T0616

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0616

Ryanodine receptor from Bacteroides thetaiotaomicron

Target type: Human/Server

Target sequence:

>T0616 Ryanodine receptor, Bacteroides thetaiotaomicron, 103 residues
SNAMKENKLDYIPEPMDLSLVDLPESLIQLSERIAENVHEVWAKARIDEGWTYGEKRDDIHKKHPCLVPYDELPEEEKEYDRNTAMNTIKMVKKLGFRIEKED

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: MCSG
PDB ID: 3nrt

Jmol of T0616 structure : 3nrt

PyMOL of T0616

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0616A7-9910-102
T0616B7-10010-103
T0616C2-1005-103
T0616D7-9910-102
T0616E3-1006-103
T0616F7-10010-103

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

I think this protein might not be easy to prediction. Sequence alignments are short. It might be a protein with helix-turn-helix motif.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: FM  alignment.

Closest templates:

Template manually selected by shuoyong:

2cto_A | PyMOL of 2cto A, This template is selected from pdb hits which ranked at 2th with longest alignment.

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

RyR domain; InterPro: IPR003032 This domain is called RyR for Ryanodine receptor (PF02026).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0616 T0616 T0616 T0616
First score First Z-score Best score Best Z-score
1 TS153 42.4730 35.1250 2.4928 1.5551 42.4730 35.1250 2.4928 1.5551 TS153 1
2 TS080 41.1290 31.2720 2.2302 0.8120 41.1290 32.6160 2.2302 1.0712 TS080 2
3 TS119 41.1290 31.2720 2.2302 0.8120 41.1290 32.0790 2.2302 0.9677 TS119 3
4 TS215 37.9030 27.6880 1.5999 0.1209 37.9030 32.6160 1.5999 1.0712 TS215 4
5 TS173 37.6340 35.1250 1.5473 1.5551 40.0540 37.7240 2.0201 2.0564 TS173 5
6 TS002 37.3660 26.7920 1.4949 -0.0519 37.3660 27.3300 1.4949 0.0518 TS002 6
7 TS273 37.0970 33.7810 1.4424 1.2959 40.5910 37.5450 2.1251 2.0218 TS273 7
8 TS083 36.8280 31.2720 1.3898 0.8120 37.3660 32.8850 1.4949 1.1231 TS083 8
9 TS016 36.4360 33.4220 1.3132 1.2267 36.7020 34.0430 1.3652 1.3465 TS016 9
10 TS458 36.2900 35.2150 1.2847 1.5725 36.2900 35.2150 1.2847 1.5725 TS458 10
11 TS192 36.1700 34.3970 1.2612 1.4147 36.1700 34.3970 1.2612 1.4147 TS192 11
12 TS321 36.0220 35.1250 1.2323 1.5551 36.0220 35.1250 1.2323 1.5551 TS321 12
13 TS114 36.0220 34.4090 1.2323 1.4170 36.0220 34.4090 1.2323 1.4170 TS114 13
14 TS104 35.7530 33.0650 1.1798 1.1578 36.0220 33.0650 1.2323 1.1578 TS104 14
15 TS047 35.6380 33.3330 1.1573 1.2095 35.6380 33.3330 1.1573 1.2095 TS047 15
16 TS418 35.4840 34.6770 1.1272 1.4687 38.2980 36.8790 1.6770 1.8934 TS418 16
17 TS297 35.4840 33.5130 1.1272 1.2442 40.3230 37.4550 2.0727 2.0045 TS297 17
18 TS365 35.4840 32.2580 1.1272 1.0022 35.4840 32.2580 1.1272 1.0022 TS365 18
19 TS045 35.2150 33.2440 1.0746 1.1924 43.5480 37.8140 2.7028 2.0737 TS045 19
20 TS063 35.2150 31.7200 1.0746 0.8984 35.2150 31.7200 1.0746 0.8984 TS063 20
21 TS380 34.9460 33.7810 1.0221 1.2959 35.7530 33.7810 1.1798 1.2959 TS380 21
22 TS110 34.9460 33.7810 1.0221 1.2959 37.0970 35.1250 1.4424 1.5551 TS110 22
23 TS113 34.9460 33.6020 1.0221 1.2614 36.8280 33.6020 1.3898 1.2614 TS113 23
24 TS172 34.9460 33.3330 1.0221 1.2095 34.9460 33.3330 1.0221 1.2095 TS172 24
25 TS423 34.9460 32.6160 1.0221 1.0712 37.0970 34.9460 1.4424 1.5206 TS423 25
26 TS490 34.6770 33.6920 0.9695 1.2788 35.4840 33.6920 1.1272 1.2788 TS490 26
27 TS096 34.6770 32.5270 0.9695 1.0541 34.9460 32.9750 1.0221 1.1405 TS096 27
28 TS470 34.6770 31.9000 0.9695 0.9332 36.0220 34.4090 1.2323 1.4170 TS470 28
29 TS033 34.6770 31.9000 0.9695 0.9332 34.6770 31.9000 0.9695 0.9332 TS033 29
30 TS103 34.6770 30.5560 0.9695 0.6740 34.6770 31.8100 0.9695 0.9158 TS103 30
31 TS291 34.6770 28.8530 0.9695 0.3455 38.4410 35.0360 1.7050 1.5380 TS291 31
32 TS037 34.6770 26.8820 0.9695 -0.0346 36.5590 34.0500 1.3372 1.3478 TS037 32
33 TS174 34.4090 33.6020 0.9172 1.2614 35.3720 33.6020 1.1053 1.2614 TS174 33
34 TS166 34.4090 30.8240 0.9172 0.7257 34.4090 30.8240 0.9172 0.7257 TS166 34
35 TS429 34.1400 32.5270 0.8646 1.0541 34.1400 32.5270 0.8646 1.0541 TS429 35
36 TS075 34.1400 32.1680 0.8646 0.9848 35.7530 33.0650 1.1798 1.1578 TS075 36
37 TS407 34.1400 32.1680 0.8646 0.9848 34.1400 32.9750 0.8646 1.1405 TS407 37
38 TS286 34.1400 32.1680 0.8646 0.9848 35.7530 33.0650 1.1798 1.1578 TS286 38
39 TS361 34.1400 31.9890 0.8646 0.9503 38.1720 32.8850 1.6524 1.1231 TS361 39
40 TS382 33.8710 30.6450 0.8120 0.6911 33.8710 32.5270 0.8120 1.0541 TS382 40
41 TS020 33.6020 32.1680 0.7595 0.9848 33.6020 32.1680 0.7595 0.9848 TS020 41
42 TS242 33.6020 31.8100 0.7595 0.9158 33.6020 31.8100 0.7595 0.9158 TS242 42
43 TS102 33.3330 32.4370 0.7069 1.0367 33.3330 32.4370 0.7069 1.0367 TS102 43
44 TS299 33.3330 32.2580 0.7069 1.0022 33.3330 32.2580 0.7069 1.0022 TS299 44
45 TS295 33.2450 30.8510 0.6897 0.7309 35.7530 34.6770 1.1798 1.4687 TS295 45
46 TS386 33.0650 30.3760 0.6545 0.6393 34.6770 32.3480 0.9695 1.0196 TS386 46
47 TS360 33.0650 26.7030 0.6545 -0.0691 33.0650 28.9430 0.6545 0.3629 TS360 47
48 TS088 32.7960 32.2580 0.6020 1.0022 35.4840 33.6920 1.1272 1.2788 TS088 48
49 TS042 32.7960 30.1080 0.6020 0.5876 34.9460 34.7670 1.0221 1.4861 TS042 49
50 TS307 32.7960 25.4480 0.6020 -0.3111 32.7960 28.7630 0.6020 0.3282 TS307 50
51 TS395 32.5270 30.5560 0.5494 0.6740 37.9030 33.6020 1.5999 1.2614 TS395 51
52 TS061 32.5270 29.8390 0.5494 0.5357 32.5270 30.1080 0.5494 0.5876 TS061 52
53 TS035 32.5270 29.0320 0.5494 0.3801 32.5270 29.0320 0.5494 0.3801 TS035 53
54 TS094 32.5270 29.0320 0.5494 0.3801 34.9460 33.7810 1.0221 1.2959 TS094 54
55 TS240 32.5270 29.0320 0.5494 0.3801 32.5270 29.0320 0.5494 0.3801 TS240 55
56 TS428 32.5270 29.0320 0.5494 0.3801 36.0220 35.1250 1.2323 1.5551 TS428 56
57 TS060 32.5270 29.0320 0.5494 0.3801 36.0220 35.1250 1.2323 1.5551 TS060 57
58 TS355 32.5270 28.2260 0.5494 0.2246 33.6020 32.7060 0.7595 1.0886 TS355 58
59 TS424 32.4470 28.7230 0.5338 0.3205 36.0220 31.5410 1.2323 0.8639 TS424 59
60 TS149 32.2580 29.7490 0.4969 0.5183 32.2580 29.7490 0.4969 0.5183 TS149 60
61 TS324 31.9890 30.6450 0.4443 0.6911 31.9890 31.4520 0.4443 0.8468 TS324 61
62 TS400 31.7200 27.9570 0.3917 0.1727 34.4090 31.7200 0.9172 0.8984 TS400 62
63 TS311 31.7200 26.8820 0.3917 -0.0346 33.0650 32.0790 0.6545 0.9677 TS311 63
64 TS170 31.7200 24.8210 0.3917 -0.4321 35.2150 34.8570 1.0746 1.5034 TS170 64
65 TS300 31.6490 30.7620 0.3779 0.7137 40.0540 37.7240 2.0201 2.0564 TS300 65
66 TS001 31.6490 30.7620 0.3779 0.7137 40.5910 37.5450 2.1251 2.0218 TS001 66
67 TS484 31.1830 28.4950 0.2868 0.2765 37.3660 37.1860 1.4949 1.9526 TS484 67
68 TS477 30.9140 28.7630 0.2343 0.3282 33.5110 31.9150 0.7417 0.9361 TS477 68
69 TS409 30.3760 29.0320 0.1291 0.3801 30.3760 29.0320 0.1291 0.3801 TS409 69
70 TS408 30.3760 26.9710 0.1291 -0.0174 36.0220 34.2290 1.2323 1.3823 TS408 70
71 TS147 30.1080 28.6740 0.0768 0.3110 32.5270 29.1220 0.5494 0.3974 TS147 71
72 TS056 30.1080 28.3150 0.0768 0.2418 30.3760 28.3150 0.1291 0.2418 TS056 72
73 TS026 29.8390 27.1510 0.0242 0.0173 31.7200 28.1030 0.3917 0.2009 TS026 73
74 TS077 29.5700 29.0320 -0.0284 0.3801 34.9460 32.9750 1.0221 1.1405 TS077 74
75 TS435 29.5700 29.0320 -0.0284 0.3801 38.4410 29.0320 1.7050 0.3801 TS435 75
76 TS366 29.5700 27.9570 -0.0284 0.1727 33.3330 29.8390 0.7069 0.5357 TS366 76
77 TS165 29.3010 29.1220 -0.0809 0.3974 37.2340 32.1680 1.4691 0.9848 TS165 77
78 TS353 29.3010 27.6880 -0.0809 0.1209 31.1830 29.3910 0.2868 0.4493 TS353 78
79 TS450 29.3010 25.8960 -0.0809 -0.2247 29.3010 25.8960 -0.0809 -0.2247 TS450 79
80 TS319 29.0320 27.5990 -0.1335 0.1037 30.6450 29.0320 0.1817 0.3801 TS319 80
81 TS275 29.0320 27.5990 -0.1335 0.1037 31.6490 30.0530 0.3779 0.5770 TS275 81
82 TS481 28.7630 27.3300 -0.1860 0.0518 31.3830 27.3940 0.3259 0.0642 TS481 82
83 TS055 28.7630 27.1510 -0.1860 0.0173 30.6450 27.1510 0.1817 0.0173 TS055 83
84 TS322 28.7630 26.4340 -0.1860 -0.1210 29.5700 27.5090 -0.0284 0.0863 TS322 84
85 TS276 28.7630 25.3580 -0.1860 -0.3285 34.6770 29.4800 0.9695 0.4665 TS276 85
86 TS399 28.4950 25.0000 -0.2384 -0.3975 34.9460 33.7810 1.0221 1.2959 TS399 86
87 TS152 27.9570 26.1650 -0.3435 -0.1729 36.0220 33.1540 1.2323 1.1750 TS152 87
88 TS452 27.9570 24.5520 -0.3435 -0.4839 28.2260 25.3580 -0.2910 -0.3285 TS452 88
89 TS302 27.9570 23.6560 -0.3435 -0.6567 29.0320 24.5520 -0.1335 -0.4839 TS302 89
90 TS142 27.9570 23.6560 -0.3435 -0.6567 29.0320 24.5520 -0.1335 -0.4839 TS142 90
91 TS220 27.9570 23.6560 -0.3435 -0.6567 31.4520 28.9430 0.3394 0.3629 TS220 91
92 TS447 27.9570 23.6560 -0.3435 -0.6567 31.4520 28.9430 0.3394 0.3629 TS447 92
93 TS127 27.9260 23.6700 -0.3496 -0.6540 32.2580 30.3760 0.4969 0.6393 TS127 93
94 TS316 27.6880 24.1940 -0.3961 -0.5530 32.2580 28.1360 0.4969 0.2073 TS316 94
95 TS207 27.4190 26.1650 -0.4486 -0.1729 28.2260 26.9710 -0.2910 -0.0174 TS207 95
96 TS314 27.4190 24.9100 -0.4486 -0.4149 31.1830 30.4660 0.2868 0.6566 TS314 96
97 TS403 27.4190 24.5520 -0.4486 -0.4839 27.4190 24.5520 -0.4486 -0.4839 TS403 97
98 TS248 27.4190 22.9390 -0.4486 -0.7950 27.4190 25.1790 -0.4486 -0.3630 TS248 98
99 TS186 27.1510 23.5660 -0.5010 -0.6741 28.7630 26.9710 -0.1860 -0.0174 TS186 99
100 TS391 27.1510 19.9820 -0.5010 -1.3653 27.1510 19.9820 -0.5010 -1.3653 TS391 100
101 TS214 26.8820 22.2220 -0.5536 -0.9333 29.5700 27.4190 -0.0284 0.0690 TS214 101
102 TS333 26.6130 25.8960 -0.6061 -0.2247 29.8390 29.3010 0.0242 0.4319 TS333 102
103 TS018 26.6130 24.1040 -0.6061 -0.5703 26.6130 24.1040 -0.6061 -0.5703 TS018 103
104 TS208 26.3440 23.2970 -0.6587 -0.7260 32.2580 28.8530 0.4969 0.3455 TS208 104
105 TS213 26.0750 25.1790 -0.7113 -0.3630 27.4190 26.3440 -0.4486 -0.1383 TS213 105
106 TS336 26.0750 24.7310 -0.7113 -0.4494 30.3760 30.1970 0.1291 0.6047 TS336 106
107 TS028 26.0750 18.0110 -0.7113 -1.7454 26.6130 25.0000 -0.6061 -0.3975 TS028 107
108 TS257 25.2690 20.9680 -0.8687 -1.1751 32.7960 29.3910 0.6020 0.4493 TS257 108
109 TS476 25.0000 23.0290 -0.9213 -0.7777 25.0000 23.0290 -0.9213 -0.7777 TS476 109
110 TS084 24.7310 22.0430 -0.9739 -0.9678 27.9570 26.3440 -0.3435 -0.1383 TS084 110
111 TS419 24.4620 22.3120 -1.0264 -0.9159 36.0220 35.1250 1.2323 1.5551 TS419 111
112 TS282 24.1940 22.7600 -1.0788 -0.8295 31.7200 29.5700 0.3917 0.4838 TS282 112
113 TS304 24.1940 19.1760 -1.0788 -1.5207 30.1080 26.3440 0.0768 -0.1383 TS304 113
114 TS218 23.6700 19.9470 -1.1812 -1.3721 25.5380 24.4620 -0.8162 -0.5013 TS218 114
115 TS236 23.6560 20.4300 -1.1839 -1.2789 36.0220 34.4090 1.2323 1.4170 TS236 115
116 TS420 23.4040 22.1630 -1.2331 -0.9447 23.4040 22.1630 -1.2331 -0.9447 TS420 116
117 TS449 23.3870 22.8490 -1.2365 -0.8124 23.3870 22.8490 -1.2365 -0.8124 TS449 117
118 TS453 23.3870 22.8490 -1.2365 -0.8124 23.3870 22.8490 -1.2365 -0.8124 TS453 118
119 TS346 23.3870 22.8490 -1.2365 -0.8124 23.3870 22.8490 -1.2365 -0.8124 TS346 119
120 TS444 23.3870 18.3690 -1.2365 -1.6764 30.1080 26.1650 0.0768 -0.1729 TS444 120
121 TS461 22.8720 19.4150 -1.3371 -1.4747 29.0320 24.1940 -0.1335 -0.5530 TS461 121
122 TS229 22.6060 18.6170 -1.3891 -1.6286 27.6880 23.3870 -0.3961 -0.7086 TS229 122
123 TS182 22.6060 17.4650 -1.3891 -1.8507 27.1510 26.2540 -0.5010 -0.1557 TS182 123
124 AL285 22.3120 22.3120 -1.4465 -0.9159 22.3120 22.3120 -1.4465 -0.9159 AL285 124
125 TS328 22.3120 20.1610 -1.4465 -1.3308 22.3120 20.1610 -1.4465 -1.3308 TS328 125
126 TS402 22.3120 19.8030 -1.4465 -1.3998 34.4090 32.7960 0.9172 1.1060 TS402 126
127 TS253 22.3120 19.8030 -1.4465 -1.3998 30.8510 26.5960 0.2219 -0.0897 TS253 127
128 TS244 22.0740 21.8090 -1.4930 -1.0130 28.4950 27.4190 -0.2384 0.0690 TS244 128
129 TS457 22.0430 17.9210 -1.4991 -1.7628 33.6020 32.7060 0.7595 1.0886 TS457 129
130 TS029 21.7740 18.8170 -1.5516 -1.5900 21.7740 18.8170 -1.5516 -1.5900 TS029 130
131 TS264 21.5430 14.0960 -1.5968 -2.5005 29.5210 27.9260 -0.0379 0.1668 TS264 131
132 TS350 21.5050 20.8780 -1.6042 -1.1925 27.1510 23.8350 -0.5010 -0.6222 TS350 132
133 TS345 21.5050 19.5340 -1.6042 -1.4517 22.5810 20.5200 -1.3940 -1.2615 TS345 133
134 TS200 21.2770 19.4150 -1.6487 -1.4747 23.6700 21.1880 -1.1812 -1.1327 TS200 134
135 RANDOM 21.27 19.00 -1.6501 -1.5547 21.27 19.00 -1.6501 -1.5547 RANDOM 135
136 TS301 20.9680 20.9680 -1.7091 -1.1751 28.4950 26.1650 -0.2384 -0.1729 TS301 136
137 TS278 19.8920 19.1760 -1.9194 -1.5207 28.2260 25.3580 -0.2910 -0.3285 TS278 137
138 TS471 19.6240 16.9350 -1.9717 -1.9529 19.6240 16.9350 -1.9717 -1.9529 TS471 138
139 TS044 19.1490 15.7800 -2.0645 -2.1757 19.1490 15.7800 -2.0645 -2.1757 TS044 139
140 TS206 19.0860 17.9210 -2.0769 -1.7628 19.0860 17.9210 -2.0769 -1.7628 TS206 140
141 TS250 18.5480 13.3510 -2.1820 -2.6441 22.8490 17.0250 -1.3416 -1.9356 TS250 141
142 TS129 18.0110 14.4270 -2.2869 -2.4366 18.2800 15.4260 -2.2343 -2.2440 TS129 142
143 TS171 17.2040 14.8750 -2.4446 -2.3502 17.2040 14.8750 -2.4446 -2.3502 TS171 143
144 TS436 11.1700 9.2200 -3.6236 -3.4408 11.1700 9.2200 -3.6236 -3.4408 TS436 144
145 TS117 7.7960 7.7960 -4.2828 -3.7155 28.2260 27.6880 -0.2910 0.1209 TS117 145
146 TS296 7.7960 7.6160 -4.2828 -3.7502 29.0320 27.5990 -0.1335 0.1037 TS296 146
147 AL396             -1.6501 -1.5547             -1.5516 -1.1580 AL396 147
148 TS009             -1.6501 -1.5547             -1.6501 -1.5547 TS009 148
149 TS014             -1.6501 -1.5547             -1.6501 -1.5547 TS014 149
150 TS039             -1.6501 -1.5547             -1.6501 -1.5547 TS039 150
151 TS074             -1.6501 -1.5547             -1.6501 -1.5547 TS074 151
152 TS086             -1.6501 -1.5547             -1.6501 -1.5547 TS086 152
153 TS105             -1.6501 -1.5547             -1.6501 -1.5547 TS105 153
154 TS140             -1.6501 -1.5547             -1.6501 -1.5547 TS140 154
155 TS150             -1.6501 -1.5547             -1.6501 -1.5547 TS150 155
156 TS154             -1.6501 -1.5547             -1.6501 -1.5547 TS154 156
157 TS160             -1.6501 -1.5547             -1.6501 -1.5547 TS160 157
158 TS178             -1.6501 -1.5547             -1.6501 -1.5547 TS178 158
159 TS180             -1.6501 -1.5547             -1.6501 -1.5547 TS180 159
160 TS184             -1.6501 -1.5547             -1.6501 -1.5547 TS184 160
161 TS189             -1.6501 -1.5547             -1.6501 -1.5547 TS189 161
162 TS199             -1.6501 -1.5547             -1.6501 -1.5547 TS199 162
163 TS228             -1.6501 -1.5547             -1.6501 -1.5547 TS228 163
164 TS245             -1.6501 -1.5547             -1.6501 -1.5547 TS245 164
165 TS254             -1.6501 -1.5547             -1.6501 -1.5547 TS254 165
166 TS261             -1.6501 -1.5547             -1.6501 -1.5547 TS261 166
167 TS263             -1.6501 -1.5547             -1.6501 -1.5547 TS263 167
168 TS269             -1.6501 -1.5547             -1.6501 -1.5547 TS269 168
169 TS279             -1.6501 -1.5547             -1.6501 -1.5547 TS279 169
170 TS289             -1.6501 -1.5547             -0.0379 -0.1754 TS289 170
171 TS330             -1.6501 -1.5547             -1.6501 -1.5547 TS330 171
172 TS331             -1.6501 -1.5547             -1.6501 -1.5547 TS331 172
173 TS347             -1.6501 -1.5547             -1.6501 -1.5547 TS347 173
174 TS358             -1.6501 -1.5547             -1.6501 -1.5547 TS358 174
175 TS362             -1.6501 -1.5547             -1.6501 -1.5547 TS362 175
176 TS373             -1.6501 -1.5547             -1.6501 -1.5547 TS373 176
177 TS433             -1.6501 -1.5547             -1.6501 -1.5547 TS433 177
178 TS439             -1.6501 -1.5547             -1.6501 -1.5547 TS439 178