T0560

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0560

BtR375 from unknown species

Target type: Server only

Target sequence:

>T0560 BtR375, unknown species, 74 residues
MDKKIVGANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIYNEGHFDFSFG

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: NMR
Determined by: NESG
PDB ID: 2l02

Jmol of T0560 structure : 2l02

PyMOL of T0560

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0560A1-821-69

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

This protein looks like a homolog of T0559. Winged helix DNA-binding domain contains a small beta-sheet (wing)

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

2heo_A | PyMOL of 2heo A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

DUF2582: Protein of unknown function (PF10771).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0560 T0560 T0560 T0560
First score First Z-score Best score Best Z-score
1 TS173 92.3910 91.9080 1.5358 1.7408 92.3910 91.9080 1.5358 1.7408 TS173 1
2 TS088 92.0290 91.5460 1.5132 1.7207 92.0290 91.5460 1.5132 1.7207 TS088 2
3 TS273 92.0290 91.5460 1.5132 1.7207 92.0290 91.5460 1.5132 1.7207 TS273 3
4 TS104 90.5800 89.6140 1.4230 1.6134 90.5800 89.6140 1.4230 1.6134 TS104 4
5 TS490 89.4930 89.4930 1.3554 1.6067 89.4930 89.4930 1.3554 1.6067 TS490 5
6 TS361 88.7680 88.2850 1.3103 1.5397 91.6670 91.6670 1.4907 1.7274 TS361 6
7 TS470 88.7680 87.5600 1.3103 1.4994 92.3910 91.9080 1.5358 1.7408 TS470 7
8 TS060 88.7680 87.5600 1.3103 1.4994 88.7680 87.5600 1.3103 1.4994 TS060 8
9 TS321 88.7680 85.6280 1.3103 1.3922 88.7680 85.6280 1.3103 1.3922 TS321 9
10 TS037 88.7680 85.6280 1.3103 1.3922 92.0290 91.5460 1.5132 1.7207 TS037 10
11 TS428 87.3190 85.6280 1.2201 1.3922 88.7680 87.5600 1.3103 1.4994 TS428 11
12 TS395 87.3190 84.1790 1.2201 1.3117 88.0430 87.8020 1.2652 1.5129 TS395 12
13 TS094 86.9570 83.5750 1.1976 1.2782 86.9570 83.5750 1.1976 1.2782 TS094 13
14 TS102 86.9570 83.5750 1.1976 1.2782 86.9570 83.5750 1.1976 1.2782 TS102 14
15 TS407 86.9570 83.5750 1.1976 1.2782 87.3190 86.3530 1.2201 1.4324 TS407 15
16 TS253 86.5940 84.4200 1.1750 1.3251 87.3190 86.3530 1.2201 1.4324 TS253 16
17 TS103 85.8700 84.6620 1.1299 1.3385 87.3190 84.6620 1.2201 1.3385 TS103 17
18 TS457 85.1450 83.9370 1.0848 1.2983 86.2320 83.9370 1.1524 1.2983 TS457 18
19 TS380 84.7830 76.3290 1.0623 0.8759 86.5940 84.6620 1.1750 1.3385 TS380 19
20 TS113 84.4200 83.6960 1.0397 1.2849 89.1300 88.4060 1.3328 1.5464 TS113 20
21 TS240 84.0580 79.2270 1.0171 1.0368 84.0580 79.2270 1.0171 1.0368 TS240 21
22 TS218 83.3330 80.4350 0.9720 1.1039 84.0580 80.4350 1.0171 1.1039 TS218 22
23 TS429 82.6090 76.5700 0.9270 0.8893 86.9570 86.2320 1.1976 1.4257 TS429 23
24 TS002 82.2460 81.7630 0.9044 1.1776 82.2460 81.7630 0.9044 1.1776 TS002 24
25 TS244 81.5220 75.2420 0.8593 0.8156 81.5220 75.2420 0.8593 0.8156 TS244 25
26 TS174 80.7970 67.7540 0.8142 0.3999 80.7970 67.7540 0.8142 0.3999 TS174 26
27 TS028 80.0720 77.1740 0.7691 0.9228 80.0720 77.1740 0.7691 0.9228 TS028 27
28 TS001 80.0720 75.7250 0.7691 0.8424 80.0720 75.7250 0.7691 0.8424 TS001 28
29 TS452 78.9860 75.6040 0.7015 0.8357 78.9860 75.6040 0.7015 0.8357 TS452 29
30 TS391 78.6230 74.0340 0.6789 0.7485 78.6230 74.0340 0.6789 0.7485 TS391 30
31 TS214 78.6230 68.2370 0.6789 0.4267 78.6230 69.0820 0.6789 0.4736 TS214 31
32 TS127 77.8990 69.6860 0.6338 0.5071 77.8990 70.6520 0.6338 0.5608 TS127 32
33 TS307 76.8120 75.8450 0.5662 0.8491 79.3480 76.0870 0.7240 0.8625 TS307 33
34 TS117 76.8120 74.1550 0.5662 0.7552 78.6230 76.2080 0.6789 0.8692 TS117 34
35 TS481 76.8120 70.5310 0.5662 0.5540 78.2610 70.5310 0.6564 0.5540 TS481 35
36 TS047 75.7250 71.8600 0.4985 0.6278 75.7250 71.8600 0.4985 0.6278 TS047 36
37 TS055 75.7250 71.4980 0.4985 0.6077 75.7250 71.4980 0.4985 0.6077 TS055 37
38 TS275 75.7250 70.8940 0.4985 0.5742 78.2610 74.1550 0.6564 0.7552 TS275 38
39 TS213 75.0000 70.6520 0.4534 0.5608 75.0000 70.6520 0.4534 0.5608 TS213 39
40 TS449 74.6380 72.9470 0.4309 0.6882 74.6380 72.9470 0.4309 0.6882 TS449 40
41 TS453 74.6380 72.9470 0.4309 0.6882 74.6380 72.9470 0.4309 0.6882 TS453 41
42 TS346 74.6380 72.9470 0.4309 0.6882 74.6380 72.9470 0.4309 0.6882 TS346 42
43 TS080 73.9130 58.9370 0.3857 -0.0896 82.2460 81.7630 0.9044 1.1776 TS080 43
44 TS345 73.1880 67.1500 0.3406 0.3663 80.0720 74.7580 0.7691 0.7887 TS345 44
45 TS276 73.1880 61.3530 0.3406 0.0445 73.1880 61.3530 0.3406 0.0445 TS276 45
46 TS286 73.1880 61.3530 0.3406 0.0445 73.1880 61.3530 0.3406 0.0445 TS286 46
47 TS476 72.8260 59.0580 0.3181 -0.0829 72.8260 59.0580 0.3181 -0.0829 TS476 47
48 TS302 72.8260 57.6090 0.3181 -0.1633 79.7100 78.5020 0.7465 0.9966 TS302 48
49 TS142 72.8260 57.6090 0.3181 -0.1633 79.7100 78.5020 0.7465 0.9966 TS142 49
50 TS220 72.8260 57.6090 0.3181 -0.1633 79.7100 78.5020 0.7465 0.9966 TS220 50
51 TS447 72.8260 57.6090 0.3181 -0.1633 79.7100 78.5020 0.7465 0.9966 TS447 51
52 TS119 71.7390 66.6670 0.2504 0.3395 80.7970 80.7970 0.8142 1.1240 TS119 52
53 TS129 71.7390 62.3190 0.2504 0.0981 73.1880 71.9810 0.3406 0.6345 TS129 53
54 TS026 71.3770 66.5460 0.2279 0.3328 71.3770 66.5460 0.2279 0.3328 TS026 54
55 TS166 71.3770 65.8210 0.2279 0.2926 76.4490 71.6180 0.5436 0.6144 TS166 55
56 TS165 71.0140 71.0140 0.2053 0.5809 74.2750 71.0140 0.4083 0.5809 TS165 56
57 TS077 71.0140 67.6330 0.2053 0.3932 71.0140 67.6330 0.2053 0.3932 TS077 57
58 TS208 71.0140 63.5270 0.2053 0.1652 72.4640 69.8070 0.2956 0.5139 TS208 58
59 TS420 71.0140 55.7970 0.2053 -0.2639 71.0140 55.7970 0.2053 -0.2639 TS420 59
60 TS435 71.0140 54.3480 0.2053 -0.3444 82.6090 81.8840 0.9270 1.1843 TS435 60
61 TS366 70.2900 64.0100 0.1603 0.1920 71.7390 66.6670 0.2504 0.3395 TS366 61
62 TS063 70.2900 64.0100 0.1603 0.1920 71.7390 67.1500 0.2504 0.3663 TS063 62
63 TS236 69.5650 52.8990 0.1151 -0.4248 70.2900 52.8990 0.1603 -0.4248 TS236 63
64 TS114 69.5650 51.9320 0.1151 -0.4785 69.9280 52.7780 0.1377 -0.4315 TS114 64
65 TS215 68.8410 62.5600 0.0701 0.1115 69.5650 63.8890 0.1151 0.1853 TS215 65
66 TS314 68.1160 61.8360 0.0250 0.0713 68.1160 61.8360 0.0250 0.0713 TS314 66
67 TS056 67.3910 66.1840 -0.0202 0.3127 71.0140 66.4250 0.2053 0.3261 TS056 67
68 TS419 65.9420 53.3820 -0.1103 -0.3980 88.7680 85.6280 1.3103 1.3922 TS419 68
69 TS207 64.8550 64.3720 -0.1780 0.2121 73.9130 68.1160 0.3857 0.4200 TS207 69
70 TS319 64.8550 63.4060 -0.1780 0.1585 66.6670 65.9420 -0.0652 0.2993 TS319 70
71 AL285 64.4930 63.5270 -0.2005 0.1652 64.4930 63.5270 -0.2005 0.1652 AL285 71
72 TS018 64.4930 60.1450 -0.2005 -0.0225 68.8410 66.6670 0.0701 0.3395 TS018 72
73 TS328 63.4060 62.4400 -0.2682 0.1049 63.4060 62.4400 -0.2682 0.1049 TS328 73
74 AL396 63.4060 62.1980 -0.2682 0.0914 72.8260 67.7540 0.3181 0.3999 AL396 74
75 TS304 62.3190 51.2080 -0.3358 -0.5187 73.5510 71.4980 0.3632 0.6077 TS304 75
76 TS436 60.1450 54.3480 -0.4711 -0.3444 60.5070 56.8840 -0.4486 -0.2036 TS436 76
77 TS248 58.3330 48.9130 -0.5839 -0.6461 58.3330 55.6760 -0.5839 -0.2706 TS248 77
78 TS245 57.2460 53.3820 -0.6515 -0.3980 57.2460 53.3820 -0.6515 -0.3980 TS245 78
79 TS409 56.8840 51.0870 -0.6741 -0.5254 67.0290 62.9230 -0.0427 0.1317 TS409 79
80 TS171 55.0720 54.1060 -0.7869 -0.3578 55.0720 54.1060 -0.7869 -0.3578 TS171 80
81 TS350 54.7100 40.5800 -0.8094 -1.1087 56.5220 47.1010 -0.6966 -0.7467 TS350 81
82 TS296 53.6230 52.1740 -0.8770 -0.4651 65.9420 64.0100 -0.1103 0.1920 TS296 82
83 TS257 45.2900 31.7630 -1.3957 -1.5982 56.1590 45.2900 -0.7192 -0.8472 TS257 83
84 TS250 44.2030 35.9900 -1.4633 -1.3635 46.0140 39.4930 -1.3506 -1.1691 TS250 84
85 TS355 43.8410 38.0430 -1.4858 -1.2496 53.9860 45.7730 -0.8544 -0.8204 TS355 85
86 TS140 41.3040 34.7830 -1.6437 -1.4305 41.3040 34.7830 -1.6437 -1.4305 TS140 86
87 TS291 40.5800 36.5940 -1.6888 -1.3300 46.0140 44.2030 -1.3506 -0.9076 TS291 87
88 TS433 36.9570 25.6040 -1.9143 -1.9401 40.2170 31.5220 -1.7114 -1.6116 TS433 88
89 TS331 36.9570 25.6040 -1.9143 -1.9401 36.9570 35.0240 -1.9143 -1.4172 TS331 89
90 TS039 36.2320 33.2130 -1.9594 -1.5177 37.6810 33.2130 -1.8692 -1.5177 TS039 90
91 TS086 36.2320 33.2130 -1.9594 -1.5177 37.6810 33.2130 -1.8692 -1.5177 TS086 91
92 TS014 35.1450 33.2130 -2.0270 -1.5177 39.8550 34.4200 -1.7339 -1.4507 TS014 92
93 TS289 34.4200 34.1790 -2.0722 -1.4641 34.4200 34.1790 -2.0722 -1.4641 TS289 93
94 TS264 32.6090 31.6430 -2.1849 -1.6049 52.8990 45.8940 -0.9221 -0.8137 TS264 94
95 TS269 32.6090 28.2610 -2.1849 -1.7926 36.9570 32.6090 -1.9143 -1.5512 TS269 95
96 TS152 32.6090 28.2610 -2.1849 -1.7926 38.0430 33.2130 -1.8467 -1.5177 TS152 96
97 TS229 32.6090 27.2950 -2.1849 -1.8462 34.7830 33.3330 -2.0496 -1.5110 TS229 97
98 TS322 32.2460 27.4150 -2.2075 -1.8396 34.7830 32.6090 -2.0496 -1.5512 TS322 98
99 RANDOM 28.81 24.11 -2.4213 -2.0231 28.81 24.11 -2.4213 -2.0231 RANDOM 99
100 TS444 27.5360 20.4110 -2.5006 -2.2284 34.4200 28.1400 -2.0722 -1.7993 TS444 100
101 TS471 26.8120 24.1550 -2.5457 -2.0206 26.8120 24.1550 -2.5457 -2.0206 TS471 101
102 TS009             -2.4213 -2.0231             -2.4213 -2.0231 TS009 102
103 TS016             -2.4213 -2.0231             -2.4213 -2.0231 TS016 103
104 TS020             -2.4213 -2.0231             -2.4213 -2.0231 TS020 104
105 TS029             -2.4213 -2.0231             -2.4213 -2.0231 TS029 105
106 TS033             -2.4213 -2.0231             -2.4213 -2.0231 TS033 106
107 TS035             -2.4213 -2.0231             -2.4213 -2.0231 TS035 107
108 TS042             -2.4213 -2.0231             -2.4213 -2.0231 TS042 108
109 TS044             -2.4213 -2.0231             -2.4213 -2.0231 TS044 109
110 TS045             -2.4213 -2.0231             -2.4213 -2.0231 TS045 110
111 TS061             -2.4213 -2.0231             -2.4213 -2.0231 TS061 111
112 TS074             -2.4213 -2.0231             -2.4213 -2.0231 TS074 112
113 TS075             -2.4213 -2.0231             -2.4213 -2.0231 TS075 113
114 TS083             -2.4213 -2.0231             -2.4213 -2.0231 TS083 114
115 TS084             -2.4213 -2.0231             -2.4213 -2.0231 TS084 115
116 TS096             -2.4213 -2.0231             -2.4213 -2.0231 TS096 116
117 TS105             -2.4213 -2.0231             -2.4213 -2.0231 TS105 117
118 TS110             -2.4213 -2.0231             -2.4213 -2.0231 TS110 118
119 TS147             -2.4213 -2.0231             -2.4213 -2.0231 TS147 119
120 TS149             -2.4213 -2.0231             -2.4213 -2.0231 TS149 120
121 TS150             -2.4213 -2.0231             -2.4213 -2.0231 TS150 121
122 TS153             -2.4213 -2.0231             -2.4213 -2.0231 TS153 122
123 TS154             -2.4213 -2.0231             -2.4213 -2.0231 TS154 123
124 TS160             -2.4213 -2.0231             -2.4213 -2.0231 TS160 124
125 TS170             -2.4213 -2.0231             -2.4213 -2.0231 TS170 125
126 TS172             -2.4213 -2.0231             -2.4213 -2.0231 TS172 126
127 TS178             -2.4213 -2.0231             -2.4213 -2.0231 TS178 127
128 TS180             -2.4213 -2.0231             -2.4213 -2.0231 TS180 128
129 TS182             -2.4213 -2.0231             -2.4213 -2.0231 TS182 129
130 TS184             -2.4213 -2.0231             -2.4213 -2.0231 TS184 130
131 TS186             -2.4213 -2.0231             -2.4213 -2.0231 TS186 131
132 TS189             -2.4213 -2.0231             -2.4213 -2.0231 TS189 132
133 TS192             -2.4213 -2.0231             -2.4213 -2.0231 TS192 133
134 TS199             -2.4213 -2.0231             -2.4213 -2.0231 TS199 134
135 TS200             -2.4213 -2.0231             -2.4213 -2.0231 TS200 135
136 TS206             -2.4213 -2.0231             -2.4213 -2.0231 TS206 136
137 TS228             -2.4213 -2.0231             -2.4213 -2.0231 TS228 137
138 TS242             -2.4213 -2.0231             -2.4213 -2.0231 TS242 138
139 TS254             -2.4213 -2.0231             -2.4213 -2.0231 TS254 139
140 TS261             -2.4213 -2.0231             -2.4213 -2.0231 TS261 140
141 TS263             -2.4213 -2.0231             -2.4213 -2.0231 TS263 141
142 TS278             -2.4213 -2.0231             -2.4213 -2.0231 TS278 142
143 TS279             -2.4213 -2.0231             -2.4213 -2.0231 TS279 143
144 TS282             -2.4213 -2.0231             -2.4213 -2.0231 TS282 144
145 TS295             -2.4213 -2.0231             -2.4213 -2.0231 TS295 145
146 TS297             -2.4213 -2.0231             -2.4213 -2.0231 TS297 146
147 TS299             -2.4213 -2.0231             -2.4213 -2.0231 TS299 147
148 TS300             -2.4213 -2.0231             -2.4213 -2.0231 TS300 148
149 TS301             -2.4213 -2.0231             -2.4213 -2.0231 TS301 149
150 TS311             -2.4213 -2.0231             -2.4213 -2.0231 TS311 150
151 TS316             -2.4213 -2.0231             -2.4213 -2.0231 TS316 151
152 TS324             -2.4213 -2.0231             -2.4213 -2.0231 TS324 152
153 TS330             -2.4213 -2.0231             -2.4213 -2.0231 TS330 153
154 TS333             -2.4213 -2.0231             -2.4213 -2.0231 TS333 154
155 TS336             -2.4213 -2.0231             -2.4213 -2.0231 TS336 155
156 TS347             -2.4213 -2.0231             -2.4213 -2.0231 TS347 156
157 TS353             -2.4213 -2.0231             -2.4213 -2.0231 TS353 157
158 TS358             -2.4213 -2.0231             -2.4213 -2.0231 TS358 158
159 TS360             -2.4213 -2.0231             -2.4213 -2.0231 TS360 159
160 TS362             -2.4213 -2.0231             -2.4213 -2.0231 TS362 160
161 TS365             -2.4213 -2.0231             -2.4213 -2.0231 TS365 161
162 TS373             -2.4213 -2.0231             -2.4213 -2.0231 TS373 162
163 TS382             -2.4213 -2.0231             -2.4213 -2.0231 TS382 163
164 TS386             -2.4213 -2.0231             -2.4213 -2.0231 TS386 164
165 TS399             -2.4213 -2.0231             -2.4213 -2.0231 TS399 165
166 TS400             -2.4213 -2.0231             -2.4213 -2.0231 TS400 166
167 TS402             -2.4213 -2.0231             -2.4213 -2.0231 TS402 167
168 TS403             -2.4213 -2.0231             -2.4213 -2.0231 TS403 168
169 TS408             -2.4213 -2.0231             -2.4213 -2.0231 TS408 169
170 TS418             -2.4213 -2.0231             -2.4213 -2.0231 TS418 170
171 TS423             -2.4213 -2.0231             -2.4213 -2.0231 TS423 171
172 TS424             -2.4213 -2.0231             -2.4213 -2.0231 TS424 172
173 TS439             -2.4213 -2.0231             -2.4213 -2.0231 TS439 173
174 TS450             -2.4213 -2.0231             -2.4213 -2.0231 TS450 174
175 TS458             -2.4213 -2.0231             -2.4213 -2.0231 TS458 175
176 TS461             -2.4213 -2.0231             -2.4213 -2.0231 TS461 176
177 TS477             -2.4213 -2.0231             -2.4213 -2.0231 TS477 177
178 TS484             -2.4213 -2.0231             -2.4213 -2.0231 TS484 178