T0517

Targets
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519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
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619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0517

YP_755085.1 from Syntrophomonas wolfei str. Goettingen

Target type: Human/Server

Target sequence:

>T0517 YP_755085.1, Syntrophomonas wolfei str. Goettingen, 159 residues
MENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYACQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: JCSG
PDB ID:
(not yet released)

Jmol of T0517 structure

PyMOL of T0517

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0517A0-1591-159
T0517B3-1593-159
T0517C3-1593-159
T0517D0-1591-159
T0517E3-1593-159
T0517F3-1593-159

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

DsrEF-like fold, 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 43215 (Rossmann-like motif).

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

2qs7_A | PyMOL of 2qs7 A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

DrsE belongs to DsrE/DsrF-like family (PF02635).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0517 T0517 T0517 T0517
First score First Z-score Best score Best Z-score
1 TS299 70.2380 64.9090 0.9895 1.0844 70.2380 64.9090 0.9895 1.0844 TS299 1
2 TS207 69.4270 66.5610 0.9209 1.2233 69.4270 66.5610 0.9209 1.2233 TS207 2
3 TS172 69.4270 59.8730 0.9209 0.6608 72.2930 69.5330 1.1634 1.4733 TS172 3
4 TS077 69.1080 63.0570 0.8939 0.9286 69.1080 63.0570 0.8939 0.9286 TS077 4
5 TS361 68.7900 63.3760 0.8669 0.9554 68.7900 63.3760 0.8669 0.9554 TS361 5
6 TS213 68.7070 63.7190 0.8599 0.9843 68.7900 64.1720 0.8669 1.0224 TS213 6
7 TS275 68.4710 62.9510 0.8400 0.9197 68.4710 62.9510 0.8400 0.9197 TS275 7
8 TS490 68.4710 62.6330 0.8400 0.8930 69.2680 64.3840 0.9074 1.0402 TS490 8
9 TS033 68.1670 62.3890 0.8142 0.8724 68.1670 62.3890 0.8142 0.8724 TS033 9
10 TS419 68.1530 63.8000 0.8130 0.9911 68.1530 63.8000 0.8130 0.9911 TS419 10
11 TS102 68.0000 64.3330 0.8001 1.0359 68.8330 65.0560 0.8706 1.0967 TS102 11
12 TS028 67.9940 60.6690 0.7996 0.7278 67.9940 60.6690 0.7996 0.7278 TS028 12
13 TS276 67.8570 59.9770 0.7880 0.6696 68.3120 63.8540 0.8265 0.9956 TS276 13
14 TS286 67.8570 59.9770 0.7880 0.6696 68.3120 63.8540 0.8265 0.9956 TS286 14
15 TS147 67.8340 63.2700 0.7860 0.9465 70.3820 66.7730 1.0017 1.2411 TS147 15
16 TS114 67.8340 62.4200 0.7860 0.8750 68.3120 63.3230 0.8265 0.9510 TS114 16
17 TS449 67.5170 57.5400 0.7592 0.4646 67.5170 57.5400 0.7592 0.4646 TS449 17
18 TS453 67.5170 57.5400 0.7592 0.4646 67.5170 57.5400 0.7592 0.4646 TS453 18
19 TS346 67.5170 57.5400 0.7592 0.4646 67.5170 57.5400 0.7592 0.4646 TS346 19
20 TS399 67.5160 61.5710 0.7591 0.8036 67.8570 62.6420 0.7880 0.8937 TS399 20
21 TS127 67.5160 58.7050 0.7591 0.5626 68.7900 64.1720 0.8669 1.0224 TS127 21
22 TS429 67.3570 61.7300 0.7457 0.8170 67.9940 62.5270 0.7996 0.8840 TS429 22
23 TS094 67.3570 61.2000 0.7457 0.7724 68.4710 63.8540 0.8400 0.9956 TS094 23
24 TS314 67.3570 61.2000 0.7457 0.7724 67.3570 61.2000 0.7457 0.7724 TS314 24
25 TS149 67.3570 61.2000 0.7457 0.7724 67.3570 61.2000 0.7457 0.7724 TS149 25
26 TS016 67.3470 58.9570 0.7448 0.5838 68.7070 60.0340 0.8599 0.6744 TS016 26
27 TS242 67.3470 58.9570 0.7448 0.5838 68.7070 60.0340 0.8599 0.6744 TS242 27
28 TS110 67.1970 62.1020 0.7321 0.8483 67.1970 62.1020 0.7321 0.8483 TS110 28
29 TS407 67.0380 61.0930 0.7187 0.7634 67.0380 61.0930 0.7187 0.7634 TS407 29
30 TS435 67.0380 58.7580 0.7187 0.5671 67.3570 62.1550 0.7457 0.8528 TS435 30
31 TS403 67.0380 58.2270 0.7187 0.5224 67.8570 61.2240 0.7880 0.7745 TS403 31
32 TS420 66.8370 61.6210 0.7017 0.8078 66.8370 61.6210 0.7017 0.8078 TS420 32
33 TS471 66.8370 61.6210 0.7017 0.8078 66.8370 61.6210 0.7017 0.8078 TS471 33
34 TS113 66.7200 61.7300 0.6918 0.8170 68.3120 63.2170 0.8265 0.9421 TS113 34
35 TS461 66.7200 61.3060 0.6918 0.7814 69.1080 64.6500 0.8939 1.0626 TS461 35
36 TS452 66.5610 62.1020 0.6783 0.8483 66.5610 62.1020 0.6783 0.8483 TS452 36
37 TS056 66.2420 61.0400 0.6513 0.7590 69.1080 63.0570 0.8939 0.9286 TS056 37
38 TS208 66.0830 59.9260 0.6379 0.6653 66.0830 59.9260 0.6379 0.6653 TS208 38
39 TS166 66.0830 58.9700 0.6379 0.5849 66.0830 58.9700 0.6379 0.5849 TS166 39
40 TS302 66.0830 56.9530 0.6379 0.4153 66.0830 56.9530 0.6379 0.4153 TS302 40
41 TS142 66.0830 56.9530 0.6379 0.4153 66.0830 56.9530 0.6379 0.4153 TS142 41
42 TS174 66.0830 50.2120 0.6379 -0.1517 66.0830 50.2120 0.6379 -0.1517 TS174 42
43 TS458 65.9860 55.3290 0.6297 0.2787 66.4010 55.3290 0.6648 0.2787 TS458 43
44 TS319 65.9240 60.7220 0.6244 0.7322 65.9240 60.7220 0.6244 0.7322 TS319 44
45 TS173 65.9240 60.7220 0.6244 0.7322 65.9240 60.7220 0.6244 0.7322 TS173 45
46 TS273 65.9240 60.7220 0.6244 0.7322 65.9240 60.7220 0.6244 0.7322 TS273 46
47 TS074 65.8160 57.7660 0.6153 0.4836 65.8160 57.7660 0.6153 0.4836 TS074 47
48 AL285 65.6050 60.2970 0.5974 0.6965 65.6050 60.2970 0.5974 0.6965 AL285 48
49 TS026 65.5000 61.0560 0.5885 0.7603 67.0380 61.0560 0.7187 0.7603 TS026 49
50 TS481 65.4760 58.7870 0.5865 0.5695 68.1970 60.4880 0.8168 0.7126 TS481 50
51 TS360 65.4460 61.0930 0.5840 0.7634 68.6310 62.7780 0.8535 0.9052 TS360 51
52 TS096 65.4460 60.0320 0.5840 0.6742 67.1970 60.0320 0.7321 0.6742 TS096 52
53 TS386 65.1270 61.6240 0.5570 0.8081 65.1270 61.6240 0.5570 0.8081 TS386 53
54 TS047 65.1270 60.7750 0.5570 0.7367 65.1270 60.7750 0.5570 0.7367 TS047 54
55 TS104 64.9680 61.3060 0.5435 0.7814 64.9680 61.3060 0.5435 0.7814 TS104 55
56 TS380 64.9680 56.1570 0.5435 0.3483 68.1530 60.6160 0.8130 0.7233 TS380 56
57 TS428 64.8330 60.6110 0.5321 0.7229 64.8330 61.2530 0.5321 0.7769 TS428 57
58 TS295 64.8090 62.3670 0.5300 0.8706 64.8090 62.3670 0.5300 0.8706 TS295 58
59 TS037 64.8090 61.0930 0.5300 0.7634 67.6870 62.0180 0.7736 0.8412 TS037 59
60 TS218 64.7960 51.1900 0.5289 -0.0694 64.9660 61.3380 0.5433 0.7840 TS218 60
61 TS035 64.6500 61.2530 0.5166 0.7769 65.1270 61.2530 0.5570 0.7769 TS035 61
62 TS001 64.6500 59.1300 0.5166 0.5983 64.6500 59.1300 0.5166 0.5983 TS001 62
63 TS171 64.4900 60.0320 0.5031 0.6742 64.4900 60.0320 0.5031 0.6742 TS171 63
64 TS418 64.4560 59.4100 0.5002 0.6219 67.9940 61.9430 0.7996 0.8349 TS418 64
65 TS236 64.4560 59.4100 0.5002 0.6219 65.1360 61.0540 0.5577 0.7602 TS236 65
66 TS457 64.1720 51.1150 0.4761 -0.0757 65.1360 56.6890 0.5577 0.3930 TS457 66
67 TS088 64.0130 59.8200 0.4627 0.6564 64.3310 60.5100 0.4896 0.7144 TS088 67
68 TS245 64.0130 54.5650 0.4627 0.2144 64.0130 54.5650 0.4627 0.2144 TS245 68
69 TS470 64.0000 59.2780 0.4616 0.6108 67.9940 61.2000 0.7996 0.7724 TS470 69
70 TS436 63.8540 57.4310 0.4492 0.4555 63.8540 57.4310 0.4492 0.4555 TS436 70
71 TS402 63.5350 54.5120 0.4222 0.2100 65.3330 58.2220 0.5744 0.5220 TS402 71
72 TS300 63.3330 56.6670 0.4051 0.3912 64.6500 61.2530 0.5166 0.7769 TS300 72
73 TS311 63.0950 56.1790 0.3850 0.3502 65.4460 61.0930 0.5840 0.7634 TS311 73
74 TS476 63.0570 58.3860 0.3818 0.5358 63.0570 58.3860 0.3818 0.5358 TS476 74
75 TS307 63.0570 56.0510 0.3818 0.3394 63.5350 57.3780 0.4222 0.4510 TS307 75
76 TS297 62.8980 61.3060 0.3683 0.7814 62.8980 61.3060 0.3683 0.7814 TS297 76
77 TS165 62.4200 57.0060 0.3279 0.4197 64.8090 57.2190 0.5300 0.4376 TS165 77
78 TS103 62.2450 55.3290 0.3131 0.2787 63.6050 57.8230 0.4282 0.4884 TS103 78
79 TS215 62.0750 57.0290 0.2987 0.4216 63.0950 59.0140 0.3850 0.5886 TS215 79
80 TS080 62.0750 57.0290 0.2987 0.4216 62.0750 57.0290 0.2987 0.4216 TS080 80
81 TS278 61.9050 55.8960 0.2843 0.3264 61.9050 55.8960 0.2843 0.3264 TS278 81
82 TS400 61.8330 51.9440 0.2782 -0.0060 63.3760 56.5560 0.4088 0.3819 TS400 82
83 TS119 61.6240 57.5900 0.2605 0.4688 62.7390 58.1740 0.3549 0.5179 TS119 83
84 TS324 60.8330 58.7220 0.1936 0.5640 68.4710 60.6110 0.8400 0.7229 TS324 84
85 TS477 60.8280 55.7320 0.1932 0.3126 65.7230 57.6960 0.6074 0.4777 TS477 85
86 TS366 60.6690 53.2380 0.1797 0.1028 60.6690 55.2550 0.1797 0.2724 TS366 86
87 TS192 60.5100 58.4930 0.1662 0.5448 60.5100 58.4930 0.1662 0.5448 TS192 87
88 TS063 60.3500 53.0250 0.1527 0.0849 61.1460 56.5820 0.2201 0.3840 TS063 88
89 TS018 60.2040 53.3450 0.1403 0.1118 60.2040 54.8300 0.1403 0.2367 TS018 89
90 TS002 59.5540 54.5650 0.0853 0.2144 62.2610 55.1590 0.3144 0.2644 TS002 90
91 TS391 59.5540 52.9720 0.0853 0.0804 59.5540 52.9720 0.0853 0.0804 TS391 91
92 TS321 59.3330 52.6670 0.0666 0.0548 62.7390 60.6160 0.3549 0.7233 TS321 92
93 TS228 58.9170 53.7150 0.0314 0.1429 59.6410 53.7150 0.0927 0.1429 TS228 93
94 TS409 58.7580 54.0870 0.0180 0.1742 58.7580 54.0870 0.0180 0.1742 TS409 94
95 TS253 58.7580 51.2210 0.0180 -0.0668 60.0320 55.9980 0.1258 0.3349 TS253 95
96 TS424 58.6670 48.7780 0.0103 -0.2723 62.2610 57.5900 0.3144 0.4688 TS424 96
97 TS184 58.5990 53.5030 0.0045 0.1251 58.5990 53.5030 0.0045 0.1251 TS184 97
98 TS214 58.5990 49.2570 0.0045 -0.2320 58.7580 51.6450 0.0180 -0.0312 TS214 98
99 TS186 58.5990 49.2570 0.0045 -0.2320 58.7580 51.6450 0.0180 -0.0312 TS186 99
100 TS408 58.4390 52.8130 -0.0090 0.0671 63.6940 60.6160 0.4357 0.7233 TS408 100
101 TS395 58.3330 53.1180 -0.0180 0.0927 62.2610 55.8920 0.3144 0.3260 TS395 101
102 TS330 58.1630 53.8550 -0.0324 0.1547 58.1630 53.8550 -0.0324 0.1547 TS330 102
103 TS206 57.0060 49.6820 -0.1303 -0.1963 57.0060 49.6820 -0.1303 -0.1963 TS206 103
104 AL396 56.6330 50.9640 -0.1619 -0.0884 56.6330 50.9640 -0.1619 -0.0884 AL396 104
105 TS345 55.6120 49.0360 -0.2483 -0.2506 57.3250 50.9550 -0.1033 -0.0892 TS345 105
106 TS365 55.5000 46.1670 -0.2577 -0.4919 61.0000 55.3080 0.2077 0.2769 TS365 106
107 TS291 55.4140 51.9110 -0.2650 -0.0088 65.8160 60.2610 0.6153 0.6935 TS291 107
108 TS244 54.7770 51.5390 -0.3189 -0.0401 61.3060 55.2550 0.2336 0.2724 TS244 108
109 TS296 53.9810 51.7520 -0.3863 -0.0222 58.5000 51.7520 -0.0039 -0.0222 TS296 109
110 TS301 52.3810 48.5260 -0.5217 -0.2935 68.3120 63.2170 0.8265 0.9421 TS301 110
111 TS439 52.1670 45.9440 -0.5398 -0.5106 52.1670 45.9440 -0.5398 -0.5106 TS439 111
112 TS055 49.1500 40.9860 -0.7951 -0.9276 56.9730 48.6960 -0.1331 -0.2792 TS055 112
113 TS450 47.6110 41.8790 -0.9254 -0.8525 47.6110 41.8790 -0.9254 -0.8525 TS450 113
114 TS117 47.5000 41.2780 -0.9348 -0.9031 50.1670 45.7540 -0.7091 -0.5266 TS117 114
115 TS304 46.4970 41.1890 -1.0196 -0.9106 49.3330 42.9770 -0.7796 -0.7602 TS304 115
116 TS423 45.8600 38.2700 -1.0735 -1.1561 45.8600 38.2700 -1.0735 -1.1561 TS423 116
117 TS045 45.4250 36.6010 -1.1104 -1.2964 45.4250 36.6010 -1.1104 -1.2964 TS045 117
118 TS382 39.8090 30.1490 -1.5856 -1.8391 49.6820 44.2680 -0.7501 -0.6516 TS382 118
119 TS020 39.6670 31.2220 -1.5976 -1.7488 39.6670 31.9000 -1.5976 -1.6918 TS020 119
120 TS289 35.3740 29.2520 -1.9609 -1.9145 35.3740 29.2520 -1.9609 -1.9145 TS289 120
121 TS083 35.1910 27.2290 -1.9764 -2.0846 35.1910 27.2290 -1.9764 -2.0846 TS083 121
122 TS279 31.0460 30.6100 -2.3272 -1.8003 31.0460 30.6100 -2.3272 -1.8003 TS279 122
123 TS044 29.4590 23.1950 -2.4615 -2.4239 29.4590 23.5670 -2.4615 -2.3926 TS044 123
124 TS333 29.0850 28.6490 -2.4932 -1.9652 44.9350 41.1220 -1.1518 -0.9162 TS333 124
125 TS042 23.6670 16.2220 -2.9517 -3.0104 24.0200 20.0980 -2.9218 -2.6844 TS042 125
126 TS355 22.4520 19.2680 -3.0545 -2.7542 22.4520 19.2680 -3.0545 -2.7542 TS355 126
127 TS264 22.2220 18.5190 -3.0740 -2.8172 22.2220 18.5190 -3.0740 -2.8172 TS264 127
128 TS084 22.0000 18.4440 -3.0927 -2.8235 22.0000 18.4440 -3.0927 -2.8235 TS084 128
129 TS316 21.7320 20.7520 -3.1154 -2.6294 24.6730 20.7520 -2.8665 -2.6294 TS316 129
130 TS153 21.2420 18.5190 -3.1569 -2.8172 21.2420 18.5190 -3.1569 -2.8172 TS153 130
131 TS257 20.9150 18.1920 -3.1846 -2.8447 22.5490 19.3360 -3.0463 -2.7485 TS257 131
132 TS350 18.4640 14.5420 -3.3920 -3.1517 23.3660 20.4250 -2.9771 -2.6569 TS350 132
133 TS189 16.8300 14.1070 -3.5303 -3.1882 16.8300 14.1070 -3.5303 -3.1882 TS189 133
134 TS029 15.4460 14.2780 -3.6474 -3.1739 16.9930 14.2780 -3.5165 -3.1739 TS029 134
135 RANDOM 14.74 12.26 -3.7071 -3.3436 14.74 12.26 -3.7071 -3.3436 RANDOM 135
136 TS014 14.1720 12.7920 -3.7552 -3.2988 14.1720 12.7920 -3.7552 -3.2988 TS014 136
137 TS229 13.0720 11.0570 -3.8483 -3.4448 15.4460 13.6050 -3.6474 -3.2305 TS229 137
138 TS129 11.5650 9.8070 -3.9758 -3.5499 11.5650 9.8070 -3.9758 -3.5499 TS129 138
139 TS009             -3.7071 -3.3436             -3.7071 -3.3436 TS009 139
140 TS039             -3.7071 -3.3436             -3.7071 -3.3436 TS039 140
141 TS060             -3.7071 -3.3436             -3.7071 -3.3436 TS060 141
142 TS061             -3.7071 -3.3436             -3.7071 -3.3436 TS061 142
143 TS075             -3.7071 -3.3436             -3.7071 -3.3436 TS075 143
144 TS086             -3.7071 -3.3436             -3.7071 -3.3436 TS086 144
145 TS105             -3.7071 -3.3436             -3.7071 -3.3436 TS105 145
146 TS140             -3.7071 -3.3436             -3.7071 -3.3436 TS140 146
147 TS150             -3.7071 -3.3436             -3.7071 -3.3436 TS150 147
148 TS152             -3.7071 -3.3436             -3.7071 -3.3436 TS152 148
149 TS154             -3.7071 -3.3436             -3.7071 -3.3436 TS154 149
150 TS160             -3.7071 -3.3436             -3.7071 -3.3436 TS160 150
151 TS170             -3.7071 -3.3436             -3.7071 -3.3436 TS170 151
152 TS178             -3.7071 -3.3436             -3.7071 -3.3436 TS178 152
153 TS180             -3.7071 -3.3436             -3.7071 -3.3436 TS180 153
154 TS182             -3.7071 -3.3436             -3.7071 -3.3436 TS182 154
155 TS199             -3.7071 -3.3436             -3.7071 -3.3436 TS199 155
156 TS200             -3.7071 -3.3436             -3.7071 -3.3436 TS200 156
157 TS220             -3.7071 -3.3436             -3.7071 -3.3436 TS220 157
158 TS240             -3.7071 -3.3436             -3.7071 -3.3436 TS240 158
159 TS248             -3.7071 -3.3436             -3.7071 -3.3436 TS248 159
160 TS250             -3.7071 -3.3436             -3.7071 -3.3436 TS250 160
161 TS254             -3.7071 -3.3436             -4.9545 -4.3747 TS254 161
162 TS261             -3.7071 -3.3436             -3.7071 -3.3436 TS261 162
163 TS263             -3.7071 -3.3436             -3.7071 -3.3436 TS263 163
164 TS269             -3.7071 -3.3436             -3.7071 -3.3436 TS269 164
165 TS282             -3.7071 -3.3436             -3.7071 -3.3436 TS282 165
166 TS322             -3.7071 -3.3436             -3.7071 -3.3436 TS322 166
167 TS328             -3.7071 -3.3436             -3.7071 -3.3436 TS328 167
168 TS331             -3.7071 -3.3436             -3.7071 -3.3436 TS331 168
169 TS336             -3.7071 -3.3436             -3.7071 -3.3436 TS336 169
170 TS347             -3.7071 -3.3436             -3.7071 -3.3436 TS347 170
171 TS353             -3.7071 -3.3436             -3.7071 -3.3436 TS353 171
172 TS358             -3.7071 -3.3436             -3.7071 -3.3436 TS358 172
173 TS362             -3.7071 -3.3436             -3.7071 -3.3436 TS362 173
174 TS373             -3.7071 -3.3436             -3.7071 -3.3436 TS373 174
175 TS433             -3.7071 -3.3436             -3.7071 -3.3436 TS433 175
176 TS444             -3.7071 -3.3436             -3.7071 -3.3436 TS444 176
177 TS447             -3.7071 -3.3436             -3.7071 -3.3436 TS447 177
178 TS484             -3.7071 -3.3436             -3.7071 -3.3436 TS484 178