T0540

Targets
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539 540 541 542
543 544 545 546
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551 552 553 554
555 556 557 558
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567 568 569 570
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579 580 581 582
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635 636 637 638
639 640 641 642
643      

T0540

FAIM-NTD from Human

Target type: Human/Server

Target sequence:

>T0540 FAIM-NTD, Human, 90 residues
MTDLVAVWDVALSDGVHKIEFEHGTTSGKRVVYVDGKEEIRKEWMFKLVGKETFYVGAAKTKATINIDAISGFAYEYTLEINGKSLKKYM

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0,  HorAServer

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: Non-SGI research Centers and others
PDB ID:
(not yet released)

Jmol of T0540 structure

PyMOL of T0540

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0540A1-901-90

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Six or Seven strands in two antiparallel sheets (123+456), face to face. some similairty to the Glycosyl hydrolase family 7 catalytic core.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

2kd2_A | PyMOL of 2kd2 A, This templated is the structure representative of Pfam (PF06905, to which the target sequence is assigned.

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

Fas apoptotic inhibitory molecule (FAIM1) (PF06905).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0540 T0540 T0540 T0540
First score First Z-score Best score Best Z-score
1 TS400 69.7220 64.5370 1.6827 1.8764 69.7220 64.5370 1.6827 1.8764 TS400 1
2 TS192 68.6110 61.5740 1.6176 1.6836 68.6110 61.5740 1.6176 1.6836 TS192 2
3 TS407 66.3890 59.1670 1.4874 1.5269 66.3890 59.1670 1.4874 1.5269 TS407 3
4 TS399 66.3890 57.5000 1.4874 1.4184 66.3890 57.5000 1.4874 1.4184 TS399 4
5 TS094 65.8330 58.0560 1.4548 1.4546 65.8330 58.0560 1.4548 1.4546 TS094 5
6 TS477 65.8330 58.0560 1.4548 1.4546 65.8330 58.0560 1.4548 1.4546 TS477 6
7 TS435 65.8330 58.0560 1.4548 1.4546 65.8330 58.0560 1.4548 1.4546 TS435 7
8 TS060 65.8330 58.0560 1.4548 1.4546 65.8330 58.0560 1.4548 1.4546 TS060 8
9 TS302 65.8330 54.7220 1.4548 1.2376 65.8330 54.7220 1.4548 1.2376 TS302 9
10 TS142 65.8330 54.7220 1.4548 1.2376 65.8330 54.7220 1.4548 1.2376 TS142 10
11 TS088 65.5560 57.4070 1.4386 1.4123 65.5560 59.5370 1.4386 1.5510 TS088 11
12 TS324 65.5560 57.4070 1.4386 1.4123 65.5560 57.4070 1.4386 1.4123 TS324 12
13 TS240 63.8890 59.4440 1.3409 1.5449 63.8890 59.4440 1.3409 1.5449 TS240 13
14 TS386 63.8890 52.1300 1.3409 1.0688 69.7220 61.5740 1.6827 1.6836 TS386 14
15 TS104 63.6110 57.6850 1.3246 1.4304 63.6110 57.6850 1.3246 1.4304 TS104 15
16 TS461 63.3330 57.5930 1.3084 1.4244 64.1670 57.5930 1.3572 1.4244 TS461 16
17 TS242 63.0560 57.8700 1.2921 1.4425 63.3330 57.8700 1.3084 1.4425 TS242 17
18 TS490 63.0560 54.1670 1.2921 1.2014 65.0000 57.5930 1.4060 1.4244 TS490 18
19 TS409 63.0560 51.3890 1.2921 1.0206 63.0560 51.3890 1.2921 1.0206 TS409 19
20 TS127 62.5000 57.3150 1.2596 1.4063 62.5000 57.3150 1.2596 1.4063 TS127 20
21 TS016 62.5000 56.0190 1.2596 1.3220 62.5000 58.0560 1.2596 1.4546 TS016 21
22 TS033 62.5000 55.0930 1.2596 1.2617 63.0560 55.0930 1.2921 1.2617 TS033 22
23 TS449 62.5000 52.5000 1.2596 1.0929 62.5000 52.5000 1.2596 1.0929 TS449 23
24 TS453 62.5000 52.5000 1.2596 1.0929 62.5000 52.5000 1.2596 1.0929 TS453 24
25 TS346 62.5000 52.5000 1.2596 1.0929 62.5000 52.5000 1.2596 1.0929 TS346 25
26 TS319 62.2220 58.8890 1.2433 1.5088 62.2220 58.8890 1.2433 1.5088 TS319 26
27 TS056 62.2220 58.8890 1.2433 1.5088 62.2220 58.8890 1.2433 1.5088 TS056 27
28 TS366 62.2220 53.8890 1.2433 1.1833 62.2220 53.8890 1.2433 1.1833 TS366 28
29 TS458 61.9440 57.1300 1.2270 1.3943 62.7780 58.8890 1.2758 1.5088 TS458 29
30 TS361 61.6670 57.4070 1.2108 1.4123 61.9440 59.6300 1.2270 1.5570 TS361 30
31 TS114 61.6670 57.4070 1.2108 1.4123 61.6670 57.4070 1.2108 1.4123 TS114 31
32 TS307 61.6670 51.7590 1.2108 1.0447 62.7780 51.7590 1.2758 1.0447 TS307 32
33 TS110 61.3890 57.5000 1.1945 1.4184 61.3890 57.5000 1.1945 1.4184 TS110 33
34 TS275 61.3890 56.9440 1.1945 1.3822 61.3890 56.9440 1.1945 1.3822 TS275 34
35 TS429 60.8330 57.6850 1.1619 1.4304 62.2220 57.6850 1.2433 1.4304 TS429 35
36 TS077 60.8330 56.9440 1.1619 1.3822 60.8330 56.9440 1.1619 1.3822 TS077 36
37 AL285 60.5560 57.2220 1.1457 1.4003 60.5560 57.2220 1.1457 1.4003 AL285 37
38 TS276 60.5560 52.7780 1.1457 1.1110 60.5560 52.7780 1.1457 1.1110 TS276 38
39 TS286 60.5560 52.7780 1.1457 1.1110 60.5560 52.7780 1.1457 1.1110 TS286 39
40 TS174 60.2780 56.5740 1.1294 1.3581 60.2780 56.5740 1.1294 1.3581 TS174 40
41 TS117 60.2780 53.4260 1.1294 1.1532 60.2780 53.4260 1.1294 1.1532 TS117 41
42 TS439 60.2780 53.2410 1.1294 1.1412 60.2780 53.2410 1.1294 1.1412 TS439 42
43 TS208 60.2780 47.5000 1.1294 0.7675 60.5560 51.9440 1.1457 1.0567 TS208 43
44 TS063 60.0000 54.0740 1.1131 1.1954 60.0000 54.0740 1.1131 1.1954 TS063 44
45 TS419 60.0000 44.8150 1.1131 0.5927 60.0000 44.9070 1.1131 0.5987 TS419 45
46 TS273 60.0000 44.8150 1.1131 0.5927 62.2220 58.8890 1.2433 1.5088 TS273 46
47 TS001 60.0000 44.8150 1.1131 0.5927 62.2220 58.8890 1.2433 1.5088 TS001 47
48 TS296 60.0000 44.8150 1.1131 0.5927 62.2220 58.8890 1.2433 1.5088 TS296 48
49 TS113 59.7220 57.1300 1.0968 1.3943 65.5560 57.1300 1.4386 1.3943 TS113 49
50 TS300 59.4440 54.6300 1.0805 1.2316 62.7780 55.5560 1.2758 1.2918 TS300 50
51 TS428 59.4440 54.6300 1.0805 1.2316 62.7780 55.5560 1.2758 1.2918 TS428 51
52 TS102 59.4440 52.7780 1.0805 1.1110 60.8330 56.2040 1.1619 1.3340 TS102 52
53 TS470 59.1670 56.3890 1.0643 1.3461 65.8330 58.0560 1.4548 1.4546 TS470 53
54 TS236 59.1670 56.3890 1.0643 1.3461 59.1670 56.3890 1.0643 1.3461 TS236 54
55 TS391 59.1670 52.6850 1.0643 1.1050 59.1670 52.6850 1.0643 1.1050 TS391 55
56 TS213 58.8890 53.8890 1.0480 1.1833 59.7220 54.5370 1.0968 1.2255 TS213 56
57 AL396 58.6110 43.0560 1.0317 0.4782 58.6110 43.0560 1.0317 0.4782 AL396 57
58 TS171 58.0560 54.5370 0.9992 1.2255 58.0560 54.5370 0.9992 1.2255 TS171 58
59 TS452 58.0560 53.7960 0.9992 1.1773 58.0560 54.1670 0.9992 1.2014 TS452 59
60 TS147 57.7780 55.1850 0.9829 1.2677 60.2780 57.6850 1.1294 1.4304 TS147 60
61 TS321 57.7780 53.5190 0.9829 1.1592 65.5560 60.0930 1.4386 1.5872 TS321 61
62 TS360 57.5000 52.3150 0.9666 1.0809 57.7780 52.4070 0.9829 1.0869 TS360 62
63 TS301 57.2220 51.8520 0.9503 1.0507 62.2220 58.8890 1.2433 1.5088 TS301 63
64 TS380 56.9440 48.9810 0.9341 0.8639 58.6110 51.3890 1.0317 1.0206 TS380 64
65 TS037 56.9440 48.9810 0.9341 0.8639 61.9440 57.0370 1.2270 1.3882 TS037 65
66 TS045 56.3890 51.0190 0.9015 0.9965 56.3890 51.0190 0.9015 0.9965 TS045 66
67 TS172 56.3890 50.8330 0.9015 0.9844 68.0560 63.4260 1.5851 1.8041 TS172 67
68 TS402 56.3890 49.3520 0.9015 0.8880 64.7220 57.8700 1.3897 1.4425 TS402 68
69 TS096 55.5560 48.7040 0.8527 0.8458 63.0560 58.4260 1.2921 1.4787 TS096 69
70 TS009 55.5560 40.7410 0.8527 0.3275 55.5560 40.7410 0.8527 0.3275 TS009 70
71 TS353 55.0000 50.3700 0.8202 0.9543 60.0000 54.4440 1.1131 1.2195 TS353 71
72 TS423 55.0000 45.7410 0.8202 0.6530 59.4440 54.6300 1.0805 1.2316 TS423 72
73 TS420 54.7220 40.6480 0.8039 0.3215 54.7220 40.6480 0.8039 0.3215 TS420 73
74 TS471 54.7220 40.6480 0.8039 0.3215 54.7220 40.6480 0.8039 0.3215 TS471 74
75 TS253 53.6110 45.4630 0.7388 0.6349 57.2220 47.4070 0.9503 0.7614 TS253 75
76 TS029 53.3330 49.6300 0.7225 0.9061 53.3330 49.6300 0.7225 0.9061 TS029 76
77 TS297 52.7780 43.3330 0.6900 0.4962 65.0000 60.3700 1.4060 1.6052 TS297 77
78 TS457 51.3890 42.6850 0.6086 0.4540 52.7780 44.2590 0.6900 0.5565 TS457 78
79 TS061 50.8330 42.3150 0.5760 0.4300 50.8330 42.3150 0.5760 0.4300 TS061 79
80 TS395 50.2780 44.3520 0.5435 0.5626 70.8330 59.1670 1.7478 1.5269 TS395 80
81 TS170 50.0000 43.1480 0.5272 0.4842 56.9440 51.7590 0.9341 1.0447 TS170 81
82 TS103 49.7220 44.9070 0.5109 0.5987 57.2220 51.8520 0.9503 1.0507 TS103 82
83 TS299 49.1670 39.3520 0.4784 0.2371 55.5560 45.1850 0.8527 0.6168 TS299 83
84 TS403 48.3330 40.5560 0.4296 0.3155 48.6110 41.3890 0.4459 0.3697 TS403 84
85 TS002 48.3330 38.7040 0.4296 0.1949 48.3330 38.7040 0.4296 0.1949 TS002 85
86 TS408 46.9440 37.6850 0.3482 0.1286 58.3330 53.1480 1.0154 1.1351 TS408 86
87 TS166 45.0000 38.7040 0.2343 0.1949 59.1670 53.4260 1.0643 1.1532 TS166 87
88 TS316 44.1670 37.8700 0.1855 0.1406 47.2220 37.8700 0.3645 0.1406 TS316 88
89 TS418 43.0560 39.1670 0.1204 0.2250 69.7220 59.7220 1.6827 1.5630 TS418 89
90 TS424 41.9440 36.5740 0.0553 0.0563 58.6110 55.4630 1.0317 1.2858 TS424 90
91 TS173 40.2780 37.1300 -0.0423 0.0925 56.3890 52.1300 0.9015 1.0688 TS173 91
92 TS042 40.0000 36.2960 -0.0586 0.0382 40.0000 36.2960 -0.0586 0.0382 TS042 92
93 TS481 39.4440 32.7780 -0.0912 -0.1908 48.0560 41.2040 0.4133 0.3576 TS481 93
94 TS200 39.1670 32.6850 -0.1074 -0.1969 39.1670 32.6850 -0.1074 -0.1969 TS200 94
95 TS047 38.8890 30.5560 -0.1237 -0.3355 38.8890 30.5560 -0.1237 -0.3355 TS047 95
96 TS484 38.8890 29.2590 -0.1237 -0.4199 48.6110 38.7960 0.4459 0.2009 TS484 96
97 TS450 38.6110 34.5370 -0.1400 -0.0763 38.6110 34.5370 -0.1400 -0.0763 TS450 97
98 TS153 37.5000 32.3150 -0.2051 -0.2210 37.5000 32.3150 -0.2051 -0.2210 TS153 98
99 TS244 35.8330 30.8330 -0.3028 -0.3174 57.2220 51.8520 0.9503 1.0507 TS244 99
100 TS055 35.5560 32.9630 -0.3190 -0.1788 56.6670 50.7410 0.9178 0.9784 TS055 100
101 TS119 35.0000 32.2220 -0.3516 -0.2270 42.2220 36.8520 0.0716 0.0744 TS119 101
102 TS345 34.1670 30.6480 -0.4004 -0.3295 34.1670 30.6480 -0.4004 -0.3295 TS345 102
103 TS365 33.3330 28.1480 -0.4492 -0.4922 37.7780 32.2220 -0.1888 -0.2270 TS365 103
104 TS295 31.6670 29.4440 -0.5468 -0.4078 46.3890 38.7040 0.3157 0.1949 TS295 104
105 TS080 31.3890 24.7220 -0.5631 -0.7152 33.8890 27.2220 -0.4166 -0.5525 TS080 105
106 TS214 30.8330 24.8150 -0.5957 -0.7091 37.2220 29.6300 -0.2214 -0.3957 TS214 106
107 TS083 28.3330 21.2960 -0.7421 -0.9382 36.9440 30.0000 -0.2377 -0.3716 TS083 107
108 TS257 28.0560 25.2780 -0.7584 -0.6790 37.5000 33.0560 -0.2051 -0.1727 TS257 108
109 TS269 27.5000 26.1110 -0.7910 -0.6248 30.2780 29.3520 -0.6282 -0.4138 TS269 109
110 TS152 27.5000 26.1110 -0.7910 -0.6248 30.2780 29.3520 -0.6282 -0.4138 TS152 110
111 TS206 27.5000 22.3150 -0.7910 -0.8719 27.5000 22.3150 -0.7910 -0.8719 TS206 111
112 TS382 27.2220 23.7040 -0.8072 -0.7815 56.9440 49.9070 0.9341 0.9241 TS382 112
113 TS140 26.6670 25.2780 -0.8398 -0.6790 32.5000 30.0930 -0.4980 -0.3656 TS140 113
114 TS291 26.1110 23.7960 -0.8723 -0.7755 36.1110 33.1480 -0.2865 -0.1667 TS291 114
115 TS207 25.8330 22.4070 -0.8886 -0.8659 31.6670 24.6300 -0.5468 -0.7212 TS207 115
116 TS039 25.5560 20.9260 -0.9048 -0.9623 30.2780 28.8890 -0.6282 -0.4440 TS039 116
117 TS086 25.5560 20.9260 -0.9048 -0.9623 30.0000 28.8890 -0.6445 -0.4440 TS086 117
118 TS215 25.5560 20.3700 -0.9048 -0.9985 28.0560 22.8700 -0.7584 -0.8358 TS215 118
119 TS075 25.0000 20.3700 -0.9374 -0.9985 31.6670 24.3520 -0.5468 -0.7393 TS075 119
120 TS350 24.7220 22.6850 -0.9537 -0.8478 26.1110 24.6300 -0.8723 -0.7212 TS350 120
121 TS014 24.4440 22.4070 -0.9700 -0.8659 30.2780 26.5740 -0.6282 -0.5947 TS014 121
122 TS248 24.4440 18.9810 -0.9700 -1.0889 24.7220 21.5740 -0.9537 -0.9201 TS248 122
123 TS322 24.1670 21.5740 -0.9862 -0.9201 30.0000 28.3330 -0.6445 -0.4802 TS322 123
124 TS328 23.8890 21.1110 -1.0025 -0.9503 23.8890 21.1110 -1.0025 -0.9503 TS328 124
125 TS282 23.8890 18.7040 -1.0025 -1.1069 30.8330 27.4070 -0.5957 -0.5404 TS282 125
126 RANDOM 23.67 19.72 -1.0153 -1.0408 23.67 19.72 -1.0153 -1.0408 RANDOM 126
127 TS433 23.6110 21.7590 -1.0188 -0.9081 39.4440 35.3700 -0.0912 -0.0221 TS433 127
128 TS218 23.3330 20.0000 -1.0351 -1.0226 33.6110 29.5370 -0.4329 -0.4018 TS218 128
129 TS220 23.0560 22.6850 -1.0513 -0.8478 41.3890 35.8330 0.0227 0.0080 TS220 129
130 TS447 23.0560 22.6850 -1.0513 -0.8478 41.3890 35.8330 0.0227 0.0080 TS447 130
131 TS331 22.7780 18.4260 -1.0676 -1.1250 39.4440 36.6670 -0.0912 0.0623 TS331 131
132 TS444 21.9440 17.6850 -1.1165 -1.1733 21.9440 17.6850 -1.1165 -1.1733 TS444 132
133 TS028 21.3890 18.7960 -1.1490 -1.1009 24.4440 20.1850 -0.9700 -1.0105 TS028 133
134 TS355 21.1110 20.0000 -1.1653 -1.0226 35.8330 30.6480 -0.3028 -0.3295 TS355 134
135 TS373 21.1110 18.8890 -1.1653 -1.0949 26.1110 23.6110 -0.8723 -0.7875 TS373 135
136 TS149 21.1110 17.7780 -1.1653 -1.1672 21.1110 17.7780 -1.1653 -1.1672 TS149 136
137 TS278 20.8330 16.2040 -1.1815 -1.2697 20.8330 16.2040 -1.1815 -1.2697 TS278 137
138 TS304 20.5560 17.9630 -1.1978 -1.1552 21.6670 19.4440 -1.1327 -1.0588 TS304 138
139 TS182 20.2780 18.3330 -1.2141 -1.1311 24.7220 18.7960 -0.9537 -1.1009 TS182 139
140 TS186 20.0000 17.8700 -1.2303 -1.1612 31.1110 24.6300 -0.5794 -0.7212 TS186 140
141 TS084 19.7220 17.5930 -1.2466 -1.1792 35.8330 32.6850 -0.3028 -0.1969 TS084 141
142 TS311 19.1670 15.4630 -1.2791 -1.3179 24.1670 21.0190 -0.9862 -0.9562 TS311 142
143 TS229 18.6110 16.2040 -1.3117 -1.2697 21.1110 18.7040 -1.1653 -1.1069 TS229 143
144 TS476 18.6110 16.1110 -1.3117 -1.2757 18.6110 16.1110 -1.3117 -1.2757 TS476 144
145 TS020 18.3330 16.1110 -1.3280 -1.2757 33.0560 25.2780 -0.4654 -0.6790 TS020 145
146 TS289 18.0560 15.2780 -1.3442 -1.3299 18.0560 15.2780 -1.3442 -1.3299 TS289 146
147 TS264 17.7780 17.2220 -1.3605 -1.2034 17.7780 17.2220 -1.3605 -1.2034 TS264 147
148 TS279 17.5000 15.9260 -1.3768 -1.2878 18.0560 15.9260 -1.3442 -1.2878 TS279 148
149 TS165 17.5000 14.5370 -1.3768 -1.3782 20.0000 18.3330 -1.2303 -1.1311 TS165 149
150 TS250 16.1110 12.7780 -1.4582 -1.4927 18.6110 13.7960 -1.3117 -1.4264 TS250 150
151 TS436 15.5560 13.5190 -1.4907 -1.4444 16.6670 14.0740 -1.4256 -1.4083 TS436 151
152 TS018 15.2780 13.7960 -1.5070 -1.4264 22.7780 20.5560 -1.0676 -0.9864 TS018 152
153 TS314 15.2780 11.6670 -1.5070 -1.5650 40.0000 35.7410 -0.0586 0.0020 TS314 153
154 TS026             -1.0153 -1.0408             -1.0153 -1.0408 TS026 154
155 TS035             -1.0153 -1.0408             -1.0153 -1.0408 TS035 155
156 TS044             -1.0153 -1.0408             -1.0153 -1.0408 TS044 156
157 TS074             -1.0153 -1.0408             -1.0153 -1.0408 TS074 157
158 TS105             -1.0153 -1.0408             -1.0153 -1.0408 TS105 158
159 TS129             -1.0153 -1.0408             -1.0153 -1.0408 TS129 159
160 TS150             -1.0153 -1.0408             -1.0153 -1.0408 TS150 160
161 TS154             -1.0153 -1.0408             -1.0153 -1.0408 TS154 161
162 TS160             -1.0153 -1.0408             -1.0153 -1.0408 TS160 162
163 TS178             -1.0153 -1.0408             -1.0153 -1.0408 TS178 163
164 TS180             -1.0153 -1.0408             -1.0153 -1.0408 TS180 164
165 TS184             -1.0153 -1.0408             -1.0153 -1.0408 TS184 165
166 TS189             -1.0153 -1.0408             -1.0153 -1.0408 TS189 166
167 TS199             -1.0153 -1.0408             -1.0153 -1.0408 TS199 167
168 TS228             -1.0153 -1.0408             -1.0153 -1.0408 TS228 168
169 TS245             -1.0153 -1.0408             -1.0153 -1.0408 TS245 169
170 TS254             -1.0153 -1.0408             -1.0153 -1.0408 TS254 170
171 TS261             -1.0153 -1.0408             -1.0153 -1.0408 TS261 171
172 TS263             -1.0153 -1.0408             -1.0153 -1.0408 TS263 172
173 TS330             -1.0153 -1.0408             -1.0153 -1.0408 TS330 173
174 TS333             -1.0153 -1.0408             -1.0153 -1.0408 TS333 174
175 TS336             -1.0153 -1.0408             -1.0153 -1.0408 TS336 175
176 TS347             -1.0153 -1.0408             -1.0153 -1.0408 TS347 176
177 TS358             -1.0153 -1.0408             -1.0153 -1.0408 TS358 177
178 TS362             -1.0153 -1.0408             -1.0153 -1.0408 TS362 178