Pcons_multi 75.00 70.65 75.88 0.65 0.74 0.62 75.31 72.31 77.88 0.59 0.74 0.65 Pcons_multi 46
47 MidwayFolding 74.84 68.94 75.46 0.64 0.64 0.60 75.16 70.91 76.02 0.58 0.65 0.53 MidwayFolding 47
48 FAMS−multi 74.53 70.29 75.32 0.62 0.72 0.59 74.53 70.29 75.58 0.54 0.61 0.51 FAMS−multi 48
49 Bilab−UT 74.53 69.77 77.95 0.62 0.69 0.74 75.16 69.77 77.95 0.58 0.57 0.65 Bilab−UT 49
50 RAPTOR 74.53 69.15 76.12 0.62 0.65 0.64 74.53 69.20 76.12 0.54 0.54 0.54 RAPTOR 50
51 keasar−server 74.38 70.03 76.14 0.62 0.70 0.64 74.38 70.03 77.56 0.53 0.59 0.63 keasar−server 51
52 FFASsuboptimal 74.38 69.10 75.39 0.62 0.65 0.60 74.38 69.10 75.39 0.53 0.53 0.50 FFASsuboptimal 52
53 circle 74.38 67.86 77.35 0.62 0.58 0.70 76.24 71.74 77.97 0.65 0.70 0.65 circle 53
54 Jones−UCL 74.22 68.32 73.55 0.61 0.60 0.49 74.22 68.32 73.55 0.52 0.48 0.38 Jones−UCL 54
55 HHpred2 74.07 68.69 75.65 0.60 0.62 0.61 74.07 68.69 75.65 0.51 0.50 0.51 HHpred2 55
56 DBAKER 74.07 67.96 77.50 0.60 0.58 0.71 75.47 71.22 81.50 0.60 0.67 0.87 DBAKER 56
57 3DShot2 74.07 67.86 77.09 0.60 0.58 0.69 74.07 67.86 77.09 0.51 0.45 0.60 3DShot2 57
58 SAMUDRALA 74.07 67.65 78.05 0.60 0.56 0.74 75.47 70.34 80.15 0.60 0.61 0.78 SAMUDRALA 58
59 fais−server 73.91 69.56 74.57 0.59 0.67 0.55 73.91 69.56 74.57 0.50 0.56 0.45 fais−server 59
60 ricardo 73.60 66.46 73.63 0.57 0.49 0.50 74.22 67.70 73.63 0.52 0.44 0.39 ricardo 60
61 A−TASSER 73.60 66.46 75.17 0.57 0.49 0.58 73.91 68.84 75.17 0.50 0.51 0.48 A−TASSER 61
62 BAKER−ROBETTA 73.60 65.84 77.31 0.57 0.46 0.70 74.22 69.56 77.31 0.52 0.56 0.61 BAKER−ROBETTA 62
63 PSI 73.45 69.31 74.14 0.56 0.66 0.53 75.00 70.03 75.13 0.57 0.59 0.48 PSI 63
64 Softberry 72.36 62.22 70.39 0.50 0.25 0.32 72.36 62.22 70.39 0.40 0.09 0.19 Softberry 64
65 nFOLD3 72.20 65.79 75.22 0.49 0.46 0.59 75.93 69.72 76.72 0.63 0.57 0.58 nFOLD3 65
66 AMU−Biology 71.89 67.55 72.58 0.48 0.56 0.44 71.89 67.55 72.58 0.37 0.43 0.33 AMU−Biology 66
67 SAM−T08−human 71.89 66.41 76.46 0.48 0.49 0.65 74.84 69.93 76.46 0.56 0.58 0.56 SAM−T08−human 67
68 SAM−T08−server 71.43 65.32 74.56 0.45 0.43 0.55 72.98 67.18 75.75 0.44 0.41 0.52 SAM−T08−server 68
69 SHORTLE 70.34 63.09 69.97 0.39 0.30 0.30 70.34 63.09 69.97 0.28 0.14 0.17 SHORTLE 69
70 PS2−server 70.19 63.98 70.99 0.38 0.35 0.35 70.19 63.98 70.99 0.27 0.20 0.23 PS2−server 70
71 PS2−manual 70.19 63.98 70.99 0.38 0.35 0.35 70.19 63.98 70.99 0.27 0.20 0.23 PS2−manual 71
72 SMEG−CCP 70.19 60.87 69.69 0.38 0.17 0.28 70.19 60.87 69.69 0.27 -0.00 0.15 SMEG−CCP 72
73 FALCON_CONSENSUS 69.25 63.87 65.86 0.33 0.35 0.07 69.25 63.87 65.86 0.21 0.19 -0.08 FALCON_CONSENSUS 73
74 FALCON 69.25 63.87 65.86 0.33 0.35 0.07 69.25 63.87 65.86 0.21 0.19 -0.08 FALCON 74
75 LevittGroup 68.94 60.87 68.75 0.31 0.17 0.23 69.41 62.27 69.67 0.22 0.09 0.15 LevittGroup 75
76 TJ_Jiang 68.63 63.25 68.07 0.29 0.31 0.19 72.36 69.25 69.59 0.40 0.54 0.14 TJ_Jiang 76
77 fais@hgc 68.48 62.06 69.29 0.29 0.24 0.26 70.19 63.56 73.05 0.27 0.17 0.35 fais@hgc 77
78 GeneSilicoMetaServer 66.77 61.70 64.28 0.19 0.22 -0.01 74.69 69.82 75.98 0.55 0.58 0.53 GeneSilicoMetaServer 78
79 SAM−T06−server 66.30 59.06 67.20 0.16 0.07 0.15 71.89 66.92 74.19 0.37 0.39 0.42 SAM−T06−server 79
80 pipe_int 65.22 59.21 65.68 0.10 0.08 0.06 65.22 59.21 65.68 -0.05 -0.11 -0.09 pipe_int 80
81 FAMSD 63.82 54.50 60.75 0.03 -0.20 -0.21 69.10 62.16 66.91 0.20 0.08 -0.02 FAMSD 81
82 Kolinski 61.65 51.81 62.86 -0.09 -0.35 -0.09 61.80 51.81 63.04 -0.26 -0.58 -0.25 Kolinski 82
83 FEIG 54.81 43.94 56.13 -0.48 -0.80 -0.46 74.53 69.36 76.35 0.54 0.55 0.55 FEIG 83
84 Phyre_de_novo 53.42 46.89 47.96 -0.55 -0.63 -0.91 53.42 46.89 48.39 -0.79 -0.90 -1.14 Phyre_de_novo 84
85 FLOUDAS 52.48 37.89 55.71 -0.61 -1.15 -0.48 54.04 39.55 56.50 -0.75 -1.37 -0.65 FLOUDAS 85
86 Jiang_Zhu 45.03 36.65 48.67 -1.02 -1.22 -0.87 45.03 36.65 48.67 -1.32 -1.56 -1.12 Jiang_Zhu 86
87 LOOPP_Server 43.79 35.20 37.09 -1.09 -1.31 -1.51 47.98 38.15 39.99 -1.13 -1.46 -1.65 LOOPP_Server 87
88 huber−torda−server 42.70 31.11 36.35 -1.15 -1.54 -1.55 46.58 36.59 43.52 -1.22 -1.56 -1.44 huber−torda−server 88
89 FOLDpro 42.55 36.75 37.13 -1.16 -1.22 -1.50 75.62 68.89 75.51 0.61 0.52 0.50 FOLDpro 89
90 Wolfson−FOBIA 39.29 35.04 47.52 -1.34 -1.32 -0.93 39.29 35.04 47.52 -1.68 -1.66 -1.19 Wolfson−FOBIA 90
91 Hao_Kihara 38.66 36.70 36.18 -1.38 -1.22 -1.56 39.75 38.09 36.89 -1.65 -1.47 -1.84 Hao_Kihara 91
92 BioSerf 38.20 36.96 39.17 -1.40 -1.21 -1.39 38.20 36.96 39.17 -1.75 -1.54 -1.70 BioSerf 92
93 Phyre2 38.04 33.18 44.79 -1.41 -1.42 -1.08 39.60 37.53 45.42 -1.66 -1.50 -1.32 Phyre2 93
94 Phragment 37.73 32.87 46.18 -1.43 -1.44 -1.01 38.51 37.06 46.18 -1.73 -1.53 -1.28 Phragment 94
95 mGenTHREADER 37.58 36.13 32.80 -1.44 -1.25 -1.74 37.58 36.13 32.80 -1.79 -1.59 -2.09 mGenTHREADER 95
96 fleil 37.42 36.08 35.69 -1.45 -1.26 -1.58 38.66 36.39 36.51 -1.72 -1.58 -1.86 fleil 96
97 Poing 37.42 32.45 44.53 -1.45 -1.47 -1.10 38.66 37.06 45.64 -1.72 -1.53 -1.31 Poing 97
98 CpHModels 37.11 35.25 15.21 -1.46 -1.31 -2.71 37.11 35.25 15.21 -1.82 -1.65 -3.15 CpHModels 98
99 3D−JIGSAW_AEP 37.11 35.15 36.53 -1.46 -1.31 -1.54 38.82 36.13 37.03 -1.71 -1.59 -1.83 3D−JIGSAW_AEP 99
100 panther_server 36.80 33.59 15.50 -1.48 -1.40 -2.69 37.58 36.13 19.01 -1.79 -1.59 -2.92 panther_server 100
101 3D−JIGSAW_V3 34.94 32.35 32.86 -1.58 -1.47 -1.74 38.20 36.23 40.09 -1.75 -1.59 -1.65 3D−JIGSAW_V3 101
102 GS−MetaServer2 32.14 29.24 31.15 -1.74 -1.65 -1.83 74.69 69.82 75.98 0.55 0.58 0.53 GS−MetaServer2 102
103 SAM−T02−server 31.37 27.85 16.34 -1.78 -1.73 -2.65 31.37 28.88 24.94 -2.18 -2.06 -2.56 SAM−T02−server 103
104 Pushchino 31.21 28.31 30.41 -1.79 -1.71 -1.87 31.21 28.31 30.41 -2.19 -2.10 -2.23 Pushchino 104
105 xianmingpan 28.73 25.62 34.40 -1.93 -1.86 -1.65 28.73 25.62 34.40 -2.35 -2.27 -1.99 xianmingpan 105
106 Distill 28.73 23.03 35.39 -1.93 -2.01 -1.60 29.35 23.96 36.75 -2.31 -2.38 -1.85 Distill 106
107 ACOMPMOD 28.42 24.95 32.69 -1.95 -1.90 -1.75 46.27 39.29 46.07 -1.24 -1.39 -1.28 ACOMPMOD 107
108 FUGUE_KM 27.02 24.84 26.76 -2.03 -1.91 -2.07 45.65 37.68 42.89 -1.28 -1.49 -1.48 FUGUE_KM 108
109 PRI−Yang−KiharA 26.71 23.60 33.38 -2.04 -1.98 -1.71 26.71 23.60 33.38 -2.48 -2.40 -2.05 PRI−Yang−KiharA 109
110 StruPPi 25.31 20.34 23.48 -2.12 -2.16 -2.25 29.04 24.17 25.59 -2.33 -2.36 -2.53 StruPPi 110
111 DistillSN 21.74 17.75 23.28 -2.32 -2.31 -2.26 21.74 17.75 24.68 -2.79 -2.77 -2.58 DistillSN 111
112 MUFOLD−Server 20.50 17.60 21.33 -2.39 -2.32 -2.37 20.50 17.60 21.35 -2.87 -2.78 -2.78 MUFOLD−Server 112
113 MUFOLD−MD 20.03 16.25 30.26 -2.42 -2.40 -1.88 26.86 23.81 32.83 -2.47 -2.38 -2.09 MUFOLD−MD 113
114 SAINT1 19.88 16.67 28.97 -2.42 -2.38 -1.95 19.88 16.67 28.97 -2.91 -2.84 -2.32 SAINT1 114
115 Wolynes 19.57 17.18 28.67 -2.44 -2.35 -1.97 19.88 17.18 29.34 -2.91 -2.81 -2.30 Wolynes 115
116 keasar 19.41 13.35 27.29 -2.45 -2.57 -2.04 75.31 72.20 77.78 0.59 0.73 0.64 keasar 116
117 MeilerLabRene 18.79 17.29 26.01 -2.49 -2.34 -2.11 19.10 17.29 29.44 -2.96 -2.80 -2.29 MeilerLabRene 117
118 RBO−Proteus 17.70 14.29 29.12 -2.55 -2.51 -1.94 20.19 16.36 29.12 -2.89 -2.86 -2.31 RBO−Proteus 118
119 rehtnap 16.61 15.37 5.90 -2.61 -2.45 -3.22 16.61 15.37 5.90 -3.11 -2.93 -3.72 rehtnap 119
120 Scheraga 15.84 13.04 23.23 -2.65 -2.59 -2.27 23.45 17.13 25.02 -2.68 -2.81 -2.56 Scheraga 120
121 schenk−torda−server 14.91 12.42 19.08 -2.70 -2.62 -2.50 14.91 12.42 19.08 -3.22 -3.12 -2.92 schenk−torda−server 121
122 RANDOM 14.51 12.44 14.51 -2.72 -2.62 -2.75 14.51 12.44 14.51 -3.25 -3.12 -3.20 RANDOM 122
123 mahmood−torda−server 13.51 12.32 21.71 -2.78 -2.63 -2.35 14.44 12.32 21.71 -3.25 -3.12 -2.76 mahmood−torda−server 123
124 DelCLab 11.96 9.99 13.34 -2.87 -2.76 -2.81 15.68 14.96 22.77 -3.17 -2.95 -2.70 DelCLab 124
125 TWPPLAB 11.18 9.89 8.85 -2.91 -2.77 -3.06 11.18 9.89 8.85 -3.46 -3.28 -3.54 TWPPLAB 125
126 OLGAFS 11.03 9.37 3.20 -2.92 -2.80 -3.37 15.22 12.63 9.35 -3.20 -3.10 -3.51 OLGAFS 126
127 mariner1 8.85 8.64 -12.72 -3.04 -2.84 -4.24 46.27 35.61 41.20 -1.24 -1.63 -1.58 mariner1 127
128 Abagyan                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 Abagyan 128
129 BHAGEERATH                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 BHAGEERATH 129
130 CBSU                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 CBSU 130
131 FEIG_REFINE                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 FEIG_REFINE 131
132 Fiser−M4T                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 Fiser−M4T 132
133 HCA                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 HCA 133
134 Handl−Lovell                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 Handl−Lovell 134
135 JIVE08                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 JIVE08 135
136 LEE−SERVER                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 LEE−SERVER 136
137 Linnolt−UH−CMB                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 Linnolt−UH−CMB 137
138 NIM2                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 NIM2 138
139 Nano_team                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 Nano_team 139
140 NirBenTal                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 NirBenTal 140
141 Ozkan−Shell                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 Ozkan−Shell 141
142 PHAISTOS                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 PHAISTOS 142
143 POISE                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 POISE 143
144 PZ−UAM                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 PZ−UAM 144
145 ProtAnG                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 ProtAnG 145
146 ProteinShop                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 ProteinShop 146
147 RPFM                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 RPFM 147
148 Sasaki−Cetin−Sasai                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 Sasaki−Cetin−Sasai 148
149 ShakAbInitio                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 ShakAbInitio 149
150 TsaiLab                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 TsaiLab 150
151 UCDavisGenome                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 UCDavisGenome 151
152 YASARA                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 YASARA 152
153 YASARARefine                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 YASARARefine 153
154 Zhou−SPARKS                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 Zhou−SPARKS 154
155 dill_ucsf                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 dill_ucsf 155
156 dill_ucsf_extended                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 dill_ucsf_extended 156
157 igor                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 igor 157
158 jacobson                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 jacobson 158
159 mti                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 mti 159
160 mumssp                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 mumssp 160
161 psiphifoldings                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 psiphifoldings 161
162 rivilo                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 rivilo 162
163 sessions                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 sessions 163
164 taylor                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 taylor 164
165 test_http_server_01                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 test_http_server_01 165
166 tripos_08                   -2.72 -2.62 -2.75                   -3.25 -3.12 -3.20 tripos_08 166