MALIDUP: Manual ALIgnments of DUPlicated domains


INTRODUCTION

MALIDUP is a database of pairwise, structure-base alignments for homologous domains originated from internal duplication.

Reference: H. Cheng, B. Kim, and N. Grishin (2008). MALIDUP: a database of manually constructed structure alignments for duplicated domain pairs. Proteins: Structure, Function, and Bioinformatics. 70:1162-1166

To download the whole database, click here.

EXAMPLE

The two duplicates in glyoxalase I. Each duplicate is colored in rainbow from blue (N-terminus) to red (C-terminus). Corresponding secondary structural elements in the two duplicates are in the same color.

TABLE OF CONTENTS

The table below lists all the duplicated domain pairs in this database. The manual and automatic alignments and superpositions can be viewed by clicking the pair names in the 2nd column.

#PAIRSCOPidRANGESCOP CLASSSCOP FOLDSCOP SUPERFAMILY
1d19hca_d19hca_A1-A135all aMultiheme cytochromesMultiheme cytochromes
d19hca_A169-A292
2d1a4pa_d1a4pa_A1-A45all aEF Hand-likeEF-hand
d1a4pa_A46-A92
3d1a4sa_d1a4sa_A152-A265a/bALDH-likeALDH-like
d1a4sa_A266-A462
4d1a6da1d1a6da1A17-A49,A50-A118all aGroEL equatorial domain-likeGroEL equatorial domain-like
d1a6da1A119-A145,A404-A519
5d1a8l_1d1a8l_1A1-A119a/bThioredoxin foldThioredoxin-like
d1a8l_2A120-A226
6d1af2a1d1af2a1A1-A150a/bCytidine deaminase-likeCytidine deaminase-like
d1af2a2A151-A294
7d1afwb1d1afwb1B25-B295a/bThiolase-likeThiolase-like
d1afwb2B296-B417
8d1ahja_d1ahja_A10-A119a+bNitrile hydratase alpha chainNitrile hydratase alpha chain
d1ahja_A120-A207
9d1ahua1d1ahua1A274-A419a+bFerredoxin-likeFAD-linked oxidases, C-terminal domain
d1ahua1A420-A560
10d1ai3__d1ai3__A3-A220a/bIsocitrate/Isopropylmalate dehydrogenase-likeIsocitrate/Isopropylmalate dehydrogenase-like
d1ai3__A221-A416
11d1aj8a_d1aj8a_A6-A149all aCitrate synthaseCitrate synthase
d1aj8a_A150-A376
12d1ako__d1ako__A1-A102a+bDNase I-likeDNase I-like
d1ako__A103-A268
13d1ala___1d1ala__3-87all aAnnexinAnnexin
d1ala__88-161
14d1ala___2d1ala__88-161all aAnnexinAnnexin
d1ala__162-245
15d1ala___3d1ala__160-245all aAnnexinAnnexin
d1ala__246-318
16d1ala___4d1ala__3-87all aAnnexinAnnexin
d1ala__246-318
17d1anv_2d1anv_2A266-A385smallZn-binding domains of ADDBPZn-binding domains of ADDBP
d1anv_3A386-A529
18d1aoa_1d1aoa_1121-251all aCH domain-likeCalponin-homology domain, CH-domain
d1aoa_2260-375
19d1aora2d1aora2A1-A117a+bAldehyde ferredoxin oxidoreductase, N-terminal domainAldehyde ferredoxin oxidoreductase, N-terminal domain
d1aora2A118-A210
20d1at0__d1at0__A258-A323all bHedgehog/intein (Hint) domainHedgehog/intein (Hint) domain
d1at0__A324-A402
21d1avk_2d1avk_2A9-A96a+bCystatin-likeAmine oxidase N-terminal region
d1avk_3A97-A211
22d1b24a1d1b24a1A7-A103a+bHoming endonuclease-likeHoming endonucleases
d1b24a2A104-A178
23d1b3qa2d1b3qa2A540-A599all bOB-foldCheW-like
d1b3qa2A600-A671
24d1b65a_d1b65a_A9-A193a+bDmpA/ArgJ-likeDmpA/ArgJ-like
d1b65a_A194-A375
25d1b70b2d1b7yb1B1-B38,B152-B190all aPutative DNA-binding domainPutative DNA-binding domain
d1b7yb2B400-B439,B440-B474
26d1b77a1d1b77a1A1-A104a+bDNA clampDNA clamp
d1b77a2A105-A228
27d1ba3__d1ba3__A3-A177multiAcetyl-CoA synthetase-likeAcetyl-CoA synthetase-like
d1ba3__A178-A333
28d1bj5_1_1d1bj5_13-196all aSerum albumin-likeSerum albumin-like
d1bj5_2197-388
29d1bj5_1_2d1bj5_2197-388all aSerum albumin-likeSerum albumin-like
d1bj5_3389-584
30d1bj5_1_3d1bj5_13-196all aSerum albumin-likeSerum albumin-like
d1bj5_3389-584
31d1bmlc1d1bmlc1C12-C148a+bbeta-Grasp (ubiquitin-like)Staphylokinase/streptokinase
d1bmlc2C149-C284
32d1boy_1d1boy_1A5-A106all bImmunoglobulin-like beta-sandwichFibronectin type III
d1boy_2A107-A213
33d1bp1_1d1bp1_1A1-A240a+bAha1/BPI domain-likeBactericidal permeability-increasing protein, BPI
d1bp1_2A241-A456
34d1bwza1d1bwza1A1-A144a+bDiaminopimelate epimerase-likeDiaminopimelate epimerase-like
d1bwza2A145-A274
35d1bxra3d1bxra3A1-A127a/bPreATP-grasp domainPreATP-grasp domain
d1bxra4A556-A676
36d1bxra5d1bxra5A128-A402a+bATP-graspGlutathione synthetase ATP-binding domain-like
d1bxra6A677-A935
37d1c3ga1d1c3ga1A180-A261all bHSP40/DnaJ peptide-binding domainHSP40/DnaJ peptide-binding domain
d1c3ga2A266-A340
38d1c3ma__1d1c3ma_A3-A26,A125-A147all bbeta-Prism IMannose-binding lectins
d1c3ma_A52-A75,A27-A51
39d1c3ma__2d1c3ma_A27-A75all bbeta-Prism IMannose-binding lectins
d1c3ma_A76-A124
40d1c3ma__3d1c3ma_A3-A26,A125-A147all bbeta-Prism IMannose-binding lectins
d1c3ma_A104-A124,A76-A103
41d1c8ua1d1c8ua1A2-A115a+bThioesterase/thiol ester dehydrase-isomeraseThioesterase/thiol ester dehydrase-isomerase
d1c8ua2A116-A286
42d1c8vb_d1c8vb_B83-B194a/bTryptophan synthase beta subunit-like PLP-dependent enzymesTryptophan synthase beta subunit-like PLP-dependent enzymes
d1c8vb_B195-B389
43d1c9ya1d1c9ya1A34-A186a/bATC-likeAspartate/ornithine carbamoyltransferase
d1c9ya2A187-A354
44d1cdwa1d1cdwa1A155-A242a+bTBP-likeTATA-box binding protein-like
d1cdwa2A243-A333
45d1ce8a1d1ce8a1A414-A468all aCarbamoyl phosphate synthetase, large subunit connection domainCarbamoyl phosphate synthetase, large subunit connection domain
d1ce8a1A469-A524
46d1ciy_2_1d1ciy_2A428-A461,A256-A296all bbeta-Prism Idelta-Endotoxin (insectocide), middle domain
d1ciy_2A297-A328,A329-A354
47d1ciy_2_2d1ciy_2A297-A354all bbeta-Prism Idelta-Endotoxin (insectocide), middle domain
d1ciy_2A355-A427
48d1ciy_2_3d1ciy_2A428-A461,A256-A296all bbeta-Prism Idelta-Endotoxin (insectocide), middle domain
d1ciy_2A355-A393,A394-A427
49d1cjda1d1cjda1A15-A244all bNucleoplasmin-like/VP (viral coat and capsid proteins)Group II dsDNA viruses VP
d1cjda2A245-A383
50d1ck7a3d1ck7a3A217-A278smallKringle-likeKringle-like
d1ck7a4A279-A334
51d1ckv__d1ckv__A1-A82a+bMonooxygenase (hydroxylase) regulatory proteinMonooxygenase (hydroxylase) regulatory protein
d1ckv__A83-A141
52d1cpo_1d1cpo_126-106all aEF Hand-likeCloroperoxidase
d1cpo_2129-218
53d1cy8a__1d1cy8a_A189-A214,A474-A514,A515-A538multiProkaryotic type I DNA topoisomeraseProkaryotic type I DNA topoisomerase
d1cy8a_A380-A403,A281-A327,A365-A379
54d1cy8a__2d1cy8a_A215-A264,A458-A473multiProkaryotic type I DNA topoisomeraseProkaryotic type I DNA topoisomerase
d1cy8a_A404-A457,A265-A280
55d1d2oa1d1d2oa1A535-A624all bPrealbumin-likeCna protein B-type domain (Pfam 05738)
d1d2oa2A625-A721
56d1d4va1d1d4va2A105-A144smallTNF receptor-likeTNF receptor-like
d1d4va3A145-A185
57d1d5ya1d1d5ya1A3-A56all aDNA/RNA-binding 3-helical bundleHomeodomain-like
d1d5ya2A57-A121
58d1d8ha_d1d8ha_A299-A413a+bmRNA triphosphatase CET1mRNA triphosphatase CET1
d1d8ha_A425-A500
59d1ddza1d1ddza1A84-A310a/bResolvase-likebeta-carbonic anhydrase, cab
d1ddza2A338-A564
60d1df9c_d1df9c_C501-C538smallKnottins (small inhibitors, toxins, lectins)Bowman-Birk inhibitor, BBI
d1df9c_C539-C572
61d1dfca1d1dfca1A1013-A1137all bbeta-TrefoilActin-crosslinking proteins
d1dfca2A1141-A1259
62d1dgsa1d1dgsa1A427-A501all aSAM domain-likeRuvA domain 2-like
d1dgsa1A502-A576
63d1dkrb1d1dkrb1B1-B164a/bPRTase-likePRTase-like
d1dkrb2B165-B315
64d1dlpa1d1dlpa1A1-A120all bbeta-Prism IIalpha-D-mannose-specific plant lectins
d1dlpa2A121-A235
65d1dmr_2d1dmr_2A377-A500,A85-A145a/bFormate dehydrogenase/DMSO reductase, domains 1-3Formate dehydrogenase/DMSO reductase, domains 1-3
d1dmr_2A146-A258,A259-A376
66d1doza_d1doza_A2-A170a/bChelatase-likeChelatase
d1doza_A171-A310
67d1e0ca1d1e0ca1A1-A135a/bRhodanese/Cell cycle control phosphataseRhodanese/Cell cycle control phosphatase
d1e0ca2A136-A271
68d1e3pa3d1e3pa3A3-A151a+bRibosomal protein S5 domain 2-likeRibosomal protein S5 domain 2-like
d1e3pa4A346-A482
69d1e3pa6d1e3pa6A152-A262a+bRibonuclease PH domain 2-likeRibonuclease PH domain 2-like
d1e3pa7A483-A578
70d1e9hb1d1e9hb1B175-B309all aCyclin-likeCyclin-like
d1e9hb2B310-B432
71d1eb7a1d1eb7a1A27-A168all aCytochrome cCytochrome c
d1eb7a2A181-A304
72d1efdn_d1efdn_N32-N159a/bChelatase-like"Helical backbone" metal receptor
d1efdn_N160-N293
73d1efud4d1efub4B55-B139a+bElongation factor Ts (EF-Ts), dimerisation domainElongation factor Ts (EF-Ts), dimerisation domain
d1efub2B140-B282
74d1ei5a1d1ei5a1A336-A418all bStreptavidin-likeD-aminopeptidase, middle and C-terminal domains
d1ei5a2A419-A520
75d1emn_1d1emn_1A2124-A2164smallKnottins (small inhibitors, toxins, lectins)EGF/Laminin
d1emn_2A2165-A2205
76d1erza_d1erza_A1-A162a+bCarbon-nitrogen hydrolaseCarbon-nitrogen hydrolase
d1erza_A163-A274
77d1exja2d1exja2A121-A200a+bProbable bacterial effector-binding domainProbable bacterial effector-binding domain
d1exja2A201-A277
78d1f0ia1d1f0ia1A6-A254a+bPhospholipase D/nucleasePhospholipase D/nuclease
d1f0ia2A255-A514
79d1f34b_d1f34b_B1-B74a+bPepsin inhibitor-3Pepsin inhibitor-3
d1f34b_B75-B148
80d1f52a2d1f52a2A102-A257a+bGlutamine synthetase/guanido kinaseGlutamine synthetase/guanido kinase
d1f52a2A258-A389
81d1f53a_d1f53a_A1-A47all bgamma-Crystallin-likegamma-Crystallin-like
d1f53a_A48-A84
82d1f9za_d1f9za_A1-A65a+bGlyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenaseGlyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
d1f9za_A66-A126
83d1feca1d1feca1A1-A186a/bFAD/NAD(P)-binding domainFAD/NAD(P)-binding domain
d1feca2A187-A357
84d1fga___1d1fga__A20-A58all bbeta-TrefoilCytokine
d1fga__A59-A101
85d1fga___2d1fga__A59-A101all bbeta-TrefoilCytokine
d1fga__A102-A143
86d1fga___3d1fga__A20-A58all bbeta-TrefoilCytokine
d1fga__A102-A143
87d1fjra_d1fjra_A1-A62all bMethuselah ectodomainMethuselah ectodomain
d1fjra_A121-A188
88d1fo4a5_1d1jrob2B176-B261a+bMolybdenum cofactor-binding domainMolybdenum cofactor-binding domain
d1jrob2B461-B612
89d1fo4a5_2d1jrob2B262-B380a+bMolybdenum cofactor-binding domainMolybdenum cofactor-binding domain
d1jrob2B613-B761
90d1foka1_1d1foka1A4-A143all aDNA/RNA-binding 3-helical bundle"Winged helix" DNA-binding domain
d1foka2A144-A281
91d1foka1_2d1foka2A144-A281all aDNA/RNA-binding 3-helical bundle"Winged helix" DNA-binding domain
d1foka3A287-A386
92d1foka1_3d1foka1A4-A143all aDNA/RNA-binding 3-helical bundle"Winged helix" DNA-binding domain
d1foka3A287-A386
93d1ftra1d1ftra1A1-A124a+bFerredoxin-likeFormylmethanofuran:tetrahydromethanopterin formyltransferase
d1ftra2A144-A296
94d1fwqa_d1hxrb_B9-B77,B117-B123all bMss4-likeMss4-like
d1hxrb_B88-B116,B78-B87
95d1fx8a_d1fx8a_A6-A136membraneAquaporin-likeAquaporin-like
d1fx8a_A137-A259
96d1fyze_d1fyze_E3-E79all aOpen three-helical up-and-down bundleMethane monooxygenase hydrolase, gamma subunit
d1fyze_E80-E169
97d1g1ba_d1g1ba_A1-A99a+bChorismate lyaseChorismate lyase
d1g1ba_A100-A164
98d1g4ma1d1g4ma1A5-A175all bImmunoglobulin-like beta-sandwichE set domains
d1g4ma2A176-A357
99d1g61a__1d1g61a_A2003-A2046a+bPentein, beta/alpha-propellerPentein
d1g61a_A2047-A2089
100d1g61a__2d1g61a_A2090-A2136a+bPentein, beta/alpha-propellerPentein
d1g61a_A2137-A2180
101d1ggua2d1ggua2A516-A629all bImmunoglobulin-like beta-sandwichTransglutaminase, two C-terminal domains
d1ggua3A630-A726
102d1guwa_d1guwa_A19-A80all bSH3-like barrelChromo domain-like
d1dz1a_A115-A171
103d1h16a_d1h16a_A164-A425a/bPFL-like glycyl radical enzymesPFL-like glycyl radical enzymes
d1h16a_A426-A742
104d1h5yb_d1h5yb_B1-B126a/bTIM beta/alpha-barrelRibulose-phoshate binding barrel
d1h5yb_B127-B253
105d1h6ga1d1h6ga1A377-A507all aFour-helical up-and-down bundlealpha-catenin/vinculin
d1h6ga2A508-A631
106d1h6kc1d1n52a1A26-A142all aalpha-alpha superhelixARM repeat
d1n52a3A481-A616
107d1h99a1d1h99a1A54-A168all aPTS-regulatory domain, PRDPTS-regulatory domain, PRD
d1h99a2A169-A275
108d1h9ma1d1h9ma1A1-A72all bOB-foldMOP-like
d1h9ma2A73-A141
109d1hazb_d1hazb_B16-B123all bTrypsin-like serine proteasesTrypsin-like serine proteases
d1hazb_B124-B245
110d1hg7a_d1hg7a_A1000-A1037all bbeta-clipAFP III-like domain (Pfam 01354)
d1hg7a_A1038-A1065
111d1hh2p2d1hh2p2P199-P278a+bAlpha-lytic protease prodomain-likeProkaryotic type KH domain (KH-domain type II)
d1hh2p3P279-P344
112d1hr6a1d1hr6a1A14-A234a+bLuxS/MPP-like metallohydrolaseLuxS/MPP-like metallohydrolase
d1hr6a2A235-A470
113d1hs6a2d1hs6a2A1-A113all bLeukotriene A4 hydrolase N-terminal domainLeukotriene A4 hydrolase N-terminal domain
d1hs6a2A114-A208
114d1hsla_d1hsla_A1-A103a/bPeriplasmic binding protein-like IIPeriplasmic binding protein-like II
d1hsla_A104-A238
115d1hxpa1d1hxpa1A44-A177a+bHIT-likeHIT-like
d1hxpa2A178-A348
116d1i1qa__1d1i1qa_A5-A57,A178-A224a+bADC synthaseADC synthase
d1i1qa_A99-A177,A58-A98
117d1i1qa__2d1i1qa_A99-A177,A58-A98a+bADC synthaseADC synthase
d1i1qa_A258-A310,A466-A516
118d1i1qa__3d1i1qa_A258-A310,A466-A516a+bADC synthaseADC synthase
d1i1qa_A387-A465,A311-A386
119d1i1qa__4d1i1qa_A5-A57,A178-A224a+bADC synthaseADC synthase
d1i1qa_A387-A465,A311-A386
120d1i31a_d1i31a_A159-A285,A393-A435all bCommon fold of diphtheria toxin/transcription factors/cytochrome fSecond domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
d1i31a_A286-A376,A377-A392
121d1i50h_d1i50h_H2-H63all bOB-foldNucleic acid-binding proteins
d1i50h_H76-H146
122d1i7oa1d1i7oa1A1-A218a+bFAHFAH
d1i7oa2A219-A429
123d1i8da1d1i8da1A1-A93all bReductase/isomerase/elongation factor common domainRiboflavin synthase domain-like
d1i8da2A94-A206
124d1idua_d1idua_A3-A239all aAcid phosphatase/Vanadium-dependent haloperoxidaseAcid phosphatase/Vanadium-dependent haloperoxidase
d1idua_A240-A578
125d1iica1d1iica1A34-A226a+bAcyl-CoA N-acyltransferases (Nat)Acyl-CoA N-acyltransferases (Nat)
d1iica2A227-A455
126d1in0b1d1in0a2A101-A163,A2-A9a+bFerredoxin-likeYajQ-like
d1in0a1A10-A89,A90-A100
127d1is2a1d1is2a1A272-A442all aBromodomain-likeAcyl-CoA dehydrogenase C-terminal domain-like
d1is2a2A475-A603
128d1isva1_1d1isva1A304-A353all bbeta-TrefoilRicin B-like lectins
d1isva1A354-A395
129d1isva1_2d1isva1A354-A395all bbeta-TrefoilRicin B-like lectins
d1isva1A396-A436
130d1isva1_3d1isva1A304-A353all bbeta-TrefoilRicin B-like lectins
d1isva1A396-A436
131d1itbb1d1itbb1B6-B101all bImmunoglobulin-like beta-sandwichImmunoglobulin
d1itbb2B102-B204
132d1itkb1d1itkb1B60-B433all aHeme-dependent peroxidasesHeme-dependent peroxidases
d1itkb2B445-B731
133d1iwga1d1iwga1A38-A134a+bFerredoxin-likeMultidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
d1iwga3A567-A673
134d1iwga5d1iwga5A182-A273a+bMultidrug efflux transporter AcrB TolC docking domain; DN and DC subdomainsMultidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
d1iwga6A725-A812
135d1iwga7d1iwga7A7-A37,A331-A498membraneMultidrug efflux transporter AcrB transmembrane domainMultidrug efflux transporter AcrB transmembrane domain
d1iwga8A513-A566,A869-A1036
136d1j6za1d1j6za1A4-A146a/bRibonuclease H-like motifActin-like ATPase domain
d1j6za2A147-A372
137d1j7na1d1j7na1A42-A251a+bZincin-likeMetalloproteases ("zincins"), catalytic domain
d1j7na2A581-A773
138d1jaw_2d1jaw_2A177-A281a+bCreatinase/aminopeptidaseCreatinase/aminopeptidase
d1jaw_2A282-A440
139d1jfla1d1jfla1A1-A115a/bATC-likeAspartate/glutamate racemase
d1jfla2A116-A228
140d1jh7a_d1jh7a_A1-A85a+bLigT-likeLigT-like
d1jh7a_A86-A183
141d1jlya1_1d1jlya1A1-A53all bbeta-TrefoilAgglutinin
d1jlya1A54-A106
142d1jlya1_2d1jlya1A54-A106all bbeta-TrefoilAgglutinin
d1jlya1A107-A153
143d1jlya1_3d1jlya1A1-A53all bbeta-TrefoilAgglutinin
d1jlya1A107-A153
144d1jnxx1d1jnxx1X1649-X1757a/bBRCT domainBRCT domain
d1jnxx2X1758-X1859
145d1jr2a_d1jr2a_A1-A136a/bUroporphyrinogen III synthase (U3S, HemD)Uroporphyrinogen III synthase (U3S, HemD)
d1jr2a_A137-A260
146d1jsg__d1jsg__A4-A57all bOncogene productsOncogene products
d1jsg__A58-A114
147d1jtgb_d1jtgb_B1-B79a+bbeta-lactamase-inhibitor protein, BLIPbeta-lactamase-inhibitor protein, BLIP
d1jtgb_B80-B165
148d1k28d1d1k28d1D32-D111all bPhage tail proteinsPhage tail proteins
d1k28d2D227-D359
149d1k2yx1_1d1k2yx1X5-X152a/bPhosphoglucomutase, first 3 domainsPhosphoglucomutase, first 3 domains
d1k2yx2X153-X258
150d1k2yx1_2d1k2yx2X153-X258a/bPhosphoglucomutase, first 3 domainsPhosphoglucomutase, first 3 domains
d1k2yx3X259-X367
151d1k2yx1_3d1k2yx1X5-X152a/bPhosphoglucomutase, first 3 domainsPhosphoglucomutase, first 3 domains
d1k2yx3X259-X367
152d1k6ka_d1k6ka_A1-A73all aDouble Clp-N motifDouble Clp-N motif
d1k6ka_A74-A142
153d1k8kd1d1k8kd1D13-D122a+bSecretion chaperone-likeArp2/3 complex subunits
d1k8kd2D123-D253
154d1kapp1d1kapp1P253-P333all bSingle-stranded right-handed beta-helixbeta-Roll
d1kapp1P370-P470
155d1kg1a_d1kg1a_A1-A27smallNecrosis inducing protein 1, NIP1Necrosis inducing protein 1, NIP1
d1kg1a_A28-A60
156d1kiza_d1kizb_B55-B169all aTerpenoid synthasesTerpenoid synthases
d1kizb_B170-B307
157d1knca_d1knca_A22-A92all aAhpD-likeAhpD-like
d1knca_A104-A175
158d1kplb_d1kplb_B12-B240membraneClc chloride channelClc chloride channel
d1kplb_B241-B462
159d1kt1a2d1kt1a2A28-A138a+bFKBP-likeFKBP-like
d1kt1a3A139-A253
160d1ky9b1d1ky9b1B268-B349all bPDZ domain-likePDZ domain-like
d1ky9b2B375-B446
161d1kzqa1d1kzqa1A3-A130all bCupredoxin-likeMajor surface antigen p30, SAG1
d1kzqa2A137-A255
162d1lara1d1lara1A1307-A1623a/b(Phosphotyrosine protein) phosphatases II(Phosphotyrosine protein) phosphatases II
d1lara2A1628-A1876
163d1li1a1d1li1a1A5-A114a+bC-type lectin-likeC-type lectin-like
d1li1a2A115-A228
164d1lpba1d1lpba1A6-A42smallKnottins (small inhibitors, toxins, lectins)Colipase-like
d1lpba2A43-A90
165d1m98a1d1m98a1A2-A90all aOrange carotenoid protein, N-terminal domainOrange carotenoid protein, N-terminal domain
d1m98a1A91-A175
166d1m9na2d1m9na2A201-A394a/bCytidine deaminase-likeAICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
d1m9na2A395-A592
167d1m9sa2d1m9sa2A391-A465all bSH3-like barrelGW domain
d1m9sa3A466-A551
168d1moq__d1moq__A243-A430a/bSIS domainSIS domain
d1moq__A431-A608
169d1msva_d1msva_A4-A166a+bS-adenosylmethionine decarboxylaseS-adenosylmethionine decarboxylase
d1msva_A167-A328
170d1n0fg_d1n0fa_A22-A101all bAbrB/MazE/MraZ-likeAbrB/MazE/MraZ-like
d1n0fa_A102-A162
171d1n2ma_d1n2ma_A7-A84,A152-A165a+bPyruvoyl-dependent histidine and arginine decarboxylasesPyruvoyl-dependent histidine and arginine decarboxylases
d1n2ma_A101-A151,A85-A100
172d1n81a_d1n81a_A21-A113all aGametocyte protein Pfg27Gametocyte protein Pfg27
d1n81a_A114-A206
173d1nol_2d1nol_2A154-A250all aDi-copper centre-containing domainDi-copper centre-containing domain
d1nol_2A251-A379
174d1nu9c1d1nu9c1C1-C145all aimmunoglobulin/albumin-binding domain-likeStaphylocoagulase
d1nu9c2C146-C281
175d1o70a1d1o70a1A328-A467all bFAS1 domainFAS1 domain
d1o70a2A468-A623
176d1o9sa2d1o9sa2A194-A288all bbeta-clipSET domain
d1o9sa2A289-A366
177d1ocka_d1ocka_A53-A209a/bAmidase signature (AS) enzymesAmidase signature (AS) enzymes
d1ocka_A218-A408
178d1opma1d1opma1A45-A200all bNucleoplasmin-like/VP (viral coat and capsid proteins)PHM/PNGase F
d1opma2A201-A354
179d1pg6a_d1pg6a_A5-A92all bDouble-stranded beta-helixTRAP-like
d1pg6a_A93-A156
180d1pgja1d1pgja1A179-A324all a6-phosphogluconate dehydrogenase C-terminal domain-like6-phosphogluconate dehydrogenase C-terminal domain-like
d1pgja1A325-A478
181d1pprm1d1pprm1M1-M156all aPeridinin-chlorophyll proteinPeridinin-chlorophyll protein
d1pprm2M157-M312
182d1pv5a_d1pv5a_A145-A261,A1-A26a+bHypothetical protein YwqGHypothetical protein YwqG
d1pv5a_A27-A130,A131-A144
183d1pv6a_d1pw4a_A5-A226membraneMFS general substrate transporterMFS general substrate transporter
d1pw4a_A240-A451
184d1qd1b1d1qd1b1B2002-B2177a+bFerredoxin-likeFormiminotransferase domain of formiminotransferase-cyclodeaminase.
d1qd1b2B2178-B2326
185d1qhga1d1qhga1A1-A84,A85-A108,A206-A318a/bP-loop containing nucleoside triphosphate hydrolasesP-loop containing nucleoside triphosphate hydrolases
d1qhga2A319-A388,A556-A569,A570-A651
186d1qjsa1d1qjsa1A24-A218all b4-bladed beta-propellerHemopexin-like domain
d1qjsa2A223-A435
187d2bs2c1d2bs2c1C1-C103membraneHeme-binding four-helical bundleFumarate reductase respiratory complex transmembrane subunits
d2bs2c1C104-C254
188d1qm4a1d1qm4a1A17-A116a+bS-adenosylmethionine synthetaseS-adenosylmethionine synthetase
d1qm4a2A129-A252
189d1qmea1d1qmea1A632-A692a+bPenicillin-binding protein 2x (pbp-2x), c-terminal domainPenicillin-binding protein 2x (pbp-2x), c-terminal domain
d1qmea2A693-A750
190d1qmha2_1d1qmha2A5-A85a+bIF3-likeEPT/RTPC-like
d1qmha2A86-A179
191d1qmha2_2d1qmha2A5-A85a+bIF3-likeEPT/RTPC-like
d1qmha2A180-A338
192d1qqga1d1qqga1A12-A114all bPH domain-likePH domain-like
d1qqga2A159-A262
193d1qr0a1d1qr0a1A1-A101a+b4'-phosphopantetheinyl transferase4'-phosphopantetheinyl transferase
d1qr0a2A102-A207
194d1qs1a1d1qs1a1A60-A262a+bADP-ribosylationADP-ribosylation
d1qs1a2A263-A461
195d1qtqa1d1qtqa1A339-A442all bRibosomal protein L25-likeRibosomal protein L25-like
d1qtqa1A454-A547
196d1qunb1d1qunb1B1-B158all bCommon fold of diphtheria toxin/transcription factors/cytochrome fBacterial adhesins
d1qunb2B159-B279
197d1r51a1d1r51a1A2-A137a+bT-foldTetrahydrobiopterin biosynthesis enzymes-like
d1r51a2A138-A295
198d1r56e2d1r51a1A2-A136a+bT-foldTetrahydrobiopterin biosynthesis enzymes-like
d1r51a2A137-A295
199d1rhza_d1rhza_A2-A204membranePreprotein translocase SecY subunitPreprotein translocase SecY subunit
d1rhza_A205-A433
200d1rl6a1d1rl6a1A7-A77a+bRibosomal protein L6Ribosomal protein L6
d1rl6a2A78-A170
201d1rwtj_d1rwta_A14-A134membraneChlorophyll a-b binding proteinChlorophyll a-b binding protein
d1rwta_A135-A231
202d1s3na_d1s3na_A1-A81a+bMetallo-dependent phosphatasesMetallo-dependent phosphatases
d1s3na_A82-A141
203d1skz_1d1skz_1A7-A60smallKnottins (small inhibitors, toxins, lectins)Leech antihemostatic proteins
d1skz_2A61-A110
204d1squa_d1squa_A1-A39,A129-A152a+bCheC-likeCheC-like
d1squa_A75-A128,A40-A74
205d1sr9b3d1sr9a3A492-A521,A522-A546a+b2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
d1sr9a3A547-A577,A615-A643
206d1sumb_d1sumb_B2-B113all aSpectrin repeat-likePhoU-like (Pfam 01895)
d1sumb_B114-B225
207d1t0ty_d1t0tv_V6-V133a+bFerredoxin-likeDimeric alpha+beta barrel
d1t0tv_V134-V248
208d1t3ta3d1t3ta3A1-A69a+bPurS-likePurS-like
d1t3ta3A70-A152
209d1tbrr1d1tbrr1R1-R55smallKazal-type serine protease inhibitorsKazal-type serine protease inhibitors
d1tbrr2R56-R103
210d1tdj_2d1tdj_2A336-A423a+bFerredoxin-likeACT-like
d1tdj_3A424-A514
211d1tocr1d1tocr1R1-R59smallBPTI-likeBPTI-like
d1tocr2R60-R119
212d1ttua3d1ttua3A381-A439all bbeta-TrefoilDNA-binding protein LAG-1 (CSL)
d1ttua3A484-A541
213d1utaa_d1utaa_A243-A256,A293-A319a+bFerredoxin-likeSporulation related repeat (SPOR, Pfam 05036)
d1utaa_A282-A292,A257-A281
214d1v9ma_d1v9ma_A78-A178membraneV-type ATP synthase subunit CV-type ATP synthase subunit C
d1v9ma_A186-A280
215d1vjla_d1vjla_A1-A67a+bHypothetical protein TM0160Hypothetical protein TM0160
d1vjla_A68-A150
216d1vk6a1d1vk6a1A1-A125a+bNudixNudix
d1vk6a2A126-A256
217d1vkwa_d1vkwa_A1-A113a+bFMN-dependent nitroreductase-likeFMN-dependent nitroreductase-like
d1vkwa_A114-A206
218d1vl4b_d1vl4a_A2-A86a+bPutative modulator of DNA gyrase, PmbA/TldD (Pfam 01523)Putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523)
d1vl4a_A91-A214
219d1vlba4d1vlba4A350-A608a+bMolybdenum cofactor-binding domainMolybdenum cofactor-binding domain
d1vlba4A609-A907
220d1vlya2d1vlya2A115-A197a+bAminomethyltransferase folate-binding domainAminomethyltransferase folate-binding domain
d1vlya2A26-A114
221d1vmoa__1d1vmoa_A1-A28,A134-A163all bbeta-Prism IVitelline membrane outer protein-I (VMO-I)
d1vmoa_A59-A81,A29-A58
222d1vmoa__2d1vmoa_A29-A81all bbeta-Prism IVitelline membrane outer protein-I (VMO-I)
d1vmoa_A82-A133
223d1vmoa__3d1vmoa_A1-A28,A134-A163all bbeta-Prism IVitelline membrane outer protein-I (VMO-I)
d1vmoa_A112-A133,A82-A111
224d1wba___1d1wba__A2-A66all bbeta-TrefoilSTI-like
d1wba__A67-A126
225d1wba___2d1wba__A67-A126all bbeta-TrefoilSTI-like
d1wba__A127-A172
226d1wba___3d1wba__A2-A66all bbeta-TrefoilSTI-like
d1wba__A127-A172
227d1ycqa_d1ycqa_A21-A65all aSWIB/MDM2 domainSWIB/MDM2 domain
d1ycqa_A66-A108
228d1yua_1d1yua_1A1-A63smallRubredoxin-likeZinc beta-ribbon
d1yua_2A64-A122
229d2bmia_d2bmia_A4-A116a+bMetallo-hydrolase/oxidoreductaseMetallo-hydrolase/oxidoreductase
d2bmia_A117-A231
230d2bn2a_d2bn2a_A1-A51all bNeurophysin IINeurophysin II
d2bn2a_A52-A85
231d2dri__d2dri__A1-A122a/bPeriplasmic binding protein-like IPeriplasmic binding protein-like I
d2dri__A123-A271
232d2g3pa1d2g3pa1A2-A105all bN-terminal domains of the minor coat protein g3pN-terminal domains of the minor coat protein g3p
d2g3pa2A106-A219
233d2gep_3d2gep_3A146-A345a+bSulfite reductase hemoprotein (SiRHP), domains 2 and 4Sulfite reductase hemoprotein (SiRHP), domains 2 and 4
d2gep_4A426-A570
234d2pspa1d2pspa1A2-A54smallTrefoil/Plexin domain-likeTrefoil
d2pspa2A55-A106
235d2up1a1d2up1a1A8-A103a+bFerredoxin-likeRNA-binding domain, RBD
d2up1a2A104-A190
236d3ezma_d3ezma_A1-A50all bCyanovirin-NCyanovirin-N
d3ezma_A51-A101
237d3pep__d3pep__A1-A170all bAcid proteasesAcid proteases
d3pep__A171-A326
238d4csma_d4csma_A150-A243,A1-A25all aChorismate mutase IIChorismate mutase II
d4csma_A26-A130,A131-A149
239d4proc1d4proc1C6-C86a+bAlpha-lytic protease prodomain-likeAlpha-lytic protease prodomain
d4proc2C87-C166
240d7acn_2d7acn_2A62-A192a/bAconitase iron-sulfur domainAconitase iron-sulfur domain
d7acn_2A346-A475
241d8gep_1d8gep_1A81-A145a+bFerredoxin-likeSulfite reductase, domains 1 and 3
d8gep_2A346-A425

Comments and suggestions to: grishin@chop.swmed.edu

Last updated on 2008-02-08